Citrus Sinensis ID: 037941

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------31
Protein Sequence
MHDVVHDIAVSTARDKHMFNIQIISDLREVFEDLMQKDPIAISHPCRDIQELPEKLECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKKLVIFSFRNSHIEQLPEEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEVEGQNNASLAELNQLSRLTTLEMLILDAQVMPRELFSLGLERNKIFLGDVWSWTGKYETSRTLKLKLDNRMYLEHGIKMLLRRTEDLHLDKLNGLQNVLHELDGEGFPRLKHLLVQNASEILYIVSSVEGAA
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHcccEEEEEEccccHHHHHHccccccEEEEcccccccccccccccccccEEEEccccccccccHHHHcccccccEEEcccccccccccccccHHHHHHcccccEEEccccccccccHHHHccccccEEcccccccccccccccccccccccEEEcccccccEEEcccccccHHHHcccccccEEEEEEEccccccccccccccccccEEccccccccccccccccEEEccccccccHHHHHHHcccccEEEEccccccccccccccccccccccEEEcccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHccccEEEEccccccccccHHHHHHEEEEEEccccHHHccccccccccEEEEEEccccccccccHHHHHcccEEEEEccccccccccHHHccHHHHHHHHHcEEEEcccccHHHccHHHHHHHHcEEEcccccccccEccccHHHHHHHHHEEEEccccccccccccccHHHHHHHHHHcccEEEEEEccHHHccHHHHHHHHHEEEEEEcccccccccccHcccEEEEEcccHHHHHHHHHHHHHHHEEEEcccccccHEEHccccccccccEEEEEEccHHHHHHcccHHccc
Coil and Loop (DISEMBL)
MHDVVHDIAVStardkhmfNIQIISDLREVFEDLmqkdpiaishpcrdiqelpeklecpklklFFLFSEKLslvipdlffegvpslqvlslngfhfpslpstlgdvatVGVLKKLVIFSFRNSHIEQLPEEIGQLTRlklldlstcsklksirpnvisnlprleelymgnsfthwevegqnnaslAELNQLSRLTTLEMLILDAQVMPRELFSlglernkiflgdvwswtgkyetsrtLKLKLDNRMYLEHGIKMLLRRTEDLHLDKLNGLQNVLheldgegfprlKHLLVQNASEILYIVSSVEGAA
Flexible Loop (DISEMBL)
MHDVVHDIAvstardkhmfnIQIISDLREVFEDLMQKDPIAISHPCRDIQELPEKLECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKKLVIFSFRNSHIEQLPEEIGQLTRLKLLDLstcsklksirpnvisnlpRLEELYMGNSFTHWEVEGQNNASLAELNQLSRLTTLEMLILDAQVMPRELFSLGLERNKIflgdvwswtgkyetsrtlklkldnRMYLEHGIKMLLRRTEDLHLDKLNGLQNVLHELDGEGFPRLKHLLVQNASEILYIVSSVEGAA
Low Complexity Region (SEG)
MHDVVHDIAVSTARDKHMFNIQIISDLREVFEDLMQKDPIAISHPCRDIQelpeklecpklklfflfseklslVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKKLVIFSFRNSHIEQLPEEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEVEGQNNASLAELNQLSRLTTLEMLILDAQVMPRELFSLGLERNKIFLGDVWSWTGKYETSRTLKLKLDNRMYLEHGIKMLLRRTEDLHLDKLNGLQNVLHELDGEGFPRLKHLLVQNASEILYIVSSVEGAA
Disordered region (IsUnstruct)
****VHDIAVSTARDKHMFNIQIISDLREVFEDLMQKDPIAISHPCRDIQELPEKLECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKKLVIFSFRNSHIEQLPEEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEVEGQNNASLAELNQLSRLTTLEMLILDAQVMPRELFSLGLERNKIFLGDVWSWTGKYETSRTLKLKLDNRMYLEHGIKMLLRRTEDLHLDKLNGLQNVLHELDGEGFPRLKHLLVQNASEILYIVS******
Disordered Region (DISOPRED)
MHDVVHDIAVSTARDKHMFNIQIISDLREVFEDLMQKDPIAISHPCRDIQELPEKLECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKKLVIFSFRNSHIEQLPEEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEVEGQNNASLAELNQLSRLTTLEMLILDAQVMPRELFSLGLERNKIFLGDVWSWTGKYETSRTLKLKLDNRMYLEHGIKMLLRRTEDLHLDKLNGLQNVLHELDGEGFPRLKHLLVQNASEILYIVSSV****
Disordered Region (DISEMBL)
MHDVVHDIAVSTARDKHMFNIQIISDLREVFEDLMQKDPIAISHPCRDIQELPEKLECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKKLVIFSFRNSHIEQLPEEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEVEGQNNASLAELNQLSRLTTLEMLILDAQVMPRELFSLGLERNKIFLGDVWSWTGKYETSRTLKLKLDNRMYLEHGIKMLLRRTEDLHLDKLNGLQNVLHELDGEGFPRLKHLLVQNASEILYIVSSVEGAA
Disordered Region (DISPRO)
*HDVVHDIAVSTARDKHMFNIQIISDLREVFEDLMQKDPIAISHPCRDIQELPEKLECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKKLVIFSFRNSHIEQLPEEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEVEGQNNASLAELNQLSRLTTLEMLILDAQVMPRELFSLGLERNKIFLGDVWSWTGKYETSRTLKLKLDNRMYLEHGIKMLLRRTEDLHLDKLNGLQNVLHELDGEGFPRLKHLLVQNASEILYIVSS*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MHDVVHDIAVSTARDKHMFNIQIISDLREVFEDLMQKDPIAISHPCRDIQELPEKLECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKKLVIFSFRNSHIEQLPEEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEVEGQNNASLAELNQLSRLTTLEMLILDAQVMPRELFSLGLERNKIFLGDVWSWTGKYETSRTLKLKLDNRMYLEHGIKMLLRRTEDLHLDKLNGLQNVLHELDGEGFPRLKHLLVQNASEILYIVSSVEGAA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	308	2.2.26 [Sep-21-2011]
Q9T048	985	Disease resistance protei	yes	no	0.944	0.295	0.25	1e-16
Q42484	909	Disease resistance protei	no	no	0.675	0.228	0.308	1e-13
O81825	919	Probable disease resistan	no	no	0.655	0.219	0.237	2e-06
Q14160	1630	Protein scribble homolog	yes	no	0.470	0.088	0.292	3e-05
Q9C8T9	898	Putative disease resistan	no	no	0.646	0.221	0.256	6e-05
Q01513	2145	Adenylate cyclase OS=Podo	yes	no	0.327	0.047	0.333	0.0001
Q9SYQ8	980	Receptor protein kinase C	no	no	0.347	0.109	0.316	0.0002
Q01631	2300	Adenylate cyclase OS=Neur	N/A	no	0.262	0.035	0.359	0.0003
O82484	892	Putative disease resistan	no	no	0.522	0.180	0.297	0.0004
O02833	605	Insulin-like growth facto	N/A	no	0.337	0.171	0.336	0.0005

>sp|Q9T048|DRL27_ARATH Disease resistance protein At4g27190 OS=Arabidopsis thaliana GN=At4g27190 PE=2 SV=1

 Score = 87.0 bits (214), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 81/324 (25%), Positives = 147/324 (45%), Gaps = 33/324 (10%)

Query: 1   MHDVVHDIAV---STARDKHMFNIQIISDLREVFEDLMQKDPIAISHPCRDIQELPEKLE 57
           MHDVV D A+   S+++D     +   + L+++ +D +      +S     ++ LP+ +E
Sbjct: 462 MHDVVRDFAIWIMSSSQDDSHSLVMSGTGLQDIRQDKLAPSLRRVSLMNNKLESLPDLVE 521

Query: 58  --CPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPST------------- 102
             C K  +  L    L   +P  F +  P+L++L+L+G    S PS              
Sbjct: 522 EFCVKTSVLLLQGNFLLKEVPIGFLQAFPTLRILNLSGTRIKSFPSCSLLRLFSLHSLFL 581

Query: 103 -----LGDVATVGVLKKLVIFSFRNSHIEQLPEEIGQLTRLKLLDLSTCSKLKSIRPNVI 157
                L  + ++  L KL +     +HI + P  + +L R + LDLS    L+SI   V+
Sbjct: 582 RDCFKLVKLPSLETLAKLELLDLCGTHILEFPRGLEELKRFRHLDLSRTLHLESIPARVV 641

Query: 158 SNLPRLEELYMGNSFTHWEVEGQNNASLAELNQLSRLTTLEMLILDAQVMP-----RELF 212
           S L  LE L M +S   W V+G+     A + ++  L  L++L +     P     R  +
Sbjct: 642 SRLSSLETLDMTSSHYRWSVQGETQKGQATVEEIGCLQRLQVLSIRLHSSPFLLNKRNTW 701

Query: 213 SLGLERNKIFLGDVWSWTGKYETSRTLKLKLDNRMYLEHGIKMLLRRTEDLHLDKLNGLQ 272
              L++ ++ +G  +    +++  R   L + +    +  I  LL  T  L L+   G++
Sbjct: 702 IKRLKKFQLVVGSRYILRTRHDKRR---LTISHLNVSQVSIGWLLAYTTSLALNHCQGIE 758

Query: 273 NVLHEL--DGEGFPRLKHLLVQNA 294
            ++ +L  D +GF  LK L ++N 
Sbjct: 759 AMMKKLVSDNKGFKNLKSLTIENV 782

Disease resistance protein.
Arabidopsis thaliana (taxid: 3702)

>sp|Q42484|RPS2_ARATH Disease resistance protein RPS2 OS=Arabidopsis thaliana GN=RPS2 PE=1 SV=1

 Score = 77.8 bits (190), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 69/224 (30%), Positives = 106/224 (47%), Gaps = 16/224 (7%)

Query: 1   MHDVVHDIAVSTARDKHMFNIQIISDLR----EVFEDLMQKDPIAISHPCRDIQELPEKL 56
           MH+VV   A+  A ++  +   I+ +      E  +    +  + IS     IQ LPEKL
Sbjct: 471 MHNVVRSFALWMASEQGTYKELILVEPSMGHTEAPKAENWRQALVISLLDNRIQTLPEKL 530

Query: 57  ECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKKLV 116
            CPKL    L        IP  FF  +P L+VL L+      +P       ++  L +L 
Sbjct: 531 ICPKLTTLMLQQNSSLKKIPTGFFMHMPVLRVLDLSFTSITEIP------LSIKYLVELY 584

Query: 117 IFSFRNSHIEQLPEEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWE 176
             S   + I  LP+E+G L +LK LDL     L++I  + I  L +LE L +  S+  WE
Sbjct: 585 HLSMSGTKISVLPQELGNLRKLKHLDLQRTQFLQTIPRDAICWLSKLEVLNLYYSYAGWE 644

Query: 177 VE--GQNNA---SLAELNQLSRLTTLEMLILDAQVMPRELFSLG 215
           ++  G++ A     A+L  L  LTTL + +L  + + + LF  G
Sbjct: 645 LQSFGEDEAEELGFADLEYLENLTTLGITVLSLETL-KTLFEFG 687

Disease resistance (R) protein that specifically recognizes the AvrRpt2 type III effector avirulence protein from Pseudomonas syringae. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Acts via its interaction with RIN4, and probably triggers the plant resistance when RIN4 is degraded by AvrRpt2.

Arabidopsis thaliana (taxid: 3702)

>sp|O81825|DRL28_ARATH Probable disease resistance protein At4g27220 OS=Arabidopsis thaliana GN=At4g27220 PE=2 SV=1

 Score = 53.5 bits (127), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 53/223 (23%), Positives = 94/223 (42%), Gaps = 21/223 (9%)

Query: 1   MHDVVHDIAV---STARDKHMFNIQIISDLREVFEDLMQKDPIAISHPCRDIQELPEK-L 56
           MHDVV D A+   S+  +     +     L E  +D        +S     ++ LP   +
Sbjct: 431 MHDVVRDFAIWFMSSQGEGFHSLVMAGRGLIEFPQDKFVSSVQRVSLMANKLERLPNNVI 490

Query: 57  ECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPST-------------- 102
           E  +  +  L        +P+ F +  P+L++L L+G    +LP +              
Sbjct: 491 EGVETLVLLLQGNSHVKEVPNGFLQAFPNLRILDLSGVRIRTLPDSFSNLHSLRSLVLRN 550

Query: 103 ---LGDVATVGVLKKLVIFSFRNSHIEQLPEEIGQLTRLKLLDLSTCSKLKSIRPNVISN 159
              L ++ ++  L KL       S I +LP  +  L+ L+ + +S   +L+SI    I  
Sbjct: 551 CKKLRNLPSLESLVKLQFLDLHESAIRELPRGLEALSSLRYICVSNTYQLQSIPAGTILQ 610

Query: 160 LPRLEELYMGNSFTHWEVEGQNNASLAELNQLSRLTTLEMLIL 202
           L  LE L M  S   W ++G+     A L++++ L  L+ L +
Sbjct: 611 LSSLEVLDMAGSAYSWGIKGEEREGQATLDEVTCLPHLQFLAI 653

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q14160|SCRIB_HUMAN Protein scribble homolog OS=Homo sapiens GN=SCRIB PE=1 SV=4

 Score = 49.7 bits (117), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 48/164 (29%), Positives = 75/164 (45%), Gaps = 19/164 (11%)

Query: 48  DIQELPEKLE-CPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDV 106
           DI E+PE ++ C  L++       LS  +PD F + + SL  L+LN     +LP  +G++
Sbjct: 93  DIPEIPESIKFCKALEIADFSGNPLSR-LPDGFTQ-LRSLAHLALNDVSLQALPGDVGNL 150

Query: 107 ATVGVLKKLVIFSFRNSHIEQLPEEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEEL 166
           A       LV    R + ++ LP  +  L +L+ LDL        + P+ +  LP L EL
Sbjct: 151 AN------LVTLELRENLLKSLPASLSFLVKLEQLDLG--GNDLEVLPDTLGALPNLREL 202

Query: 167 YMGNSFTHWEVEGQNNASLAELNQLSRLTTLEMLILDAQVMPRE 210
                   W    Q +A   EL  L RL  L++     + +P E
Sbjct: 203 --------WLDRNQLSALPPELGNLRRLVCLDVSENRLEELPAE 238

Scaffold protein involved in different aspects of polarized cells differentiation regulating epithelial and neuronal morphogenesis. Most probably functions in the establishment of apico-basal cell polarity. May function in cell proliferation regulating progression from G1 to S phase and as a positive regulator of apoptosis for instance during acinar morphogenesis of the mammary epithelium. May also function in cell migration and adhesion and hence regulate cell invasion through MAPK signaling. May play a role in exocytosis and in the targeting synaptic vesicles to synapses. Functions as an activator of Rac GTPase activity.

Homo sapiens (taxid: 9606)

>sp|Q9C8T9|DRL19_ARATH Putative disease resistance protein At1g63350 OS=Arabidopsis thaliana GN=At1g63350 PE=2 SV=1

 Score = 48.5 bits (114), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 56/218 (25%), Positives = 99/218 (45%), Gaps = 19/218 (8%)

Query: 1   MHDVVHDIAVSTARD----KHMFNIQIISDLREVFEDLMQKDPIAISHPCRDIQELPEKL 56
           +HDVV ++A+  A D       F ++    LRE+ +         +S    +I  L  +L
Sbjct: 475 LHDVVREMALWIASDLGKQNEAFIVRASVGLREILKVENWNVVRRMSLMKNNIAHLDGRL 534

Query: 57  ECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNG-FHFPSLPSTLGDVATVGVLKKL 115
           +C +L    L S  L  +  + FF  +P L VL L+G ++   LP+ + ++ ++  L   
Sbjct: 535 DCMELTTLLLQSTHLEKISSE-FFNSMPKLAVLDLSGNYYLSELPNGISELVSLQYL--- 590

Query: 116 VIFSFRNSHIEQLPEEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHW 175
              +  ++ I  LP+ + +L +L  L L   S+L S+    IS L  L+ L +  S   W
Sbjct: 591 ---NLSSTGIRHLPKGLQELKKLIHLYLERTSQLGSMVG--ISCLHNLKVLKLSGSSYAW 645

Query: 176 EVEGQNNASLAELNQLSRLTTLEMLILDAQVMPRELFS 213
           +++     ++ EL  L  L  L   I D  +   +  S
Sbjct: 646 DLD-----TVKELEALEHLEVLTTTIDDCTLGTDQFLS 678

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q01513|CYAA_PODAS Adenylate cyclase OS=Podospora anserina PE=3 SV=1

 Score = 47.4 bits (111), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/120 (33%), Positives = 59/120 (49%), Gaps = 19/120 (15%)

Query: 55   KLECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKK 114
            K   P LK   L + +L+ +  D  F  + +L+ L L+  +F SLP      A +G L++
Sbjct: 1002 KAPVPTLKALNLSNAQLASI--DESFHNMSNLERLELDKNYFVSLP------AHIGNLRR 1053

Query: 115  LVIFSFRNSHIEQLPEEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTH 174
            L  FS  ++ + +LP EIG LT LK LD         +R N I  LP   EL+  N   +
Sbjct: 1054 LEYFSIAHNSVGELPPEIGCLTELKRLD---------VRGNNIRKLPM--ELWWANKLDY 1102

Plays essential roles in regulation of cellular metabolism by catalyzing the synthesis of a second messenger, cAMP.

Podospora anserina (taxid: 5145)

EC: 4

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 1

>sp|Q9SYQ8|CLV1_ARATH Receptor protein kinase CLAVATA1 OS=Arabidopsis thaliana GN=CLV1 PE=1 SV=3

 Score = 46.6 bits (109), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/120 (31%), Positives = 61/120 (50%), Gaps = 13/120 (10%)

Query: 53  PEKLECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHF----PSLPSTLGDVAT 108
           PE  E  KLK         S  IP+ + + + SL+ L LNG       P+  S L +   
Sbjct: 162 PEMSELKKLKYLSFGGNFFSGEIPESYGD-IQSLEYLGLNGAGLSGKSPAFLSRLKN--- 217

Query: 109 VGVLKKLVIFSFRNSHIEQLPEEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYM 168
              L+++ I  + NS+   +P E G LT+L++LD+++C+    I P  +SNL  L  L++
Sbjct: 218 ---LREMYI-GYYNSYTGGVPPEFGGLTKLEILDMASCTLTGEI-PTSLSNLKHLHTLFL 272

Involved in the detection of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristem maintenance. Acts with CLV3 as a ligand-receptor pair in a signal transduction pathway coordinating growth between adjacent meristematic regions and controlling the balance between meristem cell proliferation and differentiation.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q01631|CYAA_NEUCR Adenylate cyclase OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=cr-1 PE=3 SV=2

 Score = 46.2 bits (108), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 51/89 (57%), Gaps = 8/89 (8%)

Query: 55   KLECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKK 114
            K   P LK+  L + +L+ +  D   + + +L+ L L+  +F SLP+ +G+      LKK
Sbjct: 1116 KAPVPTLKILNLSNAQLASI--DESIDNLMNLERLILDSNYFVSLPNQIGN------LKK 1167

Query: 115  LVIFSFRNSHIEQLPEEIGQLTRLKLLDL 143
            L   S  N+H+ +LP EIG LT L+ LD+
Sbjct: 1168 LDHLSMANNHLGELPPEIGCLTELRTLDV 1196

Plays essential roles in regulation of cellular metabolism by catalyzing the synthesis of a second messenger, cAMP.

Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) (taxid: 367110)

EC: 4

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 1

>sp|O82484|DRL23_ARATH Putative disease resistance protein At4g10780 OS=Arabidopsis thaliana GN=At4g10780 PE=2 SV=1

 Score = 45.8 bits (107), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 53/178 (29%), Positives = 81/178 (45%), Gaps = 17/178 (9%)

Query: 1   MHDVVHDIAVST----ARDKHMFNIQIISDLREV--FEDLMQKDPIAISHPCRDIQELPE 54
           MHDVV ++A+ T     ++K    +Q  S LR+V   ED      +++ +    I+E+  
Sbjct: 474 MHDVVREMALWTLSDLGKNKERCIVQAGSGLRKVPKVEDWGAVRRLSLMN--NGIEEISG 531

Query: 55  KLECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFH-FPSLPSTLGDVATVGVLK 113
             ECP+L   FL   K  + I   FF  +  L VL L+  H    LP  + ++  +  L 
Sbjct: 532 SPECPELTTLFLQENKSLVHISGEFFRHMRKLVVLDLSENHQLDGLPEQISELVALRYL- 590

Query: 114 KLVIFSFRNSHIEQLPEEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNS 171
                   +++IE LP  +  L  L  L+L    +L SI    IS L  L  L + NS
Sbjct: 591 -----DLSHTNIEGLPACLQDLKTLIHLNLECMRRLGSIAG--ISKLSSLRTLGLRNS 641

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|O02833|ALS_PAPHA Insulin-like growth factor-binding protein complex acid labile subunit OS=Papio hamadryas GN=IGFALS PE=2 SV=1

 Score = 45.4 bits (106), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 37/110 (33%), Positives = 60/110 (54%), Gaps = 6/110 (5%)

Query: 59  PKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKKLVIF 118
           P L L  L + +LS  + D  FEG+ +L  L+L       LP        +G L++LV+ 
Sbjct: 146 PALALLGLSNNRLS-RLEDGLFEGLGNLWDLNLGWNSLAVLPDA--AFRGLGGLRELVLA 202

Query: 119 SFRNSHIEQLPEEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYM 168
             R ++++  P     L  L+ LDLS  + L++I+ NV + LPRL++LY+
Sbjct: 203 GNRLAYLQ--PALFSGLAELRELDLSR-NALRAIKANVFAQLPRLQKLYL 249

Involved in protein-protein interactions that result in protein complexes, receptor-ligand binding or cell adhesion.

Papio hamadryas (taxid: 9557)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	308
255563252	1603	Disease resistance protein RPS5, putativ	0.977	0.187	0.509	1e-76
255542484	2460	phosphoprotein phosphatase, putative [Ri	0.983	0.123	0.486	1e-73
224111296	1315	cc-nbs-lrr resistance protein [Populus t	0.980	0.229	0.467	2e-71
224125154	949	cc-nbs-lrr resistance protein [Populus t	0.980	0.318	0.476	4e-70
255574526	1232	Disease resistance protein RFL1, putativ	0.996	0.249	0.458	4e-68
147865073	1694	hypothetical protein VITISV_021876 [Viti	0.987	0.179	0.484	3e-67
359488101	1677	PREDICTED: disease resistance protein At	0.987	0.181	0.480	5e-66
359488025	1781	PREDICTED: uncharacterized protein LOC10	0.987	0.170	0.470	1e-65
359488103	1530	PREDICTED: disease resistance protein At	0.980	0.197	0.455	1e-63
359488108	1436	PREDICTED: disease resistance protein At	0.987	0.211	0.461	3e-63

>gi|255563252|ref|XP_002522629.1| Disease resistance protein RPS5, putative [Ricinus communis] gi|223538105|gb|EEF39716.1| Disease resistance protein RPS5, putative [Ricinus communis]

 Score =  292 bits (747), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 164/322 (50%), Positives = 219/322 (68%), Gaps = 21/322 (6%)

Query: 1   MHDVVHDIAVSTA-RDKHMFNIQIISDLREVFEDLMQKDPIAISHPCRDIQELPEKLECP 59
           +HDVV D+A+S A R +H+F ++  + L+E     + K    IS P  DI  LPE LECP
Sbjct: 466 IHDVVRDVAISIASRMQHLFTVRNGALLKEWPNKDVCKSCTRISLPYNDIHGLPEVLECP 525

Query: 60  KLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLG--------------- 104
           +L+LF LF++ +SL +PDL FE   +L+VL+  G HF SLP +LG               
Sbjct: 526 ELELFLLFTQDISLKVPDLCFELTKNLRVLNFTGMHFSSLPPSLGFLKNLFTLCLDWCAL 585

Query: 105 -DVATVGVLKKLVIFSFRNSHIEQLPEEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRL 163
            DVA +G L  L I SF++S I +LP EI QLT+LK LDLS C KLK I   +IS L +L
Sbjct: 586 RDVAIIGELTGLTILSFKHSDIVELPREIRQLTKLKFLDLSHCLKLKVIPAKIISELTQL 645

Query: 164 EELYMGNSFTHWEVEG---QNNASLAELNQLSRLTTLEMLILDAQVMPRELFSLGLERNK 220
           EELYM NSF  W+V+G   Q NASLAEL  L  LTTLE+ +LDA+++P++LF   LER +
Sbjct: 646 EELYMNNSFDLWDVQGINNQRNASLAELECLPYLTTLEICVLDAKILPKDLFFRKLERFR 705

Query: 221 IFLGDVWSWTGKYETSRTLKLKLD-NRMYLEHGIKMLLRRTEDLHLDKLNGLQNVLHELD 279
           IF+GDVWS TG Y TSRTLKLKL+ + ++LEHG+ +LL  TEDL+L ++ G+++VL++LD
Sbjct: 706 IFIGDVWSGTGDYGTSRTLKLKLNTSSIHLEHGLSILLEVTEDLYLAEVKGIKSVLYDLD 765

Query: 280 GEGFPRLKHLLVQNASEILYIV 301
            +GF +LKHL VQN  EI YI+
Sbjct: 766 SQGFTQLKHLDVQNDPEIQYII 787

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255542484|ref|XP_002512305.1| phosphoprotein phosphatase, putative [Ricinus communis] gi|223548266|gb|EEF49757.1| phosphoprotein phosphatase, putative [Ricinus communis]

 Score =  282 bits (721), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 158/325 (48%), Positives = 213/325 (65%), Gaps = 22/325 (6%)

Query: 1   MHDVVHDIAVSTA-RDKHMFNIQIISDLREVFEDLMQKDPIAISHPCRDIQELPEKLECP 59
           MHDVVH+ A   A RD H+F +   S L E  E  + +   AIS P   I +LPE  ECP
Sbjct: 415 MHDVVHNFATLVASRDHHVFAVACDSGLEEWPEKDILEQFTAISLPDCKIPKLPEVFECP 474

Query: 60  KLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLP----------------STL 103
            L+ F L+++  SL IPD FF  +  L+++ L+  H   +P                 TL
Sbjct: 475 DLQSFLLYNKDSSLKIPDNFFSRMKKLKLMDLSNVHLSPMPLSLQCLENLQTLCLDRCTL 534

Query: 104 GDVATVGVLKKLVIFSFRNSHIEQLPEEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRL 163
            D+A +G LKKL + SF  S + QLP E+G+LTRL+LLDLS C KL+ I   V+S L +L
Sbjct: 535 EDIAAIGELKKLQVLSFIGSTMVQLPREVGKLTRLQLLDLSRCQKLEVIPKGVLSCLTKL 594

Query: 164 EELYMGNSFTHWEVE----GQNNASLAELNQLSRLTTLEMLILDAQVMPRELFSLGLERN 219
           EELYMGNSF  WE E     +NNASL EL  L  L TLE+ I++A+++PR++FS  L+  
Sbjct: 595 EELYMGNSFVQWESEEHDGDRNNASLDELKLLPNLVTLELHIINAEILPRDVFSEKLDLY 654

Query: 220 KIFLGDVWSWTGKYETSRTLKLKLDNRMYLEHGIKMLLRRTEDLHLDKLNGLQNVLHELD 279
           K+F+G+ WSW GKYE SRTLKLKL++ + +E  +K+LL  TEDL+LD+L G++NVL+ELD
Sbjct: 655 KVFIGEEWSWFGKYEASRTLKLKLNSSIEIEK-VKVLLMTTEDLYLDELEGVRNVLYELD 713

Query: 280 GEGFPRLKHLLVQNASEILYIVSSV 304
           G+GFP+LKHL +QN+SEI YIV  +
Sbjct: 714 GQGFPQLKHLHIQNSSEIQYIVDCL 738

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224111296|ref|XP_002332952.1| cc-nbs-lrr resistance protein [Populus trichocarpa] gi|222834264|gb|EEE72741.1| cc-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  275 bits (703), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 153/327 (46%), Positives = 210/327 (64%), Gaps = 25/327 (7%)

Query: 1   MHDVVHDIAVSTA-RDKHMFNIQIISDLREVFEDLMQKDPIAISHPCRDIQELPEKLECP 59
           MHDVVH  A+S A RD H+  +    + +E   + + +   AIS P R I +LP  LECP
Sbjct: 460 MHDVVHSFAISVALRDHHVLTVA--DEFKEWPANDVLQQYTAISLPFRKIPDLPAILECP 517

Query: 60  KLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLG--------------- 104
            L  F L ++  SL IPD FF  +  L++L L   +   LPS+L                
Sbjct: 518 NLNSFLLLNKDPSLQIPDSFFREMKELKILDLTEVNLSPLPSSLQFLENLQTLCLDHCVL 577

Query: 105 -DVATVGVLKKLVIFSFRNSHIEQLPEEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRL 163
            D++ +G L KL + S  +S+I +LP EIG++TRL+LLDLS C +L+ I PN +S+L RL
Sbjct: 578 EDISIIGELNKLKVLSLMSSNIVRLPREIGKVTRLQLLDLSNCERLEVISPNALSSLTRL 637

Query: 164 EELYMGNSFTHWEVEG----QNNASLAELNQLSRLTTLEMLILDAQVMPRELFS--LGLE 217
           E+LYMGNSF  WE EG    +NNA L+EL  LS L+TL M I DA  MP++LFS    LE
Sbjct: 638 EDLYMGNSFVKWETEGSSSQRNNACLSELKHLSNLSTLHMQITDADNMPKDLFSSFQNLE 697

Query: 218 RNKIFLGDVWSWTGKYETSRTLKLKLDNRMYLEHGIKMLLRRTEDLHLDKLNGLQNVLHE 277
           R +IF+GD W W+ K  TSRTLKLKL+  + LE G+  LL+ TE+LHL +LNG++++L++
Sbjct: 698 RFRIFIGDGWDWSVKDATSRTLKLKLNTVIQLEEGVNTLLKITEELHLQELNGVKSILND 757

Query: 278 LDGEGFPRLKHLLVQNASEILYIVSSV 304
           LDGEGFP+L+HL VQN   + YI++S+
Sbjct: 758 LDGEGFPQLRHLHVQNCPGVQYIINSI 784

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224125154|ref|XP_002319513.1| cc-nbs-lrr resistance protein [Populus trichocarpa] gi|222857889|gb|EEE95436.1| cc-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  270 bits (691), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 155/325 (47%), Positives = 206/325 (63%), Gaps = 23/325 (7%)

Query: 1   MHDVVHDIAVSTA-RDKHMFNIQIISDLREVFEDLMQKDPIAISHPCRDIQELPEKLECP 59
           MHDVVH  A   A RD H+F +   + L+E  +  M +   AIS P   I  LPE L  P
Sbjct: 464 MHDVVHGFAAFVASRDHHVFTLASDTVLKEWPD--MPEQCSAISLPRCKIPGLPEVLNFP 521

Query: 60  KLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTL---------------- 103
           K + F L++E  SL IPD  F+G  +LQ++ +     P+LPS+L                
Sbjct: 522 KAESFILYNEDPSLKIPDSLFKGTKTLQLVDMTAVQLPTLPSSLQFLEKLQTLCLDSCGL 581

Query: 104 GDVATVGVLKKLVIFSFRNSHIEQLPEEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRL 163
            D+A +G LK L + S  +S+I +LP EIGQLTRL+LLDLS   +L+ I PNV+S L +L
Sbjct: 582 KDIAMIGELKMLKVLSLIDSNIVRLPREIGQLTRLQLLDLSNNPRLEMIPPNVLSCLTQL 641

Query: 164 EELYMGNSFTHWEVEG----QNNASLAELNQLSRLTTLEMLILDAQVMPRELFSLGLERN 219
           E+LYM NSF  W +EG    +NNASLAEL  L  L+TL + I D  ++PR+ FS  LER 
Sbjct: 642 EDLYMENSFLQWRIEGLDSQRNNASLAELKYLPNLSTLHLHITDPMILPRDFFSKKLERF 701

Query: 220 KIFLGDVWSWTGKYETSRTLKLKLDNRMYLEHGIKMLLRRTEDLHLDKLNGLQNVLHELD 279
           KI +G+ W W+ K ETS T+KLK+   +  E GI++LL+RTEDLHLD L G+++V +ELD
Sbjct: 702 KILIGEGWDWSRKRETSTTMKLKISASIQSEEGIQLLLKRTEDLHLDGLKGVKSVSYELD 761

Query: 280 GEGFPRLKHLLVQNASEILYIVSSV 304
           G+GFPRLKHL +QN+ EI YIV S 
Sbjct: 762 GQGFPRLKHLHIQNSLEIRYIVDST 786

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255574526|ref|XP_002528174.1| Disease resistance protein RFL1, putative [Ricinus communis] gi|223532386|gb|EEF34181.1| Disease resistance protein RFL1, putative [Ricinus communis]

 Score =  264 bits (674), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 150/327 (45%), Positives = 204/327 (62%), Gaps = 20/327 (6%)

Query: 1   MHDVVHDIAVSTA-RDKHMFNIQIISDLREVFEDLMQKDPIAISHPCRDIQELPEKLECP 59
           +HD++ D AVS A R++ +F I     L    ++   K    IS PC ++ +LPE LE P
Sbjct: 454 IHDLIQDFAVSIAYREQQVFTINNYIRLEVWPDEDALKSCTRISLPCLNVVKLPEVLESP 513

Query: 60  KLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLG--------------- 104
            L+   L +E+ SL IP  FF+G+P L+VL   G  F SLP +LG               
Sbjct: 514 NLEFLLLSTEEPSLRIPGSFFQGIPILKVLDFCGMSFSSLPPSLGCLEHLRTLCLDHCLL 573

Query: 105 -DVATVGVLKKLVIFSFRNSHIEQLPEEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRL 163
            D+A +G LKKL I +F +S I +LP EIG+L+RLKLLDLS CSKL     NV+S L  L
Sbjct: 574 HDIAIIGELKKLEILTFAHSDIVELPREIGELSRLKLLDLSHCSKLNVFPANVLSRLCLL 633

Query: 164 EELYMGNSFTHWEVEG---QNNASLAELNQLSRLTTLEMLILDAQVMPRELFSLGLERNK 220
           EELYM NSF  W++EG   Q+NASL EL  LS LT+LE+ ILDA+++PR+LF+  L+R K
Sbjct: 634 EELYMANSFVRWKIEGLMNQSNASLDELVLLSHLTSLEIQILDARILPRDLFTKKLQRYK 693

Query: 221 IFLGDVWSWTGKYETSRTLKLKLDNRMYLEHGIKMLLRRTEDLHLDKLNGLQNVLHELDG 280
           I +GD W W G  ETSR LKLKL+  ++ E+ +   L  T+DL L    G+ ++L+ L+ 
Sbjct: 694 ILIGDEWDWNGHDETSRVLKLKLNTSIHSEYEVNQFLEGTDDLSLADARGVNSILYNLNS 753

Query: 281 EGFPRLKHLLVQNASEILYIVSSVEGA 307
           EGFP+LK L+VQN  EI  +V++ E  
Sbjct: 754 EGFPQLKRLIVQNCPEIHCLVNASESV 780

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147865073|emb|CAN83232.1| hypothetical protein VITISV_021876 [Vitis vinifera]

 Score =  261 bits (667), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 158/326 (48%), Positives = 209/326 (64%), Gaps = 22/326 (6%)

Query: 1   MHDVVHDIAVS-TARDKHMFNIQIISDLREVFE--DLMQKDPIAISHPCRDIQELPEKLE 57
           MHDVV  +A+  +++D H+F +Q  +   E +   D +QK  I ++    DI ELPE L 
Sbjct: 464 MHDVVRSVALDISSKDHHVFTLQQTTGRVEKWPRIDELQK-VIWVNQDECDIHELPEGLV 522

Query: 58  CPKLKLFFLFSEKLSLV-IPDLFFEGVPSLQVLSLNGFHFPSLPSTL------------- 103
           CPKLKLF    +  S V IP+ FFEG+  LQVL     H PSLPS+L             
Sbjct: 523 CPKLKLFICCLKTNSAVKIPNTFFEGMKQLQVLDFTQMHLPSLPSSLQCLANLQTLLLYG 582

Query: 104 ---GDVATVGVLKKLVIFSFRNSHIEQLPEEIGQLTRLKLLDLSTCSKLKSIRPNVISNL 160
              GD+  +  LKKL I S  +S IEQLP EI QLT L+LLDLS  S +K I   VIS+L
Sbjct: 583 CKLGDIGIITELKKLEILSLIDSDIEQLPREIAQLTHLRLLDLSDSSTIKVIPSGVISSL 642

Query: 161 PRLEELYMGNSFTHWEVEGQNNASLAELNQLSRLTTLEMLILDAQVMPRELFSLGLERNK 220
            +LE+L M NSFT WE EG++NA LAEL  LS LT+L++ I DA+++P+++    L R +
Sbjct: 643 SQLEDLCMENSFTQWEGEGKSNACLAELKHLSHLTSLDIQIPDAKLLPKDVVFENLVRYR 702

Query: 221 IFLGDVWSWTGKYETSRTLKL-KLDNRMYLEHGIKMLLRRTEDLHLDKLNGLQNVLHELD 279
           IF+GDVW W   Y+T+RTLKL K D  ++L  GI  LL+ TEDLHL +L G  NVL +LD
Sbjct: 703 IFVGDVWIWEENYKTNRTLKLKKFDTSLHLVDGISKLLKITEDLHLRELCGGTNVLSKLD 762

Query: 280 GEGFPRLKHLLVQNASEILYIVSSVE 305
           GEGF +LKHL V+++ EI YIV+S++
Sbjct: 763 GEGFFKLKHLNVESSPEIQYIVNSLD 788

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359488101|ref|XP_002263761.2| PREDICTED: disease resistance protein At4g27190-like [Vitis vinifera]

 Score =  257 bits (656), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 157/327 (48%), Positives = 210/327 (64%), Gaps = 23/327 (7%)

Query: 1   MHDVVHDIAVSTARDKH-MFNIQIISDLREVFE--DLMQKDPIAISHPCRDIQELPEKLE 57
           MHD+V   A   A D+H +F +Q  +   E +   D +QK      H C DI+ELPE L 
Sbjct: 465 MHDLVRSTARKIASDQHHVFTLQNTTVRVEGWPRIDELQKVTSVSLHDC-DIRELPEGLV 523

Query: 58  CPKLKLFFLF--SEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTL------------ 103
           CPKL+LF  +  +  L++ IP+ FFE +  L+VL L+    PSLP +L            
Sbjct: 524 CPKLELFGCYDVNTNLAVQIPNKFFEEMKQLKVLDLSRMQLPSLPLSLHCLTNLRTLCLN 583

Query: 104 ----GDVATVGVLKKLVIFSFRNSHIEQLPEEIGQLTRLKLLDLSTCSKLKSIRPNVISN 159
               GD+  +  LKKL I S  +S +EQLP EI QLT L+LLDLS  SKLK I   VIS+
Sbjct: 584 GCKVGDIVIIAKLKKLEILSLIDSDMEQLPREIAQLTHLRLLDLSGSSKLKVIPSGVISS 643

Query: 160 LPRLEELYMGNSFTHWEVEGQNNASLAELNQLSRLTTLEMLILDAQVMPRELFSLGLERN 219
           L +LE L M NSFT WE EG++NA LAEL  LS LT+L++ I DA+++P+++    L R 
Sbjct: 644 LSQLENLCMANSFTQWEGEGKSNACLAELKHLSHLTSLDIQIRDAKLLPKDIVFDNLVRY 703

Query: 220 KIFLGDVWSWTGKYETSRTLKL-KLDNRMYLEHGIKMLLRRTEDLHLDKLNGLQNVLHEL 278
           +IF+GDVWSW   +ET++TLKL KLD  ++L  GI  LL+RTEDLHL +L G  NVL +L
Sbjct: 704 RIFVGDVWSWREIFETNKTLKLNKLDTSLHLVDGIIKLLKRTEDLHLHELCGGTNVLSKL 763

Query: 279 DGEGFPRLKHLLVQNASEILYIVSSVE 305
           DGEGF +LKHL V+++ EI YIV+S++
Sbjct: 764 DGEGFLKLKHLNVESSPEIQYIVNSMD 790

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359488025|ref|XP_003633688.1| PREDICTED: uncharacterized protein LOC100852821 [Vitis vinifera]

 Score =  256 bits (653), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 154/327 (47%), Positives = 208/327 (63%), Gaps = 23/327 (7%)

Query: 1   MHDVVHDIAVSTARDKH-MFNIQIISDLREVFE--DLMQKDPIAISHPCRDIQELPEKLE 57
           MHD+V   A   A D+H +F +Q  +   E +   D +QK      H C DI ELPE L 
Sbjct: 464 MHDLVRSTARKIASDQHHVFTLQNTTVRVEGWPRIDELQKVTWVSLHDC-DIHELPEGLV 522

Query: 58  CPKLKLFFLF--SEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTL------------ 103
           CPKL+LF  +  +   ++ IP+ FFE +  L+VL L+    PSLP +L            
Sbjct: 523 CPKLELFGCYDVNTNSAVQIPNKFFEEMKQLKVLDLSRMQLPSLPLSLHCLTNLRTLCLD 582

Query: 104 ----GDVATVGVLKKLVIFSFRNSHIEQLPEEIGQLTRLKLLDLSTCSKLKSIRPNVISN 159
               GD+  +  LKKL I S ++S +EQLP EI QLT L+LLDLS  SKLK I  +VIS+
Sbjct: 583 GCKVGDIVIIAKLKKLEILSLKDSDMEQLPREIAQLTHLRLLDLSGSSKLKVIPSDVISS 642

Query: 160 LPRLEELYMGNSFTHWEVEGQNNASLAELNQLSRLTTLEMLILDAQVMPRELFSLGLERN 219
           L +LE L M NSFT WE E ++NA LAEL  LS LT+L++ I DA+++P+++    L R 
Sbjct: 643 LSQLENLCMANSFTQWEGEAKSNACLAELKHLSHLTSLDIQIRDAKLLPKDIVFDNLVRY 702

Query: 220 KIFLGDVWSWTGKYETSRTLKL-KLDNRMYLEHGIKMLLRRTEDLHLDKLNGLQNVLHEL 278
           +IF+GDVW W   +ET++TLKL K D  ++L HGI  LL+RTEDLHL +L G  NVL +L
Sbjct: 703 RIFVGDVWRWRENFETNKTLKLNKFDTSLHLVHGIIKLLKRTEDLHLRELCGGTNVLSKL 762

Query: 279 DGEGFPRLKHLLVQNASEILYIVSSVE 305
           DGEGF +LKHL V+++ EI YIV+S++
Sbjct: 763 DGEGFLKLKHLNVESSPEIQYIVNSMD 789

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359488103|ref|XP_002263579.2| PREDICTED: disease resistance protein At4g27190-like [Vitis vinifera]

 Score =  249 bits (636), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 149/327 (45%), Positives = 201/327 (61%), Gaps = 25/327 (7%)

Query: 1   MHDVVHDIAVSTARDKHMFNIQIISDLREVFEDLMQKDPIAIS----HPCRDIQELPEKL 56
           MHD+V   A   A ++H       + +R   E+  + D + ++    H C DI ELPE L
Sbjct: 464 MHDLVRSTARKIASEQHHVFTHQKTTVR--VEEWSRIDELQVTWVKLHHC-DIHELPEGL 520

Query: 57  ECPKLKLFFLF-SEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLP--------------- 100
            CPKL+ F  F    L++ IP+ FFEG+  L+VL L G   PSLP               
Sbjct: 521 VCPKLEFFECFLKTNLAVKIPNTFFEGMKQLKVLDLTGMQLPSLPLSLQSLANLRTLCLD 580

Query: 101 -STLGDVATVGVLKKLVIFSFRNSHIEQLPEEIGQLTRLKLLDLSTCSKLKSIRPNVISN 159
              LGD+  +  LKKL I S  +S IEQLP EI QLT L+L DL +  KLK I  +VIS+
Sbjct: 581 GCKLGDIVIIAELKKLEILSLMDSDIEQLPREIAQLTHLRLFDLKSSFKLKVIPSDVISS 640

Query: 160 LPRLEELYMGNSFTHWEVEGQNNASLAELNQLSRLTTLEMLILDAQVMPRELFSLGLERN 219
           L RLE+L M NSFT WE EG++NA LAEL  LS LT L++ I DA+++P+++    L R 
Sbjct: 641 LFRLEDLCMENSFTQWEGEGKSNACLAELKHLSHLTALDIQIPDAKLLPKDMVFDNLMRY 700

Query: 220 KIFLGDVWSWTGKYETSRTLKL-KLDNRMYLEHGIKMLLRRTEDLHLDKLNGLQNVLHEL 278
           +IF+GD+W W   Y+T+R LKL K D  ++L  GI  LL+RTEDLHL +L G  NVL +L
Sbjct: 701 RIFVGDIWIWEKNYKTNRILKLNKFDTSLHLVDGISKLLKRTEDLHLRELCGGTNVLSKL 760

Query: 279 DGEGFPRLKHLLVQNASEILYIVSSVE 305
           + EGF +LKHL V+++ EI YIV+S++
Sbjct: 761 NREGFLKLKHLNVESSPEIQYIVNSMD 787

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359488108|ref|XP_003633701.1| PREDICTED: disease resistance protein At4g27190-like [Vitis vinifera]

 Score =  248 bits (632), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 151/327 (46%), Positives = 205/327 (62%), Gaps = 23/327 (7%)

Query: 1   MHDVVHDIAVSTARDKH-MFNIQIISDLREVFE--DLMQKDPIAISHPCRDIQELPEKLE 57
           MHD+V   A   A D+H +F +Q  +   E +   D +QK      H C DI+ELPE L 
Sbjct: 469 MHDLVRSTARKIASDQHHVFTLQNTTVRVEGWPRIDELQKVTWVSLHDC-DIRELPEGLA 527

Query: 58  CPKLKLFFLF--SEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLP--------------- 100
           CPKL+LF  +  +   ++ IP+ FFE +  L+VL L+    PSLP               
Sbjct: 528 CPKLELFGCYDVNTNSAVQIPNNFFEEMKQLKVLDLSRMQLPSLPLSCHCRTNLRTLCLD 587

Query: 101 -STLGDVATVGVLKKLVIFSFRNSHIEQLPEEIGQLTRLKLLDLSTCSKLKSIRPNVISN 159
              LG++  +  LKKL I S   S IE+LP EI QLT L+L DL    KLK I P+VIS+
Sbjct: 588 GCNLGEIVIIAELKKLEILSLTYSDIEKLPREIAQLTHLRLFDLKGSYKLKVIPPDVISS 647

Query: 160 LPRLEELYMGNSFTHWEVEGQNNASLAELNQLSRLTTLEMLILDAQVMPRELFSLGLERN 219
           L +LE+L M NSFT WE EG++NA LAEL  LS LT+L++ I DA+++P+++    L R 
Sbjct: 648 LSQLEDLCMENSFTQWEGEGKSNACLAELKHLSHLTSLDIQIPDAKLLPKDIVFDTLVRY 707

Query: 220 KIFLGDVWSWTGKYETSRTLKL-KLDNRMYLEHGIKMLLRRTEDLHLDKLNGLQNVLHEL 278
           +IF+GDVWSW G  E ++TL+L K D  ++L  GI  LL+RTEDLHL +L G  NVL +L
Sbjct: 708 RIFVGDVWSWGGISEANKTLQLNKFDTSLHLVDGIIKLLKRTEDLHLRELCGGTNVLSKL 767

Query: 279 DGEGFPRLKHLLVQNASEILYIVSSVE 305
           DGEGF +LKHL V+++ EI YIV+S++
Sbjct: 768 DGEGFLKLKHLNVESSPEIQYIVNSMD 794

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	308
TAIR|locus:2136447	985	AT4G27190 [Arabidopsis thalian	0.672	0.210	0.264	5e-10
TAIR|locus:2005517	909	RPS2 "RESISTANT TO P. SYRINGAE	0.435	0.147	0.321	9.5e-08
DICTYBASE|DDB_G0284461	623	DDB_G0284461 "leucine-rich rep	0.525	0.260	0.329	8.2e-06
UNIPROTKB|P93194	1109	INRPK1 "Receptor-like protein	0.662	0.183	0.271	8.1e-05
TAIR|locus:2078012	852	ZAR1 "HOPZ-ACTIVATED RESISTANC	0.279	0.100	0.333	0.0001
TAIR|locus:2086979	890	RLP42 "receptor like protein 4	0.655	0.226	0.267	0.00013
TAIR|locus:2163593	1167	AT5G45520 "AT5G45520" [Arabido	0.577	0.152	0.280	0.00024
TAIR|locus:2117617	549	PIRL4 "plant intracellular ras	0.607	0.340	0.290	0.00043
ZFIN|ZDB-GENE-060526-97	721	lrsam1 "leucine rich repeat an	0.474	0.202	0.304	0.00049
TAIR|locus:2167948	966	ERL1 "ERECTA-like 1" [Arabidop	0.318	0.101	0.321	0.0007

TAIR|locus:2136447 AT4G27190 [Arabidopsis thaliana (taxid:3702)]

 Score = 172 (65.6 bits), Expect = 5.0e-10, P = 5.0e-10
 Identities = 58/219 (26%), Positives = 101/219 (46%)

Query:    84 PSLQVLSLNGFHFPSLPST--LGDVATVGVLKKLVIFSFRNSHIEQLPEEIGQLTRLKLL 141
             PS  +L L   H   L     L  + ++  L KL +     +HI + P  + +L R + L
Sbjct:   566 PSCSLLRLFSLHSLFLRDCFKLVKLPSLETLAKLELLDLCGTHILEFPRGLEELKRFRHL 625

Query:   142 DLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEVEGQNNASLAELNQLSRLTTLEMLI 201
             DLS    L+SI   V+S L  LE L M +S   W V+G+     A + ++  L  L++L 
Sbjct:   626 DLSRTLHLESIPARVVSRLSSLETLDMTSSHYRWSVQGETQKGQATVEEIGCLQRLQVLS 685

Query:   202 LDAQVMP-----RELFSLGLERNKIFLGDVWSWTGKYETSRTLKLKLDNRMYLEHGIKML 256
             +     P     R  +   L++ ++ +G  +    +++  R   L + +    +  I  L
Sbjct:   686 IRLHSSPFLLNKRNTWIKRLKKFQLVVGSRYILRTRHDKRR---LTISHLNVSQVSIGWL 742

Query:   257 LRRTEDLHLDKLNGLQNVLHEL--DGEGFPRLKHLLVQN 293
             L  T  L L+   G++ ++ +L  D +GF  LK L ++N
Sbjct:   743 LAYTTSLALNHCQGIEAMMKKLVSDNKGFKNLKSLTIEN 781

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2005517 RPS2 "RESISTANT TO P. SYRINGAE 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 152 (58.6 bits), Expect = 9.5e-08, P = 9.5e-08
 Identities = 47/146 (32%), Positives = 74/146 (50%)

Query:    75 IPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKKLVIFSFRNSHIEQLPEEIGQ 134
             IP  FF  +P L+VL L+      +P       ++  L +L   S   + I  LP+E+G 
Sbjct:   549 IPTGFFMHMPVLRVLDLSFTSITEIP------LSIKYLVELYHLSMSGTKISVLPQELGN 602

Query:   135 LTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEVE--GQNNAS---LAELN 189
             L +LK LDL     L++I  + I  L +LE L +  S+  WE++  G++ A     A+L 
Sbjct:   603 LRKLKHLDLQRTQFLQTIPRDAICWLSKLEVLNLYYSYAGWELQSFGEDEAEELGFADLE 662

Query:   190 QLSRLTTLEMLILDAQVMPRELFSLG 215
              L  LTTL + +L  + + + LF  G
Sbjct:   663 YLENLTTLGITVLSLETL-KTLFEFG 687

GO:0000166 "nucleotide binding" evidence=IEA

GO:0006952 "defense response" evidence=ISS;TAS

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0009626 "plant-type hypersensitive response" evidence=IMP

GO:0016045 "detection of bacterium" evidence=RCA;IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005886 "plasma membrane" evidence=IDA

GO:0042742 "defense response to bacterium" evidence=RCA;IMP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0045087 "innate immune response" evidence=RCA

GO:0050776 "regulation of immune response" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

GO:0051707 "response to other organism" evidence=RCA

DICTYBASE|DDB_G0284461 DDB_G0284461 "leucine-rich repeat-containing protein (LRR)" [Dictyostelium discoideum (taxid:44689)]

 Score = 133 (51.9 bits), Expect = 8.2e-06, P = 8.2e-06
 Identities = 63/191 (32%), Positives = 96/191 (50%)

Query:    76 PDLFFEGVPSLQVLSLNGFH----FPSLPS-----TL---GD-VATV-GV---LKKLVIF 118
             PD  F+ VP++Q + L GF+    FPSL S     TL   G+ + TV G    L KL + 
Sbjct:   166 PDFLFDHVPNVQDIDL-GFNQFKMFPSLISFKKLTTLVLNGNYILTVPGEVLDLPKLKVL 224

Query:   119 SFRNSHIEQLPEEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYM-GNSFTHWEV 177
             S   +H+  LP EI +L  L+ L+++  +K+  + P  I+NLP+LEEL + GN  T    
Sbjct:   225 SINGNHLISLPSEISKLVSLEKLEIAN-NKITELCPE-IANLPKLEELIISGNPLTKLP- 281

Query:   178 EGQNNASLAELNQLSRL-TTLEMLILDAQVMPRELFSLGLERNKIFLGDVWSWTGKYETS 236
                N +SL  L  L      L  L  D  +M + L  + L  NK+   ++ +  G+    
Sbjct:   282 --PNFSSLTSLEVLDASGCQLIRLPEDFSMMTK-LLEVNLGNNKLV--ELPNHIGRLTRL 336

Query:   237 RTLKLKLDNRM 247
               L L +DN++
Sbjct:   337 VILNL-MDNKL 346

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|P93194 INRPK1 "Receptor-like protein kinase" [Ipomoea nil (taxid:35883)]

 Score = 127 (49.8 bits), Expect = 8.1e-05, P = 8.1e-05
 Identities = 60/221 (27%), Positives = 102/221 (46%)

Query:    75 IPDLFFEGVPSLQVLSLNGFHFPS-LPSTLGDVATVGVLKKLVIFSFRNSHIEQLPEEIG 133
             +PD F E   +L    L+G +F   +P +LG++  V       I+   N     +P E+G
Sbjct:   492 LPD-FVEK-QNLLFFDLSGNNFTGPIPPSLGNLKNV-----TAIYLSSNQLSGSIPPELG 544

Query:   134 QLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEVEGQNNASLAELNQLSR 193
              L +L+ L+LS  + LK I P+ +SN  +L EL   ++  +  +      SL EL +LS 
Sbjct:   545 SLVKLEHLNLSH-NILKGILPSELSNCHKLSELDASHNLLNGSIPS-TLGSLTELTKLSL 602

Query:   194 -LTTLEMLILDAQVMPRELFSLGLERNKIFLGDVWSWTGKYETSRTLKL---KLDNRMYL 249
                +    I  +     +L +L L  N +  GD+    G  +  R+L L   KL+ ++ +
Sbjct:   603 GENSFSGGIPTSLFQSNKLLNLQLGGN-LLAGDIPP-VGALQALRSLNLSSNKLNGQLPI 660

Query:   250 EHGIKMLLRRTEDLHLDKLNGLQNVLHELDGEGFPRLKHLL 290
             + G   +L   +  H + L+G   VL  +    F  + H L
Sbjct:   661 DLGKLKMLEELDVSH-NNLSGTLRVLSTIQSLTFINISHNL 700

GO:0005524 "ATP binding" evidence=NAS

GO:0005576 "extracellular region" evidence=NAS

GO:0005886 "plasma membrane" evidence=NAS

GO:0006468 "protein phosphorylation" evidence=NAS

GO:0019199 "transmembrane receptor protein kinase activity" evidence=NAS

TAIR|locus:2078012 ZAR1 "HOPZ-ACTIVATED RESISTANCE 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 86 (35.3 bits), Expect = 0.00010, Sum P(2) = 0.00010
 Identities = 31/93 (33%), Positives = 47/93 (50%)

Query:   148 KLKSIR-PNVIS-NLPRLEELYMGNSFTHWEVEGQNNASLAELNQLSRLTTLEMLIL--- 202
             KL  +R  ++ S NL +++E + GN  THW +EG   +SL++L+    +    M  L   
Sbjct:   762 KLPMLRYMSICSGNLVKMQEPFWGNENTHWRIEGLMLSSLSDLDMDWEVLQQSMPYLRTV 821

Query:   203 DAQVMPRELFSLGLERNKIFLGDVWSWTGKYET 235
              A   P EL S  +E +  F G VW  T  + T
Sbjct:   822 TANWCP-ELESFAIE-DVGFRGGVWMKTPLHRT 852

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2086979 RLP42 "receptor like protein 42" [Arabidopsis thaliana (taxid:3702)]

 Score = 124 (48.7 bits), Expect = 0.00013, P = 0.00013
 Identities = 60/224 (26%), Positives = 104/224 (46%)

Query:    79 FFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKKLVIFSFRNSHI--EQLPEEIGQLT 136
             F   +  L+VL ++  HF  +   L   +++  L  L+  + R ++     LP E G L 
Sbjct:   165 FVRNLRKLRVLDVSYNHFSGI---LNPNSSLFELHHLIYLNLRYNNFTSSSLPYEFGNLN 221

Query:   137 RLKLLDLSTCSKLKSIRPNVISNLPRLEELYMG-NSFTHWEVEGQNNASLAELNQLSRLT 195
             +L++LD+S+ S    + P  ISNL +L ELY+  N FT          SL  +  L++L+
Sbjct:   222 KLEVLDVSSNSFFGQVPPT-ISNLTQLTELYLPLNDFT---------GSLPLVQNLTKLS 271

Query:   196 TLEMLILD-AQVMPRELFSLGLERNKIFLGDVWSWTGKYETSRTLKLKLDNRMYL--EHG 252
              L +     +  +P  LF++    + I+L    + +G  E   +        +YL   H 
Sbjct:   272 ILHLFGNHFSGTIPSSLFTMPF-LSSIYLNKN-NLSGSIEVPNSSSSSRLEHLYLGKNHL 329

Query:   253 IKMLLRRTEDLHLDKLN-GLQNVLHELDGEGFPRLKHLLVQNAS 295
              K+L    + ++L +L+    N  H +D   F  LK LL+ + S
Sbjct:   330 GKILEPIAKLVNLKELDLSFLNTSHPIDLSLFSSLKSLLLLDLS 373

GO:0005576 "extracellular region" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2163593 AT5G45520 "AT5G45520" [Arabidopsis thaliana (taxid:3702)]

 Score = 123 (48.4 bits), Expect = 0.00024, P = 0.00024
 Identities = 53/189 (28%), Positives = 86/189 (45%)

Query:    79 FFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKKLVIFSFRNSH-IEQLPEEIGQLTR 137
             F + + SL+ L L  F   S    L +  ++  L +LVI   +  + +E LP +IG   +
Sbjct:   406 FLKNMKSLKNLRLASFQGISRIERLEN--SICALPELVILDLKACYNLEVLPSDIGLFEK 463

Query:   138 LKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEVEGQNNASLAELNQLSRLT-T 196
             L  LD+S C  L  + P  I+ L RL+ L     F   E + +NN ++  L  L +L+ T
Sbjct:   464 LIYLDVSECYMLDRM-PKGIAKLSRLQVL---KGFVISESDHENNCAVKHLVNLRKLSIT 519

Query:   197 LEMLILDAQVMPRELFSL-GLERNKIFLGDVWSWTGKYETSRTLKLKLDNR--MYLEHGI 253
             +       + +   L  L GLE  KI  G         E+  T   K +N+  +  +  +
Sbjct:   520 VNKYSFKVESLMESLTGLQGLESLKIAWGACEEPNEAVESRETTNEKKENQGGLATDKKL 579

Query:   254 KMLLRRTED 262
             K L+ R +D
Sbjct:   580 KDLMEREDD 588

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2117617 PIRL4 "plant intracellular ras group-related LRR 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 117 (46.2 bits), Expect = 0.00043, P = 0.00043
 Identities = 59/203 (29%), Positives = 97/203 (47%)

Query:    75 IPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKKLVIFSFRNSHIEQLPEEIGQ 134
             +PD   + + SL  L L+  H   LP+T+G +++   L KL + S R   I QLPE IG+
Sbjct:   238 LPDSLGK-LSSLTSLDLSENHIVVLPNTIGGLSS---LTKLDLHSNR---IGQLPESIGE 290

Query:   135 LTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEVEGQNNASLAELNQLSRL 194
             L  L  L+L + ++L S+ P+  S L RLEEL +  S  +  +  ++  SL  L +L  +
Sbjct:   291 LLNLVYLNLGS-NQLSSL-PSAFSRLVRLEELDL--SCNNLPILPESIGSLVSLKKLD-V 345

Query:   195 TTLEMLILDAQVMP-RELFSLGLERNKIFLGDVWSWTGKYETSRTLKLKLDNRMYLEHGI 253
              T ++  +   +     L  L  + NK  L  +    GK  T   L ++ +N   L   +
Sbjct:   346 ETNDIEEIPYSIGGCSSLIELRADYNK--LKALPEAIGKITTLEILSVRYNNIRQLPTTM 403

Query:   254 KMLLRRTE-DLHLDKLNGLQNVL 275
               L    E D+  ++L  +   L
Sbjct:   404 SSLASLKELDVSFNELESVPESL 426

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

GO:0009740 "gibberellic acid mediated signaling pathway" evidence=RCA

GO:0010162 "seed dormancy process" evidence=RCA

ZFIN|ZDB-GENE-060526-97 lrsam1 "leucine rich repeat and sterile alpha motif containing 1" [Danio rerio (taxid:7955)]

 Score = 118 (46.6 bits), Expect = 0.00049, P = 0.00049
 Identities = 50/164 (30%), Positives = 79/164 (48%)

Query:    75 IPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKKLVIFSFRNSHIEQLPEEIGQ 134
             +P   F     LQ   L   H   L S +     +G L  L +     + +  LP+EIGQ
Sbjct:    43 VPSCAFSMCKVLQKKVLI-LHTNDLRSLVPKGCCLGALATLKVLDLHENKLTSLPDEIGQ 101

Query:   135 LTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYM-GNSFTHWEVE-GQNNA--------- 183
             L+ L++L+    +++K + P+ I  L  L+ L + GN  T   V  G+ ++         
Sbjct:   102 LSSLQVLNAEK-NQIKQL-PDTIGGLLHLQTLNVKGNCLTVLPVSVGRMSSLRTLDISEN 159

Query:   184 SLAEL-NQLSRLTTLEMLILDAQVM---PRELFSLGLERNKIFL 223
             S+ EL  +L+ + TLE LILDAQVM   P  + + G E  + +L
Sbjct:   160 SIRELPKELASVRTLESLILDAQVMSFPPASVCTGGTEEVQRYL 203

GO:0008270 "zinc ion binding" evidence=IEA

GO:0048666 "neuron development" evidence=IMP

TAIR|locus:2167948 ERL1 "ERECTA-like 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 118 (46.6 bits), Expect = 0.00070, P = 0.00070
 Identities = 35/109 (32%), Positives = 57/109 (52%)

Query:    85 SLQVLSLNGFHFP-SLPSTLGDVATVGVLKKLVIFSFRNSHIE-QLPEEIGQLTRLKLLD 142
             +L  L L+G +F  S+P TLGD      L+ L+I +   +H+  QLP E G L  ++++D
Sbjct:   431 NLDKLDLSGNNFSGSIPLTLGD------LEHLLILNLSRNHLSGQLPAEFGNLRSIQMID 484

Query:   143 LSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEVEGQ--NNASLAELN 189
             +S  + L  + P  +  L  L  L + N+  H ++  Q  N  +L  LN
Sbjct:   485 VSF-NLLSGVIPTELGQLQNLNSLILNNNKLHGKIPDQLTNCFTLVNLN 532

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0010103 "stomatal complex morphogenesis" evidence=IGI;RCA

GO:0009553 "embryo sac development" evidence=IGI

GO:0048481 "ovule development" evidence=IGI;RCA

GO:0016020 "membrane" evidence=IDA

GO:0001708 "cell fate specification" evidence=RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

GO:0009886 "post-embryonic morphogenesis" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0048441 "petal development" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

GO:0048507 "meristem development" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.03110007 cc-nbs-lrr resistance protein (1315 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	308
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	5e-04
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	0.001

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 37.1 bits (87), Expect = 5e-04
 Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 5/60 (8%)

Query: 112 LKKLVIFSFRNSHIEQLPEEI-GQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGN 170
           LK L +    N+ +  +P+     L  LK+LDLS  + L SI P   S LP L  L +  
Sbjct: 2   LKSLDL---SNNRLTVIPDGAFKGLPNLKVLDLS-GNNLTSISPEAFSGLPSLRSLDLSG 57

Length = 60

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 39.8 bits (93), Expect = 0.001
 Identities = 45/160 (28%), Positives = 69/160 (43%), Gaps = 25/160 (15%)

Query: 59  PKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFP-SLPSTLGDVATVGVLKKLVI 117
           P ++   L + +LS  IPD  F    SL+ L+L+  +F  S+P         G +  L  
Sbjct: 93  PYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--------GSIPNLET 144

Query: 118 FSFRNSHIE-QLPEEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMG-NSFT-- 173
               N+ +  ++P +IG  + LK+LDL     +  I PN ++NL  LE L +  N     
Sbjct: 145 LDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKI-PNSLTNLTSLEFLTLASNQLVGQ 203

Query: 174 -----------HWEVEGQNNASLAELNQLSRLTTLEMLIL 202
                       W   G NN S     ++  LT+L  L L
Sbjct: 204 IPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDL 243

Length = 968

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	308
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.87
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.87
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.87
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.86
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.84
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.84
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.8
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.78
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.78
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.76
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.75
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.71
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.71
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.7
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.68
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.66
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.62
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.62
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.54
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.51
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.4
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.37
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.37
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.29
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.28
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.23
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.22
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.13
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.08
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.03
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.02
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.01
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.96
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.93
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.91
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.84
PLN03150	623	hypothetical protein; Provisional	98.8
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.74
PLN03150	623	hypothetical protein; Provisional	98.7
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.6
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.54
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.53
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.53
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.42
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.38
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.38
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.27
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.26
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.23
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.21
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.2
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.19
PRK15386	426	type III secretion protein GogB; Provisional	98.17
KOG4341	483	consensus F-box protein containing LRR [General fu	98.07
PRK15386	426	type III secretion protein GogB; Provisional	98.06
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.97
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.93
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.89
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.88
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.82
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.78
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.37
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.21
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.05
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	96.89
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.85
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	96.81
KOG4341	483	consensus F-box protein containing LRR [General fu	96.72
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.4
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.35
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.45
KOG1947	482	consensus Leucine rich repeat proteins, some prote	95.34
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	95.05
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	94.87
KOG3864	221	consensus Uncharacterized conserved protein [Funct	93.83
KOG3864	221	consensus Uncharacterized conserved protein [Funct	92.93
smart00370	26	LRR Leucine-rich repeats, outliers.	92.44
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	92.44
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	91.89
smart00370	26	LRR Leucine-rich repeats, outliers.	91.89
KOG0473	326	consensus Leucine-rich repeat protein [Function un	89.04
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	84.83
KOG0473	326	consensus Leucine-rich repeat protein [Function un	82.97

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.87  E-value=1.4e-22  Score=194.52  Aligned_cols=287  Identities=24%  Similarity=0.282  Sum_probs=213.5

Q ss_pred             ChhHHHHHHHHhhh-----ccccceeecccchhhHhhhhcCCCCeeEEeecCCCCCCCCcCCCCCccEEEecCCCC-cCC
Q 037941            1 MHDVVHDIAVSTAR-----DKHMFNIQIISDLREVFEDLMQKDPIAISHPCRDIQELPEKLECPKLKLFFLFSEKL-SLV   74 (308)
Q Consensus         1 mhd~v~d~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~-~~~   74 (308)
                      |||+|||||.++|+     +++ ..+..+.+..++|+...+...|+..+.++.+..++....+++|++|.+.+|.. ...
T Consensus       483 mHDvvRe~al~ias~~~~~~e~-~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~  561 (889)
T KOG4658|consen  483 MHDVVREMALWIASDFGKQEEN-QIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLE  561 (889)
T ss_pred             eeHHHHHHHHHHhccccccccc-eEEECCcCccccccccchhheeEEEEeccchhhccCCCCCCccceEEEeecchhhhh
Confidence            89999999999998     666 55776778888888888899999999999999988888888999999999872 447


Q ss_pred             CCchhhcCCCCccEEEccCC-CCCCCCCCCCCcccccccccccEEeecCCcCcccchhhhCcCCCCEEecCCCCCCCccC
Q 037941           75 IPDLFFEGVPSLQVLSLNGF-HFPSLPSTLGDVATVGVLKKLVIFSFRNSHIEQLPEEIGQLTRLKLLDLSTCSKLKSIR  153 (308)
Q Consensus        75 ~~~~~~~~l~~L~~L~l~~~-~~~~lp~~~~~~~~l~~l~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~  153 (308)
                      ++..+|..|+.|++||+++| .+.++|..      ++.+.+||||+++++.+.++|..++++.+|.+|++..+..+..+|
T Consensus       562 is~~ff~~m~~LrVLDLs~~~~l~~LP~~------I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~  635 (889)
T KOG4658|consen  562 ISGEFFRSLPLLRVLDLSGNSSLSKLPSS------IGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIP  635 (889)
T ss_pred             cCHHHHhhCcceEEEECCCCCccCcCChH------HhhhhhhhcccccCCCccccchHHHHHHhhheecccccccccccc
Confidence            77888899999999999987 45699999      999999999999999999999999999999999999988666665


Q ss_pred             cchhcCCCCCceEEccCCcccccccCCcccchhhhhcCCCCCEEEeeeccCccccch-hhccCCcee----EeeccC---
Q 037941          154 PNVISNLPRLEELYMGNSFTHWEVEGQNNASLAELNQLSRLTTLEMLILDAQVMPRE-LFSLGLERN----KIFLGD---  225 (308)
Q Consensus       154 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~-~~~~~L~~l----~i~~~~---  225 (308)
                      . ....+.+|++|.+......     .......++..+.+|+.+.+..... .+-.. .....|.++    .+....   
T Consensus       636 ~-i~~~L~~Lr~L~l~~s~~~-----~~~~~l~el~~Le~L~~ls~~~~s~-~~~e~l~~~~~L~~~~~~l~~~~~~~~~  708 (889)
T KOG4658|consen  636 G-ILLELQSLRVLRLPRSALS-----NDKLLLKELENLEHLENLSITISSV-LLLEDLLGMTRLRSLLQSLSIEGCSKRT  708 (889)
T ss_pred             c-hhhhcccccEEEeeccccc-----cchhhHHhhhcccchhhheeecchh-HhHhhhhhhHHHHHHhHhhhhcccccce
Confidence            4 3667999999999876522     2233456777888888888755443 11111 111222221    111111   


Q ss_pred             cccccCCCCcCceEEEeecCchhh-----hhhHHH-HhcccceeecCCccchhhhhhccCCCCCCcccEEeccccccccc
Q 037941          226 VWSWTGKYETSRTLKLKLDNRMYL-----EHGIKM-LLRRTEDLHLDKLNGLQNVLHELDGEGFPRLKHLLVQNASEILY  299 (308)
Q Consensus       226 ~~~~~~~~~~L~~L~L~~~~~~~~-----~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~  299 (308)
                      .......+++|+.|.+..+.....     ...... .|+++..+.+.+|...+...|..   -.|+|+.|.+..|+.++.
T Consensus       709 ~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~---f~~~L~~l~l~~~~~~e~  785 (889)
T KOG4658|consen  709 LISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLL---FAPHLTSLSLVSCRLLED  785 (889)
T ss_pred             eecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccchhh---ccCcccEEEEeccccccc
Confidence            122355677888888777654321     111111 26788888888888888766542   247899999999988888


Q ss_pred             cccCc
Q 037941          300 IVSSV  304 (308)
Q Consensus       300 i~~~~  304 (308)
                      +++..
T Consensus       786 ~i~~~  790 (889)
T KOG4658|consen  786 IIPKL  790 (889)
T ss_pred             CCCHH
Confidence            87643

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.87  E-value=1.6e-21  Score=194.05  Aligned_cols=247  Identities=17%  Similarity=0.222  Sum_probs=121.4

Q ss_pred             cCCCCeeEEeecCCCC-CCCCcC--CCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCC-CCCCCCCCccccc
Q 037941           35 MQKDPIAISHPCRDIQ-ELPEKL--ECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFP-SLPSTLGDVATVG  110 (308)
Q Consensus        35 ~~~~l~~L~l~~~~~~-~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~lp~~~~~~~~l~  110 (308)
                      ..++++.|++++|.+. .+|...  .+++|++|++++|.+++.+|.   ..+++|++|++++|.+. .+|..      ++
T Consensus        91 ~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~---~~l~~L~~L~Ls~n~~~~~~p~~------~~  161 (968)
T PLN00113         91 RLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR---GSIPNLETLDLSNNMLSGEIPND------IG  161 (968)
T ss_pred             CCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc---cccCCCCEEECcCCcccccCChH------Hh
Confidence            4566777777777663 455543  566666666666665544443   23455555555555554 34444      44


Q ss_pred             ccccccEEeecCCcCc-ccchhhhCcCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCcccccccC----------
Q 037941          111 VLKKLVIFSFRNSHIE-QLPEEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEVEG----------  179 (308)
Q Consensus       111 ~l~~L~~L~l~~~~i~-~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~----------  179 (308)
                      .+++|++|++++|.+. .+|..++++++|++|++++|.....+|.. ++++++|+.|++++|.+.+..+.          
T Consensus       162 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~  240 (968)
T PLN00113        162 SFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRE-LGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNH  240 (968)
T ss_pred             cCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChH-HcCcCCccEEECcCCccCCcCChhHhcCCCCCE
Confidence            4455555555554443 44444444444555554444433333333 44444444444444443321110          


Q ss_pred             -------CcccchhhhhcCCCCCEEEeeeccCc-cccchhhc-cCCceeEeeccC----cccccCCCCcCceEEEeecCc
Q 037941          180 -------QNNASLAELNQLSRLTTLEMLILDAQ-VMPRELFS-LGLERNKIFLGD----VWSWTGKYETSRTLKLKLDNR  246 (308)
Q Consensus       180 -------~~~~~~~~l~~l~~L~~L~l~~~~~~-~~p~~~~~-~~L~~l~i~~~~----~~~~~~~~~~L~~L~L~~~~~  246 (308)
                             -....+..++.+++|+.|++++|.+. .+|..+.. .+|+.|++..+.    .+.++..+++|+.|+++.|..
T Consensus       241 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~  320 (968)
T PLN00113        241 LDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNF  320 (968)
T ss_pred             EECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCcc
Confidence                   00012244555566666666655543 34444433 556666554433    233445566666666666544


Q ss_pred             hhhh-hhHHHHhcccceeecCCccchhhhhhccCCCCCCcccEEecccc
Q 037941          247 MYLE-HGIKMLLRRTEDLHLDKLNGLQNVLHELDGEGFPRLKHLLVQNA  294 (308)
Q Consensus       247 ~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c  294 (308)
                      .... ..+.. +++|+.|+++++.....++..+  +.+++|+.|++++|
T Consensus       321 ~~~~~~~~~~-l~~L~~L~L~~n~l~~~~p~~l--~~~~~L~~L~Ls~n  366 (968)
T PLN00113        321 TGKIPVALTS-LPRLQVLQLWSNKFSGEIPKNL--GKHNNLTVLDLSTN  366 (968)
T ss_pred             CCcCChhHhc-CCCCCEEECcCCCCcCcCChHH--hCCCCCcEEECCCC
Confidence            3322 22222 3666777766643322222211  34556666666655

>PLN03210 Resistant to P

Probab=99.87  E-value=4.4e-21  Score=192.17  Aligned_cols=252  Identities=16%  Similarity=0.177  Sum_probs=166.3

Q ss_pred             CCCeeEEeecCCCCCCCCcCCCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCC-CCCCCCCCCCcccccccccc
Q 037941           37 KDPIAISHPCRDIQELPEKLECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFH-FPSLPSTLGDVATVGVLKKL  115 (308)
Q Consensus        37 ~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~lp~~~~~~~~l~~l~~L  115 (308)
                      .++|.|.+.++.+..+|..+...+|+.|++.++.+. .++..+ ..+++|++|+++++. +..+|.       ++.+++|
T Consensus       589 ~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~-~L~~~~-~~l~~Lk~L~Ls~~~~l~~ip~-------ls~l~~L  659 (1153)
T PLN03210        589 PKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLE-KLWDGV-HSLTGLRNIDLRGSKNLKEIPD-------LSMATNL  659 (1153)
T ss_pred             cccEEEEecCCCCCCCCCcCCccCCcEEECcCcccc-cccccc-ccCCCCCEEECCCCCCcCcCCc-------cccCCcc
Confidence            457777777777777887777788888888888765 445444 578888888888764 456664       6677888


Q ss_pred             cEEeecCCc-CcccchhhhCcCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCcc---------------------
Q 037941          116 VIFSFRNSH-IEQLPEEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFT---------------------  173 (308)
Q Consensus       116 ~~L~l~~~~-i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~---------------------  173 (308)
                      ++|++.+|. +..+|..++.+++|+.|++++|..++.+|.. + ++++|+.|++++|..                     
T Consensus       660 e~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~-i-~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i  737 (1153)
T PLN03210        660 ETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTG-I-NLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAI  737 (1153)
T ss_pred             cEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCc-C-CCCCCCEEeCCCCCCccccccccCCcCeeecCCCcc
Confidence            888888765 5577877888888888888887767777764 2 566666666665531                     


Q ss_pred             cccccC----------------------------------------------CcccchhhhhcCCCCCEEEeeecc-Ccc
Q 037941          174 HWEVEG----------------------------------------------QNNASLAELNQLSRLTTLEMLILD-AQV  206 (308)
Q Consensus       174 ~~~~~~----------------------------------------------~~~~~~~~l~~l~~L~~L~l~~~~-~~~  206 (308)
                      ...+..                                              .....+..++++++|+.|++++|. +..
T Consensus       738 ~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~  817 (1153)
T PLN03210        738 EEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLET  817 (1153)
T ss_pred             ccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCe
Confidence            111100                                              001123344455556666665542 455


Q ss_pred             ccchhhccCCceeEeeccC-cccccCCCCcCceEEEeecCchhhhhhHHHHhcccceeecCCccchhhhhhccCCCCCCc
Q 037941          207 MPRELFSLGLERNKIFLGD-VWSWTGKYETSRTLKLKLDNRMYLEHGIKMLLRRTEDLHLDKLNGLQNVLHELDGEGFPR  285 (308)
Q Consensus       207 ~p~~~~~~~L~~l~i~~~~-~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~  285 (308)
                      +|.....++|+.|++..+. ...++....+++.|+|+.|.....+..+.. +++|++|++.+|+.++.++..  ...+++
T Consensus       818 LP~~~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~iP~si~~-l~~L~~L~L~~C~~L~~l~~~--~~~L~~  894 (1153)
T PLN03210        818 LPTGINLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPWWIEK-FSNLSFLDMNGCNNLQRVSLN--ISKLKH  894 (1153)
T ss_pred             eCCCCCccccCEEECCCCCccccccccccccCEeECCCCCCccChHHHhc-CCCCCEEECCCCCCcCccCcc--cccccC
Confidence            5555444556666554432 222333345777777777666555555555 499999999999999986543  367889


Q ss_pred             ccEEecccccccccccc
Q 037941          286 LKHLLVQNASEILYIVS  302 (308)
Q Consensus       286 L~~L~l~~c~~l~~i~~  302 (308)
                      |+.+.+.+|+.++.++.
T Consensus       895 L~~L~l~~C~~L~~~~l  911 (1153)
T PLN03210        895 LETVDFSDCGALTEASW  911 (1153)
T ss_pred             CCeeecCCCcccccccC
Confidence            99999999999987654

syringae 6; Provisional

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.86  E-value=4.4e-21  Score=190.87  Aligned_cols=215  Identities=20%  Similarity=0.230  Sum_probs=117.2

Q ss_pred             CCCeeEEeecCCCC-CCCCcC-CCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCC-CCCCCCCCcccccccc
Q 037941           37 KDPIAISHPCRDIQ-ELPEKL-ECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFP-SLPSTLGDVATVGVLK  113 (308)
Q Consensus        37 ~~l~~L~l~~~~~~-~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~lp~~~~~~~~l~~l~  113 (308)
                      +++++|++++|.+. .+|..+ .+++|++|++++|.+.+.+|..+ .++++|++|++++|.+. .+|..      +++++
T Consensus       140 ~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~-~~l~~L~~L~L~~n~l~~~~p~~------l~~l~  212 (968)
T PLN00113        140 PNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSL-TNLTSLEFLTLASNQLVGQIPRE------LGQMK  212 (968)
T ss_pred             CCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhh-hhCcCCCeeeccCCCCcCcCChH------HcCcC
Confidence            33444444444442 233333 45555555555555444444443 34555555555555544 34444      55555


Q ss_pred             cccEEeecCCcCc-ccchhhhCcCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCcccccccCCcccchhhhhcCC
Q 037941          114 KLVIFSFRNSHIE-QLPEEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEVEGQNNASLAELNQLS  192 (308)
Q Consensus       114 ~L~~L~l~~~~i~-~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~  192 (308)
                      +|++|++++|.+. .+|..++.+++|++|++++|.....+|.. ++++++|+.|++++|.+.+.       .+..+..++
T Consensus       213 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~~~-------~p~~l~~l~  284 (968)
T PLN00113        213 SLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSS-LGNLKNLQYLFLYQNKLSGP-------IPPSIFSLQ  284 (968)
T ss_pred             CccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChh-HhCCCCCCEEECcCCeeecc-------CchhHhhcc
Confidence            5666666555555 55555566666666666665533344443 55566666666666655422       235667778


Q ss_pred             CCCEEEeeeccCc-cccchhhc-cCCceeEeeccCc----ccccCCCCcCceEEEeecCchhh-hhhHHHHhcccceeec
Q 037941          193 RLTTLEMLILDAQ-VMPRELFS-LGLERNKIFLGDV----WSWTGKYETSRTLKLKLDNRMYL-EHGIKMLLRRTEDLHL  265 (308)
Q Consensus       193 ~L~~L~l~~~~~~-~~p~~~~~-~~L~~l~i~~~~~----~~~~~~~~~L~~L~L~~~~~~~~-~~~~~~~~~~L~~L~l  265 (308)
                      +|+.|++++|.+. .+|..+.. .+|+.|++..+.+    +.+...+++|+.|+|+.|..... +..+.. +++|+.|++
T Consensus       285 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~-~~~L~~L~L  363 (968)
T PLN00113        285 KLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGK-HNNLTVLDL  363 (968)
T ss_pred             CcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhC-CCCCcEEEC
Confidence            8888888888754 45555444 6777777655432    33455667777777776654422 222222 356666666


Q ss_pred             CC
Q 037941          266 DK  267 (308)
Q Consensus       266 ~~  267 (308)
                      ++
T Consensus       364 s~  365 (968)
T PLN00113        364 ST  365 (968)
T ss_pred             CC
Confidence            65

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.84  E-value=1.5e-22  Score=178.67  Aligned_cols=248  Identities=17%  Similarity=0.156  Sum_probs=113.1

Q ss_pred             CCeeEEeecCCCCCCCCcC--CCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCCCCCCcccccccccc
Q 037941           38 DPIAISHPCRDIQELPEKL--ECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKKL  115 (308)
Q Consensus        38 ~l~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~~~~l~~l~~L  115 (308)
                      .+|.|||+.|.+.++|...  .-.+++.|++++|.++. +....|..+.+|-.|.|+.|+++.+|...     |+++++|
T Consensus       150 alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~-l~~~~F~~lnsL~tlkLsrNrittLp~r~-----Fk~L~~L  223 (873)
T KOG4194|consen  150 ALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITT-LETGHFDSLNSLLTLKLSRNRITTLPQRS-----FKRLPKL  223 (873)
T ss_pred             hhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccc-cccccccccchheeeecccCcccccCHHH-----hhhcchh
Confidence            3444444444444443322  33455555555555552 22222345555555555555555555543     5555555


Q ss_pred             cEEeecCCcCccc-chhhhCcCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCcccccccCCc-------------
Q 037941          116 VIFSFRNSHIEQL-PEEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEVEGQN-------------  181 (308)
Q Consensus       116 ~~L~l~~~~i~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-------------  181 (308)
                      +.|++..|.|... ...+..+++|+.|.+..|. +..+..+.|..+.++++|++..|++.....|+.             
T Consensus       224 ~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~-I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~  302 (873)
T KOG4194|consen  224 ESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRND-ISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSY  302 (873)
T ss_pred             hhhhccccceeeehhhhhcCchhhhhhhhhhcC-cccccCcceeeecccceeecccchhhhhhcccccccchhhhhccch
Confidence            5555555555433 2234444444444444444 444444444445555555555554442111100             


Q ss_pred             ----ccchhhhhcCCCCCEEEeeeccCccccchhhc--cCCceeEeeccCcccc----cCCCCcCceEEEeecCch---h
Q 037941          182 ----NASLAELNQLSRLTTLEMLILDAQVMPRELFS--LGLERNKIFLGDVWSW----TGKYETSRTLKLKLDNRM---Y  248 (308)
Q Consensus       182 ----~~~~~~l~~l~~L~~L~l~~~~~~~~p~~~~~--~~L~~l~i~~~~~~~~----~~~~~~L~~L~L~~~~~~---~  248 (308)
                          .-.+......++|+.|+++.|+++++++..+.  ..|+.|.++.+.+...    +..+.+|+.|+|+.|...   .
T Consensus       303 NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IE  382 (873)
T KOG4194|consen  303 NAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIE  382 (873)
T ss_pred             hhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEe
Confidence                00012333444555555555555555544433  4445554444443221    334455555555554321   1


Q ss_pred             hhhhHHHHhcccceeecCCccchhhhhhccCCCCCCcccEEecccc
Q 037941          249 LEHGIKMLLRRTEDLHLDKLNGLQNVLHELDGEGFPRLKHLLVQNA  294 (308)
Q Consensus       249 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c  294 (308)
                      ...+...-+++|+.|.+.+ |+++.++- -..++++.|++|++.++
T Consensus       383 Daa~~f~gl~~LrkL~l~g-Nqlk~I~k-rAfsgl~~LE~LdL~~N  426 (873)
T KOG4194|consen  383 DAAVAFNGLPSLRKLRLTG-NQLKSIPK-RAFSGLEALEHLDLGDN  426 (873)
T ss_pred             cchhhhccchhhhheeecC-ceeeecch-hhhccCcccceecCCCC
Confidence            1111111135556666655 55555433 11355666666666555

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.84  E-value=6.5e-22  Score=174.70  Aligned_cols=239  Identities=19%  Similarity=0.191  Sum_probs=163.9

Q ss_pred             CCCeeEEeecCCCCCCCCcC--CCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCC--------------------
Q 037941           37 KDPIAISHPCRDIQELPEKL--ECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGF--------------------   94 (308)
Q Consensus        37 ~~l~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~--------------------   94 (308)
                      .++.+|+|.+|.++.+....  .+.+|.+|-++.|.++ .+|...|..+++|+.|+|..|                    
T Consensus       173 ~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrit-tLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlk  251 (873)
T KOG4194|consen  173 VNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRIT-TLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLK  251 (873)
T ss_pred             CCceEEeeccccccccccccccccchheeeecccCccc-ccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhh
Confidence            35556666666655444333  4555555555555554 444444444555555555554                    


Q ss_pred             ----CCCCCCCCCCCcccccccccccEEeecCCcCcccc-hhhhCcCCCCEEecCCCCCCCccCcchhcCCCCCceEEcc
Q 037941           95 ----HFPSLPSTLGDVATVGVLKKLVIFSFRNSHIEQLP-EEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMG  169 (308)
Q Consensus        95 ----~~~~lp~~~~~~~~l~~l~~L~~L~l~~~~i~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~  169 (308)
                          .+.++-++.     |..+.++++|++..|.++..- ..+..++.|++|++++|. +.++....+..+++|++|+++
T Consensus       252 lqrN~I~kL~DG~-----Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~Na-I~rih~d~WsftqkL~~LdLs  325 (873)
T KOG4194|consen  252 LQRNDISKLDDGA-----FYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNA-IQRIHIDSWSFTQKLKELDLS  325 (873)
T ss_pred             hhhcCcccccCcc-----eeeecccceeecccchhhhhhcccccccchhhhhccchhh-hheeecchhhhcccceeEecc
Confidence                444444443     666777788888888777554 457788888888888888 666665557778889999999


Q ss_pred             CCcccccccCCcccchhhhhcCCCCCEEEeeeccCccccchhhc--cCCceeEeeccCccc-------ccCCCCcCceEE
Q 037941          170 NSFTHWEVEGQNNASLAELNQLSRLTTLEMLILDAQVMPRELFS--LGLERNKIFLGDVWS-------WTGKYETSRTLK  240 (308)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~~~~--~~L~~l~i~~~~~~~-------~~~~~~~L~~L~  240 (308)
                      .|++....+       ..|.-+..|++|.++.|.++.+.+..+.  .+|+.|++..+++..       .+..++.|+.|.
T Consensus       326 ~N~i~~l~~-------~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~  398 (873)
T KOG4194|consen  326 SNRITRLDE-------GSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLR  398 (873)
T ss_pred             ccccccCCh-------hHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhhee
Confidence            888884443       5777888999999999999999888776  899999987776422       245689999999


Q ss_pred             EeecCchhhhhhHHHHhcccceeecCCccchhhhhhccCCCCCCcccEEecc
Q 037941          241 LKLDNRMYLEHGIKMLLRRTEDLHLDKLNGLQNVLHELDGEGFPRLKHLLVQ  292 (308)
Q Consensus       241 L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~  292 (308)
                      |.+|+..........-+++|+.|++.+ |.+.++-+.. .+.+ +|++|.+.
T Consensus       399 l~gNqlk~I~krAfsgl~~LE~LdL~~-NaiaSIq~nA-Fe~m-~Lk~Lv~n  447 (873)
T KOG4194|consen  399 LTGNQLKSIPKRAFSGLEALEHLDLGD-NAIASIQPNA-FEPM-ELKELVMN  447 (873)
T ss_pred             ecCceeeecchhhhccCcccceecCCC-Ccceeecccc-cccc-hhhhhhhc
Confidence            999987666544444459999999988 6666654322 1333 67777654

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.80  E-value=2.6e-21  Score=172.41  Aligned_cols=249  Identities=18%  Similarity=0.257  Sum_probs=154.4

Q ss_pred             cCCCCeeEEeecCCCCCCCCcC-CCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCCCCCCcccccccc
Q 037941           35 MQKDPIAISHPCRDIQELPEKL-ECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLK  113 (308)
Q Consensus        35 ~~~~l~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~~~~l~~l~  113 (308)
                      .++.++.|+++.|.+.++|... .-++.-+|++++|++. .+|...|-++..|-+|||++|++..+|+.      +..+.
T Consensus       101 ~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe~LPPQ------~RRL~  173 (1255)
T KOG0444|consen  101 RLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLEMLPPQ------IRRLS  173 (1255)
T ss_pred             ccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccchhhhcCHH------HHHHh
Confidence            4778889999999998888888 8889999999999887 78888888899999999999999999998      78888


Q ss_pred             cccEEeecCCcCcccc-hhhhCcCCCCEEecCCCCC-CCccCcchhcCCCCCceEEccCCcccccccCCcccchhhhhcC
Q 037941          114 KLVIFSFRNSHIEQLP-EEIGQLTRLKLLDLSTCSK-LKSIRPNVISNLPRLEELYMGNSFTHWEVEGQNNASLAELNQL  191 (308)
Q Consensus       114 ~L~~L~l~~~~i~~l~-~~~~~l~~L~~L~l~~~~~-~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l  191 (308)
                      +|++|++++|.+.... ..+-.|++|+.|.+++.+. +..+|.. +..+.||+.+|++.|.+.        ..++.+..+
T Consensus       174 ~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Pts-ld~l~NL~dvDlS~N~Lp--------~vPecly~l  244 (1255)
T KOG0444|consen  174 MLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTS-LDDLHNLRDVDLSENNLP--------IVPECLYKL  244 (1255)
T ss_pred             hhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCc-hhhhhhhhhccccccCCC--------cchHHHhhh
Confidence            8888888877544211 1133344444444444321 2234433 444455555555554443        233444444


Q ss_pred             CCCCEEE-----------------------eeeccCccccchhhc-cCCceeEeeccC-----cccccCCCCcCceEEEe
Q 037941          192 SRLTTLE-----------------------MLILDAQVMPRELFS-LGLERNKIFLGD-----VWSWTGKYETSRTLKLK  242 (308)
Q Consensus       192 ~~L~~L~-----------------------l~~~~~~~~p~~~~~-~~L~~l~i~~~~-----~~~~~~~~~~L~~L~L~  242 (308)
                      ++|++|.                       ++.|.++.+|..++. ++|+.|...++.     ++.-++.+..|..+..+
T Consensus       245 ~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aa  324 (1255)
T KOG0444|consen  245 RNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAA  324 (1255)
T ss_pred             hhhheeccCcCceeeeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhh
Confidence            4444444                       444444555555544 445444433222     22333444444444444


Q ss_pred             ecCchhhhhhHHHHhcccceeecCCccchhhhhhccCCCCCCcccEEeccccccccccccC
Q 037941          243 LDNRMYLEHGIKMLLRRTEDLHLDKLNGLQNVLHELDGEGFPRLKHLLVQNASEILYIVSS  303 (308)
Q Consensus       243 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~  303 (308)
                      .|...-.++++..+ +.|+.|.+++ +.+-..+..+  .-++.|+.|++..+|++-.-|-+
T Consensus       325 nN~LElVPEglcRC-~kL~kL~L~~-NrLiTLPeaI--HlL~~l~vLDlreNpnLVMPPKP  381 (1255)
T KOG0444|consen  325 NNKLELVPEGLCRC-VKLQKLKLDH-NRLITLPEAI--HLLPDLKVLDLRENPNLVMPPKP  381 (1255)
T ss_pred             ccccccCchhhhhh-HHHHHhcccc-cceeechhhh--hhcCCcceeeccCCcCccCCCCc
Confidence            44444445565554 7788888865 5544433222  34688899999999888776643

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.78  E-value=6.2e-21  Score=170.04  Aligned_cols=234  Identities=21%  Similarity=0.302  Sum_probs=150.0

Q ss_pred             ccchhhHhhh-hcCCCCeeEEeecCCCCCCCCcC-CCCCccEEEecCCCCc-CCCCchhhcCCCCccEEEccCCCCCCCC
Q 037941           24 ISDLREVFED-LMQKDPIAISHPCRDIQELPEKL-ECPKLKLFFLFSEKLS-LVIPDLFFEGVPSLQVLSLNGFHFPSLP  100 (308)
Q Consensus        24 ~~~~~~~~~~-~~~~~l~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~-~~~~~~~~~~l~~L~~L~l~~~~~~~lp  100 (308)
                      +.++.++|+. ....++.+|++..|.+.++-... .++.||.+.+..|++. ..+|.++| ++..|.+|||+.|.+.+.|
T Consensus        41 rt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF-~l~dLt~lDLShNqL~EvP  119 (1255)
T KOG0444|consen   41 RTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIF-RLKDLTILDLSHNQLREVP  119 (1255)
T ss_pred             hhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhc-ccccceeeecchhhhhhcc
Confidence            5667777755 45678888888888876654444 7888888888887763 46777776 6888888888888888888


Q ss_pred             CCCCCcccccccccccEEeecCCcCcccchh-hhCcCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCccccccc-
Q 037941          101 STLGDVATVGVLKKLVIFSFRNSHIEQLPEE-IGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEVE-  178 (308)
Q Consensus       101 ~~~~~~~~l~~l~~L~~L~l~~~~i~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-  178 (308)
                      .+      +..-+++-.|++++|.|..+|.. +-+++.|-+|++++|. ++.+|++ +..+.+|+.|.+++|.+.-..- 
T Consensus       120 ~~------LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~Nr-Le~LPPQ-~RRL~~LqtL~Ls~NPL~hfQLr  191 (1255)
T KOG0444|consen  120 TN------LEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNR-LEMLPPQ-IRRLSMLQTLKLSNNPLNHFQLR  191 (1255)
T ss_pred             hh------hhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccch-hhhcCHH-HHHHhhhhhhhcCCChhhHHHHh
Confidence            87      77777777888888888888754 4567777888888877 7778877 6777777777777776541100 


Q ss_pred             -----------------CCcccchhhhhcCCCCCEEEeeeccCccccchhhc-cCCceeEeeccCcccc---cCCCCcCc
Q 037941          179 -----------------GQNNASLAELNQLSRLTTLEMLILDAQVMPRELFS-LGLERNKIFLGDVWSW---TGKYETSR  237 (308)
Q Consensus       179 -----------------~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~~~~-~~L~~l~i~~~~~~~~---~~~~~~L~  237 (308)
                                       ......+..+-.+.+|+.++++.|.+..+|..+.. .+|..|+++.+.+...   .+.-.++.
T Consensus       192 QLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lE  271 (1255)
T KOG0444|consen  192 QLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLE  271 (1255)
T ss_pred             cCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhh
Confidence                             00112233344445555555555555555555544 5555555555543331   22334555


Q ss_pred             eEEEeecCchhhhhhHHHHhcccceeecCC
Q 037941          238 TLKLKLDNRMYLEHGIKMLLRRTEDLHLDK  267 (308)
Q Consensus       238 ~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~  267 (308)
                      +|+|+.|+.+..++.+-.+ +.|+.|.+.+
T Consensus       272 tLNlSrNQLt~LP~avcKL-~kL~kLy~n~  300 (1255)
T KOG0444|consen  272 TLNLSRNQLTVLPDAVCKL-TKLTKLYANN  300 (1255)
T ss_pred             hhccccchhccchHHHhhh-HHHHHHHhcc
Confidence            5555555555444444443 5555555544

>PLN03210 Resistant to P

Probab=99.78  E-value=5.2e-18  Score=170.20  Aligned_cols=254  Identities=21%  Similarity=0.262  Sum_probs=173.4

Q ss_pred             hcCCCCeeEEeecCCC-------CCCCCcC-CC-CCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCCCCC
Q 037941           34 LMQKDPIAISHPCRDI-------QELPEKL-EC-PKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLG  104 (308)
Q Consensus        34 ~~~~~l~~L~l~~~~~-------~~~~~~~-~~-~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~  104 (308)
                      ..+.+++.|.+..+..       ..+|..+ .+ .+|+.|.+.++.+. .+|..+  ...+|+.|++.++.+..+|.+  
T Consensus       555 ~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f--~~~~L~~L~L~~s~l~~L~~~--  629 (1153)
T PLN03210        555 KGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF--RPENLVKLQMQGSKLEKLWDG--  629 (1153)
T ss_pred             hcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC--CccCCcEEECcCccccccccc--
Confidence            4588999999976542       2356555 44 47999999998765 667665  578999999999999999998  


Q ss_pred             CcccccccccccEEeecCCc-CcccchhhhCcCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCc-ccccccCCcc
Q 037941          105 DVATVGVLKKLVIFSFRNSH-IEQLPEEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSF-THWEVEGQNN  182 (308)
Q Consensus       105 ~~~~l~~l~~L~~L~l~~~~-i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~  182 (308)
                          +..+++|++|+++++. +..+|. ++.+++|+.|++++|..+..+|.. ++++++|+.|++++|. +...+.+..-
T Consensus       630 ----~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~s-i~~L~~L~~L~L~~c~~L~~Lp~~i~l  703 (1153)
T PLN03210        630 ----VHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSS-IQYLNKLEDLDMSRCENLEILPTGINL  703 (1153)
T ss_pred             ----cccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchh-hhccCCCCEEeCCCCCCcCccCCcCCC
Confidence                8899999999999875 668886 889999999999999888999987 8999999999999874 3322111000


Q ss_pred             -----------cchhhh-hcCCCCCEEEeeeccCccccchhhccCCceeEeeccC---ccc--------ccCCCCcCceE
Q 037941          183 -----------ASLAEL-NQLSRLTTLEMLILDAQVMPRELFSLGLERNKIFLGD---VWS--------WTGKYETSRTL  239 (308)
Q Consensus       183 -----------~~~~~l-~~l~~L~~L~l~~~~~~~~p~~~~~~~L~~l~i~~~~---~~~--------~~~~~~~L~~L  239 (308)
                                 .....+ ....+|+.|+++++.+..+|..+..++|+.|.+....   ++.        .....++|+.|
T Consensus       704 ~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L  783 (1153)
T PLN03210        704 KSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRL  783 (1153)
T ss_pred             CCCCEEeCCCCCCccccccccCCcCeeecCCCccccccccccccccccccccccchhhccccccccchhhhhccccchhe
Confidence                       000000 0112455555555555566655544555555443211   110        01123577788


Q ss_pred             EEeecCchh-hhhhHHHHhcccceeecCCccchhhhhhccCCCCCCcccEEecccccccccccc
Q 037941          240 KLKLDNRMY-LEHGIKMLLRRTEDLHLDKLNGLQNVLHELDGEGFPRLKHLLVQNASEILYIVS  302 (308)
Q Consensus       240 ~L~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~  302 (308)
                      +|+.|.... .+..+.. +++|+.|++.+|+.++.++...   .+++|+.|++++|.+++.+|.
T Consensus       784 ~Ls~n~~l~~lP~si~~-L~~L~~L~Ls~C~~L~~LP~~~---~L~sL~~L~Ls~c~~L~~~p~  843 (1153)
T PLN03210        784 FLSDIPSLVELPSSIQN-LHKLEHLEIENCINLETLPTGI---NLESLESLDLSGCSRLRTFPD  843 (1153)
T ss_pred             eCCCCCCccccChhhhC-CCCCCEEECCCCCCcCeeCCCC---CccccCEEECCCCCccccccc
Confidence            887765433 2344444 4888888888888877654322   577888888888888777664

syringae 6; Provisional

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.76  E-value=1.3e-20  Score=142.62  Aligned_cols=162  Identities=19%  Similarity=0.340  Sum_probs=150.3

Q ss_pred             hcCCCCeeEEeecCCCCCCCCcC-CCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCCCCCCccccccc
Q 037941           34 LMQKDPIAISHPCRDIQELPEKL-ECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVL  112 (308)
Q Consensus        34 ~~~~~l~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~~~~l~~l  112 (308)
                      -..+.+++|.++.|++..+|+.+ .+.+|+.|++.+|+++ ++|..+ +.+++|+.|++..|++..+|.+      |+.+
T Consensus        30 f~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie-~lp~~i-ssl~klr~lnvgmnrl~~lprg------fgs~  101 (264)
T KOG0617|consen   30 FNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIE-ELPTSI-SSLPKLRILNVGMNRLNILPRG------FGSF  101 (264)
T ss_pred             cchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhh-hcChhh-hhchhhhheecchhhhhcCccc------cCCC
Confidence            45788999999999999999988 9999999999999988 778877 7899999999999999999999      9999


Q ss_pred             ccccEEeecCCcCc--ccchhhhCcCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCcccccccCCcccchhhhhc
Q 037941          113 KKLVIFSFRNSHIE--QLPEEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEVEGQNNASLAELNQ  190 (308)
Q Consensus       113 ~~L~~L~l~~~~i~--~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~  190 (308)
                      +.|+.||+++|.+.  .+|..+..|+-|+.|++++|. ++.+|.+ ++++++|+.|.+..|.+.        +.+.+++.
T Consensus       102 p~levldltynnl~e~~lpgnff~m~tlralyl~dnd-fe~lp~d-vg~lt~lqil~lrdndll--------~lpkeig~  171 (264)
T KOG0617|consen  102 PALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDND-FEILPPD-VGKLTNLQILSLRDNDLL--------SLPKEIGD  171 (264)
T ss_pred             chhhhhhccccccccccCCcchhHHHHHHHHHhcCCC-cccCChh-hhhhcceeEEeeccCchh--------hCcHHHHH
Confidence            99999999999987  899999999999999999998 8999998 899999999999999877        56789999


Q ss_pred             CCCCCEEEeeeccCccccchhhc
Q 037941          191 LSRLTTLEMLILDAQVMPRELFS  213 (308)
Q Consensus       191 l~~L~~L~l~~~~~~~~p~~~~~  213 (308)
                      +.+|++|++.+|+++.+|+.+..
T Consensus       172 lt~lrelhiqgnrl~vlppel~~  194 (264)
T KOG0617|consen  172 LTRLRELHIQGNRLTVLPPELAN  194 (264)
T ss_pred             HHHHHHHhcccceeeecChhhhh
Confidence            99999999999999999988665

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.75  E-value=5.7e-20  Score=155.96  Aligned_cols=259  Identities=22%  Similarity=0.257  Sum_probs=160.0

Q ss_pred             ccchhhHhhh-hcCCCCeeEEeecCCCCCCCCcCCCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCCC
Q 037941           24 ISDLREVFED-LMQKDPIAISHPCRDIQELPEKLECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPST  102 (308)
Q Consensus        24 ~~~~~~~~~~-~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~  102 (308)
                      .+.+..+|+. ..++++..|+++.|++..+|+...|..|.+++.+.|++. -+|.+...++.++.+||+.+|++.++|++
T Consensus       192 ~N~L~tlP~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklke~Pde  270 (565)
T KOG0472|consen  192 SNLLETLPPELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLKEVPDE  270 (565)
T ss_pred             hhhhhcCChhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccccCchH
Confidence            3444555544 446666677777777777775557777777777777765 56667766778888888888888888887


Q ss_pred             CCCcccccccccccEEeecCCcCcccchhhhCcCCCCEEecCCCCCCCccCcch--------------------------
Q 037941          103 LGDVATVGVLKKLVIFSFRNSHIEQLPEEIGQLTRLKLLDLSTCSKLKSIRPNV--------------------------  156 (308)
Q Consensus       103 ~~~~~~l~~l~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~--------------------------  156 (308)
                            ++.+.+|.+||+++|.|+.+|..++++ +|+.|.+-+|. +..+..++                          
T Consensus       271 ------~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNP-lrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~  342 (565)
T KOG0472|consen  271 ------ICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNP-LRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEG  342 (565)
T ss_pred             ------HHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCc-hHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcc
Confidence                  777777888888888888888777777 77777776665 22111111                          


Q ss_pred             ---------------hcCCCCCceEEccCCccc--------------------------ccccC----------------
Q 037941          157 ---------------ISNLPRLEELYMGNSFTH--------------------------WEVEG----------------  179 (308)
Q Consensus       157 ---------------~~~l~~L~~L~l~~~~~~--------------------------~~~~~----------------  179 (308)
                                     ...+.+.+.|+++.-.++                          ..+.+                
T Consensus       343 ~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn  422 (565)
T KOG0472|consen  343 GTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNN  422 (565)
T ss_pred             cccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcC
Confidence                           111222333333322222                          11111                


Q ss_pred             CcccchhhhhcCCCCCEEEeeeccCccccchhhc-cCCceeEeeccCcccccCCCCcCceEE---EeecCchhh-hhhHH
Q 037941          180 QNNASLAELNQLSRLTTLEMLILDAQVMPRELFS-LGLERNKIFLGDVWSWTGKYETSRTLK---LKLDNRMYL-EHGIK  254 (308)
Q Consensus       180 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~~~~-~~L~~l~i~~~~~~~~~~~~~~L~~L~---L~~~~~~~~-~~~~~  254 (308)
                      .....+..++.+++|..|+++.|.+.++|..++. ..|+.++++.+.+...+..+..++.+.   .+.|+.... ..++.
T Consensus       423 ~isfv~~~l~~l~kLt~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~  502 (565)
T KOG0472|consen  423 KISFVPLELSQLQKLTFLDLSNNLLNDLPEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLK  502 (565)
T ss_pred             ccccchHHHHhhhcceeeecccchhhhcchhhhhhhhhheecccccccccchHHHhhHHHHHHHHhccccccccChHHhh
Confidence            1112234556666777777777766677766665 556666666665444333333333222   222333222 33455


Q ss_pred             HHhcccceeecCCccchhhhhhccCCCCCCcccEEeccccc
Q 037941          255 MLLRRTEDLHLDKLNGLQNVLHELDGEGFPRLKHLLVQNAS  295 (308)
Q Consensus       255 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~  295 (308)
                      .+ .+|..|++.+ +.++.+++.+  +.|.+|++|++.++|
T Consensus       503 nm-~nL~tLDL~n-Ndlq~IPp~L--gnmtnL~hLeL~gNp  539 (565)
T KOG0472|consen  503 NM-RNLTTLDLQN-NDLQQIPPIL--GNMTNLRHLELDGNP  539 (565)
T ss_pred             hh-hhcceeccCC-CchhhCChhh--ccccceeEEEecCCc
Confidence            54 8899999987 8889888866  889999999999984

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.71  E-value=1.6e-16  Score=150.15  Aligned_cols=233  Identities=18%  Similarity=0.101  Sum_probs=125.0

Q ss_pred             eecccchhhHhhhhcCCCCeeEEeecCCCCCCCCcCCCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCC
Q 037941           21 IQIISDLREVFEDLMQKDPIAISHPCRDIQELPEKLECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLP  100 (308)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp  100 (308)
                      ...+..+..+|+. ...+++.|.+.+|.+..+|..  .++|++|++++|.++ .+|.    ..++|+.|++++|.+..+|
T Consensus       207 dLs~~~LtsLP~~-l~~~L~~L~L~~N~Lt~LP~l--p~~Lk~LdLs~N~Lt-sLP~----lp~sL~~L~Ls~N~L~~Lp  278 (788)
T PRK15387        207 NVGESGLTTLPDC-LPAHITTLVIPDNNLTSLPAL--PPELRTLEVSGNQLT-SLPV----LPPGLLELSIFSNPLTHLP  278 (788)
T ss_pred             EcCCCCCCcCCcc-hhcCCCEEEccCCcCCCCCCC--CCCCcEEEecCCccC-cccC----cccccceeeccCCchhhhh
Confidence            3445677777753 356788899998888887753  578889999888877 4553    2356677777777666555


Q ss_pred             CCCCCcccccccccccEEeecCCcCcccchhhhCcCCCCEEecCCCCCCCccCcchhc-----------------CCCCC
Q 037941          101 STLGDVATVGVLKKLVIFSFRNSHIEQLPEEIGQLTRLKLLDLSTCSKLKSIRPNVIS-----------------NLPRL  163 (308)
Q Consensus       101 ~~~~~~~~l~~l~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~-----------------~l~~L  163 (308)
                      ..         ..+|+.|++++|.++.+|..   .++|+.|++++|. ++.+|.. ..                 -..+|
T Consensus       279 ~l---------p~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~-L~~Lp~l-p~~L~~L~Ls~N~L~~LP~lp~~L  344 (788)
T PRK15387        279 AL---------PSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQ-LASLPAL-PSELCKLWAYNNQLTSLPTLPSGL  344 (788)
T ss_pred             hc---------hhhcCEEECcCCcccccccc---ccccceeECCCCc-cccCCCC-cccccccccccCcccccccccccc
Confidence            43         12344444444444444431   2344444444443 3333321 00                 01355


Q ss_pred             ceEEccCCcccccccCCcccchhhhhcCCCCCEEEeeeccCccccchhhccCCceeEeeccCcccccCCCCcCceEEEee
Q 037941          164 EELYMGNSFTHWEVEGQNNASLAELNQLSRLTTLEMLILDAQVMPRELFSLGLERNKIFLGDVWSWTGKYETSRTLKLKL  243 (308)
Q Consensus       164 ~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~~~~~~L~~l~i~~~~~~~~~~~~~~L~~L~L~~  243 (308)
                      +.|++++|.+...+.           ...+|+.|++++|.+..+|...  .+|+.|++..+.+.......++|+.|+++.
T Consensus       345 q~LdLS~N~Ls~LP~-----------lp~~L~~L~Ls~N~L~~LP~l~--~~L~~LdLs~N~Lt~LP~l~s~L~~LdLS~  411 (788)
T PRK15387        345 QELSVSDNQLASLPT-----------LPSELYKLWAYNNRLTSLPALP--SGLKELIVSGNRLTSLPVLPSELKELMVSG  411 (788)
T ss_pred             ceEecCCCccCCCCC-----------CCcccceehhhccccccCcccc--cccceEEecCCcccCCCCcccCCCEEEccC
Confidence            666666665552211           0123444555555554444321  345555555554444333345566666666


Q ss_pred             cCchhhhhhHHHHhcccceeecCCccchhhhhhccCCCCCCcccEEeccccc
Q 037941          244 DNRMYLEHGIKMLLRRTEDLHLDKLNGLQNVLHELDGEGFPRLKHLLVQNAS  295 (308)
Q Consensus       244 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~  295 (308)
                      |.....+.    .+.+|+.|++++ |.++.++..+  ..+++|+.|++++|+
T Consensus       412 N~LssIP~----l~~~L~~L~Ls~-NqLt~LP~sl--~~L~~L~~LdLs~N~  456 (788)
T PRK15387        412 NRLTSLPM----LPSGLLSLSVYR-NQLTRLPESL--IHLSSETTVNLEGNP  456 (788)
T ss_pred             CcCCCCCc----chhhhhhhhhcc-CcccccChHH--hhccCCCeEECCCCC
Confidence            55433221    224556666665 5555443322  345667777777764

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.71  E-value=7.2e-20  Score=155.36  Aligned_cols=239  Identities=23%  Similarity=0.260  Sum_probs=157.7

Q ss_pred             hcCCCCeeEEeecCCCCCCCCcC-CCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCCCCCCccccccc
Q 037941           34 LMQKDPIAISHPCRDIQELPEKL-ECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVL  112 (308)
Q Consensus        34 ~~~~~l~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~~~~l~~l  112 (308)
                      .....+.++.++.|...++|+.+ .+..+..++.++|.+. .+|..+ ..+.+++.++.++|.+.++|++      ++.+
T Consensus        65 ~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls-~lp~~i-~s~~~l~~l~~s~n~~~el~~~------i~~~  136 (565)
T KOG0472|consen   65 KNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLS-ELPEQI-GSLISLVKLDCSSNELKELPDS------IGRL  136 (565)
T ss_pred             hcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHh-hccHHH-hhhhhhhhhhccccceeecCch------HHHH
Confidence            34455556666666665555555 5556666666665554 455555 3566666666666666666666      6666


Q ss_pred             ccccEEeecCCcCcccchhhhCcCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCcccccccCCcccchhhhhcCC
Q 037941          113 KKLVIFSFRNSHIEQLPEEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEVEGQNNASLAELNQLS  192 (308)
Q Consensus       113 ~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~  192 (308)
                      ..|..++..+|+++.+|++++.+.+|..+++.+|. +..+|+..+. ++.|++++...|.+.        ..+.+++.+.
T Consensus       137 ~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~-l~~l~~~~i~-m~~L~~ld~~~N~L~--------tlP~~lg~l~  206 (565)
T KOG0472|consen  137 LDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNK-LKALPENHIA-MKRLKHLDCNSNLLE--------TLPPELGGLE  206 (565)
T ss_pred             hhhhhhhccccccccCchHHHHHHHHHHhhccccc-hhhCCHHHHH-HHHHHhcccchhhhh--------cCChhhcchh
Confidence            66666666666666666666666666666666666 5566665333 667777777766665        3456777777


Q ss_pred             CCCEEEeeeccCccccchhhccCCceeEeeccCcccc----cCCCCcCceEEEeecCchhhhhhHHHHhcccceeecCCc
Q 037941          193 RLTTLEMLILDAQVMPRELFSLGLERNKIFLGDVWSW----TGKYETSRTLKLKLDNRMYLEHGIKMLLRRTEDLHLDKL  268 (308)
Q Consensus       193 ~L~~L~l~~~~~~~~p~~~~~~~L~~l~i~~~~~~~~----~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~  268 (308)
                      +|..|.+..|++..+|+.-....|+.++...+.+...    ...++.+..|+|..|+....++++--+ .+|++|++++ 
T Consensus       207 ~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clL-rsL~rLDlSN-  284 (565)
T KOG0472|consen  207 SLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLL-RSLERLDLSN-  284 (565)
T ss_pred             hhHHHHhhhcccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchHHHHh-hhhhhhcccC-
Confidence            7777777777777777554446667766655543322    346778888899888887777766554 8899999988 


Q ss_pred             cchhhhhhccCCCCCCcccEEeccccc
Q 037941          269 NGLQNVLHELDGEGFPRLKHLLVQNAS  295 (308)
Q Consensus       269 ~~~~~~~~~~~~~~~~~L~~L~l~~c~  295 (308)
                      +.+...+.++  +.+ .|++|.+.++|
T Consensus       285 N~is~Lp~sL--gnl-hL~~L~leGNP  308 (565)
T KOG0472|consen  285 NDISSLPYSL--GNL-HLKFLALEGNP  308 (565)
T ss_pred             CccccCCccc--ccc-eeeehhhcCCc
Confidence            7777655444  566 88888888885

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.70  E-value=9.7e-17  Score=152.25  Aligned_cols=237  Identities=17%  Similarity=0.203  Sum_probs=135.7

Q ss_pred             ccchhhHhhhhcCCCCeeEEeecCCCCCCCCcCCCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCCCC
Q 037941           24 ISDLREVFEDLMQKDPIAISHPCRDIQELPEKLECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTL  103 (308)
Q Consensus        24 ~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~  103 (308)
                      +.++..+|.. ..+.++.|++++|.+..+|... .++|++|++++|.++ .+|..+.   ..|+.|++++|.+..+|.. 
T Consensus       187 ~~~LtsLP~~-Ip~~L~~L~Ls~N~LtsLP~~l-~~nL~~L~Ls~N~Lt-sLP~~l~---~~L~~L~Ls~N~L~~LP~~-  259 (754)
T PRK15370        187 ILGLTTIPAC-IPEQITTLILDNNELKSLPENL-QGNIKTLYANSNQLT-SIPATLP---DTIQEMELSINRITELPER-  259 (754)
T ss_pred             CCCcCcCCcc-cccCCcEEEecCCCCCcCChhh-ccCCCEEECCCCccc-cCChhhh---ccccEEECcCCccCcCChh-
Confidence            3445555532 3456666666666666665543 246666666666655 4454332   3566666666666666665 


Q ss_pred             CCcccccccccccEEeecCCcCcccchhhhCcCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCcccccccCCccc
Q 037941          104 GDVATVGVLKKLVIFSFRNSHIEQLPEEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEVEGQNNA  183 (308)
Q Consensus       104 ~~~~~l~~l~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~  183 (308)
                           +.  .+|++|++++|.++.+|..+.  .+|+.|++++|. ++.+|.. +  ..+|+.|++++|.+...+      
T Consensus       260 -----l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~-Lt~LP~~-l--p~sL~~L~Ls~N~Lt~LP------  320 (754)
T PRK15370        260 -----LP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDNS-IRTLPAH-L--PSGITHLNVQSNSLTALP------  320 (754)
T ss_pred             -----Hh--CCCCEEECcCCccCccccccC--CCCcEEECCCCc-cccCccc-c--hhhHHHHHhcCCccccCC------
Confidence                 32  356666666666666665442  366666666665 5555543 1  135666666666655221      


Q ss_pred             chhhhhcCCCCCEEEeeeccCccccchhhccCCceeEeeccCcccccCC-CCcCceEEEeecCchhhhhhHHHHhcccce
Q 037941          184 SLAELNQLSRLTTLEMLILDAQVMPRELFSLGLERNKIFLGDVWSWTGK-YETSRTLKLKLDNRMYLEHGIKMLLRRTED  262 (308)
Q Consensus       184 ~~~~l~~l~~L~~L~l~~~~~~~~p~~~~~~~L~~l~i~~~~~~~~~~~-~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~  262 (308)
                        ..+  .++|+.|++++|.++.+|..+. ++|+.|++..+.+....+. .+.|+.|+|+.|.....+..+   .++|+.
T Consensus       321 --~~l--~~sL~~L~Ls~N~Lt~LP~~l~-~sL~~L~Ls~N~L~~LP~~lp~~L~~LdLs~N~Lt~LP~~l---~~sL~~  392 (754)
T PRK15370        321 --ETL--PPGLKTLEAGENALTSLPASLP-PELQVLDVSKNQITVLPETLPPTITTLDVSRNALTNLPENL---PAALQI  392 (754)
T ss_pred             --ccc--cccceeccccCCccccCChhhc-CcccEEECCCCCCCcCChhhcCCcCEEECCCCcCCCCCHhH---HHHHHH
Confidence              111  2467777777777777776543 6777777766654433222 246777777777655444333   245777


Q ss_pred             eecCCccchhhhhhccC--CCCCCcccEEeccccc
Q 037941          263 LHLDKLNGLQNVLHELD--GEGFPRLKHLLVQNAS  295 (308)
Q Consensus       263 L~l~~~~~~~~~~~~~~--~~~~~~L~~L~l~~c~  295 (308)
                      |++++ +.++.++..+.  ...++.+..|.+.+++
T Consensus       393 LdLs~-N~L~~LP~sl~~~~~~~~~l~~L~L~~Np  426 (754)
T PRK15370        393 MQASR-NNLVRLPESLPHFRGEGPQPTRIIVEYNP  426 (754)
T ss_pred             Hhhcc-CCcccCchhHHHHhhcCCCccEEEeeCCC
Confidence            77776 44554332221  1334667777777764

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.68  E-value=2.5e-16  Score=149.49  Aligned_cols=228  Identities=17%  Similarity=0.220  Sum_probs=176.8

Q ss_pred             CCCCeeEEeecCCCCCCCCcCCCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCCCCCCcccccccccc
Q 037941           36 QKDPIAISHPCRDIQELPEKLECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKKL  115 (308)
Q Consensus        36 ~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~~~~l~~l~~L  115 (308)
                      ..+...|++.++++..+|..+ .++++.|++++|.++ .+|..++   .+|++|++++|.+..+|..      +  ..+|
T Consensus       177 ~~~~~~L~L~~~~LtsLP~~I-p~~L~~L~Ls~N~Lt-sLP~~l~---~nL~~L~Ls~N~LtsLP~~------l--~~~L  243 (754)
T PRK15370        177 KNNKTELRLKILGLTTIPACI-PEQITTLILDNNELK-SLPENLQ---GNIKTLYANSNQLTSIPAT------L--PDTI  243 (754)
T ss_pred             ccCceEEEeCCCCcCcCCccc-ccCCcEEEecCCCCC-cCChhhc---cCCCEEECCCCccccCChh------h--hccc
Confidence            456789999999998888755 358999999999988 6777553   5899999999999999987      4  2479


Q ss_pred             cEEeecCCcCcccchhhhCcCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCcccccccCCcccchhhhhcCCCCC
Q 037941          116 VIFSFRNSHIEQLPEEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEVEGQNNASLAELNQLSRLT  195 (308)
Q Consensus       116 ~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~  195 (308)
                      +.|++++|.+..+|..+.  .+|+.|++++|. ++.+|.. +  ..+|+.|++++|.+...+        ..+  .+.|+
T Consensus       244 ~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~N~-L~~LP~~-l--~~sL~~L~Ls~N~Lt~LP--------~~l--p~sL~  307 (754)
T PRK15370        244 QEMELSINRITELPERLP--SALQSLDLFHNK-ISCLPEN-L--PEELRYLSVYDNSIRTLP--------AHL--PSGIT  307 (754)
T ss_pred             cEEECcCCccCcCChhHh--CCCCEEECcCCc-cCccccc-c--CCCCcEEECCCCccccCc--------ccc--hhhHH
Confidence            999999999999998664  589999999988 7788875 3  258999999999988332        222  24688


Q ss_pred             EEEeeeccCccccchhhccCCceeEeeccCcccccCC-CCcCceEEEeecCchhhhhhHHHHhcccceeecCCccchhhh
Q 037941          196 TLEMLILDAQVMPRELFSLGLERNKIFLGDVWSWTGK-YETSRTLKLKLDNRMYLEHGIKMLLRRTEDLHLDKLNGLQNV  274 (308)
Q Consensus       196 ~L~l~~~~~~~~p~~~~~~~L~~l~i~~~~~~~~~~~-~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  274 (308)
                      .|++++|.+..+|..+. .+|+.|.+..+.+...... .++|+.|+++.|.....+..+   .++|++|++++ +.++.+
T Consensus       308 ~L~Ls~N~Lt~LP~~l~-~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~L~~LP~~l---p~~L~~LdLs~-N~Lt~L  382 (754)
T PRK15370        308 HLNVQSNSLTALPETLP-PGLKTLEAGENALTSLPASLPPELQVLDVSKNQITVLPETL---PPTITTLDVSR-NALTNL  382 (754)
T ss_pred             HHHhcCCccccCCcccc-ccceeccccCCccccCChhhcCcccEEECCCCCCCcCChhh---cCCcCEEECCC-CcCCCC
Confidence            99999999998887654 6889988877765444332 358999999998766544333   47899999998 556665


Q ss_pred             hhccCCCCCCcccEEecccccccccccc
Q 037941          275 LHELDGEGFPRLKHLLVQNASEILYIVS  302 (308)
Q Consensus       275 ~~~~~~~~~~~L~~L~l~~c~~l~~i~~  302 (308)
                      +..+.    +.|+.|++++| ++..+|.
T Consensus       383 P~~l~----~sL~~LdLs~N-~L~~LP~  405 (754)
T PRK15370        383 PENLP----AALQIMQASRN-NLVRLPE  405 (754)
T ss_pred             CHhHH----HHHHHHhhccC-CcccCch
Confidence            54332    47999999997 7777764

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.66  E-value=1.4e-15  Score=143.93  Aligned_cols=230  Identities=19%  Similarity=0.160  Sum_probs=162.5

Q ss_pred             CCCeeEEeecCCCCCCCCcCCCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCCCCCCccccccccccc
Q 037941           37 KDPIAISHPCRDIQELPEKLECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKKLV  116 (308)
Q Consensus        37 ~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~~~~l~~l~~L~  116 (308)
                      .+-..|+++.+.+..+|+.+. ++++.|++.+|.++ .+|.    ..++|++|++++|.++.+|..         .++|+
T Consensus       201 ~~~~~LdLs~~~LtsLP~~l~-~~L~~L~L~~N~Lt-~LP~----lp~~Lk~LdLs~N~LtsLP~l---------p~sL~  265 (788)
T PRK15387        201 NGNAVLNVGESGLTTLPDCLP-AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTSLPVL---------PPGLL  265 (788)
T ss_pred             CCCcEEEcCCCCCCcCCcchh-cCCCEEEccCCcCC-CCCC----CCCCCcEEEecCCccCcccCc---------ccccc
Confidence            456689999999999998663 48999999999988 4664    368999999999999999874         36889


Q ss_pred             EEeecCCcCcccchhhhCcCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCcccccccCCc--------ccchhhh
Q 037941          117 IFSFRNSHIEQLPEEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEVEGQN--------NASLAEL  188 (308)
Q Consensus       117 ~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~--------~~~~~~l  188 (308)
                      +|++.+|.++.+|..   .++|+.|++++|. ++.+|..    +++|+.|++++|.+...+....        ...+..+
T Consensus       266 ~L~Ls~N~L~~Lp~l---p~~L~~L~Ls~N~-Lt~LP~~----p~~L~~LdLS~N~L~~Lp~lp~~L~~L~Ls~N~L~~L  337 (788)
T PRK15387        266 ELSIFSNPLTHLPAL---PSGLCKLWIFGNQ-LTSLPVL----PPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSL  337 (788)
T ss_pred             eeeccCCchhhhhhc---hhhcCEEECcCCc-ccccccc----ccccceeECCCCccccCCCCcccccccccccCccccc
Confidence            999999999988863   3678899999998 7888863    4789999999998885322100        0000111


Q ss_pred             hcC-CCCCEEEeeeccCccccchhhccCCceeEeeccCcccccCCCCcCceEEEeecCchhhhhhHHHHhcccceeecCC
Q 037941          189 NQL-SRLTTLEMLILDAQVMPRELFSLGLERNKIFLGDVWSWTGKYETSRTLKLKLDNRMYLEHGIKMLLRRTEDLHLDK  267 (308)
Q Consensus       189 ~~l-~~L~~L~l~~~~~~~~p~~~~~~~L~~l~i~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~  267 (308)
                      ..+ .+|+.|++++|.+..+|..  ..+|+.|.+..+.+........+|+.|+++.|.....+.    .+++|+.|++++
T Consensus       338 P~lp~~Lq~LdLS~N~Ls~LP~l--p~~L~~L~Ls~N~L~~LP~l~~~L~~LdLs~N~Lt~LP~----l~s~L~~LdLS~  411 (788)
T PRK15387        338 PTLPSGLQELSVSDNQLASLPTL--PSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLPV----LPSELKELMVSG  411 (788)
T ss_pred             cccccccceEecCCCccCCCCCC--CcccceehhhccccccCcccccccceEEecCCcccCCCC----cccCCCEEEccC
Confidence            111 2677788888777777653  356666666666554444444578888888776543222    236788888887


Q ss_pred             ccchhhhhhccCCCCCCcccEEecccccccccccc
Q 037941          268 LNGLQNVLHELDGEGFPRLKHLLVQNASEILYIVS  302 (308)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~  302 (308)
                       +.++.++.     ...+|+.|++++| ++..+|+
T Consensus       412 -N~LssIP~-----l~~~L~~L~Ls~N-qLt~LP~  439 (788)
T PRK15387        412 -NRLTSLPM-----LPSGLLSLSVYRN-QLTRLPE  439 (788)
T ss_pred             -CcCCCCCc-----chhhhhhhhhccC-cccccCh
Confidence             55665432     2356788888886 6777775

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.62  E-value=8.7e-18  Score=127.41  Aligned_cols=169  Identities=23%  Similarity=0.345  Sum_probs=146.2

Q ss_pred             CCCCCCcCCCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCCCCCCcccccccccccEEeecCCcCccc
Q 037941           49 IQELPEKLECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKKLVIFSFRNSHIEQL  128 (308)
Q Consensus        49 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~~~~l~~l~~L~~L~l~~~~i~~l  128 (308)
                      +.+++..+++.+.+.|.+++|.++ .+|+.+ ..+.+|++|++.+|.++++|.+      ++.+++|+.|++..|.+..+
T Consensus        23 f~~~~gLf~~s~ITrLtLSHNKl~-~vppni-a~l~nlevln~~nnqie~lp~~------issl~klr~lnvgmnrl~~l   94 (264)
T KOG0617|consen   23 FEELPGLFNMSNITRLTLSHNKLT-VVPPNI-AELKNLEVLNLSNNQIEELPTS------ISSLPKLRILNVGMNRLNIL   94 (264)
T ss_pred             HhhcccccchhhhhhhhcccCcee-ecCCcH-HHhhhhhhhhcccchhhhcChh------hhhchhhhheecchhhhhcC
Confidence            467788889999999999999998 566666 4899999999999999999999      99999999999999999999


Q ss_pred             chhhhCcCCCCEEecCCCCCCC-ccCcchhcCCCCCceEEccCCcccccccCCcccchhhhhcCCCCCEEEeeeccCccc
Q 037941          129 PEEIGQLTRLKLLDLSTCSKLK-SIRPNVISNLPRLEELYMGNSFTHWEVEGQNNASLAELNQLSRLTTLEMLILDAQVM  207 (308)
Q Consensus       129 ~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~  207 (308)
                      |..++.++-|+.|++++|..-+ .+|.. |.-++.|+.|+++.|.+.        -.+...+.+++|+.|.+.+|.+-++
T Consensus        95 prgfgs~p~levldltynnl~e~~lpgn-ff~m~tlralyl~dndfe--------~lp~dvg~lt~lqil~lrdndll~l  165 (264)
T KOG0617|consen   95 PRGFGSFPALEVLDLTYNNLNENSLPGN-FFYMTTLRALYLGDNDFE--------ILPPDVGKLTNLQILSLRDNDLLSL  165 (264)
T ss_pred             ccccCCCchhhhhhccccccccccCCcc-hhHHHHHHHHHhcCCCcc--------cCChhhhhhcceeEEeeccCchhhC
Confidence            9999999999999999987443 46665 677999999999999877        4457889999999999999999999


Q ss_pred             cchhhc-cCCceeEeeccCcccccCCCC
Q 037941          208 PRELFS-LGLERNKIFLGDVWSWTGKYE  234 (308)
Q Consensus       208 p~~~~~-~~L~~l~i~~~~~~~~~~~~~  234 (308)
                      |..+.. ..|+.|.|..+.+....+.+.
T Consensus       166 pkeig~lt~lrelhiqgnrl~vlppel~  193 (264)
T KOG0617|consen  166 PKEIGDLTRLRELHIQGNRLTVLPPELA  193 (264)
T ss_pred             cHHHHHHHHHHHHhcccceeeecChhhh
Confidence            999988 888888888776554444333

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.62  E-value=1.5e-17  Score=141.06  Aligned_cols=264  Identities=20%  Similarity=0.221  Sum_probs=165.9

Q ss_pred             eecccchhhHhhhhcCCCCeeEEeecCCCCCCCCcC--CCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccC-CCCC
Q 037941           21 IQIISDLREVFEDLMQKDPIAISHPCRDIQELPEKL--ECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNG-FHFP   97 (308)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~   97 (308)
                      -|.+.++.++| ...+.....++|..|.+..+|+..  .+++||.|+++.|.++..-|+ .|.++..+..|-+.+ |+|+
T Consensus        52 dCr~~GL~eVP-~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~-AF~GL~~l~~Lvlyg~NkI~  129 (498)
T KOG4237|consen   52 DCRGKGLTEVP-ANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPD-AFKGLASLLSLVLYGNNKIT  129 (498)
T ss_pred             EccCCCcccCc-ccCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChH-hhhhhHhhhHHHhhcCCchh
Confidence            35578899999 445888999999999999998877  999999999999999844444 457899887776655 9999


Q ss_pred             CCCCCCCCcccccccccccEEeecCCcCcccc-hhhhCcCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCccccc
Q 037941           98 SLPSTLGDVATVGVLKKLVIFSFRNSHIEQLP-EEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWE  176 (308)
Q Consensus        98 ~lp~~~~~~~~l~~l~~L~~L~l~~~~i~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~  176 (308)
                      .+|+..     |+.+..|+.|.+.-|++.-++ ..+..+++|.-|.+.+|. +..++.+.+..+..++.+.+..|.+...
T Consensus       130 ~l~k~~-----F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~-~q~i~~~tf~~l~~i~tlhlA~np~icd  203 (498)
T KOG4237|consen  130 DLPKGA-----FGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNK-IQSICKGTFQGLAAIKTLHLAQNPFICD  203 (498)
T ss_pred             hhhhhH-----hhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchh-hhhhccccccchhccchHhhhcCccccc
Confidence            999987     999999999999999988554 668899999999999987 8888887788899999998887764321


Q ss_pred             ccC-----CcccchhhhhcCCCCCEEEeeeccCccccchhhccCCcee--EeeccCcc------cccCCCCcCceEEEee
Q 037941          177 VEG-----QNNASLAELNQLSRLTTLEMLILDAQVMPRELFSLGLERN--KIFLGDVW------SWTGKYETSRTLKLKL  243 (308)
Q Consensus       177 ~~~-----~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~~~~~~L~~l--~i~~~~~~------~~~~~~~~L~~L~L~~  243 (308)
                      ..-     ...-.+.+++.........+...++..++..-+...++.+  .+.....+      ..+..+++|+.|+|+.
T Consensus       204 CnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsn  283 (498)
T KOG4237|consen  204 CNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSN  283 (498)
T ss_pred             cccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCC
Confidence            110     0001122333333333333444444444333332222222  01111111      1244566666666666


Q ss_pred             cCchhhhhhHHHHhcccceeecCCccchhhhhhccCCCCCCcccEEecccc
Q 037941          244 DNRMYLEHGIKMLLRRTEDLHLDKLNGLQNVLHELDGEGFPRLKHLLVQNA  294 (308)
Q Consensus       244 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c  294 (308)
                      |......++...-...+++|.+.+ +.+..+.... ..++..|+.|++.++
T Consensus       284 N~i~~i~~~aFe~~a~l~eL~L~~-N~l~~v~~~~-f~~ls~L~tL~L~~N  332 (498)
T KOG4237|consen  284 NKITRIEDGAFEGAAELQELYLTR-NKLEFVSSGM-FQGLSGLKTLSLYDN  332 (498)
T ss_pred             CccchhhhhhhcchhhhhhhhcCc-chHHHHHHHh-hhccccceeeeecCC
Confidence            655544333333234444554444 4444332221 133444444444444

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.54  E-value=7.6e-16  Score=143.08  Aligned_cols=241  Identities=19%  Similarity=0.234  Sum_probs=127.9

Q ss_pred             CCCCeeEEeecCCCCCCCCcC-CCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCCCCCCccccccccc
Q 037941           36 QKDPIAISHPCRDIQELPEKL-ECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKK  114 (308)
Q Consensus        36 ~~~l~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~~~~l~~l~~  114 (308)
                      ..++++++++.+.+..+|.-+ .|.+|+.+...+|.++ .+|..++ .+.+|++|.+.+|.++.+|+.      ...++.
T Consensus       240 p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~-~~~~L~~l~~~~nel~yip~~------le~~~s  311 (1081)
T KOG0618|consen  240 PLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLV-ALPLRIS-RITSLVSLSAAYNELEYIPPF------LEGLKS  311 (1081)
T ss_pred             cccceeeecchhhhhcchHHHHhcccceEecccchhHH-hhHHHHh-hhhhHHHHHhhhhhhhhCCCc------ccccce
Confidence            344555555555555555322 5555555555555553 4444442 455555555555555555554      444555


Q ss_pred             ccEEeecCCcCcccchhhhCc-C-CCCEEecCCCCCCCccCcchhcCCCCCceEEccCCcccccccCCcccchhhhhcCC
Q 037941          115 LVIFSFRNSHIEQLPEEIGQL-T-RLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEVEGQNNASLAELNQLS  192 (308)
Q Consensus       115 L~~L~l~~~~i~~l~~~~~~l-~-~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~  192 (308)
                      |+.|++..|.+.++|..+..- . +|..++.+.+. +...|.---...+.|+.|.+.+|.+.+       .....+.+++
T Consensus       312 L~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~-l~~lp~~~e~~~~~Lq~LylanN~Ltd-------~c~p~l~~~~  383 (1081)
T KOG0618|consen  312 LRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNK-LSTLPSYEENNHAALQELYLANNHLTD-------SCFPVLVNFK  383 (1081)
T ss_pred             eeeeeehhccccccchHHHhhhhHHHHHHhhhhcc-ccccccccchhhHHHHHHHHhcCcccc-------cchhhhcccc
Confidence            555555555555555432221 1 23444444433 333332101123445555555555552       2235667788


Q ss_pred             CCCEEEeeeccCccccchhhc--cCCceeEeeccCcccc---cCCCCcCceEEEeecCchhhhhhHHHHhcccceeecCC
Q 037941          193 RLTTLEMLILDAQVMPRELFS--LGLERNKIFLGDVWSW---TGKYETSRTLKLKLDNRMYLEHGIKMLLRRTEDLHLDK  267 (308)
Q Consensus       193 ~L~~L~l~~~~~~~~p~~~~~--~~L~~l~i~~~~~~~~---~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~  267 (308)
                      +|+.|++++|++.+||.....  +.|+.|+++.+.+...   ...++.|++|..-.|.....+ .+..+ +.|+.++++.
T Consensus       384 hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fP-e~~~l-~qL~~lDlS~  461 (1081)
T KOG0618|consen  384 HLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFP-ELAQL-PQLKVLDLSC  461 (1081)
T ss_pred             ceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeech-hhhhc-CcceEEeccc
Confidence            888888888888888877654  7777777776664433   344555555555444444333 33333 6777777764


Q ss_pred             ccchhhhhhccCCCCCCcccEEecccccc
Q 037941          268 LNGLQNVLHELDGEGFPRLKHLLVQNASE  296 (308)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~L~~L~l~~c~~  296 (308)
                       |.++.+..... ..-|+|++|+++++..
T Consensus       462 -N~L~~~~l~~~-~p~p~LkyLdlSGN~~  488 (1081)
T KOG0618|consen  462 -NNLSEVTLPEA-LPSPNLKYLDLSGNTR  488 (1081)
T ss_pred             -chhhhhhhhhh-CCCcccceeeccCCcc
Confidence             66665443221 1125777777777653

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.51  E-value=2e-15  Score=140.36  Aligned_cols=244  Identities=18%  Similarity=0.228  Sum_probs=177.7

Q ss_pred             CCCCeeEEeecCCCCCCCCcC-CCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCCCCCCccccccccc
Q 037941           36 QKDPIAISHPCRDIQELPEKL-ECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKK  114 (308)
Q Consensus        36 ~~~l~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~~~~l~~l~~  114 (308)
                      .-++.+|++++|.+.++|..+ .+.+|+.|+++.|.+. .+|... .++.+|+++.|.+|.+..+|.+      +..+++
T Consensus        44 ~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~-~vp~s~-~~~~~l~~lnL~~n~l~~lP~~------~~~lkn  115 (1081)
T KOG0618|consen   44 RVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIR-SVPSSC-SNMRNLQYLNLKNNRLQSLPAS------ISELKN  115 (1081)
T ss_pred             eeeeEEeeccccccccCCchhhhHHHHhhcccchhhHh-hCchhh-hhhhcchhheeccchhhcCchh------HHhhhc
Confidence            345899999999999999988 9999999999999886 566554 7899999999999999999999      999999


Q ss_pred             ccEEeecCCcCcccchhhhCcCCCCEEecCCCCCCCccCcc---------------hhcCCCCCce-EEccCCccccccc
Q 037941          115 LVIFSFRNSHIEQLPEEIGQLTRLKLLDLSTCSKLKSIRPN---------------VISNLPRLEE-LYMGNSFTHWEVE  178 (308)
Q Consensus       115 L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~---------------~~~~l~~L~~-L~l~~~~~~~~~~  178 (308)
                      |++|++++|++..+|..+..++.++.+..++|..+..++..               +.....++++ |++..|++.    
T Consensus       116 l~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~~ldLr~N~~~----  191 (1081)
T KOG0618|consen  116 LQYLDLSFNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTHQLDLRYNEME----  191 (1081)
T ss_pred             ccccccchhccCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhheeeecccchhh----
Confidence            99999999999999988887777777777766333333221               1112233444 777777655    


Q ss_pred             CCcccchhhhhcCCCCCEEE--------------------eeeccCccccchhhccCCceeEeeccC---cccccCCCCc
Q 037941          179 GQNNASLAELNQLSRLTTLE--------------------MLILDAQVMPRELFSLGLERNKIFLGD---VWSWTGKYET  235 (308)
Q Consensus       179 ~~~~~~~~~l~~l~~L~~L~--------------------l~~~~~~~~p~~~~~~~L~~l~i~~~~---~~~~~~~~~~  235 (308)
                            ...+..+.+|+.+.                    .+.|.++..-......+|+.++++.+.   ++.|.+.+.+
T Consensus       192 ------~~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp~wi~~~~n  265 (1081)
T KOG0618|consen  192 ------VLDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLPEWIGACAN  265 (1081)
T ss_pred             ------hhhhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeecchhhhhcchHHHHhccc
Confidence                  12233333333333                    333333322223233777888776554   5678888999


Q ss_pred             CceEEEeecCchhhhhhHHHHhcccceeecCCccchhhhhhccCCCCCCcccEEecccccccccccc
Q 037941          236 SRTLKLKLDNRMYLEHGIKMLLRRTEDLHLDKLNGLQNVLHELDGEGFPRLKHLLVQNASEILYIVS  302 (308)
Q Consensus       236 L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~  302 (308)
                      |..+....|........+... .+|++|.+.. +.++.+++.  .+++.+|+.|++..+ +|...|+
T Consensus       266 le~l~~n~N~l~~lp~ri~~~-~~L~~l~~~~-nel~yip~~--le~~~sL~tLdL~~N-~L~~lp~  327 (1081)
T KOG0618|consen  266 LEALNANHNRLVALPLRISRI-TSLVSLSAAY-NELEYIPPF--LEGLKSLRTLDLQSN-NLPSLPD  327 (1081)
T ss_pred             ceEecccchhHHhhHHHHhhh-hhHHHHHhhh-hhhhhCCCc--ccccceeeeeeehhc-cccccch
Confidence            999998888877777777776 8888888877 777776653  367889999999887 7777775

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.40  E-value=4.7e-15  Score=126.05  Aligned_cols=121  Identities=18%  Similarity=0.226  Sum_probs=103.1

Q ss_pred             eecccchhhHhhh--hcCCCCeeEEeecCCCCCCCCcC--CCCCccEEEecC-CCCcCCCCchhhcCCCCccEEEccCCC
Q 037941           21 IQIISDLREVFED--LMQKDPIAISHPCRDIQELPEKL--ECPKLKLFFLFS-EKLSLVIPDLFFEGVPSLQVLSLNGFH   95 (308)
Q Consensus        21 ~~~~~~~~~~~~~--~~~~~l~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~-~~~~~~~~~~~~~~l~~L~~L~l~~~~   95 (308)
                      ..+.++++.+|+.  +...+||+|+|+.|.+..+.+..  .++.+.+|.+.+ |.++ .+|...|.++..++-|.+.-|.
T Consensus        73 rLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~gL~slqrLllNan~  151 (498)
T KOG4237|consen   73 RLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLPKGAFGGLSSLQRLLLNANH  151 (498)
T ss_pred             EeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhhhhHhhhHHHHHHHhcChhh
Confidence            3456788888866  57889999999999998875544  999999999888 6666 8888888999999999999999


Q ss_pred             CCCCCCCCCCcccccccccccEEeecCCcCcccch-hhhCcCCCCEEecCCCC
Q 037941           96 FPSLPSTLGDVATVGVLKKLVIFSFRNSHIEQLPE-EIGQLTRLKLLDLSTCS  147 (308)
Q Consensus        96 ~~~lp~~~~~~~~l~~l~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~l~~~~  147 (308)
                      +.-++...     +..+++|+.|.+..|.+..+++ .+..+..++++.+..|.
T Consensus       152 i~Cir~~a-----l~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np  199 (498)
T KOG4237|consen  152 INCIRQDA-----LRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNP  199 (498)
T ss_pred             hcchhHHH-----HHHhhhcchhcccchhhhhhccccccchhccchHhhhcCc
Confidence            98777665     8999999999999999999987 68888899988887665

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.37  E-value=7.3e-13  Score=115.64  Aligned_cols=245  Identities=16%  Similarity=0.033  Sum_probs=146.5

Q ss_pred             CCCCeeEEeecCCCC-----CCCCcC-CCCCccEEEecCCCCcC------CCCchhhcCCCCccEEEccCCCCCC-CCCC
Q 037941           36 QKDPIAISHPCRDIQ-----ELPEKL-ECPKLKLFFLFSEKLSL------VIPDLFFEGVPSLQVLSLNGFHFPS-LPST  102 (308)
Q Consensus        36 ~~~l~~L~l~~~~~~-----~~~~~~-~~~~L~~L~l~~~~~~~------~~~~~~~~~l~~L~~L~l~~~~~~~-lp~~  102 (308)
                      ...++.+++.++.+.     .++... ..++++.+++.++.+.+      .++ ..+..+++|+.|++++|.+.. .+..
T Consensus        22 l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~  100 (319)
T cd00116          22 LLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLL-QGLTKGCGLQELDLSDNALGPDGCGV  100 (319)
T ss_pred             HhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHH-HHHHhcCceeEEEccCCCCChhHHHH
Confidence            455889999988872     244444 67788999988877652      111 234568899999999888873 3333


Q ss_pred             CCCccccccccc---ccEEeecCCcCc-----ccchhhhCc-CCCCEEecCCCCCCC-----ccCcchhcCCCCCceEEc
Q 037941          103 LGDVATVGVLKK---LVIFSFRNSHIE-----QLPEEIGQL-TRLKLLDLSTCSKLK-----SIRPNVISNLPRLEELYM  168 (308)
Q Consensus       103 ~~~~~~l~~l~~---L~~L~l~~~~i~-----~l~~~~~~l-~~L~~L~l~~~~~~~-----~~~~~~~~~l~~L~~L~l  168 (308)
                            +..+.+   |++|++++|.+.     .+...+..+ ++|+.|++++|. ++     .++.. +..+++|++|++
T Consensus       101 ------~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~~~~~-~~~~~~L~~L~l  172 (319)
T cd00116         101 ------LESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNR-LEGASCEALAKA-LRANRDLKELNL  172 (319)
T ss_pred             ------HHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCc-CCchHHHHHHHH-HHhCCCcCEEEC
Confidence                  444444   999999988876     233445666 888999999987 44     22222 566778999999


Q ss_pred             cCCcccccccCCcccchhhhhcCCCCCEEEeeeccCcccc-----chhhc-cCCceeEeeccCcccc-----cC----CC
Q 037941          169 GNSFTHWEVEGQNNASLAELNQLSRLTTLEMLILDAQVMP-----RELFS-LGLERNKIFLGDVWSW-----TG----KY  233 (308)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p-----~~~~~-~~L~~l~i~~~~~~~~-----~~----~~  233 (308)
                      ++|.+.+..   .......+..+++|+.|++++|.++...     ..+.. ++|+.|++..+.+.+.     ..    ..
T Consensus       173 ~~n~l~~~~---~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~  249 (319)
T cd00116         173 ANNGIGDAG---IRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPN  249 (319)
T ss_pred             cCCCCchHH---HHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccC
Confidence            988877311   1122345566678999999888764322     22111 5677777766554321     11    13


Q ss_pred             CcCceEEEeecCchhh-----hhhHHHHhcccceeecCCccchhhhhhccC---CCCC-CcccEEecccc
Q 037941          234 ETSRTLKLKLDNRMYL-----EHGIKMLLRRTEDLHLDKLNGLQNVLHELD---GEGF-PRLKHLLVQNA  294 (308)
Q Consensus       234 ~~L~~L~L~~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~---~~~~-~~L~~L~l~~c  294 (308)
                      +.|+.|+++.|.....     ...+.. +++|++++++++ .+...+....   ...+ +.|+.|++.+.
T Consensus       250 ~~L~~L~l~~n~i~~~~~~~l~~~~~~-~~~L~~l~l~~N-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (319)
T cd00116         250 ISLLTLSLSCNDITDDGAKDLAEVLAE-KESLLELDLRGN-KFGEEGAQLLAESLLEPGNELESLWVKDD  317 (319)
T ss_pred             CCceEEEccCCCCCcHHHHHHHHHHhc-CCCccEEECCCC-CCcHHHHHHHHHHHhhcCCchhhcccCCC
Confidence            5777777777654311     112222 256777777763 3332211000   1223 56666666654

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.37  E-value=8.6e-13  Score=115.20  Aligned_cols=246  Identities=17%  Similarity=0.096  Sum_probs=139.7

Q ss_pred             EEeecCCC--CCCCCcC-CCCCccEEEecCCCCcCC----CCchhhcCCCCccEEEccCCCCCCCCCCCCCc-ccccccc
Q 037941           42 ISHPCRDI--QELPEKL-ECPKLKLFFLFSEKLSLV----IPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDV-ATVGVLK  113 (308)
Q Consensus        42 L~l~~~~~--~~~~~~~-~~~~L~~L~l~~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~~-~~l~~l~  113 (308)
                      |+|.++.+  ..+...+ .+.+++.+.+.++.++..    ++. .+...+.++.++++++.+...+..+..+ ..+..++
T Consensus         3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~-~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~   81 (319)
T cd00116           3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALAS-ALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC   81 (319)
T ss_pred             cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHH-HHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence            45555555  2333333 566688888888876432    222 2345667888888877665322221000 1155677


Q ss_pred             cccEEeecCCcCc-ccchhhhCcCC---CCEEecCCCCCCCc-----cCcchhcCC-CCCceEEccCCcccccccCCccc
Q 037941          114 KLVIFSFRNSHIE-QLPEEIGQLTR---LKLLDLSTCSKLKS-----IRPNVISNL-PRLEELYMGNSFTHWEVEGQNNA  183 (308)
Q Consensus       114 ~L~~L~l~~~~i~-~l~~~~~~l~~---L~~L~l~~~~~~~~-----~~~~~~~~l-~~L~~L~l~~~~~~~~~~~~~~~  183 (308)
                      +|++|++++|.+. ..+..+..+.+   |+.|++++|. +..     +... +..+ ++|+.|++++|.+.+..   ...
T Consensus        82 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~-~~~~~~~~l~~~-l~~~~~~L~~L~L~~n~l~~~~---~~~  156 (319)
T cd00116          82 GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNG-LGDRGLRLLAKG-LKDLPPALEKLVLGRNRLEGAS---CEA  156 (319)
T ss_pred             ceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCc-cchHHHHHHHHH-HHhCCCCceEEEcCCCcCCchH---HHH
Confidence            8888888888776 44444544444   8888888876 431     1112 4455 78888888888777321   112


Q ss_pred             chhhhhcCCCCCEEEeeeccCcc-----ccchhhc-cCCceeEeeccCcc--------cccCCCCcCceEEEeecCchhh
Q 037941          184 SLAELNQLSRLTTLEMLILDAQV-----MPRELFS-LGLERNKIFLGDVW--------SWTGKYETSRTLKLKLDNRMYL  249 (308)
Q Consensus       184 ~~~~l~~l~~L~~L~l~~~~~~~-----~p~~~~~-~~L~~l~i~~~~~~--------~~~~~~~~L~~L~L~~~~~~~~  249 (308)
                      ....+..+++|++|++++|.++.     ++..+.. ++|+.|++..+.+.        .....+++|+.|+++.|.....
T Consensus       157 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~  236 (319)
T cd00116         157 LAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDA  236 (319)
T ss_pred             HHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchH
Confidence            33456677788888888877652     2222211 57788777655432        2345667788888887654321


Q ss_pred             -hhhHHHH----hcccceeecCCccchhhhhhc-c--CCCCCCcccEEecccc
Q 037941          250 -EHGIKML----LRRTEDLHLDKLNGLQNVLHE-L--DGEGFPRLKHLLVQNA  294 (308)
Q Consensus       250 -~~~~~~~----~~~L~~L~l~~~~~~~~~~~~-~--~~~~~~~L~~L~l~~c  294 (308)
                       ...+...    .+.|++|++.+|. +++.... +  ....+++|+.+++++|
T Consensus       237 ~~~~l~~~~~~~~~~L~~L~l~~n~-i~~~~~~~l~~~~~~~~~L~~l~l~~N  288 (319)
T cd00116         237 GAAALASALLSPNISLLTLSLSCND-ITDDGAKDLAEVLAEKESLLELDLRGN  288 (319)
T ss_pred             HHHHHHHHHhccCCCceEEEccCCC-CCcHHHHHHHHHHhcCCCccEEECCCC
Confidence             1122221    2578888888753 3211110 0  1133477888888776

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.29  E-value=5.6e-12  Score=98.92  Aligned_cols=140  Identities=21%  Similarity=0.271  Sum_probs=44.1

Q ss_pred             CCCCCCCCcCCCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCCCCCCcccccccccccEEeecCCcCc
Q 037941           47 RDIQELPEKLECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKKLVIFSFRNSHIE  126 (308)
Q Consensus        47 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~~~~l~~l~~L~~L~l~~~~i~  126 (308)
                      +.+...+...++.++++|++.+|.++. +.. +-..+.+|++|++++|.+..++.       +..+++|++|++++|.|+
T Consensus         7 ~~i~~~~~~~n~~~~~~L~L~~n~I~~-Ie~-L~~~l~~L~~L~Ls~N~I~~l~~-------l~~L~~L~~L~L~~N~I~   77 (175)
T PF14580_consen    7 NMIEQIAQYNNPVKLRELNLRGNQIST-IEN-LGATLDKLEVLDLSNNQITKLEG-------LPGLPRLKTLDLSNNRIS   77 (175)
T ss_dssp             ------------------------------S---TT-TT--EEE-TTS--S--TT-----------TT--EEE--SS---
T ss_pred             ccccccccccccccccccccccccccc-ccc-hhhhhcCCCEEECCCCCCccccC-------ccChhhhhhcccCCCCCC
Confidence            334444444456667777777777652 222 11246777777777777777664       667777888888888877


Q ss_pred             ccchhh-hCcCCCCEEecCCCCCCCccCc-chhcCCCCCceEEccCCcccccccCCcccchhhhhcCCCCCEEEee
Q 037941          127 QLPEEI-GQLTRLKLLDLSTCSKLKSIRP-NVISNLPRLEELYMGNSFTHWEVEGQNNASLAELNQLSRLTTLEML  200 (308)
Q Consensus       127 ~l~~~~-~~l~~L~~L~l~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~  200 (308)
                      +++..+ ..+++|+.|++++|. +..+.. ..+..+++|++|++.+|++.....    =-..-+..+|+|+.||-.
T Consensus        78 ~i~~~l~~~lp~L~~L~L~~N~-I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~----YR~~vi~~lP~Lk~LD~~  148 (175)
T PF14580_consen   78 SISEGLDKNLPNLQELYLSNNK-ISDLNELEPLSSLPKLRVLSLEGNPVCEKKN----YRLFVIYKLPSLKVLDGQ  148 (175)
T ss_dssp             S-CHHHHHH-TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-GGGGSTT----HHHHHHHH-TT-SEETTE
T ss_pred             ccccchHHhCCcCCEEECcCCc-CCChHHhHHHHcCCCcceeeccCCcccchhh----HHHHHHHHcChhheeCCE
Confidence            776544 357778888887776 444332 225567777777777777652210    011344566777777644

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.28  E-value=8.9e-12  Score=120.58  Aligned_cols=271  Identities=18%  Similarity=0.175  Sum_probs=171.0

Q ss_pred             ccchhhHhhhhcCCCCeeEEeecCC--CCCCCCcC--CCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCC
Q 037941           24 ISDLREVFEDLMQKDPIAISHPCRD--IQELPEKL--ECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSL   99 (308)
Q Consensus        24 ~~~~~~~~~~~~~~~l~~L~l~~~~--~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l   99 (308)
                      +..+..++.....++++.|-+..|.  +..++..+  .++.|++|++++|.-.+.+|..+ +.+-+||+|+++++.+..+
T Consensus       532 ~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I-~~Li~LryL~L~~t~I~~L  610 (889)
T KOG4658|consen  532 NNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSI-GELVHLRYLDLSDTGISHL  610 (889)
T ss_pred             ccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHH-hhhhhhhcccccCCCcccc
Confidence            4555555655556689999999986  66666643  89999999999988777899988 7899999999999999999


Q ss_pred             CCCCCCcccccccccccEEeecCCcC-cccchhhhCcCCCCEEecCCCC-CCCccCcchhcCCCCCceEEccCCcc---c
Q 037941          100 PSTLGDVATVGVLKKLVIFSFRNSHI-EQLPEEIGQLTRLKLLDLSTCS-KLKSIRPNVISNLPRLEELYMGNSFT---H  174 (308)
Q Consensus       100 p~~~~~~~~l~~l~~L~~L~l~~~~i-~~l~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~~l~~L~~L~l~~~~~---~  174 (308)
                      |.+      ++++++|.||++..+.- ..+|.....|++|++|.+.... ..+..-...+.++.+|+.+.......   .
T Consensus       611 P~~------l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e  684 (889)
T KOG4658|consen  611 PSG------LGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSVLLLE  684 (889)
T ss_pred             chH------HHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchhHhHh
Confidence            999      99999999999998874 4666767779999999987653 11111111134444444444432221   0


Q ss_pred             cc-------------c-c-CCcccchhhhhcCCCCCEEEeeeccCccccchhh--------ccCCceeEeec---cCccc
Q 037941          175 WE-------------V-E-GQNNASLAELNQLSRLTTLEMLILDAQVMPRELF--------SLGLERNKIFL---GDVWS  228 (308)
Q Consensus       175 ~~-------------~-~-~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~~~--------~~~L~~l~i~~---~~~~~  228 (308)
                      ..             . . ......+..+..+.+|+.|.+.++.+.+......        ++++..+.+..   .....
T Consensus       685 ~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~  764 (889)
T KOG4658|consen  685 DLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLT  764 (889)
T ss_pred             hhhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccc
Confidence            00             0 0 0112233556778889999999887654322110        12233322222   23344


Q ss_pred             ccCCCCcCceEEEeecCchhhhhhHHHH----------hccccee-ecCCccchhhhhhccCCCCCCcccEEeccccccc
Q 037941          229 WTGKYETSRTLKLKLDNRMYLEHGIKML----------LRRTEDL-HLDKLNGLQNVLHELDGEGFPRLKHLLVQNASEI  297 (308)
Q Consensus       229 ~~~~~~~L~~L~L~~~~~~~~~~~~~~~----------~~~L~~L-~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l  297 (308)
                      |.--.++|+.|.+..+.....+.+...-          |.++..+ .+.+..+++.+-+  ..-.+++|+.+.+..||++
T Consensus       765 ~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~--~~l~~~~l~~~~ve~~p~l  842 (889)
T KOG4658|consen  765 WLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLRMLCSLGGLPQLYW--LPLSFLKLEELIVEECPKL  842 (889)
T ss_pred             hhhccCcccEEEEecccccccCCCHHHHhhhcccEEecccccccceeeecCCCCceeEe--cccCccchhheehhcCccc
Confidence            5556788999998876544432222211          2444444 2444444444322  1233566788888888888


Q ss_pred             cccccC
Q 037941          298 LYIVSS  303 (308)
Q Consensus       298 ~~i~~~  303 (308)
                      ..+|-.
T Consensus       843 ~~~P~~  848 (889)
T KOG4658|consen  843 GKLPLL  848 (889)
T ss_pred             ccCccc
Confidence            877743

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.23  E-value=1.1e-11  Score=97.22  Aligned_cols=112  Identities=30%  Similarity=0.404  Sum_probs=46.4

Q ss_pred             CCCCccEEEccCCCCCCCCCCCCCccccc-ccccccEEeecCCcCcccchhhhCcCCCCEEecCCCCCCCccCcchhcCC
Q 037941           82 GVPSLQVLSLNGFHFPSLPSTLGDVATVG-VLKKLVIFSFRNSHIEQLPEEIGQLTRLKLLDLSTCSKLKSIRPNVISNL  160 (308)
Q Consensus        82 ~l~~L~~L~l~~~~~~~lp~~~~~~~~l~-~l~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l  160 (308)
                      +..+++.|+|.+|.++.+..       ++ .+.+|+.|++++|.|+.++. +..+++|+.|++++|. ++.++.+....+
T Consensus        17 n~~~~~~L~L~~n~I~~Ie~-------L~~~l~~L~~L~Ls~N~I~~l~~-l~~L~~L~~L~L~~N~-I~~i~~~l~~~l   87 (175)
T PF14580_consen   17 NPVKLRELNLRGNQISTIEN-------LGATLDKLEVLDLSNNQITKLEG-LPGLPRLKTLDLSNNR-ISSISEGLDKNL   87 (175)
T ss_dssp             -------------------S---------TT-TT--EEE-TTS--S--TT-----TT--EEE--SS----S-CHHHHHH-
T ss_pred             cccccccccccccccccccc-------hhhhhcCCCEEECCCCCCccccC-ccChhhhhhcccCCCC-CCccccchHHhC
Confidence            55678999999999998754       55 58899999999999998876 8889999999999999 778876533568


Q ss_pred             CCCceEEccCCcccccccCCcccchhhhhcCCCCCEEEeeeccCcccc
Q 037941          161 PRLEELYMGNSFTHWEVEGQNNASLAELNQLSRLTTLEMLILDAQVMP  208 (308)
Q Consensus       161 ~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p  208 (308)
                      ++|++|++++|.+....      ....+..+++|+.|++.+|.+..-+
T Consensus        88 p~L~~L~L~~N~I~~l~------~l~~L~~l~~L~~L~L~~NPv~~~~  129 (175)
T PF14580_consen   88 PNLQELYLSNNKISDLN------ELEPLSSLPKLRVLSLEGNPVCEKK  129 (175)
T ss_dssp             TT--EEE-TTS---SCC------CCGGGGG-TT--EEE-TT-GGGGST
T ss_pred             CcCCEEECcCCcCCChH------HhHHHHcCCCcceeeccCCcccchh
Confidence            99999999999988332      2567889999999999999876544

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.22  E-value=4.1e-12  Score=109.65  Aligned_cols=186  Identities=16%  Similarity=0.075  Sum_probs=135.1

Q ss_pred             hhcCCCCeeEEeecCCCCCCCC--cC-CCCCccEEEecCCCCcC-CCCchhhcCCCCccEEEccCCCCCCCCCCCCCccc
Q 037941           33 DLMQKDPIAISHPCRDIQELPE--KL-ECPKLKLFFLFSEKLSL-VIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVAT  108 (308)
Q Consensus        33 ~~~~~~l~~L~l~~~~~~~~~~--~~-~~~~L~~L~l~~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~~~~  108 (308)
                      ....++||.+.+.++.+...+.  .. .|++++.|++++|-+.. ...-.++..+++|+.|.++.|.+.....+.    .
T Consensus       117 Qsn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~----~  192 (505)
T KOG3207|consen  117 QSNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSN----T  192 (505)
T ss_pred             hhhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCcccc----c
Confidence            3578899999999999977664  34 99999999999987652 223355678999999999999887433321    0


Q ss_pred             ccccccccEEeecCCcCc--ccchhhhCcCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCcccccccCCcccchh
Q 037941          109 VGVLKKLVIFSFRNSHIE--QLPEEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEVEGQNNASLA  186 (308)
Q Consensus       109 l~~l~~L~~L~l~~~~i~--~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~  186 (308)
                      -..+++|+.|.++.|+++  ++....-.+++|+.|++.+|..+...... ...+..|+.|++++|.+.+...      .-
T Consensus       193 ~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~-~~i~~~L~~LdLs~N~li~~~~------~~  265 (505)
T KOG3207|consen  193 TLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATS-TKILQTLQELDLSNNNLIDFDQ------GY  265 (505)
T ss_pred             hhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecch-hhhhhHHhhccccCCccccccc------cc
Confidence            235789999999999988  66777778999999999999423222222 4567899999999998874433      23


Q ss_pred             hhhcCCCCCEEEeeeccCcccc--ch------hhccCCceeEeeccCcccc
Q 037941          187 ELNQLSRLTTLEMLILDAQVMP--RE------LFSLGLERNKIFLGDVWSW  229 (308)
Q Consensus       187 ~l~~l~~L~~L~l~~~~~~~~p--~~------~~~~~L~~l~i~~~~~~~~  229 (308)
                      ..+.++.|+.|.++.+++.++-  +.      ..+++|+.|.+..+.+.+|
T Consensus       266 ~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w  316 (505)
T KOG3207|consen  266 KVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDW  316 (505)
T ss_pred             ccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccc
Confidence            5567899999999998865532  21      2236666666666665444

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.13  E-value=2.3e-12  Score=114.63  Aligned_cols=185  Identities=22%  Similarity=0.275  Sum_probs=106.2

Q ss_pred             EEeecCCCCCCCCcC---CCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCCCCCCcccccccccccEE
Q 037941           42 ISHPCRDIQELPEKL---ECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKKLVIF  118 (308)
Q Consensus        42 L~l~~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~~~~l~~l~~L~~L  118 (308)
                      |.|++-..+++|...   .+..-...+++.|.+. ++|.++ ..+..|+.+.+..|.+..+|..      ++.+..|.++
T Consensus        55 l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR~~-elp~~~-~~f~~Le~liLy~n~~r~ip~~------i~~L~~lt~l  126 (722)
T KOG0532|consen   55 LLLSGRRLKEFPRGAASYDLTDTVFADLSRNRFS-ELPEEA-CAFVSLESLILYHNCIRTIPEA------ICNLEALTFL  126 (722)
T ss_pred             cccccchhhcCCCccccccccchhhhhccccccc-cCchHH-HHHHHHHHHHHHhccceecchh------hhhhhHHHHh
Confidence            455555555544433   4444455556655554 455554 3555666666666666666665      5666666666


Q ss_pred             eecCCcCcccchhhhCcCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCcccccccCCcccchhhhhcCCCCCEEE
Q 037941          119 SFRNSHIEQLPEEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEVEGQNNASLAELNQLSRLTTLE  198 (308)
Q Consensus       119 ~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~  198 (308)
                      +++.|.++.+|..+..++ |+.|-+++|. ++.+|.+ ++....|.+|+.+.|.+.        ..+..++.+..|+.|.
T Consensus       127 ~ls~NqlS~lp~~lC~lp-Lkvli~sNNk-l~~lp~~-ig~~~tl~~ld~s~nei~--------slpsql~~l~slr~l~  195 (722)
T KOG0532|consen  127 DLSSNQLSHLPDGLCDLP-LKVLIVSNNK-LTSLPEE-IGLLPTLAHLDVSKNEIQ--------SLPSQLGYLTSLRDLN  195 (722)
T ss_pred             hhccchhhcCChhhhcCc-ceeEEEecCc-cccCCcc-cccchhHHHhhhhhhhhh--------hchHHhhhHHHHHHHH
Confidence            666666666666555544 5556566555 5666665 455566666666666555        3445556666666666


Q ss_pred             eeeccCccccchhhccCCceeEeeccCccc---ccCCCCcCceEEEeecC
Q 037941          199 MLILDAQVMPRELFSLGLERNKIFLGDVWS---WTGKYETSRTLKLKLDN  245 (308)
Q Consensus       199 l~~~~~~~~p~~~~~~~L~~l~i~~~~~~~---~~~~~~~L~~L~L~~~~  245 (308)
                      +..|.+..+|+......|.+|+++.+.+..   .+..+..|++|.|..|.
T Consensus       196 vrRn~l~~lp~El~~LpLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNP  245 (722)
T KOG0532|consen  196 VRRNHLEDLPEELCSLPLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNP  245 (722)
T ss_pred             HhhhhhhhCCHHHhCCceeeeecccCceeecchhhhhhhhheeeeeccCC
Confidence            666666666666666666666666555333   34445555555555553

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.08  E-value=2.3e-11  Score=105.07  Aligned_cols=198  Identities=15%  Similarity=0.158  Sum_probs=102.6

Q ss_pred             CCCCccEEEccCCCCCCCCC-CCCCcccccccccccEEeecCCcCc---ccchhhhCcCCCCEEecCCCCCCCccCcchh
Q 037941           82 GVPSLQVLSLNGFHFPSLPS-TLGDVATVGVLKKLVIFSFRNSHIE---QLPEEIGQLTRLKLLDLSTCSKLKSIRPNVI  157 (308)
Q Consensus        82 ~l~~L~~L~l~~~~~~~lp~-~~~~~~~l~~l~~L~~L~l~~~~i~---~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~  157 (308)
                      ++++|+...|.++.....+. +.     ...+++++.||+++|-+.   .+-+....+++|+.|+++.|...-......-
T Consensus       119 n~kkL~~IsLdn~~V~~~~~~~~-----~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~  193 (505)
T KOG3207|consen  119 NLKKLREISLDNYRVEDAGIEEY-----SKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTT  193 (505)
T ss_pred             hHHhhhheeecCccccccchhhh-----hhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccch
Confidence            46666666676666654432 11     556777777777777655   3334456677777777777653222222222


Q ss_pred             cCCCCCceEEccCCcccccccCCcccchhhhhcCCCCCEEEeeecc-Ccc-ccchhhccCCceeEeeccCcccc-----c
Q 037941          158 SNLPRLEELYMGNSFTHWEVEGQNNASLAELNQLSRLTTLEMLILD-AQV-MPRELFSLGLERNKIFLGDVWSW-----T  230 (308)
Q Consensus       158 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~-~p~~~~~~~L~~l~i~~~~~~~~-----~  230 (308)
                      ..+++|+.|.+++|.+++.      ....-+..+|.|+.|.+..|. +.. -.+.-....|+.|++..+.+.++     .
T Consensus       194 ~~l~~lK~L~l~~CGls~k------~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~  267 (505)
T KOG3207|consen  194 LLLSHLKQLVLNSCGLSWK------DVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKV  267 (505)
T ss_pred             hhhhhhheEEeccCCCCHH------HHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccccccccccc
Confidence            3456677777777776622      223444566777777777663 111 11111125566666655554332     3


Q ss_pred             CCCCcCceEEEeecCchhh--hhh----HHHHhcccceeecCCccchhhhhhccCCCCCCcccEEec
Q 037941          231 GKYETSRTLKLKLDNRMYL--EHG----IKMLLRRTEDLHLDKLNGLQNVLHELDGEGFPRLKHLLV  291 (308)
Q Consensus       231 ~~~~~L~~L~L~~~~~~~~--~~~----~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l  291 (308)
                      +.++.|..|.++.+.....  +++    ....|++|++|.+.. |.++++...-.....++|+.|.+
T Consensus       268 ~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~-N~I~~w~sl~~l~~l~nlk~l~~  333 (505)
T KOG3207|consen  268 GTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISE-NNIRDWRSLNHLRTLENLKHLRI  333 (505)
T ss_pred             ccccchhhhhccccCcchhcCCCccchhhhcccccceeeeccc-Cccccccccchhhccchhhhhhc
Confidence            4566666666665543322  111    112356777777766 44444322111123445555543

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.03  E-value=1.3e-11  Score=109.87  Aligned_cols=156  Identities=22%  Similarity=0.303  Sum_probs=117.3

Q ss_pred             CCeeEEeecCCCCCCCCcC-CCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCCCCCCccccccccccc
Q 037941           38 DPIAISHPCRDIQELPEKL-ECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKKLV  116 (308)
Q Consensus        38 ~l~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~~~~l~~l~~L~  116 (308)
                      .+..+.+..|.+..+|..+ ++..|++++++.|++. .+|..++  .--|++|-+++|++..+|.+      ++.+..|.
T Consensus        99 ~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC--~lpLkvli~sNNkl~~lp~~------ig~~~tl~  169 (722)
T KOG0532|consen   99 SLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLS-HLPDGLC--DLPLKVLIVSNNKLTSLPEE------IGLLPTLA  169 (722)
T ss_pred             HHHHHHHHhccceecchhhhhhhHHHHhhhccchhh-cCChhhh--cCcceeEEEecCccccCCcc------cccchhHH
Confidence            3444555555666666666 7777888888888776 5566552  45578888888888888888      77778888


Q ss_pred             EEeecCCcCcccchhhhCcCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCcccccccCCcccchhhhhcCCCCCE
Q 037941          117 IFSFRNSHIEQLPEEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEVEGQNNASLAELNQLSRLTT  196 (308)
Q Consensus       117 ~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~  196 (308)
                      .|+.++|.+..+|..++.+.+|+.|++..|. +..+|++ .. .-.|..||++.|++.        ..+..|..|+.|++
T Consensus       170 ~ld~s~nei~slpsql~~l~slr~l~vrRn~-l~~lp~E-l~-~LpLi~lDfScNkis--------~iPv~fr~m~~Lq~  238 (722)
T KOG0532|consen  170 HLDVSKNEIQSLPSQLGYLTSLRDLNVRRNH-LEDLPEE-LC-SLPLIRLDFSCNKIS--------YLPVDFRKMRHLQV  238 (722)
T ss_pred             HhhhhhhhhhhchHHhhhHHHHHHHHHhhhh-hhhCCHH-Hh-CCceeeeecccCcee--------ecchhhhhhhhhee
Confidence            8888888888888888888888888888887 6677776 44 345778888888877        45568888888888


Q ss_pred             EEeeeccCccccchhhc
Q 037941          197 LEMLILDAQVMPRELFS  213 (308)
Q Consensus       197 L~l~~~~~~~~p~~~~~  213 (308)
                      |-+.+|.+++=|..++.
T Consensus       239 l~LenNPLqSPPAqIC~  255 (722)
T KOG0532|consen  239 LQLENNPLQSPPAQICE  255 (722)
T ss_pred             eeeccCCCCCChHHHHh
Confidence            88888888887777765

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.02  E-value=2.9e-10  Score=102.36  Aligned_cols=105  Identities=30%  Similarity=0.406  Sum_probs=48.6

Q ss_pred             CCCCccEEEecCCCCcCCCCchhhcCCC-CccEEEccCCCCCCCCCCCCCcccccccccccEEeecCCcCcccchhhhCc
Q 037941           57 ECPKLKLFFLFSEKLSLVIPDLFFEGVP-SLQVLSLNGFHFPSLPSTLGDVATVGVLKKLVIFSFRNSHIEQLPEEIGQL  135 (308)
Q Consensus        57 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~lp~~~~~~~~l~~l~~L~~L~l~~~~i~~l~~~~~~l  135 (308)
                      ..+.++.+.+.++.++ .++... ..+. +|+.|+++.|.+..+|..      ++.+++|+.|+++.|.+.++|...+..
T Consensus       114 ~~~~l~~L~l~~n~i~-~i~~~~-~~~~~nL~~L~l~~N~i~~l~~~------~~~l~~L~~L~l~~N~l~~l~~~~~~~  185 (394)
T COG4886         114 ELTNLTSLDLDNNNIT-DIPPLI-GLLKSNLKELDLSDNKIESLPSP------LRNLPNLKNLDLSFNDLSDLPKLLSNL  185 (394)
T ss_pred             cccceeEEecCCcccc-cCcccc-ccchhhcccccccccchhhhhhh------hhccccccccccCCchhhhhhhhhhhh
Confidence            3444555555554444 233222 1221 455555555555554433      444555555555555555555444445


Q ss_pred             CCCCEEecCCCCCCCccCcchhcCCCCCceEEccCC
Q 037941          136 TRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNS  171 (308)
Q Consensus       136 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~  171 (308)
                      ++|+.|++++|. +..+|.. +..+..|+.+.+++|
T Consensus       186 ~~L~~L~ls~N~-i~~l~~~-~~~~~~L~~l~~~~N  219 (394)
T COG4886         186 SNLNNLDLSGNK-ISDLPPE-IELLSALEELDLSNN  219 (394)
T ss_pred             hhhhheeccCCc-cccCchh-hhhhhhhhhhhhcCC
Confidence            555555555544 4444442 223333555555544

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.01  E-value=3.7e-10  Score=101.69  Aligned_cols=155  Identities=25%  Similarity=0.343  Sum_probs=70.2

Q ss_pred             CCCeeEEeecCCCCCCCCcC-CCC-CccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCCCCCCccccccccc
Q 037941           37 KDPIAISHPCRDIQELPEKL-ECP-KLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKK  114 (308)
Q Consensus        37 ~~l~~L~l~~~~~~~~~~~~-~~~-~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~~~~l~~l~~  114 (308)
                      +.++.+++.++.+.++++.. ... +|+.|++++|.+. .++..+ +.++.|+.|++++|.+..+|..      .+.+++
T Consensus       116 ~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~-~~l~~L~~L~l~~N~l~~l~~~------~~~~~~  187 (394)
T COG4886         116 TNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIE-SLPSPL-RNLPNLKNLDLSFNDLSDLPKL------LSNLSN  187 (394)
T ss_pred             cceeEEecCCcccccCccccccchhhcccccccccchh-hhhhhh-hccccccccccCCchhhhhhhh------hhhhhh
Confidence            34445555555555554444 221 4555555555443 222111 3455555555555555555543      334455


Q ss_pred             ccEEeecCCcCcccchhhhCcCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCcccccccCCcccchhhhhcCCCC
Q 037941          115 LVIFSFRNSHIEQLPEEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEVEGQNNASLAELNQLSRL  194 (308)
Q Consensus       115 L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L  194 (308)
                      |+.|++++|.++.+|..+.....|+.+.+++|. ....+.. +.++.++..+.+.+|++.        ..+..++.++.+
T Consensus       188 L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~-~~~~~~~-~~~~~~l~~l~l~~n~~~--------~~~~~~~~l~~l  257 (394)
T COG4886         188 LNNLDLSGNKISDLPPEIELLSALEELDLSNNS-IIELLSS-LSNLKNLSGLELSNNKLE--------DLPESIGNLSNL  257 (394)
T ss_pred             hhheeccCCccccCchhhhhhhhhhhhhhcCCc-ceecchh-hhhcccccccccCCceee--------eccchhcccccc
Confidence            555555555555555544444445555555543 1122222 344444444444444433        112333444445


Q ss_pred             CEEEeeeccCccccc
Q 037941          195 TTLEMLILDAQVMPR  209 (308)
Q Consensus       195 ~~L~l~~~~~~~~p~  209 (308)
                      +.|+++.|.+..++.
T Consensus       258 ~~L~~s~n~i~~i~~  272 (394)
T COG4886         258 ETLDLSNNQISSISS  272 (394)
T ss_pred             ceecccccccccccc
Confidence            555555554444444

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.96  E-value=6.1e-11  Score=98.15  Aligned_cols=133  Identities=15%  Similarity=0.138  Sum_probs=60.1

Q ss_pred             CCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCCCCCCcccccccccccEEeecCCcCcccchhhhCcCC
Q 037941           58 CPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKKLVIFSFRNSHIEQLPEEIGQLTR  137 (308)
Q Consensus        58 ~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~~~~l~~l~~L~~L~l~~~~i~~l~~~~~~l~~  137 (308)
                      +..|+++++++|.++ .+..++ .-++.+++|++++|.+..+-.       +..+++|..||+++|.++++...-.++-+
T Consensus       283 Wq~LtelDLS~N~I~-~iDESv-KL~Pkir~L~lS~N~i~~v~n-------La~L~~L~~LDLS~N~Ls~~~Gwh~KLGN  353 (490)
T KOG1259|consen  283 WQELTELDLSGNLIT-QIDESV-KLAPKLRRLILSQNRIRTVQN-------LAELPQLQLLDLSGNLLAECVGWHLKLGN  353 (490)
T ss_pred             Hhhhhhccccccchh-hhhhhh-hhccceeEEeccccceeeehh-------hhhcccceEeecccchhHhhhhhHhhhcC
Confidence            334444455554443 222222 234445555555554443333       34445555555555555444443444445


Q ss_pred             CCEEecCCCCCCCccCcchhcCCCCCceEEccCCcccccccCCcccchhhhhcCCCCCEEEeeeccCcccc
Q 037941          138 LKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEVEGQNNASLAELNQLSRLTTLEMLILDAQVMP  208 (308)
Q Consensus       138 L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p  208 (308)
                      .+.|.++.|. ++.+..  ++++-+|..||+.+|+|....      ....++++|.|+++.+.+|.+..+|
T Consensus       354 IKtL~La~N~-iE~LSG--L~KLYSLvnLDl~~N~Ie~ld------eV~~IG~LPCLE~l~L~~NPl~~~v  415 (490)
T KOG1259|consen  354 IKTLKLAQNK-IETLSG--LRKLYSLVNLDLSSNQIEELD------EVNHIGNLPCLETLRLTGNPLAGSV  415 (490)
T ss_pred             Eeeeehhhhh-Hhhhhh--hHhhhhheeccccccchhhHH------HhcccccccHHHHHhhcCCCccccc
Confidence            5555555544 444433  444445555555555444111      1233445555555555555544443

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.93  E-value=3.9e-10  Score=95.04  Aligned_cols=181  Identities=15%  Similarity=0.063  Sum_probs=103.6

Q ss_pred             ccccccEEeecCCcCc-ccc----hhhhCcCCCCEEecCCCCCCCccCcch-------------hcCCCCCceEEccCCc
Q 037941          111 VLKKLVIFSFRNSHIE-QLP----EEIGQLTRLKLLDLSTCSKLKSIRPNV-------------ISNLPRLEELYMGNSF  172 (308)
Q Consensus       111 ~l~~L~~L~l~~~~i~-~l~----~~~~~l~~L~~L~l~~~~~~~~~~~~~-------------~~~l~~L~~L~l~~~~  172 (308)
                      ..++|++++++.|-+. .-+    .-+..++.|++|++.+|. +.....+.             .+.-+.|+++....|+
T Consensus        90 ~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~G-lg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNr  168 (382)
T KOG1909|consen   90 GCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCG-LGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNR  168 (382)
T ss_pred             cCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCC-CChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccc
Confidence            4456777777776554 221    224556677777777776 44332221             3445678888888887


Q ss_pred             ccccccCCcccchhhhhcCCCCCEEEeeeccCcc--c---cchhh-ccCCceeEeeccCccc--------ccCCCCcCce
Q 037941          173 THWEVEGQNNASLAELNQLSRLTTLEMLILDAQV--M---PRELF-SLGLERNKIFLGDVWS--------WTGKYETSRT  238 (308)
Q Consensus       173 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~--~---p~~~~-~~~L~~l~i~~~~~~~--------~~~~~~~L~~  238 (308)
                      +...   +...+...+..++.|+.+.+..|.+..  +   ...+. .++|+.|++.++.+..        ..+.++.|+.
T Consensus       169 len~---ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~E  245 (382)
T KOG1909|consen  169 LENG---GATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRE  245 (382)
T ss_pred             cccc---cHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchhee
Confidence            6622   222334566677788888888775421  1   11111 1677777776665432        2445567777


Q ss_pred             EEEeecCc-----hhhhhhHHHHhcccceeecCCccchhhhhhcc--CCCCCCcccEEeccccc
Q 037941          239 LKLKLDNR-----MYLEHGIKMLLRRTEDLHLDKLNGLQNVLHEL--DGEGFPRLKHLLVQNAS  295 (308)
Q Consensus       239 L~L~~~~~-----~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~--~~~~~~~L~~L~l~~c~  295 (308)
                      ++++.|..     ......+...+|+|+.|.+.++.-.++....+  .....|.|+.|++.+|.
T Consensus       246 l~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~  309 (382)
T KOG1909|consen  246 LNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNR  309 (382)
T ss_pred             ecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence            77766532     22244444556889999988743333222111  11337889999998883

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.91  E-value=1.1e-10  Score=96.69  Aligned_cols=126  Identities=20%  Similarity=0.222  Sum_probs=89.3

Q ss_pred             CCCCccEEEccCCCCCCCCCCCCCcccccccccccEEeecCCcCcccchhhhCcCCCCEEecCCCCCCCccCcchhcCCC
Q 037941           82 GVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKKLVIFSFRNSHIEQLPEEIGQLTRLKLLDLSTCSKLKSIRPNVISNLP  161 (308)
Q Consensus        82 ~l~~L~~L~l~~~~~~~lp~~~~~~~~l~~l~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~  161 (308)
                      ..+.|..+|+++|.++.+..+      ..-.++++.|++++|.+..+.. +..+++|+.|++++|. +..+... -.++.
T Consensus       282 TWq~LtelDLS~N~I~~iDES------vKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~-Ls~~~Gw-h~KLG  352 (490)
T KOG1259|consen  282 TWQELTELDLSGNLITQIDES------VKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNL-LAECVGW-HLKLG  352 (490)
T ss_pred             hHhhhhhccccccchhhhhhh------hhhccceeEEeccccceeeehh-hhhcccceEeecccch-hHhhhhh-Hhhhc
Confidence            446688888888888877776      6777888888888888887766 7788888888888887 5555543 45677


Q ss_pred             CCceEEccCCcccccccCCcccchhhhhcCCCCCEEEeeeccCccccc--hhhc-cCCceeEeeccC
Q 037941          162 RLEELYMGNSFTHWEVEGQNNASLAELNQLSRLTTLEMLILDAQVMPR--ELFS-LGLERNKIFLGD  225 (308)
Q Consensus       162 ~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~--~~~~-~~L~~l~i~~~~  225 (308)
                      |++.|.+++|.+.         ....++.+-.|..||+.+|++..+..  .+.. +.|+.+.+.++.
T Consensus       353 NIKtL~La~N~iE---------~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NP  410 (490)
T KOG1259|consen  353 NIKTLKLAQNKIE---------TLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNP  410 (490)
T ss_pred             CEeeeehhhhhHh---------hhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCC
Confidence            8888888888766         23456666778888888887654432  2222 555555555444

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.84  E-value=2.7e-09  Score=69.05  Aligned_cols=59  Identities=27%  Similarity=0.423  Sum_probs=27.3

Q ss_pred             CccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCCCCCCcccccccccccEEeecCCc
Q 037941           60 KLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKKLVIFSFRNSH  124 (308)
Q Consensus        60 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~~~~l~~l~~L~~L~l~~~~  124 (308)
                      +|++|++++|.+. .++...|.++++|++|++++|.+..+|+..     +..+++|++|++++|+
T Consensus         2 ~L~~L~l~~n~l~-~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~-----f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNNKLT-EIPPDSFSNLPNLETLDLSNNNLTSIPPDA-----FSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSSTES-EECTTTTTTGTTESEEEETSSSESEEETTT-----TTTSTTESEEEETSSS
T ss_pred             cCcEEECCCCCCC-ccCHHHHcCCCCCCEeEccCCccCccCHHH-----HcCCCCCCEEeCcCCc
Confidence            4444455544444 334434444444555555444444444432     4444444444444443

...

>PLN03150 hypothetical protein; Provisional

Probab=98.80  E-value=1.9e-08  Score=95.38  Aligned_cols=104  Identities=23%  Similarity=0.309  Sum_probs=67.0

Q ss_pred             ccEEEccCCCCC-CCCCCCCCcccccccccccEEeecCCcCc-ccchhhhCcCCCCEEecCCCCCCCccCcchhcCCCCC
Q 037941           86 LQVLSLNGFHFP-SLPSTLGDVATVGVLKKLVIFSFRNSHIE-QLPEEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRL  163 (308)
Q Consensus        86 L~~L~l~~~~~~-~lp~~~~~~~~l~~l~~L~~L~l~~~~i~-~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L  163 (308)
                      +..|+|++|.+. .+|..      ++.+++|++|++++|.+. .+|..++.+++|+.|++++|.....+|.. ++++++|
T Consensus       420 v~~L~L~~n~L~g~ip~~------i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~-l~~L~~L  492 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPND------ISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPES-LGQLTSL  492 (623)
T ss_pred             EEEEECCCCCccccCCHH------HhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchH-HhcCCCC
Confidence            566677777766 55665      667777777777777766 66766777777777777777644456655 6677777


Q ss_pred             ceEEccCCcccccccCCcccchhhhhc-CCCCCEEEeeecc
Q 037941          164 EELYMGNSFTHWEVEGQNNASLAELNQ-LSRLTTLEMLILD  203 (308)
Q Consensus       164 ~~L~l~~~~~~~~~~~~~~~~~~~l~~-l~~L~~L~l~~~~  203 (308)
                      +.|++++|.+.+..+       ..+.. ..++..+++.+|.
T Consensus       493 ~~L~Ls~N~l~g~iP-------~~l~~~~~~~~~l~~~~N~  526 (623)
T PLN03150        493 RILNLNGNSLSGRVP-------AALGGRLLHRASFNFTDNA  526 (623)
T ss_pred             CEEECcCCcccccCC-------hHHhhccccCceEEecCCc
Confidence            777777776663332       33332 2345566666664

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.74  E-value=9.3e-09  Score=66.49  Aligned_cols=58  Identities=24%  Similarity=0.471  Sum_probs=30.4

Q ss_pred             CccEEEccCCCCCCCCCCCCCcccccccccccEEeecCCcCcccc-hhhhCcCCCCEEecCCCC
Q 037941           85 SLQVLSLNGFHFPSLPSTLGDVATVGVLKKLVIFSFRNSHIEQLP-EEIGQLTRLKLLDLSTCS  147 (308)
Q Consensus        85 ~L~~L~l~~~~~~~lp~~~~~~~~l~~l~~L~~L~l~~~~i~~l~-~~~~~l~~L~~L~l~~~~  147 (308)
                      +|++|++++|.+..+|+..     +..+++|++|++++|.++.++ ..+..+++|+.|++++|.
T Consensus         2 ~L~~L~l~~n~l~~i~~~~-----f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDS-----FSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSSTESEECTTT-----TTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCCCCCCccCHHH-----HcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            4555555555555555443     555555555555555555444 234555555555555543

...

>PLN03150 hypothetical protein; Provisional

Probab=98.70  E-value=4.6e-08  Score=92.79  Aligned_cols=107  Identities=21%  Similarity=0.337  Sum_probs=92.9

Q ss_pred             CccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCC-CCCCCCCCcccccccccccEEeecCCcCc-ccchhhhCcCC
Q 037941           60 KLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFP-SLPSTLGDVATVGVLKKLVIFSFRNSHIE-QLPEEIGQLTR  137 (308)
Q Consensus        60 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~lp~~~~~~~~l~~l~~L~~L~l~~~~i~-~l~~~~~~l~~  137 (308)
                      .++.|++.+|.+.+.+|..+ ..+++|+.|++++|.+. .+|..      ++.+++|++|++++|.++ .+|..++.+++
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i-~~L~~L~~L~Ls~N~l~g~iP~~------~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~  491 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDI-SKLRHLQSINLSGNSIRGNIPPS------LGSITSLEVLDLSYNSFNGSIPESLGQLTS  491 (623)
T ss_pred             EEEEEECCCCCccccCCHHH-hCCCCCCEEECCCCcccCcCChH------HhCCCCCCEEECCCCCCCCCCchHHhcCCC
Confidence            47889999999998888886 68999999999999998 78887      899999999999999998 89999999999


Q ss_pred             CCEEecCCCCCCCccCcchhcC-CCCCceEEccCCccc
Q 037941          138 LKLLDLSTCSKLKSIRPNVISN-LPRLEELYMGNSFTH  174 (308)
Q Consensus       138 L~~L~l~~~~~~~~~~~~~~~~-l~~L~~L~l~~~~~~  174 (308)
                      |+.|++++|.....+|.. +.. ..++..+++.+|...
T Consensus       492 L~~L~Ls~N~l~g~iP~~-l~~~~~~~~~l~~~~N~~l  528 (623)
T PLN03150        492 LRILNLNGNSLSGRVPAA-LGGRLLHRASFNFTDNAGL  528 (623)
T ss_pred             CCEEECcCCcccccCChH-HhhccccCceEEecCCccc
Confidence            999999999977788887 444 356778888887644

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.60  E-value=4.4e-09  Score=95.16  Aligned_cols=186  Identities=22%  Similarity=0.231  Sum_probs=93.4

Q ss_pred             CCeeEEeecCCCCCCCCcC-CCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCCCCCCccccccccccc
Q 037941           38 DPIAISHPCRDIQELPEKL-ECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKKLV  116 (308)
Q Consensus        38 ~l~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~~~~l~~l~~L~  116 (308)
                      .+..+.+..+.+..+-... .+++++.+++..|.+.. +... ...+++|++|++++|.++.+..       +..++.|+
T Consensus        73 ~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~-i~~~-l~~~~~L~~L~ls~N~I~~i~~-------l~~l~~L~  143 (414)
T KOG0531|consen   73 SLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEK-IENL-LSSLVNLQVLDLSFNKITKLEG-------LSTLTLLK  143 (414)
T ss_pred             hHHhhccchhhhhhhhcccccccceeeeeccccchhh-cccc-hhhhhcchheeccccccccccc-------hhhccchh
Confidence            3344445555554422222 56666666666666552 2221 2456666666666666665555       55566666


Q ss_pred             EEeecCCcCcccchhhhCcCCCCEEecCCCCCCCccCc-chhcCCCCCceEEccCCcccccccCCcccchhhhhcCCCCC
Q 037941          117 IFSFRNSHIEQLPEEIGQLTRLKLLDLSTCSKLKSIRP-NVISNLPRLEELYMGNSFTHWEVEGQNNASLAELNQLSRLT  195 (308)
Q Consensus       117 ~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~  195 (308)
                      .|++.+|.|+.+.. +..+.+|+.+++++|. +..++. . ...+.+++.+++.+|.+.         .+..+..+..+.
T Consensus       144 ~L~l~~N~i~~~~~-~~~l~~L~~l~l~~n~-i~~ie~~~-~~~~~~l~~l~l~~n~i~---------~i~~~~~~~~l~  211 (414)
T KOG0531|consen  144 ELNLSGNLISDISG-LESLKSLKLLDLSYNR-IVDIENDE-LSELISLEELDLGGNSIR---------EIEGLDLLKKLV  211 (414)
T ss_pred             hheeccCcchhccC-CccchhhhcccCCcch-hhhhhhhh-hhhccchHHHhccCCchh---------cccchHHHHHHH
Confidence            66666666665555 4446666666666665 444443 1 245566666666666555         112222333333


Q ss_pred             EEEeeeccCccccchhhccC--CceeEeeccCccc---ccCCCCcCceEEEeec
Q 037941          196 TLEMLILDAQVMPRELFSLG--LERNKIFLGDVWS---WTGKYETSRTLKLKLD  244 (308)
Q Consensus       196 ~L~l~~~~~~~~p~~~~~~~--L~~l~i~~~~~~~---~~~~~~~L~~L~L~~~  244 (308)
                      .+++..|.+..+-.......  |+.+++..+.+..   ....+..+..+++..+
T Consensus       212 ~~~l~~n~i~~~~~l~~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n  265 (414)
T KOG0531|consen  212 LLSLLDNKISKLEGLNELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLSSN  265 (414)
T ss_pred             HhhcccccceeccCcccchhHHHHHHhcccCccccccccccccccccccchhhc
Confidence            33555554443332222222  4555554444332   2344455555555444

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.54  E-value=3.3e-08  Score=83.63  Aligned_cols=227  Identities=15%  Similarity=0.084  Sum_probs=151.7

Q ss_pred             hcCCCCeeEEeecCCCC-----CCCCcC-CCCCccEEEecCCCCcC----CCCchh------hcCCCCccEEEccCCCCC
Q 037941           34 LMQKDPIAISHPCRDIQ-----ELPEKL-ECPKLKLFFLFSEKLSL----VIPDLF------FEGVPSLQVLSLNGFHFP   97 (308)
Q Consensus        34 ~~~~~l~~L~l~~~~~~-----~~~~~~-~~~~L~~L~l~~~~~~~----~~~~~~------~~~l~~L~~L~l~~~~~~   97 (308)
                      .....++.+++++|.+.     .+.+.. .-++|+..+++.- +++    .+|+.+      +-+.++|++++||+|-|.
T Consensus        27 ~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G  105 (382)
T KOG1909|consen   27 EPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFG  105 (382)
T ss_pred             cccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccC
Confidence            45788999999999882     223333 6668888887753 222    333321      235679999999999887


Q ss_pred             -CCCCCCCCcccccccccccEEeecCCcCcccch--------------hhhCcCCCCEEecCCCCCCCccCcc----hhc
Q 037941           98 -SLPSTLGDVATVGVLKKLVIFSFRNSHIEQLPE--------------EIGQLTRLKLLDLSTCSKLKSIRPN----VIS  158 (308)
Q Consensus        98 -~lp~~~~~~~~l~~l~~L~~L~l~~~~i~~l~~--------------~~~~l~~L~~L~l~~~~~~~~~~~~----~~~  158 (308)
                       +-+..+++  -+.++..|++|.+.+|++.....              .+..-++|+.+....|. +...+..    .+.
T Consensus       106 ~~g~~~l~~--ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNr-len~ga~~~A~~~~  182 (382)
T KOG1909|consen  106 PKGIRGLEE--LLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNR-LENGGATALAEAFQ  182 (382)
T ss_pred             ccchHHHHH--HHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccc-cccccHHHHHHHHH
Confidence             33332111  15568899999999998773221              13456789999999987 6666542    366


Q ss_pred             CCCCCceEEccCCcccccccCCcccchhhhhcCCCCCEEEeeeccCccc-----cchhhc-cCCceeEeeccCccc----
Q 037941          159 NLPRLEELYMGNSFTHWEVEGQNNASLAELNQLSRLTTLEMLILDAQVM-----PRELFS-LGLERNKIFLGDVWS----  228 (308)
Q Consensus       159 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-----p~~~~~-~~L~~l~i~~~~~~~----  228 (308)
                      ..+.|+.+.+..|.|.   +.++......+..+++|+.|++.+|-++.-     ...++. ++|+.+++.++-+..    
T Consensus       183 ~~~~leevr~~qN~I~---~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~  259 (382)
T KOG1909|consen  183 SHPTLEEVRLSQNGIR---PEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAI  259 (382)
T ss_pred             hccccceEEEeccccc---CchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHH
Confidence            7789999999999887   112234446788999999999999975431     111111 667777776554332    


Q ss_pred             -----ccCCCCcCceEEEeecCchhh-----hhhHHHHhcccceeecCCc
Q 037941          229 -----WTGKYETSRTLKLKLDNRMYL-----EHGIKMLLRRTEDLHLDKL  268 (308)
Q Consensus       229 -----~~~~~~~L~~L~L~~~~~~~~-----~~~~~~~~~~L~~L~l~~~  268 (308)
                           .-...|+|+.+.+.+|.....     ...+.. -|.|++|.++++
T Consensus       260 a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~e-k~dL~kLnLngN  308 (382)
T KOG1909|consen  260 AFVDALKESAPSLEVLELAGNEITRDAALALAACMAE-KPDLEKLNLNGN  308 (382)
T ss_pred             HHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhc-chhhHHhcCCcc
Confidence                 234588999999999876543     222223 388999999984

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.53  E-value=2.9e-09  Score=88.23  Aligned_cols=172  Identities=19%  Similarity=0.068  Sum_probs=109.4

Q ss_pred             cccEEeecCCcCc--ccchhhhCcCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCc-ccccccCCcccchhhhhc
Q 037941          114 KLVIFSFRNSHIE--QLPEEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSF-THWEVEGQNNASLAELNQ  190 (308)
Q Consensus       114 ~L~~L~l~~~~i~--~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~~l~~  190 (308)
                      .|++||++...|+  .+-..++.+++|+.|.+-++..-..+... +++-.+|+.++++.|. ++      ....--.+.+
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~-iAkN~~L~~lnlsm~sG~t------~n~~~ll~~s  258 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNT-IAKNSNLVRLNLSMCSGFT------ENALQLLLSS  258 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHH-Hhccccceeeccccccccc------hhHHHHHHHh
Confidence            4778888877776  55555677777888877777633333333 5666778888887764 22      0111234567


Q ss_pred             CCCCCEEEeeeccCc-cccchh-h--ccCCceeEeecc-------CcccccCCCCcCceEEEeecCchhhhhhHH--HHh
Q 037941          191 LSRLTTLEMLILDAQ-VMPREL-F--SLGLERNKIFLG-------DVWSWTGKYETSRTLKLKLDNRMYLEHGIK--MLL  257 (308)
Q Consensus       191 l~~L~~L~l~~~~~~-~~p~~~-~--~~~L~~l~i~~~-------~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~--~~~  257 (308)
                      +..|+.|.++++... +...-. .  .++|+.|+++..       .+......++++..|+|+.+..... +.+.  ..|
T Consensus       259 cs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~-~~~~~~~kf  337 (419)
T KOG2120|consen  259 CSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKN-DCFQEFFKF  337 (419)
T ss_pred             hhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCc-hHHHHHHhc
Confidence            788888888887532 111111 1  166666665422       2233467899999999999766553 2222  236


Q ss_pred             cccceeecCCccchhhhhhccCCCCCCcccEEecccc
Q 037941          258 RRTEDLHLDKLNGLQNVLHELDGEGFPRLKHLLVQNA  294 (308)
Q Consensus       258 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c  294 (308)
                      +.|++|.+++|..+--... +...+.|.|.+|++.+|
T Consensus       338 ~~L~~lSlsRCY~i~p~~~-~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  338 NYLQHLSLSRCYDIIPETL-LELNSKPSLVYLDVFGC  373 (419)
T ss_pred             chheeeehhhhcCCChHHe-eeeccCcceEEEEeccc
Confidence            8999999999987543222 33477899999999887

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.53  E-value=1.4e-08  Score=91.99  Aligned_cols=128  Identities=19%  Similarity=0.226  Sum_probs=99.6

Q ss_pred             hcCCCCeeEEeecCCCCCCCC-cCCCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCCCCCCccccccc
Q 037941           34 LMQKDPIAISHPCRDIQELPE-KLECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVL  112 (308)
Q Consensus        34 ~~~~~l~~L~l~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~~~~l~~l  112 (308)
                      ....+++.+++.+|.+..+.. ...+++|++|++++|.++...+   +..+..|+.|++++|.+..+..       +..+
T Consensus        92 ~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~---l~~l~~L~~L~l~~N~i~~~~~-------~~~l  161 (414)
T KOG0531|consen   92 SKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEG---LSTLTLLKELNLSGNLISDISG-------LESL  161 (414)
T ss_pred             ccccceeeeeccccchhhcccchhhhhcchheeccccccccccc---hhhccchhhheeccCcchhccC-------Cccc
Confidence            457899999999999988888 4489999999999999884433   2567779999999999998877       6779


Q ss_pred             ccccEEeecCCcCcccchh-hhCcCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCccc
Q 037941          113 KKLVIFSFRNSHIEQLPEE-IGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTH  174 (308)
Q Consensus       113 ~~L~~L~l~~~~i~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~  174 (308)
                      +.|+.+++++|.+..+... ...+.+++.+++.+|. +..+..  +..+..+..+++..|.+.
T Consensus       162 ~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~-i~~i~~--~~~~~~l~~~~l~~n~i~  221 (414)
T KOG0531|consen  162 KSLKLLDLSYNRIVDIENDELSELISLEELDLGGNS-IREIEG--LDLLKKLVLLSLLDNKIS  221 (414)
T ss_pred             hhhhcccCCcchhhhhhhhhhhhccchHHHhccCCc-hhcccc--hHHHHHHHHhhcccccce
Confidence            9999999999999977775 5788899999999887 444432  334444444455555444

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.42  E-value=3.3e-09  Score=97.42  Aligned_cols=152  Identities=21%  Similarity=0.177  Sum_probs=99.5

Q ss_pred             cCCCCeeEEeecCCCCCCCCc---------------------------------CCCCCccEEEecCCCCcCCCCchhhc
Q 037941           35 MQKDPIAISHPCRDIQELPEK---------------------------------LECPKLKLFFLFSEKLSLVIPDLFFE   81 (308)
Q Consensus        35 ~~~~l~~L~l~~~~~~~~~~~---------------------------------~~~~~L~~L~l~~~~~~~~~~~~~~~   81 (308)
                      .++.||+|-+.++++..+-..                                 ...-.|.+.++++|.++ . -++.++
T Consensus       107 pF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~-~-mD~SLq  184 (1096)
T KOG1859|consen  107 PFRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLV-L-MDESLQ  184 (1096)
T ss_pred             cccceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHH-h-HHHHHH
Confidence            478999999998886322111                                 11223444455555543 1 233335


Q ss_pred             CCCCccEEEccCCCCCCCCCCCCCcccccccccccEEeecCCcCcccchhhhCcCCCCEEecCCCCCCCccCcchhcCCC
Q 037941           82 GVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKKLVIFSFRNSHIEQLPEEIGQLTRLKLLDLSTCSKLKSIRPNVISNLP  161 (308)
Q Consensus        82 ~l~~L~~L~l~~~~~~~lp~~~~~~~~l~~l~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~  161 (308)
                      -++.++.|+|+.|++.++-.       +..+++|++||+++|.+..+|..-..-.+|+.|++++|. ++.+-.  +.++.
T Consensus       185 ll~ale~LnLshNk~~~v~~-------Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN~-l~tL~g--ie~Lk  254 (1096)
T KOG1859|consen  185 LLPALESLNLSHNKFTKVDN-------LRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNNA-LTTLRG--IENLK  254 (1096)
T ss_pred             HHHHhhhhccchhhhhhhHH-------HHhcccccccccccchhccccccchhhhhheeeeecccH-HHhhhh--HHhhh
Confidence            67788888888888876653       778888888888888888777632222348888888887 666654  67888


Q ss_pred             CCceEEccCCcccccccCCcccchhhhhcCCCCCEEEeeeccC
Q 037941          162 RLEELYMGNSFTHWEVEGQNNASLAELNQLSRLTTLEMLILDA  204 (308)
Q Consensus       162 ~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  204 (308)
                      +|+.||++.|.+.+...      ..-+..+..|+.|-+.+|.+
T Consensus       255 sL~~LDlsyNll~~hse------L~pLwsLs~L~~L~LeGNPl  291 (1096)
T KOG1859|consen  255 SLYGLDLSYNLLSEHSE------LEPLWSLSSLIVLWLEGNPL  291 (1096)
T ss_pred             hhhccchhHhhhhcchh------hhHHHHHHHHHHHhhcCCcc
Confidence            88888888887774322      34455666677777777753

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.38  E-value=7.8e-08  Score=79.87  Aligned_cols=182  Identities=18%  Similarity=0.149  Sum_probs=95.1

Q ss_pred             cccccEEeecCCcCc---ccchhhhCcCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCcccccccCCcccchhhh
Q 037941          112 LKKLVIFSFRNSHIE---QLPEEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEVEGQNNASLAEL  188 (308)
Q Consensus       112 l~~L~~L~l~~~~i~---~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l  188 (308)
                      ...++++|+.+|.|+   ++...+..++.|++|+++.|+.-..+... -....+|+.|-+.++.+.+..      .-..+
T Consensus        70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~l-p~p~~nl~~lVLNgT~L~w~~------~~s~l  142 (418)
T KOG2982|consen   70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSL-PLPLKNLRVLVLNGTGLSWTQ------STSSL  142 (418)
T ss_pred             hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccC-cccccceEEEEEcCCCCChhh------hhhhh
Confidence            466788888888777   55555677888888888888733322221 124567888888887766322      22455


Q ss_pred             hcCCCCCEEEeeeccCccccchh-----hccCCceeEeeccCcccc------cCCCCcCceEEEeecCchhh--hhhHHH
Q 037941          189 NQLSRLTTLEMLILDAQVMPREL-----FSLGLERNKIFLGDVWSW------TGKYETSRTLKLKLDNRMYL--EHGIKM  255 (308)
Q Consensus       189 ~~l~~L~~L~l~~~~~~~~p~~~-----~~~~L~~l~i~~~~~~~~------~~~~~~L~~L~L~~~~~~~~--~~~~~~  255 (308)
                      ..+|.++.|+++.|....+-..-     -.+.+.++.+..+....|      ...+|++..+-+..|...+.  ..+. .
T Consensus       143 ~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~s-e  221 (418)
T KOG2982|consen  143 DDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGS-E  221 (418)
T ss_pred             hcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccC-C
Confidence            67777888888877533221100     002333333332222222      22345555555544422211  1111 1


Q ss_pred             HhcccceeecCCccchhhhhhccCCCCCCcccEEecccccccccccc
Q 037941          256 LLRRTEDLHLDKLNGLQNVLHELDGEGFPRLKHLLVQNASEILYIVS  302 (308)
Q Consensus       256 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~  302 (308)
                      .||.+..|.+.. +.+.++...-...+||.|..|.+.+.|-++.+-.
T Consensus       222 ~~p~~~~LnL~~-~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~  267 (418)
T KOG2982|consen  222 PFPSLSCLNLGA-NNIDSWASVDALNGFPQLVDLRVSENPLSDPLRG  267 (418)
T ss_pred             CCCcchhhhhcc-cccccHHHHHHHcCCchhheeeccCCcccccccC
Confidence            235555555544 4444433322235566666666666666555443

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.38  E-value=1.6e-08  Score=83.84  Aligned_cols=174  Identities=14%  Similarity=0.101  Sum_probs=89.8

Q ss_pred             CccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCC-CCCCCCCCcccccccccccEEeecCCc-Ccc--cchhhhCc
Q 037941           60 KLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFP-SLPSTLGDVATVGVLKKLVIFSFRNSH-IEQ--LPEEIGQL  135 (308)
Q Consensus        60 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~lp~~~~~~~~l~~l~~L~~L~l~~~~-i~~--l~~~~~~l  135 (308)
                      .|+.++++...++..-...+++.+.+|+-|.+.++.+. .+-..      +.+-.+|+.|+++.+. +++  ..-.+..+
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~------iAkN~~L~~lnlsm~sG~t~n~~~ll~~sc  259 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNT------IAKNSNLVRLNLSMCSGFTENALQLLLSSC  259 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHH------HhccccceeeccccccccchhHHHHHHHhh
Confidence            46666666666554333444556666777777666665 23333      5555667777777663 552  22335667


Q ss_pred             CCCCEEecCCCCCCCccCcchhcCC-CCCceEEccCCcccccccCCcccchhhh-hcCCCCCEEEeeecc-Ccc--ccch
Q 037941          136 TRLKLLDLSTCSKLKSIRPNVISNL-PRLEELYMGNSFTHWEVEGQNNASLAEL-NQLSRLTTLEMLILD-AQV--MPRE  210 (308)
Q Consensus       136 ~~L~~L~l~~~~~~~~~~~~~~~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~l-~~l~~L~~L~l~~~~-~~~--~p~~  210 (308)
                      +.|+.|++++|....+.-..++.+. ++|+.|++++++-.-     ..+.+..+ ..+++|.+||++++- ++.  +...
T Consensus       260 s~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl-----~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~  334 (419)
T KOG2120|consen  260 SRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNL-----QKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEF  334 (419)
T ss_pred             hhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhh-----hhhHHHHHHHhCCceeeeccccccccCchHHHHH
Confidence            7777777777764433322223332 366777776664220     01122222 467777788877763 111  1111


Q ss_pred             hhccCCceeEeeccCccc-----ccCCCCcCceEEEeec
Q 037941          211 LFSLGLERNKIFLGDVWS-----WTGKYETSRTLKLKLD  244 (308)
Q Consensus       211 ~~~~~L~~l~i~~~~~~~-----~~~~~~~L~~L~L~~~  244 (308)
                      +.+..|+++.++.+....     .....|.|.+|+.-++
T Consensus       335 ~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  335 FKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGC  373 (419)
T ss_pred             HhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccc
Confidence            222555555543322111     1345555666655443

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.27  E-value=5.9e-07  Score=53.47  Aligned_cols=34  Identities=32%  Similarity=0.526  Sum_probs=16.6

Q ss_pred             cccEEeecCCcCcccchhhhCcCCCCEEecCCCC
Q 037941          114 KLVIFSFRNSHIEQLPEEIGQLTRLKLLDLSTCS  147 (308)
Q Consensus       114 ~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~  147 (308)
                      +|++|++++|.++++|..++++++|+.|++++|.
T Consensus         2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~   35 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNP   35 (44)
T ss_dssp             T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSC
T ss_pred             cceEEEccCCCCcccCchHhCCCCCCEEEecCCC
Confidence            4455555555555555445555555555555554

...

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.26  E-value=1.5e-06  Score=51.74  Aligned_cols=41  Identities=22%  Similarity=0.386  Sum_probs=30.6

Q ss_pred             CCccEEEccCCCCCCCCCCCCCcccccccccccEEeecCCcCcccch
Q 037941           84 PSLQVLSLNGFHFPSLPSTLGDVATVGVLKKLVIFSFRNSHIEQLPE  130 (308)
Q Consensus        84 ~~L~~L~l~~~~~~~lp~~~~~~~~l~~l~~L~~L~l~~~~i~~l~~  130 (308)
                      ++|++|++++|.++.+|+.      ++++++|++|++++|++++++.
T Consensus         1 ~~L~~L~l~~N~i~~l~~~------l~~l~~L~~L~l~~N~i~~i~~   41 (44)
T PF12799_consen    1 KNLEELDLSNNQITDLPPE------LSNLPNLETLNLSNNPISDISP   41 (44)
T ss_dssp             TT-SEEEETSSS-SSHGGH------GTTCTTSSEEEETSSCCSBEGG
T ss_pred             CcceEEEccCCCCcccCch------HhCCCCCCEEEecCCCCCCCcC
Confidence            4678888888888888776      7788888888888888776654

...

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.23  E-value=4.1e-07  Score=86.52  Aligned_cols=136  Identities=20%  Similarity=0.213  Sum_probs=69.9

Q ss_pred             CCccEEEecCCCC-cCCCCchhhcCCCCccEEEccCCCCC--CCCCCCCCcccccccccccEEeecCCcCcccchhhhCc
Q 037941           59 PKLKLFFLFSEKL-SLVIPDLFFEGVPSLQVLSLNGFHFP--SLPSTLGDVATVGVLKKLVIFSFRNSHIEQLPEEIGQL  135 (308)
Q Consensus        59 ~~L~~L~l~~~~~-~~~~~~~~~~~l~~L~~L~l~~~~~~--~lp~~~~~~~~l~~l~~L~~L~l~~~~i~~l~~~~~~l  135 (308)
                      .+|++|+++|... ....+..+...+|.|+.|.+++-.+.  ++-.-      ..++++|+.||+++++++.+ ..++.+
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~l------c~sFpNL~sLDIS~TnI~nl-~GIS~L  194 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQL------CASFPNLRSLDISGTNISNL-SGISRL  194 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHH------hhccCccceeecCCCCccCc-HHHhcc
Confidence            4566666666442 22333444345666666666654443  11222      34567777777777777766 446777


Q ss_pred             CCCCEEecCCCCCCCccCc-chhcCCCCCceEEccCCcccccccCCcccchhhhhcCCCCCEEEeeecc
Q 037941          136 TRLKLLDLSTCSKLKSIRP-NVISNLPRLEELYMGNSFTHWEVEGQNNASLAELNQLSRLTTLEMLILD  203 (308)
Q Consensus       136 ~~L~~L~l~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  203 (308)
                      ++|+.|.+.+-. ++.... ..+.++++|++||++..+...... -.....+--..+|+|+.||.+++.
T Consensus       195 knLq~L~mrnLe-~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~-ii~qYlec~~~LpeLrfLDcSgTd  261 (699)
T KOG3665|consen  195 KNLQVLSMRNLE-FESYQDLIDLFNLKKLRVLDISRDKNNDDTK-IIEQYLECGMVLPELRFLDCSGTD  261 (699)
T ss_pred             ccHHHHhccCCC-CCchhhHHHHhcccCCCeeeccccccccchH-HHHHHHHhcccCccccEEecCCcc
Confidence            777777666533 222111 114566777777776554331110 000001111346677777777654

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.21  E-value=1.8e-06  Score=71.03  Aligned_cols=144  Identities=20%  Similarity=0.202  Sum_probs=92.7

Q ss_pred             CCCCccEEEecCCCCcCCCCchh---hcCCCCccEEEccCCCCC----CCCCCC-CCcccccccccccEEeecCCcCc-c
Q 037941           57 ECPKLKLFFLFSEKLSLVIPDLF---FEGVPSLQVLSLNGFHFP----SLPSTL-GDVATVGVLKKLVIFSFRNSHIE-Q  127 (308)
Q Consensus        57 ~~~~L~~L~l~~~~~~~~~~~~~---~~~l~~L~~L~l~~~~~~----~lp~~~-~~~~~l~~l~~L~~L~l~~~~i~-~  127 (308)
                      .+..++.+++++|.+...-...+   ...-.+|++.+++.-...    ++|..+ .-+..+-++++|+..+++.|.+. +
T Consensus        28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~  107 (388)
T COG5238          28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE  107 (388)
T ss_pred             hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence            57788999999998763211111   235677888888765433    233321 00122556889999999999876 4


Q ss_pred             cchh----hhCcCCCCEEecCCCCCCCccCcchh-------------cCCCCCceEEccCCcccccccCCcccchhhhhc
Q 037941          128 LPEE----IGQLTRLKLLDLSTCSKLKSIRPNVI-------------SNLPRLEELYMGNSFTHWEVEGQNNASLAELNQ  190 (308)
Q Consensus       128 l~~~----~~~l~~L~~L~l~~~~~~~~~~~~~~-------------~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~  190 (308)
                      .|..    |+.-+.|.||++++|. +..+..+-+             .+-+.|+++.+..|++.   .|+...+...+.+
T Consensus       108 ~~e~L~d~is~~t~l~HL~l~NnG-lGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRle---ngs~~~~a~~l~s  183 (388)
T COG5238         108 FPEELGDLISSSTDLVHLKLNNNG-LGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLE---NGSKELSAALLES  183 (388)
T ss_pred             cchHHHHHHhcCCCceeEEeecCC-CCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhc---cCcHHHHHHHHHh
Confidence            4433    6677889999999988 655543322             34577888888888776   2222333445666


Q ss_pred             CCCCCEEEeeeccC
Q 037941          191 LSRLTTLEMLILDA  204 (308)
Q Consensus       191 l~~L~~L~l~~~~~  204 (308)
                      ..+|+.+.+.+|.+
T Consensus       184 h~~lk~vki~qNgI  197 (388)
T COG5238         184 HENLKEVKIQQNGI  197 (388)
T ss_pred             hcCceeEEeeecCc
Confidence            67888888888854

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.20  E-value=1.6e-07  Score=69.33  Aligned_cols=112  Identities=16%  Similarity=0.246  Sum_probs=85.8

Q ss_pred             CCCCeeEEeecCCCCCCCCcC----CCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCCCCCCcccccc
Q 037941           36 QKDPIAISHPCRDIQELPEKL----ECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGV  111 (308)
Q Consensus        36 ~~~l~~L~l~~~~~~~~~~~~----~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~~~~l~~  111 (308)
                      -..+..+++++|.+..++...    ...+|+..++++|.+. .+|..+..+++.+..+++++|.++.+|.+      +..
T Consensus        26 akE~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neisdvPeE------~Aa   98 (177)
T KOG4579|consen   26 AKELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEISDVPEE------LAA   98 (177)
T ss_pred             HHHhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhhhchHH------Hhh
Confidence            455667888888776555544    5566777788888776 66777666777888888888888888888      788


Q ss_pred             cccccEEeecCCcCcccchhhhCcCCCCEEecCCCCCCCccCcc
Q 037941          112 LKKLVIFSFRNSHIEQLPEEIGQLTRLKLLDLSTCSKLKSIRPN  155 (308)
Q Consensus       112 l~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~  155 (308)
                      ++.|+.++++.|.+...|..+..+.++-.|+...|. +..+|..
T Consensus        99 m~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~na-~~eid~d  141 (177)
T KOG4579|consen   99 MPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSPENA-RAEIDVD  141 (177)
T ss_pred             hHHhhhcccccCccccchHHHHHHHhHHHhcCCCCc-cccCcHH
Confidence            888888888888888888877778888888888877 6667765

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.19  E-value=9.8e-07  Score=83.97  Aligned_cols=133  Identities=20%  Similarity=0.267  Sum_probs=99.6

Q ss_pred             hcCCCCeeEEeecCCC--CCCCCcC--CCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCCCCCCcccc
Q 037941           34 LMQKDPIAISHPCRDI--QELPEKL--ECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATV  109 (308)
Q Consensus        34 ~~~~~l~~L~l~~~~~--~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~~~~l  109 (308)
                      ....+|++|++++...  ...+...  .+|.|++|.+.+-.+...--...+.++++|..||+++++++.+ .+      +
T Consensus       119 ~sr~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~G------I  191 (699)
T KOG3665|consen  119 ESRQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SG------I  191 (699)
T ss_pred             HHHHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HH------H
Confidence            3467899999988665  4455444  8999999999997765332234557899999999999999988 34      8


Q ss_pred             cccccccEEeecCCcCcccc--hhhhCcCCCCEEecCCCCCCCccCc------chhcCCCCCceEEccCCccc
Q 037941          110 GVLKKLVIFSFRNSHIEQLP--EEIGQLTRLKLLDLSTCSKLKSIRP------NVISNLPRLEELYMGNSFTH  174 (308)
Q Consensus       110 ~~l~~L~~L~l~~~~i~~l~--~~~~~l~~L~~L~l~~~~~~~~~~~------~~~~~l~~L~~L~l~~~~~~  174 (308)
                      +.+++|+.|.+.+=.+..-.  ..+..+++|++||++..... ..+.      +--..+++|+.||.+++.+.
T Consensus       192 S~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~-~~~~ii~qYlec~~~LpeLrfLDcSgTdi~  263 (699)
T KOG3665|consen  192 SRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNN-DDTKIIEQYLECGMVLPELRFLDCSGTDIN  263 (699)
T ss_pred             hccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccc-cchHHHHHHHHhcccCccccEEecCCcchh
Confidence            99999999988776666333  45889999999999986532 2221      00234899999999988776

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.17  E-value=1.1e-05  Score=71.46  Aligned_cols=59  Identities=14%  Similarity=0.272  Sum_probs=27.0

Q ss_pred             CCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCC-CCCCCCCCCCCcccccccccccEEeecCC-cCcccc
Q 037941           58 CPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGF-HFPSLPSTLGDVATVGVLKKLVIFSFRNS-HIEQLP  129 (308)
Q Consensus        58 ~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~-~~~~lp~~~~~~~~l~~l~~L~~L~l~~~-~i~~l~  129 (308)
                      +.+++.|++++|.++ .+|.    --.+|+.|.+++| .+..+|..      +  ..+|++|++++| .+..+|
T Consensus        51 ~~~l~~L~Is~c~L~-sLP~----LP~sLtsL~Lsnc~nLtsLP~~------L--P~nLe~L~Ls~Cs~L~sLP  111 (426)
T PRK15386         51 ARASGRLYIKDCDIE-SLPV----LPNELTEITIENCNNLTTLPGS------I--PEGLEKLTVCHCPEISGLP  111 (426)
T ss_pred             hcCCCEEEeCCCCCc-ccCC----CCCCCcEEEccCCCCcccCCch------h--hhhhhheEccCcccccccc
Confidence            455555665555443 3331    1123555555543 33344443      2  234555555555 344444

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.07  E-value=8.5e-08  Score=82.99  Aligned_cols=250  Identities=18%  Similarity=0.120  Sum_probs=141.3

Q ss_pred             CCCeeEEeecCCC---CCCCCcC-CCCCccEEEecCCCC-cCCCCchhhcCCCCccEEEccCC-CCCC-CCCCCCCcccc
Q 037941           37 KDPIAISHPCRDI---QELPEKL-ECPKLKLFFLFSEKL-SLVIPDLFFEGVPSLQVLSLNGF-HFPS-LPSTLGDVATV  109 (308)
Q Consensus        37 ~~l~~L~l~~~~~---~~~~~~~-~~~~L~~L~l~~~~~-~~~~~~~~~~~l~~L~~L~l~~~-~~~~-lp~~~~~~~~l  109 (308)
                      ..++.|++.++.-   ..+.... .|++++.|.+.++.. +...-..+...+.+|+++++..| .++. .-..+     .
T Consensus       138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~l-----a  212 (483)
T KOG4341|consen  138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYL-----A  212 (483)
T ss_pred             cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHH-----H
Confidence            3456677776654   2233333 788888887777763 32222334456777787777764 3331 11111     3


Q ss_pred             cccccccEEeecCCc-Cc--ccchhhhCcCCCC--------------------------EEecCCCCCCCccCcchh-cC
Q 037941          110 GVLKKLVIFSFRNSH-IE--QLPEEIGQLTRLK--------------------------LLDLSTCSKLKSIRPNVI-SN  159 (308)
Q Consensus       110 ~~l~~L~~L~l~~~~-i~--~l~~~~~~l~~L~--------------------------~L~l~~~~~~~~~~~~~~-~~  159 (308)
                      ..+++|+|+++++|. |+  .+.........++                          .+++..|..++......+ ..
T Consensus       213 ~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~  292 (483)
T KOG4341|consen  213 EGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACG  292 (483)
T ss_pred             HhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhh
Confidence            346777778777764 33  1111122222233                          333334433332221111 12


Q ss_pred             CCCCceEEccCCcccccccCCcccchhhhh-cCCCCCEEEeeecc-Cccccchh---hccCCceeEe------eccCccc
Q 037941          160 LPRLEELYMGNSFTHWEVEGQNNASLAELN-QLSRLTTLEMLILD-AQVMPREL---FSLGLERNKI------FLGDVWS  228 (308)
Q Consensus       160 l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~-~l~~L~~L~l~~~~-~~~~p~~~---~~~~L~~l~i------~~~~~~~  228 (308)
                      +..|++++.+++.-.      ....+.+++ +..+|+.+.++.+. ++..--..   ....|+.+.+      .++.+..
T Consensus       293 c~~lq~l~~s~~t~~------~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~s  366 (483)
T KOG4341|consen  293 CHALQVLCYSSCTDI------TDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLAS  366 (483)
T ss_pred             hhHhhhhcccCCCCC------chHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhh
Confidence            456677777666432      223445554 56789999988875 22211111   1145555543      2223444


Q ss_pred             ccCCCCcCceEEEeecCchhhhhhHHHH------hcccceeecCCccchhhhhhccCCCCCCcccEEeccccccccc
Q 037941          229 WTGKYETSRTLKLKLDNRMYLEHGIKML------LRRTEDLHLDKLNGLQNVLHELDGEGFPRLKHLLVQNASEILY  299 (308)
Q Consensus       229 ~~~~~~~L~~L~L~~~~~~~~~~~~~~~------~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~  299 (308)
                      ....++.|+.+.|+.+..++ ++++..+      ...|+.|.+.+|+.+++..-++ ...+++|+.+++.+|..+..
T Consensus       367 ls~~C~~lr~lslshce~it-D~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~-l~~c~~Leri~l~~~q~vtk  441 (483)
T KOG4341|consen  367 LSRNCPRLRVLSLSHCELIT-DEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEH-LSICRNLERIELIDCQDVTK  441 (483)
T ss_pred             hccCCchhccCChhhhhhhh-hhhhhhhhhccccccccceeeecCCCCchHHHHHH-HhhCcccceeeeechhhhhh
Confidence            56678899999999876665 4444332      4679999999999998876655 47788999999999876543

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.06  E-value=2.2e-05  Score=69.52  Aligned_cols=60  Identities=20%  Similarity=0.373  Sum_probs=31.7

Q ss_pred             CCCccEEEccCCCCCCCCCCCCCcccccccccccEEeecCCc-CcccchhhhCcCCCCEEecCCCCCCCccC
Q 037941           83 VPSLQVLSLNGFHFPSLPSTLGDVATVGVLKKLVIFSFRNSH-IEQLPEEIGQLTRLKLLDLSTCSKLKSIR  153 (308)
Q Consensus        83 l~~L~~L~l~~~~~~~lp~~~~~~~~l~~l~~L~~L~l~~~~-i~~l~~~~~~l~~L~~L~l~~~~~~~~~~  153 (308)
                      +.+++.|++++|.+..+|.       +  ..+|++|.+++|. ++.+|..+  ..+|+.|++++|..+..+|
T Consensus        51 ~~~l~~L~Is~c~L~sLP~-------L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP  111 (426)
T PRK15386         51 ARASGRLYIKDCDIESLPV-------L--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLP  111 (426)
T ss_pred             hcCCCEEEeCCCCCcccCC-------C--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccc
Confidence            4566666666666665553       1  2346666665543 44555433  2356666666654344444

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.97  E-value=3.5e-07  Score=67.50  Aligned_cols=118  Identities=14%  Similarity=0.212  Sum_probs=71.0

Q ss_pred             CccEEEccCCCCCCCCCCCCCcccccccccccEEeecCCcCcccchhhhC-cCCCCEEecCCCCCCCccCcchhcCCCCC
Q 037941           85 SLQVLSLNGFHFPSLPSTLGDVATVGVLKKLVIFSFRNSHIEQLPEEIGQ-LTRLKLLDLSTCSKLKSIRPNVISNLPRL  163 (308)
Q Consensus        85 ~L~~L~l~~~~~~~lp~~~~~~~~l~~l~~L~~L~l~~~~i~~l~~~~~~-l~~L~~L~l~~~~~~~~~~~~~~~~l~~L  163 (308)
                      .+..++|+.|.+..+++....   +.....|...++++|.++++|+.+.. .+-++.+++.+|. +.++|.+ +..++.|
T Consensus        28 E~h~ldLssc~lm~i~davy~---l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~ne-isdvPeE-~Aam~aL  102 (177)
T KOG4579|consen   28 ELHFLDLSSCQLMYIADAVYM---LSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNE-ISDVPEE-LAAMPAL  102 (177)
T ss_pred             HhhhcccccchhhHHHHHHHH---HhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhh-hhhchHH-HhhhHHh
Confidence            344556666665544443100   23344455556777777767655543 3466777777776 6677776 6777777


Q ss_pred             ceEEccCCcccccccCCcccchhhhhcCCCCCEEEeeeccCccccchhhccC
Q 037941          164 EELYMGNSFTHWEVEGQNNASLAELNQLSRLTTLEMLILDAQVMPRELFSLG  215 (308)
Q Consensus       164 ~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~~~~~~  215 (308)
                      +.|+++.|.+.        ..+.-+..+.++..|+...|...++|-..+.++
T Consensus       103 r~lNl~~N~l~--------~~p~vi~~L~~l~~Lds~~na~~eid~dl~~s~  146 (177)
T KOG4579|consen  103 RSLNLRFNPLN--------AEPRVIAPLIKLDMLDSPENARAEIDVDLFYSS  146 (177)
T ss_pred             hhcccccCccc--------cchHHHHHHHhHHHhcCCCCccccCcHHHhccc
Confidence            77777777666        334455556677777777776666666644433

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.93  E-value=1.3e-07  Score=87.15  Aligned_cols=128  Identities=22%  Similarity=0.215  Sum_probs=99.1

Q ss_pred             CCCCeeEEeecCCCCCCCCcC-CCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCCCCCCccccccccc
Q 037941           36 QKDPIAISHPCRDIQELPEKL-ECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKK  114 (308)
Q Consensus        36 ~~~l~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~~~~l~~l~~  114 (308)
                      +-.|...+.++|.+..+.... -++.+++|++++|.++. ..  ++..+++|+.||+++|.+..+|.--     ... .+
T Consensus       163 Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~-v~--~Lr~l~~LkhLDlsyN~L~~vp~l~-----~~g-c~  233 (1096)
T KOG1859|consen  163 WNKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTK-VD--NLRRLPKLKHLDLSYNCLRHVPQLS-----MVG-CK  233 (1096)
T ss_pred             hhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhh-hH--HHHhcccccccccccchhccccccc-----hhh-hh
Confidence            456677788888877776666 78899999999999873 22  4578999999999999999888731     223 34


Q ss_pred             ccEEeecCCcCcccchhhhCcCCCCEEecCCCCCCCccCc-chhcCCCCCceEEccCCccc
Q 037941          115 LVIFSFRNSHIEQLPEEIGQLTRLKLLDLSTCSKLKSIRP-NVISNLPRLEELYMGNSFTH  174 (308)
Q Consensus       115 L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~  174 (308)
                      |+.|.+++|.++.+-. +.++.+|+.|++++|- +..+.. ..++.+..|+.|.+.+|.+-
T Consensus       234 L~~L~lrnN~l~tL~g-ie~LksL~~LDlsyNl-l~~hseL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  234 LQLLNLRNNALTTLRG-IENLKSLYGLDLSYNL-LSEHSELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             heeeeecccHHHhhhh-HHhhhhhhccchhHhh-hhcchhhhHHHHHHHHHHHhhcCCccc
Confidence            9999999999888877 8899999999999986 333222 22566788999999998766

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.89  E-value=2.6e-05  Score=61.60  Aligned_cols=105  Identities=20%  Similarity=0.296  Sum_probs=49.5

Q ss_pred             CCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCCCCCCcccccccccccEEeecCCcCcccch--hhhCc
Q 037941           58 CPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKKLVIFSFRNSHIEQLPE--EIGQL  135 (308)
Q Consensus        58 ~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~~~~l~~l~~L~~L~l~~~~i~~l~~--~~~~l  135 (308)
                      ..+...++++.|.+. .++.  |.+++.|..|.+.+|++..+-+.+     -.-+++|+.|.+.+|.+.++..  .+-.+
T Consensus        41 ~d~~d~iDLtdNdl~-~l~~--lp~l~rL~tLll~nNrIt~I~p~L-----~~~~p~l~~L~LtnNsi~~l~dl~pLa~~  112 (233)
T KOG1644|consen   41 LDQFDAIDLTDNDLR-KLDN--LPHLPRLHTLLLNNNRITRIDPDL-----DTFLPNLKTLILTNNSIQELGDLDPLASC  112 (233)
T ss_pred             ccccceecccccchh-hccc--CCCccccceEEecCCcceeeccch-----hhhccccceEEecCcchhhhhhcchhccC
Confidence            344445555555543 1111  345555555555555555554442     2223445555555555553332  13344


Q ss_pred             CCCCEEecCCCCCCCccC---cchhcCCCCCceEEccCC
Q 037941          136 TRLKLLDLSTCSKLKSIR---PNVISNLPRLEELYMGNS  171 (308)
Q Consensus       136 ~~L~~L~l~~~~~~~~~~---~~~~~~l~~L~~L~l~~~  171 (308)
                      ++|+.|.+-+|+ .+.-.   .-++..+++|+.||+..-
T Consensus       113 p~L~~Ltll~Np-v~~k~~YR~yvl~klp~l~~LDF~kV  150 (233)
T KOG1644|consen  113 PKLEYLTLLGNP-VEHKKNYRLYVLYKLPSLRTLDFQKV  150 (233)
T ss_pred             CccceeeecCCc-hhcccCceeEEEEecCcceEeehhhh
Confidence            555555555544 22111   112455666666666543

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.88  E-value=1.2e-05  Score=66.35  Aligned_cols=167  Identities=16%  Similarity=0.177  Sum_probs=101.4

Q ss_pred             hcCCCCeeEEeecCCCC-----CCCCcC-CCCCccEEEecCCCCc---CCCCch------hhcCCCCccEEEccCCCCC-
Q 037941           34 LMQKDPIAISHPCRDIQ-----ELPEKL-ECPKLKLFFLFSEKLS---LVIPDL------FFEGVPSLQVLSLNGFHFP-   97 (308)
Q Consensus        34 ~~~~~l~~L~l~~~~~~-----~~~~~~-~~~~L~~L~l~~~~~~---~~~~~~------~~~~l~~L~~L~l~~~~~~-   97 (308)
                      .+...+..+++++|.+.     .+...+ +-++|+..+++.-...   ..+++.      .+-++++|+..+|+.|-|. 
T Consensus        27 ~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~  106 (388)
T COG5238          27 EMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGS  106 (388)
T ss_pred             HhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCc
Confidence            45778888999988882     122222 5667777777653211   122211      1247888999999998887 


Q ss_pred             CCCCCCCCcccccccccccEEeecCCcCcccch-hh-------------hCcCCCCEEecCCCCCCCccCcch----hcC
Q 037941           98 SLPSTLGDVATVGVLKKLVIFSFRNSHIEQLPE-EI-------------GQLTRLKLLDLSTCSKLKSIRPNV----ISN  159 (308)
Q Consensus        98 ~lp~~~~~~~~l~~l~~L~~L~l~~~~i~~l~~-~~-------------~~l~~L~~L~l~~~~~~~~~~~~~----~~~  159 (308)
                      +.|..+++  .+.+-..|.+|.+++|++..+.. .|             ..-+.|+......|. +...+...    +..
T Consensus       107 ~~~e~L~d--~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNR-lengs~~~~a~~l~s  183 (388)
T COG5238         107 EFPEELGD--LISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNR-LENGSKELSAALLES  183 (388)
T ss_pred             ccchHHHH--HHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccch-hccCcHHHHHHHHHh
Confidence            55554211  14556778888898887663321 12             245778888887777 65555421    233


Q ss_pred             CCCCceEEccCCcccccccCCcccchhhhhcCCCCCEEEeeeccCc
Q 037941          160 LPRLEELYMGNSFTHWEVEGQNNASLAELNQLSRLTTLEMLILDAQ  205 (308)
Q Consensus       160 l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  205 (308)
                      -.+|+++.+..|.|+..  |...-....+..+.+|+.|++.+|-++
T Consensus       184 h~~lk~vki~qNgIrpe--gv~~L~~~gl~y~~~LevLDlqDNtft  227 (388)
T COG5238         184 HENLKEVKIQQNGIRPE--GVTMLAFLGLFYSHSLEVLDLQDNTFT  227 (388)
T ss_pred             hcCceeEEeeecCcCcc--hhHHHHHHHHHHhCcceeeeccccchh
Confidence            36788888888877711  100111134456778888888888643

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.82  E-value=3.2e-05  Score=64.71  Aligned_cols=62  Identities=19%  Similarity=0.201  Sum_probs=31.9

Q ss_pred             cCCCCEEecCCCCCCCccCc-chhcCCCCCceEEccCCcccccccCCcccchhhhhcCCCCCEEEeeecc
Q 037941          135 LTRLKLLDLSTCSKLKSIRP-NVISNLPRLEELYMGNSFTHWEVEGQNNASLAELNQLSRLTTLEMLILD  203 (308)
Q Consensus       135 l~~L~~L~l~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  203 (308)
                      ++++..+.+..|. ++.... .-....+.+-.|+++.+.+.      ....+.++..++.|+.|.+..+.
T Consensus       198 Fpnv~sv~v~e~P-lK~~s~ek~se~~p~~~~LnL~~~~id------swasvD~Ln~f~~l~dlRv~~~P  260 (418)
T KOG2982|consen  198 FPNVNSVFVCEGP-LKTESSEKGSEPFPSLSCLNLGANNID------SWASVDALNGFPQLVDLRVSENP  260 (418)
T ss_pred             cccchheeeecCc-ccchhhcccCCCCCcchhhhhcccccc------cHHHHHHHcCCchhheeeccCCc
Confidence            3455555555554 221111 11223444445566655554      23345677777777777776665

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.78  E-value=6.3e-05  Score=59.46  Aligned_cols=108  Identities=19%  Similarity=0.300  Sum_probs=59.7

Q ss_pred             CCCccEEEccCCCCCCCCCCCCCcccccccccccEEeecCCcCcccchhhhCc-CCCCEEecCCCCCCCccCc-chhcCC
Q 037941           83 VPSLQVLSLNGFHFPSLPSTLGDVATVGVLKKLVIFSFRNSHIEQLPEEIGQL-TRLKLLDLSTCSKLKSIRP-NVISNL  160 (308)
Q Consensus        83 l~~L~~L~l~~~~~~~lp~~~~~~~~l~~l~~L~~L~l~~~~i~~l~~~~~~l-~~L~~L~l~~~~~~~~~~~-~~~~~l  160 (308)
                      +.+...+||++|.+..++.       +..++.|.+|.+..|.|+.+.+.+..+ ++|+.|.+.+|+ +.++.. .-+..+
T Consensus        41 ~d~~d~iDLtdNdl~~l~~-------lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNs-i~~l~dl~pLa~~  112 (233)
T KOG1644|consen   41 LDQFDAIDLTDNDLRKLDN-------LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNS-IQELGDLDPLASC  112 (233)
T ss_pred             ccccceecccccchhhccc-------CCCccccceEEecCCcceeeccchhhhccccceEEecCcc-hhhhhhcchhccC
Confidence            3445566677666665555       555666777777777777666555543 557777776665 332221 114556


Q ss_pred             CCCceEEccCCcccccccCCcccchhhhhcCCCCCEEEeeec
Q 037941          161 PRLEELYMGNSFTHWEVEGQNNASLAELNQLSRLTTLEMLIL  202 (308)
Q Consensus       161 ~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~  202 (308)
                      +.|+.|-+-+|.+.....    =-.-.+..+++|+.||+..-
T Consensus       113 p~L~~Ltll~Npv~~k~~----YR~yvl~klp~l~~LDF~kV  150 (233)
T KOG1644|consen  113 PKLEYLTLLGNPVEHKKN----YRLYVLYKLPSLRTLDFQKV  150 (233)
T ss_pred             CccceeeecCCchhcccC----ceeEEEEecCcceEeehhhh
Confidence            666666666665541100    00013445666777766543

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.37  E-value=1.7e-05  Score=65.68  Aligned_cols=100  Identities=26%  Similarity=0.253  Sum_probs=70.8

Q ss_pred             CCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCCCCCCcccccccccccEEeecCCcCcccchh--hhCc
Q 037941           58 CPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKKLVIFSFRNSHIEQLPEE--IGQL  135 (308)
Q Consensus        58 ~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~~~~l~~l~~L~~L~l~~~~i~~l~~~--~~~l  135 (308)
                      +.+.+.|++.+|.+..   ..++.+|+.|+||.|+.|.++.+-+       +..+.+|++|.+..|.|.++.+-  +.++
T Consensus        18 l~~vkKLNcwg~~L~D---Isic~kMp~lEVLsLSvNkIssL~p-------l~rCtrLkElYLRkN~I~sldEL~YLknl   87 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDD---ISICEKMPLLEVLSLSVNKISSLAP-------LQRCTRLKELYLRKNCIESLDELEYLKNL   87 (388)
T ss_pred             HHHhhhhcccCCCccH---HHHHHhcccceeEEeeccccccchh-------HHHHHHHHHHHHHhcccccHHHHHHHhcC
Confidence            4456666777776552   2445688888888888888887766       77888888888888888866643  5677


Q ss_pred             CCCCEEecCCCCCCCccCc----chhcCCCCCceEE
Q 037941          136 TRLKLLDLSTCSKLKSIRP----NVISNLPRLEELY  167 (308)
Q Consensus       136 ~~L~~L~l~~~~~~~~~~~----~~~~~l~~L~~L~  167 (308)
                      ++|+.|.+..|...+.-+.    ..+.-+++|+.||
T Consensus        88 psLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   88 PSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             chhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence            8888888887775544443    2355577777775

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.21  E-value=0.00023  Score=58.50  Aligned_cols=86  Identities=26%  Similarity=0.390  Sum_probs=42.3

Q ss_pred             CCCcC-CCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCC--CCC-CCCCCCCCcccccccccccEEeecCCcCcc
Q 037941           52 LPEKL-ECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGF--HFP-SLPSTLGDVATVGVLKKLVIFSFRNSHIEQ  127 (308)
Q Consensus        52 ~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~--~~~-~lp~~~~~~~~l~~l~~L~~L~l~~~~i~~  127 (308)
                      +.+.. .+..|+.+.+.+..++. +..  |..|++|+.|.++.|  ++. .++.-      ..++++|+++++++|+++.
T Consensus        35 ~~gl~d~~~~le~ls~~n~gltt-~~~--~P~Lp~LkkL~lsdn~~~~~~~l~vl------~e~~P~l~~l~ls~Nki~~  105 (260)
T KOG2739|consen   35 LGGLTDEFVELELLSVINVGLTT-LTN--FPKLPKLKKLELSDNYRRVSGGLEVL------AEKAPNLKVLNLSGNKIKD  105 (260)
T ss_pred             cccccccccchhhhhhhccceee-ccc--CCCcchhhhhcccCCcccccccceeh------hhhCCceeEEeecCCcccc
Confidence            33333 55555655555554441 111  235666666666666  332 33332      3344666666666665552


Q ss_pred             ---cchhhhCcCCCCEEecCCCC
Q 037941          128 ---LPEEIGQLTRLKLLDLSTCS  147 (308)
Q Consensus       128 ---l~~~~~~l~~L~~L~l~~~~  147 (308)
                         ++. +..+.+|..|++.+|.
T Consensus       106 lstl~p-l~~l~nL~~Ldl~n~~  127 (260)
T KOG2739|consen  106 LSTLRP-LKELENLKSLDLFNCS  127 (260)
T ss_pred             ccccch-hhhhcchhhhhcccCC
Confidence               222 3444555555555554

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.05  E-value=0.00045  Score=56.82  Aligned_cols=105  Identities=25%  Similarity=0.231  Sum_probs=78.4

Q ss_pred             cCCCCeeEEeecCCCCCCCCcCCCCCccEEEecCC--CCcCCCCchhhcCCCCccEEEccCCCCC---CCCCCCCCcccc
Q 037941           35 MQKDPIAISHPCRDIQELPEKLECPKLKLFFLFSE--KLSLVIPDLFFEGVPSLQVLSLNGFHFP---SLPSTLGDVATV  109 (308)
Q Consensus        35 ~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~--~~~~~~~~~~~~~l~~L~~L~l~~~~~~---~lp~~~~~~~~l  109 (308)
                      ....++.+++.+..+..+-....+++|+.|.++.|  .+.+.++... ..+++|++|.++.|.+.   ++++       +
T Consensus        41 ~~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~-e~~P~l~~l~ls~Nki~~lstl~p-------l  112 (260)
T KOG2739|consen   41 EFVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLA-EKAPNLKVLNLSGNKIKDLSTLRP-------L  112 (260)
T ss_pred             cccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehh-hhCCceeEEeecCCccccccccch-------h
Confidence            35677788888888766665558999999999999  5555555544 46799999999999876   4555       7


Q ss_pred             cccccccEEeecCCcCcccc----hhhhCcCCCCEEecCCCC
Q 037941          110 GVLKKLVIFSFRNSHIEQLP----EEIGQLTRLKLLDLSTCS  147 (308)
Q Consensus       110 ~~l~~L~~L~l~~~~i~~l~----~~~~~l~~L~~L~l~~~~  147 (308)
                      ..+.+|..|++..|..+.+-    ..+.-+++|.+|+-....
T Consensus       113 ~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~  154 (260)
T KOG2739|consen  113 KELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDVD  154 (260)
T ss_pred             hhhcchhhhhcccCCccccccHHHHHHHHhhhhccccccccC
Confidence            78899999999998876432    224456788888766554

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=96.89  E-value=0.004  Score=46.33  Aligned_cols=102  Identities=20%  Similarity=0.334  Sum_probs=42.7

Q ss_pred             CCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCCCCCCcccccccccccEEeecCCcCcccch-hhhCc
Q 037941           57 ECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKKLVIFSFRNSHIEQLPE-EIGQL  135 (308)
Q Consensus        57 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~~~~l~~l~~L~~L~l~~~~i~~l~~-~~~~l  135 (308)
                      .+.+|+.+.+.. .+. .++...|.++.+|+.+.+..+ +..++...     +..+..++++.+.. .+..++. .+..+
T Consensus        10 ~~~~l~~i~~~~-~~~-~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~-----F~~~~~l~~i~~~~-~~~~i~~~~F~~~   80 (129)
T PF13306_consen   10 NCSNLESITFPN-TIK-KIGENAFSNCTSLKSINFPNN-LTSIGDNA-----FSNCKSLESITFPN-NLKSIGDNAFSNC   80 (129)
T ss_dssp             T-TT--EEEETS-T---EE-TTTTTT-TT-SEEEESST-TSCE-TTT-----TTT-TT-EEEEETS-TT-EE-TTTTTT-
T ss_pred             CCCCCCEEEECC-Cee-EeChhhccccccccccccccc-ccccceee-----eecccccccccccc-ccccccccccccc
Confidence            455556555553 222 344444555556666666553 55555543     55555566666644 3333332 24445


Q ss_pred             CCCCEEecCCCCCCCccCcchhcCCCCCceEEccC
Q 037941          136 TRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGN  170 (308)
Q Consensus       136 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~  170 (308)
                      ++|+.+.+..+  +..++...+.++ +|+.+.+..
T Consensus        81 ~~l~~i~~~~~--~~~i~~~~f~~~-~l~~i~~~~  112 (129)
T PF13306_consen   81 TNLKNIDIPSN--ITEIGSSSFSNC-NLKEINIPS  112 (129)
T ss_dssp             TTECEEEETTT---BEEHTTTTTT--T--EEE-TT
T ss_pred             ccccccccCcc--ccEEchhhhcCC-CceEEEECC
Confidence            66666666442  344444445555 666665543

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.85  E-value=8.3e-05  Score=61.68  Aligned_cols=76  Identities=17%  Similarity=0.122  Sum_probs=60.3

Q ss_pred             eecccchhhHhhhhcCCCCeeEEeecCCCCCCCCcCCCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCC
Q 037941           21 IQIISDLREVFEDLMQKDPIAISHPCRDIQELPEKLECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHF   96 (308)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~   96 (308)
                      -++|.++.+|.-...++.+++|.|+-|++..+.+...|++|++|++..|.+...-.-..+.++++|+.|-|..|..
T Consensus        25 Ncwg~~L~DIsic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPC  100 (388)
T KOG2123|consen   25 NCWGCGLDDISICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPC  100 (388)
T ss_pred             cccCCCccHHHHHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCc
Confidence            3558888888877889999999999999998888889999999999999886432334456788888888877654

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=96.81  E-value=0.0049  Score=45.86  Aligned_cols=113  Identities=19%  Similarity=0.326  Sum_probs=35.4

Q ss_pred             CCeeEEeecCCCCCCCCcC--CCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCCCCCCcccccccccc
Q 037941           38 DPIAISHPCRDIQELPEKL--ECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKKL  115 (308)
Q Consensus        38 ~l~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~~~~l~~l~~L  115 (308)
                      +++.+.+.. .+..++...  .+++++.+.+..+ +. .++...|.++..++.+.+.. .+..++...     +..+.+|
T Consensus        13 ~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~-----F~~~~~l   83 (129)
T PF13306_consen   13 NLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LT-SIGDNAFSNCKSLESITFPN-NLKSIGDNA-----FSNCTNL   83 (129)
T ss_dssp             T--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TS-CE-TTTTTT-TT-EEEEETS-TT-EE-TTT-----TTT-TTE
T ss_pred             CCCEEEECC-CeeEeChhhccccccccccccccc-cc-ccceeeeecccccccccccc-ccccccccc-----ccccccc
Confidence            344444432 333343333  4445555555443 22 33333344444555555533 333333332     4445555


Q ss_pred             cEEeecCCcCcccchh-hhCcCCCCEEecCCCCCCCccCcchhcCCCCC
Q 037941          116 VIFSFRNSHIEQLPEE-IGQLTRLKLLDLSTCSKLKSIRPNVISNLPRL  163 (308)
Q Consensus       116 ~~L~l~~~~i~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L  163 (308)
                      +++.+..+ +..++.. +... +|+.+.+..+  +..++...+.++++|
T Consensus        84 ~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~~--~~~i~~~~F~~~~~l  128 (129)
T PF13306_consen   84 KNIDIPSN-ITEIGSSSFSNC-NLKEINIPSN--ITKIEENAFKNCTKL  128 (129)
T ss_dssp             CEEEETTT--BEEHTTTTTT--T--EEE-TTB---SS----GGG-----
T ss_pred             cccccCcc-ccEEchhhhcCC-CceEEEECCC--ccEECCccccccccC
Confidence            55555433 3333322 3333 4555544431  333444444444443

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=96.72  E-value=7.2e-05  Score=65.30  Aligned_cols=231  Identities=16%  Similarity=0.136  Sum_probs=118.2

Q ss_pred             CCccEEEecCCCCcCCCC-chhhcCCCCccEEEccCCCCCCCCCCCCCcccccccccccEEeecCCc-Cc--ccchhhhC
Q 037941           59 PKLKLFFLFSEKLSLVIP-DLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKKLVIFSFRNSH-IE--QLPEEIGQ  134 (308)
Q Consensus        59 ~~L~~L~l~~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~lp~~~~~~~~l~~l~~L~~L~l~~~~-i~--~l~~~~~~  134 (308)
                      ..|+.|.+.++.-.+.-+ -.+....++++.|.+.++.  .+.+.. -.+.-..+++|+++++..|. ++  .+-.....
T Consensus       138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~--~iTd~s-~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~g  214 (483)
T KOG4341|consen  138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCK--KITDSS-LLSLARYCRKLRHLNLHSCSSITDVSLKYLAEG  214 (483)
T ss_pred             cccccccccccccCCcchhhHHhhhCCchhhhhhhcce--eccHHH-HHHHHHhcchhhhhhhcccchhHHHHHHHHHHh
Confidence            356777777665332111 2333566777777666654  111110 00002235677777777643 55  22223445


Q ss_pred             cCCCCEEecCCCCCCCccCc-chhcCCCCCceEEccCCcccccccCCcccchh-hhhcCCCCCEEEeeecc-Cccccchh
Q 037941          135 LTRLKLLDLSTCSKLKSIRP-NVISNLPRLEELYMGNSFTHWEVEGQNNASLA-ELNQLSRLTTLEMLILD-AQVMPREL  211 (308)
Q Consensus       135 l~~L~~L~l~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~-~~~~p~~~  211 (308)
                      +++|+++++++|..++.-.. .....+..++.+...+|.=.      ..+.+. .-+.+..+-++++..+. ++...-+.
T Consensus       215 C~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~------~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~  288 (483)
T KOG4341|consen  215 CRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLEL------ELEALLKAAAYCLEILKLNLQHCNQLTDEDLWL  288 (483)
T ss_pred             hhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccc------cHHHHHHHhccChHhhccchhhhccccchHHHH
Confidence            67777777777764443111 11233444555544444211      011111 11234445555544442 33222221


Q ss_pred             hc---cCCceeEeeccC------cccccCCCCcCceEEEeecCchhhhhhHH---HHhcccceeecCCccchhhhhhccC
Q 037941          212 FS---LGLERNKIFLGD------VWSWTGKYETSRTLKLKLDNRMYLEHGIK---MLLRRTEDLHLDKLNGLQNVLHELD  279 (308)
Q Consensus       212 ~~---~~L~~l~i~~~~------~~~~~~~~~~L~~L~L~~~~~~~~~~~~~---~~~~~L~~L~l~~~~~~~~~~~~~~  279 (308)
                      ..   ..|+.+......      ++......++|+.+.+..++..+ +.+..   .-.+.|+.+.+.+|..+.+..-.-.
T Consensus       289 i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fs-d~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sl  367 (483)
T KOG4341|consen  289 IACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFS-DRGFTMLGRNCPHLERLDLEECGLITDGTLASL  367 (483)
T ss_pred             HhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhh-hhhhhhhhcCChhhhhhcccccceehhhhHhhh
Confidence            11   455665543222      22235567889999888876544 33322   2247889999988766555422223


Q ss_pred             CCCCCcccEEeccccccccc
Q 037941          280 GEGFPRLKHLLVQNASEILY  299 (308)
Q Consensus       280 ~~~~~~L~~L~l~~c~~l~~  299 (308)
                      ...+|.|++|.+++|..+..
T Consensus       368 s~~C~~lr~lslshce~itD  387 (483)
T KOG4341|consen  368 SRNCPRLRVLSLSHCELITD  387 (483)
T ss_pred             ccCCchhccCChhhhhhhhh
Confidence            46789999999999966543

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.40  E-value=0.0016  Score=32.25  Aligned_cols=18  Identities=11%  Similarity=0.425  Sum_probs=9.6

Q ss_pred             ccEEeecCCcCcccchhh
Q 037941          115 LVIFSFRNSHIEQLPEEI  132 (308)
Q Consensus       115 L~~L~l~~~~i~~l~~~~  132 (308)
                      |++|++++|.++.+|..+
T Consensus         2 L~~Ldls~n~l~~ip~~~   19 (22)
T PF00560_consen    2 LEYLDLSGNNLTSIPSSF   19 (22)
T ss_dssp             ESEEEETSSEESEEGTTT
T ss_pred             ccEEECCCCcCEeCChhh
Confidence            455555555555555443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.35  E-value=0.00085  Score=61.88  Aligned_cols=113  Identities=23%  Similarity=0.301  Sum_probs=60.8

Q ss_pred             CCCCccEEEecCCCCcCCC-CchhhcCCCCccEEEccCC-C-CCCCC---CCCCCcccccccccccEEeecCCc-Cccc-
Q 037941           57 ECPKLKLFFLFSEKLSLVI-PDLFFEGVPSLQVLSLNGF-H-FPSLP---STLGDVATVGVLKKLVIFSFRNSH-IEQL-  128 (308)
Q Consensus        57 ~~~~L~~L~l~~~~~~~~~-~~~~~~~l~~L~~L~l~~~-~-~~~lp---~~~~~~~~l~~l~~L~~L~l~~~~-i~~l-  128 (308)
                      .+++++.+.+.++...... -..+....+.|+.|+++++ . ....+   ..+     ...+.+|+.|+++++. +++. 
T Consensus       186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-----~~~~~~L~~l~l~~~~~isd~~  260 (482)
T KOG1947|consen  186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLL-----LSICRKLKSLDLSGCGLVTDIG  260 (482)
T ss_pred             hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhh-----hhhcCCcCccchhhhhccCchh
Confidence            4667777777766432221 1233456777777777763 1 11111   111     3445777777777776 5522 


Q ss_pred             -chhhhCcCCCCEEecCCCCCCCccCc-chhcCCCCCceEEccCCccc
Q 037941          129 -PEEIGQLTRLKLLDLSTCSKLKSIRP-NVISNLPRLEELYMGNSFTH  174 (308)
Q Consensus       129 -~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~  174 (308)
                       ......+++|+.|.+.+|..++...- .+...+++|++|++++|...
T Consensus       261 l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~  308 (482)
T KOG1947|consen  261 LSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL  308 (482)
T ss_pred             HHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence             22223367777777776663322221 12345667777777776543

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.45  E-value=0.004  Score=30.76  Aligned_cols=17  Identities=41%  Similarity=0.727  Sum_probs=10.4

Q ss_pred             ccEEEccCCCCCCCCCC
Q 037941           86 LQVLSLNGFHFPSLPST  102 (308)
Q Consensus        86 L~~L~l~~~~~~~lp~~  102 (308)
                      |++|++++|.++.+|++
T Consensus         2 L~~Ldls~n~l~~ip~~   18 (22)
T PF00560_consen    2 LEYLDLSGNNLTSIPSS   18 (22)
T ss_dssp             ESEEEETSSEESEEGTT
T ss_pred             ccEEECCCCcCEeCChh
Confidence            56666666666666655

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=95.34  E-value=0.0082  Score=55.32  Aligned_cols=14  Identities=21%  Similarity=0.190  Sum_probs=6.5

Q ss_pred             CCCcCceEEEeecC
Q 037941          232 KYETSRTLKLKLDN  245 (308)
Q Consensus       232 ~~~~L~~L~L~~~~  245 (308)
                      .++.|+.|+|+.+.
T Consensus       293 ~~~~L~~L~l~~c~  306 (482)
T KOG1947|consen  293 RCPSLRELDLSGCH  306 (482)
T ss_pred             hcCcccEEeeecCc
Confidence            34445555554443

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=95.05  E-value=0.016  Score=26.56  Aligned_cols=11  Identities=18%  Similarity=0.419  Sum_probs=3.1

Q ss_pred             ccEEeecCCcC
Q 037941          115 LVIFSFRNSHI  125 (308)
Q Consensus       115 L~~L~l~~~~i  125 (308)
                      |+.|++++|.+
T Consensus         3 L~~L~l~~n~L   13 (17)
T PF13504_consen    3 LRTLDLSNNRL   13 (17)
T ss_dssp             -SEEEETSS--
T ss_pred             cCEEECCCCCC
Confidence            33333333333

...

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=94.87  E-value=0.017  Score=26.52  Aligned_cols=16  Identities=38%  Similarity=0.617  Sum_probs=8.0

Q ss_pred             CccEEEccCCCCCCCC
Q 037941           85 SLQVLSLNGFHFPSLP  100 (308)
Q Consensus        85 ~L~~L~l~~~~~~~lp  100 (308)
                      +|++|++++|.+.++|
T Consensus         2 ~L~~L~l~~n~L~~lP   17 (17)
T PF13504_consen    2 NLRTLDLSNNRLTSLP   17 (17)
T ss_dssp             T-SEEEETSS--SSE-
T ss_pred             ccCEEECCCCCCCCCc
Confidence            5667777777766554

...

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.83  E-value=0.011  Score=46.98  Aligned_cols=41  Identities=27%  Similarity=0.301  Sum_probs=23.6

Q ss_pred             CCCcCceEEEeecCchhhhhhHHHH--hcccceeecCCccchhh
Q 037941          232 KYETSRTLKLKLDNRMYLEHGIKML--LRRTEDLHLDKLNGLQN  273 (308)
Q Consensus       232 ~~~~L~~L~L~~~~~~~~~~~~~~~--~~~L~~L~l~~~~~~~~  273 (308)
                      ..++|+.|+|++|..++ +.++.++  |++|+.|.+++++.+..
T Consensus       149 ~~~~L~~L~lsgC~rIT-~~GL~~L~~lknLr~L~l~~l~~v~~  191 (221)
T KOG3864|consen  149 LAPSLQDLDLSGCPRIT-DGGLACLLKLKNLRRLHLYDLPYVAN  191 (221)
T ss_pred             cccchheeeccCCCeec-hhHHHHHHHhhhhHHHHhcCchhhhc
Confidence            45677777777776665 2232222  46677777766654443

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.93  E-value=0.18  Score=40.36  Aligned_cols=69  Identities=12%  Similarity=0.002  Sum_probs=48.1

Q ss_pred             cCCCCcCceEEEeecCchhh--hhhHHHHhcccceeecCCccchhhhhhccCCCCCCcccEEeccccccccc
Q 037941          230 TGKYETSRTLKLKLDNRMYL--EHGIKMLLRRTEDLHLDKLNGLQNVLHELDGEGFPRLKHLLVQNASEILY  299 (308)
Q Consensus       230 ~~~~~~L~~L~L~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~  299 (308)
                      ...++.++.|.+..+.....  .+.+...+++|+.|+|++|+.+++-+... ...|++|+.|.+.+.+.+..
T Consensus       121 L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~-L~~lknLr~L~l~~l~~v~~  191 (221)
T KOG3864|consen  121 LRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLAC-LLKLKNLRRLHLYDLPYVAN  191 (221)
T ss_pred             HhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHH-HHHhhhhHHHHhcCchhhhc
Confidence            45566666677766655442  33344467999999999999998865433 35688999999988766543

>smart00370 LRR Leucine-rich repeats, outliers

Probab=92.44  E-value=0.12  Score=26.44  Aligned_cols=15  Identities=27%  Similarity=0.541  Sum_probs=5.8

Q ss_pred             ccEEeecCCcCcccc
Q 037941          115 LVIFSFRNSHIEQLP  129 (308)
Q Consensus       115 L~~L~l~~~~i~~l~  129 (308)
                      |++|++++|.++.+|
T Consensus         4 L~~L~L~~N~l~~lp   18 (26)
T smart00370        4 LRELDLSNNQLSSLP   18 (26)
T ss_pred             CCEEECCCCcCCcCC
Confidence            333333333333333

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=92.44  E-value=0.12  Score=26.44  Aligned_cols=15  Identities=27%  Similarity=0.541  Sum_probs=5.8

Q ss_pred             ccEEeecCCcCcccc
Q 037941          115 LVIFSFRNSHIEQLP  129 (308)
Q Consensus       115 L~~L~l~~~~i~~l~  129 (308)
                      |++|++++|.++.+|
T Consensus         4 L~~L~L~~N~l~~lp   18 (26)
T smart00369        4 LRELDLSNNQLSSLP   18 (26)
T ss_pred             CCEEECCCCcCCcCC
Confidence            333333333333333

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=91.89  E-value=0.13  Score=26.29  Aligned_cols=20  Identities=35%  Similarity=0.622  Sum_probs=17.3

Q ss_pred             CCCccEEEccCCCCCCCCCC
Q 037941           83 VPSLQVLSLNGFHFPSLPST  102 (308)
Q Consensus        83 l~~L~~L~l~~~~~~~lp~~  102 (308)
                      +++|++|++++|.+..+|.+
T Consensus         1 L~~L~~L~L~~N~l~~lp~~   20 (26)
T smart00369        1 LPNLRELDLSNNQLSSLPPG   20 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHH
Confidence            46789999999999999886

>smart00370 LRR Leucine-rich repeats, outliers

Probab=91.89  E-value=0.13  Score=26.29  Aligned_cols=20  Identities=35%  Similarity=0.622  Sum_probs=17.3

Q ss_pred             CCCccEEEccCCCCCCCCCC
Q 037941           83 VPSLQVLSLNGFHFPSLPST  102 (308)
Q Consensus        83 l~~L~~L~l~~~~~~~lp~~  102 (308)
                      +++|++|++++|.+..+|.+
T Consensus         1 L~~L~~L~L~~N~l~~lp~~   20 (26)
T smart00370        1 LPNLRELDLSNNQLSSLPPG   20 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHH
Confidence            46789999999999999886

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=89.04  E-value=0.019  Score=46.80  Aligned_cols=83  Identities=16%  Similarity=0.118  Sum_probs=56.0

Q ss_pred             CCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCCCCCCcccccccccccEEeecCCcCcccchhhhCcC
Q 037941           57 ECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKKLVIFSFRNSHIEQLPEEIGQLT  136 (308)
Q Consensus        57 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~~~~l~~l~~L~~L~l~~~~i~~l~~~~~~l~  136 (308)
                      .....+.|+++.|+... +... |+.+..+..|+++.+.+..+|..      ++.+..++.++...|..+..|.+.++.+
T Consensus        40 ~~kr~tvld~~s~r~vn-~~~n-~s~~t~~~rl~~sknq~~~~~~d------~~q~~e~~~~~~~~n~~~~~p~s~~k~~  111 (326)
T KOG0473|consen   40 SFKRVTVLDLSSNRLVN-LGKN-FSILTRLVRLDLSKNQIKFLPKD------AKQQRETVNAASHKNNHSQQPKSQKKEP  111 (326)
T ss_pred             ccceeeeehhhhhHHHh-hccc-hHHHHHHHHHhccHhhHhhChhh------HHHHHHHHHHHhhccchhhCCccccccC
Confidence            56677777777766531 1222 24566677777777777777776      6667777777777777777777777777


Q ss_pred             CCCEEecCCCC
Q 037941          137 RLKLLDLSTCS  147 (308)
Q Consensus       137 ~L~~L~l~~~~  147 (308)
                      +++.++...+.
T Consensus       112 ~~k~~e~k~~~  122 (326)
T KOG0473|consen  112 HPKKNEQKKTE  122 (326)
T ss_pred             CcchhhhccCc
Confidence            77777777665

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=84.83  E-value=0.6  Score=23.83  Aligned_cols=16  Identities=25%  Similarity=0.463  Sum_probs=11.5

Q ss_pred             CCcccEEecccccccc
Q 037941          283 FPRLKHLLVQNASEIL  298 (308)
Q Consensus       283 ~~~L~~L~l~~c~~l~  298 (308)
                      +++|++|++.+|+++.
T Consensus         1 c~~L~~L~l~~C~~it   16 (26)
T smart00367        1 CPNLRELDLSGCTNIT   16 (26)
T ss_pred             CCCCCEeCCCCCCCcC
Confidence            4677788888887664

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=82.97  E-value=0.031  Score=45.68  Aligned_cols=85  Identities=7%  Similarity=-0.020  Sum_probs=70.5

Q ss_pred             hcCCCCeeEEeecCCCCCCCCcC-CCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCCCCCCccccccc
Q 037941           34 LMQKDPIAISHPCRDIQELPEKL-ECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVL  112 (308)
Q Consensus        34 ~~~~~l~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~~~~l~~l  112 (308)
                      .+....+.||++.|..-.+...+ -+..+..|+++.|.+. ..|.++ .....++.+++..|+.+..|.+      ++..
T Consensus        39 ~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~-~~~~d~-~q~~e~~~~~~~~n~~~~~p~s------~~k~  110 (326)
T KOG0473|consen   39 ASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIK-FLPKDA-KQQRETVNAASHKNNHSQQPKS------QKKE  110 (326)
T ss_pred             hccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHh-hChhhH-HHHHHHHHHHhhccchhhCCcc------cccc
Confidence            46778889999998876665555 6778888999988875 556665 6788899999999999999999      9999


Q ss_pred             ccccEEeecCCcCc
Q 037941          113 KKLVIFSFRNSHIE  126 (308)
Q Consensus       113 ~~L~~L~l~~~~i~  126 (308)
                      +++++++.-++.+.
T Consensus       111 ~~~k~~e~k~~~~~  124 (326)
T KOG0473|consen  111 PHPKKNEQKKTEFF  124 (326)
T ss_pred             CCcchhhhccCcch
Confidence            99999999998755

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	308
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-14
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-13
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-13
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-11
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	8e-06
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-11
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-11
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-09
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-07
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-10
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-08
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-10
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-06
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-04
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-10
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-10
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-05
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	9e-10
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	9e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-06
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-06
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-06
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-09
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-06
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-09
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-08
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-07
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-06
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-06
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-04
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-08
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-04
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-07
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-05
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-08
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-04
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-08
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-05
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	9e-04
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-08
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-04
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-04
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-08
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	5e-08
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-08
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-07
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-08
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	8e-05
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	6e-08
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-05
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	7e-08
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-07
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-07
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-07
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-07
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	9e-04
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-07
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-05
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-05
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-07
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-07
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-06
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	4e-05
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-07
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-07
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-05
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	5e-07
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-05
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	6e-07
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-06
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	7e-06
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	7e-07
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	8e-05
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	7e-07
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	8e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	9e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	7e-06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-06
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-06
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	9e-05
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-04
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-06
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-04
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-06
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	4e-06
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-04
3m19_A	251	Variable lymphocyte receptor A diversity region; a	5e-06
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	6e-06
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-05
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	9e-06
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-05
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	7e-05
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-05
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-05
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	6e-05
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-05
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-05
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	5e-05
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	6e-05
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-05
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	5e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	6e-05
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	8e-05
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	9e-04
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-04
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-04
3e6j_A	229	Variable lymphocyte receptor diversity region; var	2e-04
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-04
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	3e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	3e-04
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	5e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-04
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	7e-04

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 71.1 bits (175), Expect = 3e-14
 Identities = 38/165 (23%), Positives = 69/165 (41%), Gaps = 28/165 (16%)

Query: 49  IQELPEKL-ECPKLKLFFLFSEKLSLVIPDLF--------FEGVPSLQVLSLNGFHFPSL 99
           ++ LP  +    +L+   + +      +P+           +G+ +LQ L L      SL
Sbjct: 139 LRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSL 198

Query: 100 PSTLGDVATVGVLKKLVIFSFRNSHIEQLPEEIGQLTRLKLLDLSTCSKLKSIRPNVISN 159
           P+++ +      L+ L     RNS +  L   I  L +L+ LDL  C+ L++  P +   
Sbjct: 199 PASIAN------LQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNY-PPIFGG 251

Query: 160 LPRLEELYMGNSFTHWEVEGQNNASLAEL-NQLSRLTTLEMLILD 203
              L+ L +           ++ ++L  L   + RLT LE L L 
Sbjct: 252 RAPLKRLIL-----------KDCSNLLTLPLDIHRLTQLEKLDLR 285

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 68.8 bits (169), Expect = 2e-13
 Identities = 28/142 (19%), Positives = 48/142 (33%), Gaps = 10/142 (7%)

Query: 60  KLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKKLVIFS 119
             ++       L      L     P    L L     P  P           L  L   +
Sbjct: 57  NPQIETRTGRALKATADLLEDATQPGRVALELRSVPLPQFPDQAFR------LSHLQHMT 110

Query: 120 FRNSHIEQLPEEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMG--NSFTHWEV 177
              + + +LP+ + Q   L+ L L+    L+++ P  I++L RL EL +      T    
Sbjct: 111 IDAAGLMELPDTMQQFAGLETLTLARN-PLRAL-PASIASLNRLRELSIRACPELTELPE 168

Query: 178 EGQNNASLAELNQLSRLTTLEM 199
              +  +  E   L  L +L +
Sbjct: 169 PLASTDASGEHQGLVNLQSLRL 190

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 67.3 bits (165), Expect = 5e-13
 Identities = 30/169 (17%), Positives = 56/169 (33%), Gaps = 30/169 (17%)

Query: 46  CRDIQELPEKLE-CPKLKLFFLFSEKLSL-VIPDLFFEGVPSLQVLSLNGFHFPSLPSTL 103
            R ++   + LE   +     L    + L   PD  F  +  LQ ++++      LP T+
Sbjct: 65  GRALKATADLLEDATQPGRVALELRSVPLPQFPDQAFR-LSHLQHMTIDAAGLMELPDTM 123

Query: 104 GDVATVGVLKKLVIFSFRNSHIEQLPEEIGQLTRLKLLDLSTCSKLKSI--------RPN 155
                      L   +   + +  LP  I  L RL+ L +  C +L  +           
Sbjct: 124 QQ------FAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASG 177

Query: 156 VISNLPRLEELYMGNSFTHWEVEGQNNASLAEL-NQLSRLTTLEMLILD 203
               L  L+ L +  +             +  L   ++ L  L+ L + 
Sbjct: 178 EHQGLVNLQSLRLEWT------------GIRSLPASIANLQNLKSLKIR 214

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 61.9 bits (151), Expect = 3e-11
 Identities = 31/127 (24%), Positives = 53/127 (41%), Gaps = 12/127 (9%)

Query: 49  IQELPEKL-ECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGF-HFPSLPSTLGDV 106
           I+ LP  +     LK   + +  LS  +       +P L+ L L G     + P   G  
Sbjct: 195 IRSLPASIANLQNLKSLKIRNSPLS-ALGP-AIHHLPKLEELDLRGCTALRNYPPIFGG- 251

Query: 107 ATVGVLKKLVIFSFRN-SHIEQLPEEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEE 165
                   L     ++ S++  LP +I +LT+L+ LDL  C  L  + P++I+ LP    
Sbjct: 252 -----RAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRL-PSLIAQLPANCI 305

Query: 166 LYMGNSF 172
           + +    
Sbjct: 306 ILVPPHL 312

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 45.7 bits (109), Expect = 8e-06
 Identities = 23/117 (19%), Positives = 41/117 (35%), Gaps = 19/117 (16%)

Query: 49  IQELPEKL-ECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGF-HFPSLPSTLGDV 106
           +  L   +   PKL+   L         P   F G   L+ L L    +  +LP  +   
Sbjct: 218 LSALGPAIHHLPKLEELDLRGCTALRNYPP-IFGGRAPLKRLILKDCSNLLTLPLDIHR- 275

Query: 107 ATVGVLKKLVIFSFR-NSHIEQLPEEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPR 162
                L +L     R   ++ +LP  I QL    ++ +          P++ + L +
Sbjct: 276 -----LTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVP---------PHLQAQLDQ 318

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 60.1 bits (146), Expect = 2e-10
 Identities = 39/186 (20%), Positives = 63/186 (33%), Gaps = 31/186 (16%)

Query: 49  IQELPEKL--ECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDV 106
           IQ +          L++  L    +   I    F G+ +L  L L      ++P+     
Sbjct: 76  IQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLELFDNRLTTIPNG---- 130

Query: 107 ATVGVLKKLVIFSFRNSHIEQLPEEI-GQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEE 165
                L KL     RN+ IE +P     ++  L+ LDL    +L  I       L  L  
Sbjct: 131 -AFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRY 189

Query: 166 LYMGNSFTHWEVEGQNNASLAELNQLSRLTTLEMLILDA---QVMPRELFS-------LG 215
           L +             N  L E+  L+ L  L+ L L       +    F        L 
Sbjct: 190 LNLAM----------CN--LREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLW 237

Query: 216 LERNKI 221
           + +++I
Sbjct: 238 MIQSQI 243

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 54.0 bits (130), Expect = 2e-08
 Identities = 34/158 (21%), Positives = 60/158 (37%), Gaps = 21/158 (13%)

Query: 49  IQELPEKL--ECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDV 106
           I+ +P       P L+   L   K    I +  FEG+ +L+ L+L   +   +P+     
Sbjct: 148 IESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTP-- 205

Query: 107 ATVGVLKKLVIFSFRNSHIEQLPEEI-GQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEE 165
                L KL       +H+  +       L  L+ L +    +++ I  N   NL  L E
Sbjct: 206 -----LIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQS-QIQVIERNAFDNLQSLVE 259

Query: 166 LYMGNSFTHWEVEGQNNASLAELNQLSRLTTLEMLILD 203
           + + +          NN +L   +  + L  LE + L 
Sbjct: 260 INLAH----------NNLTLLPHDLFTPLHHLERIHLH 287

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 59.2 bits (144), Expect = 3e-10
 Identities = 27/187 (14%), Positives = 66/187 (35%), Gaps = 18/187 (9%)

Query: 49  IQELPEKL--ECPKLKLFFLFSEKL-SLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGD 105
           I ++ + +     ++ +  L +  L S  I +  F+G+  L  + +   +  ++P     
Sbjct: 133 ITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQ---- 188

Query: 106 VATVGVLKKLVIFSFRNSHIEQLPEEI-GQLTRLKLLDLSTCSKLKSIRPNVISNLPRLE 164
               G+   L       + I ++       L  L  L LS    + ++    ++N P L 
Sbjct: 189 ----GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFN-SISAVDNGSLANTPHLR 243

Query: 165 ELYM-GNSFTHWEVEGQNNASLAEL----NQLSRLTTLEMLILDAQVMPRELFSLGLERN 219
           EL++  N          ++  +  +    N +S + + +               + L  N
Sbjct: 244 ELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSN 303

Query: 220 KIFLGDV 226
            +   ++
Sbjct: 304 PVQYWEI 310

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 47.7 bits (114), Expect = 2e-06
 Identities = 31/152 (20%), Positives = 59/152 (38%), Gaps = 19/152 (12%)

Query: 75  IPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKKLVIFSFRNSHIEQLPEEIGQ 134
           I D  F+ + +L  L L       +            L KL       + +++LPE    
Sbjct: 67  IKDGDFKNLKNLHTLILINNKISKISPGAFAP-----LVKLERLYLSKNQLKELPE--KM 119

Query: 135 LTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMG-NSFTHWEVEGQNNASLAELNQLS- 192
              L+ L +    ++  +R +V + L ++  + +G N      +E      + +L+ +  
Sbjct: 120 PKTLQELRVHEN-EITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRI 178

Query: 193 ---RLTTLEMLILDAQVMPRELFSLGLERNKI 221
               +TT+       Q +P  L  L L+ NKI
Sbjct: 179 ADTNITTIP------QGLPPSLTELHLDGNKI 204

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 42.3 bits (100), Expect = 1e-04
 Identities = 20/132 (15%), Positives = 41/132 (31%), Gaps = 17/132 (12%)

Query: 49  IQELPEKL--ECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDV 106
           I ++          L    L    +S  + +      P L+ L LN      +P  L D 
Sbjct: 204 ITKVDAASLKGLNNLAKLGLSFNSIS-AVDNGSLANTPHLRELHLNNNKLVKVPGGLAD- 261

Query: 107 ATVGVLKKLVIFSFRNSHIEQLPEE-------IGQLTRLKLLDLST-CSKLKSIRPNVIS 158
                 K + +    N++I  +            +      + L +   +   I+P+   
Sbjct: 262 -----HKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFR 316

Query: 159 NLPRLEELYMGN 170
            +     + +GN
Sbjct: 317 CVYVRAAVQLGN 328

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 59.0 bits (143), Expect = 5e-10
 Identities = 40/187 (21%), Positives = 63/187 (33%), Gaps = 33/187 (17%)

Query: 49  IQELPEKL--ECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPS-TLGD 105
           IQ +          L++  L    +   I    F G+ SL  L L       +PS     
Sbjct: 87  IQMIQADTFRHLHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLELFDNWLTVIPSGAFEY 145

Query: 106 VATVGVLKKLVIFSFRNSHIEQLPEEI-GQLTRLKLLDLSTCSKLKSIRPNVISNLPRLE 164
                 L KL     RN+ IE +P     ++  L  LDL    KL+ I       L  L+
Sbjct: 146 ------LSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLK 199

Query: 165 ELYMGNSFTHWEVEGQNNASLAELNQLSRLTTLEMLILDA---QVMPRELFS-------L 214
            L +G            N  + ++  L+ L  LE L +       +    F        L
Sbjct: 200 YLNLGM----------CN--IKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKL 247

Query: 215 GLERNKI 221
            +  +++
Sbjct: 248 WVMNSQV 254

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 52.8 bits (127), Expect = 5e-08
 Identities = 34/158 (21%), Positives = 55/158 (34%), Gaps = 21/158 (13%)

Query: 49  IQELPEKL--ECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDV 106
           I+ +P       P L    L   K    I +  FEG+ +L+ L+L   +   +P+     
Sbjct: 159 IESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTP-- 216

Query: 107 ATVGVLKKLVIFSFRNSHIEQLPEE-IGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEE 165
                L  L       +H  ++       L+ LK L +    ++  I  N    L  L E
Sbjct: 217 -----LVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNS-QVSLIERNAFDGLASLVE 270

Query: 166 LYMGNSFTHWEVEGQNNASLAELNQLSRLTTLEMLILD 203
           L + +          NN S    +  + L  L  L L 
Sbjct: 271 LNLAH----------NNLSSLPHDLFTPLRYLVELHLH 298

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 58.9 bits (143), Expect = 6e-10
 Identities = 48/239 (20%), Positives = 83/239 (34%), Gaps = 19/239 (7%)

Query: 58  CPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKKLVI 117
             +L    +    +S + P+L  + +P L+VL+L       L        T      L  
Sbjct: 48  YSQLTSLDVGFNTISKLEPELC-QKLPMLKVLNLQHNELSQLSDK-----TFAFCTNLTE 101

Query: 118 FSFRNSHIEQLPEE-IGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGN----SF 172
               ++ I+++      +   L  LDLS    L S +      L  L+EL + N    + 
Sbjct: 102 LHLMSNSIQKIKNNPFVKQKNLITLDLSHN-GLSSTKLGTQVQLENLQELLLSNNKIQAL 160

Query: 173 THWEVEGQNNASLAELNQLS--RLTTLEMLILDAQVMPRELFSLGLERNKIFLGDVWSWT 230
              E++   N+SL +L  LS  ++         A      LF L L   ++         
Sbjct: 161 KSEELDIFANSSLKKLE-LSSNQIKEFSPGCFHAI---GRLFGLFLNNVQLGPSLTEKLC 216

Query: 231 GKYETSRTLKLKLDNRMYLEHGIKMLLRRTEDLHLDKLNGLQNVLHELDGEGFPRLKHL 289
            +   +    L L N   L           +  +L  L+   N L+ +  + F  L  L
Sbjct: 217 LELANTSIRNLSLSN-SQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQL 274

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 52.3 bits (126), Expect = 8e-08
 Identities = 31/157 (19%), Positives = 53/157 (33%), Gaps = 18/157 (11%)

Query: 49  IQELPEKL--ECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDV 106
           + +L +K    C  L    L S  +  +  + F     +L  L L+     S        
Sbjct: 85  LSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPF-VKQKNLITLDLSHNGLSSTKL----- 138

Query: 107 ATVGVLKKLVIFSFRNSHIEQLPEE---IGQLTRLKLLDLSTCSKLKSIRPNVISNLPRL 163
            T   L+ L      N+ I+ L  E   I   + LK L+LS+  ++K   P     + RL
Sbjct: 139 GTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSN-QIKEFSPGCFHAIGRL 197

Query: 164 EELYM-GNSFTHWEVEGQNNASLAELNQLSRLTTLEM 199
             L++                 L      + +  L +
Sbjct: 198 FGLFLNNVQLG-----PSLTEKLCLELANTSIRNLSL 229

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 48.5 bits (116), Expect = 2e-06
 Identities = 37/198 (18%), Positives = 69/198 (34%), Gaps = 39/198 (19%)

Query: 58  CPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLG------------- 104
              +   +L   K   +  + F   VPSLQ L L      ++ S+               
Sbjct: 429 LENIFEIYLSYNKYLQLTRNSF-ALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDL 487

Query: 105 --------DVATVGVLKKLVIFSFRNSHIEQLPEE---------IGQLTRLKLLDLSTCS 147
                   +   +  L+KL I   +++++ +L +          +  L+ L +L+L +  
Sbjct: 488 SNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESN- 546

Query: 148 KLKSIRPNVISNLPRLEELYM-GNSFTHWEVEG-QNNASLAELNQLS--RLTTLEMLILD 203
               I   V  +L  L+ + +  N+          N  SL  LN L    +T++E  +  
Sbjct: 547 GFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLN-LQKNLITSVEKKVF- 604

Query: 204 AQVMPRELFSLGLERNKI 221
                R L  L +  N  
Sbjct: 605 -GPAFRNLTELDMRFNPF 621

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 47.7 bits (114), Expect = 3e-06
 Identities = 28/146 (19%), Positives = 50/146 (34%), Gaps = 18/146 (12%)

Query: 58  CPKLKLFFLFSEKLSLV-IPDLFFEGVP--SLQVLSLNGFHFPSLPSTLGDVATVGVLKK 114
              LK   L +   SL  + +  F  +    L +L+L       + S          L  
Sbjct: 352 LINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESD-----AFSWLGH 406

Query: 115 LVIFSFRNSHIEQL--PEEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYM-GNS 171
           L +     + I Q    +E   L  +  + LS   K   +  N  + +P L+ L +   +
Sbjct: 407 LEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYN-KYLQLTRNSFALVPSLQRLMLRRVA 465

Query: 172 FTHWEVEGQNNASLAELNQLSRLTTL 197
             +       ++S +    L  LT L
Sbjct: 466 LKN------VDSSPSPFQPLRNLTIL 485

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 44.2 bits (105), Expect = 4e-05
 Identities = 30/165 (18%), Positives = 58/165 (35%), Gaps = 27/165 (16%)

Query: 50  QELPEKLECPKLKLFFLFSEKLSLVIPDLFFE-GVPSLQVLSLNGFHFPSL-PSTLGDVA 107
           ++L  +L    ++   L + +LS      F      +L +L L+  +   +   +     
Sbjct: 213 EKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAW-- 270

Query: 108 TVGVLKKLVIFSFRNSHIEQL-PEEIGQLTRLKLLDLS--------TCSKLKSIRPNVIS 158
               L +L  F    ++I+ L    +  L  ++ L+L         + + L  I      
Sbjct: 271 ----LPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQ 326

Query: 159 NLPRLEELYMGNSFTHWEVEGQNNASLAELNQLSRLTTLEMLILD 203
            L  LE L M +          N+    + N  + L  L+ L L 
Sbjct: 327 WLKCLEHLNMED----------NDIPGIKSNMFTGLINLKYLSLS 361

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 58.5 bits (142), Expect = 9e-10
 Identities = 22/168 (13%), Positives = 57/168 (33%), Gaps = 26/168 (15%)

Query: 46  CRDIQELPEKL-ECPKLKLFFLFSEKLSLVIPDLFFEGV--------PSLQVLSLNGFHF 96
           C ++ +LP  L   P+++L  +   +  +    L  +            +Q++ +   + 
Sbjct: 259 CPNLTKLPTFLKALPEMQLINVACNRG-ISGEQLKDDWQALADAPVGEKIQIIYIGYNNL 317

Query: 97  PSLPSTLGDVATVGVLKKLVIFSFRNSHIEQLPEEIGQLTRLKLLDLSTCSKLKSIRPNV 156
            + P       ++  +KKL +     + +E      G   +L  L+L+   ++  I  N 
Sbjct: 318 KTFPVE----TSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYN-QITEIPANF 372

Query: 157 ISNLPRLEELYM-GNSFTHWEVEGQNNASLAELNQLSRLTTLEMLILD 203
                ++E L    N              +  +     ++ +  +   
Sbjct: 373 CGFTEQVENLSFAHNKLK----------YIPNIFDAKSVSVMSAIDFS 410

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 49.3 bits (118), Expect = 9e-07
 Identities = 22/172 (12%), Positives = 48/172 (27%), Gaps = 36/172 (20%)

Query: 49  IQELPEKLE---CPKLKLFFLFSEKLSLVIPDLF------FEGVPSLQVLSLNGFHFPSL 99
           ++ +P   +      +        ++  V    F           ++  ++L+       
Sbjct: 389 LKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKF 448

Query: 100 PSTLGDVATVGVLKKLVIFSFRNSHIEQLP--------EEIGQLTRLKLLDLSTCSKLKS 151
           P  L           L   +   + + ++P        E       L  +DL    KL  
Sbjct: 449 PKELF-----STGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFN-KLTK 502

Query: 152 IRPNV-ISNLPRLEELYM-GNSFTHWEVEGQNNASL-AELNQLSRLTTLEML 200
           +  +   + LP L  + +  NSF+              +    S L    + 
Sbjct: 503 LSDDFRATTLPYLVGIDLSYNSFS----------KFPTQPLNSSTLKGFGIR 544

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 48.5 bits (116), Expect = 1e-06
 Identities = 21/162 (12%), Positives = 54/162 (33%), Gaps = 30/162 (18%)

Query: 49  IQELPEKL-ECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVA 107
           I  + + +    KL+ F++ +           +E   + +          +      +  
Sbjct: 195 ITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWE-NENSEYAQQYK----TEDLKWDN-- 247

Query: 108 TVGVLKKLVIFSF-RNSHIEQLPEEIGQLTRLKLLDLSTCSKLKSI--------RPNVIS 158
               LK L         ++ +LP  +  L  ++L++++   +  S               
Sbjct: 248 ----LKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACN-RGISGEQLKDDWQALADAP 302

Query: 159 NLPRLEELYM-GNSFTHWEVEGQNNASLAELNQLSRLTTLEM 199
              +++ +Y+  N+   + VE         L ++ +L  LE 
Sbjct: 303 VGEKIQIIYIGYNNLKTFPVE-------TSLQKMKKLGMLEC 337

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 48.1 bits (115), Expect = 2e-06
 Identities = 24/139 (17%), Positives = 44/139 (31%), Gaps = 19/139 (13%)

Query: 45  PCRDIQELPEKL-ECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTL 103
           P   +++  E       L    L   KL+ +  D     +P L  + L+   F   P+  
Sbjct: 473 PKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQP 532

Query: 104 GDVATVGVLKKLVIFSFR-------NSHIEQLPEEIGQLTRLKLLDLSTCSKLKSIRPNV 156
            +         L  F  R       N  + + PE I     L  L + +   ++ +   +
Sbjct: 533 LN------SSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSN-DIRKVNEKI 585

Query: 157 ISNLPRLEELYM-GNSFTH 174
               P +  L +  N    
Sbjct: 586 ---TPNISVLDIKDNPNIS 601

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 47.3 bits (113), Expect = 3e-06
 Identities = 19/152 (12%), Positives = 46/152 (30%), Gaps = 32/152 (21%)

Query: 71  LSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKKLVIFSFRNSHIEQLPE 130
           + +     F +  P      L      S P       +  +  K       +++I  + +
Sbjct: 141 MRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSK 200

Query: 131 EIGQLTRLKLLDLS-------------------TCSKLKSIRPNVISNLPRLEELYMGNS 171
            + +LT+L+   +                       + K+       NL  L ++ +   
Sbjct: 201 AVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTE-DLKWDNLKDLTDVEV--- 256

Query: 172 FTHWEVEGQNNASLAEL-NQLSRLTTLEMLIL 202
                    N  +L +L   L  L  ++++ +
Sbjct: 257 --------YNCPNLTKLPTFLKALPEMQLINV 280

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 57.2 bits (138), Expect = 3e-09
 Identities = 24/180 (13%), Positives = 55/180 (30%), Gaps = 25/180 (13%)

Query: 49  IQELPEKL--ECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDV 106
           I+E+PE       +++       KL  +      + V  +  +  +     S    +   
Sbjct: 607 IEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCS 666

Query: 107 ATVGVLKKLVIFSFRNSHIEQLPEEI-GQLTRLKLLDLSTCSKLKSI-------RPNVIS 158
                       +   + I++ P E+    + +  + LS    + SI       +     
Sbjct: 667 MDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNN-LMTSIPENSLKPKDGNYK 725

Query: 159 NLPRLEELYM-GNSFTHWEVEGQNNASLAELNQLSRLTTLEMLILDA---QVMPRELFSL 214
           N   L  + +  N  T          SL++  + + L  L  + +        P +  + 
Sbjct: 726 NTYLLTTIDLRFNKLT----------SLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNS 775

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 55.3 bits (133), Expect = 1e-08
 Identities = 22/166 (13%), Positives = 48/166 (28%), Gaps = 30/166 (18%)

Query: 56  LECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKKL 115
            E     +      ++ +    +F +    L +  L        P          +  K 
Sbjct: 368 DEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKD 427

Query: 116 VIFSFRNSHIEQLPEEIGQLTRLKLLDLSTCS------------------KLKSIRPNVI 157
                  + I  + + I +LT+L+++  +                     K         
Sbjct: 428 TQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSW 487

Query: 158 SNLPRLEELYMGNSFTHWEVEGQNNASLAEL-NQLSRLTTLEMLIL 202
           SNL  L ++ +            N  ++ +L + L  L  L+ L +
Sbjct: 488 SNLKDLTDVEL-----------YNCPNMTQLPDFLYDLPELQSLNI 522

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 54.5 bits (131), Expect = 2e-08
 Identities = 28/188 (14%), Positives = 59/188 (31%), Gaps = 16/188 (8%)

Query: 42  ISHPCRDIQELPEKL-ECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLP 100
            +    D   L +     PK+++F++    L         + +  L +L         L 
Sbjct: 530 AAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE 589

Query: 101 STLGDVATVGVLKKLVIFSFRNSHIEQLPEEIGQLTR-LKLLDLSTCSKLKSIRPNV-IS 158
           +        G   KL       + IE++PE+    T  ++ L  S   KLK I       
Sbjct: 590 A-------FGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHN-KLKYIPNIFNAK 641

Query: 159 NLPRLEELYM-GNSFTHWEVEGQNNASLAELNQLSRLT----TLEMLILDAQVMPRELFS 213
           ++  +  +    N           +    +    S +T     ++    +       + +
Sbjct: 642 SVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPIST 701

Query: 214 LGLERNKI 221
           + L  N +
Sbjct: 702 IILSNNLM 709

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 51.0 bits (122), Expect = 2e-07
 Identities = 23/125 (18%), Positives = 41/125 (32%), Gaps = 18/125 (14%)

Query: 58  CPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKKLVI 117
              L    L   KL+ +  D     +P L  + ++   F S P+   +        +L  
Sbjct: 727 TYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLN------SSQLKA 780

Query: 118 FSFR-------NSHIEQLPEEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYM-G 169
           F  R       N  + Q P  I     L  L + +   ++ +   +    P+L  L +  
Sbjct: 781 FGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSN-DIRKVDEKL---TPQLYILDIAD 836

Query: 170 NSFTH 174
           N    
Sbjct: 837 NPNIS 841

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 56.6 bits (137), Expect = 4e-09
 Identities = 34/169 (20%), Positives = 71/169 (42%), Gaps = 13/169 (7%)

Query: 58  CPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKKLVI 117
           CP+L+L  L   +L +      F+ +  L+VL+L+          L        L  L  
Sbjct: 399 CPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQL-----FDGLPALQH 453

Query: 118 FSFRNSHIEQLPEE----IGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYM-GNSF 172
            + + +H  +   +    +  L RL++L LS C  L SI  +  ++L  +  + +  N  
Sbjct: 454 LNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFC-DLSSIDQHAFTSLKMMNHVDLSHNRL 512

Query: 173 THWEVEGQNNASLAELNQLSRLTTLEMLILDAQVMPRELFSLGLERNKI 221
           T   +E  ++     LN L+    + +++     +  +  ++ L +N +
Sbjct: 513 TSSSIEALSHLKGIYLN-LAS-NHISIILPSLLPILSQQRTINLRQNPL 559

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 53.1 bits (128), Expect = 5e-08
 Identities = 33/176 (18%), Positives = 55/176 (31%), Gaps = 16/176 (9%)

Query: 52  LPEKLECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGV 111
           + E L    ++   L       +  + F      LQ L L   H   LPS L        
Sbjct: 247 VFEGLCEMSVESINLQKHYFFNISSNTF-HCFSGLQELDLTATHLSELPSGLVG------ 299

Query: 112 LKKLVIFSFRNSHIEQLPEE-IGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMG- 169
           L  L       +  E L +        L  L +   +K   +    + NL  L EL +  
Sbjct: 300 LSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSH 359

Query: 170 NSFTHWEVEGQNNASLAELNQLS----RLTTLEMLILDAQVMPRELFSLGLERNKI 221
           +     +       +L+ L  L+       +L+         P+ L  L L   ++
Sbjct: 360 DDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKE--CPQ-LELLDLAFTRL 412

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 48.9 bits (117), Expect = 1e-06
 Identities = 35/229 (15%), Positives = 66/229 (28%), Gaps = 30/229 (13%)

Query: 75  IPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKKLVIFSFRNSHIEQLPEEI-G 133
           I +  F  + +L  L L       +        T     +L       + +  + E    
Sbjct: 48  IQNTTFSRLINLTFLDLTRCQIYWIHE-----DTFQSQHRLDTLVLTANPLIFMAETALS 102

Query: 134 QLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEVEGQNNASLAELNQLSR 193
               LK L       + SI    + N   LE LY+G+          N+ S  +L +   
Sbjct: 103 GPKALKHLFFIQT-GISSIDFIPLHNQKTLESLYLGS----------NHISSIKLPKGFP 151

Query: 194 LTTLEMLILDA---QVMPRELFS-------LGLERNKIFLGDVWSWTGKYETSRTLKLKL 243
              L++L         + +E  S       L L  N   +  +          ++L    
Sbjct: 152 TEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGG 211

Query: 244 DNRMYLEHGIKMLLRRTEDLHLDKLNGLQNVLHELDGEGFPRLKHLLVQ 292
              + +       L+ +    L           ++    F  L  + V+
Sbjct: 212 TQNLLVIFKG---LKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVE 257

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 56.1 bits (136), Expect = 6e-09
 Identities = 30/128 (23%), Positives = 50/128 (39%), Gaps = 14/128 (10%)

Query: 51  ELPEKL-ECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSL--NGFHFPSLPSTLGDVA 107
           +    +  C +LKL  + S +    IP      + SLQ LSL  N F    +P  L    
Sbjct: 238 DFSRAISTCTELKLLNISSNQFVGPIPP---LPLKSLQYLSLAENKFT-GEIPDFLS--- 290

Query: 108 TVGVLKKLVIFSFRNSHIE-QLPEEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEEL 166
             G    L       +H    +P   G  + L+ L LS+ +    +  + +  +  L+ L
Sbjct: 291 --GACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVL 348

Query: 167 YMG-NSFT 173
            +  N F+
Sbjct: 349 DLSFNEFS 356

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 53.4 bits (129), Expect = 4e-08
 Identities = 30/141 (21%), Positives = 49/141 (34%), Gaps = 15/141 (10%)

Query: 58  CPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSL--NGFHFPSLPSTLGDVATVGVLKKL 115
              LK+  L   + S  +P+       SL  L L  N F  P +   L           L
Sbjct: 342 MRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGP-ILPNLCQ----NPKNTL 396

Query: 116 VIFSFRNSHIE-QLPEEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYM-GNSFT 173
                +N+    ++P  +   + L  L LS    L    P+ + +L +L +L +  N   
Sbjct: 397 QELYLQNNGFTGKIPPTLSNCSELVSLHLSFNY-LSGTIPSSLGSLSKLRDLKLWLNMLE 455

Query: 174 HWEVEGQNNASLAELNQLSRL 194
                G+    L  +  L  L
Sbjct: 456 -----GEIPQELMYVKTLETL 471

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 51.4 bits (124), Expect = 2e-07
 Identities = 22/118 (18%), Positives = 39/118 (33%), Gaps = 15/118 (12%)

Query: 84  PSLQVLSLNGFHFPSLPSTLGDVATVGVLKKLVIFSFRNSHIE-QLPE--EIGQLTRLKL 140
             L+ L L+  H        G V+       L       + +   +     +G  + LK 
Sbjct: 77  TGLESLFLSNSHIN------GSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKF 130

Query: 141 LDLSTCSKLKSIRPNVISNLPRLEELYM-GNSFTHWEVEGQNNASLAELNQLSRLTTL 197
           L++S+ +     + +    L  LE L +  NS +     G N       +    L  L
Sbjct: 131 LNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSIS-----GANVVGWVLSDGCGELKHL 183

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 48.8 bits (117), Expect = 1e-06
 Identities = 28/169 (16%), Positives = 47/169 (27%), Gaps = 40/169 (23%)

Query: 51  ELPEKLECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFP-SLPSTLGDVATV 109
                  C +LK   +   K+S  +         +L+ L ++  +F   +P        +
Sbjct: 170 GWVLSDGCGELKHLAISGNKISGDVD---VSRCVNLEFLDVSSNNFSTGIPF-------L 219

Query: 110 GVLKKLVIFSFRNSHIE-QLPEEIGQLTRLKLLDLS-----------TCSKLK------- 150
           G    L       + +       I   T LKLL++S               L+       
Sbjct: 220 GDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAEN 279

Query: 151 ----SIRPNVISNLPRLEELYM-GNSFTHWEVEGQNNASLAELNQLSRL 194
                I   +      L  L + GN F      G         + L  L
Sbjct: 280 KFTGEIPDFLSGACDTLTGLDLSGNHFY-----GAVPPFFGSCSLLESL 323

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 48.4 bits (116), Expect = 2e-06
 Identities = 33/183 (18%), Positives = 54/183 (29%), Gaps = 44/183 (24%)

Query: 58  CPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHF-PSLPSTLGDVATVGVLKKLV 116
           C  LK   + S  L           + SL+VL L+      +               +L 
Sbjct: 125 CSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGW---VLSDGCGELK 181

Query: 117 IFSFRNSHIE-QLPEEIGQLTRLKLLDLST------------CSKLKSIR---------- 153
             +   + I   +   + +   L+ LD+S+            CS L+ +           
Sbjct: 182 HLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDF 239

Query: 154 PNVISNLPRLEELYM-GNSFTHWEVEGQNNASLAEL----NQLS---------RLTTLEM 199
              IS    L+ L +  N F    +      SL  L    N+ +            TL  
Sbjct: 240 SRAISTCTELKLLNISSNQFV-GPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTG 298

Query: 200 LIL 202
           L L
Sbjct: 299 LDL 301

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 41.4 bits (98), Expect = 3e-04
 Identities = 34/184 (18%), Positives = 57/184 (30%), Gaps = 43/184 (23%)

Query: 51  ELPEKL-ECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFP-SLPSTLG---- 104
            +P  L    KL+   L+   L   IP        +L+ L L+       +PS L     
Sbjct: 433 TIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYV-KTLETLILDFNDLTGEIPSGLSNCTN 491

Query: 105 ----DV----------ATVGVLKKLVIFSFRNSHIE-QLPEEIGQLTRLKLLDLS----- 144
                +            +G L+ L I    N+     +P E+G    L  LDL+     
Sbjct: 492 LNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFN 551

Query: 145 --------TCSKLKSI------RPNVISNLPRLEELYMGNSFTHWEVEGQNNASLAELNQ 190
                     S   +       R   I N    +E +   +   +  +G  +  L  L+ 
Sbjct: 552 GTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEF--QGIRSEQLNRLST 609

Query: 191 LSRL 194
            +  
Sbjct: 610 RNPC 613

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 55.0 bits (133), Expect = 1e-08
 Identities = 34/244 (13%), Positives = 71/244 (29%), Gaps = 29/244 (11%)

Query: 49  IQELPEKL--ECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDV 106
           +  L      +   LK   +    +       +F  + +L  + L+  +  ++       
Sbjct: 116 LASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQF 175

Query: 107 ATVGVLKKLVIFSFRNSHIEQLPEEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEEL 166
                 +  +      + I+ + ++  Q  +L  L L       +I    + NL  L   
Sbjct: 176 LR-ENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVH 234

Query: 167 YMGNSFTHWEVEGQNNASLAELNQLSRLTTLEMLILDAQVMPRELFSLGLERNKIFLGDV 226
                    E + + N  + E + +  L  + +                L     F  D+
Sbjct: 235 ----RLILGEFKDERNLEIFEPSIMEGLCDVTIDEFR------------LTYTNDFSDDI 278

Query: 227 WSWTGKYETSRTLKLKLDNRMYLEH-GIKMLLRRTEDLHLDKLNGLQNVLHELDGEGFPR 285
             +           L   + M L    IK L    +      L+ ++  L +      P 
Sbjct: 279 VKFHC---------LANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPF 329

Query: 286 LKHL 289
           LK L
Sbjct: 330 LKSL 333

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 50.4 bits (121), Expect = 3e-07
 Identities = 29/156 (18%), Positives = 51/156 (32%), Gaps = 18/156 (11%)

Query: 75  IPDLFFEGVPSLQVLSLNGFHFPSL-PSTLGDVATVGVLKKLVIFSFRNSHIEQLPEE-I 132
           +    F     LQ L L+     ++             L  L       + I+       
Sbjct: 47  LKSYSFSNFSELQWLDLSRCEIETIEDKAWHG------LHHLSNLILTGNPIQSFSPGSF 100

Query: 133 GQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYM-GNSFTHWEVEG--QNNASLAEL- 188
             LT L+ L       L S+    I  L  L++L +  N     ++     N  +L  + 
Sbjct: 101 SGLTSLENLVAVETK-LASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVD 159

Query: 189 ---NQLSRLTTLEMLILDAQVMPRELFSLGLERNKI 221
              N +  +T  ++  L  +  P+   SL +  N I
Sbjct: 160 LSYNYIQTITVNDLQFL--RENPQVNLSLDMSLNPI 193

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 50.0 bits (120), Expect = 4e-07
 Identities = 23/121 (19%), Positives = 39/121 (32%), Gaps = 8/121 (6%)

Query: 56  LECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKKL 115
           L    L+   L        I    F G+  LQ L             + + +    L+KL
Sbjct: 373 LGTNSLRHLDLSFNGAI--IMSANFMGLEELQHLDFQHSTL----KRVTEFSAFLSLEKL 426

Query: 116 VIFSFRNSHIEQLPEEI-GQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYM-GNSFT 173
           +      ++ +   + I   LT L  L ++  S   +   NV +N   L  L +      
Sbjct: 427 LYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLE 486

Query: 174 H 174
            
Sbjct: 487 Q 487

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 46.9 bits (112), Expect = 4e-06
 Identities = 41/227 (18%), Positives = 71/227 (31%), Gaps = 22/227 (9%)

Query: 75  IPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKKLVIFSFRNSHIEQLPEE-IG 133
           I D  + G+  L  L L G    S         +   L  L       + +  L    IG
Sbjct: 71  IEDKAWHGLHHLSNLILTGNPIQSFSPG-----SFSGLTSLENLVAVETKLASLESFPIG 125

Query: 134 QLTRLKLLDLSTCSKLKSI-RPNVISNLPRLEELYM-GNSFTHWEVE-----GQNNASLA 186
           QL  LK L+++    + S   P   SNL  L  + +  N      V       +N     
Sbjct: 126 QLITLKKLNVAHN-FIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNL 184

Query: 187 ELN-QLSRLTTLEMLILDAQVMPRELFSLGLERNKIFLGDVWSWTGKYETSRTLKL---K 242
            L+  L+ +  ++           +L  L L  N      + +           +L   +
Sbjct: 185 SLDMSLNPIDFIQDQAFQGI----KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGE 240

Query: 243 LDNRMYLEHGIKMLLRRTEDLHLDKLNGLQNVLHELDGEGFPRLKHL 289
             +   LE     ++    D+ +D+           D   F  L ++
Sbjct: 241 FKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANV 287

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 40.8 bits (96), Expect = 4e-04
 Identities = 30/195 (15%), Positives = 60/195 (30%), Gaps = 28/195 (14%)

Query: 49  IQELPEKLECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNG------FHFPSLPS- 101
           I+ L +  +  K +   +   +L           +P L+ L+L        F   +LPS 
Sbjct: 297 IKYLEDVPKHFKWQSLSIIRCQLK----QFPTLDLPFLKSLTLTMNKGSISFKKVALPSL 352

Query: 102 -----------TLGDVATVGV-LKKLVIFSFRNSHIEQLPEEIGQLTRLKLLDLSTCSKL 149
                        G  +   +    L       +    +      L  L+ LD    S L
Sbjct: 353 SYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQH-STL 411

Query: 150 KSIRP-NVISNLPRLEELYM-GNSFTHWEVEG-QNNASLAELNQLSRLTTLEMLILDAQV 206
           K +   +   +L +L  L +   +             SL  L  ++  +  +  + +   
Sbjct: 412 KRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLK-MAGNSFKDNTLSNVFA 470

Query: 207 MPRELFSLGLERNKI 221
               L  L L + ++
Sbjct: 471 NTTNLTFLDLSKCQL 485

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 55.0 bits (133), Expect = 1e-08
 Identities = 29/153 (18%), Positives = 52/153 (33%), Gaps = 19/153 (12%)

Query: 48  DIQELPEK-LECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSL--NGFHFPSLPSTLG 104
            +  +    L   +L+        L  +     F  + +L  L +        +      
Sbjct: 384 GVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV-AFNGIFN 442

Query: 105 DVATVGVLKKLVIFSFRNSHIEQ--LPEEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPR 162
                  L  L +     +  ++  LP+   +L  L  LDLS C +L+ + P   ++L  
Sbjct: 443 G------LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSS 495

Query: 163 LEELYM-GNSFTHWEVEGQNNASLAELNQLSRL 194
           L+ L M  N+F        +      LN L  L
Sbjct: 496 LQVLNMSHNNFF-----SLDTFPYKCLNSLQVL 523

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 50.4 bits (121), Expect = 4e-07
 Identities = 21/139 (15%), Positives = 48/139 (34%), Gaps = 13/139 (9%)

Query: 58  CPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKKLVI 117
              LK   L    +  +  +  F G+  L+ L     +       + + +    L+ L+ 
Sbjct: 372 TTSLKYLDLSFNGVITMSSN--FLGLEQLEHLDFQHSNL----KQMSEFSVFLSLRNLIY 425

Query: 118 FSFRNSHIEQL-PEEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYM-GNSFTHW 175
               ++H           L+ L++L ++  S  ++  P++ + L  L  L +        
Sbjct: 426 LDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-- 483

Query: 176 EVEGQNNASLAELNQLSRL 194
                +  +   L+ L  L
Sbjct: 484 ---QLSPTAFNSLSSLQVL 499

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 44.2 bits (105), Expect = 3e-05
 Identities = 30/139 (21%), Positives = 48/139 (34%), Gaps = 13/139 (9%)

Query: 58  CPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKKLVI 117
            P+L++  L   ++  +    + + +  L  L L G    SL            L  L  
Sbjct: 51  FPELQVLDLSRCEIQTIEDGAY-QSLSHLSTLILTGNPIQSLALG-----AFSGLSSLQK 104

Query: 118 FSFRNSHIEQL-PEEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYM-GNSFTHW 175
                +++  L    IG L  LK L+++         P   SNL  LE L +  N     
Sbjct: 105 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-- 162

Query: 176 EVEGQNNASLAELNQLSRL 194
                    L  L+Q+  L
Sbjct: 163 ---SIYCTDLRVLHQMPLL 178

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 54.8 bits (132), Expect = 2e-08
 Identities = 42/222 (18%), Positives = 77/222 (34%), Gaps = 23/222 (10%)

Query: 75  IPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKKLVIFSFRNSHIEQLPEEI-G 133
           +    FE +  L+VL+L       +            L  L + +   + + +L      
Sbjct: 281 LNSRVFETLKDLKVLNLAYNKINKIADE-----AFYGLDNLQVLNLSYNLLGELYSSNFY 335

Query: 134 QLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYM-GNSFTHWEVEGQNNASLAELNQ-L 191
            L ++  +DL     +  I+      L +L+ L +  N+ T          S+ ++    
Sbjct: 336 GLPKVAYIDLQKN-HIAIIQDQTFKFLEKLQTLDLRDNALTTI----HFIPSIPDIFLSG 390

Query: 192 SRLTTLEMLILDAQVMPRELFSLGLERNKIFLGDVWSWTGKYETSRTLKLKLDNRMYLE- 250
           ++L TL  + L A         + L  N++   D+  +  +    + L L  +       
Sbjct: 391 NKLVTLPKINLTAN-------LIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSG 443

Query: 251 HGIKMLLRRTEDLHLDKLNGLQNV-LHELDGEGFPRLKHLLV 291
                     E L L + N LQ     EL  + F  L HL V
Sbjct: 444 DQTPSENPSLEQLFLGE-NMLQLAWETELCWDVFEGLSHLQV 484

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 51.7 bits (124), Expect = 1e-07
 Identities = 40/243 (16%), Positives = 75/243 (30%), Gaps = 18/243 (7%)

Query: 49  IQELPEKL--ECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDV 106
           I+ +         +L+L  L S+   L I    F  +P+L++L L       L       
Sbjct: 36  IRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHP--DAF 93

Query: 107 ATVGVLKKLVIFSFRNSHIEQLPEEIGQLTRLKLLDLSTCSKLKSIRPN-VISNLPRLEE 165
             +  L +L ++    S           L  L  LDLS   +++S+  +     L  L+ 
Sbjct: 94  QGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKN-QIRSLYLHPSFGKLNSLKS 152

Query: 166 LYM-GNSFTHWEVE---GQNNASLAEL----NQLSRLTTLEMLILDAQVMPRELFSLGLE 217
           +    N                +L+      N L    +++            L  L + 
Sbjct: 153 IDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVS 212

Query: 218 RNKIFLGDVWSWTGKYETSRTLKLKLDNRMYLEHGIKMLLRRTEDLHLDKLNGLQNV-LH 276
            N   +    +       S++    L    ++  G        +D   +   GL    + 
Sbjct: 213 GNGWTV--DITGNFSNAISKSQAFSLILAHHIM-GAGFGFHNIKDPDQNTFAGLARSSVR 269

Query: 277 ELD 279
            LD
Sbjct: 270 HLD 272

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 47.1 bits (112), Expect = 5e-06
 Identities = 28/146 (19%), Positives = 51/146 (34%), Gaps = 5/146 (3%)

Query: 59  PKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKKLVIF 118
           P L++  L   + S    D      PSL+ L L          T         L  L + 
Sbjct: 426 PHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVL 485

Query: 119 SFRNSHIEQLPEEI-GQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYM-GNSFTHWE 176
              ++++  LP  +   LT L+ L L++  +L  +  N       LE L +  N      
Sbjct: 486 YLNHNYLNSLPPGVFSHLTALRGLSLNSN-RLTVLSHN--DLPANLEILDISRNQLLAPN 542

Query: 177 VEGQNNASLAELNQLSRLTTLEMLIL 202
            +   + S+ ++     +   E+   
Sbjct: 543 PDVFVSLSVLDITHNKFICECELSTF 568

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 41.3 bits (97), Expect = 3e-04
 Identities = 32/162 (19%), Positives = 59/162 (36%), Gaps = 18/162 (11%)

Query: 49  IQELPEKL--ECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNG------FHFPSLP 100
           + EL        PK+    L    ++ +I D  F+ +  LQ L L           PS+P
Sbjct: 326 LGELYSSNFYGLPKVAYIDLQKNHIA-IIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIP 384

Query: 101 STLGDVATVGVLKKLVIFS----FRNSHIEQLPEE--IGQLTRLKLLDLSTCSKLKSIRP 154
                   +  L K+ + +       + +E L     + ++  L++L L+  ++  S   
Sbjct: 385 DIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILN-QNRFSSCSG 443

Query: 155 NVI-SNLPRLEELYM-GNSFTHWEVEGQNNASLAELNQLSRL 194
           +   S  P LE+L++  N                 L+ L  L
Sbjct: 444 DQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVL 485

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 53.5 bits (129), Expect = 2e-08
 Identities = 28/187 (14%), Positives = 67/187 (35%), Gaps = 19/187 (10%)

Query: 49  IQELPEKL--ECPKLKLFFLFSEKLSLV-IPDLFFEGVPSLQVLSLNGFHFPSLPSTLGD 105
           I+++P+ +      +    +    L         F+G+  L  L ++      +P     
Sbjct: 135 IRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPK---- 189

Query: 106 VATVGVLKKLVIFSFRNSHIEQLPEEI-GQLTRLKLLDLSTCSKLKSIRPNVISNLPRLE 164
                + + L      ++ I+ +  E   + ++L  L L    +++ I    +S LP L 
Sbjct: 190 ----DLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHN-QIRMIENGSLSFLPTLR 244

Query: 165 ELYM-GNSFTHWEVEGQNNASLAEL----NQLSRLTTLEMLILDAQVMPRELFSLGLERN 219
           EL++  N  +       +   L  +    N ++++   +   +   V       + L  N
Sbjct: 245 ELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNN 304

Query: 220 KIFLGDV 226
            +   +V
Sbjct: 305 PVPYWEV 311

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 44.6 bits (106), Expect = 2e-05
 Identities = 21/132 (15%), Positives = 44/132 (33%), Gaps = 17/132 (12%)

Query: 49  IQELPEKL--ECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDV 106
           IQ +  +      KL    L   ++  +I +     +P+L+ L L+      +P+ L D 
Sbjct: 205 IQAIELEDLLRYSKLYRLGLGHNQIR-MIENGSLSFLPTLRELHLDNNKLSRVPAGLPD- 262

Query: 107 ATVGVLKKLVIFSFRNSHIEQLPEEI-------GQLTRLKLLDLSTCS-KLKSIRPNVIS 158
                LK L +     ++I ++            +      + L         ++P    
Sbjct: 263 -----LKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFR 317

Query: 159 NLPRLEELYMGN 170
            +     +  GN
Sbjct: 318 CVTDRLAIQFGN 329

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 39.6 bits (93), Expect = 9e-04
 Identities = 25/144 (17%), Positives = 49/144 (34%), Gaps = 26/144 (18%)

Query: 75  IPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKKLVIFSFRNSHIEQLPEEI-G 133
           I +  F  +  LQ L ++  H   +P          +   LV     ++ I ++P+ +  
Sbjct: 93  IHEKAFSPLRKLQKLYISKNHLVEIPP--------NLPSSLVELRIHDNRIRKVPKGVFS 144

Query: 134 QLTRLKLLDLST-CSKLKSIRPNVISNLPRLEELYM-GNSFTHWEVEGQNNASLAEL--- 188
            L  +  +++     +     P     L +L  L +     T   +      +L EL   
Sbjct: 145 GLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG--IPKDLPETLNELHLD 201

Query: 189 -NQLS--------RLTTLEMLILD 203
            N++         R + L  L L 
Sbjct: 202 HNKIQAIELEDLLRYSKLYRLGLG 225

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 53.3 bits (128), Expect = 3e-08
 Identities = 32/192 (16%), Positives = 70/192 (36%), Gaps = 14/192 (7%)

Query: 17  HMFNIQIISDL-REVFEDLMQKDPIAISHPCRDIQELPEKL--ECPKLKLFFLFSEKLSL 73
            +    ++  +  +VF +L +   I I     ++  +  +     P L+   + +  +  
Sbjct: 60  EISQNDVLEVIEADVFSNLPKLHEIRIEK-ANNLLYINPEAFQNLPNLQYLLISNTGIK- 117

Query: 74  VIPDLFFEGVPSLQVLSLNG-FHFPSLPSTLGDVATVGVLKKLVIFSFRNSHIEQLPEEI 132
            +PD+         +L +    +  ++       + VG+  + VI     + I+++    
Sbjct: 118 HLPDVHKIHSLQKVLLDIQDNINIHTIERN----SFVGLSFESVILWLNKNGIQEIHNSA 173

Query: 133 GQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYM-GNSFTHWEVEG-QNNASLAEL-- 188
              T+L  L+LS  + L+ +  +V         L +           G +N   L     
Sbjct: 174 FNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST 233

Query: 189 NQLSRLTTLEML 200
             L +L TLE L
Sbjct: 234 YNLKKLPTLEKL 245

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 42.5 bits (100), Expect = 1e-04
 Identities = 37/230 (16%), Positives = 73/230 (31%), Gaps = 43/230 (18%)

Query: 74  VIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKKLVIFSFRNSHIEQLPEEI- 132
           VI    F G   L+ + ++                             N  +E +  ++ 
Sbjct: 44  VIQKGAFSGFGDLEKIEISQ----------------------------NDVLEVIEADVF 75

Query: 133 GQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYM-GNSFTH-WEVEGQNNASLA--EL 188
             L +L  + +   + L  I P    NLP L+ L +      H  +V   ++      ++
Sbjct: 76  SNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDI 135

Query: 189 NQLSRLTTLEMLILDAQVMPRELFSLGLERNKIFLGDVWSWTGKYETSRTLKLKLDNRM- 247
                + T+E        +  E   L L +N I   ++ +          L L  +N + 
Sbjct: 136 QDNINIHTIERNSFVG--LSFESVILWLNKNGI--QEIHNSAFNGTQLDELNLSDNNNLE 191

Query: 248 YLEHGIKMLLRRTEDLHLDKLNGLQNVLHELDGEGFPRLKHLLVQNASEI 297
            L + +         L +      +  +H L   G   LK L  ++   +
Sbjct: 192 ELPNDVFHGASGPVILDIS-----RTRIHSLPSYGLENLKKLRARSTYNL 236

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 41.4 bits (97), Expect = 2e-04
 Identities = 24/145 (16%), Positives = 52/145 (35%), Gaps = 21/145 (14%)

Query: 85  SLQVLSLNGFHFPSLPSTLGDVATVGVLKKLVIFSFRNSHIEQLPEEI-GQLTRLKLLDL 143
           S +V          +PS         + +  +   F  + +  + +        L+ +++
Sbjct: 10  SNRVFLCQESKVTEIPS--------DLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEI 61

Query: 144 STCSKLKSIRPNVISNLPRLEELYMGNSFTHWEVEGQNNASLAELNQLSRLTTLEMLILD 203
           S    L+ I  +V SNLP+L E+ +  +         NN           L  L+ L++ 
Sbjct: 62  SQNDVLEVIEADVFSNLPKLHEIRIEKA---------NNLLYINPEAFQNLPNLQYLLIS 112

Query: 204 A---QVMPRELFSLGLERNKIFLGD 225
               + +P       L++  + + D
Sbjct: 113 NTGIKHLPDVHKIHSLQKVLLDIQD 137

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 53.2 bits (128), Expect = 3e-08
 Identities = 50/260 (19%), Positives = 89/260 (34%), Gaps = 39/260 (15%)

Query: 49  IQELPEKL--ECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDV 106
           I  +       C  L+   L S  ++  I +  F  + SL+ L L+  +  +L S     
Sbjct: 64  ITYISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYNYLSNLSS----- 117

Query: 107 ATVGV---LKKLVIFSFRNSHIEQLPEEI--GQLTRLKLLDLSTCSKLKSIRPNVISNLP 161
                   L  L   +   +  + L E      LT+L++L +        I+    + L 
Sbjct: 118 ---SWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLT 174

Query: 162 RLEELYM-GNSFTHWEVEGQNNASLAELNQLSRL-------TTLEMLILD--AQVMPREL 211
            LEEL +  +    +E +     SL  +  +S L         L  + +D  + V   EL
Sbjct: 175 FLEELEIDASDLQSYEPK-----SLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLEL 229

Query: 212 FSLGLERNKI--FLGDVWSWTGKYETSRTLKLKLDNRMYLEHGIKMLLRRTEDLHLDKLN 269
               L+            +   K  T R +K+  D  ++    +   +    +L      
Sbjct: 230 RDTDLDTFHFSELSTGETNSLIKKFTFRNVKIT-DESLFQVMKLLNQISGLLELEFS--- 285

Query: 270 GLQNVLHELDGEGFPRLKHL 289
             +N L  +    F RL  L
Sbjct: 286 --RNQLKSVPDGIFDRLTSL 303

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 52.4 bits (126), Expect = 5e-08
 Identities = 22/129 (17%), Positives = 54/129 (41%), Gaps = 11/129 (8%)

Query: 49  IQELPEKL--ECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSL-----NGFHFPSLPS 101
           +Q    K       +    L  ++   ++ ++F +   S++ L L     + FHF  L +
Sbjct: 186 LQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSELST 244

Query: 102 TLGDVATVGVLKKLVIFSFRNSHIEQLPEEIGQLTRLKLLDLSTCSKLKSIRPNVISNLP 161
             G+  ++            +  + Q+ + + Q++ L  L+ S   +LKS+   +   L 
Sbjct: 245 --GETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRN-QLKSVPDGIFDRLT 301

Query: 162 RLEELYMGN 170
            L+++++  
Sbjct: 302 SLQKIWLHT 310

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 53.1 bits (128), Expect = 4e-08
 Identities = 36/191 (18%), Positives = 65/191 (34%), Gaps = 27/191 (14%)

Query: 49  IQELPEKL--ECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDV 106
           +++LP  L     +++L  L   ++   I    F    ++Q L +       LP  +   
Sbjct: 57  MRKLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQN 115

Query: 107 ATVGVLKKLVIFSFRNSHIEQLPEEI-GQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEE 165
                +  L +     + +  LP  I     +L  L +S    L+ I  +       L+ 
Sbjct: 116 -----VPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNN-NLERIEDDTFQATTSLQN 169

Query: 166 LYM-GNSFTHWEVEGQNNASLAELN-------QLSRLTTLEMLILDA---QVMPRELF-- 212
           L +  N  TH  V+     SL   N        L+    +E L        V+   +   
Sbjct: 170 LQLSSNRLTH--VDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVE 227

Query: 213 --SLGLERNKI 221
              L L+ N +
Sbjct: 228 LTILKLQHNNL 238

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 50.8 bits (122), Expect = 2e-07
 Identities = 19/115 (16%), Positives = 39/115 (33%), Gaps = 8/115 (6%)

Query: 49  IQELPEKLECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVAT 108
           + +    L  P L    L   +L   I    F  +  L+ L ++     +L         
Sbjct: 238 LTDTAWLLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRLVALNLYGQP--- 293

Query: 109 VGVLKKLVIFSFRNSHIEQLPEEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRL 163
              +  L +    ++H+  +     Q  RL+ L L     + +++ +    L  L
Sbjct: 294 ---IPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHN-SIVTLKLSTHHTLKNL 344

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 48.1 bits (115), Expect = 1e-06
 Identities = 36/229 (15%), Positives = 68/229 (29%), Gaps = 52/229 (22%)

Query: 76  PDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKKLVIFSFRNSHIEQLPEEI-GQ 134
           P+                 H       +        L    I +F+NS + +LP  +   
Sbjct: 8   PEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDS 67

Query: 135 LTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEVEGQNNASLAELNQLSRL 194
             +++LL+L+   +++ I     +    +++LYMG           N       +    +
Sbjct: 68  FRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGF----------NAIRYLPPHVFQNV 116

Query: 195 TTLEMLILDA---QVMPRELFS-------LGLERNKIFLGDVWSWTGKYETSRTLKLKLD 244
             L +L+L+      +PR +F        L +  N +                       
Sbjct: 117 PLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNL----------------------- 153

Query: 245 NRMYLEHGIKMLLRRTEDLHLDKLNGLQNVLHELDGEGFPRLKHLLVQN 293
               +E          ++L L       N L  +D    P L H  V  
Sbjct: 154 --ERIEDDTFQATTSLQNLQLS-----SNRLTHVDLSLIPSLFHANVSY 195

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 53.2 bits (128), Expect = 4e-08
 Identities = 44/255 (17%), Positives = 81/255 (31%), Gaps = 23/255 (9%)

Query: 49  IQELPEK--LECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDV 106
           I  +       C  L++  L S +++  I    F  + SL+ L L+  H  SL S     
Sbjct: 38  ITYIGHGDLRACANLQVLILKSSRIN-TIEGDAFYSLGSLEHLDLSDNHLSSLSS----- 91

Query: 107 ATVGVLKKLVIFSFRNSHIEQLPE--EIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLE 164
           +  G L  L   +   +  + L        LT L+ L +        IR    + L  L 
Sbjct: 92  SWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLN 151

Query: 165 ELYM-GNSFTHWEVEG-QNNASLAELN-QLSRLTTLEMLILDAQVMPRELFSLGLERNKI 221
           EL +   S  +++ +  ++   +  L   LS    L  +  D       +  L L    +
Sbjct: 152 ELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADIL---SSVRYLELRDTNL 208

Query: 222 FLGDVWSWTGKYETSRTLKLKLDNRMYLEHGIKMLLR------RTEDLHLDKLNGLQ-NV 274
                        +S   KL     +  +     LL+         ++  D         
Sbjct: 209 ARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGD 268

Query: 275 LHELDGEGFPRLKHL 289
            +  + +    L  +
Sbjct: 269 FNPSESDVVSELGKV 283

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 46.6 bits (111), Expect = 6e-06
 Identities = 29/167 (17%), Positives = 55/167 (32%), Gaps = 26/167 (15%)

Query: 75  IPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKKLVIFSFRNSHIEQLPEEIG- 133
           +P  F + + SL+ L L+          L + A  G    L       +H+  + +    
Sbjct: 325 VPCSFSQHLKSLEFLDLSENLMVEEY--LKNSACKGAWPSLQTLVLSQNHLRSMQKTGEI 382

Query: 134 --QLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYM-GNSFTHWEVEGQNNASLAEL-- 188
              L  L  LD+S  +    + P+      ++  L +         V+     +L  L  
Sbjct: 383 LLTLKNLTSLDIS-RNTFHPM-PDSCQWPEKMRFLNLSSTGIR--VVKTCIPQTLEVLDV 438

Query: 189 --NQLS----RLTTLEMLIL--------DAQVMPRELFSLGLERNKI 221
             N L      L  L+ L +            +   L  + + RN++
Sbjct: 439 SNNNLDSFSLFLPRLQELYISRNKLKTLPDASLFPVLLVMKISRNQL 485

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 42.8 bits (101), Expect = 8e-05
 Identities = 18/96 (18%), Positives = 41/96 (42%), Gaps = 11/96 (11%)

Query: 75  IPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKKLVIFSFRNSHIEQLPEEIGQ 134
           I  +      +L+VL ++  +  S    L        L++L I     + ++ LP+    
Sbjct: 422 IRVVKTCIPQTLEVLDVSNNNLDSFSLFLPR------LQELYI---SRNKLKTLPDA-SL 471

Query: 135 LTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGN 170
              L ++ +S   +LKS+   +   L  L+++++  
Sbjct: 472 FPVLLVMKISRN-QLKSVPDGIFDRLTSLQKIWLHT 506

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 51.9 bits (125), Expect = 6e-08
 Identities = 28/169 (16%), Positives = 57/169 (33%), Gaps = 17/169 (10%)

Query: 59  PKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKKLVIF 118
             LK   L    +  +  +  F G+  L+ L     +   +     + +    L+ L+  
Sbjct: 78  TSLKYLDLSFNGVITMSSN--FLGLEQLEHLDFQHSNLKQMS----EFSVFLSLRNLIYL 131

Query: 119 SFRNSHIEQLPEEI-GQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYM-GNSFTHWE 176
              ++H       I   L+ L++L ++  S  ++  P++ + L  L  L +         
Sbjct: 132 DISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ-- 189

Query: 177 VEGQNNASLAELNQLS----RLTTLEMLILDAQVMPRELFSLGLERNKI 221
           +      SL+ L  L+       +L+            L  L    N I
Sbjct: 190 LSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCL---NSLQVLDYSLNHI 235

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 44.6 bits (106), Expect = 2e-05
 Identities = 29/161 (18%), Positives = 56/161 (34%), Gaps = 30/161 (18%)

Query: 75  IPDLFFEGVPSLQVLSL--NGFHFPSLPSTLGDVATVGVLKKLVIFSFRNSHIEQLPEEI 132
           +P   F+ +  L  LSL  NG  F    S             L       + +  +    
Sbjct: 43  LPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFG-----TTSLKYLDLSFNGVITMSSNF 97

Query: 133 GQLTRLKLLDLSTCSKLKSIRP-NVISNLPRLEELYMGNSFTHWEVEGQNNASLAELNQL 191
             L +L+ LD      LK +   +V  +L  L  L + +           +  +A     
Sbjct: 98  LGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISH----------THTRVAFNGIF 146

Query: 192 SRLTTLEMLILD----AQVMPRELFS-------LGLERNKI 221
           + L++LE+L +      +    ++F+       L L + ++
Sbjct: 147 NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL 187

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 52.4 bits (126), Expect = 7e-08
 Identities = 30/168 (17%), Positives = 58/168 (34%), Gaps = 16/168 (9%)

Query: 59  PKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKKLVIF 118
             L+   L    L+  IP      +  L VL L   +  ++         +  LK L I 
Sbjct: 152 NSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNINAIRD--YSFKRLYRLKVLEIS 208

Query: 119 SFRNSHIEQLPEEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYM-GNSFTHWEV 177
                +++ +         L  L ++ C  L ++    + +L  L  L +  N  +   +
Sbjct: 209 H--WPYLDTMTPNCLYGLNLTSLSITHC-NLTAVPYLAVRHLVYLRFLNLSYNPIST--I 263

Query: 178 EGQNNASLAELNQLS----RLTTLEMLILDAQVMPRELFSLGLERNKI 221
           EG     L  L ++     +L  +E        +   L  L +  N++
Sbjct: 264 EGSMLHELLRLQEIQLVGGQLAVVEPYAFRG--LNY-LRVLNVSGNQL 308

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 50.5 bits (121), Expect = 3e-07
 Identities = 35/188 (18%), Positives = 58/188 (30%), Gaps = 32/188 (17%)

Query: 59  PKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKKLVIF 118
           P L+   L    +S  +    F  + +L+ L L       +P           L  L   
Sbjct: 56  PHLEELELNENIVS-AVEPGAFNNLFNLRTLGLRSNRLKLIPL-----GVFTGLSNLTKL 109

Query: 119 SFRNSHIEQLPEEI-GQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYM-GNSFTHWE 176
               + I  L + +   L  LK L++     L  I     S L  LE+L +   + T   
Sbjct: 110 DISENKIVILLDYMFQDLYNLKSLEVGDN-DLVYISHRAFSGLNSLEQLTLEKCNLTSIP 168

Query: 177 VEG-QNNASLAEL----NQLS--------RLTTLEMLILD----AQVMPRELF------S 213
            E   +   L  L      ++        RL  L++L +        M           S
Sbjct: 169 TEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTS 228

Query: 214 LGLERNKI 221
           L +    +
Sbjct: 229 LSITHCNL 236

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 51.0 bits (123), Expect = 1e-07
 Identities = 35/178 (19%), Positives = 69/178 (38%), Gaps = 27/178 (15%)

Query: 49  IQELPEKLECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVAT 108
           I ++       KL   ++ + K++ +      + + +L+ L LN          + D++ 
Sbjct: 78  ITDISPLSNLVKLTNLYIGTNKITDISA---LQNLTNLRELYLNE-------DNISDISP 127

Query: 109 VGVLKKLVIFSFRNSHIEQLPEEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYM 168
           +  L K+   +   +H       +  +T L  L ++   K+K + P  I+NL  L  L +
Sbjct: 128 LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTES-KVKDVTP--IANLTDLYSLSL 184

Query: 169 G-NSFTHWEVEGQNNASLAEL----NQLSRLTTLEMLILDAQVMPRELFSLGLERNKI 221
             N          +  SL       NQ++ +T +  +          L SL +  NKI
Sbjct: 185 NYNQIEDIS-PLASLTSLHYFTAYVNQITDITPVANMT--------RLNSLKIGNNKI 233

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 47.9 bits (115), Expect = 1e-06
 Identities = 26/150 (17%), Positives = 55/150 (36%), Gaps = 23/150 (15%)

Query: 49  IQELPEKLECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVAT 108
           I ++       +L    + + K++ + P      +  L  L +       + +       
Sbjct: 211 ITDITPVANMTRLNSLKIGNNKITDLSP---LANLSQLTWLEIGTNQISDINA------- 260

Query: 109 VGVLKKLVIFSFRNSHIEQLPEEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYM 168
           V  L KL + +  ++ I  +   +  L++L  L L+   +L +    VI  L  L  L++
Sbjct: 261 VKDLTKLKMLNVGSNQISDISV-LNNLSQLNSLFLNNN-QLGNEDMEVIGGLTNLTTLFL 318

Query: 169 -GNSFTHWEVEGQNNASLAELNQLSRLTTL 197
             N  T           +  L  LS++ + 
Sbjct: 319 SQNHIT----------DIRPLASLSKMDSA 338

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 44.1 bits (105), Expect = 3e-05
 Identities = 29/130 (22%), Positives = 51/130 (39%), Gaps = 24/130 (18%)

Query: 75  IPDLF-FEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKKLVIFSFRNSHIEQLPEEIG 133
           I  +F    +       L         +++ DV T   L+ +         +  +   I 
Sbjct: 12  INQIFPDADLAEGIRAVLQK-------ASVTDVVTQEELESITKLVVAGEKVASIQG-IE 63

Query: 134 QLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEVEGQNNASLAELNQLSR 193
            LT L+ L+L+   ++  I P  +SNL +L  LY+G           N   + +++ L  
Sbjct: 64  YLTNLEYLNLNGN-QITDISP--LSNLVKLTNLYIGT----------NK--ITDISALQN 108

Query: 194 LTTLEMLILD 203
           LT L  L L+
Sbjct: 109 LTNLRELYLN 118

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 51.6 bits (124), Expect = 2e-07
 Identities = 37/153 (24%), Positives = 58/153 (37%), Gaps = 18/153 (11%)

Query: 49  IQELPEKLECPKLKLFFLFSEKLSLV-IPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVA 107
                 +++ P L+   L    LS          G  SL+ L L+     ++ S      
Sbjct: 337 GGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLG-- 394

Query: 108 TVGVLKKLVIFSFRNSHIEQLPEEI--GQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEE 165
               L++L    F++S+++Q+ E      L  L  LD+S     +     + + L  LE 
Sbjct: 395 ----LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT-HTRVAFNGIFNGLSSLEV 449

Query: 166 LYM-GNSFTHWEVEGQNNASLAELNQLSRLTTL 197
           L M GNSF       Q N       +L  LT L
Sbjct: 450 LKMAGNSF-------QENFLPDIFTELRNLTFL 475

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 50.1 bits (120), Expect = 4e-07
 Identities = 44/230 (19%), Positives = 77/230 (33%), Gaps = 22/230 (9%)

Query: 75  IPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKKLVIFSFRNSHIEQLPEEI-G 133
           +    F   P LQVL L+     ++            L  L       + I+ L      
Sbjct: 43  LGSYSFFSFPELQVLDLSRCEIQTIEDG-----AYQSLSHLSTLILTGNPIQSLALGAFS 97

Query: 134 QLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYM-GNSFTHWEVEG--QNNASLAEL-- 188
            L+ L+ L       L S+    I +L  L+EL +  N    +++     N  +L  L  
Sbjct: 98  GLSSLQKLVAVET-NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDL 156

Query: 189 --NQLSRLTTLEMLILDAQVMPRELFSLGLERNKIFLGDVWSWTGKYETSRTLKLKLDNR 246
             N++  +   ++ +L    MP    SL L  N +    +     K      L L+ +N 
Sbjct: 157 SSNKIQSIYCTDLRVL--HQMPLLNLSLDLSLNPM--NFIQPGAFKEIRLHKLTLR-NNF 211

Query: 247 --MYLEHGIKMLLRRTEDLHLD-KLNGLQNVLHELDGEGFPRLKHLLVQN 293
             + +       L   E   L       +  L + D      L +L ++ 
Sbjct: 212 DSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEE 261

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 48.9 bits (117), Expect = 1e-06
 Identities = 23/99 (23%), Positives = 45/99 (45%), Gaps = 10/99 (10%)

Query: 75  IPDLFFEGVPSLQVLSL--NGFHFPSLPSTLGDVATVGVLKKLVIFSFRNSHIEQLPEEI 132
             +  F G+ SL+VL +  N F    LP    +      L+ L         +EQL    
Sbjct: 436 AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE------LRNLTFLDLSQCQLEQLSPTA 489

Query: 133 -GQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGN 170
              L+ L++L++++  +LKS+   +   L  L+++++  
Sbjct: 490 FNSLSSLQVLNMASN-QLKSVPDGIFDRLTSLQKIWLHT 527

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 48.2 bits (115), Expect = 2e-06
 Identities = 31/244 (12%), Positives = 64/244 (26%), Gaps = 28/244 (11%)

Query: 49  IQELPEKL--ECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDV 106
           +  L          LK   +    +       +F  + +L+ L L+     S+     D+
Sbjct: 112 LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC--TDL 169

Query: 107 ATVGVLKKLVIF-SFRNSHIEQLPEEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEE 165
             +  +  L +      + +  +     +  RL  L L       ++    I  L  LE 
Sbjct: 170 RVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEV 229

Query: 166 LYMGNSFTHWEVEGQNNASLAELNQLSRLTTLEMLILDAQVMPRELFSLGLERNKIFLGD 225
                     E   + N    + + L  L  L +           L  L    + I    
Sbjct: 230 H----RLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFR-------LAYLDYYLDDII--- 275

Query: 226 VWSWTGKYETSRTLKLKLDNRMYLEHGIKMLLRRTEDLHLDKLNGLQNVLHELDGEGFPR 285
                            + +   +   I+ +   + +     L  +     +        
Sbjct: 276 ---------DLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKS 326

Query: 286 LKHL 289
           LK L
Sbjct: 327 LKRL 330

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 39.7 bits (93), Expect = 9e-04
 Identities = 31/213 (14%), Positives = 64/213 (30%), Gaps = 39/213 (18%)

Query: 23  IISDLREVFEDLMQKDPIAISHPCRDIQELPEKLECPKLKLFFLFSEKLSLVIPDLFFEG 82
            + D+ ++F  L      ++      I+ + +       +   L    ++          
Sbjct: 270 YLDDIIDLFNCLTNVSSFSLVS--VTIERVKDFSYNFGWQHLEL----VNCKFGQFPTLK 323

Query: 83  VPSLQVLSLNGFHFPSLPSTLGDVATVGVLKKLVIFSFRN---SHIEQLPEEIGQLTRLK 139
           + SL+ L+       +  S +        L  L          S      +     T LK
Sbjct: 324 LKSLKRLTFTSNKGGNAFSEVD-------LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLK 376

Query: 140 LLDLSTCSKLKSIRPNVISNLPRLEELYM-GNSFTHWEVEGQNNASLAELNQLSRLTTLE 198
            LDLS    + ++  +    L +LE L    ++             ++E +    L  L 
Sbjct: 377 YLDLSFN-GVITM-SSNFLGLEQLEHLDFQHSNLK----------QMSEFSVFLSLRNLI 424

Query: 199 MLILDA---QVMPRELFS-------LGLERNKI 221
            L +     +V    +F+       L +  N  
Sbjct: 425 YLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSF 457

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 51.1 bits (122), Expect = 2e-07
 Identities = 36/185 (19%), Positives = 67/185 (36%), Gaps = 19/185 (10%)

Query: 42  ISHPCRDIQELPEKLECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPS 101
           I    +D+    E +     K+    +  +   +P    +    +++L+LN      + +
Sbjct: 34  IDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDT 92

Query: 102 TLGDVATVGVLKKLVIFSFRNSHIEQLPEEIGQ-LTRLKLLDLSTCSKLKSIRPNVISNL 160
                        +       + I  LP  + Q +  L +L L     L S+   +  N 
Sbjct: 93  Y-----AFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN-DLSSLPRGIFHNT 146

Query: 161 PRLEELYM-GNSFTHWEVE-GQNNASLAELNQLS--RLTTLEMLILDAQVMPRELFSLGL 216
           P+L  L M  N+    E +  Q   SL  L  LS  RLT +++ ++        LF   +
Sbjct: 147 PKLTTLSMSNNNLERIEDDTFQATTSLQNLQ-LSSNRLTHVDLSLI------PSLFHANV 199

Query: 217 ERNKI 221
             N +
Sbjct: 200 SYNLL 204

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 45.3 bits (107), Expect = 1e-05
 Identities = 36/230 (15%), Positives = 68/230 (29%), Gaps = 52/230 (22%)

Query: 75  IPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKKLVIFSFRNSHIEQLPEEI-G 133
            P+                 H       +        L    I +F+NS + +LP  +  
Sbjct: 13  QPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLD 72

Query: 134 QLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEVEGQNNASLAELNQLSR 193
              +++LL+L+   +++ I     +    +++LYMG           N       +    
Sbjct: 73  SFRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGF----------NAIRYLPPHVFQN 121

Query: 194 LTTLEMLILDA---QVMPRELFS-------LGLERNKIFLGDVWSWTGKYETSRTLKLKL 243
           +  L +L+L+      +PR +F        L +  N +                      
Sbjct: 122 VPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNL---------------------- 159

Query: 244 DNRMYLEHGIKMLLRRTEDLHLDKLNGLQNVLHELDGEGFPRLKHLLVQN 293
                +E          ++L L       N L  +D    P L H  V  
Sbjct: 160 ---ERIEDDTFQATTSLQNLQLS-----SNRLTHVDLSLIPSLFHANVSY 201

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 44.1 bits (104), Expect = 3e-05
 Identities = 23/111 (20%), Positives = 39/111 (35%), Gaps = 10/111 (9%)

Query: 80  FEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKKLVIFSFRNSHIEQLPEEIGQLTRLK 139
               P L  + L+      +            +++L      N+ +  L      +  LK
Sbjct: 250 LLNYPGLVEVDLSYNELEKIMYH-----PFVKMQRLERLYISNNRLVALNLYGQPIPTLK 304

Query: 140 LLDLSTCSKLKSIRPNVISNLPRLEELYM-GNSFTHWEVEGQNNASLAELN 189
           +LDLS    L  +  N      RLE LY+  NS     ++   + +L  L 
Sbjct: 305 VLDLSHN-HLLHVERN-QPQFDRLENLYLDHNSIV--TLKLSTHHTLKNLT 351

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 50.5 bits (121), Expect = 2e-07
 Identities = 34/180 (18%), Positives = 60/180 (33%), Gaps = 42/180 (23%)

Query: 49  IQELPEKL--ECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDV 106
           +            +L    L   +L+  +       +P L  L L+     SLP      
Sbjct: 43  LYTFSLATLMPYTRLTQLNLDRAELT-KLQ--VDGTLPVLGTLDLSHNQLQSLPLLGQT- 98

Query: 107 ATVGVLKKLVIFSFRNSHIEQLPEEI-GQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEE 165
                L  L +     + +  LP      L  L+ L L   ++LK++ P +++  P+LE+
Sbjct: 99  -----LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG-NELKTLPPGLLTPTPKLEK 152

Query: 166 LYMGNSFTHWEVEGQNNASLAELNQLS--------RLTTLEMLILDA---QVMPRELFSL 214
           L + N                  N L+         L  L+ L+L       +P+  F  
Sbjct: 153 LSLAN------------------NNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGS 194

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 50.9 bits (122), Expect = 2e-07
 Identities = 30/128 (23%), Positives = 53/128 (41%), Gaps = 16/128 (12%)

Query: 49  IQELPEKL--ECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDV 106
           I  L + +      L+   L   +++  I D  F G+  L  L+L+     S+ S     
Sbjct: 287 IFALLKSVFSHFTDLEQLTLAQNEIN-KIDDNAFWGLTHLLKLNLSQNFLGSIDS----- 340

Query: 107 ATVGV---LKKLVIFSFRNSHIEQLPEEI-GQLTRLKLLDLSTCSKLKSIRPNVISNLPR 162
               +   L KL +     +HI  L ++    L  LK L L T  +LKS+   +   L  
Sbjct: 341 ---RMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTN-QLKSVPDGIFDRLTS 396

Query: 163 LEELYMGN 170
           L+++++  
Sbjct: 397 LQKIWLHT 404

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 48.6 bits (116), Expect = 1e-06
 Identities = 26/173 (15%), Positives = 54/173 (31%), Gaps = 29/173 (16%)

Query: 17  HMFNIQIISDLREVFEDLMQKDPI-----------AISHPCRDIQELPE----KLECPKL 61
            +        + + F D +    I             S    + ++        LE   +
Sbjct: 218 DLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGV 277

Query: 62  KLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGV---LKKLVIF 118
           K   L   K+   +    F     L+ L+L       +               L  L+  
Sbjct: 278 KTCDLSKSKIF-ALLKSVFSHFTDLEQLTLAQNEINKIDD--------NAFWGLTHLLKL 328

Query: 119 SFRNSHIEQLPEEI-GQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGN 170
           +   + +  +   +   L +L++LDLS    ++++       LP L+EL +  
Sbjct: 329 NLSQNFLGSIDSRMFENLDKLEVLDLSYN-HIRALGDQSFLGLPNLKELALDT 380

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 43.6 bits (103), Expect = 4e-05
 Identities = 34/181 (18%), Positives = 57/181 (31%), Gaps = 38/181 (20%)

Query: 49  IQELPEKL--ECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDV 106
           I EL E        L+   +  +   LVI +  F G+ SL +L L+   F  L +     
Sbjct: 42  IAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLET----- 96

Query: 107 ATVGVLKKLVIFSFRNSHIEQLPEEIGQLTRLKLLDLSTCSKLKS--IRPNVISNLPRLE 164
              G                        L  L++L L+ C  L    +  N    L  LE
Sbjct: 97  ---GAFNG--------------------LANLEVLTLTQC-NLDGAVLSGNFFKPLTSLE 132

Query: 165 ELYM-GNSFTHWEVEG--QNNASLAELN-QLSRLTTLEMLILDAQVMPRELFSLGLERNK 220
            L +  N+    +      N      L+   +++ ++    L      +    L L    
Sbjct: 133 MLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQ-GKHFTLLRLSSIT 191

Query: 221 I 221
           +
Sbjct: 192 L 192

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 50.0 bits (120), Expect = 3e-07
 Identities = 18/137 (13%), Positives = 41/137 (29%), Gaps = 14/137 (10%)

Query: 59  PKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKKLVIF 118
            +++   L   ++  V          +L+ L+L       +   +          KL   
Sbjct: 144 SRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV-------FAKLKTL 196

Query: 119 SFRNSHIEQLPEEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYM-GNSFTHWEV 177
              ++ +  +  E      +  + L    KL  I    +     LE   + GN F     
Sbjct: 197 DLSSNKLAFMGPEFQSAAGVTWISLRNN-KLVLI-EKALRFSQNLEHFDLRGNGFHC--- 251

Query: 178 EGQNNASLAELNQLSRL 194
            G      ++  ++  +
Sbjct: 252 -GTLRDFFSKNQRVQTV 267

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 31/216 (14%), Positives = 69/216 (31%), Gaps = 35/216 (16%)

Query: 27  LREVFEDLMQKDPIAISHPCRDIQELPEKL--ECPKLKLFFLFSEKLSLVIPDLFFEGVP 84
           + E+ ++  +     ++     +++    L      +K   L    LS  I         
Sbjct: 2   IHEIKQNGNRYKIEKVTD--SSLKQALASLRQSAWNVKELDLSGNPLS-QISAADLAPFT 58

Query: 85  SLQVLSLNGFHFPSLPSTLG------------DVATVGVLKKLVIFSFRNSHIEQLPEEI 132
            L++L+L+                         V  + V   +      N++I ++    
Sbjct: 59  KLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSR 118

Query: 133 GQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYM-GNSFTH--WEVEGQNNASLAEL- 188
           GQ    K + L+   K+  +R        R++ L +  N      +     ++ +L  L 
Sbjct: 119 GQG--KKNIYLANN-KITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLN 175

Query: 189 ---NQLSRLTTLEMLILDAQVMPRELFSLGLERNKI 221
              N +  +    +          +L +L L  NK+
Sbjct: 176 LQYNFIYDVKGQVVF--------AKLKTLDLSSNKL 203

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 50.3 bits (121), Expect = 3e-07
 Identities = 38/178 (21%), Positives = 68/178 (38%), Gaps = 28/178 (15%)

Query: 49  IQELPEKLECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVAT 108
           + ++    +   L+     + ++S + P      + +L  LSLNG       + L D+ T
Sbjct: 189 VSDISVLAKLTNLESLIATNNQISDITP---LGILTNLDELSLNG-------NQLKDIGT 238

Query: 109 VGVLKKLVIFSFRNSHIEQLPEEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYM 168
           +  L  L      N+ I  L   +  LT+L  L L    ++ +I P  ++ L  L  L +
Sbjct: 239 LASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGAN-QISNISP--LAGLTALTNLEL 294

Query: 169 -GNSFTHWEVEGQNNASLAEL----NQLSRLTTLEMLILDAQVMPRELFSLGLERNKI 221
             N          N  +L  L    N +S ++ +  L         +L  L    NK+
Sbjct: 295 NENQLEDIS-PISNLKNLTYLTLYFNNISDISPVSSL--------TKLQRLFFYNNKV 343

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 46.5 bits (111), Expect = 5e-06
 Identities = 27/166 (16%), Positives = 56/166 (33%), Gaps = 26/166 (15%)

Query: 49  IQELPEKLECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVAT 108
           I  +        L    L   +L  + P      + +L  L+L   +   +         
Sbjct: 277 ISNISPLAGLTALTNLELNENQLEDISP---ISNLKNLTYLTLYFNNISDISP------- 326

Query: 109 VGVLKKLVIFSFRNSHIEQLPEEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYM 168
           V  L KL    F N+ +  +   +  LT +  L      ++  + P  ++NL R+ +L +
Sbjct: 327 VSSLTKLQRLFFYNNKVSDVSS-LANLTNINWLSAGHN-QISDLTP--LANLTRITQLGL 382

Query: 169 -GNSFTHWEVEGQNNASLAEL-----------NQLSRLTTLEMLIL 202
              ++T+  V  + N S+                +S   +     +
Sbjct: 383 NDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDI 428

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 46.5 bits (111), Expect = 5e-06
 Identities = 43/179 (24%), Positives = 75/179 (41%), Gaps = 31/179 (17%)

Query: 49  IQELPEKLECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVAT 108
           I ++        L    LF+ +++ + P    + + +L  L L+        +T+ D++ 
Sbjct: 102 IADITPLANLTNLTGLTLFNNQITDIDP---LKNLTNLNRLELSS-------NTISDISA 151

Query: 109 VGVLKKLVIFSFRNSHIEQLPEEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYM 168
           +  L  L   SF N   +   + +  LT L+ LD+S+  K+  I  +V++ L  LE L  
Sbjct: 152 LSGLTSLQQLSFGNQVTD--LKPLANLTTLERLDISSN-KVSDI--SVLAKLTNLESLIA 206

Query: 169 G-NSFTHWEVEG-QNNASLAEL----NQLSRLTTLEMLILDAQVMPRELFSLGLERNKI 221
             N  +  ++       +L EL    NQL  + TL  L          L  L L  N+I
Sbjct: 207 TNNQIS--DITPLGILTNLDELSLNGNQLKDIGTLASL--------TNLTDLDLANNQI 255

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 44.6 bits (106), Expect = 2e-05
 Identities = 25/130 (19%), Positives = 47/130 (36%), Gaps = 24/130 (18%)

Query: 75  IPDLF-FEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKKLVIFSFRNSHIEQLPEEIG 133
           I  +F    +       L         + + D  +   L ++         I+ + + + 
Sbjct: 14  INQIFTDTALAEKMKTVLGK-------TNVTDTVSQTDLDQVTTLQADRLGIKSI-DGVE 65

Query: 134 QLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEVEGQNNASLAELNQLSR 193
            L  L  ++ S   +L  I P  + NL +L ++ M N          N   +A++  L+ 
Sbjct: 66  YLNNLTQINFSNN-QLTDITP--LKNLTKLVDILMNN----------NQ--IADITPLAN 110

Query: 194 LTTLEMLILD 203
           LT L  L L 
Sbjct: 111 LTNLTGLTLF 120

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 50.1 bits (119), Expect = 5e-07
 Identities = 40/203 (19%), Positives = 77/203 (37%), Gaps = 48/203 (23%)

Query: 20  NIQIISDLREVFEDLMQKDPIAISHPCRDIQELPEKLECPKLKLFFLFSEKLSLVIPDL- 78
            I+ I    + F + ++ +   +    + + +   + E   +      +  +      + 
Sbjct: 10  PIKQIFPD-DAFAETIKDN---LKK--KSVTDAVTQNELNSIDQIIANNSDIK----SVQ 59

Query: 79  FFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKKLVIFSFRNSHIEQLPEEIGQLTRL 138
             + +P++  L LNG         L D+  +  LK L       + I+ L   +  L +L
Sbjct: 60  GIQYLPNVTKLFLNGNK-------LTDIKPLTNLKNLGWLFLDENKIKDL-SSLKDLKKL 111

Query: 139 KLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEVEGQNNASLAELNQLSRLTTLE 198
           K L L     +  I    + +LP+LE LY+GN                  N+++ +T L 
Sbjct: 112 KSLSLEHN-GISDING--LVHLPQLESLYLGN------------------NKITDITVLS 150

Query: 199 MLILDAQVMPRELFSLGLERNKI 221
            L         +L +L LE N+I
Sbjct: 151 RL--------TKLDTLSLEDNQI 165

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 44.7 bits (105), Expect = 2e-05
 Identities = 32/157 (20%), Positives = 65/157 (41%), Gaps = 26/157 (16%)

Query: 49  IQELPEKLECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVAT 108
           + ++        L   FL   K+  +      + +  L+ LSL         + + D+  
Sbjct: 77  LTDIKPLTNLKNLGWLFLDENKIKDLSS---LKDLKKLKSLSLEH-------NGISDING 126

Query: 109 VGVLKKLVIFSFRNSHIEQLPEEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYM 168
           +  L +L      N+ I  +   + +LT+L  L L    ++  I P  ++ L +L+ LY+
Sbjct: 127 LVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDN-QISDIVP--LAGLTKLQNLYL 182

Query: 169 GNSFTHWEVEGQNNASLAELNQLSRLTTLEMLILDAQ 205
                       N+  +++L  L+ L  L++L L +Q
Sbjct: 183 SK----------NH--ISDLRALAGLKNLDVLELFSQ 207

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 48.8 bits (117), Expect = 6e-07
 Identities = 34/163 (20%), Positives = 59/163 (36%), Gaps = 30/163 (18%)

Query: 84  PSLQVLSLNGFHFPSLPSTLGDVATVGVLKKLVIFSFRNSHIEQLPEEI-GQLTRLKLLD 142
            + Q + L+G     +P+     A+    + L I    ++ + ++       L  L+ LD
Sbjct: 32  AASQRIFLHGNRISHVPA-----ASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLD 86

Query: 143 LSTCSKLKSIRPNVISNLPRLEELYM-GNSFTHWEVEG-QNNASLAEL----NQLSR--- 193
           LS  ++L+S+ P     L RL  L++             +  A+L  L    N L     
Sbjct: 87  LSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPD 146

Query: 194 -----LTTLEMLILDA---QVMPRELFS-------LGLERNKI 221
                L  L  L L       +P   F        L L +N++
Sbjct: 147 DTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRV 189

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 48.1 bits (115), Expect = 1e-06
 Identities = 35/147 (23%), Positives = 51/147 (34%), Gaps = 18/147 (12%)

Query: 58  CPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKKLVI 117
             +L    L    L   +    F G+ +LQ L L      +LP       T   L  L  
Sbjct: 104 LGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQALPD-----DTFRDLGNLTH 157

Query: 118 FSFRNSHIEQLPEEI-GQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWE 176
                + I  +PE     L  L  L L    ++  + P+   +L RL  LY+        
Sbjct: 158 LFLHGNRISSVPERAFRGLHSLDRLLLHQN-RVAHVHPHAFRDLGRLMTLYLFA------ 210

Query: 177 VEGQNNASLAELNQLSRLTTLEMLILD 203
               NN S      L+ L  L+ L L+
Sbjct: 211 ----NNLSALPTEALAPLRALQYLRLN 233

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 45.8 bits (109), Expect = 7e-06
 Identities = 28/160 (17%), Positives = 49/160 (30%), Gaps = 22/160 (13%)

Query: 59  PKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPS-TLGDVATVGVLKKLVI 117
             L+   L        +    F G+  L  L L+      L             L  L  
Sbjct: 80  ALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRG------LAALQY 133

Query: 118 FSFRNSHIEQLPEEI-GQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWE 176
              +++ ++ LP++    L  L  L L   +++ S+       L  L+ L +        
Sbjct: 134 LYLQDNALQALPDDTFRDLGNLTHLFLHG-NRISSVPERAFRGLHSLDRLLLHQ------ 186

Query: 177 VEGQNNASLAELNQLSRLTTLEMLILDA---QVMPRELFS 213
               N  +    +    L  L  L L A     +P E  +
Sbjct: 187 ----NRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALA 222

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 49.1 bits (117), Expect = 7e-07
 Identities = 28/152 (18%), Positives = 57/152 (37%), Gaps = 29/152 (19%)

Query: 84  PSLQVLSLNGFHFPSLPSTLGDVATVGVLKKLVIFSFRNSHIEQLPEEI-GQLTRLKLLD 142
               +L L+  +   L +   +      L  L      ++H+  +  E    +  L+ LD
Sbjct: 39  SYTALLDLSHNNLSRLRA---EWTPTR-LTNLHSLLLSHNHLNFISSEAFVPVPNLRYLD 94

Query: 143 LSTCSKLKSIRPNVISNLPRLEELYMGN---------SFTHWEVEGQNNASLAELNQLS- 192
           LS+   L ++   + S+L  LE L + N         +F            +A+L +L  
Sbjct: 95  LSSN-HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFED----------MAQLQKLYL 143

Query: 193 ---RLTTLEMLILDAQVMPRELFSLGLERNKI 221
              +++   + ++       +L  L L  NK+
Sbjct: 144 SQNQISRFPVELIKDGNKLPKLMLLDLSSNKL 175

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 42.5 bits (100), Expect = 8e-05
 Identities = 27/128 (21%), Positives = 49/128 (38%), Gaps = 19/128 (14%)

Query: 49  IQELPEKL--ECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDV 106
           +  +  +     P L+   L S  L   + +  F  + +L+VL L   H   +       
Sbjct: 76  LNFISSEAFVPVPNLRYLDLSSNHLH-TLDEFLFSDLQALEVLLLYNNHIVVVDR----- 129

Query: 107 ATVGV---LKKLVIFSFRNSHIEQLPEEI----GQLTRLKLLDLSTCSKLKSIRPNVISN 159
                   + +L       + I + P E+     +L +L LLDLS+ +KLK +    +  
Sbjct: 130 ---NAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSS-NKLKKLPLTDLQK 185

Query: 160 LPRLEELY 167
           LP   +  
Sbjct: 186 LPAWVKNG 193

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 48.8 bits (117), Expect = 7e-07
 Identities = 36/176 (20%), Positives = 57/176 (32%), Gaps = 29/176 (16%)

Query: 49  IQELPEKL--ECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDV 106
           ++ L        P+L++  L   ++   I D  ++ +  L  L L G    SL       
Sbjct: 40  LRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSG 98

Query: 107 ATVGVLKKLVIFSFRNSHIEQLPEEI-GQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEE 165
                L  L       +++  L     G L  LK L+++         P   SNL  LE 
Sbjct: 99  -----LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEH 153

Query: 166 LYMGNSFTHWEVEGQNNASLAELNQLSRLTTLEMLILDAQVMPRELFSLGLERNKI 221
           L + +          N         L  L  + +L L          SL L  N +
Sbjct: 154 LDLSS----------NKIQSIYCTDLRVLHQMPLLNL----------SLDLSLNPM 189

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 39.2 bits (92), Expect = 8e-04
 Identities = 22/128 (17%), Positives = 47/128 (36%), Gaps = 12/128 (9%)

Query: 49  IQELPEKL--ECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDV 106
           +  L          LK   +    +       +F  + +L+ L L+     S+  T   V
Sbjct: 112 LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRV 171

Query: 107 ATVGVLKKLVIFSFR----NSHIEQLPEEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPR 162
                L ++ + +       + +  +     +  RLK L L T  +LKS+   +   L  
Sbjct: 172 -----LHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTN-QLKSVPDGIFDRLTS 225

Query: 163 LEELYMGN 170
           L+++++  
Sbjct: 226 LQKIWLHT 233

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.5 bits (117), Expect = 9e-07
 Identities = 53/340 (15%), Positives = 104/340 (30%), Gaps = 80/340 (23%)

Query: 2   HDVVHDIAVSTARDKHMFNIQIISDLREVF-EDLMQKD------PIAISHPCRDIQELPE 54
           H   H +   T   ++ +   I+S   + F ++   KD       I        I    +
Sbjct: 1   HHHHHHMDFETGEHQYQYK-DILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKD 59

Query: 55  KLECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHF-----------PSLPSTL 103
            +    L+LF+    K   ++   F E V     L +N + F           PS+ + +
Sbjct: 60  AVS-GTLRLFWTLLSKQEEMV-QKFVEEV-----LRIN-YKFLMSPIKTEQRQPSMMTRM 111

Query: 104 GDVATVGVLKKLVIFSFRNSHIEQLPEEIGQLTRLKLLDLSTCSKL---------KSI-R 153
             +     L       F   ++ +  +   +L R  LL+L     +         K+   
Sbjct: 112 Y-IEQRDRLYNDNQ-VFAKYNVSR-LQPYLKL-RQALLELRPAKNVLIDGVLGSGKTWVA 167

Query: 154 PNVISNLPRLEELYMGNSFTHWEVEGQNNASLAELNQLSRL---------------TTLE 198
            +V  +     ++        W      N+    L  L +L               + ++
Sbjct: 168 LDVCLSYKVQCKMDFK---IFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIK 224

Query: 199 MLILDAQVMPRELFSL-GLERNKIFLGDVWSWTGKYETSRTLKLKLDNRMYLEHGIKMLL 257
           + I   Q   R L      E   + L +V +       ++                K+LL
Sbjct: 225 LRIHSIQAELRRLLKSKPYENCLLVLLNVQN-------AKAWN-------AFNLSCKILL 270

Query: 258 RRTEDLHL-DKLNGLQ----NVLHELDGEGFPRLKHLLVQ 292
             T    + D L+       ++ H         +K LL++
Sbjct: 271 -TTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLK 309

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 48.8 bits (117), Expect = 9e-07
 Identities = 34/164 (20%), Positives = 58/164 (35%), Gaps = 30/164 (18%)

Query: 49  IQELPEKL-ECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVA 107
           + ELPE       L +     + LS + P         L+ L ++      LP       
Sbjct: 103 LTELPELPQSLKSLLVDNNNLKALSDLPP--------LLEYLGVSNNQLEKLPE------ 148

Query: 108 TVGVLKKLVIFSFRNSHIEQLPEEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELY 167
            +     L I    N+ +++LP+    L  +   +    ++L+ +    + NLP L  +Y
Sbjct: 149 -LQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGN----NQLEELPE--LQNLPFLTAIY 201

Query: 168 M-GNSFTHWEVEGQN-------NASLAELNQLSRLTTLEMLILD 203
              NS         +       N  L EL +L  L  L  +  D
Sbjct: 202 ADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYAD 245

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 46.1 bits (110), Expect = 7e-06
 Identities = 34/160 (21%), Positives = 55/160 (34%), Gaps = 24/160 (15%)

Query: 49  IQELPEKLECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVAT 108
           ++ELPE    P L   +  +  L  +          SL+ +         LP        
Sbjct: 185 LEELPELQNLPFLTAIYADNNSLKKLPDLPL-----SLESIVAGNNILEELPE------- 232

Query: 109 VGVLKKLVIFSFRNSHIEQLPEEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYM 168
           +  L  L      N+ ++ LP+    L  L + D      L  + P +  +L  L+    
Sbjct: 233 LQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDN----YLTDL-PELPQSLTFLDVSE- 286

Query: 169 GNSFTHWEVEGQN----NASLAELNQL-SRLTTLEMLILD 203
            N F+       N    NAS  E+  L     +LE L + 
Sbjct: 287 -NIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVS 325

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 44.6 bits (106), Expect = 2e-05
 Identities = 34/196 (17%), Positives = 63/196 (32%), Gaps = 50/196 (25%)

Query: 46  CRDIQELPEKL-ECPKLKLFFLFSEKLSLVIPDLFFEGV------------PSLQVLSLN 92
             ++ E+P +         ++    +     P    E                   L LN
Sbjct: 20  SSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELN 79

Query: 93  GFHFPSLPSTLGDVATVGVLKKLVIFSFRNSHIEQLPEEIGQLTRLKLLDLSTCSKLKSI 152
                SLP           L+ LV      + + +LPE    L  L + + +        
Sbjct: 80  NLGLSSLPELPPH------LESLVA---SCNSLTELPELPQSLKSLLVDNNNL------- 123

Query: 153 RPNVISNLPR-LEELYMGNSFTHWEVEGQNNASLAELNQLSRLTTLEMLILDA---QVMP 208
               +S+LP  LE L +            +N  L +L +L   + L+++ +D    + +P
Sbjct: 124 --KALSDLPPLLEYLGV------------SNNQLEKLPELQNSSFLKIIDVDNNSLKKLP 169

Query: 209 RELFSL---GLERNKI 221
               SL       N++
Sbjct: 170 DLPPSLEFIAAGNNQL 185

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 47.3 bits (113), Expect = 1e-06
 Identities = 21/100 (21%), Positives = 38/100 (38%), Gaps = 13/100 (13%)

Query: 75  IPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGV---LKKLVIFSFRNSHIEQLPEE 131
           IP   F     L+ + L+      L               L+ L       + I +LP+ 
Sbjct: 47  IPPGAFSPYKKLRRIDLSNNQISELAP--------DAFQGLRSLNSLVLYGNKITELPKS 98

Query: 132 I-GQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGN 170
           +   L  L+LL L+  +K+  +R +   +L  L  L + +
Sbjct: 99  LFEGLFSLQLLLLNA-NKINCLRVDAFQDLHNLNLLSLYD 137

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 47.9 bits (114), Expect = 2e-06
 Identities = 20/166 (12%), Positives = 46/166 (27%), Gaps = 16/166 (9%)

Query: 59  PKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKKLVIF 118
            +++   L   ++  V          +L+ L+L       +   +          KL   
Sbjct: 144 SRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV-------FAKLKTL 196

Query: 119 SFRNSHIEQLPEEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYM-GNSFTHWEV 177
              ++ +  +  E      +  + L    KL  I    +     LE   + GN F     
Sbjct: 197 DLSSNKLAFMGPEFQSAAGVTWISLRNN-KLVLI-EKALRFSQNLEHFDLRGNGFHC--- 251

Query: 178 EGQNNASLAELNQLSRLT--TLEMLILDAQVMPRELFSLGLERNKI 221
            G      ++  ++  +   T++ L    +                
Sbjct: 252 -GTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCC 296

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 42.9 bits (101), Expect = 9e-05
 Identities = 32/215 (14%), Positives = 66/215 (30%), Gaps = 33/215 (15%)

Query: 27  LREVFEDLMQKDPIAISHPCRDIQELPEKL--ECPKLKLFFLFSEKLSLVIPDLFFEGVP 84
           + E+ ++  +     ++     +++    L      +K   L    LS  I         
Sbjct: 2   IHEIKQNGNRYKIEKVTD--SSLKQALASLRQSAWNVKELDLSGNPLS-QISAADLAPFT 58

Query: 85  SLQVLSLNGFHFPSLPSTLG------------DVATVGVLKKLVIFSFRNSHIEQLPEEI 132
            L++L+L+                         V  + V   +      N++I ++    
Sbjct: 59  KLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSR 118

Query: 133 GQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYM-GNSFTHWEVEGQNNASLAELNQL 191
           GQ    K + L+   K+  +R        R++ L +  N                     
Sbjct: 119 GQG--KKNIYLANN-KITMLRDLDEGCRSRVQYLDLKLNEIDTVNFA-------ELAASS 168

Query: 192 SRLTTL-----EMLILDAQVMPRELFSLGLERNKI 221
             L  L      +  +  QV+  +L +L L  NK+
Sbjct: 169 DTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKL 203

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 42.1 bits (99), Expect = 1e-04
 Identities = 16/138 (11%), Positives = 38/138 (27%), Gaps = 10/138 (7%)

Query: 58  CPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKKLVI 117
              L+   L    +  V   + F     L+ L L+      +               +  
Sbjct: 168 SDTLEHLNLQYNFIYDVKGQVVF---AKLKTLDLSSNKLAFMGPEFQS------AAGVTW 218

Query: 118 FSFRNSHIEQLPEEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEV 177
            S RN+ +  + + +     L+  DL           +  S   R++ +    +      
Sbjct: 219 ISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAK-QTVKKLTG 277

Query: 178 EGQNNASLAELNQLSRLT 195
           + +   ++  L       
Sbjct: 278 QNEEECTVPTLGHYGAYC 295

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 47.6 bits (113), Expect = 3e-06
 Identities = 15/112 (13%), Positives = 46/112 (41%), Gaps = 8/112 (7%)

Query: 59  PKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKKLVIF 118
             L+   +    +S            SL  L+++                  +  ++ + 
Sbjct: 374 KSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFR-------CLPPRIKVL 426

Query: 119 SFRNSHIEQLPEEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGN 170
              ++ I+ +P+++ +L  L+ L++++  +LKS+   +   L  L+++++  
Sbjct: 427 DLHSNKIKSIPKQVVKLEALQELNVASN-QLKSVPDGIFDRLTSLQKIWLHT 477

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 41.8 bits (98), Expect = 2e-04
 Identities = 22/154 (14%), Positives = 50/154 (32%), Gaps = 17/154 (11%)

Query: 74  VIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKKLVIFSFRNSHIEQLPEEIG 133
           ++  L    +     L  +                   L +L     + + +++L +   
Sbjct: 314 MVHMLCPSKISPFLHLDFSNNLLTDTVFENCGH-----LTELETLILQMNQLKELSKIAE 368

Query: 134 ---QLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYM-GNSFTHWEVEGQNNASLAELN 189
              Q+  L+ LD+S  S     +    S    L  L M  N  T   +       +  L+
Sbjct: 369 MTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTD-TIFRCLPPRIKVLD 427

Query: 190 QLS--RLTTLEMLILDAQVMPRELFSLGLERNKI 221
            L   ++ ++   ++  +     L  L +  N++
Sbjct: 428 -LHSNKIKSIPKQVVKLE----ALQELNVASNQL 456

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 47.4 bits (112), Expect = 3e-06
 Identities = 22/92 (23%), Positives = 38/92 (41%), Gaps = 14/92 (15%)

Query: 112 LKKLVIFSFRNSHIEQLPEEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNS 171
           L  +      ++ +  LP  +  L  L++L  S    L+++    ++NLPRL+EL + N 
Sbjct: 462 LLLVTHLDLSHNRLRALPPALAALRCLEVLQASDN-ALENVDG--VANLPRLQELLLCN- 517

Query: 172 FTHWEVEGQNN-ASLAELNQLSRLTTLEMLIL 202
                    N     A +  L     L +L L
Sbjct: 518 ---------NRLQQSAAIQPLVSCPRLVLLNL 540

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 46.8 bits (111), Expect = 4e-06
 Identities = 25/116 (21%), Positives = 49/116 (42%), Gaps = 18/116 (15%)

Query: 60  KLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSL--NGFH---FPSLPSTLGDVATVGVLKK 114
            L+   +    L+    D       S+ VL+L  N      F  LP  +         K 
Sbjct: 404 SLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKV---------KV 454

Query: 115 LVIFSFRNSHIEQLPEEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGN 170
           L      N+ I  +P+++  L  L+ L++++ ++LKS+   V   L  L+ +++ +
Sbjct: 455 L---DLHNNRIMSIPKDVTHLQALQELNVAS-NQLKSVPDGVFDRLTSLQYIWLHD 506

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 41.0 bits (96), Expect = 3e-04
 Identities = 33/256 (12%), Positives = 77/256 (30%), Gaps = 24/256 (9%)

Query: 49  IQELPEK--LECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDV 106
           I EL         +L++  L   ++   +    F     L+ L ++     ++       
Sbjct: 64  ISELRMPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSHNRLQNISC----- 117

Query: 107 ATVGVLKKLVIFSFRNSHIEQLPE--EIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLE 164
                +  L       +  + LP   E G LT+L  L LS  +K + +    +++   L 
Sbjct: 118 ---CPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSA-AKFRQLDLLPVAH---LH 170

Query: 165 ELYMGNSFTHWEVEGQNNASLAELN------QLSRLTTLEMLILDAQVMPRELFSLGLER 218
              +      + ++G    SL   N           +   + +  +      L    ++ 
Sbjct: 171 LSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKL 230

Query: 219 NKIFLGDVWSWTGKYET-SRTLKLKLDNRMYLEHGIKMLLRRTEDLHLDKLNGLQNVLHE 277
           N      + ++  +       L + L +          L +      ++ LN     + E
Sbjct: 231 NDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITE 290

Query: 278 LDGEGFPRLKHLLVQN 293
                        +++
Sbjct: 291 RIDREEFTYSETALKS 306

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 46.2 bits (110), Expect = 5e-06
 Identities = 37/150 (24%), Positives = 58/150 (38%), Gaps = 36/150 (24%)

Query: 75  IPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKKLVIFSFRNSHIEQLPEEI-G 133
           + D  F G+  L  L+L+     +L + + D      L +L      N+ +  LP  +  
Sbjct: 50  LSDATFRGLTKLTWLNLDYNQLQTLSAGVFDD-----LTELGTLGLANNQLASLPLGVFD 104

Query: 134 QLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEVEGQNNASLAELNQLS- 192
            LT+L  L L   ++LKS+   V   L +L+EL +                    NQL  
Sbjct: 105 HLTQLDKLYLGG-NQLKSLPSGVFDRLTKLKELRLNT------------------NQLQS 145

Query: 193 -------RLTTLEMLILDA---QVMPRELF 212
                  +LT L+ L L     Q +P   F
Sbjct: 146 IPAGAFDKLTNLQTLSLSTNQLQSVPHGAF 175

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 46.5 bits (110), Expect = 6e-06
 Identities = 26/137 (18%), Positives = 48/137 (35%), Gaps = 10/137 (7%)

Query: 49  IQELPEKLECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVAT 108
           +  LPE      L++  + + +L+  +P+L      SL+ L ++     SLP+       
Sbjct: 152 LTMLPELP--TSLEVLSVRNNQLT-FLPEL----PESLEALDVSTNLLESLPAVPVRN-- 202

Query: 109 VGVLKKLVIFSFRNSHIEQLPEEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYM 168
               +  + F  R + I  +PE I  L     + L     L S     +S      + + 
Sbjct: 203 HHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDN-PLSSRIRESLSQQTAQPDYHG 261

Query: 169 GNSFTHWEVEGQNNASL 185
              +       QN    
Sbjct: 262 PRIYFSMSDGQQNTLHR 278

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 44.2 bits (104), Expect = 3e-05
 Identities = 35/206 (16%), Positives = 56/206 (27%), Gaps = 46/206 (22%)

Query: 48  DIQELPEKLECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVA 107
           D     +K E  K  L      +   ++ +           L LN  +  SLP  L    
Sbjct: 28  DYFSAWDKWE--KQALPGENRNEAVSLLKECLIN---QFSELQLNRLNLSSLPDNLP--- 79

Query: 108 TVGVLKKLVIFSFRNSHIEQLPEEIGQLTRLKLLD---------LSTCSKLKSIRPNVIS 158
                 ++ +     + +  LPE    L  L   D          ++   L  +  N ++
Sbjct: 80  -----PQITVLEITQNALISLPELPASLEYLDACDNRLSTLPELPASLKHLD-VDNNQLT 133

Query: 159 NLPR----LEELYMGN--------SFTHWEV--EGQNN-----ASLAELNQLS----RLT 195
            LP     LE +   N          T  EV     N           L  L      L 
Sbjct: 134 MLPELPALLEYINADNNQLTMLPELPTSLEVLSVRNNQLTFLPELPESLEALDVSTNLLE 193

Query: 196 TLEMLILDAQVMPRELFSLGLERNKI 221
           +L  + +                N+I
Sbjct: 194 SLPAVPVRNHHSEETEIFFRCRENRI 219

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 45.0 bits (107), Expect = 9e-06
 Identities = 13/110 (11%), Positives = 40/110 (36%), Gaps = 13/110 (11%)

Query: 65  FLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGV---LKKLVIFSFR 121
            L + + +++     F+ +P L+ ++ +      +          G       +      
Sbjct: 38  RLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEE--------GAFEGASGVNEILLT 89

Query: 122 NSHIEQLPEEI-GQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGN 170
           ++ +E +  ++   L  LK L L +  ++  +  +    L  +  L + +
Sbjct: 90  SNRLENVQHKMFKGLESLKTLMLRSN-RITCVGNDSFIGLSSVRLLSLYD 138

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 44.6 bits (106), Expect = 1e-05
 Identities = 21/129 (16%), Positives = 48/129 (37%), Gaps = 32/129 (24%)

Query: 84  PSLQVLSLNGFHFPSLPSTLGDVATVGVLKKLVIFSFRNSHIEQLPEEI-GQLTRLKLLD 142
                L LN   F  L +T         L +L   +F N+ I  + E      + +  + 
Sbjct: 32  QYTAELRLNNNEFTVLEAT----GIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEIL 87

Query: 143 LSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEVEGQNNASLAELNQLS--------RL 194
           L++ ++L++++  +   L  L+ L + +                  N+++         L
Sbjct: 88  LTS-NRLENVQHKMFKGLESLKTLMLRS------------------NRITCVGNDSFIGL 128

Query: 195 TTLEMLILD 203
           +++ +L L 
Sbjct: 129 SSVRLLSLY 137

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 42.3 bits (100), Expect = 7e-05
 Identities = 20/116 (17%), Positives = 44/116 (37%), Gaps = 14/116 (12%)

Query: 59  PKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGV---LKKL 115
           P+L+     + K++  I +  FEG   +  + L      ++           +   L+ L
Sbjct: 57  PQLRKINFSNNKIT-DIEEGAFEGASGVNEILLTSNRLENVQH--------KMFKGLESL 107

Query: 116 VIFSFRNSHIEQLPEEI-GQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGN 170
                R++ I  +  +    L+ ++LL L    ++ ++ P     L  L  L +  
Sbjct: 108 KTLMLRSNRITCVGNDSFIGLSSVRLLSLYDN-QITTVAPGAFDTLHSLSTLNLLA 162

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 46.0 bits (109), Expect = 1e-05
 Identities = 49/294 (16%), Positives = 85/294 (28%), Gaps = 63/294 (21%)

Query: 49  IQELPEKLE-CPKLKLFFLFSEKLSLVIPDL------------FFEGVPSLQVLSLNGFH 95
           +  LP       +L +F      L  +   L                 P LQ LS++   
Sbjct: 93  LTSLPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQ 152

Query: 96  FPSLPSTLGDVATVGV-----------LKKLVIFSFRNSHIEQLPEEIGQLTRLKLLDL- 143
             SLP+   ++  +                L   S  ++ +  LP    +L +L   +  
Sbjct: 153 LASLPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLASLPTLPSELYKLWAYNNR 212

Query: 144 -----STCSKLKS--IRPNVISNLP----RLEELYM-GNSFTHWEVEGQNNASL-AELNQ 190
                +  S LK   +  N +++LP     L+EL + GN  T   +      SL    NQ
Sbjct: 213 LTSLPALPSGLKELIVSGNRLTSLPVLPSELKELMVSGNRLTSLPMLPSGLLSLSVYRNQ 272

Query: 191 LS-------RLTTLEMLILD-------AQVMPRELFSLGLERNKIFLGDVWSWTGKYETS 236
           L+        L++   + L+            RE+ S       I   D+   +      
Sbjct: 273 LTRLPESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASA----- 327

Query: 237 RTLKLKLDNRMYLEHGIKMLLRRTEDLHLDKLNGLQNVLHELDGEGFPRLKHLL 290
                       L       L    +      +       E + + F      L
Sbjct: 328 ------PRETRALHLAAADWLVPAREGEPAPADRWHMFGQEDNADAFSLFLDRL 375

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 45.7 bits (108), Expect = 1e-05
 Identities = 31/214 (14%), Positives = 55/214 (25%), Gaps = 37/214 (17%)

Query: 49  IQELPEKLECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVAT 108
           +  LP       LK   +   +L+  +P L       L+ L ++G    SLP        
Sbjct: 213 LTSLPA--LPSGLKELIVSGNRLT-SLPVL----PSELKELMVSGNRLTSLPMLPS---- 261

Query: 109 VGVLKKLVIFSFRNSHIEQLPEEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYM 168
                 L+  S   + + +LPE +  L+    ++L     L       +  +        
Sbjct: 262 -----GLLSLSVYRNQLTRLPESLIHLSSETTVNLEGN-PLSERTLQALREITSAPGYSG 315

Query: 169 GNSFTHWEVEGQN---------------NASLAELNQLSRLTTLEMLILDAQVMPRELFS 213
                                        A   E     R         +A      L  
Sbjct: 316 PIIRFDMAGASAPRETRALHLAAADWLVPAREGEPAPADRWHMFGQE-DNADAFSLFLDR 374

Query: 214 LG----LERNKIFLGDVWSWTGKYETSRTLKLKL 243
           L       ++  F   + SW  +      L+   
Sbjct: 375 LSETENFIKDAGFKAQISSWLAQLAEDEALRANT 408

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 43.3 bits (102), Expect = 6e-05
 Identities = 31/178 (17%), Positives = 55/178 (30%), Gaps = 34/178 (19%)

Query: 47  RDIQELPEKLE---CPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTL 103
           R    + +K+         +  +    L+  +PD        +  L +   +  SLP+  
Sbjct: 25  RGRAAVVQKMRACLNNGNAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLTSLPALP 80

Query: 104 GDVATVGVLKKLVIFSFRNSHIEQLPEEIGQLTRLKLLDLS------TCSKLKS--IRPN 155
                     +L       + +  LP     L  L +            S L    I  N
Sbjct: 81  P---------ELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGN 131

Query: 156 VISNLPR----LEELYM-GNSFTHWEVEGQNNASLAEL-NQLSRL----TTLEMLILD 203
            +++LP     L+EL +  N              L    NQL+ L    + L+ L + 
Sbjct: 132 QLTSLPVLPPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPMLPSGLQELSVS 189

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 45.0 bits (107), Expect = 1e-05
 Identities = 37/160 (23%), Positives = 57/160 (35%), Gaps = 44/160 (27%)

Query: 82  GVP-SLQVLSLNGFHFPSLPSTLGDVATVGVLKKLVIFSFRNSHIEQLPEEI-GQLTRLK 139
            +P   + L L      SLPS          L KL +    ++ ++ LP  I  +L  L+
Sbjct: 34  NIPADTKKLDLQSNKLSSLPSKAFHR-----LTKLRLLYLNDNKLQTLPAGIFKELKNLE 88

Query: 140 LLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEVEGQNNASLAELNQLS------- 192
            L ++   KL+++   V   L  L EL +                    NQL        
Sbjct: 89  TLWVTDN-KLQALPIGVFDQLVNLAELRLDR------------------NQLKSLPPRVF 129

Query: 193 -RLTTLEMLILDA---QVMPRELF-------SLGLERNKI 221
             LT L  L L     Q +P+ +F        L L  N++
Sbjct: 130 DSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQL 169

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 45.0 bits (107), Expect = 1e-05
 Identities = 40/169 (23%), Positives = 67/169 (39%), Gaps = 49/169 (28%)

Query: 75  IPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGV---LKKLVIFSFRNSHIEQLPEE 131
           +P   F  +  L++L LN     +LP+        G+   LK L      ++ ++ LP  
Sbjct: 52  LPSKAFHRLTKLRLLYLNDNKLQTLPA--------GIFKELKNLETLWVTDNKLQALPIG 103

Query: 132 I-GQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEVEGQNNASLAELNQ 190
           +  QL  L  L L   ++LKS+ P V  +L +L  L +G                   N+
Sbjct: 104 VFDQLVNLAELRLDR-NQLKSLPPRVFDSLTKLTYLSLGY------------------NE 144

Query: 191 LS--------RLTTLEMLILDA---QVMPRELFS-------LGLERNKI 221
           L         +LT+L+ L L     + +P   F        L L+ N++
Sbjct: 145 LQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQL 193

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 43.0 bits (102), Expect = 5e-05
 Identities = 34/128 (26%), Positives = 55/128 (42%), Gaps = 16/128 (12%)

Query: 49  IQELPEKL--ECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDV 106
           +Q LP  +  E   L+  ++   KL   +P   F+ + +L  L L+     SLP      
Sbjct: 73  LQTLPAGIFKELKNLETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLKSLPP----- 126

Query: 107 ATVGV---LKKLVIFSFRNSHIEQLPEEI-GQLTRLKLLDLSTCSKLKSIRPNVISNLPR 162
               V   L KL   S   + ++ LP+ +  +LT LK L L   ++LK +       L  
Sbjct: 127 ---RVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYN-NQLKRVPEGAFDKLTE 182

Query: 163 LEELYMGN 170
           L+ L + N
Sbjct: 183 LKTLKLDN 190

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 40.7 bits (96), Expect = 3e-04
 Identities = 27/100 (27%), Positives = 43/100 (43%), Gaps = 13/100 (13%)

Query: 75  IPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGV---LKKLVIFSFRNSHIEQLPEE 131
           +P   F+ +  L  LSL      SLP         GV   L  L      N+ ++++PE 
Sbjct: 124 LPPRVFDSLTKLTYLSLGYNELQSLPK--------GVFDKLTSLKELRLYNNQLKRVPEG 175

Query: 132 I-GQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGN 170
              +LT LK L L   ++LK +      +L +L+ L +  
Sbjct: 176 AFDKLTELKTLKLDN-NQLKRVPEGAFDSLEKLKMLQLQE 214

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 45.1 bits (107), Expect = 1e-05
 Identities = 32/167 (19%), Positives = 53/167 (31%), Gaps = 29/167 (17%)

Query: 58  CPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKKLVI 117
              L      S KL+    +L    +  L  L+ +      L         V     L  
Sbjct: 84  NTNLTYLACDSNKLT----NLDVTPLTKLTYLNCDTNKLTKLD--------VSQNPLLTY 131

Query: 118 FSFRNSHIEQLPEEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYM-GNSFTHWE 176
            +   + + ++   +   T+L  LD   C   K I    ++   +L  L    N  T  +
Sbjct: 132 LNCARNTLTEID--VSHNTQLTELD---CHLNKKITKLDVTPQTQLTTLDCSFNKITELD 186

Query: 177 VEGQNNASLAELNQLS--RLTTLEMLILDAQVMPRELFSLGLERNKI 221
           V    N  L  LN      +T L++          +L  L    NK+
Sbjct: 187 VS--QNKLLNRLN-CDTNNITKLDLNQN------IQLTFLDCSSNKL 224

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 43.5 bits (103), Expect = 6e-05
 Identities = 26/156 (16%), Positives = 48/156 (30%), Gaps = 29/156 (18%)

Query: 58  CPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKKLVI 117
             +L      S KL+    ++    +  L     +      L         V  L KL  
Sbjct: 211 NIQLTFLDCSSNKLT----EIDVTPLTQLTYFDCSVNPLTELD--------VSTLSKLTT 258

Query: 118 FSFRNSHIEQLPEEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYM-GNSFTHWE 176
                + + ++   +   T+L       C K+K +    +++  +L  L       T  +
Sbjct: 259 LHCIQTDLLEID--LTHNTQLIYFQAEGCRKIKEL---DVTHNTQLYLLDCQAAGITELD 313

Query: 177 VEGQNNASLAEL----NQL-----SRLTTLEMLILD 203
           +    N  L  L     +L     S  T L+ L   
Sbjct: 314 L--SQNPKLVYLYLNNTELTELDVSHNTKLKSLSCV 347

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 43.7 bits (104), Expect = 4e-05
 Identities = 26/127 (20%), Positives = 50/127 (39%), Gaps = 19/127 (14%)

Query: 74  VIPDLFFEGVPSLQVLSLNGFHF---PSLPSTLGDVATVGVLKKLVIFSFRNS-HIE-QL 128
           V+ D        +  L L+G +      +PS+L +      L  L         ++   +
Sbjct: 41  VLCDTDT-QTYRVNNLDLSGLNLPKPYPIPSSLAN------LPYLNFLYIGGINNLVGPI 93

Query: 129 PEEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYM-GNSFTHWEVEGQNNASLAE 187
           P  I +LT+L  L ++  +   +I P+ +S +  L  L    N+ +     G    S++ 
Sbjct: 94  PPAIAKLTQLHYLYITHTNVSGAI-PDFLSQIKTLVTLDFSYNALS-----GTLPPSISS 147

Query: 188 LNQLSRL 194
           L  L  +
Sbjct: 148 LPNLVGI 154

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 40.2 bits (95), Expect = 5e-04
 Identities = 29/168 (17%), Positives = 53/168 (31%), Gaps = 35/168 (20%)

Query: 58  CPKLKLFFLFSE-KLSLVIPDLFFEGVPSLQVLSLNGFHFP-SLPSTLGDVATVGVLKKL 115
            P L   ++     L   IP      +  L  L +   +   ++P  L        +K L
Sbjct: 75  LPYLNFLYIGGINNLVGPIPPAIA-KLTQLHYLYITHTNVSGAIPDFLSQ------IKTL 127

Query: 116 VIFSFRNSHIE-QLPEEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRL-EELYMG-NSF 172
           V   F  + +   LP  I  L  L  +     +++    P+   +  +L   + +  N  
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDG-NRISGAIPDSYGSFSKLFTSMTISRNRL 186

Query: 173 THWEVEGQ-----NNASLAEL----NQLS--------RLTTLEMLILD 203
           T     G+      N +LA +    N L              + + L 
Sbjct: 187 T-----GKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLA 229

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 43.2 bits (101), Expect = 6e-05
 Identities = 19/123 (15%), Positives = 34/123 (27%), Gaps = 9/123 (7%)

Query: 129 PEEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYM-GNSFTHWEVE-GQNNASLA 186
              +     L  L +     L+ +    +  L  L  L +  +       +       L+
Sbjct: 24  LHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLS 83

Query: 187 ELNQLS--RLTTLEMLILDAQVMPRELFSLGLERNKIFLGDVWSWTGKYETSRTLKLKLD 244
            LN LS   L +L    +        L  L L  N +       W  ++E      +   
Sbjct: 84  RLN-LSFNALESLSWKTVQ----GLSLQELVLSGNPLHCSCALRWLQRWEEEGLGGVPEQ 138

Query: 245 NRM 247
              
Sbjct: 139 KLQ 141

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 42.3 bits (100), Expect = 8e-05
 Identities = 41/202 (20%), Positives = 79/202 (39%), Gaps = 40/202 (19%)

Query: 20  NIQIISDLREVFEDLMQKDPIAISHPCRDIQELPEKLECPKLKLFFLFSEKLSLVIPDLF 79
            I + + ++++F D    + I  +   + + +   + E   +      +  +  V     
Sbjct: 7   TITVPTPIKQIFSDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQG--- 63

Query: 80  FEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKKLVIFSFRNSHIEQLPEEIGQLTRLK 139
            + +P++  L LNG         L D+  +  LK L       + ++ L   +  L +LK
Sbjct: 64  IQYLPNVTKLFLNGNK-------LTDIKPLANLKNLGWLFLDENKVKDL-SSLKDLKKLK 115

Query: 140 LLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEVEGQNNASLAELNQLSRLTTLEM 199
            L L     +  I    + +LP+LE LY+GN                  N+++ +T L  
Sbjct: 116 SLSLEHN-GISDING--LVHLPQLESLYLGN------------------NKITDITVLSR 154

Query: 200 LILDAQVMPRELFSLGLERNKI 221
           L         +L +L LE N+I
Sbjct: 155 LT--------KLDTLSLEDNQI 168

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 39.3 bits (92), Expect = 9e-04
 Identities = 32/157 (20%), Positives = 65/157 (41%), Gaps = 26/157 (16%)

Query: 49  IQELPEKLECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVAT 108
           + ++        L   FL   K+  +      + +  L+ LSL         + + D+  
Sbjct: 80  LTDIKPLANLKNLGWLFLDENKVKDLSS---LKDLKKLKSLSLEH-------NGISDING 129

Query: 109 VGVLKKLVIFSFRNSHIEQLPEEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYM 168
           +  L +L      N+ I  +   + +LT+L  L L    ++  I P  ++ L +L+ LY+
Sbjct: 130 LVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDN-QISDIVP--LAGLTKLQNLYL 185

Query: 169 GNSFTHWEVEGQNNASLAELNQLSRLTTLEMLILDAQ 205
                       N+  +++L  L+ L  L++L L +Q
Sbjct: 186 SK----------NH--ISDLRALAGLKNLDVLELFSQ 210

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 42.0 bits (99), Expect = 1e-04
 Identities = 27/156 (17%), Positives = 62/156 (39%), Gaps = 26/156 (16%)

Query: 48  DIQELPEKLECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVA 107
            +  +        L    L   +++ + P    + +  +  L L+G       + L +V+
Sbjct: 52  GVTTIEGVQYLNNLIGLELKDNQITDLAP---LKNLTKITELELSG-------NPLKNVS 101

Query: 108 TVGVLKKLVIFSFRNSHIEQLPEEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELY 167
            +  L+ +      ++ I  +   +  L+ L++L L    ++ +I P  ++ L  L+ L 
Sbjct: 102 AIAGLQSIKTLDLTSTQITDV-TPLAGLSNLQVLYLDLN-QITNISP--LAGLTNLQYLS 157

Query: 168 MGNSFTHWEVEGQNNASLAELNQLSRLTTLEMLILD 203
           +GN              +++L  L+ L+ L  L  D
Sbjct: 158 IGN----------AQ--VSDLTPLANLSKLTTLKAD 181

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 41.1 bits (97), Expect = 2e-04
 Identities = 23/147 (15%), Positives = 48/147 (32%), Gaps = 23/147 (15%)

Query: 58  CPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKKLVI 117
              +K   + +   +   P     G+ +L+ L + G        T   +  +  L  L +
Sbjct: 65  AHNIKDLTINNIHATNYNP---ISGLSNLERLRIMGKDV-----TSDKIPNLSGLTSLTL 116

Query: 118 FSFRNSHIEQL-PEEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWE 176
               +S  +     +I  L ++  +DLS    +  I P  +  LP L+ L +        
Sbjct: 117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP--LKTLPELKSLNIQF------ 168

Query: 177 VEGQNNASLAELNQLSRLTTLEMLILD 203
               +   + +   +     L  L   
Sbjct: 169 ----DG--VHDYRGIEDFPKLNQLYAF 189

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 41.2 bits (97), Expect = 2e-04
 Identities = 24/100 (24%), Positives = 40/100 (40%), Gaps = 14/100 (14%)

Query: 75  IPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGV---LKKLVIFSFRNSHIEQLPEE 131
           +    F+ + +L+ L L      +LP         GV   L +L +     + +  LP  
Sbjct: 55  LEPGVFDSLINLKELYLGSNQLGALPV--------GVFDSLTQLTVLDLGTNQLTVLPSA 106

Query: 132 I-GQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGN 170
           +  +L  LK L +  C+KL  + P  I  L  L  L +  
Sbjct: 107 VFDRLVHLKELFMC-CNKLTEL-PRGIERLTHLTHLALDQ 144

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 41.1 bits (97), Expect = 2e-04
 Identities = 21/122 (17%), Positives = 40/122 (32%), Gaps = 41/122 (33%)

Query: 84  PSLQVLSLNGFHFPSLPSTLGDVATVGVLKKLVIFSFRNSHIEQLPEEIGQLTRLKLLDL 143
           PS Q L L   H  ++PS                 +F N            L  +  + +
Sbjct: 31  PSTQTLKLIETHLRTIPSH----------------AFSN------------LPNISRIYV 62

Query: 144 STCSKLKSIRPNVISNLPRLEELYMGNSFTHWEVEGQNNASLAEL--NQLSRLTTLEMLI 201
           S    L+ +  +   NL ++  + +           +N  +L  +  + L  L  L+ L 
Sbjct: 63  SIDVTLQQLESHSFYNLSKVTHIEI-----------RNTRNLTYIDPDALKELPLLKFLG 111

Query: 202 LD 203
           + 
Sbjct: 112 IF 113

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 40.8 bits (96), Expect = 3e-04
 Identities = 32/133 (24%), Positives = 52/133 (39%), Gaps = 33/133 (24%)

Query: 80  FEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKKLVIFSFRNSHIEQLPEEI-GQLTRL 138
            + + +L  L L G    SLP+ + D      L  L       + ++ LP+ +  +LT L
Sbjct: 81  LKELTNLTYLILTGNQLQSLPNGVFDK-----LTNLKELVLVENQLQSLPDGVFDKLTNL 135

Query: 139 KLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEVEGQNNASLAELNQLS------ 192
             L+L+  ++L+S+   V   L  L EL +                    NQL       
Sbjct: 136 TYLNLAH-NQLQSLPKGVFDKLTNLTELDLSY------------------NQLQSLPEGV 176

Query: 193 --RLTTLEMLILD 203
             +LT L+ L L 
Sbjct: 177 FDKLTQLKDLRLY 189

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 39.6 bits (93), Expect = 3e-04
 Identities = 23/92 (25%), Positives = 41/92 (44%), Gaps = 13/92 (14%)

Query: 112 LKKLVIFSFRNSHIEQLPEEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNS 171
           L +     F ++ I +L +    L RLK L ++  +++  I   +   LP L EL + N 
Sbjct: 41  LDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVN-NNRICRIGEGLDQALPDLTELILTN- 97

Query: 172 FTHWEVEGQNN-ASLAELNQLSRLTTLEMLIL 202
                    N+   L +L+ L+ L +L  L +
Sbjct: 98  ---------NSLVELGDLDPLASLKSLTYLCI 120

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 39.2 bits (92), Expect = 5e-04
 Identities = 20/100 (20%), Positives = 36/100 (36%), Gaps = 30/100 (30%)

Query: 124 HIEQLPEEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEVEGQNNA 183
               +P+E+     L L+DLS  +++ ++     SN+ +L  L +               
Sbjct: 42  QFTLVPKELSNYKHLTLIDLSN-NRISTLSNQSFSNMTQLLTLILSY------------- 87

Query: 184 SLAELNQLS--------RLTTLEMLILDA---QVMPRELF 212
                N+L          L +L +L L      V+P   F
Sbjct: 88  -----NRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAF 122

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 38.5 bits (90), Expect = 6e-04
 Identities = 19/92 (20%), Positives = 35/92 (38%), Gaps = 13/92 (14%)

Query: 112 LKKLVIFSFRNSHIEQLPEEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNS 171
            ++L   S  N  +  +   + +L +LK L+LS   ++      +    P L  L +   
Sbjct: 41  FEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDN-RVSGGLEVLAEKCPNLTHLNLSG- 97

Query: 172 FTHWEVEGQNN-ASLAELNQLSRLTTLEMLIL 202
                    N    L+ +  L +L  L+ L L
Sbjct: 98  ---------NKIKDLSTIEPLKKLENLKSLDL 120

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 40.3 bits (94), Expect = 7e-04
 Identities = 18/116 (15%), Positives = 32/116 (27%), Gaps = 4/116 (3%)

Query: 58  CPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKKLVI 117
           C  L    +      ++    FF+   +L+     G               +   +KL  
Sbjct: 219 CRSLVSVKV--GDFEILELVGFFKAAANLE--EFCGGSLNEDIGMPEKYMNLVFPRKLCR 274

Query: 118 FSFRNSHIEQLPEEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFT 173
                    ++P       +++ LDL            +I   P LE L   N   
Sbjct: 275 LGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIG 330

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	308
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.92
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.92
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.92
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.92
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.92
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.92
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.91
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.91
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.91
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.91
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.91
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.91
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.91
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.91
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.91
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.91
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.91
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.91
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.9
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.9
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.9
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.9
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.9
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.9
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.9
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.89
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.89
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.89
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.89
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.89
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.89
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.88
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.88
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.88
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.88
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.88
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.88
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.88
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.87
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.87
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.87
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.87
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.86
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.86
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.86
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.86
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.86
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.86
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.86
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.86
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.86
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.86
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.86
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.85
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.85
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.85
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.85
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.85
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.85
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.85
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.85
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.84
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.84
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.84
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.84
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.84
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.83
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.83
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.83
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.83
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.83
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.83
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.82
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.81
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.81
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.81
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.81
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.8
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.8
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.79
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.79
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.78
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.77
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.77
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.76
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.75
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.75
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.75
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.74
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.74
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.74
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.73
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.73
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.73
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.73
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.73
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.72
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.72
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.72
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.72
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.7
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.7
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.7
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.69
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.69
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.69
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.69
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.67
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.67
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.66
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.66
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.66
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.66
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.64
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.59
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.59
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.59
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.58
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.58
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.58
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.58
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.57
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.55
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.53
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.52
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.51
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.49
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.49
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.48
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.46
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.46
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.44
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.43
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.41
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.39
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.37
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.36
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.36
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.31
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.12
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.1
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.06
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.03
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.02
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.96
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.86
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.47
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.39
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.37
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.25
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.2
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.16
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.16
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.05
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.02
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	97.93
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	97.75
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	97.55
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	97.17
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	97.12
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.5
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.31
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.18
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	95.64

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.92  E-value=1.4e-24  Score=197.39  Aligned_cols=148  Identities=21%  Similarity=0.236  Sum_probs=117.7

Q ss_pred             eecccchhhHhhhhcCCCCeeEEeecCCCCCC-CCcC-CCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCC
Q 037941           21 IQIISDLREVFEDLMQKDPIAISHPCRDIQEL-PEKL-ECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPS   98 (308)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~-~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~   98 (308)
                      .+.+.++..+|.  ..+++++|++++|.+..+ |..+ .+++|++|++++|.+.+.++...+.++++|++|++++|.+..
T Consensus        16 ~c~~~~l~~lp~--l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~   93 (455)
T 3v47_A           16 ICINRGLHQVPE--LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQ   93 (455)
T ss_dssp             ECCSSCCSSCCC--CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCE
T ss_pred             CcCCCCcccCCC--CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCc
Confidence            455778888886  578999999999999776 4445 999999999999998777777667899999999999999996


Q ss_pred             C-CCCCCCcccccccccccEEeecCCcCcc-cchh--hhCcCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCccc
Q 037941           99 L-PSTLGDVATVGVLKKLVIFSFRNSHIEQ-LPEE--IGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTH  174 (308)
Q Consensus        99 l-p~~~~~~~~l~~l~~L~~L~l~~~~i~~-l~~~--~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~  174 (308)
                      + |..      ++.+++|++|++++|.++. ++..  +..+++|+.|++++|......|...+..+++|++|++++|.+.
T Consensus        94 ~~~~~------~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~  167 (455)
T 3v47_A           94 LETGA------FNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK  167 (455)
T ss_dssp             ECTTT------TTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBS
T ss_pred             cChhh------ccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccc
Confidence            6 555      7888888888888888873 4444  7788888888888887333335544677888888888888766


Q ss_pred             cc
Q 037941          175 WE  176 (308)
Q Consensus       175 ~~  176 (308)
                      +.
T Consensus       168 ~~  169 (455)
T 3v47_A          168 SI  169 (455)
T ss_dssp             CC
T ss_pred             cc
Confidence            43

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.92  E-value=4e-24  Score=195.59  Aligned_cols=264  Identities=19%  Similarity=0.169  Sum_probs=183.3

Q ss_pred             eecccchhhHhhhhcCCCCeeEEeecCCCCCCCC-cC-CCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCC
Q 037941           21 IQIISDLREVFEDLMQKDPIAISHPCRDIQELPE-KL-ECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPS   98 (308)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~   98 (308)
                      .+.+.++..+|. ...+++++|++++|.+..+++ .+ .+++|++|++++|.++...+..+ .++++|++|++++|.+..
T Consensus        17 ~c~~~~l~~ip~-~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~-~~l~~L~~L~L~~n~l~~   94 (477)
T 2id5_A           17 LCHRKRFVAVPE-GIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAF-NNLFNLRTLGLRSNRLKL   94 (477)
T ss_dssp             ECCSCCCSSCCS-CCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTT-TTCTTCCEEECCSSCCCS
T ss_pred             EeCCCCcCcCCC-CCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhh-hCCccCCEEECCCCcCCc
Confidence            455677888884 457899999999999987754 44 89999999999999885545554 789999999999999999


Q ss_pred             CCCCCCCcccccccccccEEeecCCcCccc-chhhhCcCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCcccccc
Q 037941           99 LPSTLGDVATVGVLKKLVIFSFRNSHIEQL-PEEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEV  177 (308)
Q Consensus        99 lp~~~~~~~~l~~l~~L~~L~l~~~~i~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~  177 (308)
                      +|...     +..+++|++|++++|.++.+ +..+..+++|+.|++++|. +..++...+..+++|+.|++++|.+...+
T Consensus        95 ~~~~~-----~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  168 (477)
T 2id5_A           95 IPLGV-----FTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDND-LVYISHRAFSGLNSLEQLTLEKCNLTSIP  168 (477)
T ss_dssp             CCTTS-----STTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTT-CCEECTTSSTTCTTCCEEEEESCCCSSCC
T ss_pred             cCccc-----ccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCc-cceeChhhccCCCCCCEEECCCCcCcccC
Confidence            98875     78899999999999998854 5678899999999999988 66665555888999999999999877322


Q ss_pred             cCCcccchhhhhcCCCCCEEEeeeccCccccchhhc--cCCceeEeec------------------------cCccc---
Q 037941          178 EGQNNASLAELNQLSRLTTLEMLILDAQVMPRELFS--LGLERNKIFL------------------------GDVWS---  228 (308)
Q Consensus       178 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~~~~--~~L~~l~i~~------------------------~~~~~---  228 (308)
                             ...+..+++|+.|++++|.+..++...+.  .+|+.|++..                        +.+..   
T Consensus       169 -------~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~  241 (477)
T 2id5_A          169 -------TEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPY  241 (477)
T ss_dssp             -------HHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCH
T ss_pred             -------hhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCH
Confidence                   24566777777777777776655543322  4555555443                        33221   


Q ss_pred             -ccCCCCcCceEEEeecCchhhhhhHHHHhcccceeecCCccchhhhhhccCCCCCCcccEEecccccccccccc
Q 037941          229 -WTGKYETSRTLKLKLDNRMYLEHGIKMLLRRTEDLHLDKLNGLQNVLHELDGEGFPRLKHLLVQNASEILYIVS  302 (308)
Q Consensus       229 -~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~  302 (308)
                       .+..+++|+.|+|+.|...........-+++|++|++++ +.++.+.+. ...++++|+.|++++| ++..++.
T Consensus       242 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~-~~~~l~~L~~L~L~~N-~l~~~~~  313 (477)
T 2id5_A          242 LAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVG-GQLAVVEPY-AFRGLNYLRVLNVSGN-QLTTLEE  313 (477)
T ss_dssp             HHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCS-SCCSEECTT-TBTTCTTCCEEECCSS-CCSCCCG
T ss_pred             HHhcCccccCeeECCCCcCCccChhhccccccCCEEECCC-CccceECHH-HhcCcccCCEEECCCC-cCceeCH
Confidence             123455566666655544333222222235666666665 344443221 1245677777777777 5666553

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.92  E-value=6.9e-24  Score=189.11  Aligned_cols=244  Identities=20%  Similarity=0.231  Sum_probs=135.9

Q ss_pred             CCCCeeEEeecCCCCCCCC-cC-CCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCCCCCCcccccccc
Q 037941           36 QKDPIAISHPCRDIQELPE-KL-ECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLK  113 (308)
Q Consensus        36 ~~~l~~L~l~~~~~~~~~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~~~~l~~l~  113 (308)
                      .+++++|++++|.+..+++ .+ .+++|++|++++|.++. ++...+.++++|++|++++|.+..+|..+     ++.++
T Consensus        68 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~l~~~~-----~~~l~  141 (390)
T 3o6n_A           68 FRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRY-LPPHVFQNVPLLTVLVLERNDLSSLPRGI-----FHNTP  141 (390)
T ss_dssp             CCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTT-----TTTCT
T ss_pred             cccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCc-CCHHHhcCCCCCCEEECCCCccCcCCHHH-----hcCCC
Confidence            4455555555555544433 22 55555555555555542 22222345555555555555555555542     35555


Q ss_pred             cccEEeecCCcCcccc-hhhhCcCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCcccc-----------------
Q 037941          114 KLVIFSFRNSHIEQLP-EEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHW-----------------  175 (308)
Q Consensus       114 ~L~~L~l~~~~i~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-----------------  175 (308)
                      +|++|++++|.++.++ ..+..+++|+.|++++|. ++.++.   ..+++|+.+++++|.+.+                 
T Consensus       142 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~---~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l  217 (390)
T 3o6n_A          142 KLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR-LTHVDL---SLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSI  217 (390)
T ss_dssp             TCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSC-CSBCCG---GGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCC
T ss_pred             CCcEEECCCCccCccChhhccCCCCCCEEECCCCc-CCcccc---ccccccceeecccccccccCCCCcceEEECCCCee
Confidence            5555555555555333 335555555555555554 333332   122222222222222111                 


Q ss_pred             --cccC------------CcccchhhhhcCCCCCEEEeeeccCcccc-chhhc-cCCceeEeeccCcccc---cCCCCcC
Q 037941          176 --EVEG------------QNNASLAELNQLSRLTTLEMLILDAQVMP-RELFS-LGLERNKIFLGDVWSW---TGKYETS  236 (308)
Q Consensus       176 --~~~~------------~~~~~~~~l~~l~~L~~L~l~~~~~~~~p-~~~~~-~~L~~l~i~~~~~~~~---~~~~~~L  236 (308)
                        .+..            ..-.....+..+++|++|++++|.+..++ ..+.. ++|+.|++..+.+...   ...+++|
T Consensus       218 ~~~~~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L  297 (390)
T 3o6n_A          218 NVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTL  297 (390)
T ss_dssp             CEEECCCCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTC
T ss_pred             eeccccccccccEEECCCCCCcccHHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccCcccCCCCCC
Confidence              0000            00001234667788888888888877663 33333 7888888877665443   4567889


Q ss_pred             ceEEEeecCchhhhhhHHHHhcccceeecCCccchhhhhhccCCCCCCcccEEeccccc
Q 037941          237 RTLKLKLDNRMYLEHGIKMLLRRTEDLHLDKLNGLQNVLHELDGEGFPRLKHLLVQNAS  295 (308)
Q Consensus       237 ~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~  295 (308)
                      +.|+|+.|.....+..+.. +++|++|++++ +.++.+    ....+++|+.|++++|+
T Consensus       298 ~~L~L~~n~l~~~~~~~~~-l~~L~~L~L~~-N~i~~~----~~~~~~~L~~L~l~~N~  350 (390)
T 3o6n_A          298 KVLDLSHNHLLHVERNQPQ-FDRLENLYLDH-NSIVTL----KLSTHHTLKNLTLSHND  350 (390)
T ss_dssp             CEEECCSSCCCCCGGGHHH-HTTCSEEECCS-SCCCCC----CCCTTCCCSEEECCSSC
T ss_pred             CEEECCCCcceecCccccc-cCcCCEEECCC-Ccccee----CchhhccCCEEEcCCCC
Confidence            9999998876665555555 48999999988 455553    34678899999998873

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.92  E-value=7e-24  Score=184.86  Aligned_cols=238  Identities=16%  Similarity=0.181  Sum_probs=122.8

Q ss_pred             CCCCeeEEeecCCCCCCCCc-C-CCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCCCCCCcccccccc
Q 037941           36 QKDPIAISHPCRDIQELPEK-L-ECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLK  113 (308)
Q Consensus        36 ~~~l~~L~l~~~~~~~~~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~~~~l~~l~  113 (308)
                      .+.+++|++++|.+..+++. + .+++|++|++++|.++...|..+ ..+++|++|++++|.+..+|..      +.  +
T Consensus        51 ~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~Ls~n~l~~l~~~------~~--~  121 (330)
T 1xku_A           51 PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAF-APLVKLERLYLSKNQLKELPEK------MP--K  121 (330)
T ss_dssp             CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTT-TTCTTCCEEECCSSCCSBCCSS------CC--T
T ss_pred             CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHh-cCCCCCCEEECCCCcCCccChh------hc--c
Confidence            45566666666666555442 2 56666666666666553333333 4566666666666666666555      22  4


Q ss_pred             cccEEeecCCcCcccch-hhhCcCCCCEEecCCCCCCCc--cCcchhcCCCCCceEEccCCcccccccCCcccchhhhhc
Q 037941          114 KLVIFSFRNSHIEQLPE-EIGQLTRLKLLDLSTCSKLKS--IRPNVISNLPRLEELYMGNSFTHWEVEGQNNASLAELNQ  190 (308)
Q Consensus       114 ~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~l~~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~  190 (308)
                      +|++|++++|.++.++. .+..+++|+.|++++|. ++.  .....+..+++|+.|++++|.+...+.        .+  
T Consensus       122 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~--------~~--  190 (330)
T 1xku_A          122 TLQELRVHENEITKVRKSVFNGLNQMIVVELGTNP-LKSSGIENGAFQGMKKLSYIRIADTNITTIPQ--------GL--  190 (330)
T ss_dssp             TCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSC-CCGGGBCTTGGGGCTTCCEEECCSSCCCSCCS--------SC--
T ss_pred             cccEEECCCCcccccCHhHhcCCccccEEECCCCc-CCccCcChhhccCCCCcCEEECCCCccccCCc--------cc--
Confidence            56666666666654442 35556666666666655 321  222225556666666666665552211        11  


Q ss_pred             CCCCCEEEeeeccCccccc-hhhc-cCCceeEeeccCccc----ccCCCCcCceEEEeecCchhhhhhHHHHhcccceee
Q 037941          191 LSRLTTLEMLILDAQVMPR-ELFS-LGLERNKIFLGDVWS----WTGKYETSRTLKLKLDNRMYLEHGIKMLLRRTEDLH  264 (308)
Q Consensus       191 l~~L~~L~l~~~~~~~~p~-~~~~-~~L~~l~i~~~~~~~----~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~  264 (308)
                      .++|++|++++|.++.++. .+.. ++|+.|++..+.+..    .+..+++|+.|+|+.|.....+..+..+ ++|++|+
T Consensus       191 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l-~~L~~L~  269 (330)
T 1xku_A          191 PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADH-KYIQVVY  269 (330)
T ss_dssp             CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTC-SSCCEEE
T ss_pred             cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCChhhccC-CCcCEEE
Confidence            1456666666666555432 2222 556666655544322    2344556666666666544433434332 6666666


Q ss_pred             cCCccchhhhhhccCC-----CCCCcccEEeccccc
Q 037941          265 LDKLNGLQNVLHELDG-----EGFPRLKHLLVQNAS  295 (308)
Q Consensus       265 l~~~~~~~~~~~~~~~-----~~~~~L~~L~l~~c~  295 (308)
                      +++ +.++.++.....     ...+.|+.|++.++|
T Consensus       270 l~~-N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~  304 (330)
T 1xku_A          270 LHN-NNISAIGSNDFCPPGYNTKKASYSGVSLFSNP  304 (330)
T ss_dssp             CCS-SCCCCCCTTSSSCSSCCTTSCCCSEEECCSSS
T ss_pred             CCC-CcCCccChhhcCCcccccccccccceEeecCc
Confidence            665 344443322211     113456666666654

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.92  E-value=1.8e-24  Score=190.42  Aligned_cols=257  Identities=15%  Similarity=0.181  Sum_probs=202.5

Q ss_pred             cccchhhHhhhhcCCCCeeEEeecCCCCCCCC-cC-CCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCC
Q 037941           23 IISDLREVFEDLMQKDPIAISHPCRDIQELPE-KL-ECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLP  100 (308)
Q Consensus        23 ~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp  100 (308)
                      .+.++..+|. ...+++++|++++|.+..++. .+ .+++|++|++++|.+++..+.. +.++++|++|++++|.+..+|
T Consensus        39 ~~~~l~~iP~-~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~Ls~n~l~~~~  116 (353)
T 2z80_A           39 SSGSLNSIPS-GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDS-FSSLGSLEHLDLSYNYLSNLS  116 (353)
T ss_dssp             CSTTCSSCCT-TCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTT-TTTCTTCCEEECCSSCCSSCC
T ss_pred             CCCCcccccc-cccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhh-cCCCCCCCEEECCCCcCCcCC
Confidence            3567777874 456799999999999988877 34 9999999999999988544444 478999999999999999988


Q ss_pred             CCCCCcccccccccccEEeecCCcCcccch--hhhCcCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCccccccc
Q 037941          101 STLGDVATVGVLKKLVIFSFRNSHIEQLPE--EIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEVE  178 (308)
Q Consensus       101 ~~~~~~~~l~~l~~L~~L~l~~~~i~~l~~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~  178 (308)
                      ...     ++.+++|++|++++|.++.+|.  .+..+++|+.|++++|..++.++...++.+++|++|++++|.+.+.. 
T Consensus       117 ~~~-----~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-  190 (353)
T 2z80_A          117 SSW-----FKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYE-  190 (353)
T ss_dssp             HHH-----HTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEEC-
T ss_pred             HhH-----hCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccC-
Confidence            764     7889999999999999998887  68899999999999986577776655889999999999999888332 


Q ss_pred             CCcccchhhhhcCCCCCEEEeeeccCccccchhhc--cCCceeEeeccCcccc-------cCCCCcCceEEEeecCchhh
Q 037941          179 GQNNASLAELNQLSRLTTLEMLILDAQVMPRELFS--LGLERNKIFLGDVWSW-------TGKYETSRTLKLKLDNRMYL  249 (308)
Q Consensus       179 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~~~~--~~L~~l~i~~~~~~~~-------~~~~~~L~~L~L~~~~~~~~  249 (308)
                            +..+..+++|++|++++|.++.+|.....  ++|+.|++..+.+...       ......++.++|+.+.....
T Consensus       191 ------~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~  264 (353)
T 2z80_A          191 ------PKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDE  264 (353)
T ss_dssp             ------TTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHH
T ss_pred             ------HHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCc
Confidence                  36788899999999999999888877653  8999999987765442       22356678888877654321


Q ss_pred             -----hhhHHHHhcccceeecCCccchhhhhhccCCCCCCcccEEecccccc
Q 037941          250 -----EHGIKMLLRRTEDLHLDKLNGLQNVLHELDGEGFPRLKHLLVQNASE  296 (308)
Q Consensus       250 -----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~  296 (308)
                           +..+.. +++|++|++++ +.++.++... .+.+++|++|++.+|+-
T Consensus       265 ~l~~l~~~l~~-l~~L~~L~Ls~-N~l~~i~~~~-~~~l~~L~~L~L~~N~~  313 (353)
T 2z80_A          265 SLFQVMKLLNQ-ISGLLELEFSR-NQLKSVPDGI-FDRLTSLQKIWLHTNPW  313 (353)
T ss_dssp             HHHHHHHHHHT-CTTCCEEECCS-SCCCCCCTTT-TTTCTTCCEEECCSSCB
T ss_pred             chhhhHHHHhc-ccCCCEEECCC-CCCCccCHHH-HhcCCCCCEEEeeCCCc
Confidence                 222333 48999999998 5666655432 36789999999999853

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.92  E-value=1.5e-24  Score=187.83  Aligned_cols=245  Identities=13%  Similarity=0.149  Sum_probs=199.7

Q ss_pred             CCCeeEEeecCCCC---CCCCcC-CCCCccEEEecC-CCCcCCCCchhhcCCCCccEEEccCCCCC-CCCCCCCCccccc
Q 037941           37 KDPIAISHPCRDIQ---ELPEKL-ECPKLKLFFLFS-EKLSLVIPDLFFEGVPSLQVLSLNGFHFP-SLPSTLGDVATVG  110 (308)
Q Consensus        37 ~~l~~L~l~~~~~~---~~~~~~-~~~~L~~L~l~~-~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~lp~~~~~~~~l~  110 (308)
                      .++++|+++++.+.   .+|..+ .+++|++|++++ |.+.+.+|..+ .++++|++|++++|.+. .+|..      +.
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l-~~l~~L~~L~Ls~n~l~~~~p~~------~~  122 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAI-AKLTQLHYLYITHTNVSGAIPDF------LS  122 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGG-GGCTTCSEEEEEEECCEEECCGG------GG
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhH-hcCCCCCEEECcCCeeCCcCCHH------Hh
Confidence            68999999999995   578877 999999999995 88888888776 78999999999999998 78887      89


Q ss_pred             ccccccEEeecCCcCc-ccchhhhCcCCCCEEecCCCCCCCccCcchhcCCC-CCceEEccCCcccccccCCcccchhhh
Q 037941          111 VLKKLVIFSFRNSHIE-QLPEEIGQLTRLKLLDLSTCSKLKSIRPNVISNLP-RLEELYMGNSFTHWEVEGQNNASLAEL  188 (308)
Q Consensus       111 ~l~~L~~L~l~~~~i~-~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~~l  188 (308)
                      .+++|++|++++|.++ .+|..+..+++|+.|++++|.....+|.. +..++ +|+.|++++|.+.+..       +..+
T Consensus       123 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~-l~~l~~~L~~L~L~~N~l~~~~-------~~~~  194 (313)
T 1ogq_A          123 QIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDS-YGSFSKLFTSMTISRNRLTGKI-------PPTF  194 (313)
T ss_dssp             GCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGG-GGCCCTTCCEEECCSSEEEEEC-------CGGG
T ss_pred             CCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHH-HhhhhhcCcEEECcCCeeeccC-------ChHH
Confidence            9999999999999998 88999999999999999999944478877 78887 9999999999988433       3566


Q ss_pred             hcCCCCCEEEeeeccCccccch-hhc-cCCceeEeeccCccc---ccCCCCcCceEEEeecCchhh-hhhHHHHhcccce
Q 037941          189 NQLSRLTTLEMLILDAQVMPRE-LFS-LGLERNKIFLGDVWS---WTGKYETSRTLKLKLDNRMYL-EHGIKMLLRRTED  262 (308)
Q Consensus       189 ~~l~~L~~L~l~~~~~~~~p~~-~~~-~~L~~l~i~~~~~~~---~~~~~~~L~~L~L~~~~~~~~-~~~~~~~~~~L~~  262 (308)
                      ..+. |+.|++++|.+...+.. +.. ++|+.|++..+.+..   ....+++|+.|+|+.|..... +..+.. +++|++
T Consensus       195 ~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~-l~~L~~  272 (313)
T 1ogq_A          195 ANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQ-LKFLHS  272 (313)
T ss_dssp             GGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGG-CTTCCE
T ss_pred             hCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhc-CcCCCE
Confidence            6776 99999999987754443 333 899999987765432   356778999999999877633 444544 499999


Q ss_pred             eecCCccchhhhhhccCCCCCCcccEEeccccccccccc
Q 037941          263 LHLDKLNGLQNVLHELDGEGFPRLKHLLVQNASEILYIV  301 (308)
Q Consensus       263 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~  301 (308)
                      |++++ +.++...+..  ..+++|+.|++.+++.+...|
T Consensus       273 L~Ls~-N~l~~~ip~~--~~l~~L~~l~l~~N~~lc~~p  308 (313)
T 1ogq_A          273 LNVSF-NNLCGEIPQG--GNLQRFDVSAYANNKCLCGSP  308 (313)
T ss_dssp             EECCS-SEEEEECCCS--TTGGGSCGGGTCSSSEEESTT
T ss_pred             EECcC-CcccccCCCC--ccccccChHHhcCCCCccCCC
Confidence            99998 4555333333  678999999999998776544

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.91  E-value=9e-24  Score=193.22  Aligned_cols=263  Identities=15%  Similarity=0.119  Sum_probs=184.8

Q ss_pred             ccchhhHhhh--hcCCCCeeEEeecCCCCCC-CCcC-CCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCC
Q 037941           24 ISDLREVFED--LMQKDPIAISHPCRDIQEL-PEKL-ECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSL   99 (308)
Q Consensus        24 ~~~~~~~~~~--~~~~~l~~L~l~~~~~~~~-~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l   99 (308)
                      ++.+..++..  ...+++++|++++|.+..+ |..+ .+++|++|++++|.++ .++...|.++++|++|++++|.+..+
T Consensus        41 ~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~i~~~  119 (477)
T 2id5_A           41 KNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIVIL  119 (477)
T ss_dssp             SSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-SCCTTSSTTCTTCCEEECTTSCCCEE
T ss_pred             CCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCC-ccCcccccCCCCCCEEECCCCccccC
Confidence            3444444322  4577888888888888666 4444 8888888888888877 55665567888888888888888865


Q ss_pred             CCCCCCcccccccccccEEeecCCcCccc-chhhhCcCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCccccccc
Q 037941          100 PSTLGDVATVGVLKKLVIFSFRNSHIEQL-PEEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEVE  178 (308)
Q Consensus       100 p~~~~~~~~l~~l~~L~~L~l~~~~i~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~  178 (308)
                      ++..     +..+++|++|++++|.++.+ +..+..+++|+.|++++|. ++.++...+..+++|+.|++++|.+.+...
T Consensus       120 ~~~~-----~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~  193 (477)
T 2id5_A          120 LDYM-----FQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCN-LTSIPTEALSHLHGLIVLRLRHLNINAIRD  193 (477)
T ss_dssp             CTTT-----TTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCC-CSSCCHHHHTTCTTCCEEEEESCCCCEECT
T ss_pred             ChhH-----ccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCc-CcccChhHhcccCCCcEEeCCCCcCcEeCh
Confidence            4433     77788888888888877744 4567777888888888877 666776657777777777777777664332


Q ss_pred             CCc-----------------ccchhhhhcCCCCCEEEeeeccCccccchhhc--cCCceeEeeccCccc----ccCCCCc
Q 037941          179 GQN-----------------NASLAELNQLSRLTTLEMLILDAQVMPRELFS--LGLERNKIFLGDVWS----WTGKYET  235 (308)
Q Consensus       179 ~~~-----------------~~~~~~l~~l~~L~~L~l~~~~~~~~p~~~~~--~~L~~l~i~~~~~~~----~~~~~~~  235 (308)
                      ...                 ...+.......+|+.|++++|.++.+|.....  ++|+.|++..+.+..    .+..+++
T Consensus       194 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~  273 (477)
T 2id5_A          194 YSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLR  273 (477)
T ss_dssp             TCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTT
T ss_pred             hhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhcccccc
Confidence            100                 01112222334788888888888888865433  899999998776543    3567899


Q ss_pred             CceEEEeecCchhhhhhHHHHhcccceeecCCccchhhhhhccCCCCCCcccEEeccccc
Q 037941          236 SRTLKLKLDNRMYLEHGIKMLLRRTEDLHLDKLNGLQNVLHELDGEGFPRLKHLLVQNAS  295 (308)
Q Consensus       236 L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~  295 (308)
                      |+.|+|+.|...........-+++|++|++++ +.++.+.... ...+++|+.|++.+++
T Consensus       274 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~-~~~l~~L~~L~l~~N~  331 (477)
T 2id5_A          274 LQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSG-NQLTTLEESV-FHSVGNLETLILDSNP  331 (477)
T ss_dssp             CCEEECCSSCCSEECTTTBTTCTTCCEEECCS-SCCSCCCGGG-BSCGGGCCEEECCSSC
T ss_pred             CCEEECCCCccceECHHHhcCcccCCEEECCC-CcCceeCHhH-cCCCcccCEEEccCCC
Confidence            99999999876655333333349999999998 5666655433 3678999999999884

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.91  E-value=2.9e-23  Score=194.98  Aligned_cols=244  Identities=20%  Similarity=0.238  Sum_probs=154.8

Q ss_pred             CCCCeeEEeecCCCCCCCC-cC-CCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCCCCCCcccccccc
Q 037941           36 QKDPIAISHPCRDIQELPE-KL-ECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLK  113 (308)
Q Consensus        36 ~~~l~~L~l~~~~~~~~~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~~~~l~~l~  113 (308)
                      .+++++|++++|.+..+++ .+ .+++|++|++++|.+++ ++...|+++++|++|++++|.+..+|+.+     ++.++
T Consensus        74 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~l~~~~-----~~~l~  147 (597)
T 3oja_B           74 FRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRY-LPPHVFQNVPLLTVLVLERNDLSSLPRGI-----FHNTP  147 (597)
T ss_dssp             CCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTT-----TTTCT
T ss_pred             CCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCC-CCHHHHcCCCCCCEEEeeCCCCCCCCHHH-----hccCC
Confidence            5566666666666655543 33 66666666666666653 33333456666677777666666666653     46666


Q ss_pred             cccEEeecCCcCcccc-hhhhCcCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCcccc-----------------
Q 037941          114 KLVIFSFRNSHIEQLP-EEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHW-----------------  175 (308)
Q Consensus       114 ~L~~L~l~~~~i~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-----------------  175 (308)
                      +|++|++++|.++.++ ..++.+++|+.|++++|. ++.++.   +.+++|+.|++++|.+.+                 
T Consensus       148 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~---~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l  223 (597)
T 3oja_B          148 KLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR-LTHVDL---SLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSI  223 (597)
T ss_dssp             TCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSC-CSBCCG---GGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCC
T ss_pred             CCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCC-CCCcCh---hhhhhhhhhhcccCccccccCCchhheeeccCCcc
Confidence            6777777666666443 346666666777666665 444442   223333333333332221                 


Q ss_pred             --cccC------------CcccchhhhhcCCCCCEEEeeeccCcccc-chhhc-cCCceeEeeccCccc---ccCCCCcC
Q 037941          176 --EVEG------------QNNASLAELNQLSRLTTLEMLILDAQVMP-RELFS-LGLERNKIFLGDVWS---WTGKYETS  236 (308)
Q Consensus       176 --~~~~------------~~~~~~~~l~~l~~L~~L~l~~~~~~~~p-~~~~~-~~L~~l~i~~~~~~~---~~~~~~~L  236 (308)
                        ....            ..-..+..+..+++|+.|++++|.+..++ ..+.. ++|+.|++..+.+..   ....+++|
T Consensus       224 ~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L  303 (597)
T 3oja_B          224 NVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTL  303 (597)
T ss_dssp             CEEECSCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTC
T ss_pred             cccccccCCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCCcccccCCCC
Confidence              0000            00001245778889999999999887764 44433 889999988776544   34568899


Q ss_pred             ceEEEeecCchhhhhhHHHHhcccceeecCCccchhhhhhccCCCCCCcccEEeccccc
Q 037941          237 RTLKLKLDNRMYLEHGIKMLLRRTEDLHLDKLNGLQNVLHELDGEGFPRLKHLLVQNAS  295 (308)
Q Consensus       237 ~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~  295 (308)
                      +.|+|+.|.....+..+.. +++|++|++++ +.+..+    ..+.+++|+.|++++|+
T Consensus       304 ~~L~Ls~N~l~~i~~~~~~-l~~L~~L~L~~-N~l~~~----~~~~~~~L~~L~l~~N~  356 (597)
T 3oja_B          304 KVLDLSHNHLLHVERNQPQ-FDRLENLYLDH-NSIVTL----KLSTHHTLKNLTLSHND  356 (597)
T ss_dssp             CEEECCSSCCCCCGGGHHH-HTTCSEEECCS-SCCCCC----CCCTTCCCSEEECCSSC
T ss_pred             cEEECCCCCCCccCccccc-CCCCCEEECCC-CCCCCc----ChhhcCCCCEEEeeCCC
Confidence            9999999887766666655 49999999998 445543    35678999999999874

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.91  E-value=9.2e-24  Score=183.97  Aligned_cols=220  Identities=22%  Similarity=0.273  Sum_probs=136.6

Q ss_pred             CCCCeeEEeecCCCCCCCCcC-CCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCCCCCCccccccccc
Q 037941           36 QKDPIAISHPCRDIQELPEKL-ECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKK  114 (308)
Q Consensus        36 ~~~l~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~~~~l~~l~~  114 (308)
                      ..+++.|++++|.+..+|..+ .+++|++|++++|.++ .+|..+ .++++|++|++++|.+..+|..      ++.+++
T Consensus        80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~-~~l~~L~~L~Ls~n~l~~lp~~------l~~l~~  151 (328)
T 4fcg_A           80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM-ELPDTM-QQFAGLETLTLARNPLRALPAS------IASLNR  151 (328)
T ss_dssp             STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCC-CCCSCG-GGGTTCSEEEEESCCCCCCCGG------GGGCTT
T ss_pred             ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCcc-chhHHH-hccCCCCEEECCCCccccCcHH------HhcCcC
Confidence            466777777777776666655 6667777777776666 555544 4666677777777666666665      666666


Q ss_pred             ccEEeecCCcC-cccchhhhC---------cCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCcccccccCCcccc
Q 037941          115 LVIFSFRNSHI-EQLPEEIGQ---------LTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEVEGQNNAS  184 (308)
Q Consensus       115 L~~L~l~~~~i-~~l~~~~~~---------l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~  184 (308)
                      |++|++++|.+ ..+|..++.         +++|+.|++++|. ++.+|.. ++.+++|++|++++|.+.+        .
T Consensus       152 L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~lp~~-l~~l~~L~~L~L~~N~l~~--------l  221 (328)
T 4fcg_A          152 LRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTG-IRSLPAS-IANLQNLKSLKIRNSPLSA--------L  221 (328)
T ss_dssp             CCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEEC-CCCCCGG-GGGCTTCCEEEEESSCCCC--------C
T ss_pred             CCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCC-cCcchHh-hcCCCCCCEEEccCCCCCc--------C
Confidence            77777766543 355554443         6666666666665 4566655 5666666666666666551        2


Q ss_pred             hhhhhcCCCCCEEEeeeccCccccchhhccCCceeEeeccCcccccCCCCcCceEEEeecCchhh-hhhHHHHhccccee
Q 037941          185 LAELNQLSRLTTLEMLILDAQVMPRELFSLGLERNKIFLGDVWSWTGKYETSRTLKLKLDNRMYL-EHGIKMLLRRTEDL  263 (308)
Q Consensus       185 ~~~l~~l~~L~~L~l~~~~~~~~p~~~~~~~L~~l~i~~~~~~~~~~~~~~L~~L~L~~~~~~~~-~~~~~~~~~~L~~L  263 (308)
                      +..+..+++|+.|++++|.+..                  ..+..++.+++|+.|+|+.|..... +..+.. +++|++|
T Consensus       222 ~~~l~~l~~L~~L~Ls~n~~~~------------------~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~-l~~L~~L  282 (328)
T 4fcg_A          222 GPAIHHLPKLEELDLRGCTALR------------------NYPPIFGGRAPLKRLILKDCSNLLTLPLDIHR-LTQLEKL  282 (328)
T ss_dssp             CGGGGGCTTCCEEECTTCTTCC------------------BCCCCTTCCCCCCEEECTTCTTCCBCCTTGGG-CTTCCEE
T ss_pred             chhhccCCCCCEEECcCCcchh------------------hhHHHhcCCCCCCEEECCCCCchhhcchhhhc-CCCCCEE
Confidence            2345566666666666654211                  1233455667777777777654433 333333 4888888


Q ss_pred             ecCCccchhhhhhccCCCCCCcccEEecccc
Q 037941          264 HLDKLNGLQNVLHELDGEGFPRLKHLLVQNA  294 (308)
Q Consensus       264 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c  294 (308)
                      ++++|+.+..++..+  ..+++|+.+.+...
T Consensus       283 ~L~~n~~~~~iP~~l--~~L~~L~~l~l~~~  311 (328)
T 4fcg_A          283 DLRGCVNLSRLPSLI--AQLPANCIILVPPH  311 (328)
T ss_dssp             ECTTCTTCCCCCGGG--GGSCTTCEEECCGG
T ss_pred             eCCCCCchhhccHHH--hhccCceEEeCCHH
Confidence            888877777665544  56777777777653

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.91  E-value=8.5e-24  Score=191.50  Aligned_cols=231  Identities=20%  Similarity=0.248  Sum_probs=167.1

Q ss_pred             ecccchhhHhhhhcCCCCeeEEeecCCCCCCCC-cC-CCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCC
Q 037941           22 QIISDLREVFEDLMQKDPIAISHPCRDIQELPE-KL-ECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSL   99 (308)
Q Consensus        22 ~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l   99 (308)
                      +.+.++.++|. ...++++.|++++|.+..++. .+ .+++|++|++++|.++. ++...|.++++|++|++++|.+..+
T Consensus        50 c~~~~l~~iP~-~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~-i~~~~~~~l~~L~~L~L~~n~l~~~  127 (440)
T 3zyj_A           50 CVRKNLREVPD-GISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRT-IEIGAFNGLANLNTLELFDNRLTTI  127 (440)
T ss_dssp             CCSCCCSSCCS-CCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCE-ECGGGGTTCSSCCEEECCSSCCSSC
T ss_pred             eCCCCcCcCCC-CCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCc-cChhhccCCccCCEEECCCCcCCee
Confidence            44566777773 456788889999888877654 33 88899999999888874 4444457888999999999988888


Q ss_pred             CCCCCCcccccccccccEEeecCCcCcccch-hhhCcCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCccccccc
Q 037941          100 PSTLGDVATVGVLKKLVIFSFRNSHIEQLPE-EIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEVE  178 (308)
Q Consensus       100 p~~~~~~~~l~~l~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~  178 (308)
                      |...     +..+++|++|++++|.++.++. .+..+++|+.|++++|..++.++...+..+++|+.|++++|.+...  
T Consensus       128 ~~~~-----~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~--  200 (440)
T 3zyj_A          128 PNGA-----FVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI--  200 (440)
T ss_dssp             CTTT-----SCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSC--
T ss_pred             CHhH-----hhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccc--
Confidence            7754     7888889999999998887764 5788889999999887767888877688888999999998887722  


Q ss_pred             CCcccchhhhhcCCCCCEEEeeeccCccccchhhc--cCCceeEeeccCccc----ccCCCCcCceEEEeecCchhhhhh
Q 037941          179 GQNNASLAELNQLSRLTTLEMLILDAQVMPRELFS--LGLERNKIFLGDVWS----WTGKYETSRTLKLKLDNRMYLEHG  252 (308)
Q Consensus       179 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~~~~--~~L~~l~i~~~~~~~----~~~~~~~L~~L~L~~~~~~~~~~~  252 (308)
                             ..+..+++|+.|++++|.++.++...+.  ++|+.|++..+.+..    .+..+++|+.|+|+.|........
T Consensus       201 -------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~  273 (440)
T 3zyj_A          201 -------PNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHD  273 (440)
T ss_dssp             -------CCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTT
T ss_pred             -------cccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChh
Confidence                   2467788889999988887776544332  677777766555432    244566667777766655544433


Q ss_pred             HHHHhcccceeecCCc
Q 037941          253 IKMLLRRTEDLHLDKL  268 (308)
Q Consensus       253 ~~~~~~~L~~L~l~~~  268 (308)
                      ...-+++|+.|++++.
T Consensus       274 ~~~~l~~L~~L~L~~N  289 (440)
T 3zyj_A          274 LFTPLHHLERIHLHHN  289 (440)
T ss_dssp             TTSSCTTCCEEECCSS
T ss_pred             HhccccCCCEEEcCCC
Confidence            3232366666666653

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.91  E-value=8.4e-24  Score=192.20  Aligned_cols=230  Identities=23%  Similarity=0.212  Sum_probs=145.6

Q ss_pred             ecccchhhHhhhhcCCCCeeEEeecCCCCCCCC-cC-CCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCC
Q 037941           22 QIISDLREVFEDLMQKDPIAISHPCRDIQELPE-KL-ECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSL   99 (308)
Q Consensus        22 ~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l   99 (308)
                      +.+.++..+|. ...+++++|++++|.+..+++ .+ .+++|++|++++|.++.. +...|.++++|++|++++|.+..+
T Consensus        61 c~~~~l~~iP~-~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~  138 (452)
T 3zyi_A           61 CTRRGLSEVPQ-GIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQI-EVGAFNGLASLNTLELFDNWLTVI  138 (452)
T ss_dssp             CCSSCCSSCCS-CCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE-CTTTTTTCTTCCEEECCSSCCSBC
T ss_pred             ECCCCcCccCC-CCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCc-ChhhccCcccCCEEECCCCcCCcc
Confidence            34455666663 345677778887777766543 33 777788888877777643 333346777788888877777777


Q ss_pred             CCCCCCcccccccccccEEeecCCcCcccch-hhhCcCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCccccccc
Q 037941          100 PSTLGDVATVGVLKKLVIFSFRNSHIEQLPE-EIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEVE  178 (308)
Q Consensus       100 p~~~~~~~~l~~l~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~  178 (308)
                      |...     +..+++|++|++++|.++.+|. .+..+++|+.|++++|..++.++...+..+++|+.|++++|.+.+.  
T Consensus       139 ~~~~-----~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~--  211 (452)
T 3zyi_A          139 PSGA-----FEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM--  211 (452)
T ss_dssp             CTTT-----SSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC--
T ss_pred             Chhh-----hcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc--
Confidence            6654     6777778888887777776664 5677777888887776667777766677777788888777777622  


Q ss_pred             CCcccchhhhhcCCCCCEEEeeeccCccccchhhc--cCCceeEeeccCccc----ccCCCCcCceEEEeecCchhhhhh
Q 037941          179 GQNNASLAELNQLSRLTTLEMLILDAQVMPRELFS--LGLERNKIFLGDVWS----WTGKYETSRTLKLKLDNRMYLEHG  252 (308)
Q Consensus       179 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~~~~--~~L~~l~i~~~~~~~----~~~~~~~L~~L~L~~~~~~~~~~~  252 (308)
                             ..+..+++|+.|++++|.++.++...+.  ++|+.|++..+.+..    .+..+++|+.|+|+.|........
T Consensus       212 -------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~  284 (452)
T 3zyi_A          212 -------PNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHD  284 (452)
T ss_dssp             -------CCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred             -------ccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChH
Confidence                   2356677777777777776665443222  566666655444322    234455555555555544433333


Q ss_pred             HHHHhcccceeecCC
Q 037941          253 IKMLLRRTEDLHLDK  267 (308)
Q Consensus       253 ~~~~~~~L~~L~l~~  267 (308)
                      ....+++|+.|++.+
T Consensus       285 ~~~~l~~L~~L~L~~  299 (452)
T 3zyi_A          285 LFTPLRYLVELHLHH  299 (452)
T ss_dssp             SSTTCTTCCEEECCS
T ss_pred             HhccccCCCEEEccC
Confidence            222235555555554

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.91  E-value=1.6e-23  Score=178.89  Aligned_cols=258  Identities=17%  Similarity=0.187  Sum_probs=192.8

Q ss_pred             eecccchhhHhhhhcCCCCeeEEeecCCCCCCCCc-C-CCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCC-CC
Q 037941           21 IQIISDLREVFEDLMQKDPIAISHPCRDIQELPEK-L-ECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFH-FP   97 (308)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~   97 (308)
                      .+.+.++..+|. ...+++++|++++|.+..+++. + .+++|++|++++|.++...+.. +.++++|++|++++|. +.
T Consensus        17 ~c~~~~l~~ip~-~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~~l~   94 (285)
T 1ozn_A           17 SCPQQGLQAVPV-GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAA-FTGLALLEQLDLSDNAQLR   94 (285)
T ss_dssp             ECCSSCCSSCCT-TCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTT-TTTCTTCCEEECCSCTTCC
T ss_pred             EcCcCCcccCCc-CCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhh-cCCccCCCEEeCCCCCCcc
Confidence            455677888884 4578999999999999887754 4 8999999999999988544444 4789999999999997 88


Q ss_pred             CCCCCCCCcccccccccccEEeecCCcCccc-chhhhCcCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCccccc
Q 037941           98 SLPSTLGDVATVGVLKKLVIFSFRNSHIEQL-PEEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWE  176 (308)
Q Consensus        98 ~lp~~~~~~~~l~~l~~L~~L~l~~~~i~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~  176 (308)
                      .+++..     +..+++|++|++++|.++.+ |..+..+++|+.|++++|. ++.++...++.+++|+.|++++|.+.+.
T Consensus        95 ~~~~~~-----~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~  168 (285)
T 1ozn_A           95 SVDPAT-----FHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNA-LQALPDDTFRDLGNLTHLFLHGNRISSV  168 (285)
T ss_dssp             CCCTTT-----TTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCEE
T ss_pred             ccCHHH-----hcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCc-ccccCHhHhccCCCccEEECCCCccccc
Confidence            875443     88999999999999999966 5668899999999999998 7777776688999999999999988833


Q ss_pred             ccCCcccchhhhhcCCCCCEEEeeeccCccc-cchhhc-cCCceeEeeccCccc----ccCCCCcCceEEEeecCchhhh
Q 037941          177 VEGQNNASLAELNQLSRLTTLEMLILDAQVM-PRELFS-LGLERNKIFLGDVWS----WTGKYETSRTLKLKLDNRMYLE  250 (308)
Q Consensus       177 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-p~~~~~-~~L~~l~i~~~~~~~----~~~~~~~L~~L~L~~~~~~~~~  250 (308)
                      +.       ..+..+++|+.|++++|.++.+ |..+.. ++|+.|++..+.+..    .+..+++|+.|+|+.|.... +
T Consensus       169 ~~-------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c-~  240 (285)
T 1ozn_A          169 PE-------RAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC-D  240 (285)
T ss_dssp             CT-------TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC-S
T ss_pred             CH-------HHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccC-C
Confidence            22       3578899999999999998877 444443 889999988776544    35678899999999886543 2


Q ss_pred             hhHHHHhcccceeecCCccchhhhhhccCCCCCCcccEEecccc
Q 037941          251 HGIKMLLRRTEDLHLDKLNGLQNVLHELDGEGFPRLKHLLVQNA  294 (308)
Q Consensus       251 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c  294 (308)
                      ......+..++.+...........+..+....+..+...++.+|
T Consensus       241 ~~~~~~~~~l~~~~~~~~~~~c~~p~~l~g~~l~~l~~~~l~~C  284 (285)
T 1ozn_A          241 CRARPLWAWLQKFRGSSSEVPCSLPQRLAGRDLKRLAANDLQGC  284 (285)
T ss_dssp             GGGHHHHHHHHHCCSEECCCBEEESGGGTTCBGGGSCGGGSCCC
T ss_pred             CCcHHHHHHHHhcccccCccccCCchHhCCcChhhcCHHHhccC
Confidence            22223334455555443222222233343344566676677776

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.91  E-value=9.1e-23  Score=178.93  Aligned_cols=251  Identities=16%  Similarity=0.134  Sum_probs=166.4

Q ss_pred             ccchhhHhhhhcCCCCeeEEeecCCCCCCCCcCCCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCCCC
Q 037941           24 ISDLREVFEDLMQKDPIAISHPCRDIQELPEKLECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTL  103 (308)
Q Consensus        24 ~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~  103 (308)
                      +..+..++.....+++++|++++|.+..++....+++|++|++++|.+.. ++.  +..+++|++|++++|.....++. 
T Consensus        75 ~n~i~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~l~~n~i~~-~~~--~~~l~~L~~L~l~~n~~~~~~~~-  150 (347)
T 4fmz_A           75 GNQITDISPLSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNEDNISD-ISP--LANLTKMYSLNLGANHNLSDLSP-  150 (347)
T ss_dssp             SSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEECTTSCCCC-CGG--GTTCTTCCEEECTTCTTCCCCGG-
T ss_pred             CCccccchhhhcCCcCCEEEccCCcccCchHHcCCCcCCEEECcCCcccC-chh--hccCCceeEEECCCCCCcccccc-
Confidence            34555555556688999999999999888765599999999999998873 444  46899999999999865544443 


Q ss_pred             CCcccccccccccEEeecCCcCcccchhhhCcCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCcccccccCCccc
Q 037941          104 GDVATVGVLKKLVIFSFRNSHIEQLPEEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEVEGQNNA  183 (308)
Q Consensus       104 ~~~~~l~~l~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~  183 (308)
                           +..+++|++|++++|.+..++. +..+++|+.|++++|. +..++.  +..+++|+.+++++|.+.+.       
T Consensus       151 -----~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~-l~~~~~--~~~l~~L~~L~l~~n~l~~~-------  214 (347)
T 4fmz_A          151 -----LSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQ-IEDISP--LASLTSLHYFTAYVNQITDI-------  214 (347)
T ss_dssp             -----GTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSC-CCCCGG--GGGCTTCCEEECCSSCCCCC-------
T ss_pred             -----hhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCc-cccccc--ccCCCccceeecccCCCCCC-------
Confidence                 7778888888888888777666 7788888888888887 666655  66777777777777776621       


Q ss_pred             chhhhhcCCCCCEEEeeeccCccccchhhccCCceeEeeccCccc--ccCCCCcCceEEEeecCchhhhhhHHHHhcccc
Q 037941          184 SLAELNQLSRLTTLEMLILDAQVMPRELFSLGLERNKIFLGDVWS--WTGKYETSRTLKLKLDNRMYLEHGIKMLLRRTE  261 (308)
Q Consensus       184 ~~~~l~~l~~L~~L~l~~~~~~~~p~~~~~~~L~~l~i~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~  261 (308)
                        ..+..+++|++|++++|.++.++.....++|+.|++..+.+..  ....+++|+.|+++.|..... ..+.. +++|+
T Consensus       215 --~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~-l~~L~  290 (347)
T 4fmz_A          215 --TPVANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSNQISDI-SVLNN-LSQLN  290 (347)
T ss_dssp             --GGGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCC-GGGGG-CTTCS
T ss_pred             --chhhcCCcCCEEEccCCccCCCcchhcCCCCCEEECCCCccCCChhHhcCCCcCEEEccCCccCCC-hhhcC-CCCCC
Confidence              1255667777777777776666652223666666665554332  245566667777666644432 22222 36666


Q ss_pred             eeecCCccchhhhhhccCCCCCCcccEEeccccccccccc
Q 037941          262 DLHLDKLNGLQNVLHELDGEGFPRLKHLLVQNASEILYIV  301 (308)
Q Consensus       262 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~  301 (308)
                      +|+++++. ++...+.. ...+++|+.|++++|+ +..++
T Consensus       291 ~L~L~~n~-l~~~~~~~-l~~l~~L~~L~L~~n~-l~~~~  327 (347)
T 4fmz_A          291 SLFLNNNQ-LGNEDMEV-IGGLTNLTTLFLSQNH-ITDIR  327 (347)
T ss_dssp             EEECCSSC-CCGGGHHH-HHTCTTCSEEECCSSS-CCCCG
T ss_pred             EEECcCCc-CCCcChhH-hhccccCCEEEccCCc-ccccc
Confidence            66666643 33322211 1345666666666663 44443

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.91  E-value=7.9e-24  Score=204.66  Aligned_cols=259  Identities=13%  Similarity=0.115  Sum_probs=190.4

Q ss_pred             hHhhh-hcCCCCeeEEeecCCCCC------------------CCCcC---CCCCccEEEecCCCCcCCCCchhhcCCCCc
Q 037941           29 EVFED-LMQKDPIAISHPCRDIQE------------------LPEKL---ECPKLKLFFLFSEKLSLVIPDLFFEGVPSL   86 (308)
Q Consensus        29 ~~~~~-~~~~~l~~L~l~~~~~~~------------------~~~~~---~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L   86 (308)
                      .+|.. ..+++|+.|++++|.+..                  +|..+   .+++|++|++++|.+.+.+|..+ .++++|
T Consensus       439 ~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l-~~L~~L  517 (876)
T 4ecn_A          439 FISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFL-YDLPEL  517 (876)
T ss_dssp             EECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGG-GGCSSC
T ss_pred             chhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHH-hCCCCC
Confidence            35643 568899999999999976                  88876   69999999999999998888766 789999


Q ss_pred             cEEEccCCC-CCC--CCCCCCCcc-cccccccccEEeecCCcCcccch--hhhCcCCCCEEecCCCCCCCccCcchhcCC
Q 037941           87 QVLSLNGFH-FPS--LPSTLGDVA-TVGVLKKLVIFSFRNSHIEQLPE--EIGQLTRLKLLDLSTCSKLKSIRPNVISNL  160 (308)
Q Consensus        87 ~~L~l~~~~-~~~--lp~~~~~~~-~l~~l~~L~~L~l~~~~i~~l~~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l  160 (308)
                      ++|++++|. ++.  +|..++.+. .+..+++|++|++++|.++.+|.  .++.+++|+.|++++|. ++.+| . ++.+
T Consensus       518 ~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~-l~~lp-~-~~~L  594 (876)
T 4ecn_A          518 QSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNK-VRHLE-A-FGTN  594 (876)
T ss_dssp             CEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSC-CCBCC-C-CCTT
T ss_pred             CEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCC-cccch-h-hcCC
Confidence            999999998 874  887621111 12334499999999999999998  89999999999999998 66888 4 8999


Q ss_pred             CCCceEEccCCcccccccCCcccchhhhhcCCC-CCEEEeeeccCccccchhhc---cCCceeEeeccCcccccC-----
Q 037941          161 PRLEELYMGNSFTHWEVEGQNNASLAELNQLSR-LTTLEMLILDAQVMPRELFS---LGLERNKIFLGDVWSWTG-----  231 (308)
Q Consensus       161 ~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~p~~~~~---~~L~~l~i~~~~~~~~~~-----  231 (308)
                      ++|+.|++++|.+.        ..+..+..+++ |+.|++++|.++.+|..+..   .+|+.|++..+.+....+     
T Consensus       595 ~~L~~L~Ls~N~l~--------~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~  666 (876)
T 4ecn_A          595 VKLTDLKLDYNQIE--------EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCS  666 (876)
T ss_dssp             SEESEEECCSSCCS--------CCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSC
T ss_pred             CcceEEECcCCccc--------cchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhh
Confidence            99999999999988        33456888888 99999999999888877654   348888887666532211     


Q ss_pred             ----CCCcCceEEEeecCchhhhhhHHHHhcccceeecCCccchhhhhhccCC------CCCCcccEEeccccccccccc
Q 037941          232 ----KYETSRTLKLKLDNRMYLEHGIKMLLRRTEDLHLDKLNGLQNVLHELDG------EGFPRLKHLLVQNASEILYIV  301 (308)
Q Consensus       232 ----~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~------~~~~~L~~L~l~~c~~l~~i~  301 (308)
                          ..++|+.|+|+.|.....+..+...+++|+.|++++ +.++.++.....      ..+++|+.|++++| ++..+|
T Consensus       667 l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~-N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N-~L~~lp  744 (876)
T 4ecn_A          667 MDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSN-NLMTSIPENSLKPKDGNYKNTYLLTTIDLRFN-KLTSLS  744 (876)
T ss_dssp             TTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCS-CCCSCCCTTSSSCTTSCCTTGGGCCEEECCSS-CCCCCC
T ss_pred             hccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCC-CcCCccChHHhccccccccccCCccEEECCCC-CCccch
Confidence                223677777777766655554443346677777766 344443322211      11226666666666 555555

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.91  E-value=1.3e-23  Score=183.24  Aligned_cols=249  Identities=18%  Similarity=0.196  Sum_probs=161.1

Q ss_pred             ccchhhHhhhhcCCCCeeEEeecCCCCCCCC-cC-CCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCC
Q 037941           24 ISDLREVFEDLMQKDPIAISHPCRDIQELPE-KL-ECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPS  101 (308)
Q Consensus        24 ~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~  101 (308)
                      +.++..+|. ...+++++|++++|.+..+++ .+ .+++|++|++++|.++...+.. +.++++|++|++++|.+..+|.
T Consensus        42 ~~~l~~ip~-~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~l~~  119 (332)
T 2ft3_A           42 DLGLKAVPK-EISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKA-FSPLRKLQKLYISKNHLVEIPP  119 (332)
T ss_dssp             SSCCSSCCS-CCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGG-STTCTTCCEEECCSSCCCSCCS
T ss_pred             CCCccccCC-CCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhH-hhCcCCCCEEECCCCcCCccCc
Confidence            344555552 235677777777777766544 33 7777777777777766433433 3667777777777777777777


Q ss_pred             CCCCcccccccccccEEeecCCcCcccch-hhhCcCCCCEEecCCCCCCCc--cCcchhcCCCCCceEEccCCccccccc
Q 037941          102 TLGDVATVGVLKKLVIFSFRNSHIEQLPE-EIGQLTRLKLLDLSTCSKLKS--IRPNVISNLPRLEELYMGNSFTHWEVE  178 (308)
Q Consensus       102 ~~~~~~~l~~l~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~l~~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~  178 (308)
                      .      +.  ++|++|++++|.++.+|. .+..+++|+.|++++|. ++.  .....+..+ +|+.|++++|.+...+.
T Consensus       120 ~------~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~~  189 (332)
T 2ft3_A          120 N------LP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNP-LENSGFEPGAFDGL-KLNYLRISEAKLTGIPK  189 (332)
T ss_dssp             S------CC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCC-CBGGGSCTTSSCSC-CCSCCBCCSSBCSSCCS
T ss_pred             c------cc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCc-cccCCCCcccccCC-ccCEEECcCCCCCccCc
Confidence            6      32  677777777777776654 36677777777777776 331  222225555 77777777777663221


Q ss_pred             CCcccchhhhhcCCCCCEEEeeeccCccccch-hhc-cCCceeEeeccCccc----ccCCCCcCceEEEeecCchhhhhh
Q 037941          179 GQNNASLAELNQLSRLTTLEMLILDAQVMPRE-LFS-LGLERNKIFLGDVWS----WTGKYETSRTLKLKLDNRMYLEHG  252 (308)
Q Consensus       179 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~-~~~-~~L~~l~i~~~~~~~----~~~~~~~L~~L~L~~~~~~~~~~~  252 (308)
                              .+  .++|++|++++|.++.++.. +.. ++|+.|++..+.+..    ++..+++|+.|+|+.|.....+..
T Consensus       190 --------~~--~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~  259 (332)
T 2ft3_A          190 --------DL--PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAG  259 (332)
T ss_dssp             --------SS--CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTT
T ss_pred             --------cc--cCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecChh
Confidence                    11  25788888888887777643 322 788888887665433    356778888888888876655555


Q ss_pred             HHHHhcccceeecCCccchhhhhhccCCC-----CCCcccEEecccccc
Q 037941          253 IKMLLRRTEDLHLDKLNGLQNVLHELDGE-----GFPRLKHLLVQNASE  296 (308)
Q Consensus       253 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-----~~~~L~~L~l~~c~~  296 (308)
                      +..+ ++|++|++++ +.++.++......     .++.|+.|++.+++-
T Consensus       260 l~~l-~~L~~L~l~~-N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~  306 (332)
T 2ft3_A          260 LPDL-KLLQVVYLHT-NNITKVGVNDFCPVGFGVKRAYYNGISLFNNPV  306 (332)
T ss_dssp             GGGC-TTCCEEECCS-SCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSS
T ss_pred             hhcC-ccCCEEECCC-CCCCccChhHccccccccccccccceEeecCcc
Confidence            5553 8888999887 5666654432221     256788888888863

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.91  E-value=2.1e-23  Score=195.98  Aligned_cols=254  Identities=16%  Similarity=0.197  Sum_probs=175.3

Q ss_pred             cCCCCeeEEeecCCCCCCCCcC--CCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCCCCCCccccccc
Q 037941           35 MQKDPIAISHPCRDIQELPEKL--ECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVL  112 (308)
Q Consensus        35 ~~~~l~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~~~~l~~l  112 (308)
                      ..++++.+++.++.+..+|+..  .+++|++|++++|.+++..+.. +..+++|++|++++|.+..+|+..     ++.+
T Consensus        49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~-----~~~l  122 (597)
T 3oja_B           49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYA-FAYAHTIQKLYMGFNAIRYLPPHV-----FQNV  122 (597)
T ss_dssp             GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTT-TTTCTTCCEEECCSSCCCCCCTTT-----TTTC
T ss_pred             cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHH-hcCCCCCCEEECCCCcCCCCCHHH-----HcCC
Confidence            3678999999999999998875  8999999999999988544444 579999999999999999888764     7999


Q ss_pred             ccccEEeecCCcCcccchh-hhCcCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCcccccccCCccc--------
Q 037941          113 KKLVIFSFRNSHIEQLPEE-IGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEVEGQNNA--------  183 (308)
Q Consensus       113 ~~L~~L~l~~~~i~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~--------  183 (308)
                      ++|++|++++|.++.+|.. ++.+++|+.|++++|. +..++...++.+++|+.|++++|.+.+...+....        
T Consensus       123 ~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~  201 (597)
T 3oja_B          123 PLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSY  201 (597)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCS
T ss_pred             CCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCc-CCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhccc
Confidence            9999999999999988876 5899999999999998 66666655899999999999999988432210000        


Q ss_pred             -chhhhhcCCCCCEEEeeeccCccccchhhccCCceeEeeccCcc--cccCCCCcCceEEEeecCchhhh-hhHHHHhcc
Q 037941          184 -SLAELNQLSRLTTLEMLILDAQVMPRELFSLGLERNKIFLGDVW--SWTGKYETSRTLKLKLDNRMYLE-HGIKMLLRR  259 (308)
Q Consensus       184 -~~~~l~~l~~L~~L~l~~~~~~~~p~~~~~~~L~~l~i~~~~~~--~~~~~~~~L~~L~L~~~~~~~~~-~~~~~~~~~  259 (308)
                       .+..+...+.|+.|++++|.+..+|.... .+|+.|++..+.+.  .+...+++|+.|+|+.|...... ..+.. +++
T Consensus       202 n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~-~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~-l~~  279 (597)
T 3oja_B          202 NLLSTLAIPIAVEELDASHNSINVVRGPVN-VELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVK-MQR  279 (597)
T ss_dssp             SCCSEEECCTTCSEEECCSSCCCEEECSCC-SCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTT-CSS
T ss_pred             CccccccCCchhheeeccCCcccccccccC-CCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHHHhcC-ccC
Confidence             00111223345555555555554444322 45666666554432  24556667777777666544432 22222 366


Q ss_pred             cceeecCCccchhhhhhccCCCCCCcccEEeccccccccccc
Q 037941          260 TEDLHLDKLNGLQNVLHELDGEGFPRLKHLLVQNASEILYIV  301 (308)
Q Consensus       260 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~  301 (308)
                      |+.|++++ +.++.++..  ...+++|+.|++++| .+..+|
T Consensus       280 L~~L~Ls~-N~l~~l~~~--~~~l~~L~~L~Ls~N-~l~~i~  317 (597)
T 3oja_B          280 LERLYISN-NRLVALNLY--GQPIPTLKVLDLSHN-HLLHVE  317 (597)
T ss_dssp             CCEEECTT-SCCCEEECS--SSCCTTCCEEECCSS-CCCCCG
T ss_pred             CCEEECCC-CCCCCCCcc--cccCCCCcEEECCCC-CCCccC
Confidence            66666666 444443221  244566666666666 444444

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.91  E-value=2.2e-22  Score=176.47  Aligned_cols=247  Identities=14%  Similarity=0.161  Sum_probs=192.7

Q ss_pred             ccchhhHhhhhcCCCCeeEEeecCCCCCCCCcCCCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCCCC
Q 037941           24 ISDLREVFEDLMQKDPIAISHPCRDIQELPEKLECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTL  103 (308)
Q Consensus        24 ~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~  103 (308)
                      +..+..++.....+++++|++++|.+..+++...+++|++|++++|.++. ++.  +.++++|++|++++|.+..+|.  
T Consensus        53 ~~~i~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~-~~~--~~~l~~L~~L~l~~n~i~~~~~--  127 (347)
T 4fmz_A           53 GEKVASIQGIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITD-ISA--LQNLTNLRELYLNEDNISDISP--  127 (347)
T ss_dssp             SSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC-CGG--GTTCTTCSEEECTTSCCCCCGG--
T ss_pred             CCccccchhhhhcCCccEEEccCCccccchhhhcCCcCCEEEccCCcccC-chH--HcCCCcCCEEECcCCcccCchh--
Confidence            45555566556688999999999999888874499999999999998874 442  5789999999999999988876  


Q ss_pred             CCcccccccccccEEeecCCcCcccchhhhCcCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCcccccccCCccc
Q 037941          104 GDVATVGVLKKLVIFSFRNSHIEQLPEEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEVEGQNNA  183 (308)
Q Consensus       104 ~~~~~l~~l~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~  183 (308)
                           +..+++|++|++++|.....+..+..+++|+.|++++|. +..++.  +..+++|+.|++++|.+.+        
T Consensus       128 -----~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~--~~~l~~L~~L~l~~n~l~~--------  191 (347)
T 4fmz_A          128 -----LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESK-VKDVTP--IANLTDLYSLSLNYNQIED--------  191 (347)
T ss_dssp             -----GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSC-CCCCGG--GGGCTTCSEEECTTSCCCC--------
T ss_pred             -----hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCC-cCCchh--hccCCCCCEEEccCCcccc--------
Confidence                 778999999999999655344448999999999999998 666665  7889999999999998772        


Q ss_pred             chhhhhcCCCCCEEEeeeccCccccchhhccCCceeEeeccCcccc--cCCCCcCceEEEeecCchhhhhhHHHHhcccc
Q 037941          184 SLAELNQLSRLTTLEMLILDAQVMPRELFSLGLERNKIFLGDVWSW--TGKYETSRTLKLKLDNRMYLEHGIKMLLRRTE  261 (308)
Q Consensus       184 ~~~~l~~l~~L~~L~l~~~~~~~~p~~~~~~~L~~l~i~~~~~~~~--~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~  261 (308)
                       ...+..+++|+.+++++|.+..++.....++|+.|++..+.+...  ...+++|+.|+++.|..... ..+.. +++|+
T Consensus       192 -~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~-l~~L~  268 (347)
T 4fmz_A          192 -ISPLASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDI-NAVKD-LTKLK  268 (347)
T ss_dssp             -CGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCC-GGGTT-CTTCC
T ss_pred             -cccccCCCccceeecccCCCCCCchhhcCCcCCEEEccCCccCCCcchhcCCCCCEEECCCCccCCC-hhHhc-CCCcC
Confidence             223778999999999999988877743448999999887765443  56788999999998865553 33444 48999


Q ss_pred             eeecCCccchhhhhhccCCCCCCcccEEeccccccccc
Q 037941          262 DLHLDKLNGLQNVLHELDGEGFPRLKHLLVQNASEILY  299 (308)
Q Consensus       262 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~  299 (308)
                      +|+++++ .++.+..   ...+++|+.|++++| .+..
T Consensus       269 ~L~l~~n-~l~~~~~---~~~l~~L~~L~L~~n-~l~~  301 (347)
T 4fmz_A          269 MLNVGSN-QISDISV---LNNLSQLNSLFLNNN-QLGN  301 (347)
T ss_dssp             EEECCSS-CCCCCGG---GGGCTTCSEEECCSS-CCCG
T ss_pred             EEEccCC-ccCCChh---hcCCCCCCEEECcCC-cCCC
Confidence            9999984 5555422   256789999999998 4443

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.91  E-value=3.8e-24  Score=202.23  Aligned_cols=225  Identities=10%  Similarity=0.093  Sum_probs=177.7

Q ss_pred             chhhHhhh-hcCCCCeeEEeecCCCCC------------------CCCcC---CCCCccEEEecCCCCcCCCCchhhcCC
Q 037941           26 DLREVFED-LMQKDPIAISHPCRDIQE------------------LPEKL---ECPKLKLFFLFSEKLSLVIPDLFFEGV   83 (308)
Q Consensus        26 ~~~~~~~~-~~~~~l~~L~l~~~~~~~------------------~~~~~---~~~~L~~L~l~~~~~~~~~~~~~~~~l   83 (308)
                      .+..+|.. ...+++++|++++|.+..                  +|..+   .+++|++|++++|.+.+.+|..+ .++
T Consensus       194 ~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l-~~l  272 (636)
T 4eco_A          194 NITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFL-KAL  272 (636)
T ss_dssp             EEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTT-TTC
T ss_pred             CCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHH-hcC
Confidence            33345643 568899999999999976                  88766   49999999999999998888776 689


Q ss_pred             CCccEEEccCCC-CC--CCCCCCCCccccccc------ccccEEeecCCcCcccch--hhhCcCCCCEEecCCCCCCCcc
Q 037941           84 PSLQVLSLNGFH-FP--SLPSTLGDVATVGVL------KKLVIFSFRNSHIEQLPE--EIGQLTRLKLLDLSTCSKLKSI  152 (308)
Q Consensus        84 ~~L~~L~l~~~~-~~--~lp~~~~~~~~l~~l------~~L~~L~l~~~~i~~l~~--~~~~l~~L~~L~l~~~~~~~~~  152 (308)
                      ++|++|++++|. ++  .+|..      ++.+      ++|++|++++|.++.+|.  .++.+++|+.|++++|.....+
T Consensus       273 ~~L~~L~Ls~n~~l~~~~lp~~------~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~i  346 (636)
T 4eco_A          273 PEMQLINVACNRGISGEQLKDD------WQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKL  346 (636)
T ss_dssp             SSCCEEECTTCTTSCHHHHHHH------HHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEEC
T ss_pred             CCCCEEECcCCCCCccccchHH------HHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccch
Confidence            999999999998 87  48887      6665      999999999999999998  8999999999999999833388


Q ss_pred             CcchhcCCCCCceEEccCCcccccccCCcccchhhhhcCCC-CCEEEeeeccCccccchhhc---cCCceeEeeccCccc
Q 037941          153 RPNVISNLPRLEELYMGNSFTHWEVEGQNNASLAELNQLSR-LTTLEMLILDAQVMPRELFS---LGLERNKIFLGDVWS  228 (308)
Q Consensus       153 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~p~~~~~---~~L~~l~i~~~~~~~  228 (308)
                      | . ++.+++|+.|++++|.+.        ..+..+..+++ |+.|++++|.++.+|..+..   .+|+.|++..+.+..
T Consensus       347 p-~-~~~l~~L~~L~L~~N~l~--------~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~  416 (636)
T 4eco_A          347 P-A-FGSEIKLASLNLAYNQIT--------EIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGS  416 (636)
T ss_dssp             C-C-CEEEEEESEEECCSSEEE--------ECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTT
T ss_pred             h-h-hCCCCCCCEEECCCCccc--------cccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCC
Confidence            8 4 889999999999999887        34456888888 99999999998888887654   367888877665432


Q ss_pred             ----ccC-------CCCcCceEEEeecCchhhhhhHHHHhcccceeecCC
Q 037941          229 ----WTG-------KYETSRTLKLKLDNRMYLEHGIKMLLRRTEDLHLDK  267 (308)
Q Consensus       229 ----~~~-------~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~  267 (308)
                          .++       .+++|+.|+|+.|.....+..+...+++|++|++++
T Consensus       417 ~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~  466 (636)
T 4eco_A          417 VDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMG  466 (636)
T ss_dssp             TTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCS
T ss_pred             cchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCC
Confidence                233       455777788877766554444444346666666666

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.90  E-value=4.7e-23  Score=198.88  Aligned_cols=251  Identities=17%  Similarity=0.135  Sum_probs=176.6

Q ss_pred             CCCCeeEEeecCCCC-CCCCcC-CCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCC-CCCCCCCCccccccc
Q 037941           36 QKDPIAISHPCRDIQ-ELPEKL-ECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFP-SLPSTLGDVATVGVL  112 (308)
Q Consensus        36 ~~~l~~L~l~~~~~~-~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~lp~~~~~~~~l~~l  112 (308)
                      .+++++|++++|.+. .+|..+ .+++|++|++++|.+++.+|..+ ..+++|++|++++|.+. .+|..      +..+
T Consensus       393 ~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l-~~l~~L~~L~L~~n~l~~~~p~~------~~~l  465 (768)
T 3rgz_A          393 KNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSL-GSLSKLRDLKLWLNMLEGEIPQE------LMYV  465 (768)
T ss_dssp             TCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGG-GGCTTCCEEECCSSCCCSCCCGG------GGGC
T ss_pred             cCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHH-hcCCCCCEEECCCCcccCcCCHH------HcCC
Confidence            456777777777773 556555 78888888888888776666665 67888888888888887 56666      7788


Q ss_pred             ccccEEeecCCcCc-ccchhhhCcCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCcccccccCCcccchhhhhcC
Q 037941          113 KKLVIFSFRNSHIE-QLPEEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEVEGQNNASLAELNQL  191 (308)
Q Consensus       113 ~~L~~L~l~~~~i~-~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l  191 (308)
                      ++|++|++++|.++ .+|..++.+++|+.|++++|.....+|.. ++.+++|++|++++|.+.+..       +..+..+
T Consensus       466 ~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~-~~~l~~L~~L~L~~N~l~~~~-------p~~l~~l  537 (768)
T 3rgz_A          466 KTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKW-IGRLENLAILKLSNNSFSGNI-------PAELGDC  537 (768)
T ss_dssp             TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGG-GGGCTTCCEEECCSSCCEEEC-------CGGGGGC
T ss_pred             CCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChH-HhcCCCCCEEECCCCcccCcC-------CHHHcCC
Confidence            88888888888877 77777888888888888888855567766 778888888888888877333       3677888


Q ss_pred             CCCCEEEeeeccCc-cccchhhc---------------------------------------------------------
Q 037941          192 SRLTTLEMLILDAQ-VMPRELFS---------------------------------------------------------  213 (308)
Q Consensus       192 ~~L~~L~l~~~~~~-~~p~~~~~---------------------------------------------------------  213 (308)
                      ++|+.|++++|.+. .+|..++.                                                         
T Consensus       538 ~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~  617 (768)
T 3rgz_A          538 RSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITS  617 (768)
T ss_dssp             TTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTS
T ss_pred             CCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhcccccccccccc
Confidence            88899998888754 55554321                                                         


Q ss_pred             --------------cCCceeEeeccC----cccccCCCCcCceEEEeecCchhh-hhhHHHHhcccceeecCCccchhhh
Q 037941          214 --------------LGLERNKIFLGD----VWSWTGKYETSRTLKLKLDNRMYL-EHGIKMLLRRTEDLHLDKLNGLQNV  274 (308)
Q Consensus       214 --------------~~L~~l~i~~~~----~~~~~~~~~~L~~L~L~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~  274 (308)
                                    .+|+.|+++.+.    ++..++.++.|+.|+|+.|..... +..+..+ ++|+.|++++++....+
T Consensus       618 ~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L-~~L~~LdLs~N~l~g~i  696 (768)
T 3rgz_A          618 RVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDL-RGLNILDLSSNKLDGRI  696 (768)
T ss_dssp             CEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGC-TTCCEEECCSSCCEECC
T ss_pred             ceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCC-CCCCEEECCCCcccCcC
Confidence                          345556665443    344566777888888888766533 4444443 88888888874333333


Q ss_pred             hhccCCCCCCcccEEeccccccccccccCc
Q 037941          275 LHELDGEGFPRLKHLLVQNASEILYIVSSV  304 (308)
Q Consensus       275 ~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~  304 (308)
                      +..+  +.++.|++|++++|+--..||...
T Consensus       697 p~~l--~~l~~L~~L~ls~N~l~g~iP~~~  724 (768)
T 3rgz_A          697 PQAM--SALTMLTEIDLSNNNLSGPIPEMG  724 (768)
T ss_dssp             CGGG--GGCCCCSEEECCSSEEEEECCSSS
T ss_pred             ChHH--hCCCCCCEEECcCCcccccCCCch
Confidence            3323  567788888888886666666543

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.90  E-value=1.5e-23  Score=198.16  Aligned_cols=253  Identities=13%  Similarity=0.118  Sum_probs=119.5

Q ss_pred             CCCCeeEEeecCC-CC--CCCCcC-CC------CCccEEEecCCCCcCCCCc-hhhcCCCCccEEEccCCCCC-CCCCCC
Q 037941           36 QKDPIAISHPCRD-IQ--ELPEKL-EC------PKLKLFFLFSEKLSLVIPD-LFFEGVPSLQVLSLNGFHFP-SLPSTL  103 (308)
Q Consensus        36 ~~~l~~L~l~~~~-~~--~~~~~~-~~------~~L~~L~l~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~-~lp~~~  103 (308)
                      .+++++|++++|. +.  .+|..+ .+      ++|++|++++|.++ .+|. ..++++++|++|++++|.+. .+| . 
T Consensus       272 l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~-  348 (636)
T 4eco_A          272 LPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-A-  348 (636)
T ss_dssp             CSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-C-
T ss_pred             CCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-h-
Confidence            4455555555554 42  244333 22      45555555555554 4444 11244555555555555554 444 3 


Q ss_pred             CCcccccccccccEEeecCCcCcccchhhhCcCC-CCEEecCCCCCCCccCcchhcCCC--CCceEEccCCcccccccCC
Q 037941          104 GDVATVGVLKKLVIFSFRNSHIEQLPEEIGQLTR-LKLLDLSTCSKLKSIRPNVISNLP--RLEELYMGNSFTHWEVEGQ  180 (308)
Q Consensus       104 ~~~~~l~~l~~L~~L~l~~~~i~~l~~~~~~l~~-L~~L~l~~~~~~~~~~~~~~~~l~--~L~~L~l~~~~~~~~~~~~  180 (308)
                           ++.+++|++|++++|.++.+|..+..+++ |+.|++++|. ++.+|.. +..+.  +|+.|++++|.+.+..+..
T Consensus       349 -----~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~-l~~lp~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~  421 (636)
T 4eco_A          349 -----FGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNK-LKYIPNI-FDAKSVSVMSAIDFSYNEIGSVDGKN  421 (636)
T ss_dssp             -----CEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSC-CSSCCSC-CCTTCSSCEEEEECCSSCTTTTTTCS
T ss_pred             -----hCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCc-Ccccchh-hhhcccCccCEEECcCCcCCCcchhh
Confidence                 44444455555544444444444444444 4444444444 3344432 22222  3444444444433211100


Q ss_pred             c-----------------------ccch-hhhhcCCCCCEEEeeeccCccccchhhc-c--------CCceeEeeccCcc
Q 037941          181 N-----------------------NASL-AELNQLSRLTTLEMLILDAQVMPRELFS-L--------GLERNKIFLGDVW  227 (308)
Q Consensus       181 ~-----------------------~~~~-~~l~~l~~L~~L~l~~~~~~~~p~~~~~-~--------~L~~l~i~~~~~~  227 (308)
                      .                       ...+ ..+..+++|+.|++++|.++.+|...+. .        +|+.|++..+.+.
T Consensus       422 l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~  501 (636)
T 4eco_A          422 FDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT  501 (636)
T ss_dssp             SCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC
T ss_pred             hcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCC
Confidence            0                       0111 2234466666666666666666665544 1        5666666555432


Q ss_pred             c---ccC--CCCcCceEEEeecCchhhhhhHHHHhcccceeecCCc-----cc-hhhhhhccCCCCCCcccEEecccccc
Q 037941          228 S---WTG--KYETSRTLKLKLDNRMYLEHGIKMLLRRTEDLHLDKL-----NG-LQNVLHELDGEGFPRLKHLLVQNASE  296 (308)
Q Consensus       228 ~---~~~--~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~-----~~-~~~~~~~~~~~~~~~L~~L~l~~c~~  296 (308)
                      .   ...  .+++|+.|+|+.|.....+..+..+ ++|+.|+++++     +. ...++..+  ..+++|+.|++++| +
T Consensus       502 ~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l-~~L~~L~Ls~N~~ls~N~l~~~~p~~l--~~l~~L~~L~Ls~N-~  577 (636)
T 4eco_A          502 KLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNS-STLKGFGIRNQRDAQGNRTLREWPEGI--TLCPSLTQLQIGSN-D  577 (636)
T ss_dssp             BCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGC-SSCCEEECCSCBCTTCCBCCCCCCTTG--GGCSSCCEEECCSS-C
T ss_pred             ccChhhhhccCCCcCEEECCCCCCCCcChhhhcC-CCCCEEECCCCcccccCcccccChHHH--hcCCCCCEEECCCC-c
Confidence            2   222  5566667776666555444444443 66666666431     11 22221111  34566666666666 4


Q ss_pred             cccccc
Q 037941          297 ILYIVS  302 (308)
Q Consensus       297 l~~i~~  302 (308)
                      +..||.
T Consensus       578 l~~ip~  583 (636)
T 4eco_A          578 IRKVNE  583 (636)
T ss_dssp             CCBCCS
T ss_pred             CCccCH
Confidence            455554

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.90  E-value=4.6e-23  Score=179.51  Aligned_cols=188  Identities=20%  Similarity=0.270  Sum_probs=150.6

Q ss_pred             ccchhhHhhh-hcCCCCeeEEeecCCCCCCCCcC-CCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCC-CCC
Q 037941           24 ISDLREVFED-LMQKDPIAISHPCRDIQELPEKL-ECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFP-SLP  100 (308)
Q Consensus        24 ~~~~~~~~~~-~~~~~l~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~lp  100 (308)
                      +..+..+|.. ...+++++|++++|.+..+|..+ .+++|++|++++|.++ .+|..+ .++++|++|++++|.+. .+|
T Consensus        90 ~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l-~~l~~L~~L~L~~n~~~~~~p  167 (328)
T 4fcg_A           90 SVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLR-ALPASI-ASLNRLRELSIRACPELTELP  167 (328)
T ss_dssp             SSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCC-CCCGGG-GGCTTCCEEEEEEETTCCCCC
T ss_pred             CCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccc-cCcHHH-hcCcCCCEEECCCCCCccccC
Confidence            4556666643 45889999999999999999877 9999999999999998 778775 78999999999997655 788


Q ss_pred             CCCCC---cccccccccccEEeecCCcCcccchhhhCcCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCcccccc
Q 037941          101 STLGD---VATVGVLKKLVIFSFRNSHIEQLPEEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEV  177 (308)
Q Consensus       101 ~~~~~---~~~l~~l~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~  177 (308)
                      ..++.   ...+..+++|++|++++|.++.+|..++.+++|+.|++++|. ++.+|.. ++.+++|++|++++|.+.+. 
T Consensus       168 ~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~-l~~l~~~-l~~l~~L~~L~Ls~n~~~~~-  244 (328)
T 4fcg_A          168 EPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSP-LSALGPA-IHHLPKLEELDLRGCTALRN-  244 (328)
T ss_dssp             SCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSC-CCCCCGG-GGGCTTCCEEECTTCTTCCB-
T ss_pred             hhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCC-CCcCchh-hccCCCCCEEECcCCcchhh-
Confidence            87200   011234999999999999999999999999999999999998 7788876 89999999999999987733 


Q ss_pred             cCCcccchhhhhcCCCCCEEEeeecc-Cccccchhhc-cCCceeEee
Q 037941          178 EGQNNASLAELNQLSRLTTLEMLILD-AQVMPRELFS-LGLERNKIF  222 (308)
Q Consensus       178 ~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~p~~~~~-~~L~~l~i~  222 (308)
                            .+..+..+++|+.|++++|. .+.+|..+.. ++|+.|++.
T Consensus       245 ------~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~  285 (328)
T 4fcg_A          245 ------YPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLR  285 (328)
T ss_dssp             ------CCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECT
T ss_pred             ------hHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCC
Confidence                  33578889999999999975 4455555333 445554443

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.90  E-value=6.6e-23  Score=192.84  Aligned_cols=173  Identities=16%  Similarity=0.121  Sum_probs=131.5

Q ss_pred             eecccchhhHhhhhcCCCCeeEEeecCCCCCCCC-cC-CCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCC
Q 037941           21 IQIISDLREVFEDLMQKDPIAISHPCRDIQELPE-KL-ECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPS   98 (308)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~   98 (308)
                      .+.+.++.++|. ...+.+++|++++|.+..+++ .+ .+++|++|++++|.++...|..+ .++++|++|++++|.+..
T Consensus        18 ~c~~~~l~~iP~-~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~-~~l~~L~~L~Ls~n~l~~   95 (606)
T 3t6q_A           18 NCENLGLNEIPG-TLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTF-QSQHRLDTLVLTANPLIF   95 (606)
T ss_dssp             ECTTSCCSSCCT-TSCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTT-TTCTTCCEEECTTCCCSE
T ss_pred             ECCCCCcccCcC-CCCCcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhc-cCccccCeeeCCCCcccc
Confidence            355677888884 457789999999999987754 44 99999999999999886555554 789999999999999986


Q ss_pred             CCCCCCCcccccccccccEEeecCCcCccc-chhhhCcCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCcccccc
Q 037941           99 LPSTLGDVATVGVLKKLVIFSFRNSHIEQL-PEEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEV  177 (308)
Q Consensus        99 lp~~~~~~~~l~~l~~L~~L~l~~~~i~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~  177 (308)
                      +++..     ++.+++|++|++++|.++.+ +..++.+++|++|++++|. +..++...+..+++|++|++++|.+.+..
T Consensus        96 ~~~~~-----~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~  169 (606)
T 3t6q_A           96 MAETA-----LSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNH-ISSIKLPKGFPTEKLKVLDFQNNAIHYLS  169 (606)
T ss_dssp             ECTTT-----TSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSC-CCCCCCCTTCCCTTCCEEECCSSCCCEEC
T ss_pred             cChhh-----hcccccccEeeccccCcccCCcchhccCCcccEEECCCCc-ccccCcccccCCcccCEEEcccCcccccC
Confidence            64432     88999999999999999876 5668889999999999988 55553222455889999999998877332


Q ss_pred             cCCcccchhhhhcCCCCC--EEEeeeccCcccc
Q 037941          178 EGQNNASLAELNQLSRLT--TLEMLILDAQVMP  208 (308)
Q Consensus       178 ~~~~~~~~~~l~~l~~L~--~L~l~~~~~~~~p  208 (308)
                             +..++.+++|+  .|++++|.+..++
T Consensus       170 -------~~~~~~l~~L~~l~L~l~~n~l~~~~  195 (606)
T 3t6q_A          170 -------KEDMSSLQQATNLSLNLNGNDIAGIE  195 (606)
T ss_dssp             -------HHHHHTTTTCCSEEEECTTCCCCEEC
T ss_pred             -------hhhhhhhcccceeEEecCCCccCccC
Confidence                   24556666666  5666666544433

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.90  E-value=3.8e-22  Score=187.63  Aligned_cols=148  Identities=18%  Similarity=0.199  Sum_probs=117.6

Q ss_pred             eeecccchhhHhhhhcCCCCeeEEeecCCCCCCCC-cC-CCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCC
Q 037941           20 NIQIISDLREVFEDLMQKDPIAISHPCRDIQELPE-KL-ECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFP   97 (308)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~   97 (308)
                      ..+.+.++.++|. ...+++++|++++|.+..+++ .+ .+++|++|++++|.+++..+.. |.++++|++|++++|.+.
T Consensus        16 ~~c~~~~l~~ip~-~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~-~~~l~~L~~L~Ls~n~l~   93 (606)
T 3vq2_A           16 YQCMDQKLSKVPD-DIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKA-WHGLHHLSNLILTGNPIQ   93 (606)
T ss_dssp             EECTTSCCSSCCT-TSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTT-TTTCTTCCEEECTTCCCC
T ss_pred             eEccCCCcccCCC-CCCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHH-hhchhhcCEeECCCCccc
Confidence            3456788888885 456899999999999977766 44 8999999999999888544444 478999999999999999


Q ss_pred             CC-CCCCCCcccccccccccEEeecCCcCcccc-hhhhCcCCCCEEecCCCCCCC-ccCcchhcCCCCCceEEccCCccc
Q 037941           98 SL-PSTLGDVATVGVLKKLVIFSFRNSHIEQLP-EEIGQLTRLKLLDLSTCSKLK-SIRPNVISNLPRLEELYMGNSFTH  174 (308)
Q Consensus        98 ~l-p~~~~~~~~l~~l~~L~~L~l~~~~i~~l~-~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~  174 (308)
                      .+ |..      ++.+++|++|++++|.++.++ ..++++++|++|++++|...+ .+|.. ++++++|++|++++|.+.
T Consensus        94 ~~~p~~------~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~-~~~l~~L~~L~Ls~n~l~  166 (606)
T 3vq2_A           94 SFSPGS------FSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAY-FSNLTNLVHVDLSYNYIQ  166 (606)
T ss_dssp             CCCTTS------STTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGG-GGTCTTCCEEECCSSCCC
T ss_pred             ccChhh------cCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHh-HhhcCCCCEEEccCCcce
Confidence            77 555      888889999999998888666 568888888888888887332 45665 788888888888888776


Q ss_pred             cc
Q 037941          175 WE  176 (308)
Q Consensus       175 ~~  176 (308)
                      +.
T Consensus       167 ~~  168 (606)
T 3vq2_A          167 TI  168 (606)
T ss_dssp             EE
T ss_pred             ec
Confidence            54

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.90  E-value=9.8e-23  Score=177.79  Aligned_cols=244  Identities=18%  Similarity=0.236  Sum_probs=196.5

Q ss_pred             CCeeEEeecCCCCCCCCcCCCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCCCCCCcccccccccccE
Q 037941           38 DPIAISHPCRDIQELPEKLECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKKLVI  117 (308)
Q Consensus        38 ~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~~~~l~~l~~L~~  117 (308)
                      .++.++++++.+..+|... .+++++|++++|.++. ++...+.++++|++|++++|.+..+++..     ++.+++|++
T Consensus        34 ~l~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~i~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-----~~~l~~L~~  106 (332)
T 2ft3_A           34 HLRVVQCSDLGLKAVPKEI-SPDTTLLDLQNNDISE-LRKDDFKGLQHLYALVLVNNKISKIHEKA-----FSPLRKLQK  106 (332)
T ss_dssp             ETTEEECCSSCCSSCCSCC-CTTCCEEECCSSCCCE-ECTTTTTTCTTCCEEECCSSCCCEECGGG-----STTCTTCCE
T ss_pred             cCCEEECCCCCccccCCCC-CCCCeEEECCCCcCCc-cCHhHhhCCCCCcEEECCCCccCccCHhH-----hhCcCCCCE
Confidence            5889999999999888766 4799999999999884 44434579999999999999999774432     899999999


Q ss_pred             EeecCCcCcccchhhhCcCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCcccccccCCcccchhhhhcCCCCCEE
Q 037941          118 FSFRNSHIEQLPEEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEVEGQNNASLAELNQLSRLTTL  197 (308)
Q Consensus       118 L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L  197 (308)
                      |++++|.++.+|..+.  ++|+.|++++|. ++.++...+..+++|+.|++++|.+....     ..+..+..+ +|+.|
T Consensus       107 L~L~~n~l~~l~~~~~--~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~l~~n~l~~~~-----~~~~~~~~l-~L~~L  177 (332)
T 2ft3_A          107 LYISKNHLVEIPPNLP--SSLVELRIHDNR-IRKVPKGVFSGLRNMNCIEMGGNPLENSG-----FEPGAFDGL-KLNYL  177 (332)
T ss_dssp             EECCSSCCCSCCSSCC--TTCCEEECCSSC-CCCCCSGGGSSCSSCCEEECCSCCCBGGG-----SCTTSSCSC-CCSCC
T ss_pred             EECCCCcCCccCcccc--ccCCEEECCCCc-cCccCHhHhCCCccCCEEECCCCccccCC-----CCcccccCC-ccCEE
Confidence            9999999999998665  899999999998 77888777899999999999999886211     123455666 99999


Q ss_pred             EeeeccCccccchhhccCCceeEeeccCccc----ccCCCCcCceEEEeecCchhhhhhHHHHhcccceeecCCccchhh
Q 037941          198 EMLILDAQVMPRELFSLGLERNKIFLGDVWS----WTGKYETSRTLKLKLDNRMYLEHGIKMLLRRTEDLHLDKLNGLQN  273 (308)
Q Consensus       198 ~l~~~~~~~~p~~~~~~~L~~l~i~~~~~~~----~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  273 (308)
                      ++++|.++.+|..+. .+|+.|++..+.+..    .+..+++|+.|+|+.|............+++|++|++++ +.++.
T Consensus       178 ~l~~n~l~~l~~~~~-~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~  255 (332)
T 2ft3_A          178 RISEAKLTGIPKDLP-ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDN-NKLSR  255 (332)
T ss_dssp             BCCSSBCSSCCSSSC-SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCS-SCCCB
T ss_pred             ECcCCCCCccCcccc-CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCC-CcCee
Confidence            999999999988765 789999987776433    466788999999999876665443333359999999998 56666


Q ss_pred             hhhccCCCCCCcccEEecccccccccccc
Q 037941          274 VLHELDGEGFPRLKHLLVQNASEILYIVS  302 (308)
Q Consensus       274 ~~~~~~~~~~~~L~~L~l~~c~~l~~i~~  302 (308)
                      ++..+  ..+++|+.|++++| ++..++.
T Consensus       256 lp~~l--~~l~~L~~L~l~~N-~l~~~~~  281 (332)
T 2ft3_A          256 VPAGL--PDLKLLQVVYLHTN-NITKVGV  281 (332)
T ss_dssp             CCTTG--GGCTTCCEEECCSS-CCCBCCT
T ss_pred             cChhh--hcCccCCEEECCCC-CCCccCh
Confidence            55433  56899999999998 6777764

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.90  E-value=3e-22  Score=174.48  Aligned_cols=244  Identities=18%  Similarity=0.231  Sum_probs=199.7

Q ss_pred             CCeeEEeecCCCCCCCCcCCCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCC-CCCCCCccccccccccc
Q 037941           38 DPIAISHPCRDIQELPEKLECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSL-PSTLGDVATVGVLKKLV  116 (308)
Q Consensus        38 ~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~~~~~~~l~~l~~L~  116 (308)
                      +++.++++++.+..+|... .+++++|++++|.++. ++...+.++++|++|++++|.+..+ |..      ++.+++|+
T Consensus        32 ~l~~l~~~~~~l~~lp~~~-~~~l~~L~L~~n~i~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~------~~~l~~L~  103 (330)
T 1xku_A           32 HLRVVQCSDLGLEKVPKDL-PPDTALLDLQNNKITE-IKDGDFKNLKNLHTLILINNKISKISPGA------FAPLVKLE  103 (330)
T ss_dssp             ETTEEECTTSCCCSCCCSC-CTTCCEEECCSSCCCC-BCTTTTTTCTTCCEEECCSSCCCCBCTTT------TTTCTTCC
T ss_pred             CCeEEEecCCCccccCccC-CCCCeEEECCCCcCCE-eChhhhccCCCCCEEECCCCcCCeeCHHH------hcCCCCCC
Confidence            6888999999998888655 3789999999999884 4544458999999999999999987 555      89999999


Q ss_pred             EEeecCCcCcccchhhhCcCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCcccccccCCcccchhhhhcCCCCCE
Q 037941          117 IFSFRNSHIEQLPEEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEVEGQNNASLAELNQLSRLTT  196 (308)
Q Consensus       117 ~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~  196 (308)
                      +|++++|.++.+|..+.  ++|+.|++++|. ++.++...+..+++|+.|++++|.+....     ..+..+..+++|+.
T Consensus       104 ~L~Ls~n~l~~l~~~~~--~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-----~~~~~~~~l~~L~~  175 (330)
T 1xku_A          104 RLYLSKNQLKELPEKMP--KTLQELRVHENE-ITKVRKSVFNGLNQMIVVELGTNPLKSSG-----IENGAFQGMKKLSY  175 (330)
T ss_dssp             EEECCSSCCSBCCSSCC--TTCCEEECCSSC-CCBBCHHHHTTCTTCCEEECCSSCCCGGG-----BCTTGGGGCTTCCE
T ss_pred             EEECCCCcCCccChhhc--ccccEEECCCCc-ccccCHhHhcCCccccEEECCCCcCCccC-----cChhhccCCCCcCE
Confidence            99999999999987654  799999999998 77888777899999999999999886211     22467889999999


Q ss_pred             EEeeeccCccccchhhccCCceeEeeccCcc----cccCCCCcCceEEEeecCchhhhhhHHHHhcccceeecCCccchh
Q 037941          197 LEMLILDAQVMPRELFSLGLERNKIFLGDVW----SWTGKYETSRTLKLKLDNRMYLEHGIKMLLRRTEDLHLDKLNGLQ  272 (308)
Q Consensus       197 L~l~~~~~~~~p~~~~~~~L~~l~i~~~~~~----~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  272 (308)
                      |++++|.++.+|.... ++|+.|++..+.+.    ..+..+++|+.|+|+.|............+++|++|++++ +.++
T Consensus       176 L~l~~n~l~~l~~~~~-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~-N~l~  253 (330)
T 1xku_A          176 IRIADTNITTIPQGLP-PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNN-NKLV  253 (330)
T ss_dssp             EECCSSCCCSCCSSCC-TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCS-SCCS
T ss_pred             EECCCCccccCCcccc-ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCC-CcCc
Confidence            9999999999988766 89999999877643    3467889999999999876655443223359999999998 5666


Q ss_pred             hhhhccCCCCCCcccEEecccccccccccc
Q 037941          273 NVLHELDGEGFPRLKHLLVQNASEILYIVS  302 (308)
Q Consensus       273 ~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~  302 (308)
                      .++..+  ..+++|++|++++| .++.++.
T Consensus       254 ~lp~~l--~~l~~L~~L~l~~N-~i~~~~~  280 (330)
T 1xku_A          254 KVPGGL--ADHKYIQVVYLHNN-NISAIGS  280 (330)
T ss_dssp             SCCTTT--TTCSSCCEEECCSS-CCCCCCT
T ss_pred             cCChhh--ccCCCcCEEECCCC-cCCccCh
Confidence            554433  67899999999998 6877764

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.89  E-value=5e-23  Score=191.40  Aligned_cols=178  Identities=19%  Similarity=0.212  Sum_probs=137.5

Q ss_pred             cccchhhHhhhhcCCCCeeEEeecCCCCCCCC-cC-CCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCC
Q 037941           23 IISDLREVFEDLMQKDPIAISHPCRDIQELPE-KL-ECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLP  100 (308)
Q Consensus        23 ~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp  100 (308)
                      .+.++.++|. ...+++++|++++|.+..+++ .+ .+++|++|++++|.+++..+.. +.++++|++|++++|.+..+|
T Consensus        13 ~~~~l~~ip~-~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~-~~~l~~L~~L~Ls~n~l~~~~   90 (549)
T 2z81_A           13 RSRSFTSIPS-GLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDA-FYSLGSLEHLDLSDNHLSSLS   90 (549)
T ss_dssp             TTSCCSSCCS-CCCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTT-TTTCTTCCEEECTTSCCCSCC
T ss_pred             CCCccccccc-cCCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhh-ccccccCCEEECCCCccCccC
Confidence            3567778885 446899999999999977644 44 9999999999999988544444 478999999999999999887


Q ss_pred             CCCCCcccccccccccEEeecCCcCcc--cchhhhCcCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCccccccc
Q 037941          101 STLGDVATVGVLKKLVIFSFRNSHIEQ--LPEEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEVE  178 (308)
Q Consensus       101 ~~~~~~~~l~~l~~L~~L~l~~~~i~~--l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~  178 (308)
                      +..     ++.+++|++|++++|.++.  .|..++.+++|+.|++++|..++.+|...+..+++|++|++++|.+.+..+
T Consensus        91 ~~~-----~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  165 (549)
T 2z81_A           91 SSW-----FGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQS  165 (549)
T ss_dssp             HHH-----HTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECT
T ss_pred             HHH-----hccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccCh
Confidence            754     8899999999999999884  467789999999999999986777876558899999999999998875433


Q ss_pred             CCcc----------------cchh-hhhcCCCCCEEEeeeccCccc
Q 037941          179 GQNN----------------ASLA-ELNQLSRLTTLEMLILDAQVM  207 (308)
Q Consensus       179 ~~~~----------------~~~~-~l~~l~~L~~L~l~~~~~~~~  207 (308)
                      ....                ..+. .+..+++|+.|++++|.+..+
T Consensus       166 ~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~  211 (549)
T 2z81_A          166 QSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARF  211 (549)
T ss_dssp             TTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTC
T ss_pred             hhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccc
Confidence            2110                0111 123567788888887776553

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.89  E-value=6.9e-22  Score=180.27  Aligned_cols=257  Identities=14%  Similarity=0.153  Sum_probs=141.0

Q ss_pred             cchhhHhhhhcCCCCeeEEeecCCCCCCCCcCCCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCCCCC
Q 037941           25 SDLREVFEDLMQKDPIAISHPCRDIQELPEKLECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLG  104 (308)
Q Consensus        25 ~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~  104 (308)
                      .++..+|.....+++++|++++|.+..+++...+++|++|++++|.+++. +.  +..+++|++|++++|.+..+|+   
T Consensus        56 ~~i~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n~l~~~-~~--~~~l~~L~~L~L~~n~l~~~~~---  129 (466)
T 1o6v_A           56 LGIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADI-TP--LANLTNLTGLTLFNNQITDIDP---  129 (466)
T ss_dssp             SCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCC-GG--GTTCTTCCEEECCSSCCCCCGG---
T ss_pred             CCCccCcchhhhcCCCEEECCCCccCCchhhhccccCCEEECCCCccccC-hh--hcCCCCCCEEECCCCCCCCChH---
Confidence            44445554456778888888888887777644888888888888887643 33  4678888888888888877765   


Q ss_pred             CcccccccccccEEeecCCcCcccch--------------------hhhCcCCCCEEecCCCCCCCccCcchhcCCCCCc
Q 037941          105 DVATVGVLKKLVIFSFRNSHIEQLPE--------------------EIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLE  164 (308)
Q Consensus       105 ~~~~l~~l~~L~~L~l~~~~i~~l~~--------------------~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~  164 (308)
                          +..+++|++|++++|.+..++.                    .+..+++|+.|++++|. ++.++.  +..+++|+
T Consensus       130 ----~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~--l~~l~~L~  202 (466)
T 1o6v_A          130 ----LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNK-VSDISV--LAKLTNLE  202 (466)
T ss_dssp             ----GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSC-CCCCGG--GGGCTTCS
T ss_pred             ----HcCCCCCCEEECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCc-CCCChh--hccCCCCC
Confidence                5666677777776666554432                    13344555555555554 344332  44555555


Q ss_pred             eEEccCCcccccccC-------------CcccchhhhhcCCCCCEEEeeeccCccccchhhccCCceeEeeccCcccc--
Q 037941          165 ELYMGNSFTHWEVEG-------------QNNASLAELNQLSRLTTLEMLILDAQVMPRELFSLGLERNKIFLGDVWSW--  229 (308)
Q Consensus       165 ~L~l~~~~~~~~~~~-------------~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~~~~~~L~~l~i~~~~~~~~--  229 (308)
                      .|++++|.+.+..+-             ........+..+++|+.|++++|.+..++.....++|+.|++..+.+...  
T Consensus       203 ~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~  282 (466)
T 1o6v_A          203 SLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISP  282 (466)
T ss_dssp             EEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGG
T ss_pred             EEEecCCcccccccccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccccchhhhcCCCCCEEECCCCccCcccc
Confidence            555555554422110             00000123344444555555555444444322224555555544432221  


Q ss_pred             cCCCCcCceEEEeecCchhhhhhHHHHhcccceeecCCccchhhhhhccCCCCCCcccEEeccccccccccc
Q 037941          230 TGKYETSRTLKLKLDNRMYLEHGIKMLLRRTEDLHLDKLNGLQNVLHELDGEGFPRLKHLLVQNASEILYIV  301 (308)
Q Consensus       230 ~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~  301 (308)
                      ...+++|+.|+++.|....... +.. +++|+.|+++++ .++.+.+   .+.+++|+.|++.+| ++..++
T Consensus       283 ~~~l~~L~~L~L~~n~l~~~~~-~~~-l~~L~~L~L~~n-~l~~~~~---~~~l~~L~~L~l~~n-~l~~~~  347 (466)
T 1o6v_A          283 LAGLTALTNLELNENQLEDISP-ISN-LKNLTYLTLYFN-NISDISP---VSSLTKLQRLFFYNN-KVSDVS  347 (466)
T ss_dssp             GTTCTTCSEEECCSSCCSCCGG-GGG-CTTCSEEECCSS-CCSCCGG---GGGCTTCCEEECCSS-CCCCCG
T ss_pred             ccCCCccCeEEcCCCcccCchh-hcC-CCCCCEEECcCC-cCCCchh---hccCccCCEeECCCC-ccCCch
Confidence            3445556666665554433221 222 366666666663 3333322   245667777777766 455443

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.89  E-value=3.4e-22  Score=187.94  Aligned_cols=244  Identities=17%  Similarity=0.142  Sum_probs=145.1

Q ss_pred             cCCCCeeEEeecCCCCCCCCcC-CCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCC-CCCCCCCCccccccc
Q 037941           35 MQKDPIAISHPCRDIQELPEKL-ECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFP-SLPSTLGDVATVGVL  112 (308)
Q Consensus        35 ~~~~l~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~lp~~~~~~~~l~~l  112 (308)
                      ..+++++|++++|.+..+|..+ .+++|++|++++|.++...+.. +..+++|++|++++|.+. .+|...     +..+
T Consensus       276 ~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~-----~~~l  349 (606)
T 3t6q_A          276 CFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQIS-ASNFPSLTHLSIKGNTKRLELGTGC-----LENL  349 (606)
T ss_dssp             TCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGC-GGGCTTCSEEECCSCSSCCBCCSST-----TTTC
T ss_pred             cccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhh-hhccCcCCEEECCCCCcccccchhh-----hhcc
Confidence            4567788888888777777766 7788888888887776443333 357777777777777766 565543     6677


Q ss_pred             ccccEEeecCCcCccc---chhhhCcCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCcccccccCCcccchhhhh
Q 037941          113 KKLVIFSFRNSHIEQL---PEEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEVEGQNNASLAELN  189 (308)
Q Consensus       113 ~~L~~L~l~~~~i~~l---~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~  189 (308)
                      ++|++|++++|.++.+   +..+..+++|+.|++++|. +...+...+..+++|+.|++++|.+.+..+      ...+.
T Consensus       350 ~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~------~~~~~  422 (606)
T 3t6q_A          350 ENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNE-PLSLKTEAFKECPQLELLDLAFTRLKVKDA------QSPFQ  422 (606)
T ss_dssp             TTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCS-CEEECTTTTTTCTTCSEEECTTCCEECCTT------CCTTT
T ss_pred             CcCCEEECCCCccccccCcchhcccCCCCCEEECCCCc-CCcCCHHHhcCCccCCeEECCCCcCCCccc------chhhh
Confidence            7777777777777644   4557777777777777776 444433336677777777777776652211      12355


Q ss_pred             cCCCCCEEEeeeccCccccchh-hc-cCCceeEeeccCcc-------cccCCCCcCceEEEeecCchhhhhhHHHHhccc
Q 037941          190 QLSRLTTLEMLILDAQVMPREL-FS-LGLERNKIFLGDVW-------SWTGKYETSRTLKLKLDNRMYLEHGIKMLLRRT  260 (308)
Q Consensus       190 ~l~~L~~L~l~~~~~~~~p~~~-~~-~~L~~l~i~~~~~~-------~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L  260 (308)
                      .+++|+.|++++|.+...+... .. ++|+.|++..+.+.       .....+++|+.|+++.|...........-+++|
T Consensus       423 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  502 (606)
T 3t6q_A          423 NLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMM  502 (606)
T ss_dssp             TCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred             CcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCC
Confidence            6666666666666655443332 22 56666666554432       124455666666666655444322221223666


Q ss_pred             ceeecCCccchhhhhhccCCCCCCcccEEecccc
Q 037941          261 EDLHLDKLNGLQNVLHELDGEGFPRLKHLLVQNA  294 (308)
Q Consensus       261 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c  294 (308)
                      ++|++++ +.++...+.. ...++.| .|++++|
T Consensus       503 ~~L~Ls~-N~l~~~~~~~-l~~l~~L-~L~L~~N  533 (606)
T 3t6q_A          503 NHVDLSH-NRLTSSSIEA-LSHLKGI-YLNLASN  533 (606)
T ss_dssp             CEEECCS-SCCCGGGGGG-GTTCCSC-EEECCSS
T ss_pred             CEEECCC-CccCcCChhH-hCccccc-EEECcCC
Confidence            6666665 3333332211 1344455 5555555

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.89  E-value=4.5e-22  Score=185.64  Aligned_cols=146  Identities=19%  Similarity=0.235  Sum_probs=102.3

Q ss_pred             eecccchhhHhhhhcCCCCeeEEeecCCCCCCCCc-C-CCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCC
Q 037941           21 IQIISDLREVFEDLMQKDPIAISHPCRDIQELPEK-L-ECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPS   98 (308)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~   98 (308)
                      .|.+.++.++|. ...+++++|++++|.+..+++. + .+++|++|++++|.+++ ++...|.++++|++|++++|.+..
T Consensus        13 ~c~~~~l~~ip~-~l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~-i~~~~~~~l~~L~~L~L~~n~l~~   90 (570)
T 2z63_A           13 QCMELNFYKIPD-NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT-IEDGAYQSLSHLSTLILTGNPIQS   90 (570)
T ss_dssp             ECCSSCCSSCCS-SSCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCE-ECTTTTTTCTTCCEEECTTCCCCE
T ss_pred             EeCCCCccccCC-CccccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCc-cCcccccCchhCCEEeCcCCcCCc
Confidence            445677777884 4467888888888888776543 3 88888888888888774 444445778888888888888887


Q ss_pred             CCCCCCCcccccccccccEEeecCCcCcccch-hhhCcCCCCEEecCCCCCCCc--cCcchhcCCCCCceEEccCCcccc
Q 037941           99 LPSTLGDVATVGVLKKLVIFSFRNSHIEQLPE-EIGQLTRLKLLDLSTCSKLKS--IRPNVISNLPRLEELYMGNSFTHW  175 (308)
Q Consensus        99 lp~~~~~~~~l~~l~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~l~~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~  175 (308)
                      +|+..     ++.+++|++|++++|.++.++. .++.+++|++|++++|. +..  +|.. ++++++|++|++++|.+.+
T Consensus        91 ~~~~~-----~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~lp~~-~~~l~~L~~L~l~~n~l~~  163 (570)
T 2z63_A           91 LALGA-----FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEY-FSNLTNLEHLDLSSNKIQS  163 (570)
T ss_dssp             ECTTT-----TTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSC-CCCCCCCGG-GGGCTTCCEEECTTSCCCE
T ss_pred             cCHhh-----hcCccccccccccccccccCCCccccccccccEEecCCCc-cceecChhh-hcccCCCCEEeCcCCccce
Confidence            66433     6777777777777777776654 46677777777777776 333  4554 6667777777777665543

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.89  E-value=2.8e-22  Score=193.94  Aligned_cols=254  Identities=14%  Similarity=0.130  Sum_probs=127.9

Q ss_pred             cCCCCeeEEeecCC-CC--CCCCcC--------CCCCccEEEecCCCCcCCCCc-hhhcCCCCccEEEccCCCCCCCCCC
Q 037941           35 MQKDPIAISHPCRD-IQ--ELPEKL--------ECPKLKLFFLFSEKLSLVIPD-LFFEGVPSLQVLSLNGFHFPSLPST  102 (308)
Q Consensus        35 ~~~~l~~L~l~~~~-~~--~~~~~~--------~~~~L~~L~l~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~lp~~  102 (308)
                      ..++|++|++++|. +.  .+|..+        .+++|+.|++++|.++ .+|. ..+.++++|++|++++|.+..+| .
T Consensus       513 ~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~  590 (876)
T 4ecn_A          513 DLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVRHLE-A  590 (876)
T ss_dssp             GCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCCBCC-C
T ss_pred             CCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcccch-h
Confidence            35555666666554 43  233322        2335566666555555 4554 12245555666666555555555 3


Q ss_pred             CCCcccccccccccEEeecCCcCcccchhhhCcCC-CCEEecCCCCCCCccCcchhcCCCC--CceEEccCCcccccccC
Q 037941          103 LGDVATVGVLKKLVIFSFRNSHIEQLPEEIGQLTR-LKLLDLSTCSKLKSIRPNVISNLPR--LEELYMGNSFTHWEVEG  179 (308)
Q Consensus       103 ~~~~~~l~~l~~L~~L~l~~~~i~~l~~~~~~l~~-L~~L~l~~~~~~~~~~~~~~~~l~~--L~~L~l~~~~~~~~~~~  179 (308)
                            ++.+++|++|++++|.++.+|..+..+++ |+.|++++|. ++.+|.. +..+..  |+.|++++|.+.+..+.
T Consensus       591 ------~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~-L~~lp~~-~~~~~~~~L~~L~Ls~N~l~g~ip~  662 (876)
T 4ecn_A          591 ------FGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNK-LKYIPNI-FNAKSVYVMGSVDFSYNKIGSEGRN  662 (876)
T ss_dssp             ------CCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSC-CCSCCSC-CCTTCSSCEEEEECCSSCTTTTSSS
T ss_pred             ------hcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCC-CCcCchh-hhccccCCCCEEECcCCcCCCcccc
Confidence                  55555555555555555555555555555 5555555555 4445533 333322  55555555544422110


Q ss_pred             ---------------------Ccccchhh-hhcCCCCCEEEeeeccCccccchhhc-c--------CCceeEeeccCcc-
Q 037941          180 ---------------------QNNASLAE-LNQLSRLTTLEMLILDAQVMPRELFS-L--------GLERNKIFLGDVW-  227 (308)
Q Consensus       180 ---------------------~~~~~~~~-l~~l~~L~~L~l~~~~~~~~p~~~~~-~--------~L~~l~i~~~~~~-  227 (308)
                                           .....+.. +..+++|+.|++++|.++.+|...+. .        +|+.|++..+.+. 
T Consensus       663 l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~  742 (876)
T 4ecn_A          663 ISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS  742 (876)
T ss_dssp             CSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCC
T ss_pred             chhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCcc
Confidence                                 00012222 23566666666666666666665543 1        5666666554432 


Q ss_pred             --cccC--CCCcCceEEEeecCchhhhhhHHHHhcccceeecCCcc-----c-hhhhhhccCCCCCCcccEEeccccccc
Q 037941          228 --SWTG--KYETSRTLKLKLDNRMYLEHGIKMLLRRTEDLHLDKLN-----G-LQNVLHELDGEGFPRLKHLLVQNASEI  297 (308)
Q Consensus       228 --~~~~--~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~-----~-~~~~~~~~~~~~~~~L~~L~l~~c~~l  297 (308)
                        ....  .+++|+.|+|+.|.....+..+..+ ++|+.|++++++     . ...++..+  ..+++|+.|++++| ++
T Consensus       743 lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~~L-~~L~~L~Ls~N~~ls~N~l~~~ip~~l--~~L~~L~~L~Ls~N-~L  818 (876)
T 4ecn_A          743 LSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNS-SQLKAFGIRHQRDAEGNRILRQWPTGI--TTCPSLIQLQIGSN-DI  818 (876)
T ss_dssp             CCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGC-TTCCEEECCCCBCTTCCBCCCCCCTTG--GGCSSCCEEECCSS-CC
T ss_pred             chHHhhhccCCCcCEEEeCCCCCCccchhhhcC-CCCCEEECCCCCCcccccccccChHHH--hcCCCCCEEECCCC-CC
Confidence              2232  5566666776666554444444433 666666665421     1 12211111  34566666666666 44


Q ss_pred             ccccc
Q 037941          298 LYIVS  302 (308)
Q Consensus       298 ~~i~~  302 (308)
                      ..||.
T Consensus       819 ~~Ip~  823 (876)
T 4ecn_A          819 RKVDE  823 (876)
T ss_dssp             CBCCS
T ss_pred             CccCH
Confidence            55554

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.89  E-value=1e-22  Score=175.64  Aligned_cols=232  Identities=19%  Similarity=0.161  Sum_probs=161.5

Q ss_pred             eecccchhhHhhhhcCCCCeeEEeecCCCCCCCCcC--CCCCccEEEecCCCCcCC--CCchhhcCCCCccEEEccCCCC
Q 037941           21 IQIISDLREVFEDLMQKDPIAISHPCRDIQELPEKL--ECPKLKLFFLFSEKLSLV--IPDLFFEGVPSLQVLSLNGFHF   96 (308)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~   96 (308)
                      .+.+.++..+|. ...+++++|++++|.+..+|...  .+++|++|++++|.++..  .+..+ ..+++|++|++++|.+
T Consensus        13 ~c~~~~l~~ip~-~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-~~~~~L~~L~Ls~n~i   90 (306)
T 2z66_A           13 RCNSKGLTSVPT-GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSD-FGTTSLKYLDLSFNGV   90 (306)
T ss_dssp             ECCSSCCSSCCS-CCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHH-HSCSCCCEEECCSCSE
T ss_pred             EcCCCCcccCCC-CCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCccccc-ccccccCEEECCCCcc
Confidence            344667777774 44678999999999998888754  889999999999887632  24444 4789999999999998


Q ss_pred             CCCCCCCCCcccccccccccEEeecCCcCcccch--hhhCcCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCccc
Q 037941           97 PSLPSTLGDVATVGVLKKLVIFSFRNSHIEQLPE--EIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTH  174 (308)
Q Consensus        97 ~~lp~~~~~~~~l~~l~~L~~L~l~~~~i~~l~~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~  174 (308)
                      ..+|..      +..+++|++|++++|.++.++.  .+..+++|+.|++++|. +...+...+..+++|++|++++|.+.
T Consensus        91 ~~l~~~------~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~  163 (306)
T 2z66_A           91 ITMSSN------FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH-TRVAFNGIFNGLSSLEVLKMAGNSFQ  163 (306)
T ss_dssp             EEEEEE------EETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSC-CEECSTTTTTTCTTCCEEECTTCEEG
T ss_pred             ccChhh------cCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCc-CCccchhhcccCcCCCEEECCCCccc
Confidence            888887      7889999999999998887764  68888999999999988 55444444788899999999998877


Q ss_pred             ccccCCcccchhhhhcCCCCCEEEeeeccCccccc-hhhc-cCCceeEeeccCccc----ccCCCCcCceEEEeecCchh
Q 037941          175 WEVEGQNNASLAELNQLSRLTTLEMLILDAQVMPR-ELFS-LGLERNKIFLGDVWS----WTGKYETSRTLKLKLDNRMY  248 (308)
Q Consensus       175 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~-~~~~-~~L~~l~i~~~~~~~----~~~~~~~L~~L~L~~~~~~~  248 (308)
                      +.      ..+..+..+++|+.|++++|.++.++. .+.. ++|+.|++..+.+..    ....+++|+.|+|+.|....
T Consensus       164 ~~------~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~  237 (306)
T 2z66_A          164 EN------FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMT  237 (306)
T ss_dssp             GG------EECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCB
T ss_pred             cc------cchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcc
Confidence            31      123567788899999999988776643 3222 566666665554322    23344555555555554333


Q ss_pred             hhh-hHHHHhcccceeecCC
Q 037941          249 LEH-GIKMLLRRTEDLHLDK  267 (308)
Q Consensus       249 ~~~-~~~~~~~~L~~L~l~~  267 (308)
                      ... .+..+.++|++|++++
T Consensus       238 ~~~~~~~~~~~~L~~L~L~~  257 (306)
T 2z66_A          238 SKKQELQHFPSSLAFLNLTQ  257 (306)
T ss_dssp             CSSSSCCCCCTTCCEEECTT
T ss_pred             cCHHHHHhhhccCCEEEccC
Confidence            211 1222213555555555

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.88  E-value=7.4e-22  Score=192.36  Aligned_cols=149  Identities=17%  Similarity=0.172  Sum_probs=121.6

Q ss_pred             eeecccchhhHhhhhcCCCCeeEEeecCCCCCCC-CcC-CCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCC
Q 037941           20 NIQIISDLREVFEDLMQKDPIAISHPCRDIQELP-EKL-ECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFP   97 (308)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~-~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~   97 (308)
                      ..+.+.++..+|.  .++++++|++++|.+..++ ..+ .+++|++|++++|...+.++...|+++++|++|++++|.+.
T Consensus         9 ~dcs~~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~   86 (844)
T 3j0a_A            9 AFYRFCNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIY   86 (844)
T ss_dssp             EEESCCCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCC
T ss_pred             EEccCCCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCc
Confidence            3556788899996  6899999999999997764 444 99999999999997776776655689999999999999999


Q ss_pred             CC-CCCCCCcccccccccccEEeecCCcCcc-cchh--hhCcCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCcc
Q 037941           98 SL-PSTLGDVATVGVLKKLVIFSFRNSHIEQ-LPEE--IGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFT  173 (308)
Q Consensus        98 ~l-p~~~~~~~~l~~l~~L~~L~l~~~~i~~-l~~~--~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~  173 (308)
                      .+ |..      ++.+++|++|++++|.++. +|..  ++.+++|+.|++++|...+..+...++++++|++|++++|.+
T Consensus        87 ~~~p~~------~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i  160 (844)
T 3j0a_A           87 FLHPDA------FQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQI  160 (844)
T ss_dssp             EECTTS------SCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCC
T ss_pred             ccCHhH------ccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcC
Confidence            76 555      8899999999999999883 5554  888999999999999843333333488999999999999887


Q ss_pred             ccc
Q 037941          174 HWE  176 (308)
Q Consensus       174 ~~~  176 (308)
                      .+.
T Consensus       161 ~~~  163 (844)
T 3j0a_A          161 FLV  163 (844)
T ss_dssp             CCC
T ss_pred             Cee
Confidence            643

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.88  E-value=6.4e-22  Score=188.55  Aligned_cols=173  Identities=20%  Similarity=0.219  Sum_probs=136.1

Q ss_pred             eecccchhhHhhhhcCCCCeeEEeecCCCCCCCCc-C-CCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCC
Q 037941           21 IQIISDLREVFEDLMQKDPIAISHPCRDIQELPEK-L-ECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPS   98 (308)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~   98 (308)
                      -+.+.++.++|. ...+++++|++++|.+..+++. + .+++|++|++++|.+++..+.. +.++++|++|++++|.+..
T Consensus        10 ~cs~~~L~~ip~-~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~   87 (680)
T 1ziw_A           10 DCSHLKLTQVPD-DLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPEL-CQKLPMLKVLNLQHNELSQ   87 (680)
T ss_dssp             ECCSSCCSSCCS-CSCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTH-HHHCTTCCEEECCSSCCCC
T ss_pred             ECCCCCcccccc-ccCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHH-HhcccCcCEEECCCCccCc
Confidence            455677888884 3468999999999999888764 4 8999999999999988655554 4789999999999999999


Q ss_pred             CCCCCCCcccccccccccEEeecCCcCcccc-hhhhCcCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCcccccc
Q 037941           99 LPSTLGDVATVGVLKKLVIFSFRNSHIEQLP-EEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEV  177 (308)
Q Consensus        99 lp~~~~~~~~l~~l~~L~~L~l~~~~i~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~  177 (308)
                      +|+..     ++.+++|++|++++|.++.++ ..++++++|++|++++|. +...+...++.+++|++|++++|.+.+..
T Consensus        88 l~~~~-----~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~  161 (680)
T 1ziw_A           88 LSDKT-----FAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNG-LSSTKLGTQVQLENLQELLLSNNKIQALK  161 (680)
T ss_dssp             CCTTT-----TTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSC-CSCCCCCSSSCCTTCCEEECCSSCCCCBC
T ss_pred             cChhh-----hccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCc-ccccCchhhcccccCCEEEccCCcccccC
Confidence            98854     889999999999999999776 568999999999999998 55554444788999999999999877432


Q ss_pred             cCCcccchhhh--hcCCCCCEEEeeeccCcccc
Q 037941          178 EGQNNASLAEL--NQLSRLTTLEMLILDAQVMP  208 (308)
Q Consensus       178 ~~~~~~~~~~l--~~l~~L~~L~l~~~~~~~~p  208 (308)
                      +       ..+  ..+++|+.|++++|.++.++
T Consensus       162 ~-------~~~~~~~~~~L~~L~L~~n~l~~~~  187 (680)
T 1ziw_A          162 S-------EELDIFANSSLKKLELSSNQIKEFS  187 (680)
T ss_dssp             H-------HHHGGGTTCEESEEECTTCCCCCBC
T ss_pred             H-------HHhhccccccccEEECCCCcccccC
Confidence            2       222  23456666666666554443

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.88  E-value=2.4e-22  Score=173.87  Aligned_cols=226  Identities=16%  Similarity=0.201  Sum_probs=184.6

Q ss_pred             CCccEEEecCCCCcC--CCCchhhcCCCCccEEEccC-CCCC-CCCCCCCCcccccccccccEEeecCCcCc-ccchhhh
Q 037941           59 PKLKLFFLFSEKLSL--VIPDLFFEGVPSLQVLSLNG-FHFP-SLPSTLGDVATVGVLKKLVIFSFRNSHIE-QLPEEIG  133 (308)
Q Consensus        59 ~~L~~L~l~~~~~~~--~~~~~~~~~l~~L~~L~l~~-~~~~-~lp~~~~~~~~l~~l~~L~~L~l~~~~i~-~l~~~~~  133 (308)
                      .+++.|++++|.+++  .+|..+ .++++|++|++++ |.+. .+|..      ++.+++|++|++++|.++ .+|..+.
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l-~~l~~L~~L~L~~~n~l~~~~p~~------l~~l~~L~~L~Ls~n~l~~~~p~~~~  122 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSL-ANLPYLNFLYIGGINNLVGPIPPA------IAKLTQLHYLYITHTNVSGAIPDFLS  122 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGG-GGCTTCSEEEEEEETTEESCCCGG------GGGCTTCSEEEEEEECCEEECCGGGG
T ss_pred             ceEEEEECCCCCccCCcccChhH-hCCCCCCeeeCCCCCcccccCChh------HhcCCCCCEEECcCCeeCCcCCHHHh
Confidence            689999999999987  788766 6899999999994 8887 67887      899999999999999998 8899999


Q ss_pred             CcCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCcccccccCCcccchhhhhcCC-CCCEEEeeeccCc-cccchh
Q 037941          134 QLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEVEGQNNASLAELNQLS-RLTTLEMLILDAQ-VMPREL  211 (308)
Q Consensus       134 ~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~~-~~p~~~  211 (308)
                      .+++|++|++++|.....+|.. +..+++|++|++++|.+.+.       .+..+..++ .|+.|++++|.+. .+|..+
T Consensus       123 ~l~~L~~L~Ls~N~l~~~~p~~-~~~l~~L~~L~L~~N~l~~~-------~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~  194 (313)
T 1ogq_A          123 QIKTLVTLDFSYNALSGTLPPS-ISSLPNLVGITFDGNRISGA-------IPDSYGSFSKLFTSMTISRNRLTGKIPPTF  194 (313)
T ss_dssp             GCTTCCEEECCSSEEESCCCGG-GGGCTTCCEEECCSSCCEEE-------CCGGGGCCCTTCCEEECCSSEEEEECCGGG
T ss_pred             CCCCCCEEeCCCCccCCcCChH-HhcCCCCCeEECcCCcccCc-------CCHHHhhhhhcCcEEECcCCeeeccCChHH
Confidence            9999999999999844477776 89999999999999998733       336778887 9999999999976 677777


Q ss_pred             hccCCceeEeeccCc----ccccCCCCcCceEEEeecCchhhhhhHHHHhcccceeecCCccchh-hhhhccCCCCCCcc
Q 037941          212 FSLGLERNKIFLGDV----WSWTGKYETSRTLKLKLDNRMYLEHGIKMLLRRTEDLHLDKLNGLQ-NVLHELDGEGFPRL  286 (308)
Q Consensus       212 ~~~~L~~l~i~~~~~----~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~~~L  286 (308)
                      ....|+.|++..+.+    +..+..+++|+.|+|+.|........+.. +++|++|+++++ .++ .++..+  ..+++|
T Consensus       195 ~~l~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~-l~~L~~L~Ls~N-~l~~~~p~~l--~~l~~L  270 (313)
T 1ogq_A          195 ANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGL-SKNLNGLDLRNN-RIYGTLPQGL--TQLKFL  270 (313)
T ss_dssp             GGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCC-CTTCCEEECCSS-CCEECCCGGG--GGCTTC
T ss_pred             hCCcccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCcccc-cCCCCEEECcCC-cccCcCChHH--hcCcCC
Confidence            776699999876653    44577899999999999876544444333 499999999984 444 333323  568999


Q ss_pred             cEEeccccccccccccC
Q 037941          287 KHLLVQNASEILYIVSS  303 (308)
Q Consensus       287 ~~L~l~~c~~l~~i~~~  303 (308)
                      +.|++++|.--..+|..
T Consensus       271 ~~L~Ls~N~l~~~ip~~  287 (313)
T 1ogq_A          271 HSLNVSFNNLCGEIPQG  287 (313)
T ss_dssp             CEEECCSSEEEEECCCS
T ss_pred             CEEECcCCcccccCCCC
Confidence            99999999544477764

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.88  E-value=1.9e-22  Score=194.71  Aligned_cols=249  Identities=20%  Similarity=0.165  Sum_probs=158.4

Q ss_pred             CCCeeEEeecCCCC-CCCCcC-CCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCC-CCCCCCCCcccccccc
Q 037941           37 KDPIAISHPCRDIQ-ELPEKL-ECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFP-SLPSTLGDVATVGVLK  113 (308)
Q Consensus        37 ~~l~~L~l~~~~~~-~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~lp~~~~~~~~l~~l~  113 (308)
                      +++++|++++|.+. .+|..+ .+++|++|++++|.+++.+|...+.++++|++|++++|.+. .+|..      +..++
T Consensus       294 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~------l~~l~  367 (768)
T 3rgz_A          294 DTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPES------LTNLS  367 (768)
T ss_dssp             TTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTT------HHHHT
T ss_pred             CcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHH------HHhhh
Confidence            44555555555442 333333 55555555555555554455443455555555555555555 45555      55554


Q ss_pred             -cccEEeecCCcCc-ccchhhhC--cCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCcccccccCCcccchhhhh
Q 037941          114 -KLVIFSFRNSHIE-QLPEEIGQ--LTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEVEGQNNASLAELN  189 (308)
Q Consensus       114 -~L~~L~l~~~~i~-~l~~~~~~--l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~  189 (308)
                       +|++|++++|.++ .+|..+..  +++|+.|++++|.....+|.. +..+++|+.|++++|.+.+.       .+..+.
T Consensus       368 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~Ls~N~l~~~-------~p~~l~  439 (768)
T 3rgz_A          368 ASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPT-LSNCSELVSLHLSFNYLSGT-------IPSSLG  439 (768)
T ss_dssp             TTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGG-GGGCTTCCEEECCSSEEESC-------CCGGGG
T ss_pred             cCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHH-HhcCCCCCEEECcCCcccCc-------ccHHHh
Confidence             5666666666555 44544444  566777777777633355555 67778888888888877632       235677


Q ss_pred             cCCCCCEEEeeeccCc-cccchhhc-cCCceeEeeccCc----ccccCCCCcCceEEEeecCchhh-hhhHHHHhcccce
Q 037941          190 QLSRLTTLEMLILDAQ-VMPRELFS-LGLERNKIFLGDV----WSWTGKYETSRTLKLKLDNRMYL-EHGIKMLLRRTED  262 (308)
Q Consensus       190 ~l~~L~~L~l~~~~~~-~~p~~~~~-~~L~~l~i~~~~~----~~~~~~~~~L~~L~L~~~~~~~~-~~~~~~~~~~L~~  262 (308)
                      .+++|+.|++++|.+. .+|..+.. ++|+.|++..+.+    +.+...+++|+.|+|+.|..... +..+.. +++|++
T Consensus       440 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~-l~~L~~  518 (768)
T 3rgz_A          440 SLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGR-LENLAI  518 (768)
T ss_dssp             GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGG-CTTCCE
T ss_pred             cCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhc-CCCCCE
Confidence            8888888888888866 56766655 8888888876653    44567788999999988876633 344444 489999


Q ss_pred             eecCCccchhhhhhccCCCCCCcccEEecccccccccccc
Q 037941          263 LHLDKLNGLQNVLHELDGEGFPRLKHLLVQNASEILYIVS  302 (308)
Q Consensus       263 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~  302 (308)
                      |+++++.....++..+  ..+++|+.|++++|+-...+|.
T Consensus       519 L~L~~N~l~~~~p~~l--~~l~~L~~L~Ls~N~l~g~ip~  556 (768)
T 3rgz_A          519 LKLSNNSFSGNIPAEL--GDCRSLIWLDLNTNLFNGTIPA  556 (768)
T ss_dssp             EECCSSCCEEECCGGG--GGCTTCCEEECCSSEEESBCCG
T ss_pred             EECCCCcccCcCCHHH--cCCCCCCEEECCCCccCCcCCh
Confidence            9999855444444333  5688999999999865556663

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.88  E-value=1.2e-21  Score=174.66  Aligned_cols=254  Identities=17%  Similarity=0.209  Sum_probs=173.0

Q ss_pred             cCCCCeeEEeecCCCCCCCCcC--CCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCCCCCCccccccc
Q 037941           35 MQKDPIAISHPCRDIQELPEKL--ECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVL  112 (308)
Q Consensus        35 ~~~~l~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~~~~l~~l  112 (308)
                      ..++++++++.++.+..+|+..  .+++|++|++++|.++. ++...+..+++|++|++++|.+..+|+..     ++.+
T Consensus        43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-----~~~l  116 (390)
T 3o6n_A           43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEE-IDTYAFAYAHTIQKLYMGFNAIRYLPPHV-----FQNV  116 (390)
T ss_dssp             GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCE-ECTTTTTTCTTCCEEECCSSCCCCCCTTT-----TTTC
T ss_pred             ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccc-cChhhccCCCCcCEEECCCCCCCcCCHHH-----hcCC
Confidence            3689999999999999999865  89999999999999874 44444579999999999999999887664     8999


Q ss_pred             ccccEEeecCCcCcccchh-hhCcCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCcccccccCCccc--------
Q 037941          113 KKLVIFSFRNSHIEQLPEE-IGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEVEGQNNA--------  183 (308)
Q Consensus       113 ~~L~~L~l~~~~i~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~--------  183 (308)
                      ++|++|++++|.++.+|.. +..+++|+.|++++|. ++.++...+..+++|+.|++++|.+.....+....        
T Consensus       117 ~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~  195 (390)
T 3o6n_A          117 PLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSY  195 (390)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCS
T ss_pred             CCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCc-cCccChhhccCCCCCCEEECCCCcCCccccccccccceeeccc
Confidence            9999999999999999876 5899999999999998 66776666899999999999999988432210000        


Q ss_pred             -chhhhhcCCCCCEEEeeeccCccccchhhccCCceeEeeccCcc--cccCCCCcCceEEEeecCchhhh-hhHHHHhcc
Q 037941          184 -SLAELNQLSRLTTLEMLILDAQVMPRELFSLGLERNKIFLGDVW--SWTGKYETSRTLKLKLDNRMYLE-HGIKMLLRR  259 (308)
Q Consensus       184 -~~~~l~~l~~L~~L~l~~~~~~~~p~~~~~~~L~~l~i~~~~~~--~~~~~~~~L~~L~L~~~~~~~~~-~~~~~~~~~  259 (308)
                       .+..+...+.|+.|++++|.+..+|... ..+|+.|++..+.+.  .+...+++|+.|+|+.|...... ..+.. +++
T Consensus       196 n~l~~~~~~~~L~~L~l~~n~l~~~~~~~-~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~-l~~  273 (390)
T 3o6n_A          196 NLLSTLAIPIAVEELDASHNSINVVRGPV-NVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVK-MQR  273 (390)
T ss_dssp             SCCSEEECCSSCSEEECCSSCCCEEECCC-CSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTT-CSS
T ss_pred             ccccccCCCCcceEEECCCCeeeeccccc-cccccEEECCCCCCcccHHHcCCCCccEEECCCCcCCCcChhHccc-ccc
Confidence             0001122234555555555544444332 245666665544432  23455666666666666544332 22222 366


Q ss_pred             cceeecCCccchhhhhhccCCCCCCcccEEeccccccccccc
Q 037941          260 TEDLHLDKLNGLQNVLHELDGEGFPRLKHLLVQNASEILYIV  301 (308)
Q Consensus       260 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~  301 (308)
                      |++|++++ +.++.++..  ...+++|+.|++++| ++..+|
T Consensus       274 L~~L~L~~-n~l~~~~~~--~~~l~~L~~L~L~~n-~l~~~~  311 (390)
T 3o6n_A          274 LERLYISN-NRLVALNLY--GQPIPTLKVLDLSHN-HLLHVE  311 (390)
T ss_dssp             CCEEECCS-SCCCEEECS--SSCCTTCCEEECCSS-CCCCCG
T ss_pred             CCEEECCC-CcCcccCcc--cCCCCCCCEEECCCC-cceecC
Confidence            66666666 344443221  244566666666666 454444

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.88  E-value=1.5e-22  Score=174.57  Aligned_cols=238  Identities=18%  Similarity=0.154  Sum_probs=186.5

Q ss_pred             eeEEeecCCCCCCCCcCCCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCC---CCCCCCccccccccccc
Q 037941           40 IAISHPCRDIQELPEKLECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSL---PSTLGDVATVGVLKKLV  116 (308)
Q Consensus        40 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l---p~~~~~~~~l~~l~~L~  116 (308)
                      +.++.+++.+..+|... .+++++|++++|.++ .++..++.++++|++|++++|.+..+   |..      +..+++|+
T Consensus        10 ~~l~c~~~~l~~ip~~~-~~~l~~L~L~~n~l~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~------~~~~~~L~   81 (306)
T 2z66_A           10 TEIRCNSKGLTSVPTGI-PSSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQS------DFGTTSLK   81 (306)
T ss_dssp             TEEECCSSCCSSCCSCC-CTTCCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCEEEEEEHH------HHSCSCCC
T ss_pred             CEEEcCCCCcccCCCCC-CCCCCEEECCCCccC-ccCHhHhhccccCCEEECCCCccCcccCcccc------cccccccC
Confidence            36788888888888755 368999999999987 67777678999999999999998854   454      66789999


Q ss_pred             EEeecCCcCcccchhhhCcCCCCEEecCCCCCCCccCc-chhcCCCCCceEEccCCcccccccCCcccchhhhhcCCCCC
Q 037941          117 IFSFRNSHIEQLPEEIGQLTRLKLLDLSTCSKLKSIRP-NVISNLPRLEELYMGNSFTHWEVEGQNNASLAELNQLSRLT  195 (308)
Q Consensus       117 ~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~  195 (308)
                      +|++++|.++.+|..+..+++|+.|++++|. ++.++. ..+..+++|++|++++|.+.+..       +..+..+++|+
T Consensus        82 ~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-------~~~~~~l~~L~  153 (306)
T 2z66_A           82 YLDLSFNGVITMSSNFLGLEQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHTHTRVAF-------NGIFNGLSSLE  153 (306)
T ss_dssp             EEECCSCSEEEEEEEEETCTTCCEEECTTSE-EESSTTTTTTTTCTTCCEEECTTSCCEECS-------TTTTTTCTTCC
T ss_pred             EEECCCCccccChhhcCCCCCCCEEECCCCc-ccccccchhhhhccCCCEEECCCCcCCccc-------hhhcccCcCCC
Confidence            9999999999999889999999999999998 666654 44888999999999999887332       24677889999


Q ss_pred             EEEeeeccCcc--ccchhhc-cCCceeEeeccCcc----cccCCCCcCceEEEeecCchhhhhhHHHHhcccceeecCCc
Q 037941          196 TLEMLILDAQV--MPRELFS-LGLERNKIFLGDVW----SWTGKYETSRTLKLKLDNRMYLEHGIKMLLRRTEDLHLDKL  268 (308)
Q Consensus       196 ~L~l~~~~~~~--~p~~~~~-~~L~~l~i~~~~~~----~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~  268 (308)
                      +|++++|.+..  +|..+.. ++|+.|++..+.+.    ..+..+++|+.|+|+.|............+++|++|++++ 
T Consensus       154 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~-  232 (306)
T 2z66_A          154 VLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSL-  232 (306)
T ss_dssp             EEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTT-
T ss_pred             EEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCC-
Confidence            99999998765  6666555 89999998877643    3466788999999999876654433333358999999998 


Q ss_pred             cchhhhhhccCCCCCC-cccEEeccccc
Q 037941          269 NGLQNVLHELDGEGFP-RLKHLLVQNAS  295 (308)
Q Consensus       269 ~~~~~~~~~~~~~~~~-~L~~L~l~~c~  295 (308)
                      +.++...+.. ...++ +|+.|++++|+
T Consensus       233 N~l~~~~~~~-~~~~~~~L~~L~L~~N~  259 (306)
T 2z66_A          233 NHIMTSKKQE-LQHFPSSLAFLNLTQND  259 (306)
T ss_dssp             SCCCBCSSSS-CCCCCTTCCEEECTTCC
T ss_pred             CCCcccCHHH-HHhhhccCCEEEccCCC
Confidence            4555443322 24564 89999999874

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.88  E-value=6.6e-21  Score=173.74  Aligned_cols=223  Identities=18%  Similarity=0.216  Sum_probs=114.9

Q ss_pred             chhhHhhhhcCCCCeeEEeecCCCCCCCCcCCCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCCCCC-
Q 037941           26 DLREVFEDLMQKDPIAISHPCRDIQELPEKLECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLG-  104 (308)
Q Consensus        26 ~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~-  104 (308)
                      .+..++.....+++++|++++|.+..+++...+++|++|++++|.++. ++.  +.++++|++|++++|.+..+|. ++ 
T Consensus        79 ~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~-~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~  154 (466)
T 1o6v_A           79 QLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITD-IDP--LKNLTNLNRLELSSNTISDISA-LSG  154 (466)
T ss_dssp             CCCCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC-CGG--GTTCTTCSEEEEEEEEECCCGG-GTT
T ss_pred             ccCCchhhhccccCCEEECCCCccccChhhcCCCCCCEEECCCCCCCC-ChH--HcCCCCCCEEECCCCccCCChh-hcc
Confidence            334444344456667777776666665553366666666666666553 222  3455566666665555443322 00 


Q ss_pred             --------------Cccc----------------------ccccccccEEeecCCcCcccchhhhCcCCCCEEecCCCCC
Q 037941          105 --------------DVAT----------------------VGVLKKLVIFSFRNSHIEQLPEEIGQLTRLKLLDLSTCSK  148 (308)
Q Consensus       105 --------------~~~~----------------------l~~l~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~  148 (308)
                                    .+..                      +..+++|++|++++|.++.++. ++.+++|+.|++++|. 
T Consensus       155 l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~-  232 (466)
T 1o6v_A          155 LTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQ-  232 (466)
T ss_dssp             CTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSC-
T ss_pred             CCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCChhhccCCCCCEEEecCCccccccc-ccccCCCCEEECCCCC-
Confidence                          0011                      4444555555555555444333 4445555555555554 


Q ss_pred             CCccCcchhcCCCCCceEEccCCcccccccCCcccchhhhhcCCCCCEEEeeeccCccccchhhccCCceeEeeccCccc
Q 037941          149 LKSIRPNVISNLPRLEELYMGNSFTHWEVEGQNNASLAELNQLSRLTTLEMLILDAQVMPRELFSLGLERNKIFLGDVWS  228 (308)
Q Consensus       149 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~~~~~~L~~l~i~~~~~~~  228 (308)
                      ++.++.  +..+++|+.|++++|.+.+.         ..+..+++|+.|++++|.+..++.....++|+.|++..+.+..
T Consensus       233 l~~~~~--l~~l~~L~~L~l~~n~l~~~---------~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~  301 (466)
T 1o6v_A          233 LKDIGT--LASLTNLTDLDLANNQISNL---------APLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLED  301 (466)
T ss_dssp             CCCCGG--GGGCTTCSEEECCSSCCCCC---------GGGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSC
T ss_pred             cccchh--hhcCCCCCEEECCCCccccc---------hhhhcCCCCCEEECCCCccCccccccCCCccCeEEcCCCcccC
Confidence            344432  45566666666666655521         1255666677777777666666553223666666665554332


Q ss_pred             c--cCCCCcCceEEEeecCchhhhhhHHHHhcccceeecCC
Q 037941          229 W--TGKYETSRTLKLKLDNRMYLEHGIKMLLRRTEDLHLDK  267 (308)
Q Consensus       229 ~--~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~  267 (308)
                      .  .+.+++|+.|+|+.|....... +.. +++|++|++++
T Consensus       302 ~~~~~~l~~L~~L~L~~n~l~~~~~-~~~-l~~L~~L~l~~  340 (466)
T 1o6v_A          302 ISPISNLKNLTYLTLYFNNISDISP-VSS-LTKLQRLFFYN  340 (466)
T ss_dssp             CGGGGGCTTCSEEECCSSCCSCCGG-GGG-CTTCCEEECCS
T ss_pred             chhhcCCCCCCEEECcCCcCCCchh-hcc-CccCCEeECCC
Confidence            2  3445566666665554333221 222 25555555554

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.87  E-value=8.4e-21  Score=161.92  Aligned_cols=215  Identities=21%  Similarity=0.276  Sum_probs=172.8

Q ss_pred             CeeEEeecCCCCCCCCcCCCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCC-CCCCCCcccccccccccE
Q 037941           39 PIAISHPCRDIQELPEKLECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSL-PSTLGDVATVGVLKKLVI  117 (308)
Q Consensus        39 l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~~~~~~~l~~l~~L~~  117 (308)
                      -+.++.+++.+..+|... .+++++|++++|.++. ++...+..+++|++|++++|.+..+ |..      +..+++|++
T Consensus        13 ~~~~~c~~~~l~~ip~~~-~~~l~~L~l~~n~i~~-~~~~~~~~~~~L~~L~l~~n~l~~~~~~~------~~~l~~L~~   84 (285)
T 1ozn_A           13 KVTTSCPQQGLQAVPVGI-PAASQRIFLHGNRISH-VPAASFRACRNLTILWLHSNVLARIDAAA------FTGLALLEQ   84 (285)
T ss_dssp             SCEEECCSSCCSSCCTTC-CTTCSEEECTTSCCCE-ECTTTTTTCTTCCEEECCSSCCCEECTTT------TTTCTTCCE
T ss_pred             CeEEEcCcCCcccCCcCC-CCCceEEEeeCCcCCc-cCHHHcccCCCCCEEECCCCccceeCHhh------cCCccCCCE
Confidence            367888888888888644 5799999999999884 4544458999999999999999977 445      899999999


Q ss_pred             EeecCCc-Cccc-chhhhCcCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCcccccccCCcccchhhhhcCCCCC
Q 037941          118 FSFRNSH-IEQL-PEEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEVEGQNNASLAELNQLSRLT  195 (308)
Q Consensus       118 L~l~~~~-i~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~  195 (308)
                      |++++|. ++.+ |..+..+++|+.|++++|. ++.++...+..+++|++|++++|.+....+       ..+..+++|+
T Consensus        85 L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-------~~~~~l~~L~  156 (285)
T 1ozn_A           85 LDLSDNAQLRSVDPATFHGLGRLHTLHLDRCG-LQELGPGLFRGLAALQYLYLQDNALQALPD-------DTFRDLGNLT  156 (285)
T ss_dssp             EECCSCTTCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCT-------TTTTTCTTCC
T ss_pred             EeCCCCCCccccCHHHhcCCcCCCEEECCCCc-CCEECHhHhhCCcCCCEEECCCCcccccCH-------hHhccCCCcc
Confidence            9999997 8877 6779999999999999998 666655558899999999999999883322       4578899999


Q ss_pred             EEEeeeccCccccchhhc--cCCceeEeeccCcc----cccCCCCcCceEEEeecCchhhhhhHHHHhcccceeecCCcc
Q 037941          196 TLEMLILDAQVMPRELFS--LGLERNKIFLGDVW----SWTGKYETSRTLKLKLDNRMYLEHGIKMLLRRTEDLHLDKLN  269 (308)
Q Consensus       196 ~L~l~~~~~~~~p~~~~~--~~L~~l~i~~~~~~----~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~  269 (308)
                      .|++++|.++.+|.....  ++|+.|++..+.+.    .++..+++|+.|+++.|...........-+++|++|++++.+
T Consensus       157 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~  236 (285)
T 1ozn_A          157 HLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNP  236 (285)
T ss_dssp             EEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSC
T ss_pred             EEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCC
Confidence            999999999988875433  88999888776643    346677889999998887665544433335889999988744

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.87  E-value=1.6e-20  Score=175.86  Aligned_cols=232  Identities=18%  Similarity=0.108  Sum_probs=134.1

Q ss_pred             ecccchhhHhhhhcCCCCeeEEeecCCCCCCCCcCCCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCC
Q 037941           22 QIISDLREVFEDLMQKDPIAISHPCRDIQELPEKLECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPS  101 (308)
Q Consensus        22 ~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~  101 (308)
                      ..+.++..+|.. ..++++.|++++|.+..+|.  .+++|++|++++|.++ .+|.    .+++|++|++++|.+..+|.
T Consensus        47 ls~n~L~~lp~~-l~~~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N~l~-~lp~----~l~~L~~L~Ls~N~l~~l~~  118 (622)
T 3g06_A           47 VGESGLTTLPDC-LPAHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLT-SLPV----LPPGLLELSIFSNPLTHLPA  118 (622)
T ss_dssp             CCSSCCSCCCSC-CCTTCSEEEECSCCCSCCCC--CCTTCCEEEECSCCCS-CCCC----CCTTCCEEEECSCCCCCCCC
T ss_pred             ecCCCcCccChh-hCCCCcEEEecCCCCCCCCC--cCCCCCEEEcCCCcCC-cCCC----CCCCCCEEECcCCcCCCCCC
Confidence            345666666643 34678888888887777776  5677888888887766 4444    56777777777777777666


Q ss_pred             CCCCcccccccccccEEeecCCcCcccchhhhCcCCCCEEecCCCCCCCccCcchhc-----------------CCCCCc
Q 037941          102 TLGDVATVGVLKKLVIFSFRNSHIEQLPEEIGQLTRLKLLDLSTCSKLKSIRPNVIS-----------------NLPRLE  164 (308)
Q Consensus       102 ~~~~~~~l~~l~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~-----------------~l~~L~  164 (308)
                      .         +++|++|++++|.++.+|..   +++|++|++++|. ++.+|.. +.                 .+++|+
T Consensus       119 ~---------l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~-l~~l~~~-~~~L~~L~L~~N~l~~l~~~~~~L~  184 (622)
T 3g06_A          119 L---------PSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQ-LASLPAL-PSELCKLWAYNNQLTSLPMLPSGLQ  184 (622)
T ss_dssp             C---------CTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSC-CSCCCCC-CTTCCEEECCSSCCSCCCCCCTTCC
T ss_pred             C---------CCCcCEEECCCCCCCcCCCC---CCCCCEEECcCCc-CCCcCCc-cCCCCEEECCCCCCCCCcccCCCCc
Confidence            3         34555666666665555542   2556666666555 4444431 11                 124444


Q ss_pred             eEEccCCcccccccCCcccchhhhhcCCCCCEEEeeeccCccccchhhccCCceeEeeccCcccccCCCCcCceEEEeec
Q 037941          165 ELYMGNSFTHWEVEGQNNASLAELNQLSRLTTLEMLILDAQVMPRELFSLGLERNKIFLGDVWSWTGKYETSRTLKLKLD  244 (308)
Q Consensus       165 ~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~~~~~~L~~l~i~~~~~~~~~~~~~~L~~L~L~~~  244 (308)
                      .|++++|.+.+.+.           .+++|+.|++++|.++.+|..  .++|+.|++..+.+......+++|+.|+|+.|
T Consensus       185 ~L~Ls~N~l~~l~~-----------~~~~L~~L~L~~N~l~~l~~~--~~~L~~L~Ls~N~L~~lp~~l~~L~~L~Ls~N  251 (622)
T 3g06_A          185 ELSVSDNQLASLPT-----------LPSELYKLWAYNNRLTSLPAL--PSGLKELIVSGNRLTSLPVLPSELKELMVSGN  251 (622)
T ss_dssp             EEECCSSCCSCCCC-----------CCTTCCEEECCSSCCSSCCCC--CTTCCEEECCSSCCSCCCCCCTTCCEEECCSS
T ss_pred             EEECCCCCCCCCCC-----------ccchhhEEECcCCcccccCCC--CCCCCEEEccCCccCcCCCCCCcCcEEECCCC
Confidence            44444444441110           124455555555555555532  25566666665555554455666777777666


Q ss_pred             CchhhhhhHHHHhcccceeecCCccchhhhhhccCCCCCCcccEEeccccc
Q 037941          245 NRMYLEHGIKMLLRRTEDLHLDKLNGLQNVLHELDGEGFPRLKHLLVQNAS  295 (308)
Q Consensus       245 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~  295 (308)
                      .....+.    .+++|+.|++++ +.++.++..+  ..+++|+.|++++|+
T Consensus       252 ~L~~lp~----~~~~L~~L~Ls~-N~L~~lp~~l--~~l~~L~~L~L~~N~  295 (622)
T 3g06_A          252 RLTSLPM----LPSGLLSLSVYR-NQLTRLPESL--IHLSSETTVNLEGNP  295 (622)
T ss_dssp             CCSCCCC----CCTTCCEEECCS-SCCCSCCGGG--GGSCTTCEEECCSCC
T ss_pred             CCCcCCc----ccccCcEEeCCC-CCCCcCCHHH--hhccccCEEEecCCC
Confidence            5443332    336677777776 4455544322  456777777777764

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.87  E-value=5.8e-22  Score=186.37  Aligned_cols=240  Identities=15%  Similarity=0.096  Sum_probs=119.4

Q ss_pred             hcCCCCeeEEeecCCCCCCCCcCCCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCC-------------------
Q 037941           34 LMQKDPIAISHPCRDIQELPEKLECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGF-------------------   94 (308)
Q Consensus        34 ~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~-------------------   94 (308)
                      ...++++.|++.++.+..+|....+++|++|++++|.+ +.+|. +  .+++|++|++++|                   
T Consensus       282 ~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l-~~lp~-~--~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l  357 (606)
T 3vq2_A          282 HCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQL-KQFPT-L--DLPFLKSLTLTMNKGSISFKKVALPSLSYLDL  357 (606)
T ss_dssp             GGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCC-SSCCC-C--CCSSCCEEEEESCSSCEECCCCCCTTCCEEEC
T ss_pred             ccCCCCCEEEecCccchhhhhccccccCCEEEcccccC-ccccc-C--CCCccceeeccCCcCccchhhccCCCCCEEEC
Confidence            34566666666666666666322666666666666665 34552 2  4555555555555                   


Q ss_pred             ---CCCCC---CCCCCCcccccccccccEEeecCCcCcccchhhhCcCCCCEEecCCCCCCCccCcchhcCCCCCceEEc
Q 037941           95 ---HFPSL---PSTLGDVATVGVLKKLVIFSFRNSHIEQLPEEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYM  168 (308)
Q Consensus        95 ---~~~~l---p~~~~~~~~l~~l~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l  168 (308)
                         .+..+   |..      +..+++|++|++++|.++.+|..+..+++|+.|++++|......|...+..+++|+.|++
T Consensus       358 s~n~l~~~~~~~~~------~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l  431 (606)
T 3vq2_A          358 SRNALSFSGCCSYS------DLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDI  431 (606)
T ss_dssp             CSSCEEEEEECCHH------HHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEEC
T ss_pred             cCCccCCCcchhhh------hccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEEC
Confidence               33322   222      344444444554444444444444444555555555544222222122444555555555


Q ss_pred             cCCcccccccCCcccchhhhhcCCCCCEEEeeeccCcc--ccchhhc-cCCceeEeeccCcc----cccCCCCcCceEEE
Q 037941          169 GNSFTHWEVEGQNNASLAELNQLSRLTTLEMLILDAQV--MPRELFS-LGLERNKIFLGDVW----SWTGKYETSRTLKL  241 (308)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~--~p~~~~~-~~L~~l~i~~~~~~----~~~~~~~~L~~L~L  241 (308)
                      ++|.+.+.       .+..+..+++|++|++++|.+..  +|..+.. ++|+.|++..+.+.    .++..+++|+.|+|
T Consensus       432 ~~n~l~~~-------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  504 (606)
T 3vq2_A          432 SYTNTKID-------FDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNM  504 (606)
T ss_dssp             TTSCCEEC-------CTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred             cCCCCCcc-------chhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEEC
Confidence            55544421       12345555666666666665443  3433333 56666666554432    23445566666666


Q ss_pred             eecCchhhh-hhHHHHhcccceeecCCccchhhhhhccCCCCCC-cccEEecccc
Q 037941          242 KLDNRMYLE-HGIKMLLRRTEDLHLDKLNGLQNVLHELDGEGFP-RLKHLLVQNA  294 (308)
Q Consensus       242 ~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~-~L~~L~l~~c  294 (308)
                      +.|...... ..+.. +++|++|++++ +.++.++..+  ..++ +|+.|++.+|
T Consensus       505 s~N~l~~~~~~~~~~-l~~L~~L~l~~-N~l~~~p~~~--~~l~~~L~~l~l~~N  555 (606)
T 3vq2_A          505 SHNNLLFLDSSHYNQ-LYSLSTLDCSF-NRIETSKGIL--QHFPKSLAFFNLTNN  555 (606)
T ss_dssp             CSSCCSCEEGGGTTT-CTTCCEEECTT-SCCCCEESCG--GGSCTTCCEEECCSC
T ss_pred             CCCcCCCcCHHHccC-CCcCCEEECCC-CcCcccCHhH--hhhcccCcEEEccCC
Confidence            666544432 22222 36666666666 3344443321  3344 3666666655

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.87  E-value=2.9e-21  Score=182.07  Aligned_cols=145  Identities=19%  Similarity=0.244  Sum_probs=120.9

Q ss_pred             ecccchhhHhhhhcCCCCeeEEeecCCCCCCCCc-C-CCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCC
Q 037941           22 QIISDLREVFEDLMQKDPIAISHPCRDIQELPEK-L-ECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSL   99 (308)
Q Consensus        22 ~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l   99 (308)
                      |.+.++.++|+ ..++++++|++++|.++.+++. + .+++|++|++++|.++ .+++..|.++++|++|+|++|+++.+
T Consensus        38 c~~~~l~~vP~-~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~-~i~~~~f~~L~~L~~L~Ls~N~l~~l  115 (635)
T 4g8a_A           38 CMELNFYKIPD-NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSL  115 (635)
T ss_dssp             CTTSCCSSCCS-SSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCEE
T ss_pred             CCCCCcCccCC-CCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCC-CcChhHhcCCCCCCEEEccCCcCCCC
Confidence            55678888884 4577999999999999988764 4 8999999999999987 55665568999999999999999998


Q ss_pred             CCCCCCcccccccccccEEeecCCcCcccch-hhhCcCCCCEEecCCCCCCCc--cCcchhcCCCCCceEEccCCcccc
Q 037941          100 PSTLGDVATVGVLKKLVIFSFRNSHIEQLPE-EIGQLTRLKLLDLSTCSKLKS--IRPNVISNLPRLEELYMGNSFTHW  175 (308)
Q Consensus       100 p~~~~~~~~l~~l~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~l~~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~  175 (308)
                      |+..     |..+++|++|++++|.++.+|. .++.+++|+.|++++|. +..  .|.. ++.+++|++|++++|.+.+
T Consensus       116 ~~~~-----f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~-~~~l~~L~~L~L~~N~l~~  187 (635)
T 4g8a_A          116 ALGA-----FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEY-FSNLTNLEHLDLSSNKIQS  187 (635)
T ss_dssp             CGGG-----GTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSC-CCCCCCCGG-GGGCTTCCEEECCSSCCCE
T ss_pred             CHHH-----hcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCc-cccCCCchh-hccchhhhhhcccCccccc
Confidence            8764     8899999999999999998875 48899999999999988 544  3443 7888999999998887654

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.86  E-value=7.5e-21  Score=172.74  Aligned_cols=118  Identities=17%  Similarity=0.204  Sum_probs=68.3

Q ss_pred             CCCCeeEEeecCCCCCCCCcCCCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCCCCCCcccccccccc
Q 037941           36 QKDPIAISHPCRDIQELPEKLECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKKL  115 (308)
Q Consensus        36 ~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~~~~l~~l~~L  115 (308)
                      .+++++|++++|.+..+|....+++|++|++++|.+++ ++   ++.+++|++|++++|.+..+|        ++.+++|
T Consensus        41 l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~-~~---~~~l~~L~~L~Ls~N~l~~~~--------~~~l~~L  108 (457)
T 3bz5_A           41 LATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITT-LD---LSQNTNLTYLACDSNKLTNLD--------VTPLTKL  108 (457)
T ss_dssp             HTTCCEEECCSSCCCCCTTGGGCTTCSEEECCSSCCSC-CC---CTTCTTCSEEECCSSCCSCCC--------CTTCTTC
T ss_pred             cCCCCEEEccCCCcccChhhcccCCCCEEEccCCcCCe-Ec---cccCCCCCEEECcCCCCceee--------cCCCCcC
Confidence            56677777777766666533366777777777766653 22   356666677777666666552        3455566


Q ss_pred             cEEeecCCcCcccchhhhCcCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCC
Q 037941          116 VIFSFRNSHIEQLPEEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNS  171 (308)
Q Consensus       116 ~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~  171 (308)
                      ++|++++|.++.+|  ++.+++|+.|++++|. ++.++   ++.+++|++|++++|
T Consensus       109 ~~L~L~~N~l~~l~--~~~l~~L~~L~l~~N~-l~~l~---l~~l~~L~~L~l~~n  158 (457)
T 3bz5_A          109 TYLNCDTNKLTKLD--VSQNPLLTYLNCARNT-LTEID---VSHNTQLTELDCHLN  158 (457)
T ss_dssp             CEEECCSSCCSCCC--CTTCTTCCEEECTTSC-CSCCC---CTTCTTCCEEECTTC
T ss_pred             CEEECCCCcCCeec--CCCCCcCCEEECCCCc-cceec---cccCCcCCEEECCCC
Confidence            66666666555544  5555555555555555 33332   344445555555444

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.86  E-value=3.8e-21  Score=178.71  Aligned_cols=257  Identities=14%  Similarity=0.138  Sum_probs=170.2

Q ss_pred             hcCCCCeeEEeecCCCCCCCC-cC-CCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCC--CCCCCCCcccc
Q 037941           34 LMQKDPIAISHPCRDIQELPE-KL-ECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPS--LPSTLGDVATV  109 (308)
Q Consensus        34 ~~~~~l~~L~l~~~~~~~~~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--lp~~~~~~~~l  109 (308)
                      ...+++++|++++|.+..+++ .+ .+++|++|++++|.+++ ++...++++++|++|++++|.+..  .|..      +
T Consensus        47 ~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~------~  119 (549)
T 2z81_A           47 RACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSS-LSSSWFGPLSSLKYLNLMGNPYQTLGVTSL------F  119 (549)
T ss_dssp             SSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCS-CCHHHHTTCTTCCEEECTTCCCSSSCSSCS------C
T ss_pred             hcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCc-cCHHHhccCCCCcEEECCCCcccccchhhh------h
Confidence            457889999999999977664 44 89999999999999884 455545789999999999999884  4555      6


Q ss_pred             cccccccEEeecCCc-Ccccc-hhhhCcCCCCEEecCCCCCCCccCcc-----------------------hhcCCCCCc
Q 037941          110 GVLKKLVIFSFRNSH-IEQLP-EEIGQLTRLKLLDLSTCSKLKSIRPN-----------------------VISNLPRLE  164 (308)
Q Consensus       110 ~~l~~L~~L~l~~~~-i~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~-----------------------~~~~l~~L~  164 (308)
                      +.+++|++|++++|. +..+| ..+..+++|+.|++++|......|..                       .+..+++|+
T Consensus       120 ~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~  199 (549)
T 2z81_A          120 PNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVR  199 (549)
T ss_dssp             TTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBS
T ss_pred             hccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhccccc
Confidence            777777777777776 55555 45677777777777776633223322                       223467788


Q ss_pred             eEEccCCcccccccCCcc------------------------cchh----------------------------------
Q 037941          165 ELYMGNSFTHWEVEGQNN------------------------ASLA----------------------------------  186 (308)
Q Consensus       165 ~L~l~~~~~~~~~~~~~~------------------------~~~~----------------------------------  186 (308)
                      .|++++|.+.+.......                        ....                                  
T Consensus       200 ~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~  279 (549)
T 2z81_A          200 YLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSE  279 (549)
T ss_dssp             EEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCC
T ss_pred             EEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhh
Confidence            888888777653100000                        0000                                  


Q ss_pred             -------------------------hhhcCCCCCEEEeeeccCccccchhh--ccCCceeEeeccCccc-------ccCC
Q 037941          187 -------------------------ELNQLSRLTTLEMLILDAQVMPRELF--SLGLERNKIFLGDVWS-------WTGK  232 (308)
Q Consensus       187 -------------------------~l~~l~~L~~L~l~~~~~~~~p~~~~--~~~L~~l~i~~~~~~~-------~~~~  232 (308)
                                               .....++|+.|++++|.++.+|..++  .++|+.|++..+.+..       +.+.
T Consensus       280 l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~  359 (549)
T 2z81_A          280 LGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGA  359 (549)
T ss_dssp             CTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTS
T ss_pred             hcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccCCccccccccchhhhhc
Confidence                                     01123467777777777777787764  3888888887776533       2567


Q ss_pred             CCcCceEEEeecCchhhhh--hHHHHhcccceeecCCccchhhhhhccCCCCCCcccEEeccccccccccc
Q 037941          233 YETSRTLKLKLDNRMYLEH--GIKMLLRRTEDLHLDKLNGLQNVLHELDGEGFPRLKHLLVQNASEILYIV  301 (308)
Q Consensus       233 ~~~L~~L~L~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~  301 (308)
                      +++|+.|+|+.|.......  .....+++|++|++++ +.++.++..+  ..+++|++|++++| +++.++
T Consensus       360 l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~-N~l~~lp~~~--~~~~~L~~L~Ls~N-~l~~l~  426 (549)
T 2z81_A          360 WPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISR-NTFHPMPDSC--QWPEKMRFLNLSST-GIRVVK  426 (549)
T ss_dssp             STTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTT-CCCCCCCSCC--CCCTTCCEEECTTS-CCSCCC
T ss_pred             cccCcEEEccCCcccccccchhhhhcCCCCCEEECCC-CCCccCChhh--cccccccEEECCCC-Cccccc
Confidence            7888888888887655432  2223348888998888 4555543322  45677777777777 455554

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.86  E-value=7.2e-23  Score=177.53  Aligned_cols=240  Identities=14%  Similarity=0.065  Sum_probs=154.4

Q ss_pred             cCCCCeeEEeecCCCCCCCC-cC-CCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCCCCCCccccccc
Q 037941           35 MQKDPIAISHPCRDIQELPE-KL-ECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVL  112 (308)
Q Consensus        35 ~~~~l~~L~l~~~~~~~~~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~~~~l~~l  112 (308)
                      ..+++++|++++|.+..+++ .+ .+++|++|++++|.+++..+   +..+++|++|++++|.+..+|.          .
T Consensus        32 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~---~~~l~~L~~L~Ls~n~l~~l~~----------~   98 (317)
T 3o53_A           32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD---LESLSTLRTLDLNNNYVQELLV----------G   98 (317)
T ss_dssp             TGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE---ETTCTTCCEEECCSSEEEEEEE----------C
T ss_pred             cCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh---hhhcCCCCEEECcCCccccccC----------C
Confidence            45689999999999987764 33 89999999999999875433   5789999999999998775543          3


Q ss_pred             ccccEEeecCCcCcccchhhhCcCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCcccccccCCcccchhhh-hcC
Q 037941          113 KKLVIFSFRNSHIEQLPEEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEVEGQNNASLAEL-NQL  191 (308)
Q Consensus       113 ~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l-~~l  191 (308)
                      ++|++|++++|.++.++.  ..+++|+.|++++|. ++.++...+..+++|++|++++|.+.+..+       ..+ ..+
T Consensus        99 ~~L~~L~l~~n~l~~~~~--~~~~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-------~~~~~~l  168 (317)
T 3o53_A           99 PSIETLHAANNNISRVSC--SRGQGKKNIYLANNK-ITMLRDLDEGCRSRVQYLDLKLNEIDTVNF-------AELAASS  168 (317)
T ss_dssp             TTCCEEECCSSCCSEEEE--CCCSSCEEEECCSSC-CCSGGGBCTGGGSSEEEEECTTSCCCEEEG-------GGGGGGT
T ss_pred             CCcCEEECCCCccCCcCc--cccCCCCEEECCCCC-CCCccchhhhccCCCCEEECCCCCCCcccH-------HHHhhcc
Confidence            677777777777775553  235667777777776 555554446667777777777777663221       233 356


Q ss_pred             CCCCEEEeeeccCccccchhhccCCceeEeeccCccc---ccCCCCcCceEEEeecCchhhhhhHHHHhcccceeecCCc
Q 037941          192 SRLTTLEMLILDAQVMPRELFSLGLERNKIFLGDVWS---WTGKYETSRTLKLKLDNRMYLEHGIKMLLRRTEDLHLDKL  268 (308)
Q Consensus       192 ~~L~~L~l~~~~~~~~p~~~~~~~L~~l~i~~~~~~~---~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~  268 (308)
                      ++|+.|++++|.++.+|.....++|+.|++..+.+..   .+..+++|+.|+|+.|.....+..+.. +++|+.|+++++
T Consensus       169 ~~L~~L~L~~N~l~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~-l~~L~~L~l~~N  247 (317)
T 3o53_A          169 DTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRF-SQNLEHFDLRGN  247 (317)
T ss_dssp             TTCCEEECTTSCCCEEECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCC-CTTCCEEECTTC
T ss_pred             CcCCEEECCCCcCcccccccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCcccchhhHhhc-CCCCCEEEccCC
Confidence            7777777777777666655555677777766555432   244556677777776655544433333 366777777664


Q ss_pred             cchhhhhhccCCCCCCcccEEeccccccccc
Q 037941          269 NGLQNVLHELDGEGFPRLKHLLVQNASEILY  299 (308)
Q Consensus       269 ~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~  299 (308)
                      +......+.+ ...+++|+.|.+.+++.++.
T Consensus       248 ~~~~~~~~~~-~~~~~~L~~l~l~~~~~l~~  277 (317)
T 3o53_A          248 GFHCGTLRDF-FSKNQRVQTVAKQTVKKLTG  277 (317)
T ss_dssp             CCBHHHHHHH-HHTCHHHHHHHHHHHHHHHS
T ss_pred             CccCcCHHHH-HhccccceEEECCCchhccC
Confidence            3331222222 24456666666665544443

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.86  E-value=1e-20  Score=166.33  Aligned_cols=248  Identities=16%  Similarity=0.159  Sum_probs=185.6

Q ss_pred             CCeeEEeecCCCCCCCCcCCCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCCCCCCcccccccccccE
Q 037941           38 DPIAISHPCRDIQELPEKLECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKKLVI  117 (308)
Q Consensus        38 ~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~~~~l~~l~~L~~  117 (308)
                      .....+.+++.+..+|... .++|++|++++|.++ .++...+.++++|++|++++|.+..+++..     +..+++|++
T Consensus        32 ~~~~c~~~~~~l~~iP~~~-~~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-----~~~l~~L~~  104 (353)
T 2z80_A           32 RNGICKGSSGSLNSIPSGL-TEAVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGINTIEEDS-----FSSLGSLEH  104 (353)
T ss_dssp             TTSEEECCSTTCSSCCTTC-CTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTSCCCEECTTT-----TTTCTTCCE
T ss_pred             CCeEeeCCCCCcccccccc-cccCcEEECCCCcCc-ccCHHHhccCCCCCEEECCCCccCccCHhh-----cCCCCCCCE
Confidence            3345788888999998765 359999999999988 455544589999999999999999775543     889999999


Q ss_pred             EeecCCcCcccchh-hhCcCCCCEEecCCCCCCCccCc-chhcCCCCCceEEccCCc-ccccccCCcccchhhhhcCCCC
Q 037941          118 FSFRNSHIEQLPEE-IGQLTRLKLLDLSTCSKLKSIRP-NVISNLPRLEELYMGNSF-THWEVEGQNNASLAELNQLSRL  194 (308)
Q Consensus       118 L~l~~~~i~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~~l~~l~~L  194 (308)
                      |++++|.++.+|.. ++.+++|+.|++++|. ++.+|. ..+..+++|+.|++++|. +....       +..+..+++|
T Consensus       105 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~-------~~~~~~l~~L  176 (353)
T 2z80_A          105 LDLSYNYLSNLSSSWFKPLSSLTFLNLLGNP-YKTLGETSLFSHLTKLQILRVGNMDTFTKIQ-------RKDFAGLTFL  176 (353)
T ss_dssp             EECCSSCCSSCCHHHHTTCTTCSEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEEC-------TTTTTTCCEE
T ss_pred             EECCCCcCCcCCHhHhCCCccCCEEECCCCC-CcccCchhhhccCCCCcEEECCCCccccccC-------HHHccCCCCC
Confidence            99999999988876 8899999999999998 778887 558899999999999984 44221       3567889999


Q ss_pred             CEEEeeeccCccc-cchhhc-cCCceeEeeccCcccc----cCCCCcCceEEEeecCchhhhhh---HHHHhcccceeec
Q 037941          195 TTLEMLILDAQVM-PRELFS-LGLERNKIFLGDVWSW----TGKYETSRTLKLKLDNRMYLEHG---IKMLLRRTEDLHL  265 (308)
Q Consensus       195 ~~L~l~~~~~~~~-p~~~~~-~~L~~l~i~~~~~~~~----~~~~~~L~~L~L~~~~~~~~~~~---~~~~~~~L~~L~l  265 (308)
                      ++|++++|.+..+ |..+.. ++|+.|++..+.+...    ...+++|+.|+++.|........   .....+.++.+.+
T Consensus       177 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L  256 (353)
T 2z80_A          177 EELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTF  256 (353)
T ss_dssp             EEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEE
T ss_pred             CEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhcccc
Confidence            9999999998776 444444 7888888877665432    33578899999988765442111   1112355666666


Q ss_pred             CCccc----hhhhhhccCCCCCCcccEEeccccccccccccC
Q 037941          266 DKLNG----LQNVLHELDGEGFPRLKHLLVQNASEILYIVSS  303 (308)
Q Consensus       266 ~~~~~----~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~  303 (308)
                      .++.-    +..++..+  ..+++|+.|++++| +++.+|..
T Consensus       257 ~~~~l~~~~l~~l~~~l--~~l~~L~~L~Ls~N-~l~~i~~~  295 (353)
T 2z80_A          257 RNVKITDESLFQVMKLL--NQISGLLELEFSRN-QLKSVPDG  295 (353)
T ss_dssp             ESCBCCHHHHHHHHHHH--HTCTTCCEEECCSS-CCCCCCTT
T ss_pred             ccccccCcchhhhHHHH--hcccCCCEEECCCC-CCCccCHH
Confidence            65321    22222222  56899999999998 78888753

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.86  E-value=2.1e-20  Score=172.58  Aligned_cols=138  Identities=17%  Similarity=0.238  Sum_probs=113.5

Q ss_pred             ecccchhhHhhhhcCCCCeeEEeecCCCCCCCC-cC-CCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCC
Q 037941           22 QIISDLREVFEDLMQKDPIAISHPCRDIQELPE-KL-ECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSL   99 (308)
Q Consensus        22 ~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l   99 (308)
                      ..+.++..+|.. ..+++++|++++|.+..+++ .+ .+++|++|++++|.+++..|..+ .++++|++|++++|.+..+
T Consensus         7 ls~n~l~~ip~~-~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~l   84 (520)
T 2z7x_B            7 RSKNGLIHVPKD-LSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVF-KFNQELEYLDLSHNKLVKI   84 (520)
T ss_dssp             CTTSCCSSCCCS-CCTTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGG-TTCTTCCEEECCSSCCCEE
T ss_pred             cCCCCccccccc-ccccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHh-hcccCCCEEecCCCceeec
Confidence            346677778843 45899999999999988775 34 99999999999999985545554 7999999999999999988


Q ss_pred             CCCCCCcccccccccccEEeecCCcCcc--cchhhhCcCCCCEEecCCCCCCCccCcchhcCCCCC--ceEEccCCcc
Q 037941          100 PSTLGDVATVGVLKKLVIFSFRNSHIEQ--LPEEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRL--EELYMGNSFT  173 (308)
Q Consensus       100 p~~~~~~~~l~~l~~L~~L~l~~~~i~~--l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L--~~L~l~~~~~  173 (308)
                      |.       . .+++|++|++++|.++.  +|..++.+++|+.|++++|. ++..   .+..+++|  +.|++++|.+
T Consensus        85 p~-------~-~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~-l~~~---~~~~l~~L~L~~L~l~~n~l  150 (520)
T 2z7x_B           85 SC-------H-PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTH-LEKS---SVLPIAHLNISKVLLVLGET  150 (520)
T ss_dssp             EC-------C-CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESS-CCGG---GGGGGTTSCEEEEEEEECTT
T ss_pred             Cc-------c-ccCCccEEeccCCccccccchhhhccCCcceEEEecCcc-cchh---hccccccceeeEEEeecccc
Confidence            87       3 68999999999999985  67889999999999999998 4432   25666777  8888888776

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.86  E-value=1.2e-20  Score=171.28  Aligned_cols=242  Identities=17%  Similarity=0.198  Sum_probs=194.9

Q ss_pred             CCeeEEeecCCCCCCCCcCCCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCCCCCCcccccccccccE
Q 037941           38 DPIAISHPCRDIQELPEKLECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKKLVI  117 (308)
Q Consensus        38 ~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~~~~l~~l~~L~~  117 (308)
                      ..+.++..+..+..+|... .+++++|++++|.++...+.. |.++++|++|++++|.+..+++..     +..+++|++
T Consensus        55 ~~~~v~c~~~~l~~iP~~~-~~~l~~L~L~~n~i~~~~~~~-~~~l~~L~~L~Ls~n~i~~~~~~~-----~~~l~~L~~  127 (452)
T 3zyi_A           55 QFSKVVCTRRGLSEVPQGI-PSNTRYLNLMENNIQMIQADT-FRHLHHLEVLQLGRNSIRQIEVGA-----FNGLASLNT  127 (452)
T ss_dssp             SSCEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCEECTTT-TTTCTTCCEEECCSSCCCEECTTT-----TTTCTTCCE
T ss_pred             CCcEEEECCCCcCccCCCC-CCCccEEECcCCcCceECHHH-cCCCCCCCEEECCCCccCCcChhh-----ccCcccCCE
Confidence            3456777788888888655 369999999999998544444 479999999999999999877543     899999999


Q ss_pred             EeecCCcCcccchh-hhCcCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCcccccccCCcccchhhhhcCCCCCE
Q 037941          118 FSFRNSHIEQLPEE-IGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEVEGQNNASLAELNQLSRLTT  196 (308)
Q Consensus       118 L~l~~~~i~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~  196 (308)
                      |++++|.++.+|.. +..+++|+.|++++|. ++.++...+..+++|+.|++++|...+..+      ...+..+++|+.
T Consensus       128 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~------~~~~~~l~~L~~  200 (452)
T 3zyi_A          128 LELFDNWLTVIPSGAFEYLSKLRELWLRNNP-IESIPSYAFNRVPSLMRLDLGELKKLEYIS------EGAFEGLFNLKY  200 (452)
T ss_dssp             EECCSSCCSBCCTTTSSSCTTCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEEC------TTTTTTCTTCCE
T ss_pred             EECCCCcCCccChhhhcccCCCCEEECCCCC-cceeCHhHHhcCCcccEEeCCCCCCccccC------hhhccCCCCCCE
Confidence            99999999988754 8889999999999998 788888778999999999999864332111      246788999999


Q ss_pred             EEeeeccCccccchhhccCCceeEeeccCccc----ccCCCCcCceEEEeecCchhhhhhHHHHhcccceeecCCccchh
Q 037941          197 LEMLILDAQVMPRELFSLGLERNKIFLGDVWS----WTGKYETSRTLKLKLDNRMYLEHGIKMLLRRTEDLHLDKLNGLQ  272 (308)
Q Consensus       197 L~l~~~~~~~~p~~~~~~~L~~l~i~~~~~~~----~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  272 (308)
                      |++++|.++.+|......+|+.|++..+.+..    .+..+++|+.|+|+.|...........-+++|+.|++++ +.++
T Consensus       201 L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-N~l~  279 (452)
T 3zyi_A          201 LNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAH-NNLS  279 (452)
T ss_dssp             EECTTSCCSSCCCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS-SCCS
T ss_pred             EECCCCcccccccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCC-CcCC
Confidence            99999999999875555999999998776533    467889999999999876655433333359999999998 5667


Q ss_pred             hhhhccCCCCCCcccEEeccccc
Q 037941          273 NVLHELDGEGFPRLKHLLVQNAS  295 (308)
Q Consensus       273 ~~~~~~~~~~~~~L~~L~l~~c~  295 (308)
                      .++... ...+++|+.|++.+||
T Consensus       280 ~~~~~~-~~~l~~L~~L~L~~Np  301 (452)
T 3zyi_A          280 SLPHDL-FTPLRYLVELHLHHNP  301 (452)
T ss_dssp             CCCTTS-STTCTTCCEEECCSSC
T ss_pred             ccChHH-hccccCCCEEEccCCC
Confidence            655433 3668999999999884

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.86  E-value=2.5e-20  Score=157.84  Aligned_cols=192  Identities=23%  Similarity=0.318  Sum_probs=94.2

Q ss_pred             CeeEEeecCCCCCCCCcCCCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCCCCCCcccccccccccEE
Q 037941           39 PIAISHPCRDIQELPEKLECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKKLVIF  118 (308)
Q Consensus        39 l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~~~~l~~l~~L~~L  118 (308)
                      .+.++++++.+..+|.... ++++.|++++|.++ .++...+.++++|++|++++|.+..+|...     +..+++|++|
T Consensus        18 ~~~l~~~~~~l~~ip~~~~-~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~-----~~~l~~L~~L   90 (270)
T 2o6q_A           18 KNSVDCSSKKLTAIPSNIP-ADTKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQTLPAGI-----FKELKNLETL   90 (270)
T ss_dssp             TTEEECTTSCCSSCCSCCC-TTCSEEECCSSCCS-CCCTTSSSSCTTCCEEECCSSCCSCCCTTT-----TSSCTTCCEE
T ss_pred             CCEEEccCCCCCccCCCCC-CCCCEEECcCCCCC-eeCHHHhcCCCCCCEEECCCCccCeeChhh-----hcCCCCCCEE
Confidence            3445555555554444332 34555555555544 223222345555555555555555555442     3445555555


Q ss_pred             eecCCcCcccch-hhhCcCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCcccccccCCcccchhhhhcCCCCCEE
Q 037941          119 SFRNSHIEQLPE-EIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEVEGQNNASLAELNQLSRLTTL  197 (308)
Q Consensus       119 ~l~~~~i~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L  197 (308)
                      ++++|.++.+|. .+..+++|+.|++++|. ++.++...+..+++|+.|++++|.+...+.       ..+..+++|+.|
T Consensus        91 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-------~~~~~l~~L~~L  162 (270)
T 2o6q_A           91 WVTDNKLQALPIGVFDQLVNLAELRLDRNQ-LKSLPPRVFDSLTKLTYLSLGYNELQSLPK-------GVFDKLTSLKEL  162 (270)
T ss_dssp             ECCSSCCCCCCTTTTTTCSSCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCT-------TTTTTCTTCCEE
T ss_pred             ECCCCcCCcCCHhHcccccCCCEEECCCCc-cCeeCHHHhCcCcCCCEEECCCCcCCccCH-------hHccCCccccee
Confidence            555555554442 23445555555555554 444444334555555555555555442111       224445555555


Q ss_pred             EeeeccCccccchhhc--cCCceeEeeccCccc----ccCCCCcCceEEEeecC
Q 037941          198 EMLILDAQVMPRELFS--LGLERNKIFLGDVWS----WTGKYETSRTLKLKLDN  245 (308)
Q Consensus       198 ~l~~~~~~~~p~~~~~--~~L~~l~i~~~~~~~----~~~~~~~L~~L~L~~~~  245 (308)
                      ++++|.++.+|...+.  ++|+.|++..+.+..    .+..+++|+.|+|+.|.
T Consensus       163 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~  216 (270)
T 2o6q_A          163 RLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENP  216 (270)
T ss_dssp             ECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             EecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCC
Confidence            5555555555443222  455555554443322    23456677777777765

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.86  E-value=1.2e-20  Score=175.96  Aligned_cols=139  Identities=17%  Similarity=0.216  Sum_probs=108.3

Q ss_pred             eecccchhhHhhhhcCCCCeeEEeecCCCCCCCC-cC-CCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCC
Q 037941           21 IQIISDLREVFEDLMQKDPIAISHPCRDIQELPE-KL-ECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPS   98 (308)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~   98 (308)
                      -+.+.++..+|. ...+++++|++++|.+..+++ .+ .+++|++|++++|.+++..|.. |.++++|++|++++|.++.
T Consensus        37 ~ls~~~L~~ip~-~~~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-~~~l~~L~~L~Ls~N~l~~  114 (562)
T 3a79_B           37 DYSNRNLTHVPK-DLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHV-FLFNQDLEYLDVSHNRLQN  114 (562)
T ss_dssp             ECTTSCCCSCCT-TSCTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTT-TTTCTTCCEEECTTSCCCE
T ss_pred             EcCCCCCccCCC-CCCCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHH-hCCCCCCCEEECCCCcCCc
Confidence            344667777774 346889999999999988775 44 8999999999999988544444 4789999999999999998


Q ss_pred             CCCCCCCcccccccccccEEeecCCcCcccc--hhhhCcCCCCEEecCCCCCCCccCcchhcCCCCC--ceEEccCCcc
Q 037941           99 LPSTLGDVATVGVLKKLVIFSFRNSHIEQLP--EEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRL--EELYMGNSFT  173 (308)
Q Consensus        99 lp~~~~~~~~l~~l~~L~~L~l~~~~i~~l~--~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L--~~L~l~~~~~  173 (308)
                      +|..        .+++|++|++++|.++.++  ..++++++|+.|++++|. ++...   +..+++|  +.|++++|.+
T Consensus       115 lp~~--------~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~-l~~~~---~~~l~~L~L~~L~L~~n~l  181 (562)
T 3a79_B          115 ISCC--------PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAK-FRQLD---LLPVAHLHLSCILLDLVSY  181 (562)
T ss_dssp             ECSC--------CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSB-CCTTT---TGGGTTSCEEEEEEEESSC
T ss_pred             cCcc--------ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCc-cccCc---hhhhhhceeeEEEeecccc
Confidence            8873        6889999999999988654  778999999999999987 44432   3444555  8888888776

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.86  E-value=1.1e-20  Score=176.31  Aligned_cols=82  Identities=20%  Similarity=0.207  Sum_probs=50.3

Q ss_pred             hcCCCCeeEEeecCCCCCCCC-cC-CCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCC--CCCCCcccc
Q 037941           34 LMQKDPIAISHPCRDIQELPE-KL-ECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLP--STLGDVATV  109 (308)
Q Consensus        34 ~~~~~l~~L~l~~~~~~~~~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp--~~~~~~~~l  109 (308)
                      ...+++++|++++|.+..+++ .+ .+++|++|++++|.++ .+|..   .+++|++|++++|.+..+|  ..      +
T Consensus        73 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~---~l~~L~~L~Ls~N~l~~l~~p~~------~  142 (562)
T 3a79_B           73 SFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC---PMASLRHLDLSFNDFDVLPVCKE------F  142 (562)
T ss_dssp             TTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC---CCTTCSEEECCSSCCSBCCCCGG------G
T ss_pred             ccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc---ccccCCEEECCCCCccccCchHh------h
Confidence            346677777777777766533 33 6777777777777765 45543   5666777777777666543  33      4


Q ss_pred             cccccccEEeecCCcC
Q 037941          110 GVLKKLVIFSFRNSHI  125 (308)
Q Consensus       110 ~~l~~L~~L~l~~~~i  125 (308)
                      +.+++|++|++++|.+
T Consensus       143 ~~l~~L~~L~L~~n~l  158 (562)
T 3a79_B          143 GNLTKLTFLGLSAAKF  158 (562)
T ss_dssp             GGCTTCCEEEEECSBC
T ss_pred             cccCcccEEecCCCcc
Confidence            5555555555555543

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.86  E-value=3.2e-20  Score=168.59  Aligned_cols=243  Identities=14%  Similarity=0.104  Sum_probs=192.5

Q ss_pred             ccchhhHhhhhcCCCCeeEEeecCCCCCCCCcCCCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCCCC
Q 037941           24 ISDLREVFEDLMQKDPIAISHPCRDIQELPEKLECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTL  103 (308)
Q Consensus        24 ~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~  103 (308)
                      +..+..+|.....+++++|++++|.+..+| ...+++|++|++++|.+++ ++   +.++++|++|++++|.++.+|   
T Consensus        51 ~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N~l~~-~~---~~~l~~L~~L~L~~N~l~~l~---  122 (457)
T 3bz5_A           51 NSSITDMTGIEKLTGLTKLICTSNNITTLD-LSQNTNLTYLACDSNKLTN-LD---VTPLTKLTYLNCDTNKLTKLD---  122 (457)
T ss_dssp             SSCCCCCTTGGGCTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSC-CC---CTTCTTCCEEECCSSCCSCCC---
T ss_pred             CCCcccChhhcccCCCCEEEccCCcCCeEc-cccCCCCCEEECcCCCCce-ee---cCCCCcCCEEECCCCcCCeec---
Confidence            445555665567899999999999998886 4499999999999999885 33   478999999999999999874   


Q ss_pred             CCcccccccccccEEeecCCcCcccchhhhCcCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCcccccccCCccc
Q 037941          104 GDVATVGVLKKLVIFSFRNSHIEQLPEEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEVEGQNNA  183 (308)
Q Consensus       104 ~~~~~l~~l~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~  183 (308)
                           ++.+++|++|++++|.++.++  ++.+++|+.|++++|..++.++   ++.+++|+.|++++|.+.+        
T Consensus       123 -----~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~~---~~~l~~L~~L~ls~n~l~~--------  184 (457)
T 3bz5_A          123 -----VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKLD---VTPQTQLTTLDCSFNKITE--------  184 (457)
T ss_dssp             -----CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCCC---CTTCTTCCEEECCSSCCCC--------
T ss_pred             -----CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCcccccc---cccCCcCCEEECCCCccce--------
Confidence                 568999999999999999875  8899999999999997677774   6789999999999999882        


Q ss_pred             chhhhhcCCCCCEEEeeeccCccccchhhccCCceeEeeccCcccc-cCCCCcCceEEEeecCchhhhhhHHHHhcccce
Q 037941          184 SLAELNQLSRLTTLEMLILDAQVMPRELFSLGLERNKIFLGDVWSW-TGKYETSRTLKLKLDNRMYLEHGIKMLLRRTED  262 (308)
Q Consensus       184 ~~~~l~~l~~L~~L~l~~~~~~~~p~~~~~~~L~~l~i~~~~~~~~-~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~  262 (308)
                      .  .+..+++|+.|++++|.++.++ ....++|+.|++..+.+... ...+++|+.|+++.|.....+  .. .+++|+.
T Consensus       185 l--~l~~l~~L~~L~l~~N~l~~~~-l~~l~~L~~L~Ls~N~l~~ip~~~l~~L~~L~l~~N~l~~~~--~~-~l~~L~~  258 (457)
T 3bz5_A          185 L--DVSQNKLLNRLNCDTNNITKLD-LNQNIQLTFLDCSSNKLTEIDVTPLTQLTYFDCSVNPLTELD--VS-TLSKLTT  258 (457)
T ss_dssp             C--CCTTCTTCCEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCCCCTTCTTCSEEECCSSCCSCCC--CT-TCTTCCE
T ss_pred             e--ccccCCCCCEEECcCCcCCeec-cccCCCCCEEECcCCcccccCccccCCCCEEEeeCCcCCCcC--HH-HCCCCCE
Confidence            1  2678899999999999988874 22238999999987765442 567889999999998765543  21 2355555


Q ss_pred             e----------ecCCccchhhhhhccCCCCCCcccEEecccccccccccc
Q 037941          263 L----------HLDKLNGLQNVLHELDGEGFPRLKHLLVQNASEILYIVS  302 (308)
Q Consensus       263 L----------~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~  302 (308)
                      |          +++++.....    ++.+.+++|+.|++++|+.+..+|.
T Consensus       259 L~l~~n~L~~L~l~~n~~~~~----~~~~~l~~L~~L~Ls~n~~l~~l~~  304 (457)
T 3bz5_A          259 LHCIQTDLLEIDLTHNTQLIY----FQAEGCRKIKELDVTHNTQLYLLDC  304 (457)
T ss_dssp             EECTTCCCSCCCCTTCTTCCE----EECTTCTTCCCCCCTTCTTCCEEEC
T ss_pred             EeccCCCCCEEECCCCccCCc----ccccccccCCEEECCCCcccceecc
Confidence            5          4444433332    3346789999999999999999884

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.86  E-value=1.1e-20  Score=171.63  Aligned_cols=153  Identities=16%  Similarity=0.197  Sum_probs=118.9

Q ss_pred             eeEEeecCCCCCCCCcCCCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCC-CCCCCCCCcccccccccccEE
Q 037941           40 IAISHPCRDIQELPEKLECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFP-SLPSTLGDVATVGVLKKLVIF  118 (308)
Q Consensus        40 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~lp~~~~~~~~l~~l~~L~~L  118 (308)
                      +.++..++.+..+|.  -.+++++|++++|.+++..+..+ .++++|++|++++|.+. .+|+..     +..+++|++|
T Consensus        13 ~~~~c~~~~l~~lp~--l~~~l~~L~Ls~n~i~~~~~~~~-~~l~~L~~L~L~~n~~~~~i~~~~-----~~~l~~L~~L   84 (455)
T 3v47_A           13 YNAICINRGLHQVPE--LPAHVNYVDLSLNSIAELNETSF-SRLQDLQFLKVEQQTPGLVIRNNT-----FRGLSSLIIL   84 (455)
T ss_dssp             TEEECCSSCCSSCCC--CCTTCCEEECCSSCCCEECTTTT-SSCTTCCEEECCCCSTTCEECTTT-----TTTCTTCCEE
T ss_pred             cccCcCCCCcccCCC--CCCccCEEEecCCccCcCChhHh-ccCccccEEECcCCcccceECccc-----ccccccCCEE
Confidence            356777778888887  34899999999999985545554 79999999999999987 665543     8999999999


Q ss_pred             eecCCcCccc-chhhhCcCCCCEEecCCCCCCCccC-cchhcCCCCCceEEccCCcccccccCCcccchhhhhcCCCCCE
Q 037941          119 SFRNSHIEQL-PEEIGQLTRLKLLDLSTCSKLKSIR-PNVISNLPRLEELYMGNSFTHWEVEGQNNASLAELNQLSRLTT  196 (308)
Q Consensus       119 ~l~~~~i~~l-~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~  196 (308)
                      ++++|.++.+ |..++.+++|++|++++|...+..+ ...++.+++|++|++++|.+.+..+.      ..+..+++|++
T Consensus        85 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~------~~~~~l~~L~~  158 (455)
T 3v47_A           85 KLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPA------SFFLNMRRFHV  158 (455)
T ss_dssp             ECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCC------GGGGGCTTCCE
T ss_pred             eCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcc------cccCCCCcccE
Confidence            9999999955 7789999999999999998333233 23478899999999999998844321      12566677777


Q ss_pred             EEeeeccCcc
Q 037941          197 LEMLILDAQV  206 (308)
Q Consensus       197 L~l~~~~~~~  206 (308)
                      |++++|.+..
T Consensus       159 L~L~~n~l~~  168 (455)
T 3v47_A          159 LDLTFNKVKS  168 (455)
T ss_dssp             EECTTCCBSC
T ss_pred             EeCCCCcccc
Confidence            7776665443

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.85  E-value=1.9e-20  Score=178.32  Aligned_cols=250  Identities=17%  Similarity=0.140  Sum_probs=122.7

Q ss_pred             CCCeeEEeecCCCCCCCCcC--CCCCccEEEecCCCCcC-CCCchhhcC--CCCccEEEccCCCCCCCCCCCCCcccccc
Q 037941           37 KDPIAISHPCRDIQELPEKL--ECPKLKLFFLFSEKLSL-VIPDLFFEG--VPSLQVLSLNGFHFPSLPSTLGDVATVGV  111 (308)
Q Consensus        37 ~~l~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~-~~~~~~~~~--l~~L~~L~l~~~~~~~lp~~~~~~~~l~~  111 (308)
                      +++++|++++|.+..+++..  .+++|++|++++|.+.. .++...|..  ...|++|++++|.+..+++..     +..
T Consensus       329 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~-----~~~  403 (680)
T 1ziw_A          329 KCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDA-----FSW  403 (680)
T ss_dssp             TTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTT-----TTT
T ss_pred             CCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhh-----hhC
Confidence            44455555555444333322  44555555554443211 111111111  134444444455554332221     556


Q ss_pred             cccccEEeecCCcCc-ccc-hhhhCcCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCcccccccCCcccchhhhh
Q 037941          112 LKKLVIFSFRNSHIE-QLP-EEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEVEGQNNASLAELN  189 (308)
Q Consensus       112 l~~L~~L~l~~~~i~-~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~  189 (308)
                      +++|++|++++|.+. .+| ..+..+++|+.|++++|. +..++...+..+++|+.|++++|.+...     ...+..+.
T Consensus       404 l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~L~~L~l~~n~l~~~-----~~~p~~~~  477 (680)
T 1ziw_A          404 LGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNK-YLQLTRNSFALVPSLQRLMLRRVALKNV-----DSSPSPFQ  477 (680)
T ss_dssp             CTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCS-EEECCTTTTTTCTTCCEEECTTSCCBCT-----TCSSCTTT
T ss_pred             CCCCCEEeCCCCcCccccCcccccCcccccEEecCCCC-cceeChhhhhcCcccccchhcccccccc-----ccCCcccc
Confidence            666666666666665 344 445666666666666665 3333333355555555555555544311     12234556


Q ss_pred             cCCCCCEEEeeeccCccccchhhc--cCCceeEeeccCcccc------------cCCCCcCceEEEeecCchhhhhhHHH
Q 037941          190 QLSRLTTLEMLILDAQVMPRELFS--LGLERNKIFLGDVWSW------------TGKYETSRTLKLKLDNRMYLEHGIKM  255 (308)
Q Consensus       190 ~l~~L~~L~l~~~~~~~~p~~~~~--~~L~~l~i~~~~~~~~------------~~~~~~L~~L~L~~~~~~~~~~~~~~  255 (308)
                      .+++|+.|++++|.++.+|...+.  .+|+.|++..+.+...            +..++.|+.|+|+.|.....+.....
T Consensus       478 ~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~  557 (680)
T 1ziw_A          478 PLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFK  557 (680)
T ss_dssp             TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred             cCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcc
Confidence            666677777776666666654332  6666666655543221            34456666666666654443333222


Q ss_pred             HhcccceeecCCccchhhhhhccCCCCCCcccEEecccccccccc
Q 037941          256 LLRRTEDLHLDKLNGLQNVLHELDGEGFPRLKHLLVQNASEILYI  300 (308)
Q Consensus       256 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i  300 (308)
                      -+++|+.|++++ +.++.++... ...+++|+.|++++| ++..+
T Consensus       558 ~l~~L~~L~Ls~-N~l~~l~~~~-~~~l~~L~~L~L~~N-~l~~~  599 (680)
T 1ziw_A          558 DLFELKIIDLGL-NNLNTLPASV-FNNQVSLKSLNLQKN-LITSV  599 (680)
T ss_dssp             TCTTCCEEECCS-SCCCCCCTTT-TTTCTTCCEEECTTS-CCCBC
T ss_pred             cccCcceeECCC-CCCCcCCHhH-hCCCCCCCEEECCCC-cCCcc
Confidence            235666666655 4444433221 234455555555555 44433

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.85  E-value=3.4e-20  Score=173.75  Aligned_cols=226  Identities=19%  Similarity=0.166  Sum_probs=178.3

Q ss_pred             CCCCeeEEeecCCCCCCCCcCCCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCCCCCCcccccccccc
Q 037941           36 QKDPIAISHPCRDIQELPEKLECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKKL  115 (308)
Q Consensus        36 ~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~~~~l~~l~~L  115 (308)
                      ..+++.|+++++.+..+|.... ++|++|++++|.++ .+|.    .+++|++|++++|.++.+|..         +++|
T Consensus        39 ~~~l~~L~ls~n~L~~lp~~l~-~~L~~L~L~~N~l~-~lp~----~l~~L~~L~Ls~N~l~~lp~~---------l~~L  103 (622)
T 3g06_A           39 NNGNAVLNVGESGLTTLPDCLP-AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTSLPVL---------PPGL  103 (622)
T ss_dssp             HHCCCEEECCSSCCSCCCSCCC-TTCSEEEECSCCCS-CCCC----CCTTCCEEEECSCCCSCCCCC---------CTTC
T ss_pred             CCCCcEEEecCCCcCccChhhC-CCCcEEEecCCCCC-CCCC----cCCCCCEEEcCCCcCCcCCCC---------CCCC
Confidence            3468999999999999988665 89999999999987 5665    579999999999999998885         6899


Q ss_pred             cEEeecCCcCcccchhhhCcCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCcccccccCCcccchhhhhcC----
Q 037941          116 VIFSFRNSHIEQLPEEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEVEGQNNASLAELNQL----  191 (308)
Q Consensus       116 ~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l----  191 (308)
                      ++|++++|.++.+|.   .+++|+.|++++|. ++.+|..    +++|++|++++|.+.+.+.     .+..+..+    
T Consensus       104 ~~L~Ls~N~l~~l~~---~l~~L~~L~L~~N~-l~~lp~~----l~~L~~L~Ls~N~l~~l~~-----~~~~L~~L~L~~  170 (622)
T 3g06_A          104 LELSIFSNPLTHLPA---LPSGLCKLWIFGNQ-LTSLPVL----PPGLQELSVSDNQLASLPA-----LPSELCKLWAYN  170 (622)
T ss_dssp             CEEEECSCCCCCCCC---CCTTCCEEECCSSC-CSCCCCC----CTTCCEEECCSSCCSCCCC-----CCTTCCEEECCS
T ss_pred             CEEECcCCcCCCCCC---CCCCcCEEECCCCC-CCcCCCC----CCCCCEEECcCCcCCCcCC-----ccCCCCEEECCC
Confidence            999999999999888   67899999999998 7888864    4899999999998885322     12223222    


Q ss_pred             ----------CCCCEEEeeeccCccccchhhccCCceeEeeccCcccccCCCCcCceEEEeecCchhhhhhHHHHhcccc
Q 037941          192 ----------SRLTTLEMLILDAQVMPRELFSLGLERNKIFLGDVWSWTGKYETSRTLKLKLDNRMYLEHGIKMLLRRTE  261 (308)
Q Consensus       192 ----------~~L~~L~l~~~~~~~~p~~~~~~~L~~l~i~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~  261 (308)
                                ++|+.|++++|.++.+|..  ..+|+.|.+..+.+......+++|+.|+|+.|.....+    ..+++|+
T Consensus       171 N~l~~l~~~~~~L~~L~Ls~N~l~~l~~~--~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~L~~lp----~~l~~L~  244 (622)
T 3g06_A          171 NQLTSLPMLPSGLQELSVSDNQLASLPTL--PSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLP----VLPSELK  244 (622)
T ss_dssp             SCCSCCCCCCTTCCEEECCSSCCSCCCCC--CTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSCCC----CCCTTCC
T ss_pred             CCCCCCcccCCCCcEEECCCCCCCCCCCc--cchhhEEECcCCcccccCCCCCCCCEEEccCCccCcCC----CCCCcCc
Confidence                      6788888888877777754  36778887777776666666788889998888665433    3348899


Q ss_pred             eeecCCccchhhhhhccCCCCCCcccEEecccccccccccc
Q 037941          262 DLHLDKLNGLQNVLHELDGEGFPRLKHLLVQNASEILYIVS  302 (308)
Q Consensus       262 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~  302 (308)
                      +|++++ +.++.++.     .+++|+.|++++| ++..+|.
T Consensus       245 ~L~Ls~-N~L~~lp~-----~~~~L~~L~Ls~N-~L~~lp~  278 (622)
T 3g06_A          245 ELMVSG-NRLTSLPM-----LPSGLLSLSVYRN-QLTRLPE  278 (622)
T ss_dssp             EEECCS-SCCSCCCC-----CCTTCCEEECCSS-CCCSCCG
T ss_pred             EEECCC-CCCCcCCc-----ccccCcEEeCCCC-CCCcCCH
Confidence            999988 56665432     5688999999998 7778774

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.85  E-value=1.4e-20  Score=170.30  Aligned_cols=242  Identities=16%  Similarity=0.212  Sum_probs=195.4

Q ss_pred             CCeeEEeecCCCCCCCCcCCCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCCCCCCcccccccccccE
Q 037941           38 DPIAISHPCRDIQELPEKLECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKKLVI  117 (308)
Q Consensus        38 ~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~~~~l~~l~~L~~  117 (308)
                      ..+.++..+..+..+|.... ++++.|++++|.++...+ ..|.++++|++|++++|.+..++...     +..+++|++
T Consensus        44 ~~~~v~c~~~~l~~iP~~~~-~~l~~L~L~~n~i~~~~~-~~~~~l~~L~~L~Ls~n~i~~i~~~~-----~~~l~~L~~  116 (440)
T 3zyj_A           44 QFSKVICVRKNLREVPDGIS-TNTRLLNLHENQIQIIKV-NSFKHLRHLEILQLSRNHIRTIEIGA-----FNGLANLNT  116 (440)
T ss_dssp             TSCEEECCSCCCSSCCSCCC-TTCSEEECCSCCCCEECT-TTTSSCSSCCEEECCSSCCCEECGGG-----GTTCSSCCE
T ss_pred             CCCEEEeCCCCcCcCCCCCC-CCCcEEEccCCcCCeeCH-HHhhCCCCCCEEECCCCcCCccChhh-----ccCCccCCE
Confidence            34567777888888887663 789999999999885444 44589999999999999999877553     899999999


Q ss_pred             EeecCCcCcccch-hhhCcCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCcccccccCCcccchhhhhcCCCCCE
Q 037941          118 FSFRNSHIEQLPE-EIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEVEGQNNASLAELNQLSRLTT  196 (308)
Q Consensus       118 L~l~~~~i~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~  196 (308)
                      |++++|.++.+|. .+..+++|+.|++++|. ++.++...+..+++|+.|++++|......+      ...+..+++|+.
T Consensus       117 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~------~~~~~~l~~L~~  189 (440)
T 3zyj_A          117 LELFDNRLTTIPNGAFVYLSKLKELWLRNNP-IESIPSYAFNRIPSLRRLDLGELKRLSYIS------EGAFEGLSNLRY  189 (440)
T ss_dssp             EECCSSCCSSCCTTTSCSCSSCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEEC------TTTTTTCSSCCE
T ss_pred             EECCCCcCCeeCHhHhhccccCceeeCCCCc-ccccCHHHhhhCcccCEeCCCCCCCcceeC------cchhhcccccCe
Confidence            9999999998875 58899999999999998 788887778999999999999865332111      246788999999


Q ss_pred             EEeeeccCccccchhhccCCceeEeeccCccc----ccCCCCcCceEEEeecCchhhhhhHHHHhcccceeecCCccchh
Q 037941          197 LEMLILDAQVMPRELFSLGLERNKIFLGDVWS----WTGKYETSRTLKLKLDNRMYLEHGIKMLLRRTEDLHLDKLNGLQ  272 (308)
Q Consensus       197 L~l~~~~~~~~p~~~~~~~L~~l~i~~~~~~~----~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  272 (308)
                      |++++|.++.+|......+|+.|++..+.+..    .+..+++|+.|+|+.|...........-+++|++|++++ +.++
T Consensus       190 L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-N~l~  268 (440)
T 3zyj_A          190 LNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAH-NNLT  268 (440)
T ss_dssp             EECTTSCCSSCCCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTT-SCCC
T ss_pred             ecCCCCcCccccccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCC-CCCC
Confidence            99999999999975555999999998776543    467889999999999876655443333359999999998 6777


Q ss_pred             hhhhccCCCCCCcccEEeccccc
Q 037941          273 NVLHELDGEGFPRLKHLLVQNAS  295 (308)
Q Consensus       273 ~~~~~~~~~~~~~L~~L~l~~c~  295 (308)
                      .++... ...+++|+.|++.++|
T Consensus       269 ~~~~~~-~~~l~~L~~L~L~~Np  290 (440)
T 3zyj_A          269 LLPHDL-FTPLHHLERIHLHHNP  290 (440)
T ss_dssp             CCCTTT-TSSCTTCCEEECCSSC
T ss_pred             ccChhH-hccccCCCEEEcCCCC
Confidence            655433 3668999999999875

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.85  E-value=1.5e-20  Score=173.61  Aligned_cols=154  Identities=14%  Similarity=0.093  Sum_probs=99.5

Q ss_pred             hCcCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCcccccccCCcccchhhhhcCCCCCEEEeeeccCcc-ccchh
Q 037941          133 GQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEVEGQNNASLAELNQLSRLTTLEMLILDAQV-MPREL  211 (308)
Q Consensus       133 ~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~p~~~  211 (308)
                      ..+++|+.|++++|...+..|.. ++.+++|+.|++++|.+.+.     ...+..++.+++|+.|++++|.+.. +|...
T Consensus       321 ~~l~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~L~~N~l~~l-----~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~  394 (520)
T 2z7x_B          321 SKISPFLHLDFSNNLLTDTVFEN-CGHLTELETLILQMNQLKEL-----SKIAEMTTQMKSLQQLDISQNSVSYDEKKGD  394 (520)
T ss_dssp             SSCCCCCEEECCSSCCCTTTTTT-CCCCSSCCEEECCSSCCCBH-----HHHHHHHTTCTTCCEEECCSSCCBCCGGGCS
T ss_pred             hhCCcccEEEeECCccChhhhhh-hccCCCCCEEEccCCccCcc-----ccchHHHhhCCCCCEEECCCCcCCcccccch
Confidence            45566677777776633334444 56677777777777766621     1223457778888888888887776 77653


Q ss_pred             hc--cCCceeEeeccCccc-ccCCC-CcCceEEEeecCchhhhhhHHHHhcccceeecCCccchhhhhhccCCCCCCccc
Q 037941          212 FS--LGLERNKIFLGDVWS-WTGKY-ETSRTLKLKLDNRMYLEHGIKMLLRRTEDLHLDKLNGLQNVLHELDGEGFPRLK  287 (308)
Q Consensus       212 ~~--~~L~~l~i~~~~~~~-~~~~~-~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~  287 (308)
                      +.  ++|+.|++..+.+.. .+..+ ++|+.|+|+.|.....+..+.. +++|++|++++ +.++.++.. ....+++|+
T Consensus       395 ~~~l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~l~~ip~~~~~-l~~L~~L~L~~-N~l~~l~~~-~~~~l~~L~  471 (520)
T 2z7x_B          395 CSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKSIPKQVVK-LEALQELNVAS-NQLKSVPDG-IFDRLTSLQ  471 (520)
T ss_dssp             CCCCTTCCEEECCSSCCCGGGGGSCCTTCCEEECCSSCCCCCCGGGGG-CTTCCEEECCS-SCCCCCCTT-TTTTCTTCC
T ss_pred             hccCccCCEEECcCCCCCcchhhhhcccCCEEECCCCcccccchhhhc-CCCCCEEECCC-CcCCccCHH-HhccCCccc
Confidence            33  778888777666533 22233 5788888888776655555554 48888888887 455655443 135677888


Q ss_pred             EEeccccc
Q 037941          288 HLLVQNAS  295 (308)
Q Consensus       288 ~L~l~~c~  295 (308)
                      .|++++|+
T Consensus       472 ~L~l~~N~  479 (520)
T 2z7x_B          472 KIWLHTNP  479 (520)
T ss_dssp             EEECCSSC
T ss_pred             EEECcCCC
Confidence            88888774

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.85  E-value=1.7e-20  Score=159.31  Aligned_cols=213  Identities=17%  Similarity=0.209  Sum_probs=162.9

Q ss_pred             ecccchhhHhhhhcCCCCeeEEeecCCCCCCCC-cC-CCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCC
Q 037941           22 QIISDLREVFEDLMQKDPIAISHPCRDIQELPE-KL-ECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSL   99 (308)
Q Consensus        22 ~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l   99 (308)
                      +.+.++.++|. ...+++++|++++|.+..+++ .+ .+++|++|++++|.++ .++...+.++++|++|++++|.+..+
T Consensus        14 c~~~~l~~ip~-~l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~   91 (276)
T 2z62_A           14 CMELNFYKIPD-NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSL   91 (276)
T ss_dssp             CTTSCCSSCCS-SSCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCEE
T ss_pred             ecCCCccccCC-CCCCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCC-ccCHHHccCCcCCCEEECCCCccCcc
Confidence            44566677774 346789999999999987766 34 8999999999999887 44444457899999999999999977


Q ss_pred             CCCCCCcccccccccccEEeecCCcCcccch-hhhCcCCCCEEecCCCCCCCc--cCcchhcCCCCCceEEccCCccccc
Q 037941          100 PSTLGDVATVGVLKKLVIFSFRNSHIEQLPE-EIGQLTRLKLLDLSTCSKLKS--IRPNVISNLPRLEELYMGNSFTHWE  176 (308)
Q Consensus       100 p~~~~~~~~l~~l~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~l~~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~  176 (308)
                      +...     +..+++|++|++++|.++.++. .++.+++|+.|++++|. ++.  +|.. ++.+++|++|++++|.+.+.
T Consensus        92 ~~~~-----~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~l~~~-~~~l~~L~~L~Ls~N~l~~~  164 (276)
T 2z62_A           92 ALGA-----FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEY-FSNLTNLEHLDLSSNKIQSI  164 (276)
T ss_dssp             CTTT-----TTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSC-CCCCCCCGG-GGGCTTCCEEECCSSCCCEE
T ss_pred             Chhh-----hcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCc-cceecCchh-hccCCCCCEEECCCCCCCcC
Confidence            6543     8889999999999999887765 58899999999999998 555  4655 88899999999999988843


Q ss_pred             ccCCcccchhhhhcCCCCC-EEEeeeccCccccchhhc-cCCceeEeeccCcccc----cCCCCcCceEEEeecCch
Q 037941          177 VEGQNNASLAELNQLSRLT-TLEMLILDAQVMPRELFS-LGLERNKIFLGDVWSW----TGKYETSRTLKLKLDNRM  247 (308)
Q Consensus       177 ~~~~~~~~~~~l~~l~~L~-~L~l~~~~~~~~p~~~~~-~~L~~l~i~~~~~~~~----~~~~~~L~~L~L~~~~~~  247 (308)
                      .+    .....+..++.+. .|++++|.++.++...+. .+|+.|++..+.+...    +..+++|+.|+|+.|...
T Consensus       165 ~~----~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~  237 (276)
T 2z62_A          165 YC----TDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD  237 (276)
T ss_dssp             CG----GGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred             CH----HHhhhhhhccccceeeecCCCcccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCccc
Confidence            32    2334445555555 899999998888776655 6788888876654332    456778888888877544

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.85  E-value=7.7e-20  Score=154.80  Aligned_cols=189  Identities=22%  Similarity=0.327  Sum_probs=160.7

Q ss_pred             ecccchhhHhhhhcCCCCeeEEeecCCCCCCCCc-C-CCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCC
Q 037941           22 QIISDLREVFEDLMQKDPIAISHPCRDIQELPEK-L-ECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSL   99 (308)
Q Consensus        22 ~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l   99 (308)
                      +.+..+..+|. ...+++++|++++|.+..+++. + .+++|++|++++|.++ .++...|.++++|++|++++|.+..+
T Consensus        23 ~~~~~l~~ip~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l~~n~l~~~  100 (270)
T 2o6q_A           23 CSSKKLTAIPS-NIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQAL  100 (270)
T ss_dssp             CTTSCCSSCCS-CCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCS-CCCTTTTSSCTTCCEEECCSSCCCCC
T ss_pred             ccCCCCCccCC-CCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccC-eeChhhhcCCCCCCEEECCCCcCCcC
Confidence            44667777773 3467899999999999888763 4 8999999999999987 66777778899999999999999999


Q ss_pred             CCCCCCcccccccccccEEeecCCcCcccch-hhhCcCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCccccccc
Q 037941          100 PSTLGDVATVGVLKKLVIFSFRNSHIEQLPE-EIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEVE  178 (308)
Q Consensus       100 p~~~~~~~~l~~l~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~  178 (308)
                      |...     +..+++|++|++++|.++.++. .+..+++|+.|++++|. ++.+|...+..+++|+.|++++|.+...++
T Consensus       101 ~~~~-----~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  174 (270)
T 2o6q_A          101 PIGV-----FDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNE-LQSLPKGVFDKLTSLKELRLYNNQLKRVPE  174 (270)
T ss_dssp             CTTT-----TTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred             CHhH-----cccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCc-CCccCHhHccCCcccceeEecCCcCcEeCh
Confidence            8765     7899999999999999997764 57899999999999998 788888778899999999999999884332


Q ss_pred             CCcccchhhhhcCCCCCEEEeeeccCccccchhhc--cCCceeEeeccC
Q 037941          179 GQNNASLAELNQLSRLTTLEMLILDAQVMPRELFS--LGLERNKIFLGD  225 (308)
Q Consensus       179 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~~~~--~~L~~l~i~~~~  225 (308)
                             ..+..+++|+.|++++|.++.+|...+.  ++|+.+++..+.
T Consensus       175 -------~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~  216 (270)
T 2o6q_A          175 -------GAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENP  216 (270)
T ss_dssp             -------TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             -------hHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCC
Confidence                   4577899999999999999999887544  889999887665

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.85  E-value=3.5e-20  Score=158.51  Aligned_cols=194  Identities=18%  Similarity=0.168  Sum_probs=127.4

Q ss_pred             CCCCeeEEeecCCCCCCCCcCCCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCCCCCCcccccccccc
Q 037941           36 QKDPIAISHPCRDIQELPEKLECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKKL  115 (308)
Q Consensus        36 ~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~~~~l~~l~~L  115 (308)
                      .++++.++++++.+..+|..+. ++++.|++++|.++...+. .+..+++|++|++++|.++.+|.       .+.+++|
T Consensus         9 l~~l~~l~~~~~~l~~ip~~~~-~~l~~L~L~~N~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~-------~~~l~~L   79 (290)
T 1p9a_G            9 VASHLEVNCDKRNLTALPPDLP-KDTTILHLSENLLYTFSLA-TLMPYTRLTQLNLDRAELTKLQV-------DGTLPVL   79 (290)
T ss_dssp             STTCCEEECTTSCCSSCCSCCC-TTCCEEECTTSCCSEEEGG-GGTTCTTCCEEECTTSCCCEEEC-------CSCCTTC
T ss_pred             cCCccEEECCCCCCCcCCCCCC-CCCCEEEcCCCcCCccCHH-HhhcCCCCCEEECCCCccCcccC-------CCCCCcC
Confidence            5567777777777776665543 5677777777776633333 34567777777777777776655       3456777


Q ss_pred             cEEeecCCcCcccchhhhCcCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCcccccccCCcccchhhhhcCCCCC
Q 037941          116 VIFSFRNSHIEQLPEEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEVEGQNNASLAELNQLSRLT  195 (308)
Q Consensus       116 ~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~  195 (308)
                      ++|++++|.++.+|..+..+++|+.|++++|. ++.++.+.+..+++|+.|++++|.+...++       ..+..+++|+
T Consensus        80 ~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~-------~~~~~l~~L~  151 (290)
T 1p9a_G           80 GTLDLSHNQLQSLPLLGQTLPALTVLDVSFNR-LTSLPLGALRGLGELQELYLKGNELKTLPP-------GLLTPTPKLE  151 (290)
T ss_dssp             CEEECCSSCCSSCCCCTTTCTTCCEEECCSSC-CCCCCSSTTTTCTTCCEEECTTSCCCCCCT-------TTTTTCTTCC
T ss_pred             CEEECCCCcCCcCchhhccCCCCCEEECCCCc-CcccCHHHHcCCCCCCEEECCCCCCCccCh-------hhcccccCCC
Confidence            77777777777777667777777777777776 566665556777777777777777663322       3455667777


Q ss_pred             EEEeeeccCccccchhhc--cCCceeEeeccCccc---ccCCCCcCceEEEeecCc
Q 037941          196 TLEMLILDAQVMPRELFS--LGLERNKIFLGDVWS---WTGKYETSRTLKLKLDNR  246 (308)
Q Consensus       196 ~L~l~~~~~~~~p~~~~~--~~L~~l~i~~~~~~~---~~~~~~~L~~L~L~~~~~  246 (308)
                      .|++++|.++.+|...+.  ++|+.|++..+.+..   .......|+.++|+.|..
T Consensus       152 ~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~  207 (290)
T 1p9a_G          152 KLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPW  207 (290)
T ss_dssp             EEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCB
T ss_pred             EEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCc
Confidence            777777777777766543  667777766555433   334455677777777653

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.85  E-value=1.5e-20  Score=175.34  Aligned_cols=146  Identities=23%  Similarity=0.249  Sum_probs=116.0

Q ss_pred             ccchhhHhhh--hcCCCCeeEEeecCCCCCCCCc-C-CCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCC
Q 037941           24 ISDLREVFED--LMQKDPIAISHPCRDIQELPEK-L-ECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSL   99 (308)
Q Consensus        24 ~~~~~~~~~~--~~~~~l~~L~l~~~~~~~~~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l   99 (308)
                      ++.+..++..  ...+++++|++++|.+..+++. + .+++|++|++++|.++. ++...|.++++|++|++++|.+..+
T Consensus        37 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~l  115 (570)
T 2z63_A           37 FNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS-LALGAFSGLSSLQKLVAVETNLASL  115 (570)
T ss_dssp             SCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCE-ECTTTTTTCTTCCEEECTTSCCCCS
T ss_pred             CCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCc-cCHhhhcCccccccccccccccccC
Confidence            3444444422  4578999999999999877654 4 89999999999999874 4444458999999999999999998


Q ss_pred             CCCCCCcccccccccccEEeecCCcCcc--cchhhhCcCCCCEEecCCCCCCCccCcchhcCCCCC----ceEEccCCcc
Q 037941          100 PSTLGDVATVGVLKKLVIFSFRNSHIEQ--LPEEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRL----EELYMGNSFT  173 (308)
Q Consensus       100 p~~~~~~~~l~~l~~L~~L~l~~~~i~~--l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L----~~L~l~~~~~  173 (308)
                      |...     ++.+++|++|++++|.++.  +|..++++++|++|++++|. ++.++...++.+.+|    +.+++++|.+
T Consensus       116 ~~~~-----~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~~~~~L~l~~n~l  189 (570)
T 2z63_A          116 ENFP-----IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRVLHQMPLLNLSLDLSLNPM  189 (570)
T ss_dssp             TTCS-----CTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSC-CCEECGGGGHHHHTCTTCCCEEECTTCCC
T ss_pred             CCcc-----ccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCc-cceecHHHccchhccchhhhhcccCCCCc
Confidence            8743     8899999999999999884  78889999999999999998 666655446666666    6777777766


Q ss_pred             ccc
Q 037941          174 HWE  176 (308)
Q Consensus       174 ~~~  176 (308)
                      .+.
T Consensus       190 ~~~  192 (570)
T 2z63_A          190 NFI  192 (570)
T ss_dssp             CEE
T ss_pred             eec
Confidence            543

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.84  E-value=3.2e-20  Score=157.56  Aligned_cols=212  Identities=18%  Similarity=0.148  Sum_probs=153.7

Q ss_pred             EEeecCCCCCCCCcCCCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCCCCCCcccccccccccEEeec
Q 037941           42 ISHPCRDIQELPEKLECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKKLVIFSFR  121 (308)
Q Consensus        42 L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~~~~l~~l~~L~~L~l~  121 (308)
                      ++-.+..+..+|.... +++++|++++|.++. ++...+.++++|++|++++|.+..++...     +..+++|++|+++
T Consensus        12 ~~c~~~~l~~ip~~l~-~~l~~L~ls~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-----~~~l~~L~~L~L~   84 (276)
T 2z62_A           12 YQCMELNFYKIPDNLP-FSTKNLDLSFNPLRH-LGSYSFFSFPELQVLDLSRCEIQTIEDGA-----YQSLSHLSTLILT   84 (276)
T ss_dssp             EECTTSCCSSCCSSSC-TTCCEEECTTCCCCE-ECTTTTTTCTTCSEEECTTCCCCEECTTT-----TTTCTTCCEEECT
T ss_pred             EEecCCCccccCCCCC-CCccEEECCCCcccc-cCHhHhccccCCcEEECCCCcCCccCHHH-----ccCCcCCCEEECC
Confidence            4444555677776552 589999999999884 44434578999999999999999887743     8899999999999


Q ss_pred             CCcCcccc-hhhhCcCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCcccccccCCcccchhhhhcCCCCCEEEee
Q 037941          122 NSHIEQLP-EEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEVEGQNNASLAELNQLSRLTTLEML  200 (308)
Q Consensus       122 ~~~i~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~  200 (308)
                      +|.++.++ ..+..+++|+.|++++|. +..++...++.+++|++|++++|.+...      ..+..+..+++|++|+++
T Consensus        85 ~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~------~l~~~~~~l~~L~~L~Ls  157 (276)
T 2z62_A           85 GNPIQSLALGAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSF------KLPEYFSNLTNLEHLDLS  157 (276)
T ss_dssp             TCCCCEECTTTTTTCTTCCEEECTTSC-CCCSTTCCCTTCTTCCEEECCSSCCCCC------CCCGGGGGCTTCCEEECC
T ss_pred             CCccCccChhhhcCCccccEEECCCCC-ccccCchhcccCCCCCEEECcCCcccee------cCchhhccCCCCCEEECC
Confidence            99999666 668999999999999998 6666664488999999999999998732      134678899999999999


Q ss_pred             eccCccccchhhc--cCCc----eeEeeccCcccc---cCCCCcCceEEEeecCchhhhhhHHHHhcccceeecCC
Q 037941          201 ILDAQVMPRELFS--LGLE----RNKIFLGDVWSW---TGKYETSRTLKLKLDNRMYLEHGIKMLLRRTEDLHLDK  267 (308)
Q Consensus       201 ~~~~~~~p~~~~~--~~L~----~l~i~~~~~~~~---~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~  267 (308)
                      +|.++.++.....  .+|+    .+++..+.+...   .....+|+.|+|+.|.....+.....-+++|++|++++
T Consensus       158 ~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~  233 (276)
T 2z62_A          158 SNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHT  233 (276)
T ss_dssp             SSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCS
T ss_pred             CCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccC
Confidence            9998887654332  5555    455554443322   11223566666666654443333322236666666664

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.84  E-value=2.8e-22  Score=173.40  Aligned_cols=238  Identities=15%  Similarity=0.178  Sum_probs=172.4

Q ss_pred             CCCCeeEEeecCCCCCCCCcC-CCCCccEEEecCCCCc-CCCCchhh------cCCCCccEEEccCCCCC-CCCCCCCCc
Q 037941           36 QKDPIAISHPCRDIQELPEKL-ECPKLKLFFLFSEKLS-LVIPDLFF------EGVPSLQVLSLNGFHFP-SLPSTLGDV  106 (308)
Q Consensus        36 ~~~l~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~-~~~~~~~~------~~l~~L~~L~l~~~~~~-~lp~~~~~~  106 (308)
                      .++++.+++.+|.+ .+|... ..  ++.|++++|.+. ..++..+.      .++++|++|++++|.+. .+|..    
T Consensus        42 ~~~L~~l~l~~n~l-~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~----  114 (312)
T 1wwl_A           42 GRSLEYLLKRVDTE-ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPP----  114 (312)
T ss_dssp             EEECTTHHHHCCTT-CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCC----
T ss_pred             CCCceeEeeccccc-ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHH----
Confidence            44577777788877 666644 32  888888888773 34554431      15888999999998887 67776    


Q ss_pred             ccc--cccccccEEeecCCcCcccchhhhCc-----CCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCcccccccC
Q 037941          107 ATV--GVLKKLVIFSFRNSHIEQLPEEIGQL-----TRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEVEG  179 (308)
Q Consensus       107 ~~l--~~l~~L~~L~l~~~~i~~l~~~~~~l-----~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~  179 (308)
                        +  ..+++|++|++++|.++.+|..++.+     ++|+.|++++|. ++.++...++.+++|++|++++|.+.+..  
T Consensus       115 --~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~--  189 (312)
T 1wwl_A          115 --LLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAH-SLNFSCEQVRVFPALSTLDLSDNPELGER--  189 (312)
T ss_dssp             --SSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCS-CCCCCTTTCCCCSSCCEEECCSCTTCHHH--
T ss_pred             --HHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCC-CccchHHHhccCCCCCEEECCCCCcCcch--
Confidence              4  78888999999999888777777766     889999999888 66666545888889999999988865211  


Q ss_pred             Ccccchhhh--hcCCCCCEEEeeeccCccccc---hhhc--cCCceeEeeccCccc-----ccCCCCcCceEEEeecCch
Q 037941          180 QNNASLAEL--NQLSRLTTLEMLILDAQVMPR---ELFS--LGLERNKIFLGDVWS-----WTGKYETSRTLKLKLDNRM  247 (308)
Q Consensus       180 ~~~~~~~~l--~~l~~L~~L~l~~~~~~~~p~---~~~~--~~L~~l~i~~~~~~~-----~~~~~~~L~~L~L~~~~~~  247 (308)
                         ..+..+  ..+++|++|++++|.++.++.   .++.  ++|+.|++..+.+..     ....+++|+.|+|+.|...
T Consensus       190 ---~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~  266 (312)
T 1wwl_A          190 ---GLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK  266 (312)
T ss_dssp             ---HHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS
T ss_pred             ---HHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC
Confidence               112333  678889999999888875443   3322  688888887776544     2344689999999998766


Q ss_pred             hhhhhHHHHhcccceeecCCccchhhhhhccCCCCCCcccEEeccccc
Q 037941          248 YLEHGIKMLLRRTEDLHLDKLNGLQNVLHELDGEGFPRLKHLLVQNAS  295 (308)
Q Consensus       248 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~  295 (308)
                      ..+..+.   ++|++|++++ +.++.++ .  ...+++|+.|++.+++
T Consensus       267 ~ip~~~~---~~L~~L~Ls~-N~l~~~p-~--~~~l~~L~~L~L~~N~  307 (312)
T 1wwl_A          267 QVPKGLP---AKLSVLDLSY-NRLDRNP-S--PDELPQVGNLSLKGNP  307 (312)
T ss_dssp             SCCSSCC---SEEEEEECCS-SCCCSCC-C--TTTSCEEEEEECTTCT
T ss_pred             hhhhhcc---CCceEEECCC-CCCCCCh-h--HhhCCCCCEEeccCCC
Confidence            5444332   7999999998 6777653 2  3678999999999983

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.84  E-value=1.7e-21  Score=168.88  Aligned_cols=232  Identities=13%  Similarity=0.099  Sum_probs=180.2

Q ss_pred             CeeEEeecCCCCCCCCcC--CCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCCCCCCccccccccccc
Q 037941           39 PIAISHPCRDIQELPEKL--ECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKKLV  116 (308)
Q Consensus        39 l~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~~~~l~~l~~L~  116 (308)
                      ++..+++.+.+...+...  .+++|++|++++|.++.. +...+.++++|++|++++|.+..+++       +..+++|+
T Consensus        12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~-------~~~l~~L~   83 (317)
T 3o53_A           12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQI-SAADLAPFTKLELLNLSSNVLYETLD-------LESLSTLR   83 (317)
T ss_dssp             EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCC-CHHHHTTCTTCCEEECTTSCCEEEEE-------ETTCTTCC
T ss_pred             eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcC-CHHHhhCCCcCCEEECCCCcCCcchh-------hhhcCCCC
Confidence            444555555553333333  677999999999999854 44445899999999999999987665       78899999


Q ss_pred             EEeecCCcCcccchhhhCcCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCcccccccCCcccchhhhhcCCCCCE
Q 037941          117 IFSFRNSHIEQLPEEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEVEGQNNASLAELNQLSRLTT  196 (308)
Q Consensus       117 ~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~  196 (308)
                      +|++++|.++.++.    .++|+.|++++|. ++.++..   .+++|+.|++++|.+.+..+       ..+..+++|+.
T Consensus        84 ~L~Ls~n~l~~l~~----~~~L~~L~l~~n~-l~~~~~~---~~~~L~~L~l~~N~l~~~~~-------~~~~~l~~L~~  148 (317)
T 3o53_A           84 TLDLNNNYVQELLV----GPSIETLHAANNN-ISRVSCS---RGQGKKNIYLANNKITMLRD-------LDEGCRSRVQY  148 (317)
T ss_dssp             EEECCSSEEEEEEE----CTTCCEEECCSSC-CSEEEEC---CCSSCEEEECCSSCCCSGGG-------BCTGGGSSEEE
T ss_pred             EEECcCCccccccC----CCCcCEEECCCCc-cCCcCcc---ccCCCCEEECCCCCCCCccc-------hhhhccCCCCE
Confidence            99999999987764    3899999999998 6766653   47899999999999884322       46678899999


Q ss_pred             EEeeeccCccccchhh---ccCCceeEeeccCccccc--CCCCcCceEEEeecCchhhhhhHHHHhcccceeecCCccch
Q 037941          197 LEMLILDAQVMPRELF---SLGLERNKIFLGDVWSWT--GKYETSRTLKLKLDNRMYLEHGIKMLLRRTEDLHLDKLNGL  271 (308)
Q Consensus       197 L~l~~~~~~~~p~~~~---~~~L~~l~i~~~~~~~~~--~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  271 (308)
                      |++++|.++.++....   .++|+.|++..+.+....  ..+++|+.|+|+.|........+..+ ++|++|++++ +.+
T Consensus       149 L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l-~~L~~L~L~~-N~l  226 (317)
T 3o53_A          149 LDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSA-AGVTWISLRN-NKL  226 (317)
T ss_dssp             EECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEECCSSCCCEECGGGGGG-TTCSEEECTT-SCC
T ss_pred             EECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccccccccccCCEEECCCCcCCcchhhhccc-CcccEEECcC-Ccc
Confidence            9999999888654433   289999999888765542  34889999999999877665555554 9999999998 566


Q ss_pred             hhhhhccCCCCCCcccEEeccccccc
Q 037941          272 QNVLHELDGEGFPRLKHLLVQNASEI  297 (308)
Q Consensus       272 ~~~~~~~~~~~~~~L~~L~l~~c~~l  297 (308)
                      +.++..+  ..+++|+.|++++|+--
T Consensus       227 ~~l~~~~--~~l~~L~~L~l~~N~~~  250 (317)
T 3o53_A          227 VLIEKAL--RFSQNLEHFDLRGNGFH  250 (317)
T ss_dssp             CEECTTC--CCCTTCCEEECTTCCCB
T ss_pred             cchhhHh--hcCCCCCEEEccCCCcc
Confidence            7655433  67899999999998543

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.84  E-value=7.1e-20  Score=158.00  Aligned_cols=191  Identities=15%  Similarity=0.150  Sum_probs=162.1

Q ss_pred             cCCCCeeEEeecCCCCCCCCcCCCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCCCCCCccccccccc
Q 037941           35 MQKDPIAISHPCRDIQELPEKLECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKK  114 (308)
Q Consensus        35 ~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~~~~l~~l~~  114 (308)
                      .++++++|++.++.+..++....+++|++|++++|.++. ++.  +..+++|++|++++|.+..+|.       +..+++
T Consensus        39 ~l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~-~~~--~~~l~~L~~L~L~~n~l~~~~~-------~~~l~~  108 (308)
T 1h6u_A           39 DLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITD-LAP--LKNLTKITELELSGNPLKNVSA-------IAGLQS  108 (308)
T ss_dssp             HHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCC-CGG--GTTCCSCCEEECCSCCCSCCGG-------GTTCTT
T ss_pred             HcCCcCEEEeeCCCccCchhhhccCCCCEEEccCCcCCC-Chh--HccCCCCCEEEccCCcCCCchh-------hcCCCC
Confidence            477899999999999988865599999999999999874 444  5799999999999999998864       889999


Q ss_pred             ccEEeecCCcCcccchhhhCcCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCcccccccCCcccchhhhhcCCCC
Q 037941          115 LVIFSFRNSHIEQLPEEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEVEGQNNASLAELNQLSRL  194 (308)
Q Consensus       115 L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L  194 (308)
                      |++|++++|.++.++. +..+++|+.|++++|. ++.++.  ++.+++|+.|++++|.+.+         ...+..+++|
T Consensus       109 L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~--l~~l~~L~~L~l~~n~l~~---------~~~l~~l~~L  175 (308)
T 1h6u_A          109 IKTLDLTSTQITDVTP-LAGLSNLQVLYLDLNQ-ITNISP--LAGLTNLQYLSIGNAQVSD---------LTPLANLSKL  175 (308)
T ss_dssp             CCEEECTTSCCCCCGG-GTTCTTCCEEECCSSC-CCCCGG--GGGCTTCCEEECCSSCCCC---------CGGGTTCTTC
T ss_pred             CCEEECCCCCCCCchh-hcCCCCCCEEECCCCc-cCcCcc--ccCCCCccEEEccCCcCCC---------ChhhcCCCCC
Confidence            9999999999998886 8999999999999998 777776  7899999999999999882         1237889999


Q ss_pred             CEEEeeeccCccccchhhccCCceeEeeccCcccc--cCCCCcCceEEEeecCchh
Q 037941          195 TTLEMLILDAQVMPRELFSLGLERNKIFLGDVWSW--TGKYETSRTLKLKLDNRMY  248 (308)
Q Consensus       195 ~~L~l~~~~~~~~p~~~~~~~L~~l~i~~~~~~~~--~~~~~~L~~L~L~~~~~~~  248 (308)
                      +.|++++|.++.++.....++|+.|++..+.+...  ...+++|+.|+|+.|....
T Consensus       176 ~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~l~~N~i~~  231 (308)
T 1h6u_A          176 TTLKADDNKISDISPLASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTNQTITN  231 (308)
T ss_dssp             CEEECCSSCCCCCGGGGGCTTCCEEECTTSCCCBCGGGTTCTTCCEEEEEEEEEEC
T ss_pred             CEEECCCCccCcChhhcCCCCCCEEEccCCccCccccccCCCCCCEEEccCCeeec
Confidence            99999999999888744448899999887765443  5677889999998876543

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.84  E-value=2.8e-20  Score=157.68  Aligned_cols=174  Identities=22%  Similarity=0.285  Sum_probs=141.8

Q ss_pred             hcCCCCeeEEeecCCCCCCCCcCCCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCCCCCCcccccccc
Q 037941           34 LMQKDPIAISHPCRDIQELPEKLECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLK  113 (308)
Q Consensus        34 ~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~~~~l~~l~  113 (308)
                      ...++++.|++.++.+..++....+++|++|++++|.+++ ++ . +..+++|++|++++|.+..+|+..     +..++
T Consensus        38 ~~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~-~~-~-l~~l~~L~~L~L~~n~l~~~~~~~-----~~~l~  109 (272)
T 3rfs_A           38 NELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHD-IS-A-LKELTNLTYLILTGNQLQSLPNGV-----FDKLT  109 (272)
T ss_dssp             HHHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCC-CG-G-GTTCTTCCEEECTTSCCCCCCTTT-----TTTCT
T ss_pred             ccccceeeeeeCCCCcccccccccCCCCcEEECCCCCCCC-ch-h-hcCCCCCCEEECCCCccCccChhH-----hcCCc
Confidence            3478899999999999888876699999999999999874 33 3 478999999999999999888764     78999


Q ss_pred             cccEEeecCCcCcccchh-hhCcCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCcccccccCCcccchhhhhcCC
Q 037941          114 KLVIFSFRNSHIEQLPEE-IGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEVEGQNNASLAELNQLS  192 (308)
Q Consensus       114 ~L~~L~l~~~~i~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~  192 (308)
                      +|++|++++|.++.++.. ++.+++|+.|++++|. ++.++...++.+++|+.|++++|.+.+..+       ..+..++
T Consensus       110 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-------~~~~~l~  181 (272)
T 3rfs_A          110 NLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQ-LQSLPKGVFDKLTNLTELDLSYNQLQSLPE-------GVFDKLT  181 (272)
T ss_dssp             TCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCT-------TTTTTCT
T ss_pred             CCCEEECCCCcCCccCHHHhccCCCCCEEECCCCc-cCccCHHHhccCccCCEEECCCCCcCccCH-------HHhcCCc
Confidence            999999999999977654 7889999999999998 778887767899999999999999883332       4567889


Q ss_pred             CCCEEEeeeccCccccchhhc--cCCceeEeec
Q 037941          193 RLTTLEMLILDAQVMPRELFS--LGLERNKIFL  223 (308)
Q Consensus       193 ~L~~L~l~~~~~~~~p~~~~~--~~L~~l~i~~  223 (308)
                      +|+.|++++|.++.++.....  ++|+.|++..
T Consensus       182 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~  214 (272)
T 3rfs_A          182 QLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHD  214 (272)
T ss_dssp             TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred             cCCEEECCCCcCCccCHHHHhCCcCCCEEEccC
Confidence            999999999988776654321  4444444443

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.83  E-value=2e-19  Score=163.26  Aligned_cols=95  Identities=18%  Similarity=0.312  Sum_probs=55.5

Q ss_pred             CCeeEEeecCCCCCCCCcCCCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCCCCCCcccccccccccE
Q 037941           38 DPIAISHPCRDIQELPEKLECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKKLVI  117 (308)
Q Consensus        38 ~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~~~~l~~l~~L~~  117 (308)
                      ++++|++++|.+..++..  .++|++|++++|.+++ +|.  +.++++|++|++++|.+..+|..      +   .+|++
T Consensus       112 ~L~~L~l~~n~l~~l~~~--~~~L~~L~L~~n~l~~-lp~--~~~l~~L~~L~l~~N~l~~lp~~------~---~~L~~  177 (454)
T 1jl5_A          112 SLKSLLVDNNNLKALSDL--PPLLEYLGVSNNQLEK-LPE--LQNSSFLKIIDVDNNSLKKLPDL------P---PSLEF  177 (454)
T ss_dssp             TCCEEECCSSCCSCCCSC--CTTCCEEECCSSCCSS-CCC--CTTCTTCCEEECCSSCCSCCCCC------C---TTCCE
T ss_pred             CCcEEECCCCccCcccCC--CCCCCEEECcCCCCCC-Ccc--cCCCCCCCEEECCCCcCcccCCC------c---ccccE
Confidence            344444444444333321  1578888888887774 663  46788888888888887777764      1   25555


Q ss_pred             EeecCCcCcccchhhhCcCCCCEEecCCCC
Q 037941          118 FSFRNSHIEQLPEEIGQLTRLKLLDLSTCS  147 (308)
Q Consensus       118 L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~  147 (308)
                      |++++|.++.+| .++.+++|+.|++++|.
T Consensus       178 L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~  206 (454)
T 1jl5_A          178 IAAGNNQLEELP-ELQNLPFLTAIYADNNS  206 (454)
T ss_dssp             EECCSSCCSSCC-CCTTCTTCCEEECCSSC
T ss_pred             EECcCCcCCcCc-cccCCCCCCEEECCCCc
Confidence            555555555554 24555555555555544

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.83  E-value=6e-20  Score=157.05  Aligned_cols=187  Identities=21%  Similarity=0.206  Sum_probs=159.9

Q ss_pred             ecccchhhHhhhhcCCCCeeEEeecCCCCCCCC-cC-CCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCC
Q 037941           22 QIISDLREVFEDLMQKDPIAISHPCRDIQELPE-KL-ECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSL   99 (308)
Q Consensus        22 ~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l   99 (308)
                      +.+.++..+|. ...+++++|++++|.+..+++ .+ .+++|++|++++|.++. ++..  ..+++|++|++++|.+..+
T Consensus        17 ~~~~~l~~ip~-~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~--~~l~~L~~L~Ls~N~l~~l   92 (290)
T 1p9a_G           17 CDKRNLTALPP-DLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQVD--GTLPVLGTLDLSHNQLQSL   92 (290)
T ss_dssp             CTTSCCSSCCS-CCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EECC--SCCTTCCEEECCSSCCSSC
T ss_pred             CCCCCCCcCCC-CCCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCc-ccCC--CCCCcCCEEECCCCcCCcC
Confidence            44667777773 346899999999999977754 34 99999999999999874 3332  6899999999999999999


Q ss_pred             CCCCCCcccccccccccEEeecCCcCcccc-hhhhCcCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCccccccc
Q 037941          100 PSTLGDVATVGVLKKLVIFSFRNSHIEQLP-EEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEVE  178 (308)
Q Consensus       100 p~~~~~~~~l~~l~~L~~L~l~~~~i~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~  178 (308)
                      |..      +..+++|++|++++|.++.+| ..+..+++|+.|++++|. ++.+|.+.+..+++|+.|++++|.+...+.
T Consensus        93 ~~~------~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~  165 (290)
T 1p9a_G           93 PLL------GQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE-LKTLPPGLLTPTPKLEKLSLANNNLTELPA  165 (290)
T ss_dssp             CCC------TTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSCCSCCCT
T ss_pred             chh------hccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCC-CCccChhhcccccCCCEEECCCCcCCccCH
Confidence            998      889999999999999999887 568999999999999998 788888878899999999999999883332


Q ss_pred             CCcccchhhhhcCCCCCEEEeeeccCccccchhhc-cCCceeEeeccCc
Q 037941          179 GQNNASLAELNQLSRLTTLEMLILDAQVMPRELFS-LGLERNKIFLGDV  226 (308)
Q Consensus       179 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~~~~-~~L~~l~i~~~~~  226 (308)
                             ..+..+++|+.|++++|.++.+|..++. .+|+.+.+..+..
T Consensus       166 -------~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~  207 (290)
T 1p9a_G          166 -------GLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPW  207 (290)
T ss_dssp             -------TTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCB
T ss_pred             -------HHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCc
Confidence                   4567899999999999999999998877 8899998876653

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.83  E-value=1.8e-21  Score=178.27  Aligned_cols=232  Identities=14%  Similarity=0.079  Sum_probs=162.1

Q ss_pred             CCCCeeEEeecCCCCCCCC-cC-CCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCCCCCCcccccccc
Q 037941           36 QKDPIAISHPCRDIQELPE-KL-ECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLK  113 (308)
Q Consensus        36 ~~~l~~L~l~~~~~~~~~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~~~~l~~l~  113 (308)
                      .+++++|++++|.+..+++ .+ .+++|++|++++|.+++..+   +..+++|++|++++|.+..+|.          .+
T Consensus        33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~l~~l~~----------~~   99 (487)
T 3oja_A           33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD---LESLSTLRTLDLNNNYVQELLV----------GP   99 (487)
T ss_dssp             GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE---CTTCTTCCEEECCSSEEEEEEE----------CT
T ss_pred             CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc---cccCCCCCEEEecCCcCCCCCC----------CC
Confidence            4489999999999987764 44 89999999999999875444   5789999999999998876554          37


Q ss_pred             cccEEeecCCcCcccchhhhCcCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCcccccccCCcccchhhhh-cCC
Q 037941          114 KLVIFSFRNSHIEQLPEEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEVEGQNNASLAELN-QLS  192 (308)
Q Consensus       114 ~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~-~l~  192 (308)
                      +|++|++++|.++.++.  ..+++|+.|++++|. ++.++...++.+++|+.|++++|.+.+..       +..+. .++
T Consensus       100 ~L~~L~L~~N~l~~~~~--~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-------~~~l~~~l~  169 (487)
T 3oja_A          100 SIETLHAANNNISRVSC--SRGQGKKNIYLANNK-ITMLRDLDEGCRSRVQYLDLKLNEIDTVN-------FAELAASSD  169 (487)
T ss_dssp             TCCEEECCSSCCCCEEE--CCCSSCEEEECCSSC-CCSGGGBCGGGGSSEEEEECTTSCCCEEE-------GGGGGGGTT
T ss_pred             CcCEEECcCCcCCCCCc--cccCCCCEEECCCCC-CCCCCchhhcCCCCCCEEECCCCCCCCcC-------hHHHhhhCC
Confidence            78888888888886665  246788888888887 55554434777888888888888877432       23443 678


Q ss_pred             CCCEEEeeeccCccccchhhccCCceeEeeccCccc---ccCCCCcCceEEEeecCchhhhhhHHHHhcccceeecCCcc
Q 037941          193 RLTTLEMLILDAQVMPRELFSLGLERNKIFLGDVWS---WTGKYETSRTLKLKLDNRMYLEHGIKMLLRRTEDLHLDKLN  269 (308)
Q Consensus       193 ~L~~L~l~~~~~~~~p~~~~~~~L~~l~i~~~~~~~---~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~  269 (308)
                      +|+.|++++|.++.+|.....++|+.|++..+.+..   .+..+++|+.|+|+.|.....+..+.. +++|+.|++++++
T Consensus       170 ~L~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~-l~~L~~L~l~~N~  248 (487)
T 3oja_A          170 TLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRF-SQNLEHFDLRGNG  248 (487)
T ss_dssp             TCCEEECTTSCCCEEECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCC-CTTCCEEECTTCC
T ss_pred             cccEEecCCCccccccccccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcccchhhcc-CCCCCEEEcCCCC
Confidence            888888888888777766656777777776665433   244567777777777765554444333 3777777777744


Q ss_pred             chhhhhhccCCCCCCcccEEecc
Q 037941          270 GLQNVLHELDGEGFPRLKHLLVQ  292 (308)
Q Consensus       270 ~~~~~~~~~~~~~~~~L~~L~l~  292 (308)
                      ......+.+ ...++.|+.+.+.
T Consensus       249 l~c~~~~~~-~~~l~~L~~l~~~  270 (487)
T 3oja_A          249 FHCGTLRDF-FSKNQRVQTVAKQ  270 (487)
T ss_dssp             BCHHHHHHH-HTTCHHHHHHHHH
T ss_pred             CcCcchHHH-HHhCCCCcEEecc
Confidence            331222212 2445556655553

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.83  E-value=2.1e-19  Score=163.05  Aligned_cols=197  Identities=20%  Similarity=0.211  Sum_probs=134.0

Q ss_pred             ccchhhHhhhhcCCCCeeEEeecCCCCCCCCcCCCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCCCC
Q 037941           24 ISDLREVFEDLMQKDPIAISHPCRDIQELPEKLECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTL  103 (308)
Q Consensus        24 ~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~  103 (308)
                      +.++..+|.  ..+++++|++++|.+..+|..  .++|++|++++|.+++ ++.    ..++|++|++++|.+..+| . 
T Consensus        80 ~~~l~~lp~--~~~~L~~L~l~~n~l~~lp~~--~~~L~~L~l~~n~l~~-l~~----~~~~L~~L~L~~n~l~~lp-~-  148 (454)
T 1jl5_A           80 NLGLSSLPE--LPPHLESLVASCNSLTELPEL--PQSLKSLLVDNNNLKA-LSD----LPPLLEYLGVSNNQLEKLP-E-  148 (454)
T ss_dssp             TSCCSCCCS--CCTTCSEEECCSSCCSSCCCC--CTTCCEEECCSSCCSC-CCS----CCTTCCEEECCSSCCSSCC-C-
T ss_pred             CCccccCCC--CcCCCCEEEccCCcCCccccc--cCCCcEEECCCCccCc-ccC----CCCCCCEEECcCCCCCCCc-c-
Confidence            455666664  357899999999988777753  4789999999988763 332    1268999999999988888 4 


Q ss_pred             CCcccccccccccEEeecCCcCcccchhhhCcCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCcccccccC----
Q 037941          104 GDVATVGVLKKLVIFSFRNSHIEQLPEEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEVEG----  179 (308)
Q Consensus       104 ~~~~~l~~l~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~----  179 (308)
                           ++.+++|++|++++|.++.+|..+   .+|+.|++++|. ++.+|.  ++.+++|++|++++|.+.+.+..    
T Consensus       149 -----~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~n~-l~~l~~--~~~l~~L~~L~l~~N~l~~l~~~~~~L  217 (454)
T 1jl5_A          149 -----LQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNNQ-LEELPE--LQNLPFLTAIYADNNSLKKLPDLPLSL  217 (454)
T ss_dssp             -----CTTCTTCCEEECCSSCCSCCCCCC---TTCCEEECCSSC-CSSCCC--CTTCTTCCEEECCSSCCSSCCCCCTTC
T ss_pred             -----cCCCCCCCEEECCCCcCcccCCCc---ccccEEECcCCc-CCcCcc--ccCCCCCCEEECCCCcCCcCCCCcCcc
Confidence                 788899999999999888877643   589999999987 667773  78888888888888887743221    


Q ss_pred             --------CcccchhhhhcCCCCCEEEeeeccCccccchhhccCCceeEeeccCcccccCCCCcCceEEEeecC
Q 037941          180 --------QNNASLAELNQLSRLTTLEMLILDAQVMPRELFSLGLERNKIFLGDVWSWTGKYETSRTLKLKLDN  245 (308)
Q Consensus       180 --------~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~~~~~~L~~l~i~~~~~~~~~~~~~~L~~L~L~~~~  245 (308)
                              ..... ..+..+++|+.|++++|.++.+|..  ..+|+.|++..+.+......+++|+.|+++.|.
T Consensus       218 ~~L~l~~n~l~~l-p~~~~l~~L~~L~l~~N~l~~l~~~--~~~L~~L~l~~N~l~~l~~~~~~L~~L~ls~N~  288 (454)
T 1jl5_A          218 ESIVAGNNILEEL-PELQNLPFLTTIYADNNLLKTLPDL--PPSLEALNVRDNYLTDLPELPQSLTFLDVSENI  288 (454)
T ss_dssp             CEEECCSSCCSSC-CCCTTCTTCCEEECCSSCCSSCCSC--CTTCCEEECCSSCCSCCCCCCTTCCEEECCSSC
T ss_pred             cEEECcCCcCCcc-cccCCCCCCCEEECCCCcCCccccc--ccccCEEECCCCcccccCcccCcCCEEECcCCc
Confidence                    00111 1355566666666666666655543  255566655555444333334455555555543

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.83  E-value=3.7e-20  Score=153.88  Aligned_cols=204  Identities=11%  Similarity=0.166  Sum_probs=136.9

Q ss_pred             hhhHhhhhcCCCCeeEEeecCCCCCCCCc-C-CCCCccEEEecCCC-CcCCCCchhhcCCCCccEEEccC-CCCCCCCCC
Q 037941           27 LREVFEDLMQKDPIAISHPCRDIQELPEK-L-ECPKLKLFFLFSEK-LSLVIPDLFFEGVPSLQVLSLNG-FHFPSLPST  102 (308)
Q Consensus        27 ~~~~~~~~~~~~l~~L~l~~~~~~~~~~~-~-~~~~L~~L~l~~~~-~~~~~~~~~~~~l~~L~~L~l~~-~~~~~lp~~  102 (308)
                      +.++|.  ...++++|++++|.+..+++. + .+++|++|++++|. ++ .++...|.++++|++|++++ |.+..+|..
T Consensus        23 l~~ip~--~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~-~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~   99 (239)
T 2xwt_C           23 IQRIPS--LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQ-QLESHSFYNLSKVTHIEIRNTRNLTYIDPD   99 (239)
T ss_dssp             CSSCCC--CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCC-EECTTTEESCTTCCEEEEEEETTCCEECTT
T ss_pred             ccccCC--CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcc-eeCHhHcCCCcCCcEEECCCCCCeeEcCHH
Confidence            666665  566788888888888777663 3 78888888888886 54 45554457788888888887 778777654


Q ss_pred             CCCcccccccccccEEeecCCcCcccchhhhCcCCCC---EEecCCCCCCCccCcchhcCCCCCc-eEEccCCccccccc
Q 037941          103 LGDVATVGVLKKLVIFSFRNSHIEQLPEEIGQLTRLK---LLDLSTCSKLKSIRPNVISNLPRLE-ELYMGNSFTHWEVE  178 (308)
Q Consensus       103 ~~~~~~l~~l~~L~~L~l~~~~i~~l~~~~~~l~~L~---~L~l~~~~~~~~~~~~~~~~l~~L~-~L~l~~~~~~~~~~  178 (308)
                      .     +..+++|++|++++|.++.+|. +..+++|+   .|++++|..++.++...+..+++|+ .|++++|.+...+.
T Consensus       100 ~-----f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~  173 (239)
T 2xwt_C          100 A-----LKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQG  173 (239)
T ss_dssp             S-----EECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECT
T ss_pred             H-----hCCCCCCCEEeCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCH
Confidence            3     7778888888888888877776 77777777   8888887237777766677778888 88888777762221


Q ss_pred             CCcccchhhhhcCCCCCEEEeeecc-CccccchhhccCCceeEeeccCcccccCCC-CcCceEEEeecCchhhhhhHHHH
Q 037941          179 GQNNASLAELNQLSRLTTLEMLILD-AQVMPRELFSLGLERNKIFLGDVWSWTGKY-ETSRTLKLKLDNRMYLEHGIKML  256 (308)
Q Consensus       179 ~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~p~~~~~~~L~~l~i~~~~~~~~~~~~-~~L~~L~L~~~~~~~~~~~~~~~  256 (308)
                             ..+.. ++|+.|++++|. ++.+|...                  +..+ ++|+.|+++.|.....+..   .
T Consensus       174 -------~~~~~-~~L~~L~L~~n~~l~~i~~~~------------------~~~l~~~L~~L~l~~N~l~~l~~~---~  224 (239)
T 2xwt_C          174 -------YAFNG-TKLDAVYLNKNKYLTVIDKDA------------------FGGVYSGPSLLDVSQTSVTALPSK---G  224 (239)
T ss_dssp             -------TTTTT-CEEEEEECTTCTTCCEECTTT------------------TTTCSBCCSEEECTTCCCCCCCCT---T
T ss_pred             -------hhcCC-CCCCEEEcCCCCCcccCCHHH------------------hhccccCCcEEECCCCccccCChh---H
Confidence                   22333 677777777773 65554432                  2334 5566666666554433322   2


Q ss_pred             hcccceeecCCc
Q 037941          257 LRRTEDLHLDKL  268 (308)
Q Consensus       257 ~~~L~~L~l~~~  268 (308)
                      |++|+.|.+.++
T Consensus       225 ~~~L~~L~l~~~  236 (239)
T 2xwt_C          225 LEHLKELIARNT  236 (239)
T ss_dssp             CTTCSEEECTTC
T ss_pred             hccCceeeccCc
Confidence            467777777654

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.83  E-value=3e-20  Score=154.42  Aligned_cols=214  Identities=17%  Similarity=0.246  Sum_probs=159.3

Q ss_pred             EEeecCCCCCCCCcCCCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCC-CCCCCCCCCCcccccccccccEEee
Q 037941           42 ISHPCRDIQELPEKLECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFH-FPSLPSTLGDVATVGVLKKLVIFSF  120 (308)
Q Consensus        42 L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~lp~~~~~~~~l~~l~~L~~L~l  120 (308)
                      +.+.+..+..+|.  -.+++++|++++|.++ .++...|.++++|++|++++|. ++.+|+..     +..+++|++|++
T Consensus        16 ~~v~c~~l~~ip~--~~~~l~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~-----f~~l~~L~~L~l   87 (239)
T 2xwt_C           16 FRVTCKDIQRIPS--LPPSTQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHS-----FYNLSKVTHIEI   87 (239)
T ss_dssp             TEEEECSCSSCCC--CCTTCCEEEEESCCCS-EECTTTTTTCTTCCEEEEECCSSCCEECTTT-----EESCTTCCEEEE
T ss_pred             ceeEccCccccCC--CCCcccEEEEeCCcce-EECHHHccCCCCCcEEeCCCCCCcceeCHhH-----cCCCcCCcEEEC
Confidence            3444555777887  3448999999999988 4555455789999999999997 88888753     889999999999


Q ss_pred             cC-CcCcccc-hhhhCcCCCCEEecCCCCCCCccCcchhcCCCCCc---eEEccCC-cccccccCCcccchhhhhcCCCC
Q 037941          121 RN-SHIEQLP-EEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLE---ELYMGNS-FTHWEVEGQNNASLAELNQLSRL  194 (308)
Q Consensus       121 ~~-~~i~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~---~L~l~~~-~~~~~~~~~~~~~~~~l~~l~~L  194 (308)
                      ++ |.++.++ ..+..+++|+.|++++|. ++.+|.  +..+++|+   .|++++| .+...++       ..+..+++|
T Consensus        88 ~~~n~l~~i~~~~f~~l~~L~~L~l~~n~-l~~lp~--~~~l~~L~~L~~L~l~~N~~l~~i~~-------~~~~~l~~L  157 (239)
T 2xwt_C           88 RNTRNLTYIDPDALKELPLLKFLGIFNTG-LKMFPD--LTKVYSTDIFFILEITDNPYMTSIPV-------NAFQGLCNE  157 (239)
T ss_dssp             EEETTCCEECTTSEECCTTCCEEEEEEEC-CCSCCC--CTTCCBCCSEEEEEEESCTTCCEECT-------TTTTTTBSS
T ss_pred             CCCCCeeEcCHHHhCCCCCCCEEeCCCCC-Cccccc--cccccccccccEEECCCCcchhhcCc-------ccccchhcc
Confidence            98 8899777 457889999999999998 777886  77888888   9999999 7773322       457788999


Q ss_pred             C-EEEeeeccCccccchhhccCCceeEeeccCcccccCCCCcCceEEEeecC-chhhhhhHHHHh-cccceeecCCccch
Q 037941          195 T-TLEMLILDAQVMPRELFSLGLERNKIFLGDVWSWTGKYETSRTLKLKLDN-RMYLEHGIKMLL-RRTEDLHLDKLNGL  271 (308)
Q Consensus       195 ~-~L~l~~~~~~~~p~~~~~~~L~~l~i~~~~~~~~~~~~~~L~~L~L~~~~-~~~~~~~~~~~~-~~L~~L~l~~~~~~  271 (308)
                      + .|++++|.++.+|...+.                  . ++|+.|+|+.|. ..........-+ ++|++|++++ +.+
T Consensus       158 ~~~L~l~~n~l~~i~~~~~~------------------~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~-N~l  217 (239)
T 2xwt_C          158 TLTLKLYNNGFTSVQGYAFN------------------G-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQ-TSV  217 (239)
T ss_dssp             EEEEECCSCCCCEECTTTTT------------------T-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTT-CCC
T ss_pred             eeEEEcCCCCCcccCHhhcC------------------C-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCC-Ccc
Confidence            9 999999987777655322                  1 356666666663 333333333334 8999999998 666


Q ss_pred             hhhhhccCCCCCCcccEEeccccccc
Q 037941          272 QNVLHELDGEGFPRLKHLLVQNASEI  297 (308)
Q Consensus       272 ~~~~~~~~~~~~~~L~~L~l~~c~~l  297 (308)
                      +.+    +...|++|+.|.+.++..+
T Consensus       218 ~~l----~~~~~~~L~~L~l~~~~~l  239 (239)
T 2xwt_C          218 TAL----PSKGLEHLKELIARNTWTL  239 (239)
T ss_dssp             CCC----CCTTCTTCSEEECTTC---
T ss_pred             ccC----ChhHhccCceeeccCccCC
Confidence            654    3347899999999998653

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.82  E-value=7.1e-20  Score=167.66  Aligned_cols=214  Identities=14%  Similarity=0.132  Sum_probs=171.7

Q ss_pred             CCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCCCCCCcccccccccccEEeecCCcCcccchhhhCcC
Q 037941           57 ECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKKLVIFSFRNSHIEQLPEEIGQLT  136 (308)
Q Consensus        57 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~~~~l~~l~~L~~L~l~~~~i~~l~~~~~~l~  136 (308)
                      .+++|++|++++|.+++..|.. +..+++|++|++++|.+...++       ++.+++|++|++++|.++.+|..    +
T Consensus        32 ~~~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~Ls~N~l~~~~~-------l~~l~~L~~L~Ls~N~l~~l~~~----~   99 (487)
T 3oja_A           32 SAWNVKELDLSGNPLSQISAAD-LAPFTKLELLNLSSNVLYETLD-------LESLSTLRTLDLNNNYVQELLVG----P   99 (487)
T ss_dssp             TGGGCCEEECCSSCCCCCCGGG-GTTCTTCCEEECTTSCCEEEEE-------CTTCTTCCEEECCSSEEEEEEEC----T
T ss_pred             cCCCccEEEeeCCcCCCCCHHH-HhCCCCCCEEEeeCCCCCCCcc-------cccCCCCCEEEecCCcCCCCCCC----C
Confidence            4559999999999998644444 5899999999999999987665       67899999999999999977753    8


Q ss_pred             CCCEEecCCCCCCCccCcchhcCCCCCceEEccCCcccccccCCcccchhhhhcCCCCCEEEeeeccCccc-cchhh--c
Q 037941          137 RLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEVEGQNNASLAELNQLSRLTTLEMLILDAQVM-PRELF--S  213 (308)
Q Consensus       137 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-p~~~~--~  213 (308)
                      +|+.|++++|. +..++..   .+++|+.|++++|.+.+..+       ..+..+++|+.|++++|.++.+ |..+.  .
T Consensus       100 ~L~~L~L~~N~-l~~~~~~---~l~~L~~L~L~~N~l~~~~~-------~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l  168 (487)
T 3oja_A          100 SIETLHAANNN-ISRVSCS---RGQGKKNIYLANNKITMLRD-------LDEGCRSRVQYLDLKLNEIDTVNFAELAASS  168 (487)
T ss_dssp             TCCEEECCSSC-CCCEEEC---CCSSCEEEECCSSCCCSGGG-------BCGGGGSSEEEEECTTSCCCEEEGGGGGGGT
T ss_pred             CcCEEECcCCc-CCCCCcc---ccCCCCEEECCCCCCCCCCc-------hhhcCCCCCCEEECCCCCCCCcChHHHhhhC
Confidence            99999999998 6666643   57899999999999884332       4677899999999999998874 44443  2


Q ss_pred             cCCceeEeeccCcccc--cCCCCcCceEEEeecCchhhhhhHHHHhcccceeecCCccchhhhhhccCCCCCCcccEEec
Q 037941          214 LGLERNKIFLGDVWSW--TGKYETSRTLKLKLDNRMYLEHGIKMLLRRTEDLHLDKLNGLQNVLHELDGEGFPRLKHLLV  291 (308)
Q Consensus       214 ~~L~~l~i~~~~~~~~--~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l  291 (308)
                      ++|+.|++..+.+...  ...+++|+.|+|+.|.....+..+..+ ++|+.|++++ +.++.++..+  ..+++|+.|++
T Consensus       169 ~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l-~~L~~L~Ls~-N~l~~lp~~l--~~l~~L~~L~l  244 (487)
T 3oja_A          169 DTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSA-AGVTWISLRN-NKLVLIEKAL--RFSQNLEHFDL  244 (487)
T ss_dssp             TTCCEEECTTSCCCEEECCCCCTTCCEEECCSSCCCEECGGGGGG-TTCSEEECTT-SCCCEECTTC--CCCTTCCEEEC
T ss_pred             CcccEEecCCCccccccccccCCCCCEEECCCCCCCCCCHhHcCC-CCccEEEecC-CcCcccchhh--ccCCCCCEEEc
Confidence            8999999988876543  335889999999999877665665554 9999999999 6666655433  56899999999


Q ss_pred             cccccc
Q 037941          292 QNASEI  297 (308)
Q Consensus       292 ~~c~~l  297 (308)
                      .+|+-.
T Consensus       245 ~~N~l~  250 (487)
T 3oja_A          245 RGNGFH  250 (487)
T ss_dssp             TTCCBC
T ss_pred             CCCCCc
Confidence            998543

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.81  E-value=3.3e-19  Score=173.69  Aligned_cols=243  Identities=19%  Similarity=0.139  Sum_probs=155.4

Q ss_pred             CCCCeeEEeecCCCCCCCC-cC-CCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCCCCCCcccccccc
Q 037941           36 QKDPIAISHPCRDIQELPE-KL-ECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLK  113 (308)
Q Consensus        36 ~~~l~~L~l~~~~~~~~~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~~~~l~~l~  113 (308)
                      .++++.|++++|.+..+++ .+ .+++|+.|++++|.+++..+.. |.++++|++|++++|.+..+++..     +..++
T Consensus       265 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~-----~~~l~  338 (844)
T 3j0a_A          265 RSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEA-FYGLDNLQVLNLSYNLLGELYSSN-----FYGLP  338 (844)
T ss_dssp             TSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTT-TTTCSSCCEEEEESCCCSCCCSCS-----CSSCT
T ss_pred             cCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHH-hcCCCCCCEEECCCCCCCccCHHH-----hcCCC
Confidence            4688999999998866544 34 8899999999999887554444 478999999999999998764432     88889


Q ss_pred             cccEEeecCCcCcccch-hhhCcCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCcccccccCC------------
Q 037941          114 KLVIFSFRNSHIEQLPE-EIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEVEGQ------------  180 (308)
Q Consensus       114 ~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~------------  180 (308)
                      +|++|++++|.+..++. .+..+++|+.|++++|. ++.++.     +++|+.|++++|.+...+...            
T Consensus       339 ~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~i~~-----~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~  412 (844)
T 3j0a_A          339 KVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNA-LTTIHF-----IPSIPDIFLSGNKLVTLPKINLTANLIHLSENR  412 (844)
T ss_dssp             TCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCC-SCCCSS-----CCSCSEEEEESCCCCCCCCCCTTCCEEECCSCC
T ss_pred             CCCEEECCCCCCCccChhhhcCCCCCCEEECCCCC-CCcccC-----CCCcchhccCCCCcccccccccccceeecccCc
Confidence            99999999998886654 57788899999998887 554432     455666666666554322110            


Q ss_pred             --cccchhhhhcCCCCCEEEeeeccCccccchhh---ccCCceeEeeccCcc---------cccCCCCcCceEEEeecCc
Q 037941          181 --NNASLAELNQLSRLTTLEMLILDAQVMPRELF---SLGLERNKIFLGDVW---------SWTGKYETSRTLKLKLDNR  246 (308)
Q Consensus       181 --~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~~~---~~~L~~l~i~~~~~~---------~~~~~~~~L~~L~L~~~~~  246 (308)
                        .......+..+++|+.|++++|.++.++....   .++|+.|++..+.+.         ..+..+++|+.|+|+.|..
T Consensus       413 l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l  492 (844)
T 3j0a_A          413 LENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYL  492 (844)
T ss_dssp             CCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHH
T ss_pred             cccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcc
Confidence              00112335577888888888888766544322   166777777655432         1234456666666666644


Q ss_pred             hhhhhhHHHHhcccceeecCCccchhhhhhccCCCCCCcccEEecccc
Q 037941          247 MYLEHGIKMLLRRTEDLHLDKLNGLQNVLHELDGEGFPRLKHLLVQNA  294 (308)
Q Consensus       247 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c  294 (308)
                      .........-+++|+.|++++ +.++.+++...   .++|+.|++++|
T Consensus       493 ~~~~~~~~~~l~~L~~L~Ls~-N~l~~l~~~~~---~~~L~~L~Ls~N  536 (844)
T 3j0a_A          493 NSLPPGVFSHLTALRGLSLNS-NRLTVLSHNDL---PANLEILDISRN  536 (844)
T ss_dssp             TTCCTTSSSSCCSCSEEEEES-CCCSSCCCCCC---CSCCCEEEEEEE
T ss_pred             cccChhHccchhhhheeECCC-CCCCccChhhh---hccccEEECCCC
Confidence            443333222236666666666 44444332211   145555555554

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.81  E-value=1.2e-19  Score=156.74  Aligned_cols=220  Identities=15%  Similarity=0.145  Sum_probs=145.5

Q ss_pred             CeeEEeecCCCCC--CCCcC--------CCCCccEEEecCCCCcCCCCchhh-cCCCCccEEEccCCCCCCCCCCCCCcc
Q 037941           39 PIAISHPCRDIQE--LPEKL--------ECPKLKLFFLFSEKLSLVIPDLFF-EGVPSLQVLSLNGFHFPSLPSTLGDVA  107 (308)
Q Consensus        39 l~~L~l~~~~~~~--~~~~~--------~~~~L~~L~l~~~~~~~~~~~~~~-~~l~~L~~L~l~~~~~~~lp~~~~~~~  107 (308)
                      +++|++++|.+..  ++...        .+++|++|++++|.+++.+|..++ ..+++|++|++++|.+..+|..     
T Consensus        65 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-----  139 (312)
T 1wwl_A           65 IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAW-----  139 (312)
T ss_dssp             HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSH-----
T ss_pred             HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHH-----
Confidence            6777777776632  33322        377888888888887776776653 6778888888888888776655     


Q ss_pred             ccccc-----ccccEEeecCCcCcccc-hhhhCcCCCCEEecCCCCCCCc--cCcc-hhcCCCCCceEEccCCccccccc
Q 037941          108 TVGVL-----KKLVIFSFRNSHIEQLP-EEIGQLTRLKLLDLSTCSKLKS--IRPN-VISNLPRLEELYMGNSFTHWEVE  178 (308)
Q Consensus       108 ~l~~l-----~~L~~L~l~~~~i~~l~-~~~~~l~~L~~L~l~~~~~~~~--~~~~-~~~~l~~L~~L~l~~~~~~~~~~  178 (308)
                       ++.+     ++|++|++++|.++.++ ..++.+++|+.|++++|...+.  ++.. .+..+++|++|++++|.+.... 
T Consensus       140 -~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~-  217 (312)
T 1wwl_A          140 -LAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPS-  217 (312)
T ss_dssp             -HHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHH-
T ss_pred             -HHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchH-
Confidence             6665     77888888888877665 6677888888888888773332  2222 1267778888888888776211 


Q ss_pred             CCcccch-hhhhcCCCCCEEEeeeccCccccc-hhh--ccCCceeEeeccCcccccCCC-CcCceEEEeecCchhhhhhH
Q 037941          179 GQNNASL-AELNQLSRLTTLEMLILDAQVMPR-ELF--SLGLERNKIFLGDVWSWTGKY-ETSRTLKLKLDNRMYLEHGI  253 (308)
Q Consensus       179 ~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~p~-~~~--~~~L~~l~i~~~~~~~~~~~~-~~L~~L~L~~~~~~~~~~~~  253 (308)
                          ..+ ..+..+++|+.|++++|.++..+. ..+  ..+|+.|++..+.+......+ ++|+.|+|+.|.....+. +
T Consensus       218 ----~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~~L~~L~Ls~N~l~~~p~-~  292 (312)
T 1wwl_A          218 ----GVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPAKLSVLDLSYNRLDRNPS-P  292 (312)
T ss_dssp             ----HHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCCSEEEEEECCSSCCCSCCC-T
T ss_pred             ----HHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhccCCceEEECCCCCCCCChh-H
Confidence                111 234567788888888887766442 222  267788877766654433332 588888888887665433 3


Q ss_pred             HHHhcccceeecCCccchh
Q 037941          254 KMLLRRTEDLHLDKLNGLQ  272 (308)
Q Consensus       254 ~~~~~~L~~L~l~~~~~~~  272 (308)
                      .. +++|++|++++ +.++
T Consensus       293 ~~-l~~L~~L~L~~-N~l~  309 (312)
T 1wwl_A          293 DE-LPQVGNLSLKG-NPFL  309 (312)
T ss_dssp             TT-SCEEEEEECTT-CTTT
T ss_pred             hh-CCCCCEEeccC-CCCC
Confidence            33 48888999887 4444

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.81  E-value=1.3e-18  Score=145.63  Aligned_cols=157  Identities=22%  Similarity=0.315  Sum_probs=104.8

Q ss_pred             CCeeEEeecCCCCCCCCcCCCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCCCCCCcccccccccccE
Q 037941           38 DPIAISHPCRDIQELPEKLECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKKLVI  117 (308)
Q Consensus        38 ~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~~~~l~~l~~L~~  117 (308)
                      ..++++++++.+..+|.... ++++.|++++|.+++..+.. +.++++|++|++++|.+..+++..     +..+++|++
T Consensus        15 ~~~~l~~~~~~l~~~p~~~~-~~l~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~-----~~~l~~L~~   87 (251)
T 3m19_A           15 GKKEVDCQGKSLDSVPSGIP-ADTEKLDLQSTGLATLSDAT-FRGLTKLTWLNLDYNQLQTLSAGV-----FDDLTELGT   87 (251)
T ss_dssp             GGTEEECTTCCCSSCCSCCC-TTCCEEECTTSCCCCCCTTT-TTTCTTCCEEECTTSCCCCCCTTT-----TTTCTTCCE
T ss_pred             CCeEEecCCCCccccCCCCC-CCCCEEEccCCCcCccCHhH-hcCcccCCEEECCCCcCCccCHhH-----hccCCcCCE
Confidence            34567777777777766553 56777777777776433333 467777777777777777665543     667777777


Q ss_pred             EeecCCcCcccc-hhhhCcCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCcccccccCCcccchhhhhcCCCCCE
Q 037941          118 FSFRNSHIEQLP-EEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEVEGQNNASLAELNQLSRLTT  196 (308)
Q Consensus       118 L~l~~~~i~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~  196 (308)
                      |++++|.++.+| ..+..+++|+.|++++|. ++.++...+..+++|+.|++++|.+.+.++       ..+..+++|+.
T Consensus        88 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-------~~~~~l~~L~~  159 (251)
T 3m19_A           88 LGLANNQLASLPLGVFDHLTQLDKLYLGGNQ-LKSLPSGVFDRLTKLKELRLNTNQLQSIPA-------GAFDKLTNLQT  159 (251)
T ss_dssp             EECTTSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCT-------TTTTTCTTCCE
T ss_pred             EECCCCcccccChhHhcccCCCCEEEcCCCc-CCCcChhHhccCCcccEEECcCCcCCccCH-------HHcCcCcCCCE
Confidence            777777777665 345677777777777776 666666556677777777777777662222       34666777777


Q ss_pred             EEeeeccCccccc
Q 037941          197 LEMLILDAQVMPR  209 (308)
Q Consensus       197 L~l~~~~~~~~p~  209 (308)
                      |++++|.++.+|.
T Consensus       160 L~L~~N~l~~~~~  172 (251)
T 3m19_A          160 LSLSTNQLQSVPH  172 (251)
T ss_dssp             EECCSSCCSCCCT
T ss_pred             EECCCCcCCccCH
Confidence            7777776655554

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.81  E-value=8.6e-19  Score=146.73  Aligned_cols=171  Identities=20%  Similarity=0.259  Sum_probs=144.7

Q ss_pred             eecccchhhHhhhhcCCCCeeEEeecCCCCCCCCc-C-CCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCC
Q 037941           21 IQIISDLREVFEDLMQKDPIAISHPCRDIQELPEK-L-ECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPS   98 (308)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~   98 (308)
                      .+.+.++..+|. ...++++.|++++|.+..+++. + .+++|++|++++|.+++ ++...+..+++|++|++++|.+..
T Consensus        20 ~~~~~~l~~~p~-~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~   97 (251)
T 3m19_A           20 DCQGKSLDSVPS-GIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQT-LSAGVFDDLTELGTLGLANNQLAS   97 (251)
T ss_dssp             ECTTCCCSSCCS-CCCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCC-CCTTTTTTCTTCCEEECTTSCCCC
T ss_pred             ecCCCCccccCC-CCCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCc-cCHhHhccCCcCCEEECCCCcccc
Confidence            345677778874 3468999999999999877664 4 89999999999999985 444445789999999999999999


Q ss_pred             CCCCCCCcccccccccccEEeecCCcCcccchh-hhCcCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCcccccc
Q 037941           99 LPSTLGDVATVGVLKKLVIFSFRNSHIEQLPEE-IGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEV  177 (308)
Q Consensus        99 lp~~~~~~~~l~~l~~L~~L~l~~~~i~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~  177 (308)
                      +|...     +..+++|++|++++|.++.+|.. +..+++|+.|++++|. ++.++...++.+++|++|++++|.+.+.+
T Consensus        98 ~~~~~-----~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  171 (251)
T 3m19_A           98 LPLGV-----FDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQ-LQSIPAGAFDKLTNLQTLSLSTNQLQSVP  171 (251)
T ss_dssp             CCTTT-----TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred             cChhH-----hcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCc-CCccCHHHcCcCcCCCEEECCCCcCCccC
Confidence            88765     88999999999999999988765 6889999999999998 77888766899999999999999988433


Q ss_pred             cCCcccchhhhhcCCCCCEEEeeeccCcc
Q 037941          178 EGQNNASLAELNQLSRLTTLEMLILDAQV  206 (308)
Q Consensus       178 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  206 (308)
                      +       ..+..+++|+.|++++|.+.-
T Consensus       172 ~-------~~~~~l~~L~~L~l~~N~~~c  193 (251)
T 3m19_A          172 H-------GAFDRLGKLQTITLFGNQFDC  193 (251)
T ss_dssp             T-------TTTTTCTTCCEEECCSCCBCT
T ss_pred             H-------HHHhCCCCCCEEEeeCCceeC
Confidence            2       467889999999999997643

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.80  E-value=2.2e-18  Score=162.37  Aligned_cols=122  Identities=25%  Similarity=0.310  Sum_probs=103.8

Q ss_pred             ccchhhHhhh--hcCCCCeeEEeecCCCCCCCCc-C-CCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCC
Q 037941           24 ISDLREVFED--LMQKDPIAISHPCRDIQELPEK-L-ECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSL   99 (308)
Q Consensus        24 ~~~~~~~~~~--~~~~~l~~L~l~~~~~~~~~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l   99 (308)
                      ++.+..+|+.  ...++|++|++++|.+..+++. + ++++|++|++++|.++ .++...|.++++|++|++++|.++.+
T Consensus        61 ~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~-~l~~~~f~~L~~L~~L~Ls~N~l~~l  139 (635)
T 4g8a_A           61 FNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLASL  139 (635)
T ss_dssp             TSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC-EECGGGGTTCTTCCEEECTTSCCCCS
T ss_pred             CCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCC-CCCHHHhcCCCCCCEEECCCCcCCCC
Confidence            4566666643  4678999999999999888765 4 8999999999999987 56766678999999999999999999


Q ss_pred             CCCCCCcccccccccccEEeecCCcCc--ccchhhhCcCCCCEEecCCCCCCCcc
Q 037941          100 PSTLGDVATVGVLKKLVIFSFRNSHIE--QLPEEIGQLTRLKLLDLSTCSKLKSI  152 (308)
Q Consensus       100 p~~~~~~~~l~~l~~L~~L~l~~~~i~--~l~~~~~~l~~L~~L~l~~~~~~~~~  152 (308)
                      |+..     ++.+++|++|++++|.++  .+|..++.+++|+.|++++|. ++.+
T Consensus       140 ~~~~-----~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~-l~~~  188 (635)
T 4g8a_A          140 ENFP-----IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSI  188 (635)
T ss_dssp             TTCC-----CTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC-CCEE
T ss_pred             Chhh-----hhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcc-cccc
Confidence            8764     899999999999999987  567888999999999999987 4443

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.80  E-value=3.1e-19  Score=154.10  Aligned_cols=198  Identities=16%  Similarity=0.104  Sum_probs=87.5

Q ss_pred             CCCeeEEeecCCCC-CCCCc---CCCCCccEEEecCCCCcCCCC---chhhcCCCCccEEEccCCCCCCCCCCCCCcccc
Q 037941           37 KDPIAISHPCRDIQ-ELPEK---LECPKLKLFFLFSEKLSLVIP---DLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATV  109 (308)
Q Consensus        37 ~~l~~L~l~~~~~~-~~~~~---~~~~~L~~L~l~~~~~~~~~~---~~~~~~l~~L~~L~l~~~~~~~lp~~~~~~~~l  109 (308)
                      +++++|++++|.+. ..|..   ..+++|++|++++|.+++..+   ...+..+++|++|++++|.+..+|+..     +
T Consensus        91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~-----~  165 (310)
T 4glp_A           91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQ-----V  165 (310)
T ss_dssp             SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTS-----C
T ss_pred             CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHH-----h
Confidence            34555555555552 22222   235555555555555443222   011124555555555555555444322     4


Q ss_pred             cccccccEEeecCCcCcc---cch--hhhCcCCCCEEecCCCCCCCccCcc---hhcCCCCCceEEccCCcccccccCCc
Q 037941          110 GVLKKLVIFSFRNSHIEQ---LPE--EIGQLTRLKLLDLSTCSKLKSIRPN---VISNLPRLEELYMGNSFTHWEVEGQN  181 (308)
Q Consensus       110 ~~l~~L~~L~l~~~~i~~---l~~--~~~~l~~L~~L~l~~~~~~~~~~~~---~~~~l~~L~~L~l~~~~~~~~~~~~~  181 (308)
                      +.+++|++|++++|.+..   ++.  .++.+++|+.|++++|. ++.++..   .++.+++|++|++++|.+.+..+   
T Consensus       166 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p---  241 (310)
T 4glp_A          166 RAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTG-METPTGVCAALAAAGVQPHSLDLSHNSLRATVN---  241 (310)
T ss_dssp             CCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSC-CCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCC---
T ss_pred             ccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCC-CCchHHHHHHHHhcCCCCCEEECCCCCCCccch---
Confidence            455555555555554431   221  12345555555555554 3333321   23344555555555555442211   


Q ss_pred             ccchhhhhcCCCCCEEEeeeccCccccchhhccCCceeEeeccCcccccCCCCcCceEEEeecCchhhhhhHHHHhcccc
Q 037941          182 NASLAELNQLSRLTTLEMLILDAQVMPRELFSLGLERNKIFLGDVWSWTGKYETSRTLKLKLDNRMYLEHGIKMLLRRTE  261 (308)
Q Consensus       182 ~~~~~~l~~l~~L~~L~l~~~~~~~~p~~~~~~~L~~l~i~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~  261 (308)
                       .....+..+++|++|++++|.++.+|..+.                     ++|+.|+|+.|.....+. . ..+++|+
T Consensus       242 -~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~---------------------~~L~~L~Ls~N~l~~~~~-~-~~l~~L~  297 (310)
T 4glp_A          242 -PSAPRCMWSSALNSLNLSFAGLEQVPKGLP---------------------AKLRVLDLSSNRLNRAPQ-P-DELPEVD  297 (310)
T ss_dssp             -SCCSSCCCCTTCCCEECCSSCCCSCCSCCC---------------------SCCSCEECCSCCCCSCCC-T-TSCCCCS
T ss_pred             -hhHHhccCcCcCCEEECCCCCCCchhhhhc---------------------CCCCEEECCCCcCCCCch-h-hhCCCcc
Confidence             011111122455555555555544444332                     455555555554443211 1 2236666


Q ss_pred             eeecCC
Q 037941          262 DLHLDK  267 (308)
Q Consensus       262 ~L~l~~  267 (308)
                      +|++++
T Consensus       298 ~L~L~~  303 (310)
T 4glp_A          298 NLTLDG  303 (310)
T ss_dssp             CEECSS
T ss_pred             EEECcC
Confidence            666665

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.79  E-value=3.1e-18  Score=145.03  Aligned_cols=168  Identities=20%  Similarity=0.280  Sum_probs=141.8

Q ss_pred             ccchhhHhhhhcCCCCeeEEeecCCCCCCCCcCCCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCCCC
Q 037941           24 ISDLREVFEDLMQKDPIAISHPCRDIQELPEKLECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTL  103 (308)
Q Consensus        24 ~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~  103 (308)
                      +..+..++.....+++++|++++|.+..++....+++|++|++++|.++ .++...+..+++|++|++++|.+..+|+..
T Consensus        50 ~~~i~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  128 (272)
T 3rfs_A           50 NSDIKSVQGIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVENQLQSLPDGV  128 (272)
T ss_dssp             TSCCCCCTTGGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECTTSCCCCCCTTT
T ss_pred             CCCcccccccccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCccC-ccChhHhcCCcCCCEEECCCCcCCccCHHH
Confidence            3444555545668999999999999988775559999999999999988 455555689999999999999999888764


Q ss_pred             CCcccccccccccEEeecCCcCcccchh-hhCcCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCcccccccCCcc
Q 037941          104 GDVATVGVLKKLVIFSFRNSHIEQLPEE-IGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEVEGQNN  182 (308)
Q Consensus       104 ~~~~~l~~l~~L~~L~l~~~~i~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~  182 (308)
                           ++.+++|++|++++|.++.++.. ++.+++|+.|++++|. ++.++...++.+++|++|++++|.+.+..+    
T Consensus       129 -----~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~----  198 (272)
T 3rfs_A          129 -----FDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQ-LQSLPEGVFDKLTQLKDLRLYQNQLKSVPD----  198 (272)
T ss_dssp             -----TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCT----
T ss_pred             -----hccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCC-cCccCHHHhcCCccCCEEECCCCcCCccCH----
Confidence                 78999999999999999977754 6899999999999998 777877767899999999999999884332    


Q ss_pred             cchhhhhcCCCCCEEEeeeccCc
Q 037941          183 ASLAELNQLSRLTTLEMLILDAQ  205 (308)
Q Consensus       183 ~~~~~l~~l~~L~~L~l~~~~~~  205 (308)
                         ..+..+++|+.|++++|.+.
T Consensus       199 ---~~~~~l~~L~~L~l~~N~~~  218 (272)
T 3rfs_A          199 ---GVFDRLTSLQYIWLHDNPWD  218 (272)
T ss_dssp             ---TTTTTCTTCCEEECCSSCBC
T ss_pred             ---HHHhCCcCCCEEEccCCCcc
Confidence               45788999999999999643

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.79  E-value=3.7e-18  Score=147.18  Aligned_cols=182  Identities=14%  Similarity=0.173  Sum_probs=154.2

Q ss_pred             ccchhhHhhhhcCCCCeeEEeecCCCCCCCCcCCCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCCCC
Q 037941           24 ISDLREVFEDLMQKDPIAISHPCRDIQELPEKLECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTL  103 (308)
Q Consensus        24 ~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~  103 (308)
                      +..+..++.....+++++|++++|.+..+++...+++|++|++++|.++. ++ . +..+++|++|++++|.+..+|.  
T Consensus        50 ~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~~-~~-~-~~~l~~L~~L~l~~n~l~~~~~--  124 (308)
T 1h6u_A           50 GTGVTTIEGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKN-VS-A-IAGLQSIKTLDLTSTQITDVTP--  124 (308)
T ss_dssp             TSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSC-CG-G-GTTCTTCCEEECTTSCCCCCGG--
T ss_pred             CCCccCchhhhccCCCCEEEccCCcCCCChhHccCCCCCEEEccCCcCCC-ch-h-hcCCCCCCEEECCCCCCCCchh--
Confidence            34555566556689999999999999988884499999999999999874 44 3 5789999999999999998875  


Q ss_pred             CCcccccccccccEEeecCCcCcccchhhhCcCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCcccccccCCccc
Q 037941          104 GDVATVGVLKKLVIFSFRNSHIEQLPEEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEVEGQNNA  183 (308)
Q Consensus       104 ~~~~~l~~l~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~  183 (308)
                           +..+++|++|++++|.++.++. +..+++|+.|++++|. ++.++.  +..+++|+.|++++|.+.+.       
T Consensus       125 -----l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~--l~~l~~L~~L~l~~n~l~~~-------  188 (308)
T 1h6u_A          125 -----LAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQ-VSDLTP--LANLSKLTTLKADDNKISDI-------  188 (308)
T ss_dssp             -----GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSC-CCCCGG--GTTCTTCCEEECCSSCCCCC-------
T ss_pred             -----hcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCc-CCCChh--hcCCCCCCEEECCCCccCcC-------
Confidence                 8899999999999999998887 8899999999999998 777776  78999999999999998822       


Q ss_pred             chhhhhcCCCCCEEEeeeccCccccchhhccCCceeEeeccCccc
Q 037941          184 SLAELNQLSRLTTLEMLILDAQVMPRELFSLGLERNKIFLGDVWS  228 (308)
Q Consensus       184 ~~~~l~~l~~L~~L~l~~~~~~~~p~~~~~~~L~~l~i~~~~~~~  228 (308)
                        ..+..+++|++|++++|.++.++.....++|+.|++..+.+..
T Consensus       189 --~~l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~l~~N~i~~  231 (308)
T 1h6u_A          189 --SPLASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTNQTITN  231 (308)
T ss_dssp             --GGGGGCTTCCEEECTTSCCCBCGGGTTCTTCCEEEEEEEEEEC
T ss_pred             --hhhcCCCCCCEEEccCCccCccccccCCCCCCEEEccCCeeec
Confidence              2378899999999999999988864334899999988776543

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.78  E-value=2.7e-18  Score=146.87  Aligned_cols=170  Identities=21%  Similarity=0.193  Sum_probs=138.3

Q ss_pred             hcCCCCeeEEeecCCCCCCCCcCCCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCCCCCCcccccccc
Q 037941           34 LMQKDPIAISHPCRDIQELPEKLECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLK  113 (308)
Q Consensus        34 ~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~~~~l~~l~  113 (308)
                      ...++++.|++++|.+..++....+++|++|++++|.+++ ++.  +.++++|++|++++|.+..+|.       +..++
T Consensus        43 ~~l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~-~~~--l~~l~~L~~L~l~~n~l~~~~~-------l~~l~  112 (291)
T 1h6t_A           43 NELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTD-IKP--LANLKNLGWLFLDENKVKDLSS-------LKDLK  112 (291)
T ss_dssp             HHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCC-CGG--GTTCTTCCEEECCSSCCCCGGG-------GTTCT
T ss_pred             hhcCcccEEEccCCCcccChhHhcCCCCCEEEccCCccCC-Ccc--cccCCCCCEEECCCCcCCCChh-------hccCC
Confidence            3467899999999999888765589999999999999874 344  5789999999999999988765       78899


Q ss_pred             cccEEeecCCcCcccchhhhCcCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCcccccccCCcccchhhhhcCCC
Q 037941          114 KLVIFSFRNSHIEQLPEEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEVEGQNNASLAELNQLSR  193 (308)
Q Consensus       114 ~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~  193 (308)
                      +|++|++++|.++.++ .+..+++|+.|++++|. ++.++.  +..+++|++|++++|.+.+.         ..+..+++
T Consensus       113 ~L~~L~L~~n~i~~~~-~l~~l~~L~~L~l~~n~-l~~~~~--l~~l~~L~~L~L~~N~l~~~---------~~l~~l~~  179 (291)
T 1h6t_A          113 KLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNK-ITDITV--LSRLTKLDTLSLEDNQISDI---------VPLAGLTK  179 (291)
T ss_dssp             TCCEEECTTSCCCCCG-GGGGCTTCCEEECCSSC-CCCCGG--GGGCTTCSEEECCSSCCCCC---------GGGTTCTT
T ss_pred             CCCEEECCCCcCCCCh-hhcCCCCCCEEEccCCc-CCcchh--hccCCCCCEEEccCCccccc---------hhhcCCCc
Confidence            9999999999999875 48889999999999998 666643  88899999999999988822         22788999


Q ss_pred             CCEEEeeeccCccccchhhccCCceeEeeccCc
Q 037941          194 LTTLEMLILDAQVMPRELFSLGLERNKIFLGDV  226 (308)
Q Consensus       194 L~~L~l~~~~~~~~p~~~~~~~L~~l~i~~~~~  226 (308)
                      |+.|++++|.++.+|.....++|+.|++..+.+
T Consensus       180 L~~L~L~~N~i~~l~~l~~l~~L~~L~l~~n~i  212 (291)
T 1h6t_A          180 LQNLYLSKNHISDLRALAGLKNLDVLELFSQEC  212 (291)
T ss_dssp             CCEEECCSSCCCBCGGGTTCTTCSEEEEEEEEE
T ss_pred             cCEEECCCCcCCCChhhccCCCCCEEECcCCcc
Confidence            999999999888876533336777777665543

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.77  E-value=1.2e-18  Score=152.88  Aligned_cols=149  Identities=15%  Similarity=0.157  Sum_probs=115.7

Q ss_pred             eecccchhhHhhhhcCCCCeeEEeecCCCCCCCCcC--CCCCccEEEecCCCCcCCCCchhhcCCCCccE-EEccCCCCC
Q 037941           21 IQIISDLREVFEDLMQKDPIAISHPCRDIQELPEKL--ECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQV-LSLNGFHFP   97 (308)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~-L~l~~~~~~   97 (308)
                      .|.+.++.++|. ..++++++|++++|.++.+|+..  ++++|++|++++|.+.+.++...|.+++++.. +.+.+|++.
T Consensus        15 ~C~~~~Lt~iP~-~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~   93 (350)
T 4ay9_X           15 LCQESKVTEIPS-DLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLL   93 (350)
T ss_dssp             EEESTTCCSCCT-TCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCC
T ss_pred             EecCCCCCccCc-CcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCccc
Confidence            355678888884 45788999999999999998753  89999999999999877777777788888765 566778999


Q ss_pred             CCCCCCCCcccccccccccEEeecCCcCcccch-hhhCcCCCCEEecCCCCCCCccCcchhcCCC-CCceEEccCCcccc
Q 037941           98 SLPSTLGDVATVGVLKKLVIFSFRNSHIEQLPE-EIGQLTRLKLLDLSTCSKLKSIRPNVISNLP-RLEELYMGNSFTHW  175 (308)
Q Consensus        98 ~lp~~~~~~~~l~~l~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~  175 (308)
                      .+|+..     +..+++|++|++++|.++.+|. .+....++..+++.++..+..++...+..+. .++.|++++|.+..
T Consensus        94 ~l~~~~-----f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~  168 (350)
T 4ay9_X           94 YINPEA-----FQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE  168 (350)
T ss_dssp             EECTTS-----BCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE
T ss_pred             ccCchh-----hhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC
Confidence            887664     8899999999999999887764 3445566777777665557777765555554 57778888887764

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.77  E-value=2.6e-18  Score=139.58  Aligned_cols=143  Identities=23%  Similarity=0.353  Sum_probs=81.4

Q ss_pred             ccchhhHhhhhcCCCCeeEEeecCCCCCCCCcC--CCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCC
Q 037941           24 ISDLREVFEDLMQKDPIAISHPCRDIQELPEKL--ECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPS  101 (308)
Q Consensus        24 ~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~  101 (308)
                      +.++.++| ....+++++|++++|.+..+++..  .+++|++|++++|.++ .++...+..+++|++|++++|.+..+|.
T Consensus        16 ~~~l~~~p-~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~   93 (208)
T 2o6s_A           16 SQGRTSVP-TGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQLQSLPN   93 (208)
T ss_dssp             SSCCSSCC-SCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred             CCCccCCC-CCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccC-ccChhhcCCCCCcCEEECCCCcCCccCH
Confidence            34444444 223456666666666665555432  5666666666666655 3444444556666666666666665555


Q ss_pred             CCCCcccccccccccEEeecCCcCcccchh-hhCcCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCccc
Q 037941          102 TLGDVATVGVLKKLVIFSFRNSHIEQLPEE-IGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTH  174 (308)
Q Consensus       102 ~~~~~~~l~~l~~L~~L~l~~~~i~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~  174 (308)
                      ..     +..+++|++|++++|.++.++.. +..+++|+.|++++|. ++.++...+..+++|+.|++++|.+.
T Consensus        94 ~~-----~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~  161 (208)
T 2o6s_A           94 GV-----FDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYIWLHDNPWD  161 (208)
T ss_dssp             TT-----TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred             hH-----hcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCc-cceeCHHHhccCCCccEEEecCCCee
Confidence            43     45566666666666666655433 4556666666666665 44555544555666666666666544

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.76  E-value=1.6e-19  Score=160.56  Aligned_cols=251  Identities=15%  Similarity=0.070  Sum_probs=171.5

Q ss_pred             hcCCCCeeEEeecCCCCC-----CCCcC-CCCCccEEEecCCC---CcCCCCchh------hcCCCCccEEEccCCCCCC
Q 037941           34 LMQKDPIAISHPCRDIQE-----LPEKL-ECPKLKLFFLFSEK---LSLVIPDLF------FEGVPSLQVLSLNGFHFPS   98 (308)
Q Consensus        34 ~~~~~l~~L~l~~~~~~~-----~~~~~-~~~~L~~L~l~~~~---~~~~~~~~~------~~~l~~L~~L~l~~~~~~~   98 (308)
                      ...+++++|++++|.+..     ++..+ .+++|++|++++|.   +++.+|..+      +..+++|++|++++|.+..
T Consensus        29 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~  108 (386)
T 2ca6_A           29 LEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGP  108 (386)
T ss_dssp             HHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCT
T ss_pred             hcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCH
Confidence            346789999999998743     23334 78999999999864   344445443      3678999999999999885


Q ss_pred             -----CCCCCCCcccccccccccEEeecCCcCc-----ccchhhhCc---------CCCCEEecCCCCCCC--ccCc--c
Q 037941           99 -----LPSTLGDVATVGVLKKLVIFSFRNSHIE-----QLPEEIGQL---------TRLKLLDLSTCSKLK--SIRP--N  155 (308)
Q Consensus        99 -----lp~~~~~~~~l~~l~~L~~L~l~~~~i~-----~l~~~~~~l---------~~L~~L~l~~~~~~~--~~~~--~  155 (308)
                           +|..      +..+++|++|++++|.++     .++..+..+         ++|+.|++++|. ++  .++.  .
T Consensus       109 ~~~~~l~~~------l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~  181 (386)
T 2ca6_A          109 TAQEPLIDF------LSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR-LENGSMKEWAK  181 (386)
T ss_dssp             TTHHHHHHH------HHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC-CTGGGHHHHHH
T ss_pred             HHHHHHHHH------HHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC-CCcHHHHHHHH
Confidence                 5655      788899999999999886     233334444         899999999998 43  3332  2


Q ss_pred             hhcCCCCCceEEccCCcccccccCCcccchh-hhhcCCCCCEEEeeeccC-----ccccchhhc-cCCceeEeeccCccc
Q 037941          156 VISNLPRLEELYMGNSFTHWEVEGQNNASLA-ELNQLSRLTTLEMLILDA-----QVMPRELFS-LGLERNKIFLGDVWS  228 (308)
Q Consensus       156 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~-----~~~p~~~~~-~~L~~l~i~~~~~~~  228 (308)
                      .+..+++|+.|++++|.+....   ...... .+..+++|+.|++++|.+     ..+|..+.. ++|+.|++..+.+..
T Consensus       182 ~l~~~~~L~~L~L~~n~l~~~g---~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~  258 (386)
T 2ca6_A          182 TFQSHRLLHTVKMVQNGIRPEG---IEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSA  258 (386)
T ss_dssp             HHHHCTTCCEEECCSSCCCHHH---HHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCH
T ss_pred             HHHhCCCcCEEECcCCCCCHhH---HHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCch
Confidence            2667889999999999877211   011223 677889999999999987     456665555 888998887776543


Q ss_pred             c--------c--CCCCcCceEEEeecCchh-----hhhhHHHHhcccceeecCCccchhhhhh--ccCCCCCCcccEEec
Q 037941          229 W--------T--GKYETSRTLKLKLDNRMY-----LEHGIKMLLRRTEDLHLDKLNGLQNVLH--ELDGEGFPRLKHLLV  291 (308)
Q Consensus       229 ~--------~--~~~~~L~~L~L~~~~~~~-----~~~~~~~~~~~L~~L~l~~~~~~~~~~~--~~~~~~~~~L~~L~l  291 (308)
                      .        .  +.+++|+.|+|+.|....     ....+..-+++|++|++++++ +....+  ......++.++.+++
T Consensus       259 ~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~-l~~~~~~~~~l~~~l~~~~~~~l  337 (386)
T 2ca6_A          259 RGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNR-FSEEDDVVDEIREVFSTRGRGEL  337 (386)
T ss_dssp             HHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSB-SCTTSHHHHHHHHHHHHHTCCEE
T ss_pred             hhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCc-CCcchhHHHHHHHHhhhcCcchh
Confidence            2        2  337889999998887655     344443435889999998843 333221  111233566665555


Q ss_pred             cccc
Q 037941          292 QNAS  295 (308)
Q Consensus       292 ~~c~  295 (308)
                      ....
T Consensus       338 ~~~d  341 (386)
T 2ca6_A          338 DELD  341 (386)
T ss_dssp             CCCC
T ss_pred             hhcc
Confidence            4443

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.75  E-value=9.9e-19  Score=150.94  Aligned_cols=222  Identities=11%  Similarity=0.113  Sum_probs=149.9

Q ss_pred             CCCCccEEEecCCCCcCCCCchh--hcCCCCccEEEccCCCCC-CCCCCCCCcccc--cccccccEEeecCCcCcc-cc-
Q 037941           57 ECPKLKLFFLFSEKLSLVIPDLF--FEGVPSLQVLSLNGFHFP-SLPSTLGDVATV--GVLKKLVIFSFRNSHIEQ-LP-  129 (308)
Q Consensus        57 ~~~~L~~L~l~~~~~~~~~~~~~--~~~l~~L~~L~l~~~~~~-~lp~~~~~~~~l--~~l~~L~~L~l~~~~i~~-l~-  129 (308)
                      ....++.+.+.++.++......+  +..+++|++|++++|.+. ..|..      +  ..+++|++|++++|.++. .+ 
T Consensus        62 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~------~~~~~~~~L~~L~Ls~n~i~~~~~~  135 (310)
T 4glp_A           62 KALRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPL------PLEATGLALSSLRLRNVSWATGRSW  135 (310)
T ss_dssp             SSCCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCC------SSSCCCBCCSSCEEESCCCSSTTSS
T ss_pred             hhcceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhh------hhhccCCCCCEEEeecccccchhhh
Confidence            44456777777776542111111  113566888888888887 45555      4  778888888888888773 22 


Q ss_pred             ---hhhhCcCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCcccccccCCcccchhhhhcCCCCCEEEeeeccCcc
Q 037941          130 ---EEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEVEGQNNASLAELNQLSRLTTLEMLILDAQV  206 (308)
Q Consensus       130 ---~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  206 (308)
                         ..+..+++|+.|++++|. +..++...++.+++|++|++++|.+.+...   ......+..+++|++|++++|.++.
T Consensus       136 ~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~---~~~~~~~~~l~~L~~L~Ls~N~l~~  211 (310)
T 4glp_A          136 LAELQQWLKPGLKVLSIAQAH-SPAFSCEQVRAFPALTSLDLSDNPGLGERG---LMAALCPHKFPAIQNLALRNTGMET  211 (310)
T ss_dssp             HHHHHTTBCSCCCEEEEECCS-SCCCCTTSCCCCTTCCEEECCSCTTCHHHH---HHTTSCTTSSCCCCSCBCCSSCCCC
T ss_pred             hHHHHhhhccCCCEEEeeCCC-cchhhHHHhccCCCCCEEECCCCCCccchh---hhHHHhhhcCCCCCEEECCCCCCCc
Confidence               234567888888888888 566665557788888888888887652100   0001123577888888888888876


Q ss_pred             ccch---h-hc-cCCceeEeeccCcccc----cCCC---CcCceEEEeecCchhhhhhHHHHhcccceeecCCccchhhh
Q 037941          207 MPRE---L-FS-LGLERNKIFLGDVWSW----TGKY---ETSRTLKLKLDNRMYLEHGIKMLLRRTEDLHLDKLNGLQNV  274 (308)
Q Consensus       207 ~p~~---~-~~-~~L~~l~i~~~~~~~~----~~~~---~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  274 (308)
                      ++..   + .. .+|+.|+++.+.+...    ...+   ++|+.|+|+.|.....+..+   +++|++|++++ +.++.+
T Consensus       212 l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~---~~~L~~L~Ls~-N~l~~~  287 (310)
T 4glp_A          212 PTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGL---PAKLRVLDLSS-NRLNRA  287 (310)
T ss_dssp             HHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCC---CSCCSCEECCS-CCCCSC
T ss_pred             hHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhh---cCCCCEEECCC-CcCCCC
Confidence            6653   2 12 7888888877665443    3333   69999999998776544433   48999999998 666664


Q ss_pred             hhccCCCCCCcccEEeccccc
Q 037941          275 LHELDGEGFPRLKHLLVQNAS  295 (308)
Q Consensus       275 ~~~~~~~~~~~L~~L~l~~c~  295 (308)
                      +.   ...+++|+.|++++++
T Consensus       288 ~~---~~~l~~L~~L~L~~N~  305 (310)
T 4glp_A          288 PQ---PDELPEVDNLTLDGNP  305 (310)
T ss_dssp             CC---TTSCCCCSCEECSSTT
T ss_pred             ch---hhhCCCccEEECcCCC
Confidence            22   3678999999999984

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.75  E-value=1.9e-17  Score=136.61  Aligned_cols=148  Identities=18%  Similarity=0.313  Sum_probs=80.4

Q ss_pred             eEEeecCCCCCCCCcCCCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCCCCCCcccccccccccEEee
Q 037941           41 AISHPCRDIQELPEKLECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKKLVIFSF  120 (308)
Q Consensus        41 ~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~~~~l~~l~~L~~L~l  120 (308)
                      .++.+++.+..+|.... ++|++|++++|.+++..+.. +.++++|++|++++|.+..+|...     +..+++|++|++
T Consensus        23 ~v~c~~~~l~~ip~~~~-~~L~~L~Ls~n~i~~~~~~~-~~~l~~L~~L~L~~N~l~~i~~~~-----~~~l~~L~~L~L   95 (229)
T 3e6j_A           23 TVDCRSKRHASVPAGIP-TNAQILYLHDNQITKLEPGV-FDSLINLKELYLGSNQLGALPVGV-----FDSLTQLTVLDL   95 (229)
T ss_dssp             EEECTTSCCSSCCSCCC-TTCSEEECCSSCCCCCCTTT-TTTCTTCCEEECCSSCCCCCCTTT-----TTTCTTCCEEEC
T ss_pred             EeEccCCCcCccCCCCC-CCCCEEEcCCCccCccCHHH-hhCccCCcEEECCCCCCCCcChhh-----cccCCCcCEEEC
Confidence            35555555555554332 55666666666655333332 345666666666666666555543     455666666666


Q ss_pred             cCCcCcccchh-hhCcCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCcccccccCCcccchhhhhcCCCCCEEEe
Q 037941          121 RNSHIEQLPEE-IGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEVEGQNNASLAELNQLSRLTTLEM  199 (308)
Q Consensus       121 ~~~~i~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l  199 (308)
                      ++|.++.++.. +..+++|+.|++++|. ++.+|.. +..+++|++|++++|.+.....       ..+..+++|+.|++
T Consensus        96 s~N~l~~l~~~~~~~l~~L~~L~Ls~N~-l~~lp~~-~~~l~~L~~L~L~~N~l~~~~~-------~~~~~l~~L~~L~l  166 (229)
T 3e6j_A           96 GTNQLTVLPSAVFDRLVHLKELFMCCNK-LTELPRG-IERLTHLTHLALDQNQLKSIPH-------GAFDRLSSLTHAYL  166 (229)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSC-CCSCCTT-GGGCTTCSEEECCSSCCCCCCT-------TTTTTCTTCCEEEC
T ss_pred             CCCcCCccChhHhCcchhhCeEeccCCc-ccccCcc-cccCCCCCEEECCCCcCCccCH-------HHHhCCCCCCEEEe
Confidence            66666555433 4555666666666655 4555554 4556666666666665552211       23455556666666


Q ss_pred             eeccC
Q 037941          200 LILDA  204 (308)
Q Consensus       200 ~~~~~  204 (308)
                      ++|.+
T Consensus       167 ~~N~~  171 (229)
T 3e6j_A          167 FGNPW  171 (229)
T ss_dssp             TTSCB
T ss_pred             eCCCc
Confidence            66553

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.75  E-value=2e-19  Score=159.94  Aligned_cols=246  Identities=14%  Similarity=0.069  Sum_probs=168.7

Q ss_pred             eecCCCCCCCCcC-CCCCccEEEecCCCCcCCCCch---hhcCCCCccEEEccCCCCCCC----CCCCCCc-cccccccc
Q 037941           44 HPCRDIQELPEKL-ECPKLKLFFLFSEKLSLVIPDL---FFEGVPSLQVLSLNGFHFPSL----PSTLGDV-ATVGVLKK  114 (308)
Q Consensus        44 l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~---~~~~l~~L~~L~l~~~~~~~l----p~~~~~~-~~l~~l~~  114 (308)
                      +....+..++... .+++|++|++++|.++...+..   .+..+++|++|++++|.+..+    |..+..+ ..+..+++
T Consensus        16 l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~   95 (386)
T 2ca6_A           16 ITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPK   95 (386)
T ss_dssp             CCSHHHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTT
T ss_pred             CCHHHHHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCc
Confidence            3333345566655 7899999999999887543322   245799999999999876643    4431000 11267899


Q ss_pred             ccEEeecCCcCcc-----cchhhhCcCCCCEEecCCCCCCCccCcch----hcCC---------CCCceEEccCCccccc
Q 037941          115 LVIFSFRNSHIEQ-----LPEEIGQLTRLKLLDLSTCSKLKSIRPNV----ISNL---------PRLEELYMGNSFTHWE  176 (308)
Q Consensus       115 L~~L~l~~~~i~~-----l~~~~~~l~~L~~L~l~~~~~~~~~~~~~----~~~l---------~~L~~L~l~~~~~~~~  176 (308)
                      |++|++++|.++.     +|..+..+++|++|++++|. ++......    +..+         ++|++|++++|.+...
T Consensus        96 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~  174 (386)
T 2ca6_A           96 LHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNG-LGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENG  174 (386)
T ss_dssp             CCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSC-CHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGG
T ss_pred             ccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCC-CCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcH
Confidence            9999999999885     77788999999999999998 44322211    3333         8999999999988621


Q ss_pred             ccCCcccchhhhhcCCCCCEEEeeeccCc------cccchhhc-cCCceeEeeccCcc--------cccCCCCcCceEEE
Q 037941          177 VEGQNNASLAELNQLSRLTTLEMLILDAQ------VMPRELFS-LGLERNKIFLGDVW--------SWTGKYETSRTLKL  241 (308)
Q Consensus       177 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~------~~p~~~~~-~~L~~l~i~~~~~~--------~~~~~~~~L~~L~L  241 (308)
                      .   .......+..+++|++|++++|.++      .+|..+.. ++|+.|++..+.+.        .....+++|+.|+|
T Consensus       175 ~---~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L  251 (386)
T 2ca6_A          175 S---MKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGL  251 (386)
T ss_dssp             G---HHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEEC
T ss_pred             H---HHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEEC
Confidence            1   1122356778999999999999876      23324333 88999999877762        34667889999999


Q ss_pred             eecCchhh-----hhhHHH-HhcccceeecCCccchhh-----hhhccCCCCCCcccEEeccccc
Q 037941          242 KLDNRMYL-----EHGIKM-LLRRTEDLHLDKLNGLQN-----VLHELDGEGFPRLKHLLVQNAS  295 (308)
Q Consensus       242 ~~~~~~~~-----~~~~~~-~~~~L~~L~l~~~~~~~~-----~~~~~~~~~~~~L~~L~l~~c~  295 (308)
                      +.|.....     ...+.. -+++|++|+++++ .++.     ++..+ ...+++|+.|++++|+
T Consensus       252 ~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n-~i~~~g~~~l~~~l-~~~l~~L~~L~l~~N~  314 (386)
T 2ca6_A          252 NDCLLSARGAAAVVDAFSKLENIGLQTLRLQYN-EIELDAVRTLKTVI-DEKMPDLLFLELNGNR  314 (386)
T ss_dssp             TTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSS-CCBHHHHHHHHHHH-HHHCTTCCEEECTTSB
T ss_pred             CCCCCchhhHHHHHHHHhhccCCCeEEEECcCC-cCCHHHHHHHHHHH-HhcCCCceEEEccCCc
Confidence            99875543     111111 1488999999984 4444     32222 2447999999999984

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.74  E-value=1.2e-18  Score=151.92  Aligned_cols=127  Identities=17%  Similarity=0.263  Sum_probs=58.0

Q ss_pred             CCCeeEEeecCCCCCCCCcC-CCCCccEEEecCCCCcCC-CCchhhcCCCCccEEEccCCCCC-CCCCCCCCcccccccc
Q 037941           37 KDPIAISHPCRDIQELPEKL-ECPKLKLFFLFSEKLSLV-IPDLFFEGVPSLQVLSLNGFHFP-SLPSTLGDVATVGVLK  113 (308)
Q Consensus        37 ~~l~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~-~lp~~~~~~~~l~~l~  113 (308)
                      ++++.+++.++.+...++.. .+++|++|++++|.++.. ++. .+.++++|++|++++|.+. ..|..      ++.++
T Consensus        70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~-~~~~~~~L~~L~L~~~~l~~~~~~~------l~~~~  142 (336)
T 2ast_B           70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHG-ILSQCSKLQNLSLEGLRLSDPIVNT------LAKNS  142 (336)
T ss_dssp             TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHH-HHTTBCCCSEEECTTCBCCHHHHHH------HTTCT
T ss_pred             ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHH-HHhhCCCCCEEeCcCcccCHHHHHH------HhcCC
Confidence            44555555555443332222 455555555555544322 222 2244555555555555444 23333      44455


Q ss_pred             cccEEeecCC-cCc--ccchhhhCcCCCCEEecCCCCCCCc--cCcchhcCCC-CCceEEccCC
Q 037941          114 KLVIFSFRNS-HIE--QLPEEIGQLTRLKLLDLSTCSKLKS--IRPNVISNLP-RLEELYMGNS  171 (308)
Q Consensus       114 ~L~~L~l~~~-~i~--~l~~~~~~l~~L~~L~l~~~~~~~~--~~~~~~~~l~-~L~~L~l~~~  171 (308)
                      +|++|++++| .++  .++..+..+++|+.|++++|..++.  ++.. +..++ +|++|++++|
T Consensus       143 ~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~-~~~l~~~L~~L~l~~~  205 (336)
T 2ast_B          143 NLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVA-VAHVSETITQLNLSGY  205 (336)
T ss_dssp             TCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHH-HHHSCTTCCEEECCSC
T ss_pred             CCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHH-HHhcccCCCEEEeCCC
Confidence            5555555555 344  2444445555555555555511332  2221 34445 5555555555

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.74  E-value=2.7e-17  Score=132.48  Aligned_cols=152  Identities=16%  Similarity=0.203  Sum_probs=125.2

Q ss_pred             cCCCCeeEEeecCCCCCCCCcCCCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCC-CCCCCCCcccccccc
Q 037941           35 MQKDPIAISHPCRDIQELPEKLECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPS-LPSTLGDVATVGVLK  113 (308)
Q Consensus        35 ~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-lp~~~~~~~~l~~l~  113 (308)
                      ..+++++|++++|.+.++|....+++|++|++++|.++ .++ . +..+++|++|++++|.+.. .|..      ++.++
T Consensus        42 ~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~-~~~-~-l~~l~~L~~L~l~~n~l~~~~~~~------l~~l~  112 (197)
T 4ezg_A           42 QMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHAT-NYN-P-ISGLSNLERLRIMGKDVTSDKIPN------LSGLT  112 (197)
T ss_dssp             HHHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCS-CCG-G-GTTCTTCCEEEEECTTCBGGGSCC------CTTCT
T ss_pred             hcCCccEEeccCCCccChHHHhcCCCCCEEEccCCCCC-cch-h-hhcCCCCCEEEeECCccCcccChh------hcCCC
Confidence            36789999999999998885449999999999999765 332 3 4789999999999999985 5666      88999


Q ss_pred             cccEEeecCCcCc-ccchhhhCcCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCcccccccCCcccchhhhhcCC
Q 037941          114 KLVIFSFRNSHIE-QLPEEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEVEGQNNASLAELNQLS  192 (308)
Q Consensus       114 ~L~~L~l~~~~i~-~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~  192 (308)
                      +|++|++++|.++ ..|..++.+++|+.|++++|..++.+|.  +..+++|+.|++++|.+.+         +..+..++
T Consensus       113 ~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~--l~~l~~L~~L~l~~n~i~~---------~~~l~~l~  181 (197)
T 4ezg_A          113 SLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP--LKTLPELKSLNIQFDGVHD---------YRGIEDFP  181 (197)
T ss_dssp             TCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGG--GGGCSSCCEEECTTBCCCC---------CTTGGGCS
T ss_pred             CCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHh--hcCCCCCCEEECCCCCCcC---------hHHhccCC
Confidence            9999999999998 4677899999999999999975677773  8899999999999999882         22677889


Q ss_pred             CCCEEEeeeccCcc
Q 037941          193 RLTTLEMLILDAQV  206 (308)
Q Consensus       193 ~L~~L~l~~~~~~~  206 (308)
                      +|+.|++++|.++.
T Consensus       182 ~L~~L~l~~N~i~~  195 (197)
T 4ezg_A          182 KLNQLYAFSQTIGG  195 (197)
T ss_dssp             SCCEEEECBC----
T ss_pred             CCCEEEeeCcccCC
Confidence            99999999997643

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.74  E-value=2e-17  Score=154.75  Aligned_cols=171  Identities=20%  Similarity=0.199  Sum_probs=141.6

Q ss_pred             hhcCCCCeeEEeecCCCCCCCCcCCCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCCCCCCccccccc
Q 037941           33 DLMQKDPIAISHPCRDIQELPEKLECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVL  112 (308)
Q Consensus        33 ~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~~~~l~~l  112 (308)
                      ...++.++.|++++|.+..++....+++|+.|++++|.+.+ ++.  +..+++|+.|++++|.+..+|.       +..+
T Consensus        39 ~~~L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~-~~~--l~~l~~L~~L~Ls~N~l~~l~~-------l~~l  108 (605)
T 1m9s_A           39 QNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTD-IKP--LTNLKNLGWLFLDENKIKDLSS-------LKDL  108 (605)
T ss_dssp             HHHHTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCC-CGG--GGGCTTCCEEECCSSCCCCCTT-------STTC
T ss_pred             hhcCCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCC-Chh--hccCCCCCEEECcCCCCCCChh-------hccC
Confidence            34578899999999999888865599999999999999874 343  5789999999999999998774       8899


Q ss_pred             ccccEEeecCCcCcccchhhhCcCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCcccccccCCcccchhhhhcCC
Q 037941          113 KKLVIFSFRNSHIEQLPEEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEVEGQNNASLAELNQLS  192 (308)
Q Consensus       113 ~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~  192 (308)
                      ++|++|++++|.+..++. +..+++|+.|++++|. +..++.  +..+++|+.|++++|.+.+.        + .+..++
T Consensus       109 ~~L~~L~Ls~N~l~~l~~-l~~l~~L~~L~Ls~N~-l~~l~~--l~~l~~L~~L~Ls~N~l~~~--------~-~l~~l~  175 (605)
T 1m9s_A          109 KKLKSLSLEHNGISDING-LVHLPQLESLYLGNNK-ITDITV--LSRLTKLDTLSLEDNQISDI--------V-PLAGLT  175 (605)
T ss_dssp             TTCCEEECTTSCCCCCGG-GGGCTTCSEEECCSSC-CCCCGG--GGSCTTCSEEECCSSCCCCC--------G-GGTTCT
T ss_pred             CCCCEEEecCCCCCCCcc-ccCCCccCEEECCCCc-cCCchh--hcccCCCCEEECcCCcCCCc--------h-hhccCC
Confidence            999999999999998765 8899999999999998 666643  88999999999999988822        2 278899


Q ss_pred             CCCEEEeeeccCccccchhhccCCceeEeeccCc
Q 037941          193 RLTTLEMLILDAQVMPRELFSLGLERNKIFLGDV  226 (308)
Q Consensus       193 ~L~~L~l~~~~~~~~p~~~~~~~L~~l~i~~~~~  226 (308)
                      +|+.|++++|.+..+|.....++|+.|++..+.+
T Consensus       176 ~L~~L~Ls~N~i~~l~~l~~l~~L~~L~L~~N~l  209 (605)
T 1m9s_A          176 KLQNLYLSKNHISDLRALAGLKNLDVLELFSQEC  209 (605)
T ss_dssp             TCCEEECCSSCCCBCGGGTTCTTCSEEECCSEEE
T ss_pred             CCCEEECcCCCCCCChHHccCCCCCEEEccCCcC
Confidence            9999999999988886543447888887765543

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.73  E-value=3e-17  Score=144.08  Aligned_cols=233  Identities=15%  Similarity=0.059  Sum_probs=178.1

Q ss_pred             eeEEeecCCCCCCCCcCCCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCC-CCCCCCCCcccccccccccE-
Q 037941           40 IAISHPCRDIQELPEKLECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFP-SLPSTLGDVATVGVLKKLVI-  117 (308)
Q Consensus        40 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~lp~~~~~~~~l~~l~~L~~-  117 (308)
                      +.++-+++.++++|..+ .+++++|++++|.++ .++...|.++++|++|++++|.+. .+|...     +..++++++ 
T Consensus        12 ~~v~C~~~~Lt~iP~~l-~~~l~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~-----f~~L~~l~~~   84 (350)
T 4ay9_X           12 RVFLCQESKVTEIPSDL-PRNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADV-----FSNLPKLHEI   84 (350)
T ss_dssp             TEEEEESTTCCSCCTTC-CTTCSEEEEESCCCS-EECTTSSTTCTTCCEEEEECCTTCCEECTTS-----BCSCTTCCEE
T ss_pred             CEEEecCCCCCccCcCc-CCCCCEEEccCCcCC-CcCHHHHcCCCCCCEEECcCCCCCCccChhH-----hhcchhhhhh
Confidence            45677788889998766 468999999999998 677766789999999999999985 577764     788888776 


Q ss_pred             EeecCCcCcccc-hhhhCcCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCC-cccccccCCcccchhhhhcCC-CC
Q 037941          118 FSFRNSHIEQLP-EEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNS-FTHWEVEGQNNASLAELNQLS-RL  194 (308)
Q Consensus       118 L~l~~~~i~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~l~~l~-~L  194 (308)
                      +.+.+|.++.++ ..+..+++|+.|++++|. +..+|...+....++..+++.++ .+.....       ..+..+. .+
T Consensus        85 l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~-------~~f~~~~~~l  156 (350)
T 4ay9_X           85 RIEKANNLLYINPEAFQNLPNLQYLLISNTG-IKHLPDVHKIHSLQKVLLDIQDNINIHTIER-------NSFVGLSFES  156 (350)
T ss_dssp             EEEEETTCCEECTTSBCCCTTCCEEEEEEEC-CSSCCCCTTCCBSSCEEEEEESCTTCCEECT-------TSSTTSBSSC
T ss_pred             hcccCCcccccCchhhhhccccccccccccc-cccCCchhhcccchhhhhhhccccccccccc-------cchhhcchhh
Confidence            556678899775 568899999999999998 77777654566677888888664 4442221       3444443 68


Q ss_pred             CEEEeeeccCccccchhhc-cCCceeEeec-cCccc----ccCCCCcCceEEEeecCchhhhhhHHHHhcccceeecCCc
Q 037941          195 TTLEMLILDAQVMPRELFS-LGLERNKIFL-GDVWS----WTGKYETSRTLKLKLDNRMYLEHGIKMLLRRTEDLHLDKL  268 (308)
Q Consensus       195 ~~L~l~~~~~~~~p~~~~~-~~L~~l~i~~-~~~~~----~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~  268 (308)
                      +.|++++|.++.+|...+. .+|+.+.+.. +.+..    .+..+++|+.|+|+.|.....+.+.   |.+|+.|.+.++
T Consensus       157 ~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~---~~~L~~L~~l~~  233 (350)
T 4ay9_X          157 VILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG---LENLKKLRARST  233 (350)
T ss_dssp             EEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSS---CTTCCEEECTTC
T ss_pred             hhhccccccccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhh---hccchHhhhccC
Confidence            8999999999999988766 7788887754 33222    3567889999999998766654432   588999999888


Q ss_pred             cchhhhhhccCCCCCCcccEEeccc
Q 037941          269 NGLQNVLHELDGEGFPRLKHLLVQN  293 (308)
Q Consensus       269 ~~~~~~~~~~~~~~~~~L~~L~l~~  293 (308)
                      +.++.++.   ...+++|+.+++.+
T Consensus       234 ~~l~~lP~---l~~l~~L~~l~l~~  255 (350)
T 4ay9_X          234 YNLKKLPT---LEKLVALMEASLTY  255 (350)
T ss_dssp             TTCCCCCC---TTTCCSCCEEECSC
T ss_pred             CCcCcCCC---chhCcChhhCcCCC
Confidence            88887542   36789999999865

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.73  E-value=7.2e-17  Score=137.98  Aligned_cols=164  Identities=20%  Similarity=0.292  Sum_probs=139.7

Q ss_pred             ccchhhHhhhhcCCCCeeEEeecCCCCCCCCcCCCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCCCC
Q 037941           24 ISDLREVFEDLMQKDPIAISHPCRDIQELPEKLECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTL  103 (308)
Q Consensus        24 ~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~  103 (308)
                      +..+..++.....+++++|++++|.+..+++...+++|++|++++|.++. ++.  +..+++|++|++++|.+..++.  
T Consensus        55 ~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n~l~~-~~~--l~~l~~L~~L~L~~n~i~~~~~--  129 (291)
T 1h6t_A           55 NSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKD-LSS--LKDLKKLKSLSLEHNGISDING--  129 (291)
T ss_dssp             TSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC-GGG--GTTCTTCCEEECTTSCCCCCGG--
T ss_pred             CCCcccChhHhcCCCCCEEEccCCccCCCcccccCCCCCEEECCCCcCCC-Chh--hccCCCCCEEECCCCcCCCChh--
Confidence            44555555556689999999999999888884499999999999999874 443  5789999999999999998754  


Q ss_pred             CCcccccccccccEEeecCCcCcccchhhhCcCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCcccccccCCccc
Q 037941          104 GDVATVGVLKKLVIFSFRNSHIEQLPEEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEVEGQNNA  183 (308)
Q Consensus       104 ~~~~~l~~l~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~  183 (308)
                           +..+++|++|++++|.++.+ ..+..+++|+.|++++|. ++.++.  +..+++|++|++++|.+.+        
T Consensus       130 -----l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~-l~~~~~--l~~l~~L~~L~L~~N~i~~--------  192 (291)
T 1h6t_A          130 -----LVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQ-ISDIVP--LAGLTKLQNLYLSKNHISD--------  192 (291)
T ss_dssp             -----GGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSC-CCCCGG--GTTCTTCCEEECCSSCCCB--------
T ss_pred             -----hcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCc-cccchh--hcCCCccCEEECCCCcCCC--------
Confidence                 88999999999999999988 459999999999999998 777765  7899999999999999882        


Q ss_pred             chhhhhcCCCCCEEEeeeccCccccch
Q 037941          184 SLAELNQLSRLTTLEMLILDAQVMPRE  210 (308)
Q Consensus       184 ~~~~l~~l~~L~~L~l~~~~~~~~p~~  210 (308)
                       +..+..+++|+.|++++|.+...|..
T Consensus       193 -l~~l~~l~~L~~L~l~~n~i~~~~~~  218 (291)
T 1h6t_A          193 -LRALAGLKNLDVLELFSQECLNKPIN  218 (291)
T ss_dssp             -CGGGTTCTTCSEEEEEEEEEECCCEE
T ss_pred             -ChhhccCCCCCEEECcCCcccCCccc
Confidence             23588999999999999987665543

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.73  E-value=5.2e-17  Score=133.14  Aligned_cols=151  Identities=13%  Similarity=0.184  Sum_probs=121.7

Q ss_pred             eeEEeecCCCCCCCCcCCCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCCCCCCcccccccccccEEe
Q 037941           40 IAISHPCRDIQELPEKLECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKKLVIFS  119 (308)
Q Consensus        40 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~~~~l~~l~~L~~L~  119 (308)
                      +.++++++.+..+|..+ ...+++|++++|.+++..+...|..+++|++|++++|.++.+++..     +..+++|++|+
T Consensus        14 ~~l~~s~n~l~~iP~~~-~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~-----~~~l~~L~~L~   87 (220)
T 2v70_A           14 TTVDCSNQKLNKIPEHI-PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGA-----FEGASGVNEIL   87 (220)
T ss_dssp             TEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTT-----TTTCTTCCEEE
T ss_pred             CEeEeCCCCcccCccCC-CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHH-----hCCCCCCCEEE
Confidence            47888888888888755 3456899999999886555555678999999999999999877643     88899999999


Q ss_pred             ecCCcCcccch-hhhCcCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCcccccccCCcccchhhhhcCCCCCEEE
Q 037941          120 FRNSHIEQLPE-EIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEVEGQNNASLAELNQLSRLTTLE  198 (308)
Q Consensus       120 l~~~~i~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~  198 (308)
                      +++|.++.++. .+..+++|+.|++++|. ++.++...+..+++|+.|++++|.+.+..       +..+..+++|+.|+
T Consensus        88 Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-------~~~~~~l~~L~~L~  159 (220)
T 2v70_A           88 LTSNRLENVQHKMFKGLESLKTLMLRSNR-ITCVGNDSFIGLSSVRLLSLYDNQITTVA-------PGAFDTLHSLSTLN  159 (220)
T ss_dssp             CCSSCCCCCCGGGGTTCSSCCEEECTTSC-CCCBCTTSSTTCTTCSEEECTTSCCCCBC-------TTTTTTCTTCCEEE
T ss_pred             CCCCccCccCHhHhcCCcCCCEEECCCCc-CCeECHhHcCCCccCCEEECCCCcCCEEC-------HHHhcCCCCCCEEE
Confidence            99999987664 48889999999999998 66665445888999999999999888433       25677888999999


Q ss_pred             eeeccC
Q 037941          199 MLILDA  204 (308)
Q Consensus       199 l~~~~~  204 (308)
                      +++|.+
T Consensus       160 L~~N~l  165 (220)
T 2v70_A          160 LLANPF  165 (220)
T ss_dssp             CCSCCE
T ss_pred             ecCcCC
Confidence            998864

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.73  E-value=5.4e-17  Score=136.72  Aligned_cols=162  Identities=17%  Similarity=0.188  Sum_probs=134.8

Q ss_pred             cchhhHhhhhcCCCCeeEEeecCCCCCCCCcCCCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCCCCC
Q 037941           25 SDLREVFEDLMQKDPIAISHPCRDIQELPEKLECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLG  104 (308)
Q Consensus        25 ~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~  104 (308)
                      ..+.+++.....+++++|++++|.+..++....+++|++|++++|.+++ ++.  +..+++|++|++++|.++.+|..  
T Consensus        29 ~~i~~~~~~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~-~~~--l~~l~~L~~L~L~~N~l~~l~~~--  103 (263)
T 1xeu_A           29 QSVTDLVSQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISD-LSP--LKDLTKLEELSVNRNRLKNLNGI--  103 (263)
T ss_dssp             SCTTSEECHHHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCC-CGG--GTTCSSCCEEECCSSCCSCCTTC--
T ss_pred             CCcccccchhhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccCC-Chh--hccCCCCCEEECCCCccCCcCcc--
Confidence            3344444344578999999999999998854499999999999999884 444  57899999999999999998874  


Q ss_pred             CcccccccccccEEeecCCcCcccchhhhCcCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCcccccccCCcccc
Q 037941          105 DVATVGVLKKLVIFSFRNSHIEQLPEEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEVEGQNNAS  184 (308)
Q Consensus       105 ~~~~l~~l~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~  184 (308)
                           .. ++|++|++++|.++.++. +..+++|+.|++++|. ++.++.  +..+++|+.|++++|.+.+.        
T Consensus       104 -----~~-~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~Ls~N~-i~~~~~--l~~l~~L~~L~L~~N~i~~~--------  165 (263)
T 1xeu_A          104 -----PS-ACLSRLFLDNNELRDTDS-LIHLKNLEILSIRNNK-LKSIVM--LGFLSKLEVLDLHGNEITNT--------  165 (263)
T ss_dssp             -----CC-SSCCEEECCSSCCSBSGG-GTTCTTCCEEECTTSC-CCBCGG--GGGCTTCCEEECTTSCCCBC--------
T ss_pred             -----cc-CcccEEEccCCccCCChh-hcCcccccEEECCCCc-CCCChH--HccCCCCCEEECCCCcCcch--------
Confidence                 33 999999999999998875 8999999999999998 777763  88999999999999998822        


Q ss_pred             hhhhhcCCCCCEEEeeeccCccccch
Q 037941          185 LAELNQLSRLTTLEMLILDAQVMPRE  210 (308)
Q Consensus       185 ~~~l~~l~~L~~L~l~~~~~~~~p~~  210 (308)
                       ..+..+++|+.|++++|.+...|..
T Consensus       166 -~~l~~l~~L~~L~l~~N~~~~~~~~  190 (263)
T 1xeu_A          166 -GGLTRLKKVNWIDLTGQKCVNEPVK  190 (263)
T ss_dssp             -TTSTTCCCCCEEEEEEEEEECCCEE
T ss_pred             -HHhccCCCCCEEeCCCCcccCCccc
Confidence             5678899999999999987666543

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.73  E-value=1.6e-18  Score=157.56  Aligned_cols=133  Identities=22%  Similarity=0.274  Sum_probs=70.9

Q ss_pred             cCCCCeeEEeecCCCC-----CCCCcC-CCCCccEEEecCCCCcCCCCchhhcCCC----CccEEEccCCCCC-----CC
Q 037941           35 MQKDPIAISHPCRDIQ-----ELPEKL-ECPKLKLFFLFSEKLSLVIPDLFFEGVP----SLQVLSLNGFHFP-----SL   99 (308)
Q Consensus        35 ~~~~l~~L~l~~~~~~-----~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~----~L~~L~l~~~~~~-----~l   99 (308)
                      ..+++++|++++|.+.     .++... .+++|++|++++|.++...+..++..+.    +|++|++++|.+.     .+
T Consensus        26 ~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l  105 (461)
T 1z7x_W           26 LLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVL  105 (461)
T ss_dssp             HHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred             hcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHH
Confidence            3556677777766664     233333 5667777777766665433334444454    5777777766665     23


Q ss_pred             CCCCCCcccccccccccEEeecCCcCccc-chhhh-----CcCCCCEEecCCCCCCCccC----cchhcCCCCCceEEcc
Q 037941          100 PSTLGDVATVGVLKKLVIFSFRNSHIEQL-PEEIG-----QLTRLKLLDLSTCSKLKSIR----PNVISNLPRLEELYMG  169 (308)
Q Consensus       100 p~~~~~~~~l~~l~~L~~L~l~~~~i~~l-~~~~~-----~l~~L~~L~l~~~~~~~~~~----~~~~~~l~~L~~L~l~  169 (308)
                      |..      +..+++|++|++++|.++.. +..+.     ..++|+.|++++|. ++...    ...+..+++|++|+++
T Consensus       106 ~~~------l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~L~  178 (461)
T 1z7x_W          106 SST------LRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCS-LSAASCEPLASVLRAKPDFKELTVS  178 (461)
T ss_dssp             HHH------TTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CBGGGHHHHHHHHHHCTTCCEEECC
T ss_pred             HHH------HccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCC-CCHHHHHHHHHHHhhCCCCCEEECc
Confidence            443      55566666666666665521 11111     13456666666665 33211    1113445566666666


Q ss_pred             CCccc
Q 037941          170 NSFTH  174 (308)
Q Consensus       170 ~~~~~  174 (308)
                      +|.+.
T Consensus       179 ~n~i~  183 (461)
T 1z7x_W          179 NNDIN  183 (461)
T ss_dssp             SSBCH
T ss_pred             CCCcc
Confidence            65544

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.72  E-value=1e-17  Score=145.98  Aligned_cols=240  Identities=13%  Similarity=0.097  Sum_probs=172.3

Q ss_pred             CCCCeeEEeecCCCCCCCCcC-CC--CCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCC--CCCCCCCccccc
Q 037941           36 QKDPIAISHPCRDIQELPEKL-EC--PKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPS--LPSTLGDVATVG  110 (308)
Q Consensus        36 ~~~l~~L~l~~~~~~~~~~~~-~~--~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--lp~~~~~~~~l~  110 (308)
                      ...+++++++++.+.  +... .+  ++++.+++.+|.+.+..+. + ..+++|++|++++|.+..  +|..      +.
T Consensus        46 ~~~~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~-~~~~~L~~L~L~~~~l~~~~~~~~------~~  115 (336)
T 2ast_B           46 ESLWQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFMDQPLAE-H-FSPFRVQHMDLSNSVIEVSTLHGI------LS  115 (336)
T ss_dssp             STTSSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEECSCCCS-C-CCCBCCCEEECTTCEECHHHHHHH------HT
T ss_pred             chhheeeccccccCC--HHHHHhhhhccceEEEcCCccccccchh-h-ccCCCCCEEEccCCCcCHHHHHHH------Hh
Confidence            456889999887764  2333 45  8999999999998866554 3 478999999999998873  6665      78


Q ss_pred             ccccccEEeecCCcCc-ccchhhhCcCCCCEEecCCCCCCCc--cCcchhcCCCCCceEEccCC-cccccccCCcccchh
Q 037941          111 VLKKLVIFSFRNSHIE-QLPEEIGQLTRLKLLDLSTCSKLKS--IRPNVISNLPRLEELYMGNS-FTHWEVEGQNNASLA  186 (308)
Q Consensus       111 ~l~~L~~L~l~~~~i~-~l~~~~~~l~~L~~L~l~~~~~~~~--~~~~~~~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~  186 (308)
                      .+++|++|++++|.++ ..+..+..+++|+.|++++|..++.  ++.. +..+++|++|++++| .+.+.      ....
T Consensus       116 ~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~-~~~~~~L~~L~l~~~~~l~~~------~~~~  188 (336)
T 2ast_B          116 QCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTL-LSSCSRLDELNLSWCFDFTEK------HVQV  188 (336)
T ss_dssp             TBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHH-HHHCTTCCEEECCCCTTCCHH------HHHH
T ss_pred             hCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHH-HhcCCCCCEEcCCCCCCcChH------HHHH
Confidence            8999999999999988 6778889999999999999943553  4443 778999999999999 77621      1245


Q ss_pred             hhhcCC-CCCEEEeeecc--C--ccccchhhc-cCCceeEeeccC-c----ccccCCCCcCceEEEeecCchhhhh---h
Q 037941          187 ELNQLS-RLTTLEMLILD--A--QVMPRELFS-LGLERNKIFLGD-V----WSWTGKYETSRTLKLKLDNRMYLEH---G  252 (308)
Q Consensus       187 ~l~~l~-~L~~L~l~~~~--~--~~~p~~~~~-~~L~~l~i~~~~-~----~~~~~~~~~L~~L~L~~~~~~~~~~---~  252 (308)
                      .+..++ +|++|++++|.  +  ..+|..+.. ++|+.|++..+. +    ......+++|+.|+++.|.... +.   .
T Consensus       189 ~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~~  267 (336)
T 2ast_B          189 AVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDII-PETLLE  267 (336)
T ss_dssp             HHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCC-GGGGGG
T ss_pred             HHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCC-HHHHHH
Confidence            678899 99999999984  3  345555443 889999987665 2    2245678899999998886332 22   2


Q ss_pred             HHHHhcccceeecCCccchhhhhhccCCCCC-CcccEEeccccccccccc
Q 037941          253 IKMLLRRTEDLHLDKLNGLQNVLHELDGEGF-PRLKHLLVQNASEILYIV  301 (308)
Q Consensus       253 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-~~L~~L~l~~c~~l~~i~  301 (308)
                      +.. +++|++|++++|  +.....    ..+ ..|+.|++.+| ++..+.
T Consensus       268 l~~-~~~L~~L~l~~~--i~~~~~----~~l~~~l~~L~l~~n-~l~~~~  309 (336)
T 2ast_B          268 LGE-IPTLKTLQVFGI--VPDGTL----QLLKEALPHLQINCS-HFTTIA  309 (336)
T ss_dssp             GGG-CTTCCEEECTTS--SCTTCH----HHHHHHSTTSEESCC-CSCCTT
T ss_pred             Hhc-CCCCCEEeccCc--cCHHHH----HHHHhhCcceEEecc-cCcccc
Confidence            333 589999999987  222111    111 23556666544 565544

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.72  E-value=1.2e-16  Score=131.76  Aligned_cols=146  Identities=23%  Similarity=0.253  Sum_probs=124.4

Q ss_pred             ecccchhhHhhhhcCCCCeeEEeecCCCCCCCC-cC-CCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCC
Q 037941           22 QIISDLREVFEDLMQKDPIAISHPCRDIQELPE-KL-ECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSL   99 (308)
Q Consensus        22 ~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l   99 (308)
                      +.+.++..+|. ...+++++|++++|.+..+++ .+ .+++|++|++++|.+. .++...|..+++|++|++++|.+..+
T Consensus        26 c~~~~l~~ip~-~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~-~i~~~~~~~l~~L~~L~Ls~N~l~~l  103 (229)
T 3e6j_A           26 CRSKRHASVPA-GIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLGTNQLTVL  103 (229)
T ss_dssp             CTTSCCSSCCS-CCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred             ccCCCcCccCC-CCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCC-CcChhhcccCCCcCEEECCCCcCCcc
Confidence            34566777773 456899999999999977744 44 8999999999999986 66666668899999999999999988


Q ss_pred             CCCCCCcccccccccccEEeecCCcCcccchhhhCcCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCcccc
Q 037941          100 PSTLGDVATVGVLKKLVIFSFRNSHIEQLPEEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHW  175 (308)
Q Consensus       100 p~~~~~~~~l~~l~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~  175 (308)
                      |...     +..+++|++|++++|.++.+|..+..+++|+.|++++|. ++.++...+..+++|+.|++++|.+..
T Consensus       104 ~~~~-----~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~c  173 (229)
T 3e6j_A          104 PSAV-----FDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQ-LKSIPHGAFDRLSSLTHAYLFGNPWDC  173 (229)
T ss_dssp             CTTT-----TTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred             ChhH-----hCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCc-CCccCHHHHhCCCCCCEEEeeCCCccC
Confidence            8874     788999999999999999999889999999999999998 778887668889999999999998873

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.72  E-value=7.6e-17  Score=132.13  Aligned_cols=147  Identities=19%  Similarity=0.286  Sum_probs=79.2

Q ss_pred             eEEeecCCCCCCCCcCCCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCC-CCCCCCcccccccccccEEe
Q 037941           41 AISHPCRDIQELPEKLECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSL-PSTLGDVATVGVLKKLVIFS  119 (308)
Q Consensus        41 ~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~~~~~~~l~~l~~L~~L~  119 (308)
                      .++.+++.+..+|.... +++++|++++|.++ .++...|..+++|++|++++|.+..+ |..      +..+++|++|+
T Consensus        15 ~v~c~~~~l~~iP~~l~-~~l~~L~l~~n~i~-~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~------~~~l~~L~~L~   86 (220)
T 2v9t_B           15 IVDCRGKGLTEIPTNLP-ETITEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQISELAPDA------FQGLRSLNSLV   86 (220)
T ss_dssp             EEECTTSCCSSCCSSCC-TTCCEEECCSSCCC-EECTTSSTTCTTCCEEECCSSCCCEECTTT------TTTCSSCCEEE
T ss_pred             EEEcCCCCcCcCCCccC-cCCCEEECCCCcCC-CcCHhHhhCCCCCCEEECCCCcCCCcCHHH------hhCCcCCCEEE
Confidence            45555555555554332 45666666666555 23333335566666666666666544 333      55566666666


Q ss_pred             ecCCcCcccchh-hhCcCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCcccccccCCcccchhhhhcCCCCCEEE
Q 037941          120 FRNSHIEQLPEE-IGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEVEGQNNASLAELNQLSRLTTLE  198 (308)
Q Consensus       120 l~~~~i~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~  198 (308)
                      +++|.++.+|.. +..+++|+.|++++|. ++.++...+..+++|+.|++++|.+.+..+       ..+..+++|+.|+
T Consensus        87 Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-------~~~~~l~~L~~L~  158 (220)
T 2v9t_B           87 LYGNKITELPKSLFEGLFSLQLLLLNANK-INCLRVDAFQDLHNLNLLSLYDNKLQTIAK-------GTFSPLRAIQTMH  158 (220)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCT-------TTTTTCTTCCEEE
T ss_pred             CCCCcCCccCHhHccCCCCCCEEECCCCC-CCEeCHHHcCCCCCCCEEECCCCcCCEECH-------HHHhCCCCCCEEE
Confidence            666666655543 3555666666666665 444443335556666666666665552221       2344555666666


Q ss_pred             eeecc
Q 037941          199 MLILD  203 (308)
Q Consensus       199 l~~~~  203 (308)
                      +++|.
T Consensus       159 L~~N~  163 (220)
T 2v9t_B          159 LAQNP  163 (220)
T ss_dssp             CCSSC
T ss_pred             eCCCC
Confidence            66554

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.72  E-value=6.7e-17  Score=132.48  Aligned_cols=147  Identities=23%  Similarity=0.282  Sum_probs=127.0

Q ss_pred             eecccchhhHhhhhcCCCCeeEEeecCCCCCCCCc-C-CCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCC
Q 037941           21 IQIISDLREVFEDLMQKDPIAISHPCRDIQELPEK-L-ECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPS   98 (308)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~   98 (308)
                      .+.+.++..+|. ...+++++|++++|.+..+++. + .+++|++|++++|.++...+..+ .++++|++|++++|.+..
T Consensus        17 ~c~~~~l~~iP~-~l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~-~~l~~L~~L~Ls~N~l~~   94 (220)
T 2v9t_B           17 DCRGKGLTEIPT-NLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAF-QGLRSLNSLVLYGNKITE   94 (220)
T ss_dssp             ECTTSCCSSCCS-SCCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTT-TTCSSCCEEECCSSCCCC
T ss_pred             EcCCCCcCcCCC-ccCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHh-hCCcCCCEEECCCCcCCc
Confidence            344677888884 3468999999999999888764 4 89999999999999985545554 799999999999999999


Q ss_pred             CCCCCCCcccccccccccEEeecCCcCccc-chhhhCcCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCcccc
Q 037941           99 LPSTLGDVATVGVLKKLVIFSFRNSHIEQL-PEEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHW  175 (308)
Q Consensus        99 lp~~~~~~~~l~~l~~L~~L~l~~~~i~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~  175 (308)
                      +|...     +..+++|++|++++|.++.+ |..+..+++|+.|++++|. ++.++...+..+++|+.|++++|.+..
T Consensus        95 l~~~~-----f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~~c  166 (220)
T 2v9t_B           95 LPKSL-----FEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNK-LQTIAKGTFSPLRAIQTMHLAQNPFIC  166 (220)
T ss_dssp             CCTTT-----TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             cCHhH-----ccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCc-CCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence            99885     78999999999999999966 4678999999999999999 778887768899999999999998873

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.70  E-value=5e-16  Score=126.03  Aligned_cols=150  Identities=21%  Similarity=0.312  Sum_probs=121.6

Q ss_pred             eeEEeecCCCCCCCCcCCCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCCCCCCcccccccccccEEe
Q 037941           40 IAISHPCRDIQELPEKLECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKKLVIFS  119 (308)
Q Consensus        40 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~~~~l~~l~~L~~L~  119 (308)
                      +.++..++.+..+|... .+++++|++++|.++ .++...+..+++|++|++++|.+..+|...     +..+++|++|+
T Consensus        10 ~~v~c~~~~l~~~p~~~-~~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-----~~~l~~L~~L~   82 (208)
T 2o6s_A           10 TTVECYSQGRTSVPTGI-PAQTTYLDLETNSLK-SLPNGVFDELTSLTQLYLGGNKLQSLPNGV-----FNKLTSLTYLN   82 (208)
T ss_dssp             TEEECCSSCCSSCCSCC-CTTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTT-----TTTCTTCCEEE
T ss_pred             CEEEecCCCccCCCCCC-CCCCcEEEcCCCccC-cCChhhhcccccCcEEECCCCccCccChhh-----cCCCCCcCEEE
Confidence            45677777777777554 568999999999987 556655678999999999999999888764     78899999999


Q ss_pred             ecCCcCcccchh-hhCcCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCcccccccCCcccchhhhhcCCCCCEEE
Q 037941          120 FRNSHIEQLPEE-IGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEVEGQNNASLAELNQLSRLTTLE  198 (308)
Q Consensus       120 l~~~~i~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~  198 (308)
                      +++|.++.+|.. +..+++|+.|++++|. ++.++...+..+++|++|++++|.+.+.++       ..+..+++|+.|+
T Consensus        83 Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~-------~~~~~l~~L~~L~  154 (208)
T 2o6s_A           83 LSTNQLQSLPNGVFDKLTQLKELALNTNQ-LQSLPDGVFDKLTQLKDLRLYQNQLKSVPD-------GVFDRLTSLQYIW  154 (208)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCT-------TTTTTCTTCCEEE
T ss_pred             CCCCcCCccCHhHhcCccCCCEEEcCCCc-CcccCHhHhccCCcCCEEECCCCccceeCH-------HHhccCCCccEEE
Confidence            999999977754 6889999999999998 777777667889999999999998873322       3467788999999


Q ss_pred             eeeccC
Q 037941          199 MLILDA  204 (308)
Q Consensus       199 l~~~~~  204 (308)
                      +++|.+
T Consensus       155 l~~N~~  160 (208)
T 2o6s_A          155 LHDNPW  160 (208)
T ss_dssp             CCSCCB
T ss_pred             ecCCCe
Confidence            998853

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.70  E-value=1.7e-17  Score=155.17  Aligned_cols=189  Identities=18%  Similarity=0.222  Sum_probs=152.0

Q ss_pred             CCCCeeEEeecCCCCCCCCcCCCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCCCCCCcccccccccc
Q 037941           36 QKDPIAISHPCRDIQELPEKLECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKKL  115 (308)
Q Consensus        36 ~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~~~~l~~l~~L  115 (308)
                      +..+..+.+..+.+.++.....+++|+.|++++|.+. .++.  +..+++|+.|++++|.+..+|+       +..+++|
T Consensus        20 l~~l~~l~l~~~~i~~~~~~~~L~~L~~L~l~~n~i~-~l~~--l~~l~~L~~L~Ls~N~l~~~~~-------l~~l~~L   89 (605)
T 1m9s_A           20 FAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIK-SVQG--IQYLPNVTKLFLNGNKLTDIKP-------LTNLKNL   89 (605)
T ss_dssp             HHHHHHHHTTCSCTTSEECHHHHTTCCCCBCTTCCCC-CCTT--GGGCTTCCEEECTTSCCCCCGG-------GGGCTTC
T ss_pred             HHHHHHHhccCCCcccccchhcCCCCCEEECcCCCCC-CChH--HccCCCCCEEEeeCCCCCCChh-------hccCCCC
Confidence            4445556666666666655558999999999999987 4443  4789999999999999998887       7899999


Q ss_pred             cEEeecCCcCcccchhhhCcCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCcccccccCCcccchhhhhcCCCCC
Q 037941          116 VIFSFRNSHIEQLPEEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEVEGQNNASLAELNQLSRLT  195 (308)
Q Consensus       116 ~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~  195 (308)
                      ++|++++|.++.+| .+..+++|+.|++++|. +..++.  +..+++|+.|++++|.+.+         +..+..+++|+
T Consensus        90 ~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~-l~~l~~--l~~l~~L~~L~Ls~N~l~~---------l~~l~~l~~L~  156 (605)
T 1m9s_A           90 GWLFLDENKIKDLS-SLKDLKKLKSLSLEHNG-ISDING--LVHLPQLESLYLGNNKITD---------ITVLSRLTKLD  156 (605)
T ss_dssp             CEEECCSSCCCCCT-TSTTCTTCCEEECTTSC-CCCCGG--GGGCTTCSEEECCSSCCCC---------CGGGGSCTTCS
T ss_pred             CEEECcCCCCCCCh-hhccCCCCCEEEecCCC-CCCCcc--ccCCCccCEEECCCCccCC---------chhhcccCCCC
Confidence            99999999999887 48999999999999998 677654  8899999999999999882         25788999999


Q ss_pred             EEEeeeccCccccchhhccCCceeEeeccCccc--ccCCCCcCceEEEeecCch
Q 037941          196 TLEMLILDAQVMPRELFSLGLERNKIFLGDVWS--WTGKYETSRTLKLKLDNRM  247 (308)
Q Consensus       196 ~L~l~~~~~~~~p~~~~~~~L~~l~i~~~~~~~--~~~~~~~L~~L~L~~~~~~  247 (308)
                      .|++++|.+..++.....++|+.|++..+.+..  .+..+++|+.|+|+.|...
T Consensus       157 ~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~L~~N~l~  210 (605)
T 1m9s_A          157 TLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQECL  210 (605)
T ss_dssp             EEECCSSCCCCCGGGTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEECCSEEEE
T ss_pred             EEECcCCcCCCchhhccCCCCCEEECcCCCCCCChHHccCCCCCEEEccCCcCc
Confidence            999999998888763333888888887766543  3556778888888776544

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.70  E-value=6.3e-17  Score=142.58  Aligned_cols=143  Identities=21%  Similarity=0.298  Sum_probs=67.3

Q ss_pred             ccchhhHhhhhcCCCCeeEEeecCCCCCCCCcC---CCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCC
Q 037941           24 ISDLREVFEDLMQKDPIAISHPCRDIQELPEKL---ECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLP  100 (308)
Q Consensus        24 ~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp  100 (308)
                      +.++..+|. .....+++|++++|.+..++...   .+++|++|++++|.++. ++...|.++++|++|++++|.+..+|
T Consensus        27 ~~~l~~iP~-~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~-i~~~~~~~l~~L~~L~Ls~N~l~~~~  104 (361)
T 2xot_A           27 KQQLPNVPQ-SLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNF-ISSEAFVPVPNLRYLDLSSNHLHTLD  104 (361)
T ss_dssp             SSCCSSCCS-SCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCE-ECTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred             CCCcCccCc-cCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCc-cChhhccCCCCCCEEECCCCcCCcCC
Confidence            344444442 23344555555555554443322   44555555555555442 22222345555555555555555444


Q ss_pred             CCCCCcccccccccccEEeecCCcCccc-chhhhCcCCCCEEecCCCCCCCccCcchh---cCCCCCceEEccCCccc
Q 037941          101 STLGDVATVGVLKKLVIFSFRNSHIEQL-PEEIGQLTRLKLLDLSTCSKLKSIRPNVI---SNLPRLEELYMGNSFTH  174 (308)
Q Consensus       101 ~~~~~~~~l~~l~~L~~L~l~~~~i~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~---~~l~~L~~L~l~~~~~~  174 (308)
                      ...     +..+++|++|++++|.++.+ |..+..+++|+.|++++|. ++.+|...+   ..+++|+.|++++|.+.
T Consensus       105 ~~~-----~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~~l~~L~~L~L~~N~l~  176 (361)
T 2xot_A          105 EFL-----FSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQ-ISRFPVELIKDGNKLPKLMLLDLSSNKLK  176 (361)
T ss_dssp             TTT-----TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCSCCGGGTC----CTTCCEEECCSSCCC
T ss_pred             HHH-----hCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCc-CCeeCHHHhcCcccCCcCCEEECCCCCCC
Confidence            432     44555555555555555533 3344555555555555554 444444433   33455555555555544

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.69  E-value=3.7e-17  Score=144.14  Aligned_cols=231  Identities=10%  Similarity=0.111  Sum_probs=157.5

Q ss_pred             hcCCCCeeEEeecCCCCCCCC-----cC-CCC-CccEEEecCCCCcCCCCchhhcCC-----CCccEEEccCCCCCCCCC
Q 037941           34 LMQKDPIAISHPCRDIQELPE-----KL-ECP-KLKLFFLFSEKLSLVIPDLFFEGV-----PSLQVLSLNGFHFPSLPS  101 (308)
Q Consensus        34 ~~~~~l~~L~l~~~~~~~~~~-----~~-~~~-~L~~L~l~~~~~~~~~~~~~~~~l-----~~L~~L~l~~~~~~~lp~  101 (308)
                      ...+++++|++++|.+...+.     .+ .++ +|++|++++|.++...+..+ ..+     ++|++|++++|.++..+.
T Consensus        19 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l-~~~l~~~~~~L~~L~Ls~n~l~~~~~   97 (362)
T 3goz_A           19 SIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDEL-VQILAAIPANVTSLNLSGNFLSYKSS   97 (362)
T ss_dssp             TSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHH-HHHHHTSCTTCCEEECCSSCGGGSCH
T ss_pred             hCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHH-HHHHhccCCCccEEECcCCcCChHHH
Confidence            345669999999999977663     33 787 89999999999886555444 233     899999999999885443


Q ss_pred             CCCCc-cccccc-ccccEEeecCCcCcccch-h----hhC-cCCCCEEecCCCCCCCcc-----CcchhcCCC-CCceEE
Q 037941          102 TLGDV-ATVGVL-KKLVIFSFRNSHIEQLPE-E----IGQ-LTRLKLLDLSTCSKLKSI-----RPNVISNLP-RLEELY  167 (308)
Q Consensus       102 ~~~~~-~~l~~l-~~L~~L~l~~~~i~~l~~-~----~~~-l~~L~~L~l~~~~~~~~~-----~~~~~~~l~-~L~~L~  167 (308)
                      ..  + ..+..+ ++|++|++++|.++..+. .    +.. .++|+.|++++|. ++..     +.. +..++ +|++|+
T Consensus        98 ~~--l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~-l~~~~~~L~~L~  173 (362)
T 3goz_A           98 DE--LVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGND-LGIKSSDELIQI-LAAIPANVNSLN  173 (362)
T ss_dssp             HH--HHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSC-GGGSCHHHHHHH-HHTSCTTCCEEE
T ss_pred             HH--HHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCc-CCHHHHHHHHHH-HhcCCccccEee
Confidence            21  0 002333 799999999999885543 3    334 3699999999998 5532     222 34555 999999


Q ss_pred             ccCCcccccccCCcccchhhhhcC-CCCCEEEeeeccCcc-----ccchhhc--cCCceeEeeccCccc--------ccC
Q 037941          168 MGNSFTHWEVEGQNNASLAELNQL-SRLTTLEMLILDAQV-----MPRELFS--LGLERNKIFLGDVWS--------WTG  231 (308)
Q Consensus       168 l~~~~~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~-----~p~~~~~--~~L~~l~i~~~~~~~--------~~~  231 (308)
                      +++|.+.+...   ......+..+ ++|++|++++|.++.     ++..+..  .+|+.|++..+.+..        ...
T Consensus       174 Ls~n~l~~~~~---~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~  250 (362)
T 3goz_A          174 LRGNNLASKNC---AELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKD  250 (362)
T ss_dssp             CTTSCGGGSCH---HHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTT
T ss_pred             ecCCCCchhhH---HHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHh
Confidence            99999873322   1222345566 599999999999877     5665554  589999988776544        246


Q ss_pred             CCCcCceEEEeecCchhh----hhhHHH---HhcccceeecCCccchhh
Q 037941          232 KYETSRTLKLKLDNRMYL----EHGIKM---LLRRTEDLHLDKLNGLQN  273 (308)
Q Consensus       232 ~~~~L~~L~L~~~~~~~~----~~~~~~---~~~~L~~L~l~~~~~~~~  273 (308)
                      .++.|+.|+|+.|.....    ...+..   .+++|+.|++++ +.+..
T Consensus       251 ~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~-N~l~~  298 (362)
T 3goz_A          251 SLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNG-KEIHP  298 (362)
T ss_dssp             TTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTS-CBCCG
T ss_pred             cCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCC-CcCCC
Confidence            678899999988862211    111111   136677888877 44443

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.69  E-value=2.6e-17  Score=138.60  Aligned_cols=169  Identities=16%  Similarity=0.095  Sum_probs=130.1

Q ss_pred             hhcCCCCeeEEeecCCCCCCCCcCCCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCCCCCCccccccc
Q 037941           33 DLMQKDPIAISHPCRDIQELPEKLECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVL  112 (308)
Q Consensus        33 ~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~~~~l~~l  112 (308)
                      .....++..+++..+.+.+++....+++|++|++++|.++ .++ . +..+++|++|++++|.+..+|+       +..+
T Consensus        15 d~~l~~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~-~l~-~-l~~l~~L~~L~L~~N~i~~~~~-------l~~l   84 (263)
T 1xeu_A           15 DPGLANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQ-SLA-G-MQFFTNLKELHLSHNQISDLSP-------LKDL   84 (263)
T ss_dssp             SHHHHHHHHHHHTCSCTTSEECHHHHTTCSEEECTTSCCC-CCT-T-GGGCTTCCEEECCSSCCCCCGG-------GTTC
T ss_pred             CHHHHHHHHHHhcCCCcccccchhhcCcCcEEECcCCCcc-cch-H-HhhCCCCCEEECCCCccCCChh-------hccC
Confidence            3345667778888888888774448999999999999887 455 2 4688999999999999988876       6788


Q ss_pred             ccccEEeecCCcCcccchhhhCcCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCcccccccCCcccchhhhhcCC
Q 037941          113 KKLVIFSFRNSHIEQLPEEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEVEGQNNASLAELNQLS  192 (308)
Q Consensus       113 ~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~  192 (308)
                      ++|++|++++|.++.+|....  ++|+.|++++|. ++.++.  +..+++|+.|++++|.+.+         ...+..++
T Consensus        85 ~~L~~L~L~~N~l~~l~~~~~--~~L~~L~L~~N~-l~~~~~--l~~l~~L~~L~Ls~N~i~~---------~~~l~~l~  150 (263)
T 1xeu_A           85 TKLEELSVNRNRLKNLNGIPS--ACLSRLFLDNNE-LRDTDS--LIHLKNLEILSIRNNKLKS---------IVMLGFLS  150 (263)
T ss_dssp             SSCCEEECCSSCCSCCTTCCC--SSCCEEECCSSC-CSBSGG--GTTCTTCCEEECTTSCCCB---------CGGGGGCT
T ss_pred             CCCCEEECCCCccCCcCcccc--CcccEEEccCCc-cCCChh--hcCcccccEEECCCCcCCC---------ChHHccCC
Confidence            999999999999988876333  889999999998 677764  7889999999999998882         23677889


Q ss_pred             CCCEEEeeeccCccccchhhccCCceeEeeccC
Q 037941          193 RLTTLEMLILDAQVMPRELFSLGLERNKIFLGD  225 (308)
Q Consensus       193 ~L~~L~l~~~~~~~~p~~~~~~~L~~l~i~~~~  225 (308)
                      +|+.|++++|.++.++.....++|+.|++..+.
T Consensus       151 ~L~~L~L~~N~i~~~~~l~~l~~L~~L~l~~N~  183 (263)
T 1xeu_A          151 KLEVLDLHGNEITNTGGLTRLKKVNWIDLTGQK  183 (263)
T ss_dssp             TCCEEECTTSCCCBCTTSTTCCCCCEEEEEEEE
T ss_pred             CCCEEECCCCcCcchHHhccCCCCCEEeCCCCc
Confidence            999999999987766222222555665555443

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.69  E-value=8.7e-16  Score=142.34  Aligned_cols=177  Identities=17%  Similarity=0.160  Sum_probs=142.7

Q ss_pred             CCCCeeEEeecCCCCCCCCcCCCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCCCCCCcccccccccc
Q 037941           36 QKDPIAISHPCRDIQELPEKLECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKKL  115 (308)
Q Consensus        36 ~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~~~~l~~l~~L  115 (308)
                      ..+++.|++++|.+..+|... +++|++|++++|.++ .+|    ..+++|++|++++|.++.+|. +      ..  +|
T Consensus        58 ~~~L~~L~Ls~n~L~~lp~~l-~~~L~~L~Ls~N~l~-~ip----~~l~~L~~L~Ls~N~l~~ip~-l------~~--~L  122 (571)
T 3cvr_A           58 INQFSELQLNRLNLSSLPDNL-PPQITVLEITQNALI-SLP----ELPASLEYLDACDNRLSTLPE-L------PA--SL  122 (571)
T ss_dssp             HTTCSEEECCSSCCSCCCSCC-CTTCSEEECCSSCCS-CCC----CCCTTCCEEECCSSCCSCCCC-C------CT--TC
T ss_pred             cCCccEEEeCCCCCCccCHhH-cCCCCEEECcCCCCc-ccc----cccCCCCEEEccCCCCCCcch-h------hc--CC
Confidence            358999999999998888766 489999999999988 677    357999999999999999888 4      22  89


Q ss_pred             cEEeecCCcCcccchhhhCcCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCcccccccCCcccchhhhhcCCCCC
Q 037941          116 VIFSFRNSHIEQLPEEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEVEGQNNASLAELNQLSRLT  195 (308)
Q Consensus       116 ~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~  195 (308)
                      ++|++++|.++.+|.   .+++|+.|++++|. ++.+|.    .+++|+.|++++|.+.+.        +. +.  ++|+
T Consensus       123 ~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~-l~~lp~----~l~~L~~L~Ls~N~L~~l--------p~-l~--~~L~  183 (571)
T 3cvr_A          123 KHLDVDNNQLTMLPE---LPALLEYINADNNQ-LTMLPE----LPTSLEVLSVRNNQLTFL--------PE-LP--ESLE  183 (571)
T ss_dssp             CEEECCSSCCSCCCC---CCTTCCEEECCSSC-CSCCCC----CCTTCCEEECCSSCCSCC--------CC-CC--TTCC
T ss_pred             CEEECCCCcCCCCCC---cCccccEEeCCCCc-cCcCCC----cCCCcCEEECCCCCCCCc--------ch-hh--CCCC
Confidence            999999999999888   68999999999998 777876    478999999999998832        22 33  8999


Q ss_pred             EEEeeeccCccccchhhccCC-------ceeEeeccCcc---cccCCCCcCceEEEeecCchh
Q 037941          196 TLEMLILDAQVMPRELFSLGL-------ERNKIFLGDVW---SWTGKYETSRTLKLKLDNRMY  248 (308)
Q Consensus       196 ~L~l~~~~~~~~p~~~~~~~L-------~~l~i~~~~~~---~~~~~~~~L~~L~L~~~~~~~  248 (308)
                      .|++++|.++.+|. +. .+|       +.|++..+.+.   .....+++|+.|+|+.|....
T Consensus       184 ~L~Ls~N~L~~lp~-~~-~~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~  244 (571)
T 3cvr_A          184 ALDVSTNLLESLPA-VP-VRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSS  244 (571)
T ss_dssp             EEECCSSCCSSCCC-CC---------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCH
T ss_pred             EEECcCCCCCchhh-HH-HhhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCC
Confidence            99999999999988 43 367       88887766543   334457788888888876544

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.69  E-value=2.5e-16  Score=138.73  Aligned_cols=174  Identities=17%  Similarity=0.201  Sum_probs=135.4

Q ss_pred             eeEEeecCCCCCCCCcCCCCCccEEEecCCCCcCCCCchhhc-CCCCccEEEccCCCCCCCCCCCCCcccccccccccEE
Q 037941           40 IAISHPCRDIQELPEKLECPKLKLFFLFSEKLSLVIPDLFFE-GVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKKLVIF  118 (308)
Q Consensus        40 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~lp~~~~~~~~l~~l~~L~~L  118 (308)
                      +.++.+++.+..+|... .+.++.|++++|.++. ++...+. .+++|++|++++|.+..+++..     +..+++|++|
T Consensus        21 ~~l~c~~~~l~~iP~~~-~~~l~~L~Ls~N~l~~-l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~-----~~~l~~L~~L   93 (361)
T 2xot_A           21 NILSCSKQQLPNVPQSL-PSYTALLDLSHNNLSR-LRAEWTPTRLTNLHSLLLSHNHLNFISSEA-----FVPVPNLRYL   93 (361)
T ss_dssp             TEEECCSSCCSSCCSSC-CTTCSEEECCSSCCCE-ECTTSSSSCCTTCCEEECCSSCCCEECTTT-----TTTCTTCCEE
T ss_pred             CEEEeCCCCcCccCccC-CCCCCEEECCCCCCCc-cChhhhhhcccccCEEECCCCcCCccChhh-----ccCCCCCCEE
Confidence            57889999998888755 3468999999999884 4455455 8999999999999999887654     8999999999


Q ss_pred             eecCCcCcccch-hhhCcCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCcccccccCCcccchhhhhcCCCCCEE
Q 037941          119 SFRNSHIEQLPE-EIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEVEGQNNASLAELNQLSRLTTL  197 (308)
Q Consensus       119 ~l~~~~i~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L  197 (308)
                      ++++|.++.++. .+..+++|+.|++++|. +..++...+..+++|+.|++++|.+...+.    .....+..+++|+.|
T Consensus        94 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~----~~~~~~~~l~~L~~L  168 (361)
T 2xot_A           94 DLSSNHLHTLDEFLFSDLQALEVLLLYNNH-IVVVDRNAFEDMAQLQKLYLSQNQISRFPV----ELIKDGNKLPKLMLL  168 (361)
T ss_dssp             ECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCSCCG----GGTC----CTTCCEE
T ss_pred             ECCCCcCCcCCHHHhCCCcCCCEEECCCCc-ccEECHHHhCCcccCCEEECCCCcCCeeCH----HHhcCcccCCcCCEE
Confidence            999999997765 58899999999999999 677765568999999999999999884332    111222678999999


Q ss_pred             EeeeccCccccchhhc--cC--CceeEeeccC
Q 037941          198 EMLILDAQVMPRELFS--LG--LERNKIFLGD  225 (308)
Q Consensus       198 ~l~~~~~~~~p~~~~~--~~--L~~l~i~~~~  225 (308)
                      ++++|.++.+|.....  +.  ++.+++..+.
T Consensus       169 ~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~  200 (361)
T 2xot_A          169 DLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNP  200 (361)
T ss_dssp             ECCSSCCCCCCHHHHHHSCHHHHTTEECCSSC
T ss_pred             ECCCCCCCccCHHHhhhccHhhcceEEecCCC
Confidence            9999999988865432  22  3555555443

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.67  E-value=2.8e-16  Score=128.71  Aligned_cols=147  Identities=16%  Similarity=0.231  Sum_probs=123.9

Q ss_pred             ecccchhhHhhhhcCCCCeeEEeecCCCCCCCC-c-C-CCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCC
Q 037941           22 QIISDLREVFEDLMQKDPIAISHPCRDIQELPE-K-L-ECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPS   98 (308)
Q Consensus        22 ~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~-~-~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~   98 (308)
                      +.+..+..+|. .....+++|++++|.+..+++ . + .+++|++|++++|.++. ++...|.++++|++|++++|.+..
T Consensus        18 ~s~n~l~~iP~-~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~-i~~~~~~~l~~L~~L~Ls~N~l~~   95 (220)
T 2v70_A           18 CSNQKLNKIPE-HIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITD-IEEGAFEGASGVNEILLTSNRLEN   95 (220)
T ss_dssp             CCSSCCSSCCS-CCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCE-ECTTTTTTCTTCCEEECCSSCCCC
T ss_pred             eCCCCcccCcc-CCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCE-ECHHHhCCCCCCCEEECCCCccCc
Confidence            44567777774 456788999999999987743 2 4 89999999999999884 444445899999999999999998


Q ss_pred             CCCCCCCcccccccccccEEeecCCcCccc-chhhhCcCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCccccc
Q 037941           99 LPSTLGDVATVGVLKKLVIFSFRNSHIEQL-PEEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWE  176 (308)
Q Consensus        99 lp~~~~~~~~l~~l~~L~~L~l~~~~i~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~  176 (308)
                      +|+..     +..+++|++|++++|.++.+ |..+..+++|+.|++++|. ++.++...+..+++|+.|++++|.+...
T Consensus        96 ~~~~~-----~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~c~  168 (220)
T 2v70_A           96 VQHKM-----FKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQ-ITTVAPGAFDTLHSLSTLNLLANPFNCN  168 (220)
T ss_dssp             CCGGG-----GTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSC-CCCBCTTTTTTCTTCCEEECCSCCEECS
T ss_pred             cCHhH-----hcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCc-CCEECHHHhcCCCCCCEEEecCcCCcCC
Confidence            88765     88999999999999999966 5779999999999999998 6667555589999999999999998843

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.67  E-value=3.5e-17  Score=144.27  Aligned_cols=242  Identities=12%  Similarity=0.035  Sum_probs=129.5

Q ss_pred             EEeecCCCCCC-CCcC-CCCCccEEEecCCCCcCCCCc---hhhcCCC-CccEEEccCCCCCCC-CCCCCCccccccc--
Q 037941           42 ISHPCRDIQEL-PEKL-ECPKLKLFFLFSEKLSLVIPD---LFFEGVP-SLQVLSLNGFHFPSL-PSTLGDVATVGVL--  112 (308)
Q Consensus        42 L~l~~~~~~~~-~~~~-~~~~L~~L~l~~~~~~~~~~~---~~~~~l~-~L~~L~l~~~~~~~l-p~~~~~~~~l~~l--  112 (308)
                      ..++.+.+... |... ..++|++|++++|.++...+.   ..+.+++ +|++|++++|.++.. +..      +..+  
T Consensus         3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~------l~~~l~   76 (362)
T 3goz_A            3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDE------LVQILA   76 (362)
T ss_dssp             EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHH------HHHHHH
T ss_pred             cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHH------HHHHHh
Confidence            34555555432 3333 334477777777776633321   2335666 677777777777643 222      4443  


Q ss_pred             ---ccccEEeecCCcCcccc-hh----hhCc-CCCCEEecCCCCCCCccCcchh----cC-CCCCceEEccCCccccccc
Q 037941          113 ---KKLVIFSFRNSHIEQLP-EE----IGQL-TRLKLLDLSTCSKLKSIRPNVI----SN-LPRLEELYMGNSFTHWEVE  178 (308)
Q Consensus       113 ---~~L~~L~l~~~~i~~l~-~~----~~~l-~~L~~L~l~~~~~~~~~~~~~~----~~-l~~L~~L~l~~~~~~~~~~  178 (308)
                         ++|++|++++|.++..+ ..    +..+ ++|+.|++++|. ++..+...+    .. .++|++|++++|.+.+...
T Consensus        77 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~  155 (362)
T 3goz_A           77 AIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSS  155 (362)
T ss_dssp             TSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCH
T ss_pred             ccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHH
Confidence               67777777777776333 22    3344 677777777777 555554322    22 3577777777777662211


Q ss_pred             CCcccchhhhhcCC-CCCEEEeeeccCccccch-h----hc--cCCceeEeeccCcccc--------cCC-CCcCceEEE
Q 037941          179 GQNNASLAELNQLS-RLTTLEMLILDAQVMPRE-L----FS--LGLERNKIFLGDVWSW--------TGK-YETSRTLKL  241 (308)
Q Consensus       179 ~~~~~~~~~l~~l~-~L~~L~l~~~~~~~~p~~-~----~~--~~L~~l~i~~~~~~~~--------~~~-~~~L~~L~L  241 (308)
                         ......+..++ +|++|++++|.++..... +    ..  .+|+.|++..+.+...        ... .++|+.|+|
T Consensus       156 ---~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~L  232 (362)
T 3goz_A          156 ---DELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNL  232 (362)
T ss_dssp             ---HHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEEC
T ss_pred             ---HHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEEC
Confidence               12223444554 777777777776544431 1    11  3677777766654441        112 246777777


Q ss_pred             eecCchhhh-hhHH---HHhcccceeecCCcc--c-----hhhhhhccCCCCCCcccEEeccccc
Q 037941          242 KLDNRMYLE-HGIK---MLLRRTEDLHLDKLN--G-----LQNVLHELDGEGFPRLKHLLVQNAS  295 (308)
Q Consensus       242 ~~~~~~~~~-~~~~---~~~~~L~~L~l~~~~--~-----~~~~~~~~~~~~~~~L~~L~l~~c~  295 (308)
                      +.|...... ..+.   ..+++|++|+++++.  .     +..+...  ...+++|+.|++++++
T Consensus       233 s~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~--~~~l~~L~~LdL~~N~  295 (362)
T 3goz_A          233 CLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAA--FPNIQKIILVDKNGKE  295 (362)
T ss_dssp             CSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTT--STTCCEEEEECTTSCB
T ss_pred             cCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHH--hccCCceEEEecCCCc
Confidence            776543321 1111   123667777777643  0     1111111  1345667777777663

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.66  E-value=5.7e-16  Score=121.34  Aligned_cols=139  Identities=24%  Similarity=0.173  Sum_probs=75.2

Q ss_pred             CCccEEEecCCCCc-CCCCchhhcCCCCccEEEccCCCCCCCCCCCCCcccccccccccEEeecCCcCcc-cchhhhCcC
Q 037941           59 PKLKLFFLFSEKLS-LVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKKLVIFSFRNSHIEQ-LPEEIGQLT  136 (308)
Q Consensus        59 ~~L~~L~l~~~~~~-~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~~~~l~~l~~L~~L~l~~~~i~~-l~~~~~~l~  136 (308)
                      +++++|++++|.++ +.+|.. +..+++|++|++++|.+..+ ..      +..+++|++|++++|.++. +|..+..++
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~-~~~l~~L~~L~l~~n~l~~~-~~------~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~   95 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGL-TAEFVNLEFLSLINVGLISV-SN------LPKLPKLKKLELSENRIFGGLDMLAEKLP   95 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSC-CGGGGGCCEEEEESSCCCCC-SS------CCCCSSCCEEEEESCCCCSCCCHHHHHCT
T ss_pred             ccCCEEECCCCCCChhhHHHH-HHhCCCCCEEeCcCCCCCCh-hh------hccCCCCCEEECcCCcCchHHHHHHhhCC
Confidence            34555555555544 333433 24555566666666655554 33      5556666666666666654 555555566


Q ss_pred             CCCEEecCCCCCCCccCc-chhcCCCCCceEEccCCcccccccCCcccchhhhhcCCCCCEEEeeeccCccccch
Q 037941          137 RLKLLDLSTCSKLKSIRP-NVISNLPRLEELYMGNSFTHWEVEGQNNASLAELNQLSRLTTLEMLILDAQVMPRE  210 (308)
Q Consensus       137 ~L~~L~l~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~  210 (308)
                      +|+.|++++|. ++.++. ..+..+++|++|++++|.+.+.+.    .....+..+++|+.|++++|...++|..
T Consensus        96 ~L~~L~Ls~N~-l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~----~~~~~~~~l~~L~~L~l~~n~~~~~~~~  165 (168)
T 2ell_A           96 NLTHLNLSGNK-LKDISTLEPLKKLECLKSLDLFNCEVTNLND----YRESVFKLLPQLTYLDGYDREDQEAPDS  165 (168)
T ss_dssp             TCCEEECBSSS-CCSSGGGGGGSSCSCCCEEECCSSGGGTSTT----HHHHHHTTCSSCCEETTEETTSCBCCSS
T ss_pred             CCCEEeccCCc-cCcchhHHHHhcCCCCCEEEeeCCcCcchHH----HHHHHHHhCccCcEecCCCCChhhcccc
Confidence            66666666665 444442 225566666666666666552111    0012455666666666666666555543

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.66  E-value=1.3e-15  Score=141.10  Aligned_cols=180  Identities=19%  Similarity=0.148  Sum_probs=145.8

Q ss_pred             CCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCCCCCCcccccccccccEEeecCCcCcccchhhhCcCCC
Q 037941           59 PKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKKLVIFSFRNSHIEQLPEEIGQLTRL  138 (308)
Q Consensus        59 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~~~~l~~l~~L~~L~l~~~~i~~l~~~~~~l~~L  138 (308)
                      .+++.|++++|.+++ +|..+   +++|++|++++|.++.+| .      +  +++|++|++++|.++.+|. +..  +|
T Consensus        59 ~~L~~L~Ls~n~L~~-lp~~l---~~~L~~L~Ls~N~l~~ip-~------~--l~~L~~L~Ls~N~l~~ip~-l~~--~L  122 (571)
T 3cvr_A           59 NQFSELQLNRLNLSS-LPDNL---PPQITVLEITQNALISLP-E------L--PASLEYLDACDNRLSTLPE-LPA--SL  122 (571)
T ss_dssp             TTCSEEECCSSCCSC-CCSCC---CTTCSEEECCSSCCSCCC-C------C--CTTCCEEECCSSCCSCCCC-CCT--TC
T ss_pred             CCccEEEeCCCCCCc-cCHhH---cCCCCEEECcCCCCcccc-c------c--cCCCCEEEccCCCCCCcch-hhc--CC
Confidence            389999999999884 77755   378999999999999999 5      2  6899999999999999988 655  99


Q ss_pred             CEEecCCCCCCCccCcchhcCCCCCceEEccCCcccccccCCcccchhhhhcCCCCCEEEeeeccCccccchhhccCCce
Q 037941          139 KLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEVEGQNNASLAELNQLSRLTTLEMLILDAQVMPRELFSLGLER  218 (308)
Q Consensus       139 ~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~~~~~~L~~  218 (308)
                      +.|++++|. ++.+|.    .+++|+.|++++|.+.+.+        .   .+++|+.|++++|.++.+|. +. .+|+.
T Consensus       123 ~~L~Ls~N~-l~~lp~----~l~~L~~L~Ls~N~l~~lp--------~---~l~~L~~L~Ls~N~L~~lp~-l~-~~L~~  184 (571)
T 3cvr_A          123 KHLDVDNNQ-LTMLPE----LPALLEYINADNNQLTMLP--------E---LPTSLEVLSVRNNQLTFLPE-LP-ESLEA  184 (571)
T ss_dssp             CEEECCSSC-CSCCCC----CCTTCCEEECCSSCCSCCC--------C---CCTTCCEEECCSSCCSCCCC-CC-TTCCE
T ss_pred             CEEECCCCc-CCCCCC----cCccccEEeCCCCccCcCC--------C---cCCCcCEEECCCCCCCCcch-hh-CCCCE
Confidence            999999998 777886    5799999999999988321        1   57899999999999999998 44 99999


Q ss_pred             eEeeccCcccccCCCCcC-------ceEEEeecCchhhhhhHHHHhcccceeecCCccchhh
Q 037941          219 NKIFLGDVWSWTGKYETS-------RTLKLKLDNRMYLEHGIKMLLRRTEDLHLDKLNGLQN  273 (308)
Q Consensus       219 l~i~~~~~~~~~~~~~~L-------~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  273 (308)
                      |++..+.+..+..-..+|       +.|+|+.|.....+..+.. +++|+.|++++++....
T Consensus       185 L~Ls~N~L~~lp~~~~~L~~~~~~L~~L~Ls~N~l~~lp~~l~~-l~~L~~L~L~~N~l~~~  245 (571)
T 3cvr_A          185 LDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRITHIPENILS-LDPTCTIILEDNPLSSR  245 (571)
T ss_dssp             EECCSSCCSSCCCCC--------CCEEEECCSSCCCCCCGGGGG-SCTTEEEECCSSSCCHH
T ss_pred             EECcCCCCCchhhHHHhhhcccccceEEecCCCcceecCHHHhc-CCCCCEEEeeCCcCCCc
Confidence            999888765543311266       8999999987777776766 59999999998544333

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.66  E-value=7.2e-18  Score=153.22  Aligned_cols=248  Identities=13%  Similarity=0.020  Sum_probs=155.7

Q ss_pred             hcCCCCeeEEeecCCCCCC-----CCc-C-CCCCccEEEecCCCCcCCCC---chhhcCCCCccEEEccCCCCCCC-CCC
Q 037941           34 LMQKDPIAISHPCRDIQEL-----PEK-L-ECPKLKLFFLFSEKLSLVIP---DLFFEGVPSLQVLSLNGFHFPSL-PST  102 (308)
Q Consensus        34 ~~~~~l~~L~l~~~~~~~~-----~~~-~-~~~~L~~L~l~~~~~~~~~~---~~~~~~l~~L~~L~l~~~~~~~l-p~~  102 (308)
                      ...+++++|++++|.+...     ... . ..++|++|++++|.++....   ...+..+++|++|++++|.+... +..
T Consensus       110 ~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~  189 (461)
T 1z7x_W          110 RTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRV  189 (461)
T ss_dssp             TSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHH
T ss_pred             ccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHH
Confidence            4577899999999887321     111 1 35679999999988775322   12235678999999998887632 111


Q ss_pred             CCCccccc-----ccccccEEeecCCcCcc-----cchhhhCcCCCCEEecCCCCCCCccC-----cchhcCCCCCceEE
Q 037941          103 LGDVATVG-----VLKKLVIFSFRNSHIEQ-----LPEEIGQLTRLKLLDLSTCSKLKSIR-----PNVISNLPRLEELY  167 (308)
Q Consensus       103 ~~~~~~l~-----~l~~L~~L~l~~~~i~~-----l~~~~~~l~~L~~L~l~~~~~~~~~~-----~~~~~~l~~L~~L~  167 (308)
                            +.     ..++|++|++++|.++.     ++..+..+++|+.|++++|. ++...     ......+++|++|+
T Consensus       190 ------l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~~~~~~~~L~~L~  262 (461)
T 1z7x_W          190 ------LCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNK-LGDVGMAELCPGLLHPSSRLRTLW  262 (461)
T ss_dssp             ------HHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEE
T ss_pred             ------HHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCc-CChHHHHHHHHHHhcCCCCceEEE
Confidence                  21     24588888888888774     56677788888888888886 44321     22233578888888


Q ss_pred             ccCCcccccccCCcccchhhhhcCCCCCEEEeeeccCcccc-----chhhc--cCCceeEeeccCccc--------ccCC
Q 037941          168 MGNSFTHWEVEGQNNASLAELNQLSRLTTLEMLILDAQVMP-----RELFS--LGLERNKIFLGDVWS--------WTGK  232 (308)
Q Consensus       168 l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p-----~~~~~--~~L~~l~i~~~~~~~--------~~~~  232 (308)
                      +++|.+.....   ...+..+..+++|++|++++|.++...     ..+..  ++|+.|++..+.+..        +...
T Consensus       263 L~~n~l~~~~~---~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~  339 (461)
T 1z7x_W          263 IWECGITAKGC---GDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQ  339 (461)
T ss_dssp             CTTSCCCHHHH---HHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHH
T ss_pred             CcCCCCCHHHH---HHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhh
Confidence            88887772211   113455667888888888888764322     21111  478888776665432        2345


Q ss_pred             CCcCceEEEeecCchhh-hhhHHHH----hcccceeecCCccchhh-----hhhccCCCCCCcccEEecccc
Q 037941          233 YETSRTLKLKLDNRMYL-EHGIKML----LRRTEDLHLDKLNGLQN-----VLHELDGEGFPRLKHLLVQNA  294 (308)
Q Consensus       233 ~~~L~~L~L~~~~~~~~-~~~~~~~----~~~L~~L~l~~~~~~~~-----~~~~~~~~~~~~L~~L~l~~c  294 (308)
                      +++|+.|+|+.|..... ...+...    .++|++|++++| .++.     ++..+  ..+++|++|++++|
T Consensus       340 ~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~i~~~~~~~l~~~l--~~~~~L~~L~l~~N  408 (461)
T 1z7x_W          340 NRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADC-DVSDSSCSSLAATL--LANHSLRELDLSNN  408 (461)
T ss_dssp             CSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHH--HHCCCCCEEECCSS
T ss_pred             CCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCC-CCChhhHHHHHHHH--HhCCCccEEECCCC
Confidence            57888888887754332 1112111    257888888875 3332     22222  33677888888777

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.66  E-value=6.7e-16  Score=124.27  Aligned_cols=147  Identities=18%  Similarity=0.196  Sum_probs=106.8

Q ss_pred             CCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCCCCCCcccccccccccEEeecCCcCc-ccchhhhCc
Q 037941           57 ECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKKLVIFSFRNSHIE-QLPEEIGQL  135 (308)
Q Consensus        57 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~~~~l~~l~~L~~L~l~~~~i~-~l~~~~~~l  135 (308)
                      .+++|++|++++|.++ .++ . +..+++|++|++++|.+..++.       +..+++|++|++++|.++ ..+..++.+
T Consensus        42 ~l~~L~~L~l~~n~i~-~l~-~-l~~l~~L~~L~l~~n~~~~~~~-------l~~l~~L~~L~l~~n~l~~~~~~~l~~l  111 (197)
T 4ezg_A           42 QMNSLTYITLANINVT-DLT-G-IEYAHNIKDLTINNIHATNYNP-------ISGLSNLERLRIMGKDVTSDKIPNLSGL  111 (197)
T ss_dssp             HHHTCCEEEEESSCCS-CCT-T-GGGCTTCSEEEEESCCCSCCGG-------GTTCTTCCEEEEECTTCBGGGSCCCTTC
T ss_pred             hcCCccEEeccCCCcc-ChH-H-HhcCCCCCEEEccCCCCCcchh-------hhcCCCCCEEEeECCccCcccChhhcCC
Confidence            6788888999888877 555 2 4678889999998887766653       778888999999888888 466778888


Q ss_pred             CCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCc-ccccccCCcccchhhhhcCCCCCEEEeeeccCccccchhhcc
Q 037941          136 TRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSF-THWEVEGQNNASLAELNQLSRLTTLEMLILDAQVMPRELFSL  214 (308)
Q Consensus       136 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~~~~~  214 (308)
                      ++|+.|++++|......+.. ++.+++|++|++++|. +.        . +..+..+++|+.|++++|.++.++.....+
T Consensus       112 ~~L~~L~Ls~n~i~~~~~~~-l~~l~~L~~L~L~~n~~i~--------~-~~~l~~l~~L~~L~l~~n~i~~~~~l~~l~  181 (197)
T 4ezg_A          112 TSLTLLDISHSAHDDSILTK-INTLPKVNSIDLSYNGAIT--------D-IMPLKTLPELKSLNIQFDGVHDYRGIEDFP  181 (197)
T ss_dssp             TTCCEEECCSSBCBGGGHHH-HTTCSSCCEEECCSCTBCC--------C-CGGGGGCSSCCEEECTTBCCCCCTTGGGCS
T ss_pred             CCCCEEEecCCccCcHhHHH-HhhCCCCCEEEccCCCCcc--------c-cHhhcCCCCCCEEECCCCCCcChHHhccCC
Confidence            88899998888833334444 7888888888888887 55        1 235778888888888888776665222224


Q ss_pred             CCceeEeec
Q 037941          215 GLERNKIFL  223 (308)
Q Consensus       215 ~L~~l~i~~  223 (308)
                      +|+.|++..
T Consensus       182 ~L~~L~l~~  190 (197)
T 4ezg_A          182 KLNQLYAFS  190 (197)
T ss_dssp             SCCEEEECB
T ss_pred             CCCEEEeeC
Confidence            444444433

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.64  E-value=7.5e-16  Score=120.68  Aligned_cols=134  Identities=19%  Similarity=0.189  Sum_probs=116.1

Q ss_pred             hcCCCCeeEEeecCCCC--CCCCcC-CCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCC-CCCCCCCcccc
Q 037941           34 LMQKDPIAISHPCRDIQ--ELPEKL-ECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPS-LPSTLGDVATV  109 (308)
Q Consensus        34 ~~~~~l~~L~l~~~~~~--~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-lp~~~~~~~~l  109 (308)
                      ..++++++|++++|.+.  .+|..+ .+++|++|++++|.++..   ..+..+++|++|++++|.+.. +|..      +
T Consensus        21 ~~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~N~l~~~~~~~------~   91 (168)
T 2ell_A           21 RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV---SNLPKLPKLKKLELSENRIFGGLDML------A   91 (168)
T ss_dssp             SCTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC---SSCCCCSSCCEEEEESCCCCSCCCHH------H
T ss_pred             CCcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh---hhhccCCCCCEEECcCCcCchHHHHH------H
Confidence            34688999999999997  888887 999999999999998754   335789999999999999997 5554      6


Q ss_pred             cccccccEEeecCCcCcccc--hhhhCcCCCCEEecCCCCCCCccCc---chhcCCCCCceEEccCCcccccc
Q 037941          110 GVLKKLVIFSFRNSHIEQLP--EEIGQLTRLKLLDLSTCSKLKSIRP---NVISNLPRLEELYMGNSFTHWEV  177 (308)
Q Consensus       110 ~~l~~L~~L~l~~~~i~~l~--~~~~~l~~L~~L~l~~~~~~~~~~~---~~~~~l~~L~~L~l~~~~~~~~~  177 (308)
                      ..+++|++|++++|.++.+|  ..+..+++|+.|++++|. +..+|.   ..+..+++|+.|++++|.+...+
T Consensus        92 ~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~  163 (168)
T 2ell_A           92 EKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDREDQEAP  163 (168)
T ss_dssp             HHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEETTSCBCC
T ss_pred             hhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCCChhhcc
Confidence            77999999999999999876  679999999999999998 777776   45889999999999999877443

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.59  E-value=1.1e-14  Score=116.67  Aligned_cols=129  Identities=16%  Similarity=0.274  Sum_probs=99.8

Q ss_pred             eeEEeecCCCCCCCCcCCCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCCCCCCcccccccccccEEe
Q 037941           40 IAISHPCRDIQELPEKLECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKKLVIFS  119 (308)
Q Consensus        40 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~~~~l~~l~~L~~L~  119 (308)
                      +.++++++.+.++|.... .++++|++++|.+++..+..++..+++|++|++++|.++.+++..     +..+++|++|+
T Consensus        11 ~~l~~s~~~l~~ip~~~~-~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-----~~~l~~L~~L~   84 (192)
T 1w8a_A           11 TTVDCTGRGLKEIPRDIP-LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNA-----FEGASHIQELQ   84 (192)
T ss_dssp             TEEECTTSCCSSCCSCCC-TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTT-----TTTCTTCCEEE
T ss_pred             CEEEcCCCCcCcCccCCC-CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhH-----cCCcccCCEEE
Confidence            578888888888887552 388899999988875444444578899999999999988774432     88888999999


Q ss_pred             ecCCcCcccch-hhhCcCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCcccc
Q 037941          120 FRNSHIEQLPE-EIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHW  175 (308)
Q Consensus       120 l~~~~i~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~  175 (308)
                      +++|.++.++. .+..+++|+.|++++|. ++.++...+..+++|++|++++|.+.+
T Consensus        85 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~c  140 (192)
T 1w8a_A           85 LGENKIKEISNKMFLGLHQLKTLNLYDNQ-ISCVMPGSFEHLNSLTSLNLASNPFNC  140 (192)
T ss_dssp             CCSCCCCEECSSSSTTCTTCCEEECCSSC-CCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred             CCCCcCCccCHHHhcCCCCCCEEECCCCc-CCeeCHHHhhcCCCCCEEEeCCCCccC
Confidence            99998886654 47788889999999888 555544447888888889888888773

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.59  E-value=9e-16  Score=146.79  Aligned_cols=152  Identities=18%  Similarity=0.195  Sum_probs=75.8

Q ss_pred             CCCeeEEeecCCCCCCCCcC-CCCCccEEEecC-----CCCcCCCCchhhcCCCCccEEEccCCCCCCCCCCCCCccccc
Q 037941           37 KDPIAISHPCRDIQELPEKL-ECPKLKLFFLFS-----EKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVG  110 (308)
Q Consensus        37 ~~l~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~-----~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~~~~l~  110 (308)
                      +.++.|.+..+.+...+... ...+|+.+.+..     |.+.  ++...+..+..|++|+|++|.+..+|..      +.
T Consensus       173 ~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~--~~~~~~~~l~~L~~L~Ls~n~l~~l~~~------~~  244 (727)
T 4b8c_D          173 PLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMV--MPKDSKYDDQLWHALDLSNLQIFNISAN------IF  244 (727)
T ss_dssp             ---------------------------------------------------CCCCCCEEECTTSCCSCCCGG------GG
T ss_pred             CccceEEeeCCCCCcchhhHhhcCccCcccccCcccccccee--cChhhhccCCCCcEEECCCCCCCCCChh------hc
Confidence            44666777666665544433 333333333322     2222  2333345677777777777777777766      55


Q ss_pred             ccccccEEeecCCcCcccchhhhCcCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCcccccccCCcccchhhhhc
Q 037941          111 VLKKLVIFSFRNSHIEQLPEEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEVEGQNNASLAELNQ  190 (308)
Q Consensus       111 ~l~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~  190 (308)
                      .+++|++|+|++|.++.+|..++.+++|+.|++++|. ++.+|.. ++.+++|+.|++++|.+.        ..+..+..
T Consensus       245 ~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~-~~~l~~L~~L~L~~N~l~--------~lp~~~~~  314 (727)
T 4b8c_D          245 KYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNR-LTSLPAE-LGSCFQLKYFYFFDNMVT--------TLPWEFGN  314 (727)
T ss_dssp             GCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSC-CSSCCSS-GGGGTTCSEEECCSSCCC--------CCCSSTTS
T ss_pred             CCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCc-CCccChh-hcCCCCCCEEECCCCCCC--------ccChhhhc
Confidence            6777777777777777777767777777777777776 5566665 667777777777777665        23345667


Q ss_pred             CCCCCEEEeeeccCcc
Q 037941          191 LSRLTTLEMLILDAQV  206 (308)
Q Consensus       191 l~~L~~L~l~~~~~~~  206 (308)
                      +++|+.|++++|.+..
T Consensus       315 l~~L~~L~L~~N~l~~  330 (727)
T 4b8c_D          315 LCNLQFLGVEGNPLEK  330 (727)
T ss_dssp             CTTCCCEECTTSCCCS
T ss_pred             CCCccEEeCCCCccCC
Confidence            7777777777776654

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.59  E-value=2e-15  Score=115.78  Aligned_cols=129  Identities=19%  Similarity=0.183  Sum_probs=69.6

Q ss_pred             CCccEEEecCCCCc-CCCCchhhcCCCCccEEEccCCCCCCCCCCCCCcccccccccccEEeecCCcCcc-cchhhhCcC
Q 037941           59 PKLKLFFLFSEKLS-LVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKKLVIFSFRNSHIEQ-LPEEIGQLT  136 (308)
Q Consensus        59 ~~L~~L~l~~~~~~-~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~~~~l~~l~~L~~L~l~~~~i~~-l~~~~~~l~  136 (308)
                      ++++.|++++|.++ +.+|..+ ..+++|++|++++|.+..+ ..      ++.+++|++|++++|.++. +|..+..++
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~-~~l~~L~~L~l~~n~l~~~-~~------~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~   88 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLT-DEFEELEFLSTINVGLTSI-AN------LPKLNKLKKLELSDNRVSGGLEVLAEKCP   88 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCC-TTCTTCCEEECTTSCCCCC-TT------CCCCTTCCEEECCSSCCCSCTHHHHHHCT
T ss_pred             ccCeEEEccCCcCChhHHHHHH-hhcCCCcEEECcCCCCCCc-hh------hhcCCCCCEEECCCCcccchHHHHhhhCC
Confidence            34555555555544 3344322 4556666666666665555 22      5566666666666666664 555555566


Q ss_pred             CCCEEecCCCCCCCccCc-chhcCCCCCceEEccCCcccccccCCcccchhhhhcCCCCCEEEee
Q 037941          137 RLKLLDLSTCSKLKSIRP-NVISNLPRLEELYMGNSFTHWEVEGQNNASLAELNQLSRLTTLEML  200 (308)
Q Consensus       137 ~L~~L~l~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~  200 (308)
                      +|+.|++++|. ++.++. ..++.+++|++|++++|.+.+.++    .....+..+++|+.|+++
T Consensus        89 ~L~~L~ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~----~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           89 NLTHLNLSGNK-IKDLSTIEPLKKLENLKSLDLFNCEVTNLND----YRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             TCCEEECTTSC-CCSHHHHGGGGGCTTCCEEECTTCGGGGSTT----HHHHHHHHCTTCCEETTB
T ss_pred             CCCEEECCCCc-CCChHHHHHHhhCCCCCEEeCcCCcccchHH----HHHHHHHHCCCcccccCC
Confidence            66666666665 444431 225666666666666666552211    001245566666666554

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.58  E-value=3.2e-14  Score=112.31  Aligned_cols=129  Identities=26%  Similarity=0.388  Sum_probs=100.4

Q ss_pred             CeeEEeecCCCCCCCCcCCCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCCCCCCcccccccccccEE
Q 037941           39 PIAISHPCRDIQELPEKLECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKKLVIF  118 (308)
Q Consensus        39 l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~~~~l~~l~~L~~L  118 (308)
                      .+.++++++.+..+|... .+++++|++++|.++ .++...+..+++|++|++++|.+..+|+..     +..+++|++|
T Consensus         9 ~~~l~~~~~~l~~~p~~~-~~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-----~~~l~~L~~L   81 (177)
T 2o6r_A            9 GTEIRCNSKGLTSVPTGI-PSSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSQNQIQSLPDGV-----FDKLTKLTIL   81 (177)
T ss_dssp             TTEEECCSSCCSSCCTTC-CTTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTT-----TTTCTTCCEE
T ss_pred             CCEEEecCCCCccCCCCC-CCCCcEEEeCCCccc-EeCHHHhcCcccccEEECCCCcceEeChhH-----ccCCCccCEE
Confidence            356777888887777544 468888888888877 455555578888888888888888887764     6788888888


Q ss_pred             eecCCcCcccchh-hhCcCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCcccc
Q 037941          119 SFRNSHIEQLPEE-IGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHW  175 (308)
Q Consensus       119 ~l~~~~i~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~  175 (308)
                      ++++|.++.+|.. +..+++|+.|++++|. ++.+|...+..+++|++|++++|.+.+
T Consensus        82 ~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~~  138 (177)
T 2o6r_A           82 YLHENKLQSLPNGVFDKLTQLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNPWDC  138 (177)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             ECCCCCccccCHHHhhCCcccCEEECcCCc-ceEeCHHHhcCCcccCEEEecCCCeec
Confidence            8888888877654 6778888888888887 677777666778888888888888773

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.58  E-value=5.4e-15  Score=113.38  Aligned_cols=124  Identities=21%  Similarity=0.249  Sum_probs=99.1

Q ss_pred             CCCCeeEEeecCCCC--CCCCcC-CCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCC-CCCCCCCcccccc
Q 037941           36 QKDPIAISHPCRDIQ--ELPEKL-ECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPS-LPSTLGDVATVGV  111 (308)
Q Consensus        36 ~~~l~~L~l~~~~~~--~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-lp~~~~~~~~l~~  111 (308)
                      .+++++|++++|.+.  .+|..+ .+++|++|++++|.+++.   ..+..+++|++|++++|.+.. +|..      ++.
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~n~i~~~~~~~------~~~   86 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI---ANLPKLNKLKKLELSDNRVSGGLEVL------AEK   86 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC---TTCCCCTTCCEEECCSSCCCSCTHHH------HHH
T ss_pred             CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc---hhhhcCCCCCEEECCCCcccchHHHH------hhh
Confidence            567888999988886  777776 888999999998887744   334788889999999998886 6654      667


Q ss_pred             cccccEEeecCCcCcccc--hhhhCcCCCCEEecCCCCCCCccCc---chhcCCCCCceEEcc
Q 037941          112 LKKLVIFSFRNSHIEQLP--EEIGQLTRLKLLDLSTCSKLKSIRP---NVISNLPRLEELYMG  169 (308)
Q Consensus       112 l~~L~~L~l~~~~i~~l~--~~~~~l~~L~~L~l~~~~~~~~~~~---~~~~~l~~L~~L~l~  169 (308)
                      +++|++|++++|.++.++  ..++.+++|+.|++++|. ++..+.   ..+..+++|+.|+++
T Consensus        87 l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           87 CPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCE-VTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             CTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCG-GGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             CCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCc-ccchHHHHHHHHHHCCCcccccCC
Confidence            888999999999888765  668888899999998887 666665   457788888888875

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.58  E-value=3.1e-16  Score=146.83  Aligned_cols=10  Identities=10%  Similarity=0.115  Sum_probs=6.3

Q ss_pred             CCcccEEecc
Q 037941          283 FPRLKHLLVQ  292 (308)
Q Consensus       283 ~~~L~~L~l~  292 (308)
                      +++|+.|++.
T Consensus       402 ~~~L~~L~l~  411 (592)
T 3ogk_B          402 LKNLCDFRLV  411 (592)
T ss_dssp             CCSCCEEEEE
T ss_pred             CCCCcEEEEe
Confidence            5566666665

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.58  E-value=2.1e-15  Score=119.08  Aligned_cols=107  Identities=16%  Similarity=0.214  Sum_probs=47.6

Q ss_pred             CccEEEccCCCCCCCCCCCCCcccccccccccEEeecCCcCcccchhh-hCcCCCCEEecCCCCCCCccCc-chhcCCCC
Q 037941           85 SLQVLSLNGFHFPSLPSTLGDVATVGVLKKLVIFSFRNSHIEQLPEEI-GQLTRLKLLDLSTCSKLKSIRP-NVISNLPR  162 (308)
Q Consensus        85 ~L~~L~l~~~~~~~lp~~~~~~~~l~~l~~L~~L~l~~~~i~~l~~~~-~~l~~L~~L~l~~~~~~~~~~~-~~~~~l~~  162 (308)
                      +|++|++++|.++.+ ..      +..+++|++|++++|.++.+|..+ ..+++|+.|++++|. ++.+|. ..+..+++
T Consensus        43 ~L~~L~Ls~N~l~~~-~~------l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~l~~l~~  114 (176)
T 1a9n_A           43 QFDAIDFSDNEIRKL-DG------FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNS-LVELGDLDPLASLKS  114 (176)
T ss_dssp             CCSEEECCSSCCCEE-CC------CCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCC-CCCGGGGGGGGGCTT
T ss_pred             CCCEEECCCCCCCcc-cc------cccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCc-CCcchhhHhhhcCCC
Confidence            444444444444443 22      444455555555555544444322 444555555555544 344443 11444555


Q ss_pred             CceEEccCCcccccccCCcccchhhhhcCCCCCEEEeeecc
Q 037941          163 LEELYMGNSFTHWEVEGQNNASLAELNQLSRLTTLEMLILD  203 (308)
Q Consensus       163 L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  203 (308)
                      |+.|++++|.+...+.    .....+..+++|+.|+++.|.
T Consensus       115 L~~L~l~~N~i~~~~~----~~~~~~~~l~~L~~Ld~~~n~  151 (176)
T 1a9n_A          115 LTYLCILRNPVTNKKH----YRLYVIYKVPQVRVLDFQKVK  151 (176)
T ss_dssp             CCEEECCSSGGGGSTT----HHHHHHHHCTTCSEETTEECC
T ss_pred             CCEEEecCCCCCCcHh----HHHHHHHHCCccceeCCCcCC
Confidence            5555555554441110    000124455555555555554

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.57  E-value=3.5e-14  Score=113.80  Aligned_cols=127  Identities=14%  Similarity=0.311  Sum_probs=103.9

Q ss_pred             eeEEeecCCCCCCCCcCCCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCCCCCCcccccccccccEEe
Q 037941           40 IAISHPCRDIQELPEKLECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKKLVIFS  119 (308)
Q Consensus        40 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~~~~l~~l~~L~~L~  119 (308)
                      +.++++++.+..+|... .+++++|++++|.++ .+|.. +.++++|++|++++|.++.+++..     +..+++|++|+
T Consensus        13 ~~l~~~~~~l~~ip~~~-~~~l~~L~L~~n~i~-~ip~~-~~~l~~L~~L~Ls~N~i~~i~~~~-----f~~l~~L~~L~   84 (193)
T 2wfh_A           13 TVVRCSNKGLKVLPKGI-PRDVTELYLDGNQFT-LVPKE-LSNYKHLTLIDLSNNRISTLSNQS-----FSNMTQLLTLI   84 (193)
T ss_dssp             TEEECTTSCCSSCCSCC-CTTCCEEECCSSCCC-SCCGG-GGGCTTCCEEECCSSCCCCCCTTT-----TTTCTTCCEEE
T ss_pred             CEEEcCCCCCCcCCCCC-CCCCCEEECCCCcCc-hhHHH-hhcccCCCEEECCCCcCCEeCHhH-----ccCCCCCCEEE
Confidence            46888888888888655 368899999998887 66644 478999999999999999887654     88889999999


Q ss_pred             ecCCcCcccch-hhhCcCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCcccc
Q 037941          120 FRNSHIEQLPE-EIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHW  175 (308)
Q Consensus       120 l~~~~i~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~  175 (308)
                      +++|.++.++. .+..+++|+.|++++|. ++.+|...+..+++|+.|++++|.+..
T Consensus        85 Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~~C  140 (193)
T 2wfh_A           85 LSYNRLRCIPPRTFDGLKSLRLLSLHGND-ISVVPEGAFNDLSALSHLAIGANPLYC  140 (193)
T ss_dssp             CCSSCCCBCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             CCCCccCEeCHHHhCCCCCCCEEECCCCC-CCeeChhhhhcCccccEEEeCCCCeec
Confidence            99999887664 58888999999999988 778887767888899999999888763

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.55  E-value=6.9e-15  Score=137.66  Aligned_cols=57  Identities=9%  Similarity=0.115  Sum_probs=39.8

Q ss_pred             cCCCCeeEEeecCCCCCC-----CCcC-CCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccC
Q 037941           35 MQKDPIAISHPCRDIQEL-----PEKL-ECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNG   93 (308)
Q Consensus        35 ~~~~l~~L~l~~~~~~~~-----~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~   93 (308)
                      ..+++++|++++|.+..+     +... .+++|++|++++|.+.+ ++. .+..+++|+.|+++.
T Consensus       190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~-~~~~~~~L~~L~l~~  252 (592)
T 3ogk_B          190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVG-FFKAAANLEEFCGGS  252 (592)
T ss_dssp             HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHH-HHHHCTTCCEEEECB
T ss_pred             cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHH-HHhhhhHHHhhcccc
Confidence            368889999988887532     3333 78889999998887663 443 345677777777764

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.53  E-value=3.1e-14  Score=112.32  Aligned_cols=132  Identities=14%  Similarity=0.118  Sum_probs=107.6

Q ss_pred             hcCCCCeeEEeecCCCCCCCCcCC-CCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCCCCCCccccccc
Q 037941           34 LMQKDPIAISHPCRDIQELPEKLE-CPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVL  112 (308)
Q Consensus        34 ~~~~~l~~L~l~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~~~~l~~l  112 (308)
                      ....++++|++++|.+..++.... .++|++|++++|.+++.  . .+..+++|++|++++|.+..+|+.+     +..+
T Consensus        16 ~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~--~-~l~~l~~L~~L~Ls~N~l~~~~~~~-----~~~l   87 (176)
T 1a9n_A           16 TNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL--D-GFPLLRRLKTLLVNNNRICRIGEGL-----DQAL   87 (176)
T ss_dssp             ECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE--C-CCCCCSSCCEEECCSSCCCEECSCH-----HHHC
T ss_pred             CCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc--c-ccccCCCCCEEECCCCcccccCcch-----hhcC
Confidence            346788999999999988876554 44999999999988743  2 2478899999999999999888773     4888


Q ss_pred             ccccEEeecCCcCcccch--hhhCcCCCCEEecCCCCCCCccCcc---hhcCCCCCceEEccCCccc
Q 037941          113 KKLVIFSFRNSHIEQLPE--EIGQLTRLKLLDLSTCSKLKSIRPN---VISNLPRLEELYMGNSFTH  174 (308)
Q Consensus       113 ~~L~~L~l~~~~i~~l~~--~~~~l~~L~~L~l~~~~~~~~~~~~---~~~~l~~L~~L~l~~~~~~  174 (308)
                      ++|++|++++|.++.+|.  .+..+++|+.|++++|. +..+|..   .+..+++|+.|+++.|...
T Consensus        88 ~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A           88 PDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             TTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             CCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence            999999999999988886  78888999999999988 6677764   4778899999999888765

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.52  E-value=6.8e-14  Score=111.99  Aligned_cols=128  Identities=19%  Similarity=0.222  Sum_probs=105.2

Q ss_pred             ccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCC-CCCCcccccccccccEEeecCCcCccc-chhhhCcCCC
Q 037941           61 LKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPS-TLGDVATVGVLKKLVIFSFRNSHIEQL-PEEIGQLTRL  138 (308)
Q Consensus        61 L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~~~~~~~l~~l~~L~~L~l~~~~i~~l-~~~~~~l~~L  138 (308)
                      .++++++++.++ .+|..++   .++++|++++|.+..++. ..     ++.+++|++|++++|.++.+ |..+..+++|
T Consensus        10 ~~~l~~s~~~l~-~ip~~~~---~~l~~L~l~~n~i~~~~~~~~-----~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L   80 (192)
T 1w8a_A           10 GTTVDCTGRGLK-EIPRDIP---LHTTELLLNDNELGRISSDGL-----FGRLPHLVKLELKRNQLTGIEPNAFEGASHI   80 (192)
T ss_dssp             TTEEECTTSCCS-SCCSCCC---TTCSEEECCSCCCCSBCCSCS-----GGGCTTCCEEECCSSCCCCBCTTTTTTCTTC
T ss_pred             CCEEEcCCCCcC-cCccCCC---CCCCEEECCCCcCCccCCccc-----cccCCCCCEEECCCCCCCCcCHhHcCCcccC
Confidence            378899998885 6776553   389999999999998775 33     78899999999999999966 6779999999


Q ss_pred             CEEecCCCCCCCccCcchhcCCCCCceEEccCCcccccccCCcccchhhhhcCCCCCEEEeeeccCc
Q 037941          139 KLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEVEGQNNASLAELNQLSRLTTLEMLILDAQ  205 (308)
Q Consensus       139 ~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  205 (308)
                      +.|++++|. ++.++...+..+++|+.|++++|.+.+..+       ..+..+++|+.|++++|.+.
T Consensus        81 ~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-------~~~~~l~~L~~L~L~~N~l~  139 (192)
T 1w8a_A           81 QELQLGENK-IKEISNKMFLGLHQLKTLNLYDNQISCVMP-------GSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             CEEECCSCC-CCEECSSSSTTCTTCCEEECCSSCCCEECT-------TSSTTCTTCCEEECTTCCBC
T ss_pred             CEEECCCCc-CCccCHHHhcCCCCCCEEECCCCcCCeeCH-------HHhhcCCCCCEEEeCCCCcc
Confidence            999999998 777776668889999999999999884433       56778899999999998653

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.51  E-value=2.1e-15  Score=141.20  Aligned_cols=43  Identities=7%  Similarity=-0.011  Sum_probs=23.2

Q ss_pred             cccceeecCCccchhhhhhccCCCCCCcccEEecc-----ccccccccc
Q 037941          258 RRTEDLHLDKLNGLQNVLHELDGEGFPRLKHLLVQ-----NASEILYIV  301 (308)
Q Consensus       258 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~-----~c~~l~~i~  301 (308)
                      ++|++|.+ +|+.++..........+++|+.|++.     +|..+...|
T Consensus       372 ~~L~~L~~-~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~  419 (594)
T 2p1m_B          372 PKLESVLY-FCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEP  419 (594)
T ss_dssp             TTCCEEEE-EESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCC
T ss_pred             hhHHHHHH-hcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCc
Confidence            55666643 23444433222222346788888888     566766443

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.49  E-value=9.4e-15  Score=136.76  Aligned_cols=63  Identities=10%  Similarity=0.042  Sum_probs=37.6

Q ss_pred             CCcCceEEEeecCchhh-hhhHHHHhcccceeecCCccchhhhhhccCCCCCCcccEEecccccc
Q 037941          233 YETSRTLKLKLDNRMYL-EHGIKMLLRRTEDLHLDKLNGLQNVLHELDGEGFPRLKHLLVQNASE  296 (308)
Q Consensus       233 ~~~L~~L~L~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~  296 (308)
                      +++|+.|+|+.|..... ...+..-+++|++|++++|+. +..........+++|+.|++++|+.
T Consensus       455 ~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~-~~~~~~~~~~~l~~L~~L~l~~~~~  518 (594)
T 2p1m_B          455 AKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPF-GDKALLANASKLETMRSLWMSSCSV  518 (594)
T ss_dssp             CTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSC-CHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred             chhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCC-cHHHHHHHHHhCCCCCEEeeeCCCC
Confidence            56777777777654221 111212258888888888665 3333222235578888888888854

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.49  E-value=3e-13  Score=108.28  Aligned_cols=124  Identities=24%  Similarity=0.308  Sum_probs=75.0

Q ss_pred             cEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCCCCCCcccccccccccEEeecCCcCcccc-hhhhCcCCCCE
Q 037941           62 KLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKKLVIFSFRNSHIEQLP-EEIGQLTRLKL  140 (308)
Q Consensus        62 ~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~~~~l~~l~~L~~L~l~~~~i~~l~-~~~~~l~~L~~  140 (308)
                      ++++++++.++ .+|..+   .++|++|++++|.++.+|..      +..+++|++|++++|.++.++ ..+..+++|+.
T Consensus        13 ~~l~~~~~~l~-~ip~~~---~~~l~~L~L~~n~i~~ip~~------~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~   82 (193)
T 2wfh_A           13 TVVRCSNKGLK-VLPKGI---PRDVTELYLDGNQFTLVPKE------LSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLT   82 (193)
T ss_dssp             TEEECTTSCCS-SCCSCC---CTTCCEEECCSSCCCSCCGG------GGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             CEEEcCCCCCC-cCCCCC---CCCCCEEECCCCcCchhHHH------hhcccCCCEEECCCCcCCEeCHhHccCCCCCCE
Confidence            45666666655 455433   24566667776666666654      666666777777666666554 34666666666


Q ss_pred             EecCCCCCCCccCcchhcCCCCCceEEccCCcccccccCCcccchhhhhcCCCCCEEEeeecc
Q 037941          141 LDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEVEGQNNASLAELNQLSRLTTLEMLILD  203 (308)
Q Consensus       141 L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  203 (308)
                      |++++|. ++.++...+..+++|+.|++++|.+...++       ..+..+++|+.|++++|.
T Consensus        83 L~Ls~N~-l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~-------~~~~~l~~L~~L~L~~N~  137 (193)
T 2wfh_A           83 LILSYNR-LRCIPPRTFDGLKSLRLLSLHGNDISVVPE-------GAFNDLSALSHLAIGANP  137 (193)
T ss_dssp             EECCSSC-CCBCCTTTTTTCTTCCEEECCSSCCCBCCT-------TTTTTCTTCCEEECCSSC
T ss_pred             EECCCCc-cCEeCHHHhCCCCCCCEEECCCCCCCeeCh-------hhhhcCccccEEEeCCCC
Confidence            6666666 555555446666666666666666662221       235556666666666654

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.48  E-value=6e-13  Score=104.93  Aligned_cols=131  Identities=22%  Similarity=0.278  Sum_probs=106.4

Q ss_pred             CccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCCCCCCcccccccccccEEeecCCcCcccchh-hhCcCCC
Q 037941           60 KLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKKLVIFSFRNSHIEQLPEE-IGQLTRL  138 (308)
Q Consensus        60 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~~~~l~~l~~L~~L~l~~~~i~~l~~~-~~~l~~L  138 (308)
                      ..+.++++++.++ .+|..+   .++|++|++++|.+..+|...     +..+++|++|++++|.++.+|.. +..+++|
T Consensus         8 ~~~~l~~~~~~l~-~~p~~~---~~~l~~L~l~~n~l~~~~~~~-----~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L   78 (177)
T 2o6r_A            8 SGTEIRCNSKGLT-SVPTGI---PSSATRLELESNKLQSLPHGV-----FDKLTQLTKLSLSQNQIQSLPDGVFDKLTKL   78 (177)
T ss_dssp             ETTEEECCSSCCS-SCCTTC---CTTCSEEECCSSCCCCCCTTT-----TTTCTTCSEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             CCCEEEecCCCCc-cCCCCC---CCCCcEEEeCCCcccEeCHHH-----hcCcccccEEECCCCcceEeChhHccCCCcc
Confidence            4578888888876 566533   478999999999999888764     78899999999999999987754 6889999


Q ss_pred             CEEecCCCCCCCccCcchhcCCCCCceEEccCCcccccccCCcccchhhhhcCCCCCEEEeeeccCccc
Q 037941          139 KLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEVEGQNNASLAELNQLSRLTTLEMLILDAQVM  207 (308)
Q Consensus       139 ~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~  207 (308)
                      +.|++++|. ++.++...+..+++|+.|++++|.+...++       ..+..+++|+.|++++|.+...
T Consensus        79 ~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~-------~~~~~l~~L~~L~l~~N~~~~~  139 (177)
T 2o6r_A           79 TILYLHENK-LQSLPNGVFDKLTQLKELALDTNQLKSVPD-------GIFDRLTSLQKIWLHTNPWDCS  139 (177)
T ss_dssp             CEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCT-------TTTTTCTTCCEEECCSSCBCCC
T ss_pred             CEEECCCCC-ccccCHHHhhCCcccCEEECcCCcceEeCH-------HHhcCCcccCEEEecCCCeecc
Confidence            999999998 777777667889999999999998883322       3457789999999999976543

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.46  E-value=9.1e-14  Score=132.95  Aligned_cols=116  Identities=19%  Similarity=0.210  Sum_probs=102.6

Q ss_pred             CCcC-CCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCCCCCCcccccccccccEEeecCCcCcccchh
Q 037941           53 PEKL-ECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKKLVIFSFRNSHIEQLPEE  131 (308)
Q Consensus        53 ~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~~~~l~~l~~L~~L~l~~~~i~~l~~~  131 (308)
                      +..+ .+++|+.|++++|.+. .++..++ .+++|++|+|++|.++.+|..      ++.+++|++|++++|.++.+|..
T Consensus       217 ~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~-~l~~L~~L~Ls~N~l~~lp~~------~~~l~~L~~L~Ls~N~l~~lp~~  288 (727)
T 4b8c_D          217 KDSKYDDQLWHALDLSNLQIF-NISANIF-KYDFLTRLYLNGNSLTELPAE------IKNLSNLRVLDLSHNRLTSLPAE  288 (727)
T ss_dssp             -----CCCCCCEEECTTSCCS-CCCGGGG-GCCSCSCCBCTTSCCSCCCGG------GGGGTTCCEEECTTSCCSSCCSS
T ss_pred             hhhhccCCCCcEEECCCCCCC-CCChhhc-CCCCCCEEEeeCCcCcccChh------hhCCCCCCEEeCcCCcCCccChh
Confidence            4444 8899999999999987 7787775 799999999999999999988      89999999999999999999999


Q ss_pred             hhCcCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCccccccc
Q 037941          132 IGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEVE  178 (308)
Q Consensus       132 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~  178 (308)
                      ++.+++|+.|++++|. ++.+|.. ++.+++|+.|++++|.+.+..+
T Consensus       289 ~~~l~~L~~L~L~~N~-l~~lp~~-~~~l~~L~~L~L~~N~l~~~~p  333 (727)
T 4b8c_D          289 LGSCFQLKYFYFFDNM-VTTLPWE-FGNLCNLQFLGVEGNPLEKQFL  333 (727)
T ss_dssp             GGGGTTCSEEECCSSC-CCCCCSS-TTSCTTCCCEECTTSCCCSHHH
T ss_pred             hcCCCCCCEEECCCCC-CCccChh-hhcCCCccEEeCCCCccCCCCh
Confidence            9999999999999998 7899988 8999999999999999985443

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.46  E-value=3.6e-13  Score=125.18  Aligned_cols=120  Identities=20%  Similarity=0.236  Sum_probs=94.0

Q ss_pred             CccEEEccCCCCCCCCCCCCCcccccccccccEEeecCCcCcccchhhhCcCCCCEEecCCCCCCCccCcchhcCCCCCc
Q 037941           85 SLQVLSLNGFHFPSLPSTLGDVATVGVLKKLVIFSFRNSHIEQLPEEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLE  164 (308)
Q Consensus        85 ~L~~L~l~~~~~~~lp~~~~~~~~l~~l~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~  164 (308)
                      .|++|++++|.++.+|.       ++.+++|++|++++|.++.+|..++.+++|+.|++++|. ++.+| . ++.+++|+
T Consensus       442 ~L~~L~Ls~n~l~~lp~-------~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp-~-l~~l~~L~  511 (567)
T 1dce_A          442 DVRVLHLAHKDLTVLCH-------LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNA-LENVD-G-VANLPRLQ  511 (567)
T ss_dssp             TCSEEECTTSCCSSCCC-------GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSC-CCCCG-G-GTTCSSCC
T ss_pred             CceEEEecCCCCCCCcC-------ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCC-CCCCc-c-cCCCCCCc
Confidence            58888888888888875       788888888888888888888888888888888888888 66677 3 78888888


Q ss_pred             eEEccCCcccccccCCcccchhhhhcCCCCCEEEeeeccCccccchhhc-----cCCceeE
Q 037941          165 ELYMGNSFTHWEVEGQNNASLAELNQLSRLTTLEMLILDAQVMPRELFS-----LGLERNK  220 (308)
Q Consensus       165 ~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~~~~-----~~L~~l~  220 (308)
                      .|++++|.+.+..      .+..+..+++|+.|++++|.++.+|.....     ++|+.|+
T Consensus       512 ~L~Ls~N~l~~~~------~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~  566 (567)
T 1dce_A          512 ELLLCNNRLQQSA------AIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL  566 (567)
T ss_dssp             EEECCSSCCCSSS------TTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred             EEECCCCCCCCCC------CcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence            8888888887332      046778888888888888888777664422     6666653

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.44  E-value=3.5e-13  Score=125.24  Aligned_cols=124  Identities=18%  Similarity=0.251  Sum_probs=99.7

Q ss_pred             CccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCCCCCCcccccccccccEEeecCCcCcccchhhhCcCCCC
Q 037941           60 KLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKKLVIFSFRNSHIEQLPEEIGQLTRLK  139 (308)
Q Consensus        60 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~~~~l~~l~~L~~L~l~~~~i~~l~~~~~~l~~L~  139 (308)
                      .|+.|++++|.+++ +|.  +..+++|++|++++|.+..+|..      ++.+++|++|++++|.++.+| .++.+++|+
T Consensus       442 ~L~~L~Ls~n~l~~-lp~--~~~l~~L~~L~Ls~N~l~~lp~~------~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~  511 (567)
T 1dce_A          442 DVRVLHLAHKDLTV-LCH--LEQLLLVTHLDLSHNRLRALPPA------LAALRCLEVLQASDNALENVD-GVANLPRLQ  511 (567)
T ss_dssp             TCSEEECTTSCCSS-CCC--GGGGTTCCEEECCSSCCCCCCGG------GGGCTTCCEEECCSSCCCCCG-GGTTCSSCC
T ss_pred             CceEEEecCCCCCC-CcC--ccccccCcEeecCcccccccchh------hhcCCCCCEEECCCCCCCCCc-ccCCCCCCc
Confidence            58888888888874 665  47889999999999999988887      888999999999999998888 688999999


Q ss_pred             EEecCCCCCCCcc--CcchhcCCCCCceEEccCCcccccccCCcccchhhhhcCCCCCEEEe
Q 037941          140 LLDLSTCSKLKSI--RPNVISNLPRLEELYMGNSFTHWEVEGQNNASLAELNQLSRLTTLEM  199 (308)
Q Consensus       140 ~L~l~~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l  199 (308)
                      .|++++|. ++.+  |.. ++.+++|+.|++++|.+.+.++    .....+..+++|+.|++
T Consensus       512 ~L~Ls~N~-l~~~~~p~~-l~~l~~L~~L~L~~N~l~~~~~----~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          512 ELLLCNNR-LQQSAAIQP-LVSCPRLVLLNLQGNSLCQEEG----IQERLAEMLPSVSSILT  567 (567)
T ss_dssp             EEECCSSC-CCSSSTTGG-GGGCTTCCEEECTTSGGGGSSS----CTTHHHHHCTTCSEEEC
T ss_pred             EEECCCCC-CCCCCCcHH-HhcCCCCCEEEecCCcCCCCcc----HHHHHHHHCcccCccCC
Confidence            99999988 6666  555 7889999999999998885433    22234456888888863

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.43  E-value=1.7e-15  Score=121.96  Aligned_cols=138  Identities=18%  Similarity=0.271  Sum_probs=95.7

Q ss_pred             CCCCCcC-CCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCCCCCCcccccccccccEEeecCCcCccc
Q 037941           50 QELPEKL-ECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKKLVIFSFRNSHIEQL  128 (308)
Q Consensus        50 ~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~~~~l~~l~~L~~L~l~~~~i~~l  128 (308)
                      ..+|..+ .+++|++|++++|.++. +| . +.++++|++|++++|.+..+|..      +..+++|++|++++|.++.+
T Consensus        38 ~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~-~~~l~~L~~L~l~~n~l~~l~~~------~~~~~~L~~L~L~~N~l~~l  108 (198)
T 1ds9_A           38 EKMDATLSTLKACKHLALSTNNIEK-IS-S-LSGMENLRILSLGRNLIKKIENL------DAVADTLEELWISYNQIASL  108 (198)
T ss_dssp             CCCHHHHHHTTTCSEEECSEEEESC-CC-C-HHHHTTCCEEEEEEEEECSCSSH------HHHHHHCSEEEEEEEECCCH
T ss_pred             hhhhHHHhcCCCCCEEECCCCCCcc-cc-c-cccCCCCCEEECCCCCcccccch------hhcCCcCCEEECcCCcCCcC
Confidence            3444455 78888888888887764 55 3 46788888888888888887775      66778888888888888877


Q ss_pred             chhhhCcCCCCEEecCCCCCCCccCc-chhcCCCCCceEEccCCcccccccCC---cccchhhhhcCCCCCEEE
Q 037941          129 PEEIGQLTRLKLLDLSTCSKLKSIRP-NVISNLPRLEELYMGNSFTHWEVEGQ---NNASLAELNQLSRLTTLE  198 (308)
Q Consensus       129 ~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~---~~~~~~~l~~l~~L~~L~  198 (308)
                      | .+..+++|+.|++++|. ++.++. ..+..+++|++|++++|.+.+..+..   .......+..+++|+.|+
T Consensus       109 ~-~~~~l~~L~~L~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld  180 (198)
T 1ds9_A          109 S-GIEKLVNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             H-HHHHHHHSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred             C-ccccCCCCCEEECCCCc-CCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence            6 47778888888888887 565553 33677888888888888776332210   001112366777888776

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.41  E-value=2.7e-15  Score=120.76  Aligned_cols=112  Identities=19%  Similarity=0.174  Sum_probs=97.2

Q ss_pred             hcCCCCccEEEccCCCCCCCCCCCCCcccccccccccEEeecCCcCcccchhhhCcCCCCEEecCCCCCCCccCcchhcC
Q 037941           80 FEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKKLVIFSFRNSHIEQLPEEIGQLTRLKLLDLSTCSKLKSIRPNVISN  159 (308)
Q Consensus        80 ~~~l~~L~~L~l~~~~~~~lp~~~~~~~~l~~l~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~  159 (308)
                      +..+++|++|++++|.+..+| .      +..+++|++|++++|.++.+|..+..+++|+.|++++|. ++.+|.  +..
T Consensus        44 ~~~l~~L~~L~ls~n~l~~l~-~------~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~-l~~l~~--~~~  113 (198)
T 1ds9_A           44 LSTLKACKHLALSTNNIEKIS-S------LSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQ-IASLSG--IEK  113 (198)
T ss_dssp             HHHTTTCSEEECSEEEESCCC-C------HHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEE-CCCHHH--HHH
T ss_pred             HhcCCCCCEEECCCCCCcccc-c------cccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCc-CCcCCc--ccc
Confidence            478999999999999999998 5      899999999999999999999888888999999999998 777773  788


Q ss_pred             CCCCceEEccCCcccccccCCcccchhhhhcCCCCCEEEeeeccCccc
Q 037941          160 LPRLEELYMGNSFTHWEVEGQNNASLAELNQLSRLTTLEMLILDAQVM  207 (308)
Q Consensus       160 l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~  207 (308)
                      +++|++|++++|.+....      .+..+..+++|+.|++++|.+...
T Consensus       114 l~~L~~L~l~~N~i~~~~------~~~~l~~l~~L~~L~l~~N~l~~~  155 (198)
T 1ds9_A          114 LVNLRVLYMSNNKITNWG------EIDKLAALDKLEDLLLAGNPLYND  155 (198)
T ss_dssp             HHHSSEEEESEEECCCHH------HHHHHTTTTTCSEEEECSCHHHHH
T ss_pred             CCCCCEEECCCCcCCchh------HHHHHhcCCCCCEEEecCCccccc
Confidence            999999999999988221      124688999999999999976544

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.39  E-value=3.6e-12  Score=100.25  Aligned_cols=103  Identities=26%  Similarity=0.324  Sum_probs=52.9

Q ss_pred             cEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCCCCCCcccccccccccEEeecCCcCcccchh-hhCcCCCCE
Q 037941           62 KLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKKLVIFSFRNSHIEQLPEE-IGQLTRLKL  140 (308)
Q Consensus        62 ~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~~~~l~~l~~L~~L~l~~~~i~~l~~~-~~~l~~L~~  140 (308)
                      +.++++++.++ .+|..+   .++|++|++++|.+..+++..     +..+++|++|++++|.++.+|.. +..+++|+.
T Consensus        15 ~~l~~~~n~l~-~iP~~~---~~~L~~L~Ls~N~l~~~~~~~-----~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~   85 (174)
T 2r9u_A           15 TLVNCQNIRLA-SVPAGI---PTDKQRLWLNNNQITKLEPGV-----FDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQ   85 (174)
T ss_dssp             SEEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTT-----TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             cEEEeCCCCCC-ccCCCc---CCCCcEEEeCCCCccccCHHH-----hcCCcCCCEEECCCCCCCccChhHhCCcchhhE
Confidence            34444444443 334322   145555555555555543322     55555555555555555555543 345555555


Q ss_pred             EecCCCCCCCccCcchhcCCCCCceEEccCCccc
Q 037941          141 LDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTH  174 (308)
Q Consensus       141 L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~  174 (308)
                      |++++|. ++.+|...+..+++|+.|++++|.+.
T Consensus        86 L~L~~N~-l~~l~~~~~~~l~~L~~L~L~~N~~~  118 (174)
T 2r9u_A           86 LDLNDNH-LKSIPRGAFDNLKSLTHIYLYNNPWD  118 (174)
T ss_dssp             EECCSSC-CCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred             EECCCCc-cceeCHHHhccccCCCEEEeCCCCcc
Confidence            5555555 44555444555556666666665555

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.37  E-value=4.8e-12  Score=99.12  Aligned_cols=103  Identities=24%  Similarity=0.302  Sum_probs=54.9

Q ss_pred             cEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCCCCCCcccccccccccEEeecCCcCcccchh-hhCcCCCCE
Q 037941           62 KLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKKLVIFSFRNSHIEQLPEE-IGQLTRLKL  140 (308)
Q Consensus        62 ~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~~~~l~~l~~L~~L~l~~~~i~~l~~~-~~~l~~L~~  140 (308)
                      +++++++|.++ .+|..+   .++|++|++++|.+..+++..     +..+++|++|++++|.++.+|.. +..+++|+.
T Consensus        12 ~~l~~s~n~l~-~ip~~~---~~~l~~L~L~~N~i~~~~~~~-----~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~   82 (170)
T 3g39_A           12 TTVDCSGKSLA-SVPTGI---PTTTQVLYLYDNQITKLEPGV-----FDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQ   82 (170)
T ss_dssp             TEEECTTSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTT-----TTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             CEEEeCCCCcC-ccCccC---CCCCcEEEcCCCcCCccChhh-----hcCcccCCEEECCCCCcCccChhhccCCCCCCE
Confidence            44555554444 334322   245555555555555553332     55555566666666655555433 355566666


Q ss_pred             EecCCCCCCCccCcchhcCCCCCceEEccCCccc
Q 037941          141 LDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTH  174 (308)
Q Consensus       141 L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~  174 (308)
                      |++++|. ++.++...+..+++|+.|++++|.+.
T Consensus        83 L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~~  115 (170)
T 3g39_A           83 LSLNDNQ-LKSIPRGAFDNLKSLTHIWLLNNPWD  115 (170)
T ss_dssp             EECCSSC-CCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             EECCCCc-cCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence            6666655 45555544555666666666666555

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.36  E-value=4.7e-12  Score=99.14  Aligned_cols=101  Identities=16%  Similarity=0.403  Sum_probs=64.1

Q ss_pred             eeEEeecCCCCCCCCcCCCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCCCCCCcccccccccccEEe
Q 037941           40 IAISHPCRDIQELPEKLECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKKLVIFS  119 (308)
Q Consensus        40 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~~~~l~~l~~L~~L~  119 (308)
                      ++++++++.+..+|... .+++++|++++|.+++..+.. |.++++|++|++++|.++.+|+..     +..+++|++|+
T Consensus        12 ~~l~~s~n~l~~ip~~~-~~~l~~L~L~~N~i~~~~~~~-~~~l~~L~~L~Ls~N~l~~l~~~~-----f~~l~~L~~L~   84 (170)
T 3g39_A           12 TTVDCSGKSLASVPTGI-PTTTQVLYLYDNQITKLEPGV-FDRLTQLTRLDLDNNQLTVLPAGV-----FDKLTQLTQLS   84 (170)
T ss_dssp             TEEECTTSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTT-TTTCTTCSEEECCSSCCCCCCTTT-----TTTCTTCCEEE
T ss_pred             CEEEeCCCCcCccCccC-CCCCcEEEcCCCcCCccChhh-hcCcccCCEEECCCCCcCccChhh-----ccCCCCCCEEE
Confidence            45666666666666544 366667777776666333333 356677777777777776666653     56666777777


Q ss_pred             ecCCcCcccch-hhhCcCCCCEEecCCCC
Q 037941          120 FRNSHIEQLPE-EIGQLTRLKLLDLSTCS  147 (308)
Q Consensus       120 l~~~~i~~l~~-~~~~l~~L~~L~l~~~~  147 (308)
                      +++|.++.+|. .+..+++|+.|++++|.
T Consensus        85 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~  113 (170)
T 3g39_A           85 LNDNQLKSIPRGAFDNLKSLTHIWLLNNP  113 (170)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCCCccCEeCHHHhcCCCCCCEEEeCCCC
Confidence            77777666654 36666677777777665

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.36  E-value=5.2e-12  Score=99.32  Aligned_cols=106  Identities=15%  Similarity=0.323  Sum_probs=69.9

Q ss_pred             eeEEeecCCCCCCCCcCCCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCCCCCCcccccccccccEEe
Q 037941           40 IAISHPCRDIQELPEKLECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKKLVIFS  119 (308)
Q Consensus        40 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~~~~l~~l~~L~~L~  119 (308)
                      +.++++++.+..+|.... ++|++|++++|.+++..+.. |.++++|++|++++|.+..+|...     +..+++|++|+
T Consensus        15 ~~l~~~~n~l~~iP~~~~-~~L~~L~Ls~N~l~~~~~~~-~~~l~~L~~L~Ls~N~l~~i~~~~-----~~~l~~L~~L~   87 (174)
T 2r9u_A           15 TLVNCQNIRLASVPAGIP-TDKQRLWLNNNQITKLEPGV-FDHLVNLQQLYFNSNKLTAIPTGV-----FDKLTQLTQLD   87 (174)
T ss_dssp             SEEECCSSCCSSCCSCCC-TTCSEEECCSSCCCCCCTTT-TTTCTTCCEEECCSSCCCCCCTTT-----TTTCTTCCEEE
T ss_pred             cEEEeCCCCCCccCCCcC-CCCcEEEeCCCCccccCHHH-hcCCcCCCEEECCCCCCCccChhH-----hCCcchhhEEE
Confidence            456777777766666543 67777777777766433333 356777777777777777776653     56677777777


Q ss_pred             ecCCcCcccchh-hhCcCCCCEEecCCCCCCCccC
Q 037941          120 FRNSHIEQLPEE-IGQLTRLKLLDLSTCSKLKSIR  153 (308)
Q Consensus       120 l~~~~i~~l~~~-~~~l~~L~~L~l~~~~~~~~~~  153 (308)
                      +++|.++.+|.. +..+++|+.|++++|. +...+
T Consensus        88 L~~N~l~~l~~~~~~~l~~L~~L~L~~N~-~~c~~  121 (174)
T 2r9u_A           88 LNDNHLKSIPRGAFDNLKSLTHIYLYNNP-WDCEC  121 (174)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCSEEECCSSC-BCTTB
T ss_pred             CCCCccceeCHHHhccccCCCEEEeCCCC-ccccc
Confidence            777777766654 6667777777777776 44443

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.31  E-value=7.4e-12  Score=108.65  Aligned_cols=78  Identities=15%  Similarity=0.192  Sum_probs=46.6

Q ss_pred             CCCCeeEEeecCCCC--------------------CCCCcC--C--------CCCccEEEecCCCCcCCCCchhhcCCCC
Q 037941           36 QKDPIAISHPCRDIQ--------------------ELPEKL--E--------CPKLKLFFLFSEKLSLVIPDLFFEGVPS   85 (308)
Q Consensus        36 ~~~l~~L~l~~~~~~--------------------~~~~~~--~--------~~~L~~L~l~~~~~~~~~~~~~~~~l~~   85 (308)
                      .+++++|++++|.+.                    .+|...  .        |++|+.+.+.. .++ .+++..|.++++
T Consensus        48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~-~I~~~aF~~~~~  125 (329)
T 3sb4_A           48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIK-NIEDAAFKGCDN  125 (329)
T ss_dssp             CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCC-EECTTTTTTCTT
T ss_pred             hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-ccc-chhHHHhhcCcc
Confidence            788999999999886                    223222  4        66666666665 444 445555566666


Q ss_pred             ccEEEccCCCCCCCCCCCCCcccccccccccEEee
Q 037941           86 LQVLSLNGFHFPSLPSTLGDVATVGVLKKLVIFSF  120 (308)
Q Consensus        86 L~~L~l~~~~~~~lp~~~~~~~~l~~l~~L~~L~l  120 (308)
                      |+.+++..+.+..+++..     |..+.++.++..
T Consensus       126 L~~l~l~~n~i~~i~~~a-----F~~~~~l~~l~~  155 (329)
T 3sb4_A          126 LKICQIRKKTAPNLLPEA-----LADSVTAIFIPL  155 (329)
T ss_dssp             CCEEEBCCSSCCEECTTS-----SCTTTCEEEECT
T ss_pred             cceEEcCCCCccccchhh-----hcCCCceEEecC
Confidence            666666666665555543     444444444443

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.12  E-value=1.8e-12  Score=114.28  Aligned_cols=168  Identities=12%  Similarity=0.002  Sum_probs=113.7

Q ss_pred             hcCCCCeeEEeecCCCCCC-----CCcC--CCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCCCCCCc
Q 037941           34 LMQKDPIAISHPCRDIQEL-----PEKL--ECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDV  106 (308)
Q Consensus        34 ~~~~~l~~L~l~~~~~~~~-----~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~~  106 (308)
                      ...+.++.|++++|.+...     ....  ..++|++|++++|.++......++..+.+|+.|++++|.++......  +
T Consensus        69 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~--L  146 (372)
T 3un9_A           69 EVLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKD--L  146 (372)
T ss_dssp             HHHTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHH--H
T ss_pred             HHHhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHH--H
Confidence            3467899999999988432     2221  34689999999998765434444455678999999999886322110  0


Q ss_pred             c-cc-cccccccEEeecCCcCc-----ccchhhhCcCCCCEEecCCCCCCCccC----cchhcCCCCCceEEccCCcccc
Q 037941          107 A-TV-GVLKKLVIFSFRNSHIE-----QLPEEIGQLTRLKLLDLSTCSKLKSIR----PNVISNLPRLEELYMGNSFTHW  175 (308)
Q Consensus       107 ~-~l-~~l~~L~~L~l~~~~i~-----~l~~~~~~l~~L~~L~l~~~~~~~~~~----~~~~~~l~~L~~L~l~~~~~~~  175 (308)
                      . .+ ...++|++|++++|.++     .++..+..+++|++|++++|. ++...    ...+...++|++|++++|.+.+
T Consensus       147 ~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~  225 (372)
T 3un9_A          147 RDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQELNVAYNGAGD  225 (372)
T ss_dssp             HHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSS-CHHHHHHHHHHHGGGCSCCCEEECCSSCCCH
T ss_pred             HHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCC-CCcHHHHHHHHHHhcCCCcCeEECCCCCCCH
Confidence            0 01 23578999999999886     355556788899999999988 54322    1125667789999999998873


Q ss_pred             cccCCcccchhhhhcCCCCCEEEeeeccCccc
Q 037941          176 EVEGQNNASLAELNQLSRLTTLEMLILDAQVM  207 (308)
Q Consensus       176 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~  207 (308)
                      ...   ......+...+.|++|++++|.++..
T Consensus       226 ~g~---~~l~~~L~~~~~L~~L~Ls~N~i~~~  254 (372)
T 3un9_A          226 TAA---LALARAAREHPSLELLHLYFNELSSE  254 (372)
T ss_dssp             HHH---HHHHHHHHHCSSCCEEECTTSSCCHH
T ss_pred             HHH---HHHHHHHHhCCCCCEEeccCCCCCHH
Confidence            211   12334566778899999999876543

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.10  E-value=5.1e-10  Score=97.01  Aligned_cols=56  Identities=9%  Similarity=0.125  Sum_probs=44.8

Q ss_pred             CCCCeeEEeecCCCCCCCCcC--CCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccC
Q 037941           36 QKDPIAISHPCRDIQELPEKL--ECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNG   93 (308)
Q Consensus        36 ~~~l~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~   93 (308)
                      .++++.+.+.. .+..++...  .|++|+.+.+..|.++ .+++..|.++.++..+....
T Consensus       100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~-~i~~~aF~~~~~l~~l~~~~  157 (329)
T 3sb4_A          100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAP-NLLPEALADSVTAIFIPLGS  157 (329)
T ss_dssp             CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCC-EECTTSSCTTTCEEEECTTC
T ss_pred             cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCcc-ccchhhhcCCCceEEecCcc
Confidence            68899999998 888887765  8999999999999877 56666677777777777655

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.06  E-value=5.3e-10  Score=97.54  Aligned_cols=100  Identities=15%  Similarity=0.128  Sum_probs=63.6

Q ss_pred             eEEeecC-CCCCCCCcC-CCCCccEEEecC-CCCcCCCCchhhcCCCCccEEEccCCCCCCCCCCCCCcccccccccccE
Q 037941           41 AISHPCR-DIQELPEKL-ECPKLKLFFLFS-EKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKKLVI  117 (308)
Q Consensus        41 ~L~l~~~-~~~~~~~~~-~~~~L~~L~l~~-~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~~~~l~~l~~L~~  117 (308)
                      .++.+++ .+..+|. + .+++|+.|++++ |.+. .++...|.++++|++|+|++|.++.+|+..     |..+++|++
T Consensus        12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~-----~~~l~~L~~   84 (347)
T 2ifg_A           12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQ-HLELRDLRGLGELRNLTIVKSGLRFVAPDA-----FHFTPRLSR   84 (347)
T ss_dssp             CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCC-EECGGGSCSCCCCSEEECCSSCCCEECTTG-----GGSCSCCCE
T ss_pred             EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCC-CcChhHhccccCCCEEECCCCccceeCHHH-----hcCCcCCCE
Confidence            3455555 5666666 5 666777777775 6665 344333466777777777777777665543     667777777


Q ss_pred             EeecCCcCcccchhhhCcCCCCEEecCCCC
Q 037941          118 FSFRNSHIEQLPEEIGQLTRLKLLDLSTCS  147 (308)
Q Consensus       118 L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~  147 (308)
                      |+|++|.++.+|..+.....|+.|++.+|.
T Consensus        85 L~l~~N~l~~~~~~~~~~~~L~~l~l~~N~  114 (347)
T 2ifg_A           85 LNLSFNALESLSWKTVQGLSLQELVLSGNP  114 (347)
T ss_dssp             EECCSSCCSCCCSTTTCSCCCCEEECCSSC
T ss_pred             EeCCCCccceeCHHHcccCCceEEEeeCCC
Confidence            777777777666544433347777777666

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.03  E-value=8.3e-09  Score=91.75  Aligned_cols=100  Identities=16%  Similarity=0.197  Sum_probs=52.1

Q ss_pred             CccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCCCCCCcccccccccccEEeecCCcCcccchhhhCcCCCC
Q 037941           60 KLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKKLVIFSFRNSHIEQLPEEIGQLTRLK  139 (308)
Q Consensus        60 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~~~~l~~l~~L~~L~l~~~~i~~l~~~~~~l~~L~  139 (308)
                      +|+.+.+..+ ++ .++...|.+ .+|+.+.+.. .+..++...     |..+.+|+.+++..|.++.++.......+|+
T Consensus       136 ~L~~i~l~~~-i~-~I~~~aF~~-~~L~~i~lp~-~l~~I~~~a-----F~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~  206 (401)
T 4fdw_A          136 QIAKVVLNEG-LK-SIGDMAFFN-STVQEIVFPS-TLEQLKEDI-----FYYCYNLKKADLSKTKITKLPASTFVYAGIE  206 (401)
T ss_dssp             CCSEEECCTT-CC-EECTTTTTT-CCCCEEECCT-TCCEECSST-----TTTCTTCCEEECTTSCCSEECTTTTTTCCCS
T ss_pred             CccEEEeCCC-cc-EECHHhcCC-CCceEEEeCC-CccEehHHH-----hhCcccCCeeecCCCcceEechhhEeecccC
Confidence            4566655543 22 334433433 2455555553 444444443     5556666666666665655554433345566


Q ss_pred             EEecCCCCCCCccCcchhcCCCCCceEEccC
Q 037941          140 LLDLSTCSKLKSIRPNVISNLPRLEELYMGN  170 (308)
Q Consensus       140 ~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~  170 (308)
                      .+.+..+  ++.++...|..+.+|+.+.+..
T Consensus       207 ~l~lp~~--l~~I~~~aF~~~~~L~~l~l~~  235 (401)
T 4fdw_A          207 EVLLPVT--LKEIGSQAFLKTSQLKTIEIPE  235 (401)
T ss_dssp             EEECCTT--CCEECTTTTTTCTTCCCEECCT
T ss_pred             EEEeCCc--hheehhhHhhCCCCCCEEecCC
Confidence            6665532  4555555555566666665554

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.02  E-value=8.6e-10  Score=96.21  Aligned_cols=105  Identities=20%  Similarity=0.226  Sum_probs=88.8

Q ss_pred             cEEEecCC-CCcCCCCchhhcCCCCccEEEccC-CCCCCCCCCCCCcccccccccccEEeecCCcCcccc-hhhhCcCCC
Q 037941           62 KLFFLFSE-KLSLVIPDLFFEGVPSLQVLSLNG-FHFPSLPSTLGDVATVGVLKKLVIFSFRNSHIEQLP-EEIGQLTRL  138 (308)
Q Consensus        62 ~~L~l~~~-~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~lp~~~~~~~~l~~l~~L~~L~l~~~~i~~l~-~~~~~l~~L  138 (308)
                      ..++.+++ .++ .+|.  +..+.+|++|+|++ |.+..+|+..     ++.+++|++|+|++|.++.++ ..+..+++|
T Consensus        11 ~~v~~~~~n~l~-~ip~--l~~~~~L~~L~l~~~n~l~~~~~~~-----~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L   82 (347)
T 2ifg_A           11 SGLRCTRDGALD-SLHH--LPGAENLTELYIENQQHLQHLELRD-----LRGLGELRNLTIVKSGLRFVAPDAFHFTPRL   82 (347)
T ss_dssp             SCEECCSSCCCT-TTTT--SCSCSCCSEEECCSCSSCCEECGGG-----SCSCCCCSEEECCSSCCCEECTTGGGSCSCC
T ss_pred             CEEEcCCCCCCC-ccCC--CCCCCCeeEEEccCCCCCCCcChhH-----hccccCCCEEECCCCccceeCHHHhcCCcCC
Confidence            45677777 666 6887  57899999999996 9999888654     899999999999999999665 568999999


Q ss_pred             CEEecCCCCCCCccCcchhcCCCCCceEEccCCccccc
Q 037941          139 KLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWE  176 (308)
Q Consensus       139 ~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~  176 (308)
                      +.|++++|. ++.+|...+..+. |+.|++.+|.+...
T Consensus        83 ~~L~l~~N~-l~~~~~~~~~~~~-L~~l~l~~N~~~c~  118 (347)
T 2ifg_A           83 SRLNLSFNA-LESLSWKTVQGLS-LQELVLSGNPLHCS  118 (347)
T ss_dssp             CEEECCSSC-CSCCCSTTTCSCC-CCEEECCSSCCCCC
T ss_pred             CEEeCCCCc-cceeCHHHcccCC-ceEEEeeCCCccCC
Confidence            999999998 7888887566555 99999999988743

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.96  E-value=7.9e-09  Score=91.89  Aligned_cols=232  Identities=9%  Similarity=0.091  Sum_probs=154.2

Q ss_pred             CCCeeEEeecCCCCCCCCcC-CCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCCCCCCcccccccccc
Q 037941           37 KDPIAISHPCRDIQELPEKL-ECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKKL  115 (308)
Q Consensus        37 ~~l~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~~~~l~~l~~L  115 (308)
                      .+++.+.+..+ +..++... .-.+|+.+.+.. .+. .++...|.++.+|+.+++..+.+..+|...     +. ..+|
T Consensus       135 ~~L~~i~l~~~-i~~I~~~aF~~~~L~~i~lp~-~l~-~I~~~aF~~c~~L~~l~l~~n~l~~I~~~a-----F~-~~~L  205 (401)
T 4fdw_A          135 SQIAKVVLNEG-LKSIGDMAFFNSTVQEIVFPS-TLE-QLKEDIFYYCYNLKKADLSKTKITKLPAST-----FV-YAGI  205 (401)
T ss_dssp             CCCSEEECCTT-CCEECTTTTTTCCCCEEECCT-TCC-EECSSTTTTCTTCCEEECTTSCCSEECTTT-----TT-TCCC
T ss_pred             CCccEEEeCCC-ccEECHHhcCCCCceEEEeCC-Ccc-EehHHHhhCcccCCeeecCCCcceEechhh-----Ee-eccc
Confidence            46788888655 66666554 224799999886 444 566666788999999999999999888874     55 5889


Q ss_pred             cEEeecCCcCcccc-hhhhCcCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCcccccccCCcccchhhhhcCCCC
Q 037941          116 VIFSFRNSHIEQLP-EEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEVEGQNNASLAELNQLSRL  194 (308)
Q Consensus       116 ~~L~l~~~~i~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L  194 (308)
                      +.+.+..+ ++.++ ..+..+++|+.+.+..+  ++.++...|.. .+|+.+.+..+ +...       ....|..+++|
T Consensus       206 ~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~--l~~I~~~aF~~-~~L~~i~lp~~-i~~I-------~~~aF~~c~~L  273 (401)
T 4fdw_A          206 EEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN--VSTIGQEAFRE-SGITTVKLPNG-VTNI-------ASRAFYYCPEL  273 (401)
T ss_dssp             SEEECCTT-CCEECTTTTTTCTTCCCEECCTT--CCEECTTTTTT-CCCSEEEEETT-CCEE-------CTTTTTTCTTC
T ss_pred             CEEEeCCc-hheehhhHhhCCCCCCEEecCCC--ccCcccccccc-CCccEEEeCCC-ccEE-------ChhHhhCCCCC
Confidence            99999744 77666 45778889999999874  67777776776 78998888543 3311       12577888999


Q ss_pred             CEEEeeeccCc-----cccchhhc--cCCceeEeecc--Cc-ccccCCCCcCceEEEeecCchhhhhhHHHHhcccceee
Q 037941          195 TTLEMLILDAQ-----VMPRELFS--LGLERNKIFLG--DV-WSWTGKYETSRTLKLKLDNRMYLEHGIKMLLRRTEDLH  264 (308)
Q Consensus       195 ~~L~l~~~~~~-----~~p~~~~~--~~L~~l~i~~~--~~-~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~  264 (308)
                      +.+.+.++...     .++...+.  .+|+.+.+..+  .+ ...+..+.+|+.+.|..+ ..........-+ +|+.+.
T Consensus       274 ~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~  351 (401)
T 4fdw_A          274 AEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVK  351 (401)
T ss_dssp             CEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEE
T ss_pred             CEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEE
Confidence            99998877654     56666655  67887776422  01 123566788888888554 222233333333 788888


Q ss_pred             cCCccchhhhhhccCCCCCC-cccEEeccc
Q 037941          265 LDKLNGLQNVLHELDGEGFP-RLKHLLVQN  293 (308)
Q Consensus       265 l~~~~~~~~~~~~~~~~~~~-~L~~L~l~~  293 (308)
                      +.+ +....+.... ..+++ .++.|.+-.
T Consensus       352 l~~-n~~~~l~~~~-F~~~~~~l~~l~vp~  379 (401)
T 4fdw_A          352 VEG-TTPPQVFEKV-WYGFPDDITVIRVPA  379 (401)
T ss_dssp             ECC-SSCCBCCCSS-CCCSCTTCCEEEECG
T ss_pred             EcC-CCCccccccc-ccCCCCCccEEEeCH
Confidence            887 3333322211 23443 566776644

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.86  E-value=3.7e-10  Score=99.48  Aligned_cols=161  Identities=14%  Similarity=0.098  Sum_probs=105.6

Q ss_pred             CCCCccEEEecCCCCcCCCCchhh----cCCCCccEEEccCCCCCC-CCCCCCCcccccccccccEEeecCCcCcccc--
Q 037941           57 ECPKLKLFFLFSEKLSLVIPDLFF----EGVPSLQVLSLNGFHFPS-LPSTLGDVATVGVLKKLVIFSFRNSHIEQLP--  129 (308)
Q Consensus        57 ~~~~L~~L~l~~~~~~~~~~~~~~----~~l~~L~~L~l~~~~~~~-lp~~~~~~~~l~~l~~L~~L~l~~~~i~~l~--  129 (308)
                      .++++++|++++|.++......+.    ....+|++|++++|.++. -...+     ...+.+|++|++++|.++...  
T Consensus        70 ~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l-----~~~L~~L~~L~Ls~n~l~~~~~~  144 (372)
T 3un9_A           70 VLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTL-----LPVFLRARKLGLQLNSLGPEACK  144 (372)
T ss_dssp             HHTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHT-----HHHHHTEEEEECCSSCCCHHHHH
T ss_pred             HHhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHH-----HHHHHhccHhhcCCCCCCHHHHH
Confidence            356899999999988643222221    133689999999998862 11121     345678999999999887322  


Q ss_pred             ---hhh-hCcCCCCEEecCCCCCCCccCcc----hhcCCCCCceEEccCCcccccccCCcccchhhhhcCCCCCEEEeee
Q 037941          130 ---EEI-GQLTRLKLLDLSTCSKLKSIRPN----VISNLPRLEELYMGNSFTHWEVEGQNNASLAELNQLSRLTTLEMLI  201 (308)
Q Consensus       130 ---~~~-~~l~~L~~L~l~~~~~~~~~~~~----~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~  201 (308)
                         ..+ ...++|+.|++++|. ++.....    .+...++|++|++++|.+.+...   ......+...+.|++|++++
T Consensus       145 ~L~~~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~---~~L~~~L~~~~~L~~L~Ls~  220 (372)
T 3un9_A          145 DLRDLLLHDQCQITTLRLSNNP-LTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGL---ELLAAQLDRNRQLQELNVAY  220 (372)
T ss_dssp             HHHHHHHSTTCCCCEEECCSSC-CHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHH---HHHHHHGGGCSCCCEEECCS
T ss_pred             HHHHHHHhcCCccceeeCCCCC-CChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHH---HHHHHHHhcCCCcCeEECCC
Confidence               222 346789999999998 5442211    14678899999999998873211   12235667788999999999


Q ss_pred             ccCccccc-----hhhc-cCCceeEeeccCc
Q 037941          202 LDAQVMPR-----ELFS-LGLERNKIFLGDV  226 (308)
Q Consensus       202 ~~~~~~p~-----~~~~-~~L~~l~i~~~~~  226 (308)
                      |.++....     .+.. ++|+.|++..+.+
T Consensus       221 N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i  251 (372)
T 3un9_A          221 NGAGDTAALALARAAREHPSLELLHLYFNEL  251 (372)
T ss_dssp             SCCCHHHHHHHHHHHHHCSSCCEEECTTSSC
T ss_pred             CCCCHHHHHHHHHHHHhCCCCCEEeccCCCC
Confidence            98764322     2211 5666666665554

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.47  E-value=3.5e-07  Score=79.99  Aligned_cols=204  Identities=15%  Similarity=0.135  Sum_probs=103.3

Q ss_pred             CCCCeeEEeecCCCC--C-------CCCcC-CCCCccEEEecCCCCc-----C---CCCchhhcCCCCccEEEccCCCCC
Q 037941           36 QKDPIAISHPCRDIQ--E-------LPEKL-ECPKLKLFFLFSEKLS-----L---VIPDLFFEGVPSLQVLSLNGFHFP   97 (308)
Q Consensus        36 ~~~l~~L~l~~~~~~--~-------~~~~~-~~~~L~~L~l~~~~~~-----~---~~~~~~~~~l~~L~~L~l~~~~~~   97 (308)
                      ...++.|.+....+.  .       +.... .+++|+.|.+......     +   .-...++..+++|+.|+++++.-.
T Consensus       106 ~~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l  185 (362)
T 2ra8_A          106 LPSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL  185 (362)
T ss_dssp             GGGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC
T ss_pred             chhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc
Confidence            345677777755432  1       11122 5678888887654221     0   012234467788888888776322


Q ss_pred             CCCCCCCCcccccccccccEEeecCCcCc-ccchhhh--CcCCCCEEecCCCCC-------CCccCcch-hcCCCCCceE
Q 037941           98 SLPSTLGDVATVGVLKKLVIFSFRNSHIE-QLPEEIG--QLTRLKLLDLSTCSK-------LKSIRPNV-ISNLPRLEEL  166 (308)
Q Consensus        98 ~lp~~~~~~~~l~~l~~L~~L~l~~~~i~-~l~~~~~--~l~~L~~L~l~~~~~-------~~~~~~~~-~~~l~~L~~L  166 (308)
                      .++.       +. +++|++|++..|.+. .....+.  .+++|+.|+++.+..       +..+...+ ...+++|++|
T Consensus       186 ~l~~-------~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L  257 (362)
T 2ra8_A          186 SIGK-------KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWL  257 (362)
T ss_dssp             BCCS-------CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEE
T ss_pred             eecc-------cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEE
Confidence            3433       22 677888888777765 2223333  677888887753110       11111110 1246677777


Q ss_pred             EccCCcccccccCCcccchhhhhcCCCCCEEEeeeccCccccchhhccCCceeEeeccCcccccCCCCcCceEEEeecCc
Q 037941          167 YMGNSFTHWEVEGQNNASLAELNQLSRLTTLEMLILDAQVMPRELFSLGLERNKIFLGDVWSWTGKYETSRTLKLKLDNR  246 (308)
Q Consensus       167 ~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~~~~~~L~~l~i~~~~~~~~~~~~~~L~~L~L~~~~~  246 (308)
                      ++.+|.+.+...    ....+...+++|++|+++.|.++..-...              +......+++|+.|+|+.|..
T Consensus       258 ~L~~~~i~~~~~----~~la~a~~~~~L~~LdLs~n~L~d~G~~~--------------L~~~L~~l~~L~~L~L~~n~i  319 (362)
T 2ra8_A          258 GIVDAEEQNVVV----EMFLESDILPQLETMDISAGVLTDEGARL--------------LLDHVDKIKHLKFINMKYNYL  319 (362)
T ss_dssp             EEESCTTHHHHH----HHHHHCSSGGGCSEEECCSSCCBHHHHHH--------------HHTTHHHHTTCSEEECCSBBC
T ss_pred             eCCCCCCchHHH----HHHHhCccCCCCCEEECCCCCCChHHHHH--------------HHhhcccCCcceEEECCCCcC
Confidence            777776652111    11111124667777777666443210000              001123456788888877643


Q ss_pred             hhhhhhHHHHhccc-ceeecCC
Q 037941          247 MYLEHGIKMLLRRT-EDLHLDK  267 (308)
Q Consensus       247 ~~~~~~~~~~~~~L-~~L~l~~  267 (308)
                      .  +.++..+-..+ .+++++.
T Consensus       320 ~--d~~~~~l~~alg~~~~~~~  339 (362)
T 2ra8_A          320 S--DEMKKELQKSLPMKIDVSD  339 (362)
T ss_dssp             C--HHHHHHHHHHCCSEEECCS
T ss_pred             C--HHHHHHHHHHcCCEEEecC
Confidence            2  34444432223 5566665

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.39  E-value=1.1e-07  Score=75.06  Aligned_cols=91  Identities=15%  Similarity=0.105  Sum_probs=47.2

Q ss_pred             ccccccccEEeecCCcCc-----ccchhhhCcCCCCEEecCCCCCCCc-----cCcchhcCCCCCceEEc--cCCccccc
Q 037941          109 VGVLKKLVIFSFRNSHIE-----QLPEEIGQLTRLKLLDLSTCSKLKS-----IRPNVISNLPRLEELYM--GNSFTHWE  176 (308)
Q Consensus       109 l~~l~~L~~L~l~~~~i~-----~l~~~~~~l~~L~~L~l~~~~~~~~-----~~~~~~~~l~~L~~L~l--~~~~~~~~  176 (308)
                      +...++|++|++++|.+.     .+...+...++|+.|++++|. ++.     +... +...++|++|++  ++|.+.+.
T Consensus        61 L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~-i~~~g~~~l~~~-L~~n~~L~~L~L~~~~N~i~~~  138 (185)
T 1io0_A           61 LKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNF-ISGSGILALVEA-LQSNTSLIELRIDNQSQPLGNN  138 (185)
T ss_dssp             HTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSC-CCHHHHHHHHHG-GGGCSSCCEEECCCCSSCCCHH
T ss_pred             HHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCc-CCHHHHHHHHHH-HHhCCCceEEEecCCCCCCCHH
Confidence            334455666666666554     233344445566666666665 332     1222 444556666666  55665521


Q ss_pred             ccCCcccchhhhhcCCCCCEEEeeeccC
Q 037941          177 VEGQNNASLAELNQLSRLTTLEMLILDA  204 (308)
Q Consensus       177 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~  204 (308)
                      ..   ......+...+.|++|++++|.+
T Consensus       139 g~---~~l~~~L~~n~~L~~L~L~~n~i  163 (185)
T 1io0_A          139 VE---MEIANMLEKNTTLLKFGYHFTQQ  163 (185)
T ss_dssp             HH---HHHHHHHHHCSSCCEEECCCSSH
T ss_pred             HH---HHHHHHHHhCCCcCEEeccCCCC
Confidence            11   11223445556677777766654

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.37  E-value=4.8e-07  Score=79.12  Aligned_cols=159  Identities=14%  Similarity=0.119  Sum_probs=102.0

Q ss_pred             cCCCCeeEEeecCCCC----------CCCCcC-CCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCC-CCCC
Q 037941           35 MQKDPIAISHPCRDIQ----------ELPEKL-ECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPS-LPST  102 (308)
Q Consensus        35 ~~~~l~~L~l~~~~~~----------~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-lp~~  102 (308)
                      .+++|+.|.+......          .+.... .+|+|+.|.++++.-. .++. +  .+++|+.|++..+.+.. ....
T Consensus       137 ~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~--~~~~L~~L~L~~~~l~~~~l~~  212 (362)
T 2ra8_A          137 KFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-K--PRPNLKSLEIISGGLPDSVVED  212 (362)
T ss_dssp             HHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-C--BCTTCSEEEEECSBCCHHHHHH
T ss_pred             hcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-c--cCCCCcEEEEecCCCChHHHHH
Confidence            4679999998754331          233333 7899999999887422 2333 2  37899999998887652 1111


Q ss_pred             CCCccccc--ccccccEEeecCC--c------Ccccchhh--hCcCCCCEEecCCCCCCCccCcchh--cCCCCCceEEc
Q 037941          103 LGDVATVG--VLKKLVIFSFRNS--H------IEQLPEEI--GQLTRLKLLDLSTCSKLKSIRPNVI--SNLPRLEELYM  168 (308)
Q Consensus       103 ~~~~~~l~--~l~~L~~L~l~~~--~------i~~l~~~~--~~l~~L~~L~l~~~~~~~~~~~~~~--~~l~~L~~L~l  168 (308)
                            +.  .+++|++|+++.+  .      +..+...+  ..+++|++|++.+|......+..+.  ..+++|++|++
T Consensus       213 ------l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdL  286 (362)
T 2ra8_A          213 ------ILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDI  286 (362)
T ss_dssp             ------HHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEEC
T ss_pred             ------HHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEEC
Confidence                  32  6899999998532  1      22233323  3578999999999873322222211  25789999999


Q ss_pred             cCCcccccccCCcccchhhhhcCCCCCEEEeeeccCcc
Q 037941          169 GNSFTHWEVEGQNNASLAELNQLSRLTTLEMLILDAQV  206 (308)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  206 (308)
                      +.|.+.+...   ......+..+++|+.|+++.|.++.
T Consensus       287 s~n~L~d~G~---~~L~~~L~~l~~L~~L~L~~n~i~d  321 (362)
T 2ra8_A          287 SAGVLTDEGA---RLLLDHVDKIKHLKFINMKYNYLSD  321 (362)
T ss_dssp             CSSCCBHHHH---HHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred             CCCCCChHHH---HHHHhhcccCCcceEEECCCCcCCH
Confidence            9998773211   1222344678999999999987543

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.25  E-value=1.3e-06  Score=67.73  Aligned_cols=82  Identities=16%  Similarity=0.190  Sum_probs=38.4

Q ss_pred             cccEEeecCCcCccc-chhhhCcCCCCEEecCCCCCCCccCcchhcCC----CCCceEEccCCc-ccccccCCcccchhh
Q 037941          114 KLVIFSFRNSHIEQL-PEEIGQLTRLKLLDLSTCSKLKSIRPNVISNL----PRLEELYMGNSF-THWEVEGQNNASLAE  187 (308)
Q Consensus       114 ~L~~L~l~~~~i~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l----~~L~~L~l~~~~-~~~~~~~~~~~~~~~  187 (308)
                      +|++||+++|.++.. -..+..+++|+.|++++|..++.-.-..++.+    ++|++|++++|. ++       +..+..
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~IT-------D~Gl~~  134 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVT-------DKGIIA  134 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCC-------HHHHHH
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCC-------HHHHHH
Confidence            355555555554411 12244555555555555543433222223332    245555555553 33       223344


Q ss_pred             hhcCCCCCEEEeeec
Q 037941          188 LNQLSRLTTLEMLIL  202 (308)
Q Consensus       188 l~~l~~L~~L~l~~~  202 (308)
                      ++.+++|++|+++++
T Consensus       135 L~~~~~L~~L~L~~c  149 (176)
T 3e4g_A          135 LHHFRNLKYLFLSDL  149 (176)
T ss_dssp             GGGCTTCCEEEEESC
T ss_pred             HhcCCCCCEEECCCC
Confidence            555566666666655

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.20  E-value=5.7e-07  Score=70.98  Aligned_cols=111  Identities=15%  Similarity=0.098  Sum_probs=74.2

Q ss_pred             CCCCccEEEecCC-CCcCCCC---chhhcCCCCccEEEccCCCCCC-----CCCCCCCcccccccccccEEeecCCcCc-
Q 037941           57 ECPKLKLFFLFSE-KLSLVIP---DLFFEGVPSLQVLSLNGFHFPS-----LPSTLGDVATVGVLKKLVIFSFRNSHIE-  126 (308)
Q Consensus        57 ~~~~L~~L~l~~~-~~~~~~~---~~~~~~l~~L~~L~l~~~~~~~-----lp~~~~~~~~l~~l~~L~~L~l~~~~i~-  126 (308)
                      ..++|++|++++| .+...-.   ...+...+.|++|++++|.+..     +...      +...++|++|++++|.+. 
T Consensus        34 ~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~------L~~n~~L~~L~L~~N~i~~  107 (185)
T 1io0_A           34 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEM------LKVNNTLKSLNVESNFISG  107 (185)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHH------HHHCSSCCEEECCSSCCCH
T ss_pred             cCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHH------HHhCCCcCEEECcCCcCCH
Confidence            5677777888777 6543211   1122456788888888888762     2222      455578889999988887 


Q ss_pred             ----ccchhhhCcCCCCEEec--CCCCCCCccCc----chhcCCCCCceEEccCCccc
Q 037941          127 ----QLPEEIGQLTRLKLLDL--STCSKLKSIRP----NVISNLPRLEELYMGNSFTH  174 (308)
Q Consensus       127 ----~l~~~~~~l~~L~~L~l--~~~~~~~~~~~----~~~~~l~~L~~L~l~~~~~~  174 (308)
                          .+...+...++|+.|++  ++|. ++.-..    ..+...++|++|++++|.+.
T Consensus       108 ~g~~~l~~~L~~n~~L~~L~L~~~~N~-i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          108 SGILALVEALQSNTSLIELRIDNQSQP-LGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHHHHHHGGGGCSSCCEEECCCCSSC-CCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHHHHHHHHhCCCceEEEecCCCCC-CCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence                25566777788999999  7776 543221    12455688999999988776

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.16  E-value=3.6e-06  Score=65.27  Aligned_cols=68  Identities=9%  Similarity=0.048  Sum_probs=54.0

Q ss_pred             cCCCCcCceEEEeecCchhhhhhHHHHh------cccceeecCCccchhhhhhccCCCCCCcccEEeccccccccc
Q 037941          230 TGKYETSRTLKLKLDNRMYLEHGIKMLL------RRTEDLHLDKLNGLQNVLHELDGEGFPRLKHLLVQNASEILY  299 (308)
Q Consensus       230 ~~~~~~L~~L~L~~~~~~~~~~~~~~~~------~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~  299 (308)
                      ...+++|+.|+|+.|..++ +.++..+.      ++|++|++++|..+++.+.... ..+++|++|++++|+++..
T Consensus        81 L~~~~~L~~L~L~~C~~It-D~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L-~~~~~L~~L~L~~c~~Itd  154 (176)
T 3e4g_A           81 MEGLQYVEKIRLCKCHYIE-DGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIAL-HHFRNLKYLFLSDLPGVKE  154 (176)
T ss_dssp             GTTCSCCCEEEEESCTTCC-HHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHG-GGCTTCCEEEEESCTTCCC
T ss_pred             hcCCCCCCEEEeCCCCccC-HHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHH-hcCCCCCEEECCCCCCCCc
Confidence            4578899999999997765 55555442      4799999999999888766543 4689999999999998864

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.16  E-value=3e-05  Score=68.57  Aligned_cols=58  Identities=24%  Similarity=0.252  Sum_probs=29.8

Q ss_pred             ccccccccEEeecCCcCcccc-hhhhCcCCCCEEecCCCCCCCccCcchhcCCCCCceEEcc
Q 037941          109 VGVLKKLVIFSFRNSHIEQLP-EEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMG  169 (308)
Q Consensus       109 l~~l~~L~~L~l~~~~i~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~  169 (308)
                      +..+.+|+.+.+..+ +..++ ..+..+.+|+.+.+..+  ++.++...+.++..|+.+.+.
T Consensus       158 F~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~--~~~I~~~~F~~~~~L~~i~~~  216 (394)
T 4fs7_A          158 FATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN--LKIIRDYCFAECILLENMEFP  216 (394)
T ss_dssp             TTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT--CCEECTTTTTTCTTCCBCCCC
T ss_pred             hcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC--ceEeCchhhccccccceeecC
Confidence            445566666666543 23333 33555566666666543  344444445555555555443

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.05  E-value=5.5e-06  Score=68.97  Aligned_cols=81  Identities=23%  Similarity=0.310  Sum_probs=62.6

Q ss_pred             cCCCCccEEEccCCCCCCCC---CCCCCcccccccccccEEeecCCcCcccchhhhCcC--CCCEEecCCCCCCCccCc-
Q 037941           81 EGVPSLQVLSLNGFHFPSLP---STLGDVATVGVLKKLVIFSFRNSHIEQLPEEIGQLT--RLKLLDLSTCSKLKSIRP-  154 (308)
Q Consensus        81 ~~l~~L~~L~l~~~~~~~lp---~~~~~~~~l~~l~~L~~L~l~~~~i~~l~~~~~~l~--~L~~L~l~~~~~~~~~~~-  154 (308)
                      ..+++|+.|+|++|.+..++   ..      +..+++|++|++++|.++.+.. +..+.  +|+.|++++|.....+|. 
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~------~~~l~~L~~L~Ls~N~i~~~~~-l~~l~~l~L~~L~L~~Npl~~~~~~~  239 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSI------VQKAPNLKILNLSGNELKSERE-LDKIKGLKLEELWLDGNSLCDTFRDQ  239 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTH------HHHSTTCCEEECTTSCCCSGGG-GGGGTTSCCSEEECTTSTTGGGCSSH
T ss_pred             hhCCCCCEEECCCCCCCCCccchhH------HhhCCCCCEEECCCCccCCchh-hhhcccCCcceEEccCCcCccccCcc
Confidence            46889999999999998654   33      6689999999999999987633 55555  899999999985544542 


Q ss_pred             -----chhcCCCCCceEEc
Q 037941          155 -----NVISNLPRLEELYM  168 (308)
Q Consensus       155 -----~~~~~l~~L~~L~l  168 (308)
                           .++..+++|+.||-
T Consensus       240 ~~y~~~il~~~P~L~~LDg  258 (267)
T 3rw6_A          240 STYISAIRERFPKLLRLDG  258 (267)
T ss_dssp             HHHHHHHHHHCTTCCEESS
T ss_pred             hhHHHHHHHHCcccCeECC
Confidence                 24677899998874

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.02  E-value=4.8e-06  Score=69.32  Aligned_cols=65  Identities=20%  Similarity=0.222  Sum_probs=33.7

Q ss_pred             hCcCCCCEEecCCCCCCCccCc--chhcCCCCCceEEccCCcccccccCCcccchhhhhcCCCCCEEEeeeccCc
Q 037941          133 GQLTRLKLLDLSTCSKLKSIRP--NVISNLPRLEELYMGNSFTHWEVEGQNNASLAELNQLSRLTTLEMLILDAQ  205 (308)
Q Consensus       133 ~~l~~L~~L~l~~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  205 (308)
                      .++++|+.|++++|. +..++.  ..+..+++|+.|++++|.+.+.      ..+..+..+ +|++|++++|.+.
T Consensus       167 ~~l~~L~~L~Ls~N~-l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~------~~l~~l~~l-~L~~L~L~~Npl~  233 (267)
T 3rw6_A          167 ENIPELLSLNLSNNR-LYRLDDMSSIVQKAPNLKILNLSGNELKSE------RELDKIKGL-KLEELWLDGNSLC  233 (267)
T ss_dssp             HHCTTCCEEECTTSC-CCCCGGGTTHHHHSTTCCEEECTTSCCCSG------GGGGGGTTS-CCSEEECTTSTTG
T ss_pred             hhCCCCCEEECCCCC-CCCCccchhHHhhCCCCCEEECCCCccCCc------hhhhhcccC-CcceEEccCCcCc
Confidence            345666666666665 433321  1244566666666666666521      112233333 6666666666643

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=97.93  E-value=8.5e-05  Score=65.61  Aligned_cols=62  Identities=18%  Similarity=0.179  Sum_probs=32.0

Q ss_pred             CchhhcCCCCccEEEccCCCCCCCCCCCCCcccccccccccEEeecCCcCcccc-hhhhCcCCCCEEecC
Q 037941           76 PDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKKLVIFSFRNSHIEQLP-EEIGQLTRLKLLDLS  144 (308)
Q Consensus        76 ~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~~~~l~~l~~L~~L~l~~~~i~~l~-~~~~~l~~L~~L~l~  144 (308)
                      ....|.++.+|+.+.+..+ +..++...     +..+.+|+.+.+..+ ++.++ ..+..+..|+.+.+.
T Consensus       154 ~~~aF~~c~~L~~i~l~~~-~~~I~~~~-----F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~  216 (394)
T 4fs7_A          154 GDEAFATCESLEYVSLPDS-METLHNGL-----FSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFP  216 (394)
T ss_dssp             CTTTTTTCTTCCEEECCTT-CCEECTTT-----TTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCC
T ss_pred             chhhhcccCCCcEEecCCc-cceecccc-----ccCCCCceEEEcCCC-ceEeCchhhccccccceeecC
Confidence            3344566777777777543 23444443     556666666666544 33332 234444455544443

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=97.75  E-value=0.00084  Score=59.16  Aligned_cols=60  Identities=3%  Similarity=-0.012  Sum_probs=29.2

Q ss_pred             cCCCCcCceEEEeecCchhhhhhHHHHhcccceeecCCccchhhhhhccCCCCCCcccEEeccc
Q 037941          230 TGKYETSRTLKLKLDNRMYLEHGIKMLLRRTEDLHLDKLNGLQNVLHELDGEGFPRLKHLLVQN  293 (308)
Q Consensus       230 ~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~  293 (308)
                      +..+.+|+.++|..+ ..........-+.+|+.+.+-.  .++.+... ...++++|+.+.+.+
T Consensus       307 F~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~--sv~~I~~~-aF~~C~~L~~i~~~~  366 (394)
T 4gt6_A          307 FAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPS--SVTKIPES-AFSNCTALNNIEYSG  366 (394)
T ss_dssp             TTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECT--TCCBCCGG-GGTTCTTCCEEEESS
T ss_pred             ecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECc--ccCEEhHh-HhhCCCCCCEEEECC
Confidence            445566776666432 1111122222236677777642  24443321 125667777777654

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=97.55  E-value=0.0004  Score=61.29  Aligned_cols=109  Identities=17%  Similarity=0.169  Sum_probs=61.2

Q ss_pred             chhhcCCCCccEEEccCCCCCCCCCCCCCcccccccccccEEeecCCcCcccc-hhhhCcCCCCEEecCCCCCCCccCcc
Q 037941           77 DLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKKLVIFSFRNSHIEQLP-EEIGQLTRLKLLDLSTCSKLKSIRPN  155 (308)
Q Consensus        77 ~~~~~~l~~L~~L~l~~~~~~~lp~~~~~~~~l~~l~~L~~L~l~~~~i~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~  155 (308)
                      ...|.++..|+.+.+.... ..+....     +..+.+|+.+.+. +.++.++ ..+..+.+|+.+.+..+  ++.+...
T Consensus       258 ~~aF~~c~~L~~i~lp~~~-~~I~~~a-----F~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~~  328 (394)
T 4gt6_A          258 THAFDSCAYLASVKMPDSV-VSIGTGA-----FMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG--ITQILDD  328 (394)
T ss_dssp             TTTTTTCSSCCEEECCTTC-CEECTTT-----TTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT--CCEECTT
T ss_pred             cceeeecccccEEeccccc-ceecCcc-----cccccccccccCC-CcccccCceeecCCCCcCEEEeCCc--ccEehHh
Confidence            3344566666666664332 2333332     5566666666664 3355554 34556667777776543  5556655


Q ss_pred             hhcCCCCCceEEccCCcccccccCCcccchhhhhcCCCCCEEEeeec
Q 037941          156 VISNLPRLEELYMGNSFTHWEVEGQNNASLAELNQLSRLTTLEMLIL  202 (308)
Q Consensus       156 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~  202 (308)
                      .|..|.+|+.+.+..+ +...       ....|.++.+|+.+.+.++
T Consensus       329 aF~~C~~L~~i~ip~s-v~~I-------~~~aF~~C~~L~~i~~~~~  367 (394)
T 4gt6_A          329 AFAGCEQLERIAIPSS-VTKI-------PESAFSNCTALNNIEYSGS  367 (394)
T ss_dssp             TTTTCTTCCEEEECTT-CCBC-------CGGGGTTCTTCCEEEESSC
T ss_pred             HhhCCCCCCEEEECcc-cCEE-------hHhHhhCCCCCCEEEECCc
Confidence            5666777777766543 2211       1245666777777776654

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=97.17  E-value=0.0022  Score=56.10  Aligned_cols=137  Identities=15%  Similarity=0.195  Sum_probs=89.3

Q ss_pred             CCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCCCCCCcccccccccccEEeecCCcCcccc-hhhhCc
Q 037941           57 ECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKKLVIFSFRNSHIEQLP-EEIGQL  135 (308)
Q Consensus        57 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~~~~l~~l~~L~~L~l~~~~i~~l~-~~~~~l  135 (308)
                      .+.+++.+.+..+- . .+....|.++..|+.+.+..+ +..+....     +..+.+|+.+.+..+ ++.++ ..+..+
T Consensus       215 ~~~~l~~i~~~~~~-~-~i~~~~f~~~~~L~~i~lp~~-v~~I~~~a-----F~~~~~l~~i~l~~~-i~~i~~~aF~~c  285 (379)
T 4h09_A          215 YGKNLKKITITSGV-T-TLGDGAFYGMKALDEIAIPKN-VTSIGSFL-----LQNCTALKTLNFYAK-VKTVPYLLCSGC  285 (379)
T ss_dssp             TCSSCSEEECCTTC-C-EECTTTTTTCSSCCEEEECTT-CCEECTTT-----TTTCTTCCEEEECCC-CSEECTTTTTTC
T ss_pred             cccccceeeeccce-e-EEccccccCCccceEEEcCCC-ccEeCccc-----cceeehhcccccccc-ceeccccccccc
Confidence            67778888776542 2 344444567788888887654 55555543     677778888887543 55555 446778


Q ss_pred             CCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCcccccccCCcccchhhhhcCCCCCEEEeeeccCccccchhh
Q 037941          136 TRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEVEGQNNASLAELNQLSRLTTLEMLILDAQVMPRELF  212 (308)
Q Consensus       136 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~~~  212 (308)
                      ++|+.+.+.++. ++.++...|.++.+|+.+.+..+ +...       ....|.++.+|+.+.+..+ ++.+....+
T Consensus       286 ~~L~~i~l~~~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I-------~~~aF~~C~~L~~i~ip~~-v~~I~~~aF  352 (379)
T 4h09_A          286 SNLTKVVMDNSA-IETLEPRVFMDCVKLSSVTLPTA-LKTI-------QVYAFKNCKALSTISYPKS-ITLIESGAF  352 (379)
T ss_dssp             TTCCEEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEE-------CTTTTTTCTTCCCCCCCTT-CCEECTTTT
T ss_pred             cccccccccccc-cceehhhhhcCCCCCCEEEcCcc-ccEE-------HHHHhhCCCCCCEEEECCc-cCEEchhHh
Confidence            888888887766 67777777888888888888644 2211       1246777888888777543 444444433

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=97.12  E-value=0.0045  Score=54.01  Aligned_cols=146  Identities=14%  Similarity=0.071  Sum_probs=98.1

Q ss_pred             CCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCCCCCCcccccccccccEEeecCCcCcccc-hhhhCc
Q 037941           57 ECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKKLVIFSFRNSHIEQLP-EEIGQL  135 (308)
Q Consensus        57 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~~~~l~~l~~L~~L~l~~~~i~~l~-~~~~~l  135 (308)
                      .+..+..+.+.....  .+....+.....|+.+.+..+ +..++...     +..+.+|+.+.+..+ ++.+. ..+..+
T Consensus       192 ~~~~~~~~~~~~~~~--~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~-----f~~~~~L~~i~lp~~-v~~I~~~aF~~~  262 (379)
T 4h09_A          192 AAKTGTEFTIPSTVK--TVTAYGFSYGKNLKKITITSG-VTTLGDGA-----FYGMKALDEIAIPKN-VTSIGSFLLQNC  262 (379)
T ss_dssp             TTCCCSEEECCTTCC--EECTTTTTTCSSCSEEECCTT-CCEECTTT-----TTTCSSCCEEEECTT-CCEECTTTTTTC
T ss_pred             cccccccccccccee--EEeecccccccccceeeeccc-eeEEcccc-----ccCCccceEEEcCCC-ccEeCcccccee
Confidence            455556665544332  223333456778888887543 44444443     677888999888765 66565 446778


Q ss_pred             CCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCcccccccCCcccchhhhhcCCCCCEEEeeeccCccccchhhc--
Q 037941          136 TRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEVEGQNNASLAELNQLSRLTTLEMLILDAQVMPRELFS--  213 (308)
Q Consensus       136 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~~~~--  213 (308)
                      .+|+.+.+..+  +..++...+..+.+|+.+.+.++.+....       ...|.++.+|+.+.+..+ ++.+....+.  
T Consensus       263 ~~l~~i~l~~~--i~~i~~~aF~~c~~L~~i~l~~~~i~~I~-------~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C  332 (379)
T 4h09_A          263 TALKTLNFYAK--VKTVPYLLCSGCSNLTKVVMDNSAIETLE-------PRVFMDCVKLSSVTLPTA-LKTIQVYAFKNC  332 (379)
T ss_dssp             TTCCEEEECCC--CSEECTTTTTTCTTCCEEEECCTTCCEEC-------TTTTTTCTTCCEEECCTT-CCEECTTTTTTC
T ss_pred             ehhcccccccc--ceeccccccccccccccccccccccceeh-------hhhhcCCCCCCEEEcCcc-ccEEHHHHhhCC
Confidence            88999988654  66777777888999999998877655222       257888899999998643 6667666655  


Q ss_pred             cCCceeEe
Q 037941          214 LGLERNKI  221 (308)
Q Consensus       214 ~~L~~l~i  221 (308)
                      .+|+.+.+
T Consensus       333 ~~L~~i~i  340 (379)
T 4h09_A          333 KALSTISY  340 (379)
T ss_dssp             TTCCCCCC
T ss_pred             CCCCEEEE
Confidence            67777655

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.50  E-value=0.0058  Score=44.73  Aligned_cols=34  Identities=24%  Similarity=0.310  Sum_probs=15.3

Q ss_pred             ccEEEccCCCCCCCCCCCCCcccccccccccEEeecCCc
Q 037941           86 LQVLSLNGFHFPSLPSTLGDVATVGVLKKLVIFSFRNSH  124 (308)
Q Consensus        86 L~~L~l~~~~~~~lp~~~~~~~~l~~l~~L~~L~l~~~~  124 (308)
                      |++|+|++|.++.+|.+.     +..+++|++|+|.+|.
T Consensus        33 l~~L~Ls~N~l~~l~~~~-----f~~l~~L~~L~L~~NP   66 (130)
T 3rfe_A           33 TTELVLTGNNLTALPPGL-----LDALPALRTAHLGANP   66 (130)
T ss_dssp             CSEEECTTSCCSSCCTTT-----GGGCTTCCEEECCSSC
T ss_pred             CCEEECCCCcCCccChhh-----hhhccccCEEEecCCC
Confidence            444444444444444443     4444444444444443

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.31  E-value=0.0081  Score=43.94  Aligned_cols=37  Identities=22%  Similarity=0.320  Sum_probs=19.2

Q ss_pred             CCCEEecCCCCCCCccCcchhcCCCCCceEEccCCccc
Q 037941          137 RLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTH  174 (308)
Q Consensus       137 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~  174 (308)
                      +|+.|++++|. ++.+|.+.+..+++|+.|++.+|...
T Consensus        32 ~l~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           32 DTTELVLTGNN-LTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TCSEEECTTSC-CSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             CCCEEECCCCc-CCccChhhhhhccccCEEEecCCCee
Confidence            34555555554 44555544555555555555555443

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.18  E-value=0.0025  Score=50.21  Aligned_cols=16  Identities=6%  Similarity=0.129  Sum_probs=7.4

Q ss_pred             hhhcCCCCCEEEeeec
Q 037941          187 ELNQLSRLTTLEMLIL  202 (308)
Q Consensus       187 ~l~~l~~L~~L~l~~~  202 (308)
                      .+..-+.|+.|+++.+
T Consensus       152 aL~~N~tL~~L~l~~~  167 (197)
T 1pgv_A          152 AIEENESLLRVGISFA  167 (197)
T ss_dssp             HHHHCSSCCEEECCCC
T ss_pred             HHHhCCCcCeEeccCC
Confidence            3344444555555443

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=95.64  E-value=0.019  Score=45.15  Aligned_cols=87  Identities=14%  Similarity=0.126  Sum_probs=51.5

Q ss_pred             cccccEEeecCC-cCc-----ccchhhhCcCCCCEEecCCCCCCCccCcc----hhcCCCCCceEEccCCcccccccCCc
Q 037941          112 LKKLVIFSFRNS-HIE-----QLPEEIGQLTRLKLLDLSTCSKLKSIRPN----VISNLPRLEELYMGNSFTHWEVEGQN  181 (308)
Q Consensus       112 l~~L~~L~l~~~-~i~-----~l~~~~~~l~~L~~L~l~~~~~~~~~~~~----~~~~l~~L~~L~l~~~~~~~~~~~~~  181 (308)
                      -+.|++|+++++ .+.     .+...+..-+.|+.|++++|. ++.....    .+..-+.|++|+++.|.|.+..   .
T Consensus        40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~-igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~G---a  115 (197)
T 1pgv_A           40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTA-ISDSEARGLIELIETSPSLRVLNVESNFLTPEL---L  115 (197)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSC-CBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHH---H
T ss_pred             CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCC-CChHHHHHHHHHHhcCCccCeEecCCCcCCHHH---H
Confidence            456777777664 554     344556666778888887776 4432211    1334467888888888777221   1


Q ss_pred             ccchhhhhcCCCCCEEEeeec
Q 037941          182 NASLAELNQLSRLTTLEMLIL  202 (308)
Q Consensus       182 ~~~~~~l~~l~~L~~L~l~~~  202 (308)
                      ......+..-..|++|+++++
T Consensus       116 ~ala~aL~~N~tL~~L~L~n~  136 (197)
T 1pgv_A          116 ARLLRSTLVTQSIVEFKADNQ  136 (197)
T ss_dssp             HHHHHHTTTTCCCSEEECCCC
T ss_pred             HHHHHHHhhCCceeEEECCCC
Confidence            222345555556888888754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	308
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	3e-05
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	4e-04
d1m9la_	198	c.10.3.1 (A:) Outer arm dynein light chain 1 {Gree	4e-04
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	0.002
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	0.002

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.4 bits (98), Expect = 3e-05
 Identities = 25/113 (22%), Positives = 43/113 (38%), Gaps = 13/113 (11%)

Query: 87  QVLSLNGFHFPSLPSTLGDVATVGVLKKLVIFSFRNSHIEQLPEEIGQLTRLKLLDLSTC 146
           Q L L G +    P   G + + GV+     F    S ++Q   E     R++ +DLS  
Sbjct: 3   QTLDLTGKNL--HPDVTGRLLSQGVI----AFRCPRSFMDQPLAEHFSPFRVQHMDLSNS 56

Query: 147 SKLKSIRPNVISNLPRLEELYMGNSFTHWEVEGQNNASLAELNQLSRLTTLEM 199
               S    ++S   +L+ L         E    ++  +  L + S L  L +
Sbjct: 57  VIEVSTLHGILSQCSKLQNL-------SLEGLRLSDPIVNTLAKNSNLVRLNL 102

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.4 bits (93), Expect = 2e-04
 Identities = 23/159 (14%), Positives = 51/159 (32%), Gaps = 44/159 (27%)

Query: 49  IQELPEKLECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPST------ 102
           ++++        L    L + ++S + P     G+  L  L L      ++         
Sbjct: 231 LKDIGTLASLTNLTDLDLANNQISNLAP---LSGLTKLTELKLGANQISNISPLAGLTAL 287

Query: 103 -------------------------------LGDVATVGVLKKLVIFSFRNSHIEQLPEE 131
                                          + D++ V  L KL    F N+ +  +   
Sbjct: 288 TNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFANNKVSDVSS- 346

Query: 132 IGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGN 170
           +  LT +  L      ++  + P  ++NL R+ +L + +
Sbjct: 347 LANLTNINWLSAGHN-QISDLTP--LANLTRITQLGLND 382

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 39.4 bits (90), Expect = 4e-04
 Identities = 21/147 (14%), Positives = 44/147 (29%), Gaps = 14/147 (9%)

Query: 17  HMFNIQIISDLREVFEDLMQKDPIAISHPCRDIQELPEKLECPKLKLFFLFSEKLSLVIP 76
                   S       D    D   +      +                L+    S    
Sbjct: 217 KTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEI 276

Query: 77  DLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKKLVIFSFRNSHIEQLPEEIGQLT 136
               +  PSL+ L+++      LP+          L++L+      +H+ ++PE    L 
Sbjct: 277 RSLCDLPPSLEELNVSNNKLIELPALPPR------LERLIA---SFNHLAEVPELPQNLK 327

Query: 137 RLKLLDLSTCSKLKSIRPNVISNLPRL 163
           +   L +     L+   P++  ++  L
Sbjct: 328 Q---LHVEYN-PLREF-PDIPESVEDL 349

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Length = 198

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

 Score = 38.5 bits (88), Expect = 4e-04
 Identities = 13/62 (20%), Positives = 24/62 (38%), Gaps = 3/62 (4%)

Query: 114 KLVIFSFRNSHIEQLPEEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFT 173
           + V        IE++   +  L   K L LS  + ++ I    +S +  L  L +G +  
Sbjct: 26  EKVELHGMIPPIEKMDATLSTLKACKHLALS-TNNIEKISS--LSGMENLRILSLGRNLI 82

Query: 174 HW 175
             
Sbjct: 83  KK 84

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 37.0 bits (84), Expect = 0.002
 Identities = 15/53 (28%), Positives = 21/53 (39%), Gaps = 3/53 (5%)

Query: 121 RNSHIEQLPEEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEEL-YMGNSF 172
            N     LP+ + QL  L  L++S  +    I P    NL R +   Y  N  
Sbjct: 253 NNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI-PQ-GGNLQRFDVSAYANNKC 303

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.9 bits (81), Expect = 0.002
 Identities = 7/54 (12%), Positives = 14/54 (25%)

Query: 122 NSHIEQLPEEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHW 175
                     +     L  L +     L+ +    +  L  L  L +  S   +
Sbjct: 17  RDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRF 70

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	308
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.84
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.83
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.83
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.83
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.83
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.83
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.81
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.81
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.79
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.76
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.75
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.75
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.72
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.72
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.72
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.71
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.7
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.63
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.62
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.62
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.59
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.57
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.56
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.56
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.55
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.53
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.49
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.48
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.34
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.32
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.21
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.15
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.02
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.0
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.91
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.87
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.08
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.98
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.6
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.39
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.79
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.64

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.84  E-value=1.8e-19  Score=157.59  Aligned_cols=175  Identities=19%  Similarity=0.216  Sum_probs=121.2

Q ss_pred             cccccccccEEeecCCcCcccchhhhCcCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCcccccccCCcccchhh
Q 037941          108 TVGVLKKLVIFSFRNSHIEQLPEEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEVEGQNNASLAE  187 (308)
Q Consensus       108 ~l~~l~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~  187 (308)
                      ....+++++++++++|.++.++. ...+++|+.|++++|. ++.++.  +..+++|+.+++++|.+.+         ...
T Consensus       192 ~~~~l~~~~~l~l~~n~i~~~~~-~~~~~~L~~L~l~~n~-l~~~~~--l~~l~~L~~L~l~~n~l~~---------~~~  258 (384)
T d2omza2         192 VLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQ-LKDIGT--LASLTNLTDLDLANNQISN---------LAP  258 (384)
T ss_dssp             GGGGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSC-CCCCGG--GGGCTTCSEEECCSSCCCC---------CGG
T ss_pred             ccccccccceeeccCCccCCCCc-ccccCCCCEEECCCCC-CCCcch--hhcccccchhccccCccCC---------CCc
Confidence            34556777788888887776655 5677889999999987 666664  7888999999999998772         234


Q ss_pred             hhcCCCCCEEEeeeccCccccchhhccCCceeEeeccCccc--ccCCCCcCceEEEeecCchhhhhhHHHHhcccceeec
Q 037941          188 LNQLSRLTTLEMLILDAQVMPRELFSLGLERNKIFLGDVWS--WTGKYETSRTLKLKLDNRMYLEHGIKMLLRRTEDLHL  265 (308)
Q Consensus       188 l~~l~~L~~L~l~~~~~~~~p~~~~~~~L~~l~i~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l  265 (308)
                      +..+++|+.|+++++.+..++.......++.+....+.+..  ....+++++.|+++.|..... ..+.. +++|++|++
T Consensus       259 ~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~~~n~l~~~~~~~~~~~l~~L~ls~n~l~~l-~~l~~-l~~L~~L~L  336 (384)
T d2omza2         259 LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDI-SPVSS-LTKLQRLFF  336 (384)
T ss_dssp             GTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSCC-GGGGG-CTTCCEEEC
T ss_pred             ccccccCCEeeccCcccCCCCccccccccccccccccccccccccchhcccCeEECCCCCCCCC-ccccc-CCCCCEEEC
Confidence            67788899999988888777765555666666665544332  255667777777777655442 23333 477888888


Q ss_pred             CCccchhhhhhccCCCCCCcccEEecccccccccccc
Q 037941          266 DKLNGLQNVLHELDGEGFPRLKHLLVQNASEILYIVS  302 (308)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~  302 (308)
                      +++ .++.+. .+  +.+++|++|++++| +++.++.
T Consensus       337 ~~n-~l~~l~-~l--~~l~~L~~L~l~~N-~l~~l~~  368 (384)
T d2omza2         337 ANN-KVSDVS-SL--ANLTNINWLSAGHN-QISDLTP  368 (384)
T ss_dssp             CSS-CCCCCG-GG--GGCTTCCEEECCSS-CCCBCGG
T ss_pred             CCC-CCCCCh-hH--cCCCCCCEEECCCC-cCCCChh
Confidence            774 555543 23  45777888888776 5666654

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.83  E-value=1.3e-20  Score=160.80  Aligned_cols=244  Identities=14%  Similarity=0.151  Sum_probs=187.7

Q ss_pred             CCCeeEEeecCCCC---CCCCcC-CCCCccEEEecC-CCCcCCCCchhhcCCCCccEEEccCCCCCCCCCCCCCcccccc
Q 037941           37 KDPIAISHPCRDIQ---ELPEKL-ECPKLKLFFLFS-EKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGV  111 (308)
Q Consensus        37 ~~l~~L~l~~~~~~---~~~~~~-~~~~L~~L~l~~-~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~~~~l~~  111 (308)
                      .+++.|+++++.+.   .+|+.+ ++++|++|++++ |.+++.+|..+ .++++|++|++++|.+..+++..     +..
T Consensus        50 ~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i-~~L~~L~~L~Ls~N~l~~~~~~~-----~~~  123 (313)
T d1ogqa_          50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAI-AKLTQLHYLYITHTNVSGAIPDF-----LSQ  123 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGG-GGCTTCSEEEEEEECCEEECCGG-----GGG
T ss_pred             EEEEEEECCCCCCCCCCCCChHHhcCcccccccccccccccccccccc-ccccccchhhhcccccccccccc-----ccc
Confidence            36889999999884   477777 999999999987 78888899886 68999999999999999765543     888


Q ss_pred             cccccEEeecCCcCc-ccchhhhCcCCCCEEecCCCCCCCccCcchhcCCCCC-ceEEccCCcccccccCCcccchhhhh
Q 037941          112 LKKLVIFSFRNSHIE-QLPEEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRL-EELYMGNSFTHWEVEGQNNASLAELN  189 (308)
Q Consensus       112 l~~L~~L~l~~~~i~-~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L-~~L~l~~~~~~~~~~~~~~~~~~~l~  189 (308)
                      +.+|+++++++|.+. .+|..++.+++++.+++++|.....+|.. +..+..+ +.++++.|++.+..+       ..+.
T Consensus       124 ~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~-~~~l~~l~~~l~~~~n~l~~~~~-------~~~~  195 (313)
T d1ogqa_         124 IKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDS-YGSFSKLFTSMTISRNRLTGKIP-------PTFA  195 (313)
T ss_dssp             CTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGG-GGCCCTTCCEEECCSSEEEEECC-------GGGG
T ss_pred             hhhhcccccccccccccCchhhccCcccceeeccccccccccccc-ccccccccccccccccccccccc-------cccc
Confidence            999999999999866 88889999999999999999866678877 6667665 889999998884433       4555


Q ss_pred             cCCCCCEEEeeeccC-ccccchhhc-cCCceeEeeccCcc---cccCCCCcCceEEEeecCch-hhhhhHHHHhccccee
Q 037941          190 QLSRLTTLEMLILDA-QVMPRELFS-LGLERNKIFLGDVW---SWTGKYETSRTLKLKLDNRM-YLEHGIKMLLRRTEDL  263 (308)
Q Consensus       190 ~l~~L~~L~l~~~~~-~~~p~~~~~-~~L~~l~i~~~~~~---~~~~~~~~L~~L~L~~~~~~-~~~~~~~~~~~~L~~L  263 (308)
                      .+..+ .+++..+.. ..+|..... .+++.+.+..+.+.   ...+.+++++.|+|+.|... ..+..+..+ ++|++|
T Consensus       196 ~l~~~-~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L-~~L~~L  273 (313)
T d1ogqa_         196 NLNLA-FVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQL-KFLHSL  273 (313)
T ss_dssp             GCCCS-EEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGC-TTCCEE
T ss_pred             ccccc-ccccccccccccccccccccccccccccccccccccccccccccccccccCccCeecccCChHHhCC-CCCCEE
Confidence            55544 678777653 345555444 77888877655432   23566789999999998876 345666665 999999


Q ss_pred             ecCCccchhhhhhccCCCCCCcccEEeccccccccc
Q 037941          264 HLDKLNGLQNVLHELDGEGFPRLKHLLVQNASEILY  299 (308)
Q Consensus       264 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~  299 (308)
                      ++++ +.++...+++  +.+++|+.+.+.+++.+.-
T Consensus       274 ~Ls~-N~l~g~iP~~--~~L~~L~~l~l~~N~~l~g  306 (313)
T d1ogqa_         274 NVSF-NNLCGEIPQG--GNLQRFDVSAYANNKCLCG  306 (313)
T ss_dssp             ECCS-SEEEEECCCS--TTGGGSCGGGTCSSSEEES
T ss_pred             ECcC-CcccccCCCc--ccCCCCCHHHhCCCccccC
Confidence            9998 5555333333  5678999999999977654

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=6.7e-20  Score=154.28  Aligned_cols=233  Identities=16%  Similarity=0.174  Sum_probs=180.3

Q ss_pred             cceeecccchhhHhhhhcCCCCeeEEeecCCCCCCCCcC--CCCCccEEEecCCCCcCCCCchhhcCCCCccEEEcc-CC
Q 037941           18 MFNIQIISDLREVFEDLMQKDPIAISHPCRDIQELPEKL--ECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLN-GF   94 (308)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~-~~   94 (308)
                      +...+.+.++..+|. ..++.+++|++++|.+..+|+..  ++++|++|++++|.+.. ++...+..+..++.++.. .+
T Consensus        14 ~~v~c~~~~L~~iP~-~ip~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~-i~~~~~~~~~~~~~l~~~~~~   91 (284)
T d1ozna_          14 VTTSCPQQGLQAVPV-GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLAR-IDAAAFTGLALLEQLDLSDNA   91 (284)
T ss_dssp             CEEECCSSCCSSCCT-TCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCE-ECTTTTTTCTTCCEEECCSCT
T ss_pred             eEEEcCCCCCCccCC-CCCCCCCEEECcCCcCCCCCHHHhhccccccccccccccccc-ccccccccccccccccccccc
Confidence            344566778888884 56788999999999999888754  89999999999999874 444555788889998765 55


Q ss_pred             CCCCCCCCCCCcccccccccccEEeecCCcCcccc-hhhhCcCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCcc
Q 037941           95 HFPSLPSTLGDVATVGVLKKLVIFSFRNSHIEQLP-EEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFT  173 (308)
Q Consensus        95 ~~~~lp~~~~~~~~l~~l~~L~~L~l~~~~i~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~  173 (308)
                      .+..+++..     +..+++|++|++++|.+..++ ..+....+|+.+++++|. ++.+|.+.+..+++|++|++++|.+
T Consensus        92 ~~~~l~~~~-----~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~-l~~i~~~~f~~~~~L~~L~l~~N~l  165 (284)
T d1ozna_          92 QLRSVDPAT-----FHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNA-LQALPDDTFRDLGNLTHLFLHGNRI  165 (284)
T ss_dssp             TCCCCCTTT-----TTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             ccccccchh-----hcccccCCEEecCCcccccccccccchhcccchhhhcccc-ccccChhHhccccchhhcccccCcc
Confidence            667776654     889999999999999988665 457778999999999998 7888877788999999999999998


Q ss_pred             cccccCCcccchhhhhcCCCCCEEEeeeccCccccchhhc--cCCceeEeeccCccc----ccCCCCcCceEEEeecCch
Q 037941          174 HWEVEGQNNASLAELNQLSRLTTLEMLILDAQVMPRELFS--LGLERNKIFLGDVWS----WTGKYETSRTLKLKLDNRM  247 (308)
Q Consensus       174 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~~~~--~~L~~l~i~~~~~~~----~~~~~~~L~~L~L~~~~~~  247 (308)
                      ...++       ..+..+++|+.+++++|.++.++...+.  ++|+.+++..+.+..    ++..+++|++++|++|...
T Consensus       166 ~~l~~-------~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~  238 (284)
T d1ozna_         166 SSVPE-------RAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV  238 (284)
T ss_dssp             CEECT-------TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred             cccch-------hhhccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCC
Confidence            83332       5778999999999999998877554443  889999987776543    4667889999999987654


Q ss_pred             hhhhhHHHHhcccceeecC
Q 037941          248 YLEHGIKMLLRRTEDLHLD  266 (308)
Q Consensus       248 ~~~~~~~~~~~~L~~L~l~  266 (308)
                      . +-...++...++++...
T Consensus       239 C-~C~~~~l~~~l~~~~~~  256 (284)
T d1ozna_         239 C-DCRARPLWAWLQKFRGS  256 (284)
T ss_dssp             C-SGGGHHHHHHHHHCCSE
T ss_pred             C-CccchHHHHHHHhCcCC
Confidence            3 22333333445555443

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=4.3e-20  Score=154.03  Aligned_cols=184  Identities=21%  Similarity=0.214  Sum_probs=139.4

Q ss_pred             ecccchhhHhhhhcCCCCeeEEeecCCCCCCCCc-C-CCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCC
Q 037941           22 QIISDLREVFEDLMQKDPIAISHPCRDIQELPEK-L-ECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSL   99 (308)
Q Consensus        22 ~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l   99 (308)
                      |.+.++..+|+ ...+++++|++++|.+..+++. + .+++|++|++++|.++ .++.  +..+++|++|++++|.+...
T Consensus        17 C~~~~L~~iP~-~lp~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~-~l~~--~~~l~~L~~L~Ls~N~l~~~   92 (266)
T d1p9ag_          17 CDKRNLTALPP-DLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQV--DGTLPVLGTLDLSHNQLQSL   92 (266)
T ss_dssp             CTTSCCSSCCS-CCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEEC--CSCCTTCCEEECCSSCCSSC
T ss_pred             ccCCCCCeeCc-CcCcCCCEEECcCCcCCCcCHHHhhcccccccccccccccc-cccc--cccccccccccccccccccc
Confidence            44667777773 3457888899988888887754 3 8888999999888876 4443  35788889999988888887


Q ss_pred             CCCCCCcccccccccccEEeecCCcCcccc-hhhhCcCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCccccccc
Q 037941          100 PSTLGDVATVGVLKKLVIFSFRNSHIEQLP-EEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEVE  178 (308)
Q Consensus       100 p~~~~~~~~l~~l~~L~~L~l~~~~i~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~  178 (308)
                      |..      +..+++|++|+++++.+..++ ..+..+.+++.|++++|. +..++...+..+++|+.+++++|.+...++
T Consensus        93 ~~~------~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~-l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~  165 (266)
T d1p9ag_          93 PLL------GQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE-LKTLPPGLLTPTPKLEKLSLANNNLTELPA  165 (266)
T ss_dssp             CCC------TTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSCCSCCCT
T ss_pred             ccc------cccccccccccccccccceeeccccccccccccccccccc-cceeccccccccccchhcccccccccccCc
Confidence            776      788888889988888887655 446677888888888887 777777767788888888888888873332


Q ss_pred             CCcccchhhhhcCCCCCEEEeeeccCccccchhhc-cCCceeEeec
Q 037941          179 GQNNASLAELNQLSRLTTLEMLILDAQVMPRELFS-LGLERNKIFL  223 (308)
Q Consensus       179 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~~~~-~~L~~l~i~~  223 (308)
                             ..+..+++|++|++++|+++.+|..++. .+|+.+.+..
T Consensus       166 -------~~~~~l~~L~~L~Ls~N~L~~lp~~~~~~~~L~~L~L~~  204 (266)
T d1p9ag_         166 -------GLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHG  204 (266)
T ss_dssp             -------TTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCS
T ss_pred             -------cccccccccceeecccCCCcccChhHCCCCCCCEEEecC
Confidence                   4567788888899888888888877554 4455544443

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.83  E-value=4.2e-19  Score=150.79  Aligned_cols=255  Identities=14%  Similarity=0.143  Sum_probs=193.9

Q ss_pred             ecccchhhHhhhhcCCCCeeEEeecCCCCCCCCc-C-CCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCC
Q 037941           22 QIISDLREVFEDLMQKDPIAISHPCRDIQELPEK-L-ECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSL   99 (308)
Q Consensus        22 ~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l   99 (308)
                      |.+.++..+|. ..++++++|++++|.+.++|+. + .+++|++|++++|.+.. +++..|.++++|++|++++|+++.+
T Consensus        17 C~~~~L~~lP~-~l~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~-i~~~~f~~l~~L~~L~l~~n~l~~l   94 (305)
T d1xkua_          17 CSDLGLEKVPK-DLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISK-ISPGAFAPLVKLERLYLSKNQLKEL   94 (305)
T ss_dssp             CTTSCCCSCCC-SCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCC-BCTTTTTTCTTCCEEECCSSCCSBC
T ss_pred             ecCCCCCccCC-CCCCCCCEEECcCCcCCCcChhHhhccccccccccccccccc-cchhhhhCCCccCEecccCCccCcC
Confidence            34567888885 4578999999999999999874 4 89999999999999884 4444458999999999999999999


Q ss_pred             CCCCCCcccccccccccEEeecCCcCcccchh-hhCcCCCCEEecCCCCCC-CccCcchhcCCCCCceEEccCCcccccc
Q 037941          100 PSTLGDVATVGVLKKLVIFSFRNSHIEQLPEE-IGQLTRLKLLDLSTCSKL-KSIRPNVISNLPRLEELYMGNSFTHWEV  177 (308)
Q Consensus       100 p~~~~~~~~l~~l~~L~~L~l~~~~i~~l~~~-~~~l~~L~~L~l~~~~~~-~~~~~~~~~~l~~L~~L~l~~~~~~~~~  177 (308)
                      |...        ...++.|++..|.+..++.. +.....++.++...+... .......+..+++|+.+++.+|.+...+
T Consensus        95 ~~~~--------~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~  166 (305)
T d1xkua_          95 PEKM--------PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIP  166 (305)
T ss_dssp             CSSC--------CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCC
T ss_pred             ccch--------hhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCccccC
Confidence            9872        46788999999999977754 566778888988877522 2222334778899999999999877221


Q ss_pred             cCCcccchhhhhcCCCCCEEEeeeccCccccchhhc--cCCceeEeeccCcc----cccCCCCcCceEEEeecCchhhhh
Q 037941          178 EGQNNASLAELNQLSRLTTLEMLILDAQVMPRELFS--LGLERNKIFLGDVW----SWTGKYETSRTLKLKLDNRMYLEH  251 (308)
Q Consensus       178 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~~~~--~~L~~l~i~~~~~~----~~~~~~~~L~~L~L~~~~~~~~~~  251 (308)
                      .          ..+++|+.|++++|.....+...+.  ..++.|.+..+.+.    .++..+++|+.|+|+.|.....+.
T Consensus       167 ~----------~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~~lp~  236 (305)
T d1xkua_         167 Q----------GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPG  236 (305)
T ss_dssp             S----------SCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCT
T ss_pred             c----------ccCCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeeccccccccccc
Confidence            1          2367899999999987666544433  77888887666543    356778999999999997776666


Q ss_pred             hHHHHhcccceeecCCccchhhhhhcc-C----CCCCCcccEEeccccccccc
Q 037941          252 GIKMLLRRTEDLHLDKLNGLQNVLHEL-D----GEGFPRLKHLLVQNASEILY  299 (308)
Q Consensus       252 ~~~~~~~~L~~L~l~~~~~~~~~~~~~-~----~~~~~~L~~L~l~~c~~l~~  299 (308)
                      ++..+ ++|++|++++ +.++.+.... .    ....+.|+.|++.+++ ++.
T Consensus       237 ~l~~l-~~L~~L~Ls~-N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~-~~~  286 (305)
T d1xkua_         237 GLADH-KYIQVVYLHN-NNISAIGSNDFCPPGYNTKKASYSGVSLFSNP-VQY  286 (305)
T ss_dssp             TTTTC-SSCCEEECCS-SCCCCCCTTSSSCSSCCTTSCCCSEEECCSSS-SCG
T ss_pred             ccccc-cCCCEEECCC-CccCccChhhccCcchhcccCCCCEEECCCCc-Ccc
Confidence            66664 9999999999 6777764422 1    1346789999999985 443

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.83  E-value=3.9e-19  Score=155.41  Aligned_cols=168  Identities=18%  Similarity=0.259  Sum_probs=110.7

Q ss_pred             cccccccccEEeecCCcCcccchhhhCcCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCcccccccCCcccchhh
Q 037941          108 TVGVLKKLVIFSFRNSHIEQLPEEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEVEGQNNASLAE  187 (308)
Q Consensus       108 ~l~~l~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~  187 (308)
                      .....++|++|++++|.++.++. +..+++|+.+++++|. ++.++.  ++.+++|+.++++++.+.         ....
T Consensus       214 ~~~~~~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~--~~~~~~L~~L~l~~~~l~---------~~~~  280 (384)
T d2omza2         214 PLGILTNLDELSLNGNQLKDIGT-LASLTNLTDLDLANNQ-ISNLAP--LSGLTKLTELKLGANQIS---------NISP  280 (384)
T ss_dssp             GGGGCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECCSSC-CCCCGG--GTTCTTCSEEECCSSCCC---------CCGG
T ss_pred             cccccCCCCEEECCCCCCCCcch-hhcccccchhccccCc-cCCCCc--ccccccCCEeeccCcccC---------CCCc
Confidence            34556777778887777776653 6677777888877776 555554  667777888877777666         1234


Q ss_pred             hhcCCCCCEEEeeeccCccccchhhccCCceeEeeccCcccc--cCCCCcCceEEEeecCchhhhhhHHHHhcccceeec
Q 037941          188 LNQLSRLTTLEMLILDAQVMPRELFSLGLERNKIFLGDVWSW--TGKYETSRTLKLKLDNRMYLEHGIKMLLRRTEDLHL  265 (308)
Q Consensus       188 l~~l~~L~~L~l~~~~~~~~p~~~~~~~L~~l~i~~~~~~~~--~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l  265 (308)
                      +..++.++.+.+..+.+..++......+++.+++..+.+...  ...+++|+.|+++.|.... ...+..+ ++|++|++
T Consensus       281 ~~~~~~l~~l~~~~n~l~~~~~~~~~~~l~~L~ls~n~l~~l~~l~~l~~L~~L~L~~n~l~~-l~~l~~l-~~L~~L~l  358 (384)
T d2omza2         281 LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFANNKVSD-VSSLANL-TNINWLSA  358 (384)
T ss_dssp             GTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECCSSCCCC-CGGGGGC-TTCCEEEC
T ss_pred             cccccccccccccccccccccccchhcccCeEECCCCCCCCCcccccCCCCCEEECCCCCCCC-ChhHcCC-CCCCEEEC
Confidence            566777777777777776666544447777777766655443  4567777788777775443 2234443 77788887


Q ss_pred             CCccchhhhhhccCCCCCCcccEEecccc
Q 037941          266 DKLNGLQNVLHELDGEGFPRLKHLLVQNA  294 (308)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~c  294 (308)
                      ++ +.++.+.+   ..++++|+.|+++++
T Consensus       359 ~~-N~l~~l~~---l~~l~~L~~L~L~~N  383 (384)
T d2omza2         359 GH-NQISDLTP---LANLTRITQLGLNDQ  383 (384)
T ss_dssp             CS-SCCCBCGG---GTTCTTCSEEECCCE
T ss_pred             CC-CcCCCChh---hccCCCCCEeeCCCC
Confidence            76 45555432   256777777777764

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.81  E-value=6.2e-19  Score=149.72  Aligned_cols=244  Identities=17%  Similarity=0.223  Sum_probs=191.1

Q ss_pred             CeeEEeecCCCCCCCCcCCCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCCCCCCcccccccccccEE
Q 037941           39 PIAISHPCRDIQELPEKLECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKKLVIF  118 (308)
Q Consensus        39 l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~~~~l~~l~~L~~L  118 (308)
                      .+.++=++..++++|..+ .+++++|++++|.++ .+++..|.++++|++|++++|.+..+++..     +..+++|++|
T Consensus        12 ~~~~~C~~~~L~~lP~~l-~~~l~~L~Ls~N~i~-~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~-----f~~l~~L~~L   84 (305)
T d1xkua_          12 LRVVQCSDLGLEKVPKDL-PPDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKISPGA-----FAPLVKLERL   84 (305)
T ss_dssp             TTEEECTTSCCCSCCCSC-CTTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECCSSCCCCBCTTT-----TTTCTTCCEE
T ss_pred             CCEEEecCCCCCccCCCC-CCCCCEEECcCCcCC-CcChhHhhccccccccccccccccccchhh-----hhCCCccCEe
Confidence            344555556678888765 368999999999987 666655689999999999999999886543     8999999999


Q ss_pred             eecCCcCcccchhhhCcCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCcccccccCCcccchhhhhcCCCCCEEE
Q 037941          119 SFRNSHIEQLPEEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEVEGQNNASLAELNQLSRLTTLE  198 (308)
Q Consensus       119 ~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~  198 (308)
                      ++++|.++.+|..  ....++.|...+|. +..++...+.....++.+....+.....     ......+..+++|+.++
T Consensus        85 ~l~~n~l~~l~~~--~~~~l~~L~~~~n~-l~~l~~~~~~~~~~~~~l~~~~n~~~~~-----~~~~~~~~~l~~L~~l~  156 (305)
T d1xkua_          85 YLSKNQLKELPEK--MPKTLQELRVHENE-ITKVRKSVFNGLNQMIVVELGTNPLKSS-----GIENGAFQGMKKLSYIR  156 (305)
T ss_dssp             ECCSSCCSBCCSS--CCTTCCEEECCSSC-CCBBCHHHHTTCTTCCEEECCSSCCCGG-----GBCTTGGGGCTTCCEEE
T ss_pred             cccCCccCcCccc--hhhhhhhhhccccc-hhhhhhhhhhcccccccccccccccccc-----CCCccccccccccCccc
Confidence            9999999999874  34689999999988 7778876677788888898887754421     12335678899999999


Q ss_pred             eeeccCccccchhhccCCceeEeeccCcc----cccCCCCcCceEEEeecCchhhhhhHHHHhcccceeecCCccchhhh
Q 037941          199 MLILDAQVMPRELFSLGLERNKIFLGDVW----SWTGKYETSRTLKLKLDNRMYLEHGIKMLLRRTEDLHLDKLNGLQNV  274 (308)
Q Consensus       199 l~~~~~~~~p~~~~~~~L~~l~i~~~~~~----~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  274 (308)
                      ++++.+..+|... ..+|+.|++..+...    ..+..++.++.|+++.|...........-+++|++|++++ +.++.+
T Consensus       157 l~~n~l~~l~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~-N~L~~l  234 (305)
T d1xkua_         157 IADTNITTIPQGL-PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNN-NKLVKV  234 (305)
T ss_dssp             CCSSCCCSCCSSC-CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCS-SCCSSC
T ss_pred             cccCCccccCccc-CCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeeccc-cccccc
Confidence            9999998888765 478999988655432    3456778999999998876665444433459999999999 467776


Q ss_pred             hhccCCCCCCcccEEecccccccccccc
Q 037941          275 LHELDGEGFPRLKHLLVQNASEILYIVS  302 (308)
Q Consensus       275 ~~~~~~~~~~~L~~L~l~~c~~l~~i~~  302 (308)
                      +..+  ..+++|++|++++| +|++|+.
T Consensus       235 p~~l--~~l~~L~~L~Ls~N-~i~~i~~  259 (305)
T d1xkua_         235 PGGL--ADHKYIQVVYLHNN-NISAIGS  259 (305)
T ss_dssp             CTTT--TTCSSCCEEECCSS-CCCCCCT
T ss_pred             cccc--ccccCCCEEECCCC-ccCccCh
Confidence            5433  67899999999998 7998864

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=4.3e-19  Score=147.87  Aligned_cols=194  Identities=18%  Similarity=0.175  Sum_probs=161.2

Q ss_pred             CCCCeeEEeecCCCCCCCCcCCCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCCCCCCcccccccccc
Q 037941           36 QKDPIAISHPCRDIQELPEKLECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKKL  115 (308)
Q Consensus        36 ~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~~~~l~~l~~L  115 (308)
                      ......++-++++++.+|+.+. +++++|++++|.++ .++...|.++++|++|++++|.++.+|.       ++.+++|
T Consensus         9 ~~~~~~v~C~~~~L~~iP~~lp-~~l~~L~Ls~N~i~-~l~~~~f~~l~~L~~L~L~~N~l~~l~~-------~~~l~~L   79 (266)
T d1p9ag_           9 VASHLEVNCDKRNLTALPPDLP-KDTTILHLSENLLY-TFSLATLMPYTRLTQLNLDRAELTKLQV-------DGTLPVL   79 (266)
T ss_dssp             STTCCEEECTTSCCSSCCSCCC-TTCCEEECTTSCCS-EEEGGGGTTCTTCCEEECTTSCCCEEEC-------CSCCTTC
T ss_pred             cCCCeEEEccCCCCCeeCcCcC-cCCCEEECcCCcCC-CcCHHHhhcccccccccccccccccccc-------ccccccc
Confidence            4556667888888888887553 58999999999998 5665556899999999999999998876       6779999


Q ss_pred             cEEeecCCcCcccchhhhCcCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCcccccccCCcccchhhhhcCCCCC
Q 037941          116 VIFSFRNSHIEQLPEEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEVEGQNNASLAELNQLSRLT  195 (308)
Q Consensus       116 ~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~  195 (308)
                      ++|++++|.++..+..+..+++|+.|+++++. ...++...+..+.+++.|++.+|.+...++       ..+..+++++
T Consensus        80 ~~L~Ls~N~l~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~-------~~~~~l~~l~  151 (266)
T d1p9ag_          80 GTLDLSHNQLQSLPLLGQTLPALTVLDVSFNR-LTSLPLGALRGLGELQELYLKGNELKTLPP-------GLLTPTPKLE  151 (266)
T ss_dssp             CEEECCSSCCSSCCCCTTTCTTCCEEECCSSC-CCCCCSSTTTTCTTCCEEECTTSCCCCCCT-------TTTTTCTTCC
T ss_pred             cccccccccccccccccccccccccccccccc-cceeeccccccccccccccccccccceecc-------ccccccccch
Confidence            99999999999888889999999999999998 666766668889999999999998884332       4567889999


Q ss_pred             EEEeeeccCccccchhhc--cCCceeEeeccCcccc---cCCCCcCceEEEeecCc
Q 037941          196 TLEMLILDAQVMPRELFS--LGLERNKIFLGDVWSW---TGKYETSRTLKLKLDNR  246 (308)
Q Consensus       196 ~L~l~~~~~~~~p~~~~~--~~L~~l~i~~~~~~~~---~~~~~~L~~L~L~~~~~  246 (308)
                      .+++++|.++.+|...+.  .+|+.|++..+.+...   +..+++|+.|+|++|..
T Consensus       152 ~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~~lp~~~~~~~~L~~L~L~~Np~  207 (266)
T d1p9ag_         152 KLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPW  207 (266)
T ss_dssp             EEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCB
T ss_pred             hcccccccccccCccccccccccceeecccCCCcccChhHCCCCCCCEEEecCCCC
Confidence            999999999998877544  8899999987775443   44677889999988753

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.79  E-value=3.9e-19  Score=151.58  Aligned_cols=226  Identities=18%  Similarity=0.246  Sum_probs=173.5

Q ss_pred             CCccEEEecCCCCcC--CCCchhhcCCCCccEEEccC-CCCC-CCCCCCCCcccccccccccEEeecCCcCcc-cchhhh
Q 037941           59 PKLKLFFLFSEKLSL--VIPDLFFEGVPSLQVLSLNG-FHFP-SLPSTLGDVATVGVLKKLVIFSFRNSHIEQ-LPEEIG  133 (308)
Q Consensus        59 ~~L~~L~l~~~~~~~--~~~~~~~~~l~~L~~L~l~~-~~~~-~lp~~~~~~~~l~~l~~L~~L~l~~~~i~~-l~~~~~  133 (308)
                      .+++.|+++++.+.+  .+|..+ .++++|++|++++ |.+. .+|+.      ++++++|++|++++|.+.. .+..+.
T Consensus        50 ~~v~~L~L~~~~l~g~~~lp~~l-~~L~~L~~L~Ls~~N~l~g~iP~~------i~~L~~L~~L~Ls~N~l~~~~~~~~~  122 (313)
T d1ogqa_          50 YRVNNLDLSGLNLPKPYPIPSSL-ANLPYLNFLYIGGINNLVGPIPPA------IAKLTQLHYLYITHTNVSGAIPDFLS  122 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGG-GGCTTCSEEEEEEETTEESCCCGG------GGGCTTCSEEEEEEECCEEECCGGGG
T ss_pred             EEEEEEECCCCCCCCCCCCChHH-hcCccccccccccccccccccccc------cccccccchhhhcccccccccccccc
Confidence            479999999999876  467776 6899999999986 6776 89998      9999999999999999984 556688


Q ss_pred             CcCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCcccccccCCcccchhhhhcCCCC-CEEEeeeccCccc-cchh
Q 037941          134 QLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEVEGQNNASLAELNQLSRL-TTLEMLILDAQVM-PREL  211 (308)
Q Consensus       134 ~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L-~~L~l~~~~~~~~-p~~~  211 (308)
                      .+.+|+.+++++|.....+|.. ++.+++++.+++++|.+.+..       +..+..+..+ +.++++.|+++.. |..+
T Consensus       123 ~~~~L~~l~l~~N~~~~~~p~~-l~~l~~L~~l~l~~n~l~~~i-------p~~~~~l~~l~~~l~~~~n~l~~~~~~~~  194 (313)
T d1ogqa_         123 QIKTLVTLDFSYNALSGTLPPS-ISSLPNLVGITFDGNRISGAI-------PDSYGSFSKLFTSMTISRNRLTGKIPPTF  194 (313)
T ss_dssp             GCTTCCEEECCSSEEESCCCGG-GGGCTTCCEEECCSSCCEEEC-------CGGGGCCCTTCCEEECCSSEEEEECCGGG
T ss_pred             chhhhcccccccccccccCchh-hccCcccceeecccccccccc-------ccccccccccccccccccccccccccccc
Confidence            9999999999999877778876 899999999999999887432       3566666665 8889998887644 4444


Q ss_pred             hccCCceeEeec----cCcccccCCCCcCceEEEeecCchhhhhhHHHHhcccceeecCCccchh-hhhhccCCCCCCcc
Q 037941          212 FSLGLERNKIFL----GDVWSWTGKYETSRTLKLKLDNRMYLEHGIKMLLRRTEDLHLDKLNGLQ-NVLHELDGEGFPRL  286 (308)
Q Consensus       212 ~~~~L~~l~i~~----~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~~~L  286 (308)
                      .......+.+..    +..+.+...++.++.++++.+........+.. +++|+.|++++ +.++ .++..+  ..+++|
T Consensus       195 ~~l~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~-~~~L~~L~Ls~-N~l~g~iP~~l--~~L~~L  270 (313)
T d1ogqa_         195 ANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGL-SKNLNGLDLRN-NRIYGTLPQGL--TQLKFL  270 (313)
T ss_dssp             GGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCC-CTTCCEEECCS-SCCEECCCGGG--GGCTTC
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccCcc-CeecccCChHH--hCCCCC
Confidence            434445555432    23455677889999999988765544444433 48999999998 5555 444333  568999


Q ss_pred             cEEecccccccc-ccccCc
Q 037941          287 KHLLVQNASEIL-YIVSSV  304 (308)
Q Consensus       287 ~~L~l~~c~~l~-~i~~~~  304 (308)
                      ++|++++| ++. .||...
T Consensus       271 ~~L~Ls~N-~l~g~iP~~~  288 (313)
T d1ogqa_         271 HSLNVSFN-NLCGEIPQGG  288 (313)
T ss_dssp             CEEECCSS-EEEEECCCST
T ss_pred             CEEECcCC-cccccCCCcc
Confidence            99999998 566 777543

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=2e-17  Score=138.94  Aligned_cols=212  Identities=21%  Similarity=0.271  Sum_probs=167.4

Q ss_pred             eEEeecCCCCCCCCcCCCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCCCCCCcccccccccccEEee
Q 037941           41 AISHPCRDIQELPEKLECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKKLVIFSF  120 (308)
Q Consensus        41 ~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~~~~l~~l~~L~~L~l  120 (308)
                      .+..+++.++.+|..+. +++++|++++|.++ .++...|.++++|++|+++++.+..++...     +..+..++++.+
T Consensus        15 ~v~c~~~~L~~iP~~ip-~~~~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~-----~~~~~~~~~l~~   87 (284)
T d1ozna_          15 TTSCPQQGLQAVPVGIP-AASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARIDAAA-----FTGLALLEQLDL   87 (284)
T ss_dssp             EEECCSSCCSSCCTTCC-TTCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTT-----TTTCTTCCEEEC
T ss_pred             EEEcCCCCCCccCCCCC-CCCCEEECcCCcCC-CCCHHHhhcccccccccccccccccccccc-----cccccccccccc
Confidence            34566667788887553 57899999999997 667666689999999999999999777764     777888999887


Q ss_pred             cC-CcCcccc-hhhhCcCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCcccccccCCcccchhhhhcCCCCCEEE
Q 037941          121 RN-SHIEQLP-EEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEVEGQNNASLAELNQLSRLTTLE  198 (308)
Q Consensus       121 ~~-~~i~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~  198 (308)
                      .. +.++.++ ..+..+++|+.|++++|. +..++...+....+|+.+++++|.++..++       ..+..+++|+.|+
T Consensus        88 ~~~~~~~~l~~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~-------~~f~~~~~L~~L~  159 (284)
T d1ozna_          88 SDNAQLRSVDPATFHGLGRLHTLHLDRCG-LQELGPGLFRGLAALQYLYLQDNALQALPD-------DTFRDLGNLTHLF  159 (284)
T ss_dssp             CSCTTCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCT-------TTTTTCTTCCEEE
T ss_pred             ccccccccccchhhcccccCCEEecCCcc-cccccccccchhcccchhhhccccccccCh-------hHhccccchhhcc
Confidence            54 4577664 568899999999999998 666666657889999999999999884332       4678889999999


Q ss_pred             eeeccCccccchhhc--cCCceeEeeccCc----ccccCCCCcCceEEEeecCchhhhhhHHHHhcccceeecCC
Q 037941          199 MLILDAQVMPRELFS--LGLERNKIFLGDV----WSWTGKYETSRTLKLKLDNRMYLEHGIKMLLRRTEDLHLDK  267 (308)
Q Consensus       199 l~~~~~~~~p~~~~~--~~L~~l~i~~~~~----~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~  267 (308)
                      +++|.+..+|...+.  ++|+.+.+..+.+    +.++..++++++|+++.|...........-+++|++|++++
T Consensus       160 l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~  234 (284)
T d1ozna_         160 LHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLND  234 (284)
T ss_dssp             CCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCS
T ss_pred             cccCcccccchhhhccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecC
Confidence            999999888876654  8888888876654    34567788999999999877665544443358899999987

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.75  E-value=1.3e-17  Score=132.63  Aligned_cols=161  Identities=17%  Similarity=0.202  Sum_probs=131.8

Q ss_pred             cCCCCeeEEeecCCCCCCCCcCCCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCCCCCCccccccccc
Q 037941           35 MQKDPIAISHPCRDIQELPEKLECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKK  114 (308)
Q Consensus        35 ~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~~~~l~~l~~  114 (308)
                      ..++++.|++.++.+.+++....+++|++|++++|.+++ +++  ++++++|++|++++|.+..++.       +..+++
T Consensus        38 ~l~~l~~L~l~~~~i~~l~~l~~l~nL~~L~Ls~N~l~~-~~~--l~~l~~L~~L~l~~n~~~~~~~-------l~~l~~  107 (199)
T d2omxa2          38 DLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTD-ITP--LKNLTKLVDILMNNNQIADITP-------LANLTN  107 (199)
T ss_dssp             HHTTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCC-CGG--GTTCTTCCEEECCSSCCCCCGG-------GTTCTT
T ss_pred             HhcCCCEEECCCCCCCCccccccCCCcCcCccccccccC-ccc--ccCCcccccccccccccccccc-------cccccc
Confidence            367899999999999888765589999999999998874 343  4789999999999999888875       788999


Q ss_pred             ccEEeecCCcCcccchhhhCcCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCcccccccCCcccchhhhhcCCCC
Q 037941          115 LVIFSFRNSHIEQLPEEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEVEGQNNASLAELNQLSRL  194 (308)
Q Consensus       115 L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L  194 (308)
                      |++|+++++....++. +..+++|+.|++++|. +..++.  +..+++|+.|++.+|.+.+         +..+.++++|
T Consensus       108 L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~-l~~~~~--l~~~~~L~~L~l~~n~l~~---------l~~l~~l~~L  174 (199)
T d2omxa2         108 LTGLTLFNNQITDIDP-LKNLTNLNRLELSSNT-ISDISA--LSGLTSLQQLNFSSNQVTD---------LKPLANLTTL  174 (199)
T ss_dssp             CSEEECCSSCCCCCGG-GTTCTTCSEEECCSSC-CCCCGG--GTTCTTCSEEECCSSCCCC---------CGGGTTCTTC
T ss_pred             cccccccccccccccc-cchhhhhHHhhhhhhh-hccccc--ccccccccccccccccccC---------CccccCCCCC
Confidence            9999999998877654 7889999999999998 666664  7889999999999998872         2357889999


Q ss_pred             CEEEeeeccCccccchhhccCCce
Q 037941          195 TTLEMLILDAQVMPRELFSLGLER  218 (308)
Q Consensus       195 ~~L~l~~~~~~~~p~~~~~~~L~~  218 (308)
                      ++|++++|++++++.-...++|+.
T Consensus       175 ~~L~ls~N~i~~i~~l~~L~~L~~  198 (199)
T d2omxa2         175 ERLDISSNKVSDISVLAKLTNLES  198 (199)
T ss_dssp             CEEECCSSCCCCCGGGGGCTTCSE
T ss_pred             CEEECCCCCCCCCccccCCCCCCc
Confidence            999999998887764322255544

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.75  E-value=9.9e-18  Score=134.46  Aligned_cols=164  Identities=21%  Similarity=0.223  Sum_probs=129.8

Q ss_pred             CCCCeeEEeecCCCCCCCCcCCCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCCCCCCcccccccccc
Q 037941           36 QKDPIAISHPCRDIQELPEKLECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKKL  115 (308)
Q Consensus        36 ~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~~~~l~~l~~L  115 (308)
                      ..++++|++.++.+..+++...+++|++|++++|.+++ ++.  ++.+++|++|++++|.++.+|.       +..+++|
T Consensus        45 L~~L~~L~l~~~~i~~l~~l~~l~~L~~L~L~~n~i~~-l~~--~~~l~~L~~L~l~~n~i~~l~~-------l~~l~~L  114 (210)
T d1h6ta2          45 LNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTD-IKP--LANLKNLGWLFLDENKVKDLSS-------LKDLKKL  114 (210)
T ss_dssp             HHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCC-CGG--GTTCTTCCEEECCSSCCCCGGG-------GTTCTTC
T ss_pred             hcCccEEECcCCCCCCchhHhhCCCCCEEeCCCccccC-ccc--cccCcccccccccccccccccc-------ccccccc
Confidence            56789999999999888765589999999999998874 443  3689999999999999888775       7889999


Q ss_pred             cEEeecCCcCcccchhhhCcCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCcccccccCCcccchhhhhcCCCCC
Q 037941          116 VIFSFRNSHIEQLPEEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEVEGQNNASLAELNQLSRLT  195 (308)
Q Consensus       116 ~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~  195 (308)
                      ++|++++|.+..++. +..+++++.+++++|. ++..+.  +..+++|+.+++++|.+.+         +..+.++++|+
T Consensus       115 ~~L~l~~~~~~~~~~-l~~l~~l~~l~~~~n~-l~~~~~--~~~l~~L~~l~l~~n~l~~---------i~~l~~l~~L~  181 (210)
T d1h6ta2         115 KSLSLEHNGISDING-LVHLPQLESLYLGNNK-ITDITV--LSRLTKLDTLSLEDNQISD---------IVPLAGLTKLQ  181 (210)
T ss_dssp             CEEECTTSCCCCCGG-GGGCTTCCEEECCSSC-CCCCGG--GGGCTTCSEEECCSSCCCC---------CGGGTTCTTCC
T ss_pred             ccccccccccccccc-cccccccccccccccc-cccccc--ccccccccccccccccccc---------cccccCCCCCC
Confidence            999999998887765 7888999999999887 555554  6788999999999998772         23477889999


Q ss_pred             EEEeeeccCccccchhhccCCceeEee
Q 037941          196 TLEMLILDAQVMPRELFSLGLERNKIF  222 (308)
Q Consensus       196 ~L~l~~~~~~~~p~~~~~~~L~~l~i~  222 (308)
                      +|++++|.++.+|.-...++|+.|+++
T Consensus       182 ~L~Ls~N~i~~l~~l~~l~~L~~L~Ls  208 (210)
T d1h6ta2         182 NLYLSKNHISDLRALAGLKNLDVLELF  208 (210)
T ss_dssp             EEECCSSCCCBCGGGTTCTTCSEEEEE
T ss_pred             EEECCCCCCCCChhhcCCCCCCEEEcc
Confidence            999999988777642222556655543

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.72  E-value=9.9e-18  Score=133.32  Aligned_cols=145  Identities=17%  Similarity=0.230  Sum_probs=107.9

Q ss_pred             eEEeecCCCCCCCCcCCCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCCCCCCcccccccccccEEee
Q 037941           41 AISHPCRDIQELPEKLECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKKLVIFSF  120 (308)
Q Consensus        41 ~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~~~~l~~l~~L~~L~l  120 (308)
                      +..+..+.+.+......+.++++|++.++.++ .+..  ++.+++|++|++++|.++.+++       ++.+++|++|++
T Consensus        22 ~~~l~~~~~~~~~~~~~l~~l~~L~l~~~~i~-~l~~--l~~l~nL~~L~Ls~N~l~~~~~-------l~~l~~L~~L~l   91 (199)
T d2omxa2          22 KTVLGKTNVTDTVSQTDLDQVTTLQADRLGIK-SIDG--VEYLNNLTQINFSNNQLTDITP-------LKNLTKLVDILM   91 (199)
T ss_dssp             HHHTTCSSTTSEECHHHHTTCCEEECTTSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG-------GTTCTTCCEEEC
T ss_pred             HHHhCCCCCCCccCHHHhcCCCEEECCCCCCC-Cccc--cccCCCcCcCccccccccCccc-------ccCCcccccccc
Confidence            34455555555443336788889999888876 3332  3678889999999988887775       778888999999


Q ss_pred             cCCcCcccchhhhCcCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCcccccccCCcccchhhhhcCCCCCEEEee
Q 037941          121 RNSHIEQLPEEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEVEGQNNASLAELNQLSRLTTLEML  200 (308)
Q Consensus       121 ~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~  200 (308)
                      ++|.+..++. +..+++|+.|++++|. ....+.  +..+++|+.|++++|.+.         .+..+..+++|+.|++.
T Consensus        92 ~~n~~~~~~~-l~~l~~L~~L~l~~~~-~~~~~~--~~~l~~L~~L~l~~n~l~---------~~~~l~~~~~L~~L~l~  158 (199)
T d2omxa2          92 NNNQIADITP-LANLTNLTGLTLFNNQ-ITDIDP--LKNLTNLNRLELSSNTIS---------DISALSGLTSLQQLNFS  158 (199)
T ss_dssp             CSSCCCCCGG-GTTCTTCSEEECCSSC-CCCCGG--GTTCTTCSEEECCSSCCC---------CCGGGTTCTTCSEEECC
T ss_pred             cccccccccc-cccccccccccccccc-cccccc--cchhhhhHHhhhhhhhhc---------ccccccccccccccccc
Confidence            8888887775 7888889999988887 444443  678888999998888776         23457788888888888


Q ss_pred             eccCcccc
Q 037941          201 ILDAQVMP  208 (308)
Q Consensus       201 ~~~~~~~p  208 (308)
                      +|.++.++
T Consensus       159 ~n~l~~l~  166 (199)
T d2omxa2         159 SNQVTDLK  166 (199)
T ss_dssp             SSCCCCCG
T ss_pred             cccccCCc
Confidence            88766654

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.72  E-value=1.4e-16  Score=129.29  Aligned_cols=184  Identities=16%  Similarity=0.164  Sum_probs=128.4

Q ss_pred             cCCCCeeEEeecCCCCCCCCcCCCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCCCCCCccccccccc
Q 037941           35 MQKDPIAISHPCRDIQELPEKLECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKK  114 (308)
Q Consensus        35 ~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~~~~l~~l~~  114 (308)
                      ..++++.|++.+|.+++++....+++|++|++++|.+++. ..  +.++++++++++++|.++.++.       +..+++
T Consensus        39 ~l~~L~~L~l~~~~i~~l~~l~~l~~L~~L~ls~n~i~~~-~~--l~~l~~l~~l~~~~n~~~~i~~-------l~~l~~  108 (227)
T d1h6ua2          39 DLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDL-AP--LKNLTKITELELSGNPLKNVSA-------IAGLQS  108 (227)
T ss_dssp             HHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCC-GG--GTTCCSCCEEECCSCCCSCCGG-------GTTCTT
T ss_pred             HcCCcCEEECCCCCCCcchhHhcCCCCcEeecCCceeecc-cc--cccccccccccccccccccccc-------cccccc
Confidence            3578888999988888886544888999999998887743 22  4688889999988888877764       778888


Q ss_pred             ccEEeecCCcCcccchhhhCcCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCcccccccCCcccchhhhhcCCCC
Q 037941          115 LVIFSFRNSHIEQLPEEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEVEGQNNASLAELNQLSRL  194 (308)
Q Consensus       115 L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L  194 (308)
                      |++++++++....++. +...+.+..+.++++. +.....  +..+++|+.|++++|.+.+         ...++++++|
T Consensus       109 L~~l~l~~~~~~~~~~-~~~~~~~~~l~~~~~~-~~~~~~--~~~~~~L~~L~l~~n~~~~---------~~~l~~l~~L  175 (227)
T d1h6ua2         109 IKTLDLTSTQITDVTP-LAGLSNLQVLYLDLNQ-ITNISP--LAGLTNLQYLSIGNAQVSD---------LTPLANLSKL  175 (227)
T ss_dssp             CCEEECTTSCCCCCGG-GTTCTTCCEEECCSSC-CCCCGG--GGGCTTCCEEECCSSCCCC---------CGGGTTCTTC
T ss_pred             ccccccccccccccch-hccccchhhhhchhhh-hchhhh--hcccccccccccccccccc---------chhhcccccc
Confidence            8888888887776555 6677888888888776 444433  5678888888888887661         2346778888


Q ss_pred             CEEEeeeccCccccchhhccCCceeEeeccCcccc--cCCCCcCceEEE
Q 037941          195 TTLEMLILDAQVMPRELFSLGLERNKIFLGDVWSW--TGKYETSRTLKL  241 (308)
Q Consensus       195 ~~L~l~~~~~~~~p~~~~~~~L~~l~i~~~~~~~~--~~~~~~L~~L~L  241 (308)
                      ++|++++|.++.++.-...++|+.|++..+.+...  ...+++|+.|++
T Consensus       176 ~~L~Ls~n~l~~l~~l~~l~~L~~L~Ls~N~lt~i~~l~~l~~L~~L~l  224 (227)
T d1h6ua2         176 TTLKADDNKISDISPLASLPNLIEVHLKNNQISDVSPLANTSNLFIVTL  224 (227)
T ss_dssp             CEEECCSSCCCCCGGGGGCTTCCEEECTTSCCCBCGGGTTCTTCCEEEE
T ss_pred             eecccCCCccCCChhhcCCCCCCEEECcCCcCCCCcccccCCCCCEEEe
Confidence            88888888776665422225555555544443221  234444444444

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.72  E-value=1.3e-17  Score=133.78  Aligned_cols=176  Identities=18%  Similarity=0.250  Sum_probs=122.4

Q ss_pred             EeecCCCCCCCCcCCCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCCCCCCcccccccccccEEeecC
Q 037941           43 SHPCRDIQELPEKLECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKKLVIFSFRN  122 (308)
Q Consensus        43 ~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~~~~l~~l~~L~~L~l~~  122 (308)
                      .+..+.+.+......+.+++.|++.+|.++. ++.  +..+++|++|++++|.++.+++       ++.+++|++|++++
T Consensus        30 ~l~~~~~~~~~~~~~L~~L~~L~l~~~~i~~-l~~--l~~l~~L~~L~L~~n~i~~l~~-------~~~l~~L~~L~l~~   99 (210)
T d1h6ta2          30 NLKKKSVTDAVTQNELNSIDQIIANNSDIKS-VQG--IQYLPNVTKLFLNGNKLTDIKP-------LANLKNLGWLFLDE   99 (210)
T ss_dssp             HTTCSCTTSEECHHHHHTCCEEECTTSCCCC-CTT--GGGCTTCCEEECCSSCCCCCGG-------GTTCTTCCEEECCS
T ss_pred             HhCcCccCCccCHHHhcCccEEECcCCCCCC-chh--HhhCCCCCEEeCCCccccCccc-------cccCcccccccccc
Confidence            3444444333222256788899999988763 332  3678999999999999888775       77889999999999


Q ss_pred             CcCcccchhhhCcCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCcccccccCCcccchhhhhcCCCCCEEEeeec
Q 037941          123 SHIEQLPEEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEVEGQNNASLAELNQLSRLTTLEMLIL  202 (308)
Q Consensus       123 ~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~  202 (308)
                      |.++.+|. +..+++|+.|++++|. ...++.  +..+++++.+++++|.+.+         ...+..+++|+.+++++|
T Consensus       100 n~i~~l~~-l~~l~~L~~L~l~~~~-~~~~~~--l~~l~~l~~l~~~~n~l~~---------~~~~~~l~~L~~l~l~~n  166 (210)
T d1h6ta2         100 NKVKDLSS-LKDLKKLKSLSLEHNG-ISDING--LVHLPQLESLYLGNNKITD---------ITVLSRLTKLDTLSLEDN  166 (210)
T ss_dssp             SCCCCGGG-GTTCTTCCEEECTTSC-CCCCGG--GGGCTTCCEEECCSSCCCC---------CGGGGGCTTCSEEECCSS
T ss_pred             cccccccc-cccccccccccccccc-cccccc--ccccccccccccccccccc---------cccccccccccccccccc
Confidence            99888875 8888999999999887 555554  7788899999999888762         234567888999999988


Q ss_pred             cCccccchhhccCCceeEeeccCcccc--cCCCCcCceEEE
Q 037941          203 DAQVMPRELFSLGLERNKIFLGDVWSW--TGKYETSRTLKL  241 (308)
Q Consensus       203 ~~~~~p~~~~~~~L~~l~i~~~~~~~~--~~~~~~L~~L~L  241 (308)
                      .+..++.....++|+.|++..+.+.+.  ...+++|+.|+|
T Consensus       167 ~l~~i~~l~~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~L  207 (210)
T d1h6ta2         167 QISDIVPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLEL  207 (210)
T ss_dssp             CCCCCGGGTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEEE
T ss_pred             cccccccccCCCCCCEEECCCCCCCCChhhcCCCCCCEEEc
Confidence            776665422225555555544433221  334444444444

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.71  E-value=1.2e-17  Score=135.62  Aligned_cols=209  Identities=16%  Similarity=0.222  Sum_probs=138.1

Q ss_pred             CCCCeeEEeecCCCCCCCCcCCCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCCCCCCcccccccccc
Q 037941           36 QKDPIAISHPCRDIQELPEKLECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKKL  115 (308)
Q Consensus        36 ~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~~~~l~~l~~L  115 (308)
                      ..++..+++..+.+.++.....+.+|+.|.+.+|.++ .++.  +.++++|++|++++|.+..+++       +..+++|
T Consensus        18 l~~~~~~~l~~~~~~d~~~~~~l~~L~~L~l~~~~i~-~l~~--l~~l~~L~~L~ls~n~i~~~~~-------l~~l~~l   87 (227)
T d1h6ua2          18 LANAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVT-TIEG--VQYLNNLIGLELKDNQITDLAP-------LKNLTKI   87 (227)
T ss_dssp             HHHHHHHHTTCSSTTSEECHHHHHTCCEEECTTSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG-------GTTCCSC
T ss_pred             HHHHHHHHhCCCCcCCcCCHHHcCCcCEEECCCCCCC-cchh--HhcCCCCcEeecCCceeecccc-------ccccccc
Confidence            3344445555555555443336777888888887776 3432  3677888888888887776655       6677788


Q ss_pred             cEEeecCCcCcccchhhhCcCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCcccccccCCcccchhhhhcCCCCC
Q 037941          116 VIFSFRNSHIEQLPEEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEVEGQNNASLAELNQLSRLT  195 (308)
Q Consensus       116 ~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~  195 (308)
                      +++++++|.++.++. +..+++|+.++++++. ....+.  +...+.++.+.++.+.+.         ....+..+++|+
T Consensus        88 ~~l~~~~n~~~~i~~-l~~l~~L~~l~l~~~~-~~~~~~--~~~~~~~~~l~~~~~~~~---------~~~~~~~~~~L~  154 (227)
T d1h6ua2          88 TELELSGNPLKNVSA-IAGLQSIKTLDLTSTQ-ITDVTP--LAGLSNLQVLYLDLNQIT---------NISPLAGLTNLQ  154 (227)
T ss_dssp             CEEECCSCCCSCCGG-GTTCTTCCEEECTTSC-CCCCGG--GTTCTTCCEEECCSSCCC---------CCGGGGGCTTCC
T ss_pred             ccccccccccccccc-cccccccccccccccc-ccccch--hccccchhhhhchhhhhc---------hhhhhccccccc
Confidence            888888777776664 6677788888877776 333333  556677777777776655         123455667777


Q ss_pred             EEEeeeccCccccchhhccCCceeEeeccCcccccCCCCcCceEEEeecCchhhhhhHHHHhcccceeecCCccchhhhh
Q 037941          196 TLEMLILDAQVMPRELFSLGLERNKIFLGDVWSWTGKYETSRTLKLKLDNRMYLEHGIKMLLRRTEDLHLDKLNGLQNVL  275 (308)
Q Consensus       196 ~L~l~~~~~~~~p~~~~~~~L~~l~i~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  275 (308)
                      .|++++|.+...+.                    ...+++|+.|+|+.|.... ...+.. +++|++|+++++ .++++.
T Consensus       155 ~L~l~~n~~~~~~~--------------------l~~l~~L~~L~Ls~n~l~~-l~~l~~-l~~L~~L~Ls~N-~lt~i~  211 (227)
T d1h6ua2         155 YLSIGNAQVSDLTP--------------------LANLSKLTTLKADDNKISD-ISPLAS-LPNLIEVHLKNN-QISDVS  211 (227)
T ss_dssp             EEECCSSCCCCCGG--------------------GTTCTTCCEEECCSSCCCC-CGGGGG-CTTCCEEECTTS-CCCBCG
T ss_pred             cccccccccccchh--------------------hcccccceecccCCCccCC-ChhhcC-CCCCCEEECcCC-cCCCCc
Confidence            77777665433221                    3456778888888875443 333444 489999999995 677754


Q ss_pred             hccCCCCCCcccEEeccc
Q 037941          276 HELDGEGFPRLKHLLVQN  293 (308)
Q Consensus       276 ~~~~~~~~~~L~~L~l~~  293 (308)
                      +   .+.+++|+.|++++
T Consensus       212 ~---l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         212 P---LANTSNLFIVTLTN  226 (227)
T ss_dssp             G---GTTCTTCCEEEEEE
T ss_pred             c---cccCCCCCEEEeeC
Confidence            3   36789999999875

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.70  E-value=8.1e-16  Score=132.18  Aligned_cols=238  Identities=23%  Similarity=0.211  Sum_probs=153.1

Q ss_pred             CCCeeEEeecCCCCCCCCcCCCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCCCCCCccccccccccc
Q 037941           37 KDPIAISHPCRDIQELPEKLECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKKLV  116 (308)
Q Consensus        37 ~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~~~~l~~l~~L~  116 (308)
                      .++++|+++++.+..+|..  .++|++|++++|.++ .+|.    .+.+|+.|++++|.++.++.-         .+.|+
T Consensus        38 ~~l~~LdLs~~~L~~lp~~--~~~L~~L~Ls~N~l~-~lp~----~~~~L~~L~l~~n~l~~l~~l---------p~~L~  101 (353)
T d1jl5a_          38 RQAHELELNNLGLSSLPEL--PPHLESLVASCNSLT-ELPE----LPQSLKSLLVDNNNLKALSDL---------PPLLE  101 (353)
T ss_dssp             HTCSEEECTTSCCSCCCSC--CTTCSEEECCSSCCS-SCCC----CCTTCCEEECCSSCCSCCCSC---------CTTCC
T ss_pred             cCCCEEEeCCCCCCCCCCC--CCCCCEEECCCCCCc-cccc----chhhhhhhhhhhcccchhhhh---------ccccc
Confidence            4678888888888888753  568888888888877 5664    346788888888888776652         24588


Q ss_pred             EEeecCCcCcccchhhhCcCCCCEEecCCCCCCCccCcc------------------hhcCCCCCceEEccCCccccccc
Q 037941          117 IFSFRNSHIEQLPEEIGQLTRLKLLDLSTCSKLKSIRPN------------------VISNLPRLEELYMGNSFTHWEVE  178 (308)
Q Consensus       117 ~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~------------------~~~~l~~L~~L~l~~~~~~~~~~  178 (308)
                      +|++++|.++.+|. ++.+++|+.|+++++. +...+..                  .+..++.++.+.+..|.......
T Consensus       102 ~L~L~~n~l~~lp~-~~~l~~L~~L~l~~~~-~~~~~~~~~~l~~l~~~~~~~~~~~~l~~l~~l~~L~l~~n~~~~~~~  179 (353)
T d1jl5a_         102 YLGVSNNQLEKLPE-LQNSSFLKIIDVDNNS-LKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPD  179 (353)
T ss_dssp             EEECCSSCCSSCCC-CTTCTTCCEEECCSSC-CSCCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCC
T ss_pred             cccccccccccccc-hhhhccceeecccccc-ccccccccccccchhhccccccccccccccccceeccccccccccccc
Confidence            88888888888876 5778888888887775 3322221                  14456667777777765543222


Q ss_pred             C-----------CcccchhhhhcCCCCCEEEeeeccCccccchhhc------------------cCCceeEe--------
Q 037941          179 G-----------QNNASLAELNQLSRLTTLEMLILDAQVMPRELFS------------------LGLERNKI--------  221 (308)
Q Consensus       179 ~-----------~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~~~~------------------~~L~~l~i--------  221 (308)
                      .           ........+..++.|+.+.++.+....++.....                  ..+....+        
T Consensus       180 ~~~~~~~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l  259 (353)
T d1jl5a_         180 LPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGL  259 (353)
T ss_dssp             CCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCSCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSEE
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            1           0001123345677888888888765444432210                  11111111        


Q ss_pred             ------------eccCcccccCCCCcCceEEEeecCchhhhhhHHHHhcccceeecCCccchhhhhhccCCCCCCcccEE
Q 037941          222 ------------FLGDVWSWTGKYETSRTLKLKLDNRMYLEHGIKMLLRRTEDLHLDKLNGLQNVLHELDGEGFPRLKHL  289 (308)
Q Consensus       222 ------------~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L  289 (308)
                                  ..+.+......+++|+.|+|+.|.....+.    .+++|+.|++++ +.+++++     +.+++|++|
T Consensus       260 ~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~lp~----~~~~L~~L~L~~-N~L~~l~-----~~~~~L~~L  329 (353)
T d1jl5a_         260 SELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPA----LPPRLERLIASF-NHLAEVP-----ELPQNLKQL  329 (353)
T ss_dssp             SCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSCCCC----CCTTCCEEECCS-SCCSCCC-----CCCTTCCEE
T ss_pred             ccccchhcccccccCccccccccCCCCCEEECCCCccCcccc----ccCCCCEEECCC-CcCCccc-----cccCCCCEE
Confidence                        111111223346789999999987655432    258999999987 5666643     335789999


Q ss_pred             eccccccccccccC
Q 037941          290 LVQNASEILYIVSS  303 (308)
Q Consensus       290 ~l~~c~~l~~i~~~  303 (308)
                      ++++|+ ++++|+.
T Consensus       330 ~L~~N~-L~~lp~~  342 (353)
T d1jl5a_         330 HVEYNP-LREFPDI  342 (353)
T ss_dssp             ECCSSC-CSSCCCC
T ss_pred             ECcCCc-CCCCCcc
Confidence            999995 9999853

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.63  E-value=1.4e-15  Score=111.01  Aligned_cols=103  Identities=23%  Similarity=0.320  Sum_probs=50.0

Q ss_pred             cEEEccCCCCCCCCCCCCCcccccccccccEEeecCCcCcccchhhhCcCCCCEEecCCCCCCCccCcchhcCCCCCceE
Q 037941           87 QVLSLNGFHFPSLPSTLGDVATVGVLKKLVIFSFRNSHIEQLPEEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEEL  166 (308)
Q Consensus        87 ~~L~l~~~~~~~lp~~~~~~~~l~~l~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L  166 (308)
                      |+|++++|.++.++.       +..+++|++|++++|.++.+|..++.+++|+.|++++|. ++.+|.  ++.+++|++|
T Consensus         1 R~L~Ls~n~l~~l~~-------l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~-i~~l~~--~~~l~~L~~L   70 (124)
T d1dcea3           1 RVLHLAHKDLTVLCH-------LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNA-LENVDG--VANLPRLQEL   70 (124)
T ss_dssp             SEEECTTSCCSSCCC-------GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSC-CCCCGG--GTTCSSCCEE
T ss_pred             CEEEcCCCCCCCCcc-------cccCCCCCEEECCCCccCcchhhhhhhhccccccccccc-ccccCc--cccccccCeE
Confidence            345555555554442       445555555555555555555445555555555555554 444442  4455555555


Q ss_pred             EccCCcccccccCCcccchhhhhcCCCCCEEEeeeccCc
Q 037941          167 YMGNSFTHWEVEGQNNASLAELNQLSRLTTLEMLILDAQ  205 (308)
Q Consensus       167 ~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  205 (308)
                      ++++|++...+      .+..+..+++|+.|++++|.+.
T Consensus        71 ~l~~N~i~~~~------~~~~l~~~~~L~~L~l~~N~i~  103 (124)
T d1dcea3          71 LLCNNRLQQSA------AIQPLVSCPRLVLLNLQGNSLC  103 (124)
T ss_dssp             ECCSSCCCSSS------TTGGGGGCTTCCEEECTTSGGG
T ss_pred             ECCCCccCCCC------CchhhcCCCCCCEEECCCCcCC
Confidence            55555544111      1233445555555555555443

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=1.4e-15  Score=124.39  Aligned_cols=225  Identities=16%  Similarity=0.139  Sum_probs=129.7

Q ss_pred             eeEEeecCCCCCCCCcCCCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCC-CCCCCCCcccccccccccEE
Q 037941           40 IAISHPCRDIQELPEKLECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPS-LPSTLGDVATVGVLKKLVIF  118 (308)
Q Consensus        40 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-lp~~~~~~~~l~~l~~L~~L  118 (308)
                      +.++.++.++.++|+... +++++|++++|.++ .++...|.++++|++|++++|.+.. +|...     +..+++++++
T Consensus        11 ~~i~c~~~~l~~iP~~l~-~~l~~L~Ls~n~i~-~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~-----f~~l~~l~~l   83 (242)
T d1xwdc1          11 RVFLCQESKVTEIPSDLP-RNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADV-----FSNLPKLHEI   83 (242)
T ss_dssp             SEEEEESCSCSSCCSCSC-SCCSEEEEESCCCC-EECTTTTTTCTTCCEEEEESCTTCCEECSSS-----EESCTTCCEE
T ss_pred             CEEEEeCCCCCCcCCCCC-CCCCEEECcCCcCC-ccChhHhhccchhhhhhhccccccceeeccc-----cccccccccc
Confidence            456666667777776542 46788888888776 4555555678888888888877764 44443     6677777777


Q ss_pred             eecC-CcCcccc-hhhhCcCCCCEEecCCCCCCCccCc-chhcCCCCCceEEccCCcccccccCCcccchhhhhcCC-CC
Q 037941          119 SFRN-SHIEQLP-EEIGQLTRLKLLDLSTCSKLKSIRP-NVISNLPRLEELYMGNSFTHWEVEGQNNASLAELNQLS-RL  194 (308)
Q Consensus       119 ~l~~-~~i~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~-~L  194 (308)
                      .+.. +.+..++ ..+..+++|+.+++++|. +...+. ..+..+..+..+...++.+.....       ..+..++ .+
T Consensus        84 ~~~~~n~l~~~~~~~~~~l~~L~~l~l~~~~-l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~-------~~~~~~~~~l  155 (242)
T d1xwdc1          84 RIEKANNLLYINPEAFQNLPNLQYLLISNTG-IKHLPDVHKIHSLQKVLLDIQDNINIHTIER-------NSFVGLSFES  155 (242)
T ss_dssp             EEECCTTCCEECTTSEECCTTCCEEEEESCC-CCSCCCCTTTCBSSCEEEEEESCTTCCEECT-------TSSTTSBSSC
T ss_pred             cccccccccccccccccccccccccccchhh-hcccccccccccccccccccccccccccccc-------cccccccccc
Confidence            7654 4455333 446777788888887776 444443 112233344444444444442111       2233332 56


Q ss_pred             CEEEeeeccCccccchhhc-cCCceeEeeccCcccccCCCCcCceEEEeecCchhhhhhHHHHhcccceeecCCccchhh
Q 037941          195 TTLEMLILDAQVMPRELFS-LGLERNKIFLGDVWSWTGKYETSRTLKLKLDNRMYLEHGIKMLLRRTEDLHLDKLNGLQN  273 (308)
Q Consensus       195 ~~L~l~~~~~~~~p~~~~~-~~L~~l~i~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  273 (308)
                      +.+++.+|.++.++...+. .+++.+.                   .+..|...........-+++|++|++++ +.++.
T Consensus       156 ~~L~l~~n~l~~i~~~~~~~~~l~~~~-------------------~l~~n~l~~l~~~~f~~l~~L~~L~Ls~-N~l~~  215 (242)
T d1xwdc1         156 VILWLNKNGIQEIHNCAFNGTQLDELN-------------------LSDNNNLEELPNDVFHGASGPVILDISR-TRIHS  215 (242)
T ss_dssp             EEEECCSSCCCEECTTTTTTCCEEEEE-------------------CTTCTTCCCCCTTTTTTSCCCSEEECTT-SCCCC
T ss_pred             eeeecccccccccccccccchhhhccc-------------------cccccccccccHHHhcCCCCCCEEECCC-CcCCc
Confidence            6677766666655554332 2222221                   1222222222232222248899999988 55665


Q ss_pred             hhhccCCCCCCcccEEeccccccccccccC
Q 037941          274 VLHELDGEGFPRLKHLLVQNASEILYIVSS  303 (308)
Q Consensus       274 ~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~  303 (308)
                      +    +..+|.+|..|..-++.+++.+|..
T Consensus       216 l----~~~~~~~l~~L~~l~~~~l~~lp~~  241 (242)
T d1xwdc1         216 L----PSYGLENLKKLRARSTYNLKKLPTL  241 (242)
T ss_dssp             C----CSSSCTTCCEEESSSEESSSCSCCC
T ss_pred             c----CHHHHcCCcccccCcCCCCCcCCCC
Confidence            3    3345677777777777778888764

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.62  E-value=1.8e-15  Score=119.38  Aligned_cols=128  Identities=16%  Similarity=0.278  Sum_probs=102.4

Q ss_pred             eeEEeecCCCCCCCCcCCCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCCCCCCcccccccccccEEe
Q 037941           40 IAISHPCRDIQELPEKLECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKKLVIFS  119 (308)
Q Consensus        40 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~~~~l~~l~~L~~L~  119 (308)
                      ++++.+++.+..+|+.+. +++++|++++|.++..++...|.++++|+.|++++|.+..++...     +..+++|++|+
T Consensus        11 ~~v~Cs~~~L~~iP~~lp-~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~-----~~~~~~L~~L~   84 (192)
T d1w8aa_          11 TTVDCTGRGLKEIPRDIP-LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNA-----FEGASHIQELQ   84 (192)
T ss_dssp             TEEECTTSCCSSCCSCCC-TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTT-----TTTCTTCCEEE
T ss_pred             CEEEEeCCCcCccCCCCC-CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccc-----cccccccceee
Confidence            357777778888887653 678888888888876666666678888999999888888776654     78888888999


Q ss_pred             ecCCcCcccch-hhhCcCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCccc
Q 037941          120 FRNSHIEQLPE-EIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTH  174 (308)
Q Consensus       120 l~~~~i~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~  174 (308)
                      +++|+++.+|. .+.++++|+.|++++|. ++.++.+.+..+++|+++++++|.+.
T Consensus        85 Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~-l~~i~~~~f~~l~~L~~l~L~~N~~~  139 (192)
T d1w8aa_          85 LGENKIKEISNKMFLGLHQLKTLNLYDNQ-ISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             CCSCCCCEECSSSSTTCTTCCEEECCSSC-CCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             eccccccccCHHHHhCCCcccccccCCcc-ccccCHHHhcCCcccccccccccccc
Confidence            98888887764 47788888888888888 77787777788888888888888766

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.59  E-value=8.5e-15  Score=106.75  Aligned_cols=121  Identities=19%  Similarity=0.270  Sum_probs=85.8

Q ss_pred             cEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCCCCCCcccccccccccEEeecCCcCcccchhhhCcCCCCEE
Q 037941           62 KLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKKLVIFSFRNSHIEQLPEEIGQLTRLKLL  141 (308)
Q Consensus        62 ~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~~~~l~~l~~L~~L~l~~~~i~~l~~~~~~l~~L~~L  141 (308)
                      |+|++++|.++ .++.  +.++++|++|++++|.++++|+.      ++.+++|++|++++|.++.+|. +..+++|++|
T Consensus         1 R~L~Ls~n~l~-~l~~--l~~l~~L~~L~ls~N~l~~lp~~------~~~l~~L~~L~l~~N~i~~l~~-~~~l~~L~~L   70 (124)
T d1dcea3           1 RVLHLAHKDLT-VLCH--LEQLLLVTHLDLSHNRLRALPPA------LAALRCLEVLQASDNALENVDG-VANLPRLQEL   70 (124)
T ss_dssp             SEEECTTSCCS-SCCC--GGGGTTCCEEECCSSCCCCCCGG------GGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEE
T ss_pred             CEEEcCCCCCC-CCcc--cccCCCCCEEECCCCccCcchhh------hhhhhcccccccccccccccCc-cccccccCeE
Confidence            56777777776 4443  36788888888888888888876      7788888888888888887775 7888888888


Q ss_pred             ecCCCCCCCccCc-chhcCCCCCceEEccCCcccccccCCcccchhhhhcCCCCCEE
Q 037941          142 DLSTCSKLKSIRP-NVISNLPRLEELYMGNSFTHWEVEGQNNASLAELNQLSRLTTL  197 (308)
Q Consensus       142 ~l~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L  197 (308)
                      ++++|. ++.++. ..++.+++|+.|++++|.+.....    ........+|+|+.+
T Consensus        71 ~l~~N~-i~~~~~~~~l~~~~~L~~L~l~~N~i~~~~~----~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          71 LLCNNR-LQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG----IQERLAEMLPSVSSI  122 (124)
T ss_dssp             ECCSSC-CCSSSTTGGGGGCTTCCEEECTTSGGGGSSS----CTTHHHHHCTTCSEE
T ss_pred             ECCCCc-cCCCCCchhhcCCCCCCEEECCCCcCCcCcc----HHHHHHHHCcCcceE
Confidence            888887 665553 336778888888888888763211    011233456666654

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=1.9e-15  Score=115.62  Aligned_cols=108  Identities=19%  Similarity=0.191  Sum_probs=53.0

Q ss_pred             CCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCCCCCCcccccccccccEEeecCCcCcccchh-hhCc
Q 037941           57 ECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKKLVIFSFRNSHIEQLPEE-IGQL  135 (308)
Q Consensus        57 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~~~~l~~l~~L~~L~l~~~~i~~l~~~-~~~l  135 (308)
                      ++.++++|++++|.++ .++.. +..+++|++|++++|.+..++.       +..+++|++|++++|.++.++.. +..+
T Consensus        16 n~~~lr~L~L~~n~I~-~i~~~-~~~l~~L~~L~Ls~N~i~~l~~-------~~~l~~L~~L~ls~N~i~~l~~~~~~~l   86 (162)
T d1a9na_          16 NAVRDRELDLRGYKIP-VIENL-GATLDQFDAIDFSDNEIRKLDG-------FPLLRRLKTLLVNNNRICRIGEGLDQAL   86 (162)
T ss_dssp             CTTSCEEEECTTSCCC-SCCCG-GGGTTCCSEEECCSSCCCEECC-------CCCCSSCCEEECCSSCCCEECSCHHHHC
T ss_pred             CcCcCcEEECCCCCCC-ccCcc-ccccccCCEEECCCCCCCccCC-------cccCcchhhhhcccccccCCCccccccc
Confidence            4444555555555544 22322 2345555555555555554432       44555555555555555544433 2345


Q ss_pred             CCCCEEecCCCCCCCccCc-chhcCCCCCceEEccCCccc
Q 037941          136 TRLKLLDLSTCSKLKSIRP-NVISNLPRLEELYMGNSFTH  174 (308)
Q Consensus       136 ~~L~~L~l~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~  174 (308)
                      ++|+.|++++|. ++.++. ..+..+++|++|++++|.+.
T Consensus        87 ~~L~~L~L~~N~-i~~~~~l~~l~~l~~L~~L~l~~N~i~  125 (162)
T d1a9na_          87 PDLTELILTNNS-LVELGDLDPLASLKSLTYLCILRNPVT  125 (162)
T ss_dssp             TTCCEEECCSCC-CCCGGGGGGGGGCTTCCEEECCSSGGG
T ss_pred             cccccceecccc-ccccccccccccccccchhhcCCCccc
Confidence            555555555555 443332 22445555555555555544

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=6.7e-15  Score=112.54  Aligned_cols=115  Identities=23%  Similarity=0.252  Sum_probs=99.9

Q ss_pred             cCCCCccEEEccCCCCCCCCCCCCCcccccccccccEEeecCCcCcccchhhhCcCCCCEEecCCCCCCCccCcchhcCC
Q 037941           81 EGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKKLVIFSFRNSHIEQLPEEIGQLTRLKLLDLSTCSKLKSIRPNVISNL  160 (308)
Q Consensus        81 ~~l~~L~~L~l~~~~~~~lp~~~~~~~~l~~l~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l  160 (308)
                      ....+++.|++++|.++.+|..      +..+++|++|++++|.+++++. +..+++|+.|++++|. ++.++.+.+..+
T Consensus        15 ~n~~~lr~L~L~~n~I~~i~~~------~~~l~~L~~L~Ls~N~i~~l~~-~~~l~~L~~L~ls~N~-i~~l~~~~~~~l   86 (162)
T d1a9na_          15 TNAVRDRELDLRGYKIPVIENL------GATLDQFDAIDFSDNEIRKLDG-FPLLRRLKTLLVNNNR-ICRIGEGLDQAL   86 (162)
T ss_dssp             ECTTSCEEEECTTSCCCSCCCG------GGGTTCCSEEECCSSCCCEECC-CCCCSSCCEEECCSSC-CCEECSCHHHHC
T ss_pred             cCcCcCcEEECCCCCCCccCcc------ccccccCCEEECCCCCCCccCC-cccCcchhhhhccccc-ccCCCccccccc
Confidence            5778899999999999999865      6789999999999999998865 8899999999999999 888888767789


Q ss_pred             CCCceEEccCCcccccccCCcccchhhhhcCCCCCEEEeeeccCccccc
Q 037941          161 PRLEELYMGNSFTHWEVEGQNNASLAELNQLSRLTTLEMLILDAQVMPR  209 (308)
Q Consensus       161 ~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~  209 (308)
                      ++|++|++++|.+....      .+..++.+++|++|++++|.++..|.
T Consensus        87 ~~L~~L~L~~N~i~~~~------~l~~l~~l~~L~~L~l~~N~i~~~~~  129 (162)
T d1a9na_          87 PDLTELILTNNSLVELG------DLDPLASLKSLTYLCILRNPVTNKKH  129 (162)
T ss_dssp             TTCCEEECCSCCCCCGG------GGGGGGGCTTCCEEECCSSGGGGSTT
T ss_pred             cccccceeccccccccc------cccccccccccchhhcCCCccccccc
Confidence            99999999999988321      23567899999999999998877764

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=2.1e-14  Score=117.20  Aligned_cols=177  Identities=14%  Similarity=0.154  Sum_probs=129.3

Q ss_pred             eeecccchhhHhhhhcCCCCeeEEeecCCCCCCCCcC--CCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccC-CCC
Q 037941           20 NIQIISDLREVFEDLMQKDPIAISHPCRDIQELPEKL--ECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNG-FHF   96 (308)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~   96 (308)
                      ..+.+.++.++|. ..++++++|++++|.+..+|...  ++++|++|++++|.+...++...|.+++.++++.+.. +.+
T Consensus        13 i~c~~~~l~~iP~-~l~~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l   91 (242)
T d1xwdc1          13 FLCQESKVTEIPS-DLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNL   91 (242)
T ss_dssp             EEEESCSCSSCCS-CSCSCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTC
T ss_pred             EEEeCCCCCCcCC-CCCCCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccccccc
Confidence            3455677888884 45679999999999999888753  8999999999999987767776678999999998764 567


Q ss_pred             CCCCCCCCCcccccccccccEEeecCCcCcccch--hhhCcCCCCEEecCCCCCCCccCcchhcCCC-CCceEEccCCcc
Q 037941           97 PSLPSTLGDVATVGVLKKLVIFSFRNSHIEQLPE--EIGQLTRLKLLDLSTCSKLKSIRPNVISNLP-RLEELYMGNSFT  173 (308)
Q Consensus        97 ~~lp~~~~~~~~l~~l~~L~~L~l~~~~i~~l~~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~  173 (308)
                      ..+++..     +..+++|++++++++.+...+.  ....+..+..+...++. +..++...+..++ .++.+++.+|.+
T Consensus        92 ~~~~~~~-----~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~-l~~i~~~~~~~~~~~l~~L~l~~n~l  165 (242)
T d1xwdc1          92 LYINPEA-----FQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNIN-IHTIERNSFVGLSFESVILWLNKNGI  165 (242)
T ss_dssp             CEECTTS-----EECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTT-CCEECTTSSTTSBSSCEEEECCSSCC
T ss_pred             ccccccc-----ccccccccccccchhhhcccccccccccccccccccccccc-cccccccccccccccceeeecccccc
Confidence            7666554     8999999999999999886654  23445555555666655 6777665556554 788999999988


Q ss_pred             cccccCCcccchhhhhcCCCCCEEE-eeeccCccccchh
Q 037941          174 HWEVEGQNNASLAELNQLSRLTTLE-MLILDAQVMPREL  211 (308)
Q Consensus       174 ~~~~~~~~~~~~~~l~~l~~L~~L~-l~~~~~~~~p~~~  211 (308)
                      ....        .......+++++. +.+|.++++|.+.
T Consensus       166 ~~i~--------~~~~~~~~l~~~~~l~~n~l~~l~~~~  196 (242)
T d1xwdc1         166 QEIH--------NCAFNGTQLDELNLSDNNNLEELPNDV  196 (242)
T ss_dssp             CEEC--------TTTTTTCCEEEEECTTCTTCCCCCTTT
T ss_pred             cccc--------cccccchhhhccccccccccccccHHH
Confidence            7322        2233445555554 4556677776653

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.55  E-value=6.1e-15  Score=116.20  Aligned_cols=130  Identities=17%  Similarity=0.175  Sum_probs=107.7

Q ss_pred             ccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCC-CCCCCCCcccccccccccEEeecCCcCcccc-hhhhCcCCC
Q 037941           61 LKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPS-LPSTLGDVATVGVLKKLVIFSFRNSHIEQLP-EEIGQLTRL  138 (308)
Q Consensus        61 L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-lp~~~~~~~~l~~l~~L~~L~l~~~~i~~l~-~~~~~l~~L  138 (308)
                      .++++.+++.++ .+|..+.   ..+++|++++|.++. ++...     +..+++|++|++++|.+..++ ..+..+++|
T Consensus        10 ~~~v~Cs~~~L~-~iP~~lp---~~l~~L~Ls~N~i~~~~~~~~-----f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L   80 (192)
T d1w8aa_          10 GTTVDCTGRGLK-EIPRDIP---LHTTELLLNDNELGRISSDGL-----FGRLPHLVKLELKRNQLTGIEPNAFEGASHI   80 (192)
T ss_dssp             TTEEECTTSCCS-SCCSCCC---TTCSEEECCSCCCCSBCCSCS-----GGGCTTCCEEECCSSCCCCBCTTTTTTCTTC
T ss_pred             CCEEEEeCCCcC-ccCCCCC---CCCCEEEeCCCCCcccccccc-----cCCCceEeeeecccccccccccccccccccc
Confidence            467888888887 6776542   679999999999974 65554     889999999999999998555 668889999


Q ss_pred             CEEecCCCCCCCccCcchhcCCCCCceEEccCCcccccccCCcccchhhhhcCCCCCEEEeeeccCccc
Q 037941          139 KLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEVEGQNNASLAELNQLSRLTTLEMLILDAQVM  207 (308)
Q Consensus       139 ~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~  207 (308)
                      +.|++++|. ++.++.+.|..+++|++|++++|.++..++       ..|..+++|+++++++|.+...
T Consensus        81 ~~L~Ls~N~-l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~-------~~f~~l~~L~~l~L~~N~~~~~  141 (192)
T d1w8aa_          81 QELQLGENK-IKEISNKMFLGLHQLKTLNLYDNQISCVMP-------GSFEHLNSLTSLNLASNPFNCN  141 (192)
T ss_dssp             CEEECCSCC-CCEECSSSSTTCTTCCEEECCSSCCCEECT-------TSSTTCTTCCEEECTTCCBCCS
T ss_pred             ceeeecccc-ccccCHHHHhCCCcccccccCCccccccCH-------HHhcCCcccccccccccccccc
Confidence            999999998 888888878999999999999999985443       4678899999999999876443

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.53  E-value=1.6e-13  Score=117.59  Aligned_cols=217  Identities=18%  Similarity=0.103  Sum_probs=141.2

Q ss_pred             CCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCCCCCCcccccccccccEEeecCCcCcccchhhhCcCCC
Q 037941           59 PKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKKLVIFSFRNSHIEQLPEEIGQLTRL  138 (308)
Q Consensus        59 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~~~~l~~l~~L~~L~l~~~~i~~l~~~~~~l~~L  138 (308)
                      .+++.|+++++.++ .+|+    ..++|++|++++|.++++|..      +   .+|+.|++.+|.++.++. +  .+.|
T Consensus        38 ~~l~~LdLs~~~L~-~lp~----~~~~L~~L~Ls~N~l~~lp~~------~---~~L~~L~l~~n~l~~l~~-l--p~~L  100 (353)
T d1jl5a_          38 RQAHELELNNLGLS-SLPE----LPPHLESLVASCNSLTELPEL------P---QSLKSLLVDNNNLKALSD-L--PPLL  100 (353)
T ss_dssp             HTCSEEECTTSCCS-CCCS----CCTTCSEEECCSSCCSSCCCC------C---TTCCEEECCSSCCSCCCS-C--CTTC
T ss_pred             cCCCEEEeCCCCCC-CCCC----CCCCCCEEECCCCCCcccccc------h---hhhhhhhhhhcccchhhh-h--cccc
Confidence            46889999999987 6775    357899999999999999986      3   578999999999887764 1  2469


Q ss_pred             CEEecCCCCCCCccCcchhcCCCCCceEEccCCcccccccC-----------CcccchhhhhcCCCCCEEEeeeccCccc
Q 037941          139 KLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEVEG-----------QNNASLAELNQLSRLTTLEMLILDAQVM  207 (308)
Q Consensus       139 ~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-----------~~~~~~~~l~~l~~L~~L~l~~~~~~~~  207 (308)
                      ++|++++|. +..+|.  ++.+++|++++++++.+...+..           ........+..++.++.+.+..+....+
T Consensus       101 ~~L~L~~n~-l~~lp~--~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~l~~l~~L~l~~n~~~~~  177 (353)
T d1jl5a_         101 EYLGVSNNQ-LEKLPE--LQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKL  177 (353)
T ss_dssp             CEEECCSSC-CSSCCC--CTTCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSC
T ss_pred             ccccccccc-cccccc--hhhhccceeeccccccccccccccccccchhhccccccccccccccccceeccccccccccc
Confidence            999999998 888886  67899999999999877644332           0001123455677788888877764333


Q ss_pred             cc--------------------hhhccCCceeEeeccCcccccCCCCc--------------------CceEEEeecCch
Q 037941          208 PR--------------------ELFSLGLERNKIFLGDVWSWTGKYET--------------------SRTLKLKLDNRM  247 (308)
Q Consensus       208 p~--------------------~~~~~~L~~l~i~~~~~~~~~~~~~~--------------------L~~L~L~~~~~~  247 (308)
                      +.                    ....+.++.+.+..+..........+                    +...++..+...
T Consensus       178 ~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  257 (353)
T d1jl5a_         178 PDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFS  257 (353)
T ss_dssp             CCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCSCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCS
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            22                    11224556665543332222222222                    222222211100


Q ss_pred             hh----------------hhhHHHHhcccceeecCCccchhhhhhccCCCCCCcccEEecccccccccccc
Q 037941          248 YL----------------EHGIKMLLRRTEDLHLDKLNGLQNVLHELDGEGFPRLKHLLVQNASEILYIVS  302 (308)
Q Consensus       248 ~~----------------~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~  302 (308)
                      ..                ..++...+++|++|++++ +.++.++     ..+++|+.|++++| +++++|.
T Consensus       258 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~-N~l~~lp-----~~~~~L~~L~L~~N-~L~~l~~  321 (353)
T d1jl5a_         258 GLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSN-NKLIELP-----ALPPRLERLIASFN-HLAEVPE  321 (353)
T ss_dssp             EESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCS-SCCSCCC-----CCCTTCCEEECCSS-CCSCCCC
T ss_pred             ccccccchhcccccccCccccccccCCCCCEEECCC-CccCccc-----cccCCCCEEECCCC-cCCcccc
Confidence            00                011122357899999998 4555532     45789999999888 7888874

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=8.4e-15  Score=122.61  Aligned_cols=136  Identities=16%  Similarity=0.189  Sum_probs=87.3

Q ss_pred             CCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCC-CCCCCCCCcccccccccccEEeecCC-cCc--ccchhh
Q 037941           57 ECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFP-SLPSTLGDVATVGVLKKLVIFSFRNS-HIE--QLPEEI  132 (308)
Q Consensus        57 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~lp~~~~~~~~l~~l~~L~~L~l~~~-~i~--~l~~~~  132 (308)
                      ...+|++|+++++.++......++.++++|++|++++|.+. ..+..      +..+++|++|++++| .++  .+....
T Consensus        44 ~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~------l~~~~~L~~L~Ls~c~~itd~~l~~l~  117 (284)
T d2astb2          44 SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNT------LAKNSNLVRLNLSGCSGFSEFALQTLL  117 (284)
T ss_dssp             CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHH------HTTCTTCSEEECTTCBSCCHHHHHHHH
T ss_pred             cCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHH------HhcCCCCcCccccccccccccccchhh
Confidence            66688888888887765444555678888888888888766 33344      667788888888885 465  334445


Q ss_pred             hCcCCCCEEecCCCCCCCcc--CcchhcCCCCCceEEccCCcccccccCCcccchh-hhhcCCCCCEEEeeecc
Q 037941          133 GQLTRLKLLDLSTCSKLKSI--RPNVISNLPRLEELYMGNSFTHWEVEGQNNASLA-ELNQLSRLTTLEMLILD  203 (308)
Q Consensus       133 ~~l~~L~~L~l~~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~  203 (308)
                      ..+++|+.|++++|..++..  ........++|+.|+++++...     .....+. -...+++|++|+++++.
T Consensus       118 ~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-----i~~~~l~~l~~~~~~L~~L~L~~~~  186 (284)
T d2astb2         118 SSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKN-----LQKSDLSTLVRRCPNLVHLDLSDSV  186 (284)
T ss_dssp             HHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGG-----SCHHHHHHHHHHCTTCSEEECTTCT
T ss_pred             HHHHhccccccccccccccccchhhhcccccccchhhhcccccc-----ccccccccccccccccccccccccc
Confidence            66788888888887644321  1111223467888888765311     0011222 33567888888887763

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=2.9e-14  Score=119.26  Aligned_cols=174  Identities=14%  Similarity=0.115  Sum_probs=85.9

Q ss_pred             CCCCccEEEccCCCCC--CCCCCCCCcccccccccccEEeecCCcCc-ccchhhhCcCCCCEEecCCCCCCCccCc-chh
Q 037941           82 GVPSLQVLSLNGFHFP--SLPSTLGDVATVGVLKKLVIFSFRNSHIE-QLPEEIGQLTRLKLLDLSTCSKLKSIRP-NVI  157 (308)
Q Consensus        82 ~l~~L~~L~l~~~~~~--~lp~~~~~~~~l~~l~~L~~L~l~~~~i~-~l~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~  157 (308)
                      ...+|++|+++++.+.  .++..      +..+++|++|++++|.++ ..+..+..+++|+.|++++|..++.... .+.
T Consensus        44 ~~~~L~~LdLs~~~i~~~~l~~l------~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~  117 (284)
T d2astb2          44 SPFRVQHMDLSNSVIEVSTLHGI------LSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLL  117 (284)
T ss_dssp             CCBCCCEEECTTCEECHHHHHHH------HTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHH
T ss_pred             cCCCCCEEECCCCccCHHHHHHH------HHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhh
Confidence            3456777777766654  12222      555677777777777665 4445566667777777777654442211 113


Q ss_pred             cCCCCCceEEccCCc-ccccccCCcccchhhhhc-CCCCCEEEeeecc--Ccc--ccchhhc-cCCceeEeeccC-c---
Q 037941          158 SNLPRLEELYMGNSF-THWEVEGQNNASLAELNQ-LSRLTTLEMLILD--AQV--MPRELFS-LGLERNKIFLGD-V---  226 (308)
Q Consensus       158 ~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~~l~~-l~~L~~L~l~~~~--~~~--~p~~~~~-~~L~~l~i~~~~-~---  226 (308)
                      ..+++|++|++++|. +.+      ......+.. .++|+.|+++++.  ++.  +...... ++|+.|++..+. +   
T Consensus       118 ~~~~~L~~L~ls~c~~~~~------~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~  191 (284)
T d2astb2         118 SSCSRLDELNLSWCFDFTE------KHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKND  191 (284)
T ss_dssp             HHCTTCCEEECCCCTTCCH------HHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGG
T ss_pred             HHHHhcccccccccccccc------ccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCch
Confidence            456677777776653 220      011122222 3567777776542  111  1111111 556666554322 1   


Q ss_pred             -ccccCCCCcCceEEEeecCchhh--hhhHHHHhcccceeecCCc
Q 037941          227 -WSWTGKYETSRTLKLKLDNRMYL--EHGIKMLLRRTEDLHLDKL  268 (308)
Q Consensus       227 -~~~~~~~~~L~~L~L~~~~~~~~--~~~~~~~~~~L~~L~l~~~  268 (308)
                       ......+++|++|+|+.|..++.  ...+.. +|+|+.|++.+|
T Consensus       192 ~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~-~~~L~~L~l~~~  235 (284)
T d2astb2         192 CFQEFFQLNYLQHLSLSRCYDIIPETLLELGE-IPTLKTLQVFGI  235 (284)
T ss_dssp             GGGGGGGCTTCCEEECTTCTTCCGGGGGGGGG-CTTCCEEECTTS
T ss_pred             hhhhhcccCcCCEEECCCCCCCChHHHHHHhc-CCCCCEEeeeCC
Confidence             11234455666666655433321  111222 255666666554

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.34  E-value=1.8e-14  Score=113.92  Aligned_cols=127  Identities=18%  Similarity=0.252  Sum_probs=73.1

Q ss_pred             CCCeeEEeecC--CCCCCCCcC-CCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCCCCCCcccccccc
Q 037941           37 KDPIAISHPCR--DIQELPEKL-ECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLK  113 (308)
Q Consensus        37 ~~l~~L~l~~~--~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~~~~l~~l~  113 (308)
                      ...+.+++...  .+..++... .+++|++|++++|.++ .++.  +.++++|++|++++|.+..+|..      ...++
T Consensus        23 ~~~~~~~l~~~~~~i~~l~~sl~~L~~L~~L~Ls~n~I~-~i~~--l~~l~~L~~L~Ls~N~i~~i~~~------~~~~~   93 (198)
T d1m9la_          23 TEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIE-KISS--LSGMENLRILSLGRNLIKKIENL------DAVAD   93 (198)
T ss_dssp             TTCSCEECCBCCTTCCCCHHHHHHTTTCCEEECSEEEES-CCCC--HHHHTTCCEEECCEEEECSCSSH------HHHHH
T ss_pred             cccceeeeecccCchhhhhhHHhcccccceeECcccCCC-Cccc--ccCCccccChhhccccccccccc------ccccc
Confidence            34455555543  234444444 5666666666666665 3332  34566666666666666666553      34445


Q ss_pred             cccEEeecCCcCcccchhhhCcCCCCEEecCCCCCCCccCc-chhcCCCCCceEEccCCccc
Q 037941          114 KLVIFSFRNSHIEQLPEEIGQLTRLKLLDLSTCSKLKSIRP-NVISNLPRLEELYMGNSFTH  174 (308)
Q Consensus       114 ~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~  174 (308)
                      +|++|++++|.++.++. +..+++|+.|++++|. ++.++. ..+..+++|+.|++++|.+.
T Consensus        94 ~L~~L~l~~N~i~~l~~-~~~l~~L~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~L~~N~l~  153 (198)
T d1m9la_          94 TLEELWISYNQIASLSG-IEKLVNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGNPLY  153 (198)
T ss_dssp             HCCEEECSEEECCCHHH-HHHHHHSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECSSHHH
T ss_pred             ccccccccccccccccc-ccccccccccccccch-hccccccccccCCCccceeecCCCccc
Confidence            66666666666665543 5566666666666665 444432 22556666666666666554

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.32  E-value=4e-14  Score=111.84  Aligned_cols=131  Identities=18%  Similarity=0.118  Sum_probs=102.0

Q ss_pred             CccEEEecCCCC-cCCCCchhhcCCCCccEEEccCCCCCCCCCCCCCcccccccccccEEeecCCcCcccchhhhCcCCC
Q 037941           60 KLKLFFLFSEKL-SLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKKLVIFSFRNSHIEQLPEEIGQLTRL  138 (308)
Q Consensus        60 ~L~~L~l~~~~~-~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~~~~l~~l~~L~~L~l~~~~i~~l~~~~~~l~~L  138 (308)
                      .++.+.+.+..- ...++..+ ..+++|++|++++|.++.++.       +..+++|++|++++|.++.+|.....+++|
T Consensus        24 ~~~~~~l~~~~~~i~~l~~sl-~~L~~L~~L~Ls~n~I~~i~~-------l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L   95 (198)
T d1m9la_          24 EAEKVELHGMIPPIEKMDATL-STLKACKHLALSTNNIEKISS-------LSGMENLRILSLGRNLIKKIENLDAVADTL   95 (198)
T ss_dssp             TCSCEECCBCCTTCCCCHHHH-HHTTTCCEEECSEEEESCCCC-------HHHHTTCCEEECCEEEECSCSSHHHHHHHC
T ss_pred             ccceeeeecccCchhhhhhHH-hcccccceeECcccCCCCccc-------ccCCccccChhhcccccccccccccccccc
Confidence            344455544321 11333444 789999999999999998874       899999999999999999998766677889


Q ss_pred             CEEecCCCCCCCccCcchhcCCCCCceEEccCCcccccccCCcccchhhhhcCCCCCEEEeeeccCccc
Q 037941          139 KLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEVEGQNNASLAELNQLSRLTTLEMLILDAQVM  207 (308)
Q Consensus       139 ~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~  207 (308)
                      +.|++++|. ++.++.  +..+++|+.|++++|.+....      .+..+..+++|+.|++++|.+...
T Consensus        96 ~~L~l~~N~-i~~l~~--~~~l~~L~~L~L~~N~i~~~~------~~~~l~~l~~L~~L~L~~N~l~~~  155 (198)
T d1m9la_          96 EELWISYNQ-IASLSG--IEKLVNLRVLYMSNNKITNWG------EIDKLAALDKLEDLLLAGNPLYND  155 (198)
T ss_dssp             CEEECSEEE-CCCHHH--HHHHHHSSEEEESEEECCCHH------HHHHHTTTTTCSEEEECSSHHHHH
T ss_pred             ccccccccc-cccccc--ccccccccccccccchhcccc------ccccccCCCccceeecCCCccccC
Confidence            999999998 777754  788999999999999987221      135688999999999999975443

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=3.8e-11  Score=90.60  Aligned_cols=101  Identities=14%  Similarity=0.098  Sum_probs=54.4

Q ss_pred             eEEeecCCCCCCCCcC-CCCCccEEEecCCC-CcCCCCchhhcCCCCccEEEccCCCCCCCCCCCCCcccccccccccEE
Q 037941           41 AISHPCRDIQELPEKL-ECPKLKLFFLFSEK-LSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKKLVIF  118 (308)
Q Consensus        41 ~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~-~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~~~~l~~l~~L~~L  118 (308)
                      .++..++...++|..+ .++++++|++.++. ++ .++...|.++++|+.|++++|.+..+++..     +..+++|++|
T Consensus        12 ~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~-~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~-----f~~l~~L~~L   85 (156)
T d2ifga3          12 GLRCTRDGALDSLHHLPGAENLTELYIENQQHLQ-HLELRDLRGLGELRNLTIVKSGLRFVAPDA-----FHFTPRLSRL   85 (156)
T ss_dssp             CEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCC-EECGGGSCSCCCCSEEECCSSCCCEECTTG-----GGSCSCCCEE
T ss_pred             eEEecCCCCccCcccccCccccCeeecCCCcccc-ccCchhhccccccCcceeeccccCCccccc-----ccccccccce
Confidence            3555555555555544 55666666665543 33 344444455666666666666665554443     5555556666


Q ss_pred             eecCCcCcccchhhhCcCCCCEEecCCCC
Q 037941          119 SFRNSHIEQLPEEIGQLTRLKLLDLSTCS  147 (308)
Q Consensus       119 ~l~~~~i~~l~~~~~~l~~L~~L~l~~~~  147 (308)
                      ++++|+++.+|..+....+|+.|++++|.
T Consensus        86 ~Ls~N~l~~l~~~~~~~~~l~~L~L~~Np  114 (156)
T d2ifga3          86 NLSFNALESLSWKTVQGLSLQELVLSGNP  114 (156)
T ss_dssp             ECCSSCCSCCCSTTTCSCCCCEEECCSSC
T ss_pred             eccCCCCcccChhhhccccccccccCCCc
Confidence            66665555555444444455555555554

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=1.1e-10  Score=88.09  Aligned_cols=109  Identities=17%  Similarity=0.112  Sum_probs=75.8

Q ss_pred             CCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCC-CCCCCCCCCCCcccccccccccEEeecCCcCcccc-hhhhC
Q 037941           57 ECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGF-HFPSLPSTLGDVATVGVLKKLVIFSFRNSHIEQLP-EEIGQ  134 (308)
Q Consensus        57 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~-~~~~lp~~~~~~~~l~~l~~L~~L~l~~~~i~~l~-~~~~~  134 (308)
                      .+.....+...++..+ ..|..+ .++++|+.|+++++ .++.++...     |..+++|++|++++|+++.++ ..+..
T Consensus         6 ~c~~~~~l~c~~~~~~-~~p~~l-~~l~~l~~L~l~~n~~l~~i~~~~-----f~~l~~L~~L~Ls~N~l~~i~~~~f~~   78 (156)
T d2ifga3           6 CPHGSSGLRCTRDGAL-DSLHHL-PGAENLTELYIENQQHLQHLELRD-----LRGLGELRNLTIVKSGLRFVAPDAFHF   78 (156)
T ss_dssp             CCSSSSCEECCSSCCC-TTTTTS-CSCSCCSEEECCSCSSCCEECGGG-----SCSCCCCSEEECCSSCCCEECTTGGGS
T ss_pred             CcCCCCeEEecCCCCc-cCcccc-cCccccCeeecCCCccccccCchh-----hccccccCcceeeccccCCcccccccc
Confidence            4445556676666655 344444 56778888888655 477776653     777888888888888888764 45777


Q ss_pred             cCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCccc
Q 037941          135 LTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTH  174 (308)
Q Consensus       135 l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~  174 (308)
                      +++|+.|++++|. ++.+|.+.+.. .+|+.|++++|.+.
T Consensus        79 l~~L~~L~Ls~N~-l~~l~~~~~~~-~~l~~L~L~~Np~~  116 (156)
T d2ifga3          79 TPRLSRLNLSFNA-LESLSWKTVQG-LSLQELVLSGNPLH  116 (156)
T ss_dssp             CSCCCEEECCSSC-CSCCCSTTTCS-CCCCEEECCSSCCC
T ss_pred             cccccceeccCCC-CcccChhhhcc-ccccccccCCCccc
Confidence            8888888888887 77777764443 36888888877765

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.02  E-value=1.8e-11  Score=107.99  Aligned_cols=85  Identities=19%  Similarity=0.166  Sum_probs=57.3

Q ss_pred             CCCCeeEEeecCCCC-----CCCCcC-CCCCccEEEecCCCCcCCCCchhhc----CCCCccEEEccCCCCCC-----CC
Q 037941           36 QKDPIAISHPCRDIQ-----ELPEKL-ECPKLKLFFLFSEKLSLVIPDLFFE----GVPSLQVLSLNGFHFPS-----LP  100 (308)
Q Consensus        36 ~~~l~~L~l~~~~~~-----~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~----~l~~L~~L~l~~~~~~~-----lp  100 (308)
                      .++++.|++++|.+.     .+.... .+++|++|++++|.++..-...+..    ...+|++|++++|.++.     ++
T Consensus        26 l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~it~~~~~~l~  105 (460)
T d1z7xw1          26 LQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLS  105 (460)
T ss_dssp             HTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred             CCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcCCCCCCEEECCCCCcccccccccc
Confidence            678888999988874     223334 7888999999888775211111111    23478899998888763     33


Q ss_pred             CCCCCcccccccccccEEeecCCcCc
Q 037941          101 STLGDVATVGVLKKLVIFSFRNSHIE  126 (308)
Q Consensus       101 ~~~~~~~~l~~l~~L~~L~l~~~~i~  126 (308)
                      ..      +..+++|++|++++|.+.
T Consensus       106 ~~------l~~~~~L~~L~L~~N~i~  125 (460)
T d1z7xw1         106 ST------LRTLPTLQELHLSDNLLG  125 (460)
T ss_dssp             HH------TTSCTTCCEEECCSSBCH
T ss_pred             ch------hhccccccccccccccch
Confidence            33      567788999998888654

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.00  E-value=3.1e-10  Score=96.85  Aligned_cols=161  Identities=14%  Similarity=0.058  Sum_probs=81.6

Q ss_pred             cCCCCeeEEeecCCCC-----CCCCcC-CCCCccEEEecCCCCcC---CCCc------hhhcCCCCccEEEccCCCCCC-
Q 037941           35 MQKDPIAISHPCRDIQ-----ELPEKL-ECPKLKLFFLFSEKLSL---VIPD------LFFEGVPSLQVLSLNGFHFPS-   98 (308)
Q Consensus        35 ~~~~l~~L~l~~~~~~-----~~~~~~-~~~~L~~L~l~~~~~~~---~~~~------~~~~~l~~L~~L~l~~~~~~~-   98 (308)
                      ....++.|++++|.+.     .+.... ..++++.+.+.++....   ..+.      ..+...++|+.|++++|.+.. 
T Consensus        29 ~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~  108 (344)
T d2ca6a1          29 EDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPT  108 (344)
T ss_dssp             HCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTT
T ss_pred             hCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccccccccc
Confidence            3566777777776552     122223 56677777776654321   1111      112345667777777776653 


Q ss_pred             ----CCCCCCCcccccccccccEEeecCCcCcc-----cchh---------hhCcCCCCEEecCCCCCCCccCc----ch
Q 037941           99 ----LPSTLGDVATVGVLKKLVIFSFRNSHIEQ-----LPEE---------IGQLTRLKLLDLSTCSKLKSIRP----NV  156 (308)
Q Consensus        99 ----lp~~~~~~~~l~~l~~L~~L~l~~~~i~~-----l~~~---------~~~l~~L~~L~l~~~~~~~~~~~----~~  156 (308)
                          +...      +...++|++|++++|.+..     +...         ....+.|+.+.+++|. ++....    ..
T Consensus       109 ~~~~l~~~------l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~-i~~~~~~~l~~~  181 (344)
T d2ca6a1         109 AQEPLIDF------LSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR-LENGSMKEWAKT  181 (344)
T ss_dssp             THHHHHHH------HHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC-CTGGGHHHHHHH
T ss_pred             cccchhhh------hcccccchheecccccccccccccccccccccccccccccCcccceeeccccc-ccccccccccch
Confidence                1111      3445667777777766541     1111         1234566667666665 322111    11


Q ss_pred             hcCCCCCceEEccCCcccccccCCcccchhhhhcCCCCCEEEeeeccC
Q 037941          157 ISNLPRLEELYMGNSFTHWEVEGQNNASLAELNQLSRLTTLEMLILDA  204 (308)
Q Consensus       157 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  204 (308)
                      +...++|+.|++++|.+.....  .......+..+++|+.|++++|.+
T Consensus       182 l~~~~~L~~L~L~~n~i~~~g~--~~~l~~~l~~~~~L~~L~Ls~N~i  227 (344)
T d2ca6a1         182 FQSHRLLHTVKMVQNGIRPEGI--EHLLLEGLAYCQELKVLDLQDNTF  227 (344)
T ss_dssp             HHHCTTCCEEECCSSCCCHHHH--HHHHHTTGGGCTTCCEEECCSSCC
T ss_pred             hhhhhhhccccccccccccccc--ccchhhhhcchhhhcccccccccc
Confidence            3455667777777666552100  001112345566677777766654

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.91  E-value=1.4e-09  Score=92.78  Aligned_cols=233  Identities=14%  Similarity=0.042  Sum_probs=142.4

Q ss_pred             CCCCccEEEecCCCCcCCCCch---hhcCCCCccEEEccCCCCCCCCCC----CCC-cccccccccccEEeecCCcCcc-
Q 037941           57 ECPKLKLFFLFSEKLSLVIPDL---FFEGVPSLQVLSLNGFHFPSLPST----LGD-VATVGVLKKLVIFSFRNSHIEQ-  127 (308)
Q Consensus        57 ~~~~L~~L~l~~~~~~~~~~~~---~~~~l~~L~~L~l~~~~~~~lp~~----~~~-~~~l~~l~~L~~L~l~~~~i~~-  127 (308)
                      ....++.|++++|.+.......   .+...+.|+.++++++........    +.. ...+...++|++|++++|.++. 
T Consensus        29 ~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~  108 (344)
T d2ca6a1          29 EDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPT  108 (344)
T ss_dssp             HCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTT
T ss_pred             hCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccccccccc
Confidence            6788999999988765322222   234678899999888765533221    100 1224456789999999887762 


Q ss_pred             ----cchhhhCcCCCCEEecCCCCCCCccCcc-------------hhcCCCCCceEEccCCcccccccCCcccchhhhhc
Q 037941          128 ----LPEEIGQLTRLKLLDLSTCSKLKSIRPN-------------VISNLPRLEELYMGNSFTHWEVEGQNNASLAELNQ  190 (308)
Q Consensus       128 ----l~~~~~~l~~L~~L~l~~~~~~~~~~~~-------------~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~  190 (308)
                          +...+...++|++|++++|. ++.....             .....+.|+.+.+++|.+...   +.......+..
T Consensus       109 ~~~~l~~~l~~~~~L~~L~l~~n~-l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~---~~~~l~~~l~~  184 (344)
T d2ca6a1         109 AQEPLIDFLSKHTPLEHLYLHNNG-LGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENG---SMKEWAKTFQS  184 (344)
T ss_dssp             THHHHHHHHHHCTTCCEEECCSSC-CHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGG---GHHHHHHHHHH
T ss_pred             cccchhhhhcccccchheeccccc-ccccccccccccccccccccccccCcccceeeccccccccc---ccccccchhhh
Confidence                44556677889999998886 4321100             023467788898888877622   11223345677


Q ss_pred             CCCCCEEEeeeccCccc------cchhhc-cCCceeEeeccCccc--------ccCCCCcCceEEEeecCchhh-h----
Q 037941          191 LSRLTTLEMLILDAQVM------PRELFS-LGLERNKIFLGDVWS--------WTGKYETSRTLKLKLDNRMYL-E----  250 (308)
Q Consensus       191 l~~L~~L~l~~~~~~~~------p~~~~~-~~L~~l~i~~~~~~~--------~~~~~~~L~~L~L~~~~~~~~-~----  250 (308)
                      ++.|+.|+++.|.++.-      ...+.. ++|+.|++..+.+..        .....++|+.|+|+.|..... .    
T Consensus       185 ~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~  264 (344)
T d2ca6a1         185 HRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVV  264 (344)
T ss_dssp             CTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHH
T ss_pred             hhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHHHH
Confidence            88899999988876531      111222 778888887665422        245678899999888764321 1    


Q ss_pred             hhHHHH-hcccceeecCCccchhhhhhc----cCCCCCCcccEEecccc
Q 037941          251 HGIKML-LRRTEDLHLDKLNGLQNVLHE----LDGEGFPRLKHLLVQNA  294 (308)
Q Consensus       251 ~~~~~~-~~~L~~L~l~~~~~~~~~~~~----~~~~~~~~L~~L~l~~c  294 (308)
                      ..+... .+.|++|+++++ .++.....    ......+.|++|+++++
T Consensus       265 ~~l~~~~~~~L~~L~ls~N-~i~~~~~~~l~~~l~~~~~~L~~L~l~~N  312 (344)
T d2ca6a1         265 DAFSKLENIGLQTLRLQYN-EIELDAVRTLKTVIDEKMPDLLFLELNGN  312 (344)
T ss_dssp             HHHHTCSSCCCCEEECCSS-CCBHHHHHHHHHHHHHHCTTCCEEECTTS
T ss_pred             HHhhhccCCCCCEEECCCC-cCChHHHHHHHHHHHccCCCCCEEECCCC
Confidence            111111 256889999884 44432211    11124678899998876

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.87  E-value=6e-10  Score=98.01  Aligned_cols=105  Identities=19%  Similarity=0.177  Sum_probs=77.6

Q ss_pred             CCeeEEeecCCCCC--CCCcC-CCCCccEEEecCCCCcCCCC---chhhcCCCCccEEEccCCCCCC-----CCCCCCCc
Q 037941           38 DPIAISHPCRDIQE--LPEKL-ECPKLKLFFLFSEKLSLVIP---DLFFEGVPSLQVLSLNGFHFPS-----LPSTLGDV  106 (308)
Q Consensus        38 ~l~~L~l~~~~~~~--~~~~~-~~~~L~~L~l~~~~~~~~~~---~~~~~~l~~L~~L~l~~~~~~~-----lp~~~~~~  106 (308)
                      +++.|+++++.+.+  +.... .++++++|++.+|.++..-.   ...+..+++|++|++++|.++.     +...+   
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l---   79 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGL---   79 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTT---
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHH---
Confidence            57899999999954  23333 78999999999998763211   1223689999999999998752     22221   


Q ss_pred             ccccccccccEEeecCCcCcc-----cchhhhCcCCCCEEecCCCC
Q 037941          107 ATVGVLKKLVIFSFRNSHIEQ-----LPEEIGQLTRLKLLDLSTCS  147 (308)
Q Consensus       107 ~~l~~l~~L~~L~l~~~~i~~-----l~~~~~~l~~L~~L~l~~~~  147 (308)
                        .....+|++|++++|.++.     ++..+..+++|+.|++++|.
T Consensus        80 --~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~  123 (460)
T d1z7xw1          80 --QTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL  123 (460)
T ss_dssp             --CSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSB
T ss_pred             --hcCCCCCCEEECCCCCccccccccccchhhcccccccccccccc
Confidence              1123579999999999873     45667889999999999886

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.08  E-value=4.5e-07  Score=68.08  Aligned_cols=63  Identities=22%  Similarity=0.229  Sum_probs=36.6

Q ss_pred             hcCCCCccEEEccCCCCCCCCC--CCCCcccccccccccEEeecCCcCcccch-hhhCcCCCCEEecCCCC
Q 037941           80 FEGVPSLQVLSLNGFHFPSLPS--TLGDVATVGVLKKLVIFSFRNSHIEQLPE-EIGQLTRLKLLDLSTCS  147 (308)
Q Consensus        80 ~~~l~~L~~L~l~~~~~~~lp~--~~~~~~~l~~l~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~l~~~~  147 (308)
                      +..++.|++|++++|.++.++.  ..     +..+++|++|++++|.+++++. ......+|+.+++++|+
T Consensus        61 ~~~~~~L~~L~Ls~N~i~~l~~~~~~-----~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Np  126 (162)
T d1koha1          61 EENIPELLSLNLSNNRLYRLDDMSSI-----VQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNS  126 (162)
T ss_dssp             HHHCTTCCCCCCCSSCCCCCSGGGTH-----HHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTST
T ss_pred             HHhCCCCCEeeCCCccccCCchhHHH-----HhhCCcccccccccCccccchhhhhhhccccceeecCCCC
Confidence            3456777777777777665532  11     4456666666776666665554 12233456666666665

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.98  E-value=1e-06  Score=66.12  Aligned_cols=89  Identities=22%  Similarity=0.234  Sum_probs=64.5

Q ss_pred             ccccccccEEeecCCcCcccc---hhhhCcCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCcccccccCCcccch
Q 037941          109 VGVLKKLVIFSFRNSHIEQLP---EEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEVEGQNNASL  185 (308)
Q Consensus       109 l~~l~~L~~L~l~~~~i~~l~---~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~  185 (308)
                      ...+++|++|++++|+++.++   ..+..+++|+.|++++|. ++.++.-......+|+.+++.+|.+.........-..
T Consensus        61 ~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~-i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~  139 (162)
T d1koha1          61 EENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNE-LKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYIS  139 (162)
T ss_dssp             HHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSC-CCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHH
T ss_pred             HHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCc-cccchhhhhhhccccceeecCCCCcCcCcccchhHHH
Confidence            456899999999999998654   457789999999999998 7777763233456799999999988743221111112


Q ss_pred             hhhhcCCCCCEEE
Q 037941          186 AELNQLSRLTTLE  198 (308)
Q Consensus       186 ~~l~~l~~L~~L~  198 (308)
                      ..+..+|+|+.||
T Consensus       140 ~i~~~~P~L~~LD  152 (162)
T d1koha1         140 AIRERFPKLLRLD  152 (162)
T ss_dssp             HHHTTSTTCCEET
T ss_pred             HHHHHCCCCCEEC
Confidence            3456789999886

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.60  E-value=1.5e-05  Score=59.75  Aligned_cols=15  Identities=7%  Similarity=0.164  Sum_probs=7.0

Q ss_pred             hhhcCCCCCEEEeee
Q 037941          187 ELNQLSRLTTLEMLI  201 (308)
Q Consensus       187 ~l~~l~~L~~L~l~~  201 (308)
                      .+..-+.|+.|+++.
T Consensus       126 ~L~~n~sL~~l~l~~  140 (167)
T d1pgva_         126 AIEENESLLRVGISF  140 (167)
T ss_dssp             HHHHCSSCCEEECCC
T ss_pred             HHHhCCCccEeeCcC
Confidence            334444555555443

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.39  E-value=4.4e-05  Score=57.06  Aligned_cols=113  Identities=9%  Similarity=0.003  Sum_probs=63.5

Q ss_pred             CCCCccEEEecCC-CCcCCCCch---hhcCCCCccEEEccCCCCCC-CCCCCCCcccccccccccEEeecCCcCc-----
Q 037941           57 ECPKLKLFFLFSE-KLSLVIPDL---FFEGVPSLQVLSLNGFHFPS-LPSTLGDVATVGVLKKLVIFSFRNSHIE-----  126 (308)
Q Consensus        57 ~~~~L~~L~l~~~-~~~~~~~~~---~~~~l~~L~~L~l~~~~~~~-lp~~~~~~~~l~~l~~L~~L~l~~~~i~-----  126 (308)
                      +.++|++|+++++ .++......   .+...+.|+.|++++|.+.. -...+  ...+...+.|++|++++|.++     
T Consensus        13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~l--a~~L~~n~~L~~L~L~~n~i~~~g~~   90 (167)
T d1pgva_          13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGL--IELIETSPSLRVLNVESNFLTPELLA   90 (167)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTH--HHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred             CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHH--hhhhhhcccccceeeehhhcchHHHH
Confidence            3456666666653 233211111   12455667777777776651 01110  001445577888888888776     


Q ss_pred             ccchhhhCcCCCCEEecCCCCCCCccCc-------chhcCCCCCceEEccCCc
Q 037941          127 QLPEEIGQLTRLKLLDLSTCSKLKSIRP-------NVISNLPRLEELYMGNSF  172 (308)
Q Consensus       127 ~l~~~~~~l~~L~~L~l~~~~~~~~~~~-------~~~~~l~~L~~L~l~~~~  172 (308)
                      .+...+...+.|+.|++++|. ...+..       ..+..-+.|+.|++..+.
T Consensus        91 ~l~~aL~~n~sL~~L~l~~n~-~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~  142 (167)
T d1pgva_          91 RLLRSTLVTQSIVEFKADNQR-QSVLGNQVEMDMMMAIEENESLLRVGISFAS  142 (167)
T ss_dssp             HHHHHTTTTCCCSEEECCCCS-SCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             HHHHHHHhCCcCCEEECCCCc-CCCccHHHHHHHHHHHHhCCCccEeeCcCCC
Confidence            334456677788888888775 333321       124446778888887654

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.79  E-value=0.00027  Score=52.48  Aligned_cols=89  Identities=13%  Similarity=0.057  Sum_probs=42.8

Q ss_pred             cccccccEEeecCCcCc-----ccchhhhCcCCCCEEecCCCCCCCccCc----chhcCCCCCceEEcc--CCccccccc
Q 037941          110 GVLKKLVIFSFRNSHIE-----QLPEEIGQLTRLKLLDLSTCSKLKSIRP----NVISNLPRLEELYMG--NSFTHWEVE  178 (308)
Q Consensus       110 ~~l~~L~~L~l~~~~i~-----~l~~~~~~l~~L~~L~l~~~~~~~~~~~----~~~~~l~~L~~L~l~--~~~~~~~~~  178 (308)
                      ...++|++|++++|.++     .+...+...++++.+++++|. ++.-..    ..+...++|+.+++.  .|.+.+.  
T Consensus        43 ~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~-~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~--  119 (166)
T d1io0a_          43 KTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNF-ISGSGILALVEALQSNTSLIELRIDNQSQPLGNN--  119 (166)
T ss_dssp             TTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSC-CCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHH--
T ss_pred             hcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhcccc-ccchhHHHHHHHHHhCccccEEeeccCCCcCcHH--
Confidence            34555666666666554     223334455666666666655 221110    113445566654443  3333311  


Q ss_pred             CCcccchhhhhcCCCCCEEEeeec
Q 037941          179 GQNNASLAELNQLSRLTTLEMLIL  202 (308)
Q Consensus       179 ~~~~~~~~~l~~l~~L~~L~l~~~  202 (308)
                       ........+...+.|++|++..+
T Consensus       120 -~~~~La~~L~~n~~L~~L~l~~~  142 (166)
T d1io0a_         120 -VEMEIANMLEKNTTLLKFGYHFT  142 (166)
T ss_dssp             -HHHHHHHHHHHCSSCCEEECCCS
T ss_pred             -HHHHHHHHHHhCCCcCEEeCcCC
Confidence             01122234556667777776554

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.64  E-value=0.00065  Score=50.27  Aligned_cols=84  Identities=17%  Similarity=0.122  Sum_probs=46.7

Q ss_pred             CCCCccEEEccCCCCCC-----CCCCCCCcccccccccccEEeecCCcCc-----ccchhhhCcCCCCEEecCC--CCCC
Q 037941           82 GVPSLQVLSLNGFHFPS-----LPSTLGDVATVGVLKKLVIFSFRNSHIE-----QLPEEIGQLTRLKLLDLST--CSKL  149 (308)
Q Consensus        82 ~l~~L~~L~l~~~~~~~-----lp~~~~~~~~l~~l~~L~~L~l~~~~i~-----~l~~~~~~l~~L~~L~l~~--~~~~  149 (308)
                      ..++|+.|++++|.++.     +-..      +.....++++++++|.+.     .+...+...++|+.+++..  |. +
T Consensus        44 ~n~~L~~L~Ls~n~l~~~~~~~L~~~------l~~~~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~-i  116 (166)
T d1io0a_          44 TNTYVKKFSIVGTRSNDPVAFALAEM------LKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQP-L  116 (166)
T ss_dssp             TCCSCCEEECTTSCCCHHHHHHHHHH------HHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSC-C
T ss_pred             cCCccCeeeccCCcccHHHHHHHHHH------HhhcccchhhhhccccccchhHHHHHHHHHhCccccEEeeccCCCc-C
Confidence            55666666666666541     1111      445567777777777665     3344566667777655543  33 3


Q ss_pred             CccC----cchhcCCCCCceEEccCCc
Q 037941          150 KSIR----PNVISNLPRLEELYMGNSF  172 (308)
Q Consensus       150 ~~~~----~~~~~~l~~L~~L~l~~~~  172 (308)
                      +.-.    ...+...++|+.|++..+.
T Consensus       117 ~~~~~~~La~~L~~n~~L~~L~l~~~~  143 (166)
T d1io0a_         117 GNNVEMEIANMLEKNTTLLKFGYHFTQ  143 (166)
T ss_dssp             CHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             cHHHHHHHHHHHHhCCCcCEEeCcCCC
Confidence            2211    0124456778888776654