Citrus Sinensis ID: 037945

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200------
Protein Sequence
MDSLINPIMDYLVCPLCGVISKHCGYVCGLTDSLNSLREAGRDLVNITRDVEARVDLAVEQRLRPTHEVNGWLESAKIMLREVDYILHRGDEEIQKTCLRKTCFPGSWSSRDKLGKEASEKIVAVEELIGRGHFAVVAEKPPRAPVEERPIGKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHDFDL
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHccccEEEEEEEcccccHHHHHHHHHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHccccccHcHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEccccccccccccccccccHHHHHHHHHHHHHccccEEEEEEccccccHHHHHHHHHHHHHcccccccc
Coil and Loop (DISEMBL)
mdslinpimdylvcplcgviskhcgyvcglTDSLNSLREAGRDLVNITRDVEARVDLAVEQrlrpthevnGWLESAKIMLREVDYILhrgdeeiqktclrktcfpgswssrdklgkEASEKIVAVEELIGrghfavvaekpprapveerpigktvglDSIISEVWRCIEDHNEKVIglygmggvgkTTLLKKLNNKfrdtehdfdl
Flexible Loop (DISEMBL)
MDSLINPIMDYLVCPLCGVISKHCGYVCGLTDSLNSLREAGRDLVNITRDVEARVDLaveqrlrpthevngwlesaKIMLREVDYILHRGdeeiqktclrktcfpgswssrdklgkEASEKIVAVEeligrghfavvaekpprapveerpigktvgldSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKlnnkfrdtehdfdl
Low Complexity Region (SEG)
MDSLINPIMDYLVCPLCGVISKHCGYVCGLTDSLNSLREAGRDLVNITRDVEARVDLAVEQRLRPTHEVNGWLESAKIMLREVDYILHRGDEEIQKTCLRKTCFPGSWSSRDKLGKEASEKIVAVEELIGRGHFAVVAEKPPRAPVEERPIGKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGkttllkklnnkFRDTEHDFDL
Disordered region (IsUnstruct)
***LINPIMDYLVCPLCGVISKHCGYVCGLTDSLNSLREAGRDLVNITRDVEARVDLAVEQRLRPTHEVNGWLESAKIMLREVDYILHRGDEEIQKTCLRKTCFPGSWSS********SEKIVAVEELIGRGHFAVVAE**********PIGKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLN************
Disordered Region (DISOPRED)
MDSLINPIMDYLVCPLCGVISKHCGYVCGLTDSLNSLREAGRDLVNITRDVEARVDLAVEQRLRPTHEVNGWLESAKIMLREVDYILHRGDEEIQKTCLRKTCFPGSWSSRDKLGKEASEKIVAVEELIGRGHFAVVAEKPPRAPVEERPIGKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDT*HDFDL
Disordered Region (DISEMBL)
MDSLINPIMDYLVCPLCGVISKHCGYVCGLTDSLNSLREAGRDLVNITRDVEARVDLAVEQRLRPTHEVNGWLESAKIMLREVDYILHRGDEEIQKTCLRKTCFPGSWSSRDKLGKEASEKIVAVEELIGRGHFAVVAEKPPRAPVEERPIGKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFR********
Disordered Region (DISPRO)
*DSLINPIMDYLVCPLCGVISKHCGYVCGLTDSLNSLREAGRDLVNITRDVEARVDLAVEQRLRPTHEVNGWLESAKIMLREVDYILHRGDEEIQKTCLRKTCFPGSWSSRDKLGKEASEKIVAVEELIGRGHFAVVAEKPPRAPVEERPIGKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTE*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDSLINPIMDYLVCPLCGVISKHCGYVCGLTDSLNSLREAGRDLVNITRDVEARVDLAVEQRLRPTHEVNGWLESAKIMLREVDYILHRGDEEIQKTCLRKTCFPGSWSSRDKLGKEASEKIVAVEELIGRGHFAVVAEKPPRAPVEERPIGKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHDFDL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	206	2.2.26 [Sep-21-2011]
Q9LMP6	851	Probable disease resistan	yes	no	0.917	0.222	0.342	1e-23
Q9FG91	848	Probable disease resistan	no	no	0.907	0.220	0.356	2e-23
Q9FG90	862	Probable disease resistan	no	no	0.956	0.228	0.325	1e-22
Q9FLB4	874	Putative disease resistan	no	no	0.951	0.224	0.338	2e-21
Q9C8K0	854	Probable disease resistan	no	no	0.917	0.221	0.321	2e-21
Q8RXS5	888	Probable disease resistan	no	no	0.946	0.219	0.323	9e-21
O22727	967	Probable disease resistan	no	no	0.946	0.201	0.323	1e-20
P60839	884	Probable disease resistan	no	no	0.839	0.195	0.357	3e-20
P60838	894	Probable disease resistan	no	no	0.878	0.202	0.331	4e-20
O64973	889	Disease resistance protei	no	no	0.912	0.211	0.328	6e-20

>sp|Q9LMP6|DRL3_ARATH Probable disease resistance protein At1g15890 OS=Arabidopsis thaliana GN=At1g15890 PE=3 SV=2

 Score =  109 bits (273), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 65/190 (34%), Positives = 102/190 (53%), Gaps = 1/190 (0%)

Query: 17  CGVISKHCGYVCGLTDSLNSLREAGRDLVNITRDVEARVDLAVEQRLRPTHEVNGWLESA 76
           CG +     Y+  +  +L +L+   ++L     D+  RV +  ++ L+   +V GWL   
Sbjct: 19  CGCLFGDRNYILKMEANLEALQNTMQELEERRDDLLRRVVIEEDKGLQRLAQVQGWLSRV 78

Query: 77  KIMLREVDYILHRGDEEIQKTCLRKTCFPGSWSSRDKLGKEASEKIVAVEELIGRGHFAV 136
           K +  +V+ +L     + ++ CL   C     S R+  G    +K+  VE L+ +G F V
Sbjct: 79  KDVCSQVNDLLKAKSIQTERLCLCGYCSKNFISGRN-YGINVLKKLKHVEGLLAKGVFEV 137

Query: 137 VAEKPPRAPVEERPIGKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNK 196
           VAEK P   VE++ I  TVGLD+++   W  +     + +GLYGMGGVGKTTLL  +NNK
Sbjct: 138 VAEKIPAPKVEKKHIQTTVGLDAMVGRAWNSLMKDERRTLGLYGMGGVGKTTLLASINNK 197

Query: 197 FRDTEHDFDL 206
           F +  + FDL
Sbjct: 198 FLEGMNGFDL 207

Probable disease resistance protein.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9FG91|DRL32_ARATH Probable disease resistance protein At5g43730 OS=Arabidopsis thaliana GN=At5g43730 PE=2 SV=1

 Score =  108 bits (271), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 68/191 (35%), Positives = 107/191 (56%), Gaps = 4/191 (2%)

Query: 17  CGVISKHCGYVCGLTDSLNSLREAGRDLVNITRDVEARVDLAVEQRLRPTHEVNGWLESA 76
           CG       Y+  +  +L++L++   +L N   D+ ARV +  ++ L+    VNGWL   
Sbjct: 18  CGCFLSDSNYIHLMESNLDALQKTMEELKNGRDDLLARVSIEEDKGLQRLALVNGWLSRV 77

Query: 77  KIMLREVDYILHRGDEEIQKTCLRKTCFPGSWSSRDKLGKEASEKIVAVEELIGRGHFAV 136
           +I+  E   +L     E  + CL   C     SS +  GK   + +  V+EL+ + +F V
Sbjct: 78  QIVESEFKDLLEAMSIETGRLCLFGYCSEDCISSYNYGGK-VMKNLEEVKELLSKKNFEV 136

Query: 137 VAEKP-PRAPVEERPIGKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNN 195
           VA+K  P+A  E++ I  TVGLD+++   W  + D   + +GLYGMGG+GKTTLL+ LNN
Sbjct: 137 VAQKIIPKA--EKKHIQTTVGLDTMVGIAWESLIDDEIRTLGLYGMGGIGKTTLLESLNN 194

Query: 196 KFRDTEHDFDL 206
           KF + E +FD+
Sbjct: 195 KFVELESEFDV 205

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FG90|DRL33_ARATH Probable disease resistance protein At5g43740 OS=Arabidopsis thaliana GN=At5g43740 PE=2 SV=1

 Score =  106 bits (265), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 67/206 (32%), Positives = 112/206 (54%), Gaps = 9/206 (4%)

Query: 8   IMDYLVCPLCGVISKHCG-------YVCGLTDSLNSLREAGRDLVNITRDVEARVDLAVE 60
           ++ +LV P   + +  CG       Y+  +  +L++L++   +L N   D+  RV +  +
Sbjct: 1   MLGWLVIPWNQIFTAACGCFLSDRNYIHMMESNLDALQKTMEELKNGRDDLLGRVSIEED 60

Query: 61  QRLRPTHEVNGWLESAKIMLREVDYILHRGDEEIQKTCLRKTCFPGSWSSRDKLGKEASE 120
           + L+   +VNGWL   +I+  E   +L     E  + CL   C     SS +  G++ S+
Sbjct: 61  KGLQRLAQVNGWLSRVQIVESEFKDLLEAMSIETGRLCLLGYCSEDCISSYN-YGEKVSK 119

Query: 121 KIVAVEELIGRGHFAVVAEKPPRAPVEERPIGKTVGLDSIISEVWRCIEDHNEKVIGLYG 180
            +  V+EL+ +  F +VA++     VE++ I  TVGLD ++   W  + +     +GLYG
Sbjct: 120 MLEEVKELLSKKDFRMVAQEIIHK-VEKKLIQTTVGLDKLVEMAWSSLMNDEIGTLGLYG 178

Query: 181 MGGVGKTTLLKKLNNKFRDTEHDFDL 206
           MGGVGKTTLL+ LNNKF + E +FD+
Sbjct: 179 MGGVGKTTLLESLNNKFVELESEFDV 204

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FLB4|DRL31_ARATH Putative disease resistance protein At5g05400 OS=Arabidopsis thaliana GN=At5g05400 PE=2 SV=1

 Score =  102 bits (254), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 67/198 (33%), Positives = 100/198 (50%), Gaps = 2/198 (1%)

Query: 10  DYLVCPLCGVISKHCGYVCGLTDSLNSLREAGRDLVNITRDVEARVDLAVEQRLRPTHEV 69
           D  V  L   +S++      L D + +L++  R L     D+  R+ +  ++ L    EV
Sbjct: 12  DQAVNNLTSCLSRNQNRFRNLVDHVAALKKTVRQLEARRDDLLKRIKVQEDRGLNLLDEV 71

Query: 70  NGWLESAKIMLREVDYILHRGDEEIQKTCLRKTCFPGSWSSRDKLGKEASEKIVAVEELI 129
             WL   +  + E   IL + DEEI   C  + C      S D   K    K+  VE L+
Sbjct: 72  QQWLSEVESRVCEAHDILSQSDEEIDNLCCGQYCSKRCKYSYD-YSKSVINKLQDVENLL 130

Query: 130 GRGHFAVVAEKPPRAPVEERPIGK-TVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTT 188
            +G F  VA+K P   VEER   +  VG ++I+   W  + +    ++G+YGMGGVGKTT
Sbjct: 131 SKGVFDEVAQKGPIPKVEERLFHQEIVGQEAIVESTWNSMMEVGVGLLGIYGMGGVGKTT 190

Query: 189 LLKKLNNKFRDTEHDFDL 206
           LL ++NNKFR   +DFD+
Sbjct: 191 LLSQINNKFRTVSNDFDI 208

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C8K0|DRL5_ARATH Probable disease resistance protein At1g51480 OS=Arabidopsis thaliana GN=At1g51480 PE=2 SV=2

 Score =  102 bits (253), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 61/190 (32%), Positives = 99/190 (52%), Gaps = 1/190 (0%)

Query: 17  CGVISKHCGYVCGLTDSLNSLREAGRDLVNITRDVEARVDLAVEQRLRPTHEVNGWLESA 76
           CG       Y+  +  +L+ L     +L N   D+  RV +  ++ L+   +V GW+   
Sbjct: 18  CGCFFSDRNYIHKMEANLDDLHTTMEELKNGRDDLLRRVSIEEDKGLQQLAQVKGWISRV 77

Query: 77  KIMLREVDYILHRGDEEIQKTCLRKTCFPGSWSSRDKLGKEASEKIVAVEELIGRGHFAV 136
           +I+      +L     E  + CL   C     SS +  G++  + +  V+EL+ + HF V
Sbjct: 78  EIVESRFKDLLEDKSTETGRLCLFGFCSENCISSYN-YGEKVMKNLEEVKELLSKKHFEV 136

Query: 137 VAEKPPRAPVEERPIGKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNK 196
           VA K P   VEE+ I  TVGL +++   W+ + +   + + L+GMGGVGKTTLL  +NNK
Sbjct: 137 VAHKIPVPKVEEKNIHTTVGLYAMVEMAWKSLMNDEIRTLCLHGMGGVGKTTLLACINNK 196

Query: 197 FRDTEHDFDL 206
           F + E +FD+
Sbjct: 197 FVELESEFDV 206

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8RXS5|DRL40_ARATH Probable disease resistance protein At5g63020 OS=Arabidopsis thaliana GN=At5g63020 PE=2 SV=2

 Score =  100 bits (248), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 64/198 (32%), Positives = 107/198 (54%), Gaps = 3/198 (1%)

Query: 10  DYLVCPLCGVISKHCGYVCGLTDSLNSLREAGRDLVNITRDVEARVDLAVEQR-LRPTHE 68
           D L   +C  ++++  Y+ GL ++L +L+ A   +     D+  ++ L+ E+R L+    
Sbjct: 12  DQLTKNVCSCLNRNGDYIHGLEENLTALQRALEQIEQRREDLLRKI-LSEERRGLQRLSV 70

Query: 69  VNGWLESAKIMLREVDYILHRGDEEIQKTCLRKTCFPGSWSSRDKLGKEASEKIVAVEEL 128
           V GW+   + ++  V+ ++     ++Q+ CL   C     SS  + GK   + I  VE L
Sbjct: 71  VQGWVSKVEAIVPRVNELVRMRSVQVQRLCLCGFCSKNLVSSY-RYGKRVMKMIEEVEVL 129

Query: 129 IGRGHFAVVAEKPPRAPVEERPIGKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTT 188
             +G FAVVAE+   A VEERP    V +D ++   W  + +    ++GL+GMGGVGKTT
Sbjct: 130 RYQGDFAVVAERVDAARVEERPTRPMVAMDPMLESAWNRLMEDEIGILGLHGMGGVGKTT 189

Query: 189 LLKKLNNKFRDTEHDFDL 206
           LL  +NN+F     +FD+
Sbjct: 190 LLSHINNRFSRVGGEFDI 207

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|O22727|DRL16_ARATH Probable disease resistance protein At1g61190 OS=Arabidopsis thaliana GN=At1g61190 PE=3 SV=1

 Score = 99.8 bits (247), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 65/201 (32%), Positives = 103/201 (51%), Gaps = 6/201 (2%)

Query: 6   NPIMDYLVCPLCGVISKHCGYVCGLTDSLNSLREAGRDLVNITRDVEARVDLAVEQRLRP 65
           + ++D ++  LCG      GY+  L  +L +L+    DL     +V+ +V     +  + 
Sbjct: 12  DQMLDRIIRCLCGK-----GYIRNLEKNLRALQREMEDLRATQHEVQNKVAREESRHQQR 66

Query: 66  THEVNGWLESAKIMLREVDYILHRGDEEIQKTCLRKTCFPGSWSSRDKLGKEASEKIVAV 125
              V  WL+    +  E   +L     E+QK CL   C     SS  K GK     +  V
Sbjct: 67  LEAVQVWLDRVNSIDIECKDLLSVSPVELQKLCLCGLCSKYVCSSY-KYGKRVFLLLEEV 125

Query: 126 EELIGRGHFAVVAEKPPRAPVEERPIGKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVG 185
            +L   G+F  V++ PPR+ VEERP   T+G + ++ + W  + +    ++GL+GMGGVG
Sbjct: 126 TKLKSEGNFDEVSQPPPRSEVEERPTQPTIGQEEMLKKAWNRLMEDGVGIMGLHGMGGVG 185

Query: 186 KTTLLKKLNNKFRDTEHDFDL 206
           KTTL KK++NKF +T   FD+
Sbjct: 186 KTTLFKKIHNKFAETGGTFDI 206

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|P60839|DRL2_ARATH Probable disease resistance protein At1g12290 OS=Arabidopsis thaliana GN=At1g12290 PE=2 SV=1

 Score = 98.2 bits (243), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 64/179 (35%), Positives = 98/179 (54%), Gaps = 6/179 (3%)

Query: 26  YVCGLTDSLNSLREAGRDLVNITRDVEARVDLAVEQRLRPTHEVNGWLESAKIMLREVDY 85
           Y+  + ++L SL EA  DL  +  D+  +V  A E  L+  H++  WL+  K +  + + 
Sbjct: 28  YIQNIKENLTSLEEAMEDLKALRDDLLRKVQTAEEGGLQRLHQIKVWLKRVKTIESQFND 87

Query: 86  ILHRGDEEIQKTCLRKTCFPGSWSSR--DKLGKEASEKIVAVEELIGRGHFAVVAEKPPR 143
           +      E+Q+ C    C  GS + R     G+     +  VE+L  +G F  VA    R
Sbjct: 88  LDSSRTVELQRLC---CCGVGSRNLRLSYDYGRRVFLMLNIVEDLKSKGIFEEVAHPATR 144

Query: 144 APVEERPIGKT-VGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTE 201
           A  EERP+  T VG ++I+ + W  + D   K++GLYGMGGVGKTTLL ++NN+F DT+
Sbjct: 145 AVGEERPLQPTIVGQETILEKAWDHLMDDGTKIMGLYGMGGVGKTTLLTQINNRFCDTD 203

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|P60838|DRL1_ARATH Probable disease resistance protein At1g12280 OS=Arabidopsis thaliana GN=At1g12280 PE=3 SV=1

 Score = 97.8 bits (242), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 61/184 (33%), Positives = 97/184 (52%), Gaps = 3/184 (1%)

Query: 23  HCGYVCGLTDSLNSLREAGRDLVNITRDVEARVDLAVEQRLRP-THEVNGWLESAKIMLR 81
           + GY+C L+ ++ ++++    L     DV+ RVD+    R R    +V GWL +   +  
Sbjct: 25  NVGYICELSKNVVAMKKDMEVLKKKRDDVKRRVDIEEFTRRRERLSQVQGWLTNVSTVEN 84

Query: 82  EVDYILHRGDEEIQKTCLRKTCFPGSWSSRDKLGKEASEKIVAVEELIGRGHFAVVAEKP 141
           + + +L   D E+Q+ CL   C      S    GK     +  +E L  +G F  V    
Sbjct: 85  KFNELLTTNDAELQRLCLFGFCSKNVKMSY-LYGKRVVLMLKEIESLSSQGDFDTVTLAT 143

Query: 142 PRAPVEERPIGKT-VGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDT 200
           P A +EE PI  T VG ++++  VW  + +  ++++GLYGMGGVGKTTLL ++NNKF + 
Sbjct: 144 PIARIEEMPIQPTIVGQETMLERVWTRLTEDGDEIVGLYGMGGVGKTTLLTRINNKFSEK 203

Query: 201 EHDF 204
              F
Sbjct: 204 CSGF 207

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|O64973|RPS5_ARATH Disease resistance protein RPS5 OS=Arabidopsis thaliana GN=RPS5 PE=1 SV=2

 Score = 97.4 bits (241), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 68/207 (32%), Positives = 105/207 (50%), Gaps = 19/207 (9%)

Query: 10  DYLVCPLCGVISKHCGYVCGLTDSLNSLREAGRDL----VNITRDVEARVDLAVEQRLRP 65
           D +V     ++     Y+  L+ +L SL++A R L     ++ R +E       +QRL  
Sbjct: 12  DQVVSQFSQLLCVRGSYIHNLSKNLASLQKAMRMLKARQYDVIRRLETEEFTGRQQRL-- 69

Query: 66  THEVNGWLESAKIMLREVDYILHRGDEEIQKTCLRKTCFPGSWSSRD-----KLGKEASE 120
             +V  WL S  I+  + + +L   + E+Q+ CL   C      S+D     + GK    
Sbjct: 70  -SQVQVWLTSVLIIQNQFNDLLRSNEVELQRLCLCGFC------SKDLKLSYRYGKRVIM 122

Query: 121 KIVAVEELIGRGHFAVVAEKPPRAPVEERPIGKT-VGLDSIISEVWRCIEDHNEKVIGLY 179
            +  VE L  +G F VV+E  P A V+E P   T VG + ++ + W  + +    ++GLY
Sbjct: 123 MLKEVESLSSQGFFDVVSEATPFADVDEIPFQPTIVGQEIMLEKAWNRLMEDGSGILGLY 182

Query: 180 GMGGVGKTTLLKKLNNKFRDTEHDFDL 206
           GMGGVGKTTLL K+NNKF   +  FD+
Sbjct: 183 GMGGVGKTTLLTKINNKFSKIDDRFDV 209

Disease resistance (R) protein that specifically recognizes the avrPphB type III effector avirulence protein from Pseudomonas syringae. Also confers resistance against Hyaloperonospora parasitica (downy mildew). Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Requires PBS1 to trigger the defense reaction against avrPphB. Probably triggers the defense mechanism when PBS1 is cleaved by avrPphB, suggesting that it detects indirectly the protease activity of avrPphB, and possibly binds to the cleaved RPS5.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	206
359494501	781	PREDICTED: probable disease resistance p	0.970	0.256	0.490	8e-44
147815260	2471	hypothetical protein VITISV_010987 [Viti	0.970	0.080	0.490	1e-43
225442519	937	PREDICTED: disease resistance protein RF	0.970	0.213	0.465	9e-43
225442517	909	PREDICTED: probable disease resistance p	0.970	0.220	0.460	2e-42
147794278	955	hypothetical protein VITISV_031554 [Viti	0.970	0.209	0.470	2e-42
359482574	888	PREDICTED: probable disease resistance p	0.975	0.226	0.465	1e-41
225442539	882	PREDICTED: probable disease resistance p	0.966	0.225	0.470	1e-40
147838868	882	hypothetical protein VITISV_011431 [Viti	0.966	0.225	0.470	1e-40
147859094	881	hypothetical protein VITISV_018933 [Viti	0.941	0.220	0.475	2e-40
297743218	927	unnamed protein product [Vitis vinifera]	0.970	0.215	0.450	6e-40

>gi|359494501|ref|XP_002266171.2| PREDICTED: probable disease resistance protein At5g63020-like [Vitis vinifera]

 Score =  182 bits (462), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 99/202 (49%), Positives = 134/202 (66%), Gaps = 2/202 (0%)

Query: 5   INPIMDYLVCPLCGVISKHCGYVCGLTDSLNSLREAGRDLVNITRDVEARVDLAVEQRLR 64
           + PIMD +   L    SKH  YV  L ++L SLR    +L N+  DV+ RV+ A +++++
Sbjct: 4   VTPIMD-VATRLWSCASKHSSYVIDLQENLCSLRNEMEELKNVGEDVKRRVEDAEKRQMK 62

Query: 65  PTHEVNGWLESAKIMLREVDYILHRGDEEIQKTCLRKTCFPGSWSSRDKLGKEASEKIVA 124
             +EVNGWL S   + REV+ IL +GD+EIQK CLR  C      S  K+GK A EKI A
Sbjct: 63  RRNEVNGWLNSLTALEREVNEILEKGDQEIQKKCLRNCCTRNCRFSY-KIGKMAREKIPA 121

Query: 125 VEELIGRGHFAVVAEKPPRAPVEERPIGKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGV 184
           V EL  +GHF VVA+  P APV+E+P+ K+VGL+ +  E+WR +ED    +IGLYGMGGV
Sbjct: 122 VSELKNKGHFDVVADILPSAPVDEKPMEKSVGLNLMFGEIWRWLEDEKVGIIGLYGMGGV 181

Query: 185 GKTTLLKKLNNKFRDTEHDFDL 206
           GKTTL+KK+NN+F  T+  FD+
Sbjct: 182 GKTTLMKKINNEFLKTKLGFDV 203

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147815260|emb|CAN74430.1| hypothetical protein VITISV_010987 [Vitis vinifera]

 Score =  181 bits (460), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 99/202 (49%), Positives = 134/202 (66%), Gaps = 2/202 (0%)

Query: 5    INPIMDYLVCPLCGVISKHCGYVCGLTDSLNSLREAGRDLVNITRDVEARVDLAVEQRLR 64
            + PIMD +   L    SKH  YV  L ++L SLR    +L N+  DV+ RV+ A +++++
Sbjct: 1630 VTPIMD-VATRLWSCASKHSSYVIDLQENLCSLRNEMEELKNVGEDVKRRVEDAEKRQMK 1688

Query: 65   PTHEVNGWLESAKIMLREVDYILHRGDEEIQKTCLRKTCFPGSWSSRDKLGKEASEKIVA 124
              +EVNGWL S   + REV+ IL +GD+EIQK CLR  C      S  K+GK A EKI A
Sbjct: 1689 RRNEVNGWLNSLTALEREVNEILEKGDQEIQKKCLRNCCTRNCRFSY-KIGKMAREKIPA 1747

Query: 125  VEELIGRGHFAVVAEKPPRAPVEERPIGKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGV 184
            V EL  +GHF VVA+  P APV+E+P+ K+VGL+ +  E+WR +ED    +IGLYGMGGV
Sbjct: 1748 VSELKNKGHFDVVADILPSAPVDEKPMEKSVGLNLMFGEIWRWLEDEKVGIIGLYGMGGV 1807

Query: 185  GKTTLLKKLNNKFRDTEHDFDL 206
            GKTTL+KK+NN+F  T+  FD+
Sbjct: 1808 GKTTLMKKINNEFLKTKLGFDV 1829

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225442519|ref|XP_002278659.1| PREDICTED: disease resistance protein RFL1 [Vitis vinifera]

 Score =  178 bits (452), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 94/202 (46%), Positives = 140/202 (69%), Gaps = 2/202 (0%)

Query: 5   INPIMDYLVCPLCGVISKHCGYVCGLTDSLNSLREAGRDLVNITRDVEARVDLAVEQRLR 64
           ++PI+D +V  +    +KH  Y+  L +++ SLR A ++L N+  DV+ RV+L  +++++
Sbjct: 4   VSPILD-VVTRVWNCTAKHAVYIRDLQENMESLRNAMQELKNVYEDVKGRVELEEQRQMK 62

Query: 65  PTHEVNGWLESAKIMLREVDYILHRGDEEIQKTCLRKTCFPGSWSSRDKLGKEASEKIVA 124
            T+EV+GW  S   M  EV+ IL +GD EIQK C  +TC P +  S  KLGK+AS+K+ A
Sbjct: 63  RTNEVDGWFHSVLAMELEVNEILEKGDHEIQKKC-PETCCPRNCRSSYKLGKKASKKLGA 121

Query: 125 VEELIGRGHFAVVAEKPPRAPVEERPIGKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGV 184
           V EL  +G F VVA+  P+APV+ERP+ KTVGLD + +EV RCI+D    +IGLYGMGG 
Sbjct: 122 VTELRSKGRFDVVADGLPQAPVDERPMEKTVGLDLMFTEVCRCIQDEELGIIGLYGMGGA 181

Query: 185 GKTTLLKKLNNKFRDTEHDFDL 206
           GKTT++ K+NN++  T +DF++
Sbjct: 182 GKTTIMTKINNEYFKTCNDFEV 203

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225442517|ref|XP_002278567.1| PREDICTED: probable disease resistance protein At5g63020-like [Vitis vinifera]

 Score =  177 bits (450), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 93/202 (46%), Positives = 138/202 (68%), Gaps = 2/202 (0%)

Query: 5   INPIMDYLVCPLCGVISKHCGYVCGLTDSLNSLREAGRDLVNITRDVEARVDLAVEQRLR 64
           ++PI+D +V  L    +KH   +  L  +++SLR A ++L ++  DV  RV+   ++++R
Sbjct: 4   VSPILD-VVTRLWDCTAKHAVSIRDLQQNMDSLRNAMQELRDVHDDVNRRVEREEQRQMR 62

Query: 65  PTHEVNGWLESAKIMLREVDYILHRGDEEIQKTCLRKTCFPGSWSSRDKLGKEASEKIVA 124
            T+EVNGWL   ++M +EV+ IL +GD+EIQK C+  +C P +  SR KLGK+ASE   A
Sbjct: 63  RTNEVNGWLHRVQVMEKEVNEILQKGDQEIQKKCIGTSC-PRNCRSRYKLGKKASEMFGA 121

Query: 125 VEELIGRGHFAVVAEKPPRAPVEERPIGKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGV 184
           + +L  +G F VVA+  P+APV+ERP+ KTVGLD + +EV RCI+D    +IGLYGMGG 
Sbjct: 122 LTDLRNKGRFDVVADSLPQAPVDERPLEKTVGLDLMYAEVCRCIQDEQLGIIGLYGMGGA 181

Query: 185 GKTTLLKKLNNKFRDTEHDFDL 206
           GKTTL+ K+NN+F     DF++
Sbjct: 182 GKTTLMTKVNNEFIRASKDFEI 203

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147794278|emb|CAN69161.1| hypothetical protein VITISV_031554 [Vitis vinifera]

 Score =  177 bits (449), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 95/202 (47%), Positives = 140/202 (69%), Gaps = 2/202 (0%)

Query: 5   INPIMDYLVCPLCGVISKHCGYVCGLTDSLNSLREAGRDLVNITRDVEARVDLAVEQRLR 64
           ++PI+D +V  +    +KH  Y+  L +++ SLR A ++L N+  DV+ RV+L  +++++
Sbjct: 4   VSPILD-VVTRVWNCTAKHAVYIRDLQENMESLRNAMQELKNVYEDVKGRVELEEQRQMK 62

Query: 65  PTHEVNGWLESAKIMLREVDYILHRGDEEIQKTCLRKTCFPGSWSSRDKLGKEASEKIVA 124
            T+EV+GWL S   M  EV+ IL + D EIQK C  +TC P +  S  KLGK+AS+K+ A
Sbjct: 63  RTNEVDGWLHSVLAMELEVNEILEKXDXEIQKKC-PETCCPRNCRSSYKLGKKASKKLGA 121

Query: 125 VEELIGRGHFAVVAEKPPRAPVEERPIGKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGV 184
           V EL  +G F VVA+  P+APV+ERP+ KTVGLD + +EV RCI+D    +IGLYGMGG 
Sbjct: 122 VTELRSKGRFDVVADGLPQAPVDERPMEKTVGLDLMFTEVCRCIQDEELGIIGLYGMGGA 181

Query: 185 GKTTLLKKLNNKFRDTEHDFDL 206
           GKTTL+ K+NN++  T +DF++
Sbjct: 182 GKTTLMTKVNNEYFKTCNDFEV 203

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359482574|ref|XP_003632788.1| PREDICTED: probable disease resistance protein At1g12280-like [Vitis vinifera]

 Score =  175 bits (443), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 95/204 (46%), Positives = 136/204 (66%), Gaps = 3/204 (1%)

Query: 4   LINPIMDYLVCPLCGVISKHCGYVCGLTDSLNSLREAGRDLVNITRDVEARVDLAVEQR- 62
            ++PI+D     L    +K   Y+  L ++L SLR A  DL  +  DV+ +VD A E R 
Sbjct: 3   FVSPILD-AASRLWDCTAKRAAYLTDLQETLESLRNAMEDLKTVAEDVKNKVDRAEEDRE 61

Query: 63  LRPTHEVNGWLESAKIMLREVDYILHRGDEEIQKTCLRKTCFPGSWSSRDKLGKEASEKI 122
           +R THEV+GWL   +++ +EV  IL +GD+EIQ+ CL  TC P +  S +K+GK  S+K+
Sbjct: 62  MRRTHEVDGWLHRVQVLEKEVREILQKGDQEIQQKCL-GTCCPKNCRSSNKMGKITSKKL 120

Query: 123 VAVEELIGRGHFAVVAEKPPRAPVEERPIGKTVGLDSIISEVWRCIEDHNEKVIGLYGMG 182
            AV +L  +G F+ VA++ PRA V+ERPI KTVGLD + +EV RCI+D    +IGLYGMG
Sbjct: 121 GAVTKLRSKGCFSDVADRLPRAAVDERPIEKTVGLDRMYAEVCRCIQDEQLGIIGLYGMG 180

Query: 183 GVGKTTLLKKLNNKFRDTEHDFDL 206
           G GKTTL+ K+NN++  T +DF++
Sbjct: 181 GAGKTTLVTKVNNEYFKTCNDFEV 204

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225442539|ref|XP_002278938.1| PREDICTED: probable disease resistance protein At5g63020 [Vitis vinifera]

 Score =  171 bits (434), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 95/202 (47%), Positives = 131/202 (64%), Gaps = 3/202 (1%)

Query: 5   INPIMDYLVCPLCGVISKHCGYVCGLTDSLNSLREAGRDLVNITRDVEARVDLAVEQRLR 64
           ++PI+D   C L    +K   Y+  L ++L SL  +  +L N++ DV  RV+   + + R
Sbjct: 4   VSPILDVATC-LWDCTAKRAVYIRKLEENLKSLESSTEELRNLSEDVMGRVEREEQLQSR 62

Query: 65  PTHEVNGWLESAKIMLREVDYILHRGDEEIQKTCLRKTCFPGSWSSRDKLGKEASEKIVA 124
            THEV+GWL + + M  EV+ IL  GD+EIQ+ CL  TC P +  S  KLGK    KI A
Sbjct: 63  RTHEVDGWLRAVQAMEAEVEEILQNGDQEIQQKCL-GTC-PKNCRSSYKLGKIVRRKIDA 120

Query: 125 VEELIGRGHFAVVAEKPPRAPVEERPIGKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGV 184
           V EL G+GHF  VA   P APV+ERP+GKT+GLD +  +V RC+ED   + IGLYG+GGV
Sbjct: 121 VTELKGKGHFDFVAHSLPCAPVDERPMGKTMGLDLMFEKVRRCLEDEQVRSIGLYGIGGV 180

Query: 185 GKTTLLKKLNNKFRDTEHDFDL 206
           GKTTLL+K+NN++    +DFD+
Sbjct: 181 GKTTLLQKINNEYFGKRNDFDV 202

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147838868|emb|CAN70333.1| hypothetical protein VITISV_011431 [Vitis vinifera]

 Score =  171 bits (433), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 95/202 (47%), Positives = 131/202 (64%), Gaps = 3/202 (1%)

Query: 5   INPIMDYLVCPLCGVISKHCGYVCGLTDSLNSLREAGRDLVNITRDVEARVDLAVEQRLR 64
           ++PI+D   C L    +K   Y+  L ++L SL  +  +L N++ DV  RV+   + + R
Sbjct: 4   VSPILDVATC-LWDCTAKRAVYIRKLEENLKSLESSTEELRNLSEDVMGRVEREEQLQSR 62

Query: 65  PTHEVNGWLESAKIMLREVDYILHRGDEEIQKTCLRKTCFPGSWSSRDKLGKEASEKIVA 124
            THEV+GWL + + M  EV+ IL  GD+EIQ+ CL  TC P +  S  KLGK    KI A
Sbjct: 63  RTHEVDGWLRAVQAMEAEVEEILQNGDQEIQQKCL-GTC-PKNCRSSYKLGKIVRRKIDA 120

Query: 125 VEELIGRGHFAVVAEKPPRAPVEERPIGKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGV 184
           V EL G+GHF  VA   P APV+ERP+GKT+GLD +  +V RC+ED   + IGLYG+GGV
Sbjct: 121 VTELKGKGHFDFVAHSLPCAPVDERPMGKTMGLDLMFEKVRRCLEDEQVRSIGLYGIGGV 180

Query: 185 GKTTLLKKLNNKFRDTEHDFDL 206
           GKTTLL+K+NN++    +DFD+
Sbjct: 181 GKTTLLQKINNEYFGKRNDFDV 202

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147859094|emb|CAN80410.1| hypothetical protein VITISV_018933 [Vitis vinifera]

 Score =  171 bits (433), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 96/202 (47%), Positives = 132/202 (65%), Gaps = 8/202 (3%)

Query: 11  YLVCPLCGVISKHCG-----YVCGLTDSLNSLREAGRDLVNITRDVEARVDLAVE-QRLR 64
           +L  P+  V  K+C      Y+  L  +LNSL+    +L N+++DV   V+   E Q+ R
Sbjct: 39  WLQLPIPNVTKKYCTAKRVVYIPELEKNLNSLKSLTEELSNLSKDVMVSVEREEELQQSR 98

Query: 65  PTHEVNGWLESAKIMLREVDYILHRGDEEIQKTCLRKTCFPGSWSSRDKLGKEASEKIVA 124
            THEV+GWL + ++M  EV+ IL  G +EIQ+ CL  TC P +  S  +LGK  S KI A
Sbjct: 99  RTHEVDGWLRAVQVMEAEVEEILQNGRQEIQQKCL-GTC-PKNCRSSYRLGKIVSRKIDA 156

Query: 125 VEELIGRGHFAVVAEKPPRAPVEERPIGKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGV 184
           V EL G+GHF  VA + P APV+ERP+GKTVGLD +  +V RC+ED   + IGLYG+GG 
Sbjct: 157 VTELKGKGHFDFVAHRLPCAPVDERPMGKTVGLDLMFEKVRRCLEDEQVRSIGLYGIGGA 216

Query: 185 GKTTLLKKLNNKFRDTEHDFDL 206
           GKTTLL+K+NN++  T +DFD+
Sbjct: 217 GKTTLLRKINNEYFGTRNDFDV 238

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297743218|emb|CBI36085.3| unnamed protein product [Vitis vinifera]

 Score =  169 bits (428), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 91/202 (45%), Positives = 138/202 (68%), Gaps = 2/202 (0%)

Query: 5   INPIMDYLVCPLCGVISKHCGYVCGLTDSLNSLREAGRDLVNITRDVEARVDLAVEQRLR 64
           ++PI+D +V  +    +KH  Y+  L ++++SLR A ++L N+  DV+ RV+L  ++++R
Sbjct: 4   VSPILD-VVTRVWDCTAKHAVYIRDLQENMDSLRNAMQELKNVHEDVKGRVELEEQRQMR 62

Query: 65  PTHEVNGWLESAKIMLREVDYILHRGDEEIQKTCLRKTCFPGSWSSRDKLGKEASEKIVA 124
            T+EV+GWL     M  +V+ IL +GD+EIQK C   TC P +  S  KLGK+A++K+ A
Sbjct: 63  RTNEVDGWLHGVLAMEIQVNEILEKGDQEIQKKC-PGTCCPRNCRSSYKLGKKATKKLGA 121

Query: 125 VEELIGRGHFAVVAEKPPRAPVEERPIGKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGV 184
           V EL  +G F VVA++ P+APV+ERP+ KTVGLD + + V R I+D    +IGLYGMGG 
Sbjct: 122 VIELRNKGRFDVVADRLPQAPVDERPMEKTVGLDLMFTGVCRYIQDEELGIIGLYGMGGA 181

Query: 185 GKTTLLKKLNNKFRDTEHDFDL 206
           GKTTL+ K+NN+F  +   F++
Sbjct: 182 GKTTLMTKVNNEFIRSSKSFEI 203

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	206
TAIR|locus:2036214	851	AT1G15890 [Arabidopsis thalian	0.917	0.222	0.3	1.2e-18
TAIR|locus:2170892	848	AT5G43730 [Arabidopsis thalian	0.907	0.220	0.308	8.2e-18
TAIR|locus:2166320	888	AT5G63020 [Arabidopsis thalian	0.946	0.219	0.287	1.1e-17
TAIR|locus:2170902	862	AT5G43740 [Arabidopsis thalian	0.912	0.218	0.289	1.6e-16
TAIR|locus:2153474	874	AT5G05400 [Arabidopsis thalian	0.951	0.224	0.297	1.7e-16
TAIR|locus:2034765	884	AT1G12290 [Arabidopsis thalian	0.864	0.201	0.309	4.5e-16
TAIR|locus:2008510	967	AT1G61190 "AT1G61190" [Arabido	0.936	0.199	0.286	6.6e-16
TAIR|locus:2034770	894	SUMM2 "AT1G12280" [Arabidopsis	0.776	0.178	0.312	1.6e-15
TAIR|locus:2201986	885	RFL1 "AT1G12210" [Arabidopsis	0.868	0.202	0.320	3.2e-15
TAIR|locus:2132741	892	AT4G10780 [Arabidopsis thalian	0.864	0.199	0.302	8.8e-15

TAIR|locus:2036214 AT1G15890 [Arabidopsis thaliana (taxid:3702)]

 Score = 236 (88.1 bits), Expect = 1.2e-18, P = 1.2e-18
 Identities = 57/190 (30%), Positives = 93/190 (48%)

Query:    17 CGVISKHCGYVCGLTDSLNSLREAGRDLVNITRDVEARVDLAVEQRLRPTHEVNGWLESA 76
             CG +     Y+  +  +L +L+   ++L     D+  RV +  ++ L+   +V GWL   
Sbjct:    19 CGCLFGDRNYILKMEANLEALQNTMQELEERRDDLLRRVVIEEDKGLQRLAQVQGWLSRV 78

Query:    77 KIMLREVDYILHRGDEEIQKTCLRKTCFPGSWSSRDKLGKEASEKIVAVEELIGRGHFAV 136
             K +  +V+ +L     + ++ CL   C     S R+  G    +K+  VE L+ +G F V
Sbjct:    79 KDVCSQVNDLLKAKSIQTERLCLCGYCSKNFISGRN-YGINVLKKLKHVEGLLAKGVFEV 137

Query:   137 VAEKPPRAPVEERPIGKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGXXXXXXXXXXX 196
             VAEK P   VE++ I  TVGLD+++   W  +     + +GLYGMGGVG           
Sbjct:   138 VAEKIPAPKVEKKHIQTTVGLDAMVGRAWNSLMKDERRTLGLYGMGGVGKTTLLASINNK 197

Query:   197 FRDTEHDFDL 206
             F +  + FDL
Sbjct:   198 FLEGMNGFDL 207

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2170892 AT5G43730 [Arabidopsis thaliana (taxid:3702)]

 Score = 228 (85.3 bits), Expect = 8.2e-18, P = 8.2e-18
 Identities = 59/191 (30%), Positives = 97/191 (50%)

Query:    17 CGVISKHCGYVCGLTDSLNSLREAGRDLVNITRDVEARVDLAVEQRLRPTHEVNGWLESA 76
             CG       Y+  +  +L++L++   +L N   D+ ARV +  ++ L+    VNGWL   
Sbjct:    18 CGCFLSDSNYIHLMESNLDALQKTMEELKNGRDDLLARVSIEEDKGLQRLALVNGWLSRV 77

Query:    77 KIMLREVDYILHRGDEEIQKTCLRKTCFPGSWSSRDKLGKEASEKIVAVEELIGRGHFAV 136
             +I+  E   +L     E  + CL   C     SS +  GK   + +  V+EL+ + +F V
Sbjct:    78 QIVESEFKDLLEAMSIETGRLCLFGYCSEDCISSYNYGGK-VMKNLEEVKELLSKKNFEV 136

Query:   137 VAEKP-PRAPVEERPIGKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGXXXXXXXXXX 195
             VA+K  P+A  E++ I  TVGLD+++   W  + D   + +GLYGMGG+G          
Sbjct:   137 VAQKIIPKA--EKKHIQTTVGLDTMVGIAWESLIDDEIRTLGLYGMGGIGKTTLLESLNN 194

Query:   196 XFRDTEHDFDL 206
              F + E +FD+
Sbjct:   195 KFVELESEFDV 205

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2166320 AT5G63020 [Arabidopsis thaliana (taxid:3702)]

 Score = 227 (85.0 bits), Expect = 1.1e-17, P = 1.1e-17
 Identities = 57/198 (28%), Positives = 98/198 (49%)

Query:    10 DYLVCPLCGVISKHCGYVCGLTDSLNSLREAGRDLVNITRDVEARVDLAVEQR-LRPTHE 68
             D L   +C  ++++  Y+ GL ++L +L+ A   +     D+  ++ L+ E+R L+    
Sbjct:    12 DQLTKNVCSCLNRNGDYIHGLEENLTALQRALEQIEQRREDLLRKI-LSEERRGLQRLSV 70

Query:    69 VNGWLESAKIMLREVDYILHRGDEEIQKTCLRKTCFPGSWSSRDKLGKEASEKIVAVEEL 128
             V GW+   + ++  V+ ++     ++Q+ CL   C     SS  + GK   + I  VE L
Sbjct:    71 VQGWVSKVEAIVPRVNELVRMRSVQVQRLCLCGFCSKNLVSSY-RYGKRVMKMIEEVEVL 129

Query:   129 IGRGHFAVVAEKPPRAPVEERPIGKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGXXX 188
               +G FAVVAE+   A VEERP    V +D ++   W  + +    ++GL+GMGGVG   
Sbjct:   130 RYQGDFAVVAERVDAARVEERPTRPMVAMDPMLESAWNRLMEDEIGILGLHGMGGVGKTT 189

Query:   189 XXXXXXXXFRDTEHDFDL 206
                     F     +FD+
Sbjct:   190 LLSHINNRFSRVGGEFDI 207

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2170902 AT5G43740 [Arabidopsis thaliana (taxid:3702)]

 Score = 216 (81.1 bits), Expect = 1.6e-16, P = 1.6e-16
 Identities = 55/190 (28%), Positives = 94/190 (49%)

Query:    17 CGVISKHCGYVCGLTDSLNSLREAGRDLVNITRDVEARVDLAVEQRLRPTHEVNGWLESA 76
             CG       Y+  +  +L++L++   +L N   D+  RV +  ++ L+   +VNGWL   
Sbjct:    17 CGCFLSDRNYIHMMESNLDALQKTMEELKNGRDDLLGRVSIEEDKGLQRLAQVNGWLSRV 76

Query:    77 KIMLREVDYILHRGDEEIQKTCLRKTCFPGSWSSRDKLGKEASEKIVAVEELIGRGHFAV 136
             +I+  E   +L     E  + CL   C     SS +  G++ S+ +  V+EL+ +  F +
Sbjct:    77 QIVESEFKDLLEAMSIETGRLCLLGYCSEDCISSYN-YGEKVSKMLEEVKELLSKKDFRM 135

Query:   137 VAEKPPRAPVEERPIGKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGXXXXXXXXXXX 196
             VA++     VE++ I  TVGLD ++   W  + +     +GLYGMGGVG           
Sbjct:   136 VAQEIIHK-VEKKLIQTTVGLDKLVEMAWSSLMNDEIGTLGLYGMGGVGKTTLLESLNNK 194

Query:   197 FRDTEHDFDL 206
             F + E +FD+
Sbjct:   195 FVELESEFDV 204

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2153474 AT5G05400 [Arabidopsis thaliana (taxid:3702)]

 Score = 216 (81.1 bits), Expect = 1.7e-16, P = 1.7e-16
 Identities = 59/198 (29%), Positives = 90/198 (45%)

Query:    10 DYLVCPLCGVISKHCGYVCGLTDSLNSLREAGRDLVNITRDVEARVDLAVEQRLRPTHEV 69
             D  V  L   +S++      L D + +L++  R L     D+  R+ +  ++ L    EV
Sbjct:    12 DQAVNNLTSCLSRNQNRFRNLVDHVAALKKTVRQLEARRDDLLKRIKVQEDRGLNLLDEV 71

Query:    70 NGWLESAKIMLREVDYILHRGDEEIQKTCLRKTCFPGSWSSRDKLGKEASEKIVAVEELI 129
               WL   +  + E   IL + DEEI   C  + C      S D   K    K+  VE L+
Sbjct:    72 QQWLSEVESRVCEAHDILSQSDEEIDNLCCGQYCSKRCKYSYD-YSKSVINKLQDVENLL 130

Query:   130 GRGHFAVVAEKPPRAPVEERPIGKT-VGLDSIISEVWRCIEDHNEKVIGLYGMGGVGXXX 188
              +G F  VA+K P   VEER   +  VG ++I+   W  + +    ++G+YGMGGVG   
Sbjct:   131 SKGVFDEVAQKGPIPKVEERLFHQEIVGQEAIVESTWNSMMEVGVGLLGIYGMGGVGKTT 190

Query:   189 XXXXXXXXFRDTEHDFDL 206
                     FR   +DFD+
Sbjct:   191 LLSQINNKFRTVSNDFDI 208

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0006826 "iron ion transport" evidence=RCA

GO:0010106 "cellular response to iron ion starvation" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

TAIR|locus:2034765 AT1G12290 [Arabidopsis thaliana (taxid:3702)]

 Score = 212 (79.7 bits), Expect = 4.5e-16, P = 4.5e-16
 Identities = 57/184 (30%), Positives = 90/184 (48%)

Query:    26 YVCGLTDSLNSLREAGRDLVNITRDVEARVDLAVEQRLRPTHEVNGWLESAKIMLREVDY 85
             Y+  + ++L SL EA  DL  +  D+  +V  A E  L+  H++  WL+  K +  + + 
Sbjct:    28 YIQNIKENLTSLEEAMEDLKALRDDLLRKVQTAEEGGLQRLHQIKVWLKRVKTIESQFND 87

Query:    86 ILHRGDEEIQKTCLRKTCFPGSWSSRDKL--GKEASEKIVAVEELIGRGHFAVVAEKPPR 143
             +      E+Q+ C    C  GS + R     G+     +  VE+L  +G F  VA    R
Sbjct:    88 LDSSRTVELQRLCC---CGVGSRNLRLSYDYGRRVFLMLNIVEDLKSKGIFEEVAHPATR 144

Query:   144 APVEERPIGKT-VGLDSIISEVWRCIEDHNEKVIGLYGMGGVGXXXXXXXXXXXFRDTEH 202
             A  EERP+  T VG ++I+ + W  + D   K++GLYGMGGVG           F DT+ 
Sbjct:   145 AVGEERPLQPTIVGQETILEKAWDHLMDDGTKIMGLYGMGGVGKTTLLTQINNRFCDTDD 204

Query:   203 DFDL 206
               ++
Sbjct:   205 GVEI 208

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

TAIR|locus:2008510 AT1G61190 "AT1G61190" [Arabidopsis thaliana (taxid:3702)]

 Score = 211 (79.3 bits), Expect = 6.6e-16, P = 6.6e-16
 Identities = 57/199 (28%), Positives = 92/199 (46%)

Query:     8 IMDYLVCPLCGVISKHCGYVCGLTDSLNSLREAGRDLVNITRDVEARVDLAVEQRLRPTH 67
             ++D ++  LCG      GY+  L  +L +L+    DL     +V+ +V     +  +   
Sbjct:    14 MLDRIIRCLCGK-----GYIRNLEKNLRALQREMEDLRATQHEVQNKVAREESRHQQRLE 68

Query:    68 EVNGWLESAKIMLREVDYILHRGDEEIQKTCLRKTCFPGSWSSRDKLGKEASEKIVAVEE 127
              V  WL+    +  E   +L     E+QK CL   C     SS  K GK     +  V +
Sbjct:    69 AVQVWLDRVNSIDIECKDLLSVSPVELQKLCLCGLCSKYVCSSY-KYGKRVFLLLEEVTK 127

Query:   128 LIGRGHFAVVAEKPPRAPVEERPIGKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGXX 187
             L   G+F  V++ PPR+ VEERP   T+G + ++ + W  + +    ++GL+GMGGVG  
Sbjct:   128 LKSEGNFDEVSQPPPRSEVEERPTQPTIGQEEMLKKAWNRLMEDGVGIMGLHGMGGVGKT 187

Query:   188 XXXXXXXXXFRDTEHDFDL 206
                      F +T   FD+
Sbjct:   188 TLFKKIHNKFAETGGTFDI 206

GO:0005575 "cellular_component" evidence=ND

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2034770 SUMM2 "AT1G12280" [Arabidopsis thaliana (taxid:3702)]

 Score = 207 (77.9 bits), Expect = 1.6e-15, P = 1.6e-15
 Identities = 51/163 (31%), Positives = 83/163 (50%)

Query:    25 GYVCGLTDSLNSLREAGRDLVNITRDVEARVDLAVEQRLRPT-HEVNGWLESAKIMLREV 83
             GY+C L+ ++ ++++    L     DV+ RVD+    R R    +V GWL +   +  + 
Sbjct:    27 GYICELSKNVVAMKKDMEVLKKKRDDVKRRVDIEEFTRRRERLSQVQGWLTNVSTVENKF 86

Query:    84 DYILHRGDEEIQKTCLRKTCFPGSWSSRDKLGKEASEKIVAVEELIGRGHFAVVAEKPPR 143
             + +L   D E+Q+ CL   C      S    GK     +  +E L  +G F  V    P 
Sbjct:    87 NELLTTNDAELQRLCLFGFCSKNVKMSY-LYGKRVVLMLKEIESLSSQGDFDTVTLATPI 145

Query:   144 APVEERPIGKT-VGLDSIISEVWRCIEDHNEKVIGLYGMGGVG 185
             A +EE PI  T VG ++++  VW  + +  ++++GLYGMGGVG
Sbjct:   146 ARIEEMPIQPTIVGQETMLERVWTRLTEDGDEIVGLYGMGGVG 188

GO:0006952 "defense response" evidence=IGI;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2201986 RFL1 "AT1G12210" [Arabidopsis thaliana (taxid:3702)]

 Score = 204 (76.9 bits), Expect = 3.2e-15, P = 3.2e-15
 Identities = 59/184 (32%), Positives = 89/184 (48%)

Query:    26 YVCGLTDSLNSLREAGRDLVNITRD-VEARVDLA-VEQRLRPTHEVNGWLESAKIMLREV 83
             Y+  L+++L SL++A   ++N  RD V+ R++        R   +V  WL   + +  + 
Sbjct:    28 YIQNLSENLASLQKA-MGVLNAKRDDVQGRINREEFTGHRRRLAQVQVWLTRIQTIENQF 86

Query:    84 DYILHRGDEEIQKTCLRKTCFPGSWSSRDKLGKEASEKIVAVEELIGRGHFAVVAEKPPR 143
             + +L   + EIQ+ CL   C      S    GK     +  VE L  +G F +V E  P 
Sbjct:    87 NDLLSTCNAEIQRLCLCGFCSKNVKMSY-LYGKRVIVLLREVEGLSSQGVFDIVTEAAPI 145

Query:   144 APVEERPIGKT-VGLDSIISEVWRCIEDHNEKVIGLYGMGGVGXXXXXXXXXXXFRDTEH 202
             A VEE PI  T VG DS++ +VW C+ +    ++GLYGMGGVG           F     
Sbjct:   146 AEVEELPIQSTIVGQDSMLDKVWNCLMEDKVWIVGLYGMGGVGKTTLLTQINNKFSKLGG 205

Query:   203 DFDL 206
              FD+
Sbjct:   206 GFDV 209

GO:0005575 "cellular_component" evidence=ND

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0009617 "response to bacterium" evidence=ISS

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

TAIR|locus:2132741 AT4G10780 [Arabidopsis thaliana (taxid:3702)]

 Score = 200 (75.5 bits), Expect = 8.8e-15, P = 8.8e-15
 Identities = 55/182 (30%), Positives = 83/182 (45%)

Query:    26 YVCGLTDSLNSLREAGRDLVNITRDVEARVDLAVEQRLRPTHEVNGWLESAKIMLREVDY 85
             Y+  L D++ +L +A  DL     DV  RV +   + L    +V  WL+  +I+  +   
Sbjct:    28 YIHKLKDNIVALEKAIEDLTATRDDVLRRVQMEEGKGLERLQQVQVWLKRVEIIRNQFYD 87

Query:    86 ILHRGDEEIQKTCLRKTCFPGSWSSRDKLGKEASEKIVAVEELIGRGHFAVVAEKPPRAP 145
             +L   + EIQ+ C    C   + SS    G+     I  VE L   G F +VA   P+  
Sbjct:    88 LLSARNIEIQRLCFYSNCST-NLSSSYTYGQRVFLMIKEVENLNSNGFFEIVAAPAPK-- 144

Query:   146 VEERPIGKTV-GLDSIISEVWRCIEDHNEKVIGLYGMGGVGXXXXXXXXXXXFRDTEHDF 204
             +E RPI  T+ G ++I    W  + D     +GLYGMGGVG             DT++  
Sbjct:   145 LEMRPIQPTIMGRETIFQRAWNRLMDDGVGTMGLYGMGGVGKTTLLTQIHNTLHDTKNGV 204

Query:   205 DL 206
             D+
Sbjct:   205 DI 206

GO:0000166 "nucleotide binding" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00034334001 SubName- Full=Chromosome chr9 scaffold_7, whole genome shotgun sequence; (2485 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	206
pfam00931	285	pfam00931, NB-ARC, NB-ARC domain	1e-06

>gnl|CDD|216202 pfam00931, NB-ARC, NB-ARC domain

 Score = 47.3 bits (113), Expect = 1e-06
 Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 1/35 (2%)

Query: 172 NEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHDFDL 206
           N  V+G+ GMGGVGKTTL K++ N        FD 
Sbjct: 18  NLGVVGIVGMGGVGKTTLAKQIYNDDS-VGGHFDS 51

Length = 285

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	206
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.85
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.86
COG0488	530	Uup ATPase components of ABC transporters with dup	98.45
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	98.4
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	98.31
COG3842	352	PotA ABC-type spermidine/putrescine transport syst	98.26
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	98.25
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	98.24
KOG0927	614	consensus Predicted transporter (ABC superfamily)	98.22
PF05496	233	RuvB_N: Holliday junction DNA helicase ruvB N-term	98.21
PRK13543	214	cytochrome c biogenesis protein CcmA; Provisional	98.16
COG4559	259	ABC-type hemin transport system, ATPase component	98.15
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	98.14
PRK11247	257	ssuB aliphatic sulfonates transport ATP-binding su	98.12
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	98.12
COG1134	249	TagH ABC-type polysaccharide/polyol phosphate tran	98.11
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	98.11
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	98.11
PRK10247	225	putative ABC transporter ATP-binding protein YbbL;	98.11
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	98.11
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	98.11
COG1131	293	CcmA ABC-type multidrug transport system, ATPase c	98.07
COG4987	573	CydC ABC-type transport system involved in cytochr	98.06
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	98.05
cd03267	236	ABC_NatA_like Similar in sequence to NatA, this is	98.04
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	98.03
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	98.02
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	98.02
PRK13638	271	cbiO cobalt transporter ATP-binding subunit; Provi	98.02
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	98.0
PRK13540	200	cytochrome c biogenesis protein CcmA; Provisional	98.0
cd03294	269	ABC_Pro_Gly_Bertaine This family comprises the gly	98.0
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	98.0
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	98.0
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	98.0
PRK11264	250	putative amino-acid ABC transporter ATP-binding pr	97.99
TIGR02903	615	spore_lon_C ATP-dependent protease, Lon family. Me	97.99
PRK13536	340	nodulation factor exporter subunit NodI; Provision	97.99
TIGR01288	303	nodI ATP-binding ABC transporter family nodulation	97.99
PRK11248	255	tauB taurine transporter ATP-binding subunit; Prov	97.99
COG2274	709	SunT ABC-type bacteriocin/lantibiotic exporters, c	97.99
COG4555	245	NatA ABC-type Na+ transport system, ATPase compone	97.99
PRK13538	204	cytochrome c biogenesis protein CcmA; Provisional	97.98
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	97.98
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	97.98
COG0410	237	LivF ABC-type branched-chain amino acid transport	97.98
PRK13537	306	nodulation ABC transporter NodI; Provisional	97.98
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	97.98
PRK10575	265	iron-hydroxamate transporter ATP-binding subunit;	97.98
PRK10584	228	putative ABC transporter ATP-binding protein YbbA;	97.98
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	97.98
PRK14242	253	phosphate transporter ATP-binding protein; Provisi	97.98
PRK11701	258	phnK phosphonate C-P lyase system protein PhnK; Pr	97.97
PRK09544	251	znuC high-affinity zinc transporter ATPase; Review	97.97
PRK11124	242	artP arginine transporter ATP-binding subunit; Pro	97.96
COG1127	263	Ttg2A ABC-type transport system involved in resist	97.96
smart00763	361	AAA_PrkA PrkA AAA domain. This is a family of PrkA	97.96
PRK14250	241	phosphate ABC transporter ATP-binding protein; Pro	97.96
COG4107	258	PhnK ABC-type phosphonate transport system, ATPase	97.96
PRK11831	269	putative ABC transporter ATP-binding protein YrbF;	97.95
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	97.95
PRK13631	320	cbiO cobalt transporter ATP-binding subunit; Provi	97.94
PRK13548	258	hmuV hemin importer ATP-binding subunit; Provision	97.94
PRK13539	207	cytochrome c biogenesis protein CcmA; Provisional	97.94
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	97.93
KOG0066	807	consensus eIF2-interacting protein ABC50 (ABC supe	97.93
PRK10895	241	lipopolysaccharide ABC transporter ATP-binding pro	97.93
COG3638	258	ABC-type phosphate/phosphonate transport system, A	97.92
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	97.92
TIGR02323	253	CP_lyasePhnK phosphonate C-P lyase system protein	97.92
cd03220	224	ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo	97.92
TIGR03873	256	F420-0_ABC_ATP proposed F420-0 ABC transporter, AT	97.91
TIGR02324	224	CP_lyasePhnL phosphonate C-P lyase system protein	97.9
PRK10938	490	putative molybdenum transport ATP-binding protein	97.9
cd03295	242	ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin	97.9
PRK11300	255	livG leucine/isoleucine/valine transporter ATP-bin	97.89
COG2884	223	FtsE Predicted ATPase involved in cell division [C	97.89
PRK11147	635	ABC transporter ATPase component; Reviewed	97.89
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	97.89
TIGR03411	242	urea_trans_UrtD urea ABC transporter, ATP-binding	97.88
PRK09493	240	glnQ glutamine ABC transporter ATP-binding protein	97.88
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	97.88
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	97.88
PRK10908	222	cell division protein FtsE; Provisional	97.87
PRK11614	237	livF leucine/isoleucine/valine transporter ATP-bin	97.87
cd03228	171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	97.87
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	97.87
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	97.87
PRK09270	229	nucleoside triphosphate hydrolase domain-containin	97.87
PRK14246	257	phosphate ABC transporter ATP-binding protein; Pro	97.87
cd03246	173	ABCC_Protease_Secretion This family represents the	97.86
TIGR00972	247	3a0107s01c2 phosphate ABC transporter, ATP-binding	97.86
cd03233	202	ABC_PDR_domain1 The pleiotropic drug resistance (P	97.86
COG4167	267	SapF ABC-type antimicrobial peptide transport syst	97.86
COG4618	580	ArpD ABC-type protease/lipase transport system, AT	97.86
PRK11147	635	ABC transporter ATPase component; Reviewed	97.86
PRK13649	280	cbiO cobalt transporter ATP-binding subunit; Provi	97.86
cd03216	163	ABC_Carb_Monos_I This family represents the domain	97.86
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	97.85
COG0488	530	Uup ATPase components of ABC transporters with dup	97.85
PRK15112	267	antimicrobial peptide ABC system ATP-binding prote	97.85
PRK13636	283	cbiO cobalt transporter ATP-binding subunit; Provi	97.85
PRK10744	260	pstB phosphate transporter ATP-binding protein; Pr	97.85
cd03244	221	ABCC_MRP_domain2 Domain 2 of the ABC subfamily C.	97.84
PRK10619	257	histidine/lysine/arginine/ornithine transporter su	97.84
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	97.84
PRK13641	287	cbiO cobalt transporter ATP-binding subunit; Provi	97.84
TIGR02769	265	nickel_nikE nickel import ATP-binding protein NikE	97.84
PRK14248	268	phosphate ABC transporter ATP-binding protein; Pro	97.84
cd03254	229	ABCC_Glucan_exporter_like Glucan exporter ATP-bind	97.84
PRK10253	265	iron-enterobactin transporter ATP-binding protein;	97.84
PRK11231	255	fecE iron-dicitrate transporter ATP-binding subuni	97.84
COG2255	332	RuvB Holliday junction resolvasome, helicase subun	97.84
cd03290	218	ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec	97.84
cd03249	238	ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6)	97.83
cd03248	226	ABCC_TAP TAP, the Transporter Associated with Anti	97.83
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	97.82
cd03245	220	ABCC_bacteriocin_exporters ABC-type bacteriocin ex	97.82
PRK15064	530	ABC transporter ATP-binding protein; Provisional	97.82
PLN03073	718	ABC transporter F family; Provisional	97.82
PRK14273	254	phosphate ABC transporter ATP-binding protein; Pro	97.82
PRK13647	274	cbiO cobalt transporter ATP-binding subunit; Provi	97.82
PRK13342	413	recombination factor protein RarA; Reviewed	97.82
cd03251	234	ABCC_MsbA MsbA is an essential ABC transporter, cl	97.82
cd03252	237	ABCC_Hemolysin The ABC-transporter hemolysin B is	97.81
PRK15064	530	ABC transporter ATP-binding protein; Provisional	97.81
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	97.81
PRK13650	279	cbiO cobalt transporter ATP-binding subunit; Provi	97.8
PRK14238	271	phosphate transporter ATP-binding protein; Provisi	97.8
cd03250	204	ABCC_MRP_domain1 Domain 1 of the ABC subfamily C.	97.8
PF12061	402	DUF3542: Protein of unknown function (DUF3542); In	97.8
COG4619	223	ABC-type uncharacterized transport system, ATPase	97.8
PRK15056	272	manganese/iron transporter ATP-binding protein; Pr	97.79
PRK14259	269	phosphate ABC transporter ATP-binding protein; Pro	97.79
COG4133	209	CcmA ABC-type transport system involved in cytochr	97.79
TIGR02314	343	ABC_MetN D-methionine ABC transporter, ATP-binding	97.79
PRK13639	275	cbiO cobalt transporter ATP-binding subunit; Provi	97.79
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	97.77
PRK14267	253	phosphate ABC transporter ATP-binding protein; Pro	97.77
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	97.77
PRK13632	271	cbiO cobalt transporter ATP-binding subunit; Provi	97.77
COG0411	250	LivG ABC-type branched-chain amino acid transport	97.77
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	97.77
PRK13546	264	teichoic acids export protein ATP-binding subunit;	97.77
cd03369	207	ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty	97.76
PRK14245	250	phosphate ABC transporter ATP-binding protein; Pro	97.76
PRK09984	262	phosphonate/organophosphate ester transporter subu	97.76
cd03253	236	ABCC_ATM1_transporter ATM1 is an ABC transporter t	97.76
COG4608	268	AppF ABC-type oligopeptide transport system, ATPas	97.76
PRK11331	459	5-methylcytosine-specific restriction enzyme subun	97.76
PRK11432	351	fbpC ferric transporter ATP-binding subunit; Provi	97.76
PRK13652	277	cbiO cobalt transporter ATP-binding subunit; Provi	97.75
PRK14241	258	phosphate transporter ATP-binding protein; Provisi	97.75
PRK13645	289	cbiO cobalt transporter ATP-binding subunit; Provi	97.75
PRK13637	287	cbiO cobalt transporter ATP-binding subunit; Provi	97.75
PRK13644	274	cbiO cobalt transporter ATP-binding subunit; Provi	97.75
PRK10419	268	nikE nickel transporter ATP-binding protein NikE;	97.75
PRK13547	272	hmuV hemin importer ATP-binding subunit; Provision	97.75
PRK13646	286	cbiO cobalt transporter ATP-binding subunit; Provi	97.75
PRK13648	269	cbiO cobalt transporter ATP-binding subunit; Provi	97.74
PRK11153	343	metN DL-methionine transporter ATP-binding subunit	97.74
PRK14265	274	phosphate ABC transporter ATP-binding protein; Pro	97.74
cd03234	226	ABCG_White The White subfamily represents ABC tran	97.74
PRK14247	250	phosphate ABC transporter ATP-binding protein; Pro	97.74
cd03291	282	ABCC_CFTR1 The CFTR subfamily domain 1. The cystic	97.74
PRK13635	279	cbiO cobalt transporter ATP-binding subunit; Provi	97.73
PRK11000	369	maltose/maltodextrin transporter ATP-binding prote	97.73
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	97.73
cd03213	194	ABCG_EPDR ABCG transporters are involved in eye pi	97.73
PRK11176	582	lipid transporter ATP-binding/permease protein; Pr	97.73
PTZ00202	550	tuzin; Provisional	97.73
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	97.73
PRK14274	259	phosphate ABC transporter ATP-binding protein; Pro	97.73
PRK14253	249	phosphate ABC transporter ATP-binding protein; Pro	97.72
PRK13409	590	putative ATPase RIL; Provisional	97.72
PRK13651	305	cobalt transporter ATP-binding subunit; Provisiona	97.72
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	97.72
PRK13643	288	cbiO cobalt transporter ATP-binding subunit; Provi	97.72
PRK09580	248	sufC cysteine desulfurase ATPase component; Review	97.72
TIGR03522	301	GldA_ABC_ATP gliding motility-associated ABC trans	97.72
PRK10418	254	nikD nickel transporter ATP-binding protein NikD;	97.71
PRK14235	267	phosphate transporter ATP-binding protein; Provisi	97.71
PRK00080	328	ruvB Holliday junction DNA helicase RuvB; Reviewed	97.71
PRK13634	290	cbiO cobalt transporter ATP-binding subunit; Provi	97.7
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	97.7
PRK14237	267	phosphate transporter ATP-binding protein; Provisi	97.7
COG2256	436	MGS1 ATPase related to the helicase subunit of the	97.7
TIGR03265	353	PhnT2 putative 2-aminoethylphosphonate ABC transpo	97.7
CHL00131	252	ycf16 sulfate ABC transporter protein; Validated	97.69
TIGR02868	529	CydC thiol reductant ABC exporter, CydC subunit. T	97.69
TIGR03797	686	NHPM_micro_ABC2 NHPM bacteriocin system ABC transp	97.69
PRK14239	252	phosphate transporter ATP-binding protein; Provisi	97.69
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	97.69
PRK09452	375	potA putrescine/spermidine ABC transporter ATPase	97.69
PRK09536	402	btuD corrinoid ABC transporter ATPase; Reviewed	97.69
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	97.68
PRK14272	252	phosphate ABC transporter ATP-binding protein; Pro	97.68
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	97.68
TIGR02982	220	heterocyst_DevA ABC exporter ATP-binding subunit,	97.68
PRK11650	356	ugpC glycerol-3-phosphate transporter ATP-binding	97.68
TIGR02928	365	orc1/cdc6 family replication initiation protein. M	97.68
PRK14243	264	phosphate transporter ATP-binding protein; Provisi	97.67
PRK12402	337	replication factor C small subunit 2; Reviewed	97.67
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	97.67
PRK14262	250	phosphate ABC transporter ATP-binding protein; Pro	97.67
PRK14255	252	phosphate ABC transporter ATP-binding protein; Pro	97.67
cd00267	157	ABC_ATPase ABC (ATP-binding cassette) transporter	97.67
COG4152	300	ABC-type uncharacterized transport system, ATPase	97.66
PRK11308	327	dppF dipeptide transporter ATP-binding subunit; Pr	97.66
PRK13633	280	cobalt transporter ATP-binding subunit; Provisiona	97.66
PRK14240	250	phosphate transporter ATP-binding protein; Provisi	97.66
PRK14270	251	phosphate ABC transporter ATP-binding protein; Pro	97.66
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	97.66
PRK14254	285	phosphate ABC transporter ATP-binding protein; Pro	97.66
PRK14261	253	phosphate ABC transporter ATP-binding protein; Pro	97.65
PRK14256	252	phosphate ABC transporter ATP-binding protein; Pro	97.65
TIGR00554	290	panK_bact pantothenate kinase, bacterial type. Sho	97.65
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	97.64
COG4586	325	ABC-type uncharacterized transport system, ATPase	97.64
PRK10851	353	sulfate/thiosulfate transporter subunit; Provision	97.63
TIGR03258	362	PhnT 2-aminoethylphosphonate ABC transport system,	97.63
PRK14251	251	phosphate ABC transporter ATP-binding protein; Pro	97.63
TIGR01193	708	bacteriocin_ABC ABC-type bacteriocin transporter.	97.62
COG4604	252	CeuD ABC-type enterochelin transport system, ATPas	97.62
COG1132	567	MdlB ABC-type multidrug transport system, ATPase a	97.62
PRK14269	246	phosphate ABC transporter ATP-binding protein; Pro	97.62
PRK10522	547	multidrug transporter membrane component/ATP-bindi	97.62
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	97.62
PRK14252	265	phosphate ABC transporter ATP-binding protein; Pro	97.61
PRK14271	276	phosphate ABC transporter ATP-binding protein; Pro	97.61
PRK14258	261	phosphate ABC transporter ATP-binding protein; Pro	97.61
PLN03025	319	replication factor C subunit; Provisional	97.61
PRK14236	272	phosphate transporter ATP-binding protein; Provisi	97.61
COG1118	345	CysA ABC-type sulfate/molybdate transport systems,	97.61
PRK13640	282	cbiO cobalt transporter ATP-binding subunit; Provi	97.61
PRK09376	416	rho transcription termination factor Rho; Provisio	97.61
PRK13642	277	cbiO cobalt transporter ATP-binding subunit; Provi	97.61
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	97.6
COG1119	257	ModF ABC-type molybdenum transport system, ATPase	97.6
PRK14268	258	phosphate ABC transporter ATP-binding protein; Pro	97.6
PRK15079	331	oligopeptide ABC transporter ATP-binding protein O	97.59
PRK00411	394	cdc6 cell division control protein 6; Reviewed	97.59
PRK14275	286	phosphate ABC transporter ATP-binding protein; Pro	97.59
cd03288	257	ABCC_SUR2 The SUR domain 2. The sulfonylurea recep	97.58
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	97.58
COG4525	259	TauB ABC-type taurine transport system, ATPase com	97.58
PRK14260	259	phosphate ABC transporter ATP-binding protein; Pro	97.58
PRK00440	319	rfc replication factor C small subunit; Reviewed	97.58
PRK10789	569	putative multidrug transporter membrane\ATP-bindin	97.57
PRK10938	490	putative molybdenum transport ATP-binding protein	97.57
PRK14263	261	phosphate ABC transporter ATP-binding protein; Pro	97.56
PRK14264	305	phosphate ABC transporter ATP-binding protein; Pro	97.55
PRK14249	251	phosphate ABC transporter ATP-binding protein; Pro	97.55
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	97.55
PRK10261	623	glutathione transporter ATP-binding protein; Provi	97.55
PRK13409	590	putative ATPase RIL; Provisional	97.55
TIGR00150	133	HI0065_YjeE ATPase, YjeE family. Members of this f	97.55
TIGR01842	544	type_I_sec_PrtD type I secretion system ABC transp	97.54
cd03232	192	ABC_PDR_domain2 The pleiotropic drug resistance-li	97.54
COG1245	591	Predicted ATPase, RNase L inhibitor (RLI) homolog	97.53
PRK04195	482	replication factor C large subunit; Provisional	97.53
COG1123	539	ATPase components of various ABC-type transport sy	97.53
PRK10261	623	glutathione transporter ATP-binding protein; Provi	97.53
PLN03073	718	ABC transporter F family; Provisional	97.52
PRK11022	326	dppD dipeptide transporter ATP-binding subunit; Pr	97.52
PRK14962	472	DNA polymerase III subunits gamma and tau; Provisi	97.52
KOG0058	716	consensus Peptide exporter, ABC superfamily [Intra	97.52
PRK14244	251	phosphate ABC transporter ATP-binding protein; Pro	97.51
PRK15455	644	PrkA family serine protein kinase; Provisional	97.51
TIGR03015	269	pepcterm_ATPase putative secretion ATPase, PEP-CTE	97.5
COG4778	235	PhnL ABC-type phosphonate transport system, ATPase	97.5
cd02019	69	NK Nucleoside/nucleotide kinase (NK) is a protein	97.5
TIGR03345	852	VI_ClpV1 type VI secretion ATPase, ClpV1 family. M	97.49
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	97.49
COG1135	339	AbcC ABC-type metal ion transport system, ATPase c	97.49
COG4598	256	HisP ABC-type histidine transport system, ATPase c	97.48
TIGR00958	711	3a01208 Conjugate Transporter-2 (CT2) Family prote	97.48
PRK15093	330	antimicrobial peptide ABC transporter ATP-binding	97.48
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	97.47
cd03289	275	ABCC_CFTR2 The CFTR subfamily domain 2. The cystic	97.47
COG0466	782	Lon ATP-dependent Lon protease, bacterial type [Po	97.47
CHL00095	821	clpC Clp protease ATP binding subunit	97.47
KOG2028	554	consensus ATPase related to the helicase subunit o	97.46
PHA02544	316	44 clamp loader, small subunit; Provisional	97.44
TIGR03796	710	NHPM_micro_ABC1 NHPM bacteriocin system ABC transp	97.44
PRK11607	377	potG putrescine transporter ATP-binding subunit; P	97.43
TIGR02639	731	ClpA ATP-dependent Clp protease ATP-binding subuni	97.43
PRK14961	363	DNA polymerase III subunits gamma and tau; Provisi	97.43
TIGR02857	529	CydD thiol reductant ABC exporter, CydD subunit. U	97.43
TIGR03420	226	DnaA_homol_Hda DnaA regulatory inactivator Hda. Me	97.42
PRK11160	574	cysteine/glutathione ABC transporter membrane/ATP-	97.42
COG1122	235	CbiO ABC-type cobalt transport system, ATPase comp	97.42
PRK13545	549	tagH teichoic acids export protein ATP-binding sub	97.41
PRK09473	330	oppD oligopeptide transporter ATP-binding componen	97.4
PRK14266	250	phosphate ABC transporter ATP-binding protein; Pro	97.4
COG1129	500	MglA ABC-type sugar transport system, ATPase compo	97.39
TIGR01846	694	type_I_sec_HlyB type I secretion system ABC transp	97.39
TIGR03375	694	type_I_sec_LssB type I secretion system ATPase, Ls	97.38
TIGR02204	576	MsbA_rel ABC transporter, permease/ATP-binding pro	97.38
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	97.38
PRK13657	588	cyclic beta-1,2-glucan ABC transporter; Provisiona	97.37
PRK13341	725	recombination factor protein RarA/unknown domain f	97.37
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	97.37
PRK10865	857	protein disaggregation chaperone; Provisional	97.36
PF03193	161	DUF258: Protein of unknown function, DUF258; Inter	97.36
TIGR01192	585	chvA glucan exporter ATP-binding protein. This mod	97.34
PRK10790	592	putative multidrug transporter membrane\ATP-bindin	97.33
PRK10463	290	hydrogenase nickel incorporation protein HypB; Pro	97.33
COG0396	251	sufC Cysteine desulfurase activator ATPase [Posttr	97.32
TIGR02881	261	spore_V_K stage V sporulation protein K. Members o	97.32
PRK11174	588	cysteine/glutathione ABC transporter membrane/ATP-	97.32
TIGR02203	571	MsbA_lipidA lipid A export permease/ATP-binding pr	97.31
PRK13531	498	regulatory ATPase RavA; Provisional	97.3
KOG0056	790	consensus Heavy metal exporter HMT1, ABC superfami	97.3
KOG2004	906	consensus Mitochondrial ATP-dependent protease PIM	97.3
TIGR01194	555	cyc_pep_trnsptr cyclic peptide transporter. This m	97.3
cd03279	213	ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex	97.28
KOG0057	591	consensus Mitochondrial Fe/S cluster exporter, ABC	97.27
COG1101	263	PhnK ABC-type uncharacterized transport system, AT	97.27
TIGR00954	659	3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA	97.26
PRK10787	784	DNA-binding ATP-dependent protease La; Provisional	97.26
PF13555	62	AAA_29: P-loop containing region of AAA domain	97.25
PRK14956	484	DNA polymerase III subunits gamma and tau; Provisi	97.25
TIGR03346	852	chaperone_ClpB ATP-dependent chaperone ClpB. Membe	97.24
COG3845	501	ABC-type uncharacterized transport systems, ATPase	97.23
PRK14955	397	DNA polymerase III subunits gamma and tau; Provisi	97.23
COG4988	559	CydD ABC-type transport system involved in cytochr	97.23
PLN02796	347	D-glycerate 3-kinase	97.23
TIGR01242	364	26Sp45 26S proteasome subunit P45 family. Many pro	97.19
PRK10416	318	signal recognition particle-docking protein FtsY;	97.18
PRK14957	546	DNA polymerase III subunits gamma and tau; Provisi	97.18
PRK08084	235	DNA replication initiation factor; Provisional	97.17
KOG0991	333	consensus Replication factor C, subunit RFC2 [Repl	97.16
PRK06995	484	flhF flagellar biosynthesis regulator FlhF; Valida	97.15
PLN03211	659	ABC transporter G-25; Provisional	97.15
TIGR03238	504	dnd_assoc_3 dnd system-associated protein 3. cereu	97.14
PRK08727	233	hypothetical protein; Validated	97.14
PRK14257	329	phosphate ABC transporter ATP-binding protein; Pro	97.13
PRK14963	504	DNA polymerase III subunits gamma and tau; Provisi	97.13
TIGR00767	415	rho transcription termination factor Rho. Members	97.12
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	97.11
) proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor" target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF06309">PF06309	127	Torsin: Torsin; InterPro: IPR010448 This family co	97.11
PRK01889	356	GTPase RsgA; Reviewed	97.11
TIGR02858	270	spore_III_AA stage III sporulation protein AA. Mem	97.09
CHL00081	350	chlI Mg-protoporyphyrin IX chelatase	97.09
PRK14949	944	DNA polymerase III subunits gamma and tau; Provisi	97.09
PRK05896	605	DNA polymerase III subunits gamma and tau; Validat	97.05
PRK03992	389	proteasome-activating nucleotidase; Provisional	97.05
PRK14964	491	DNA polymerase III subunits gamma and tau; Provisi	97.04
PRK14721	420	flhF flagellar biosynthesis regulator FlhF; Provis	97.04
cd03280	200	ABC_MutS2 MutS2 homologs in bacteria and eukaryote	97.04
PLN02318	656	phosphoribulokinase/uridine kinase	97.03
PRK10536	262	hypothetical protein; Provisional	97.03
PRK09087	226	hypothetical protein; Validated	97.02
PRK14970	367	DNA polymerase III subunits gamma and tau; Provisi	97.02
PRK11889	436	flhF flagellar biosynthesis regulator FlhF; Provis	97.02
cd03243	202	ABC_MutS_homologs The MutS protein initiates DNA m	97.01
PRK08903	227	DnaA regulatory inactivator Hda; Validated	97.01
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	97.01
PRK14958	509	DNA polymerase III subunits gamma and tau; Provisi	97.01
TIGR03499	282	FlhF flagellar biosynthetic protein FlhF.	96.99
PRK14951	618	DNA polymerase III subunits gamma and tau; Provisi	96.99
PRK14960	702	DNA polymerase III subunits gamma and tau; Provisi	96.99
TIGR02902	531	spore_lonB ATP-dependent protease LonB. Members of	96.98
PRK11034	758	clpA ATP-dependent Clp protease ATP-binding subuni	96.98
PRK06645	507	DNA polymerase III subunits gamma and tau; Validat	96.98
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	96.97
TIGR00602	637	rad24 checkpoint protein rad24. This family is bas	96.97
TIGR02397	355	dnaX_nterm DNA polymerase III, subunit gamma and t	96.95
PRK00098	298	GTPase RsgA; Reviewed	96.95
PF02367	123	UPF0079: Uncharacterised P-loop hydrolase UPF0079;	96.94
PRK08099	399	bifunctional DNA-binding transcriptional repressor	96.94
COG4181	228	Predicted ABC-type transport system involved in ly	96.92
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	96.91
PLN03046	460	D-glycerate 3-kinase; Provisional	96.91
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	96.91
PRK06893	229	DNA replication initiation factor; Validated	96.9
PRK12323	700	DNA polymerase III subunits gamma and tau; Provisi	96.9
COG0444	316	DppD ABC-type dipeptide/oligopeptide/nickel transp	96.9
PRK14954	620	DNA polymerase III subunits gamma and tau; Provisi	96.88
CHL00181	287	cbbX CbbX; Provisional	96.88
PLN03232	1495	ABC transporter C family member; Provisional	96.87
PRK09183	259	transposase/IS protein; Provisional	96.87
PLN02165	334	adenylate isopentenyltransferase	96.86
PTZ00454	398	26S protease regulatory subunit 6B-like protein; P	96.86
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	96.86
PRK14969	527	DNA polymerase III subunits gamma and tau; Provisi	96.86
PLN02348	395	phosphoribulokinase	96.85
KOG0927	614	consensus Predicted transporter (ABC superfamily)	96.85
PRK09435	332	membrane ATPase/protein kinase; Provisional	96.84
PRK14952	584	DNA polymerase III subunits gamma and tau; Provisi	96.83
PRK08691	709	DNA polymerase III subunits gamma and tau; Validat	96.83
PRK06620	214	hypothetical protein; Validated	96.82
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	96.82
PF08298	358	AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 Thi	96.82
PRK05439	311	pantothenate kinase; Provisional	96.81
PRK07994	647	DNA polymerase III subunits gamma and tau; Validat	96.81
COG1245	591	Predicted ATPase, RNase L inhibitor (RLI) homolog	96.8
PLN02200	234	adenylate kinase family protein	96.79
TIGR00390	441	hslU ATP-dependent protease HslVU, ATPase subunit.	96.79
PRK14974	336	cell division protein FtsY; Provisional	96.78
PLN03130	1622	ABC transporter C family member; Provisional	96.77
PRK06305	451	DNA polymerase III subunits gamma and tau; Validat	96.77
TIGR02788	308	VirB11 P-type DNA transfer ATPase VirB11. The VirB	96.77
PRK12727	559	flagellar biosynthesis regulator FlhF; Provisional	96.76
PTZ00361	438	26 proteosome regulatory subunit 4-like protein; P	96.76
PRK14950	585	DNA polymerase III subunits gamma and tau; Provisi	96.76
PRK05201	443	hslU ATP-dependent protease ATP-binding subunit Hs	96.76
PRK10535	648	macrolide transporter ATP-binding /permease protei	96.76
TIGR00763	775	lon ATP-dependent protease La. This protein is ind	96.75
TIGR00064	272	ftsY signal recognition particle-docking protein F	96.75
PRK07003	830	DNA polymerase III subunits gamma and tau; Validat	96.74
PRK13407	334	bchI magnesium chelatase subunit I; Provisional	96.73
PF03308	266	ArgK: ArgK protein; InterPro: IPR005129 Bacterial	96.72
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	96.72
PRK09111	598	DNA polymerase III subunits gamma and tau; Validat	96.72
PRK09112	351	DNA polymerase III subunit delta'; Validated	96.71
KOG0062	582	consensus ATPase component of ABC transporters wit	96.71
PRK09862	506	putative ATP-dependent protease; Provisional	96.7
cd03281	213	ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS	96.7
TIGR00635	305	ruvB Holliday junction DNA helicase, RuvB subunit.	96.69
TIGR02524	358	dot_icm_DotB Dot/Icm secretion system ATPase DotB.	96.66
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	96.65
COG5265	497	ATM1 ABC-type transport system involved in Fe-S cl	96.63
PTZ00243	1560	ABC transporter; Provisional	96.62
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	96.62
TIGR02782	299	TrbB_P P-type conjugative transfer ATPase TrbB. Th	96.62
PRK08154	309	anaerobic benzoate catabolism transcriptional regu	96.62
COG4136	213	ABC-type uncharacterized transport system, ATPase	96.62
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	96.6
PF13245	76	AAA_19: Part of AAA domain	96.6
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	96.59
PF05673	249	DUF815: Protein of unknown function (DUF815); Inte	96.59
PRK10646	153	ADP-binding protein; Provisional	96.59
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	96.59
PLN00020	413	ribulose bisphosphate carboxylase/oxygenase activa	96.59
PRK06835	329	DNA replication protein DnaC; Validated	96.58
TIGR03689	512	pup_AAA proteasome ATPase. In the Actinobacteria,	96.58
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	96.56
COG1703	323	ArgK Putative periplasmic protein kinase ArgK and	96.56
TIGR02880	284	cbbX_cfxQ probable Rubsico expression protein CbbX	96.54
PRK06002	450	fliI flagellum-specific ATP synthase; Validated	96.54
TIGR00955	617	3a01204 The Eye Pigment Precursor Transporter (EPP	96.53
TIGR00368	499	Mg chelatase-related protein. The N-terminal end m	96.53
PLN03140	1470	ABC transporter G family member; Provisional	96.52
TIGR01241	495	FtsH_fam ATP-dependent metalloprotease FtsH. HflB(	96.51
PF03215	519	Rad17: Rad17 cell cycle checkpoint protein	96.51
PRK12724	432	flagellar biosynthesis regulator FlhF; Provisional	96.5
PRK13477	512	bifunctional pantoate ligase/cytidylate kinase; Pr	96.5
PHA02244	383	ATPase-like protein	96.5
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	96.49
PRK07764	824	DNA polymerase III subunits gamma and tau; Validat	96.49
TIGR01650	327	PD_CobS cobaltochelatase, CobS subunit. This model	96.48
cd01129	264	PulE-GspE PulE/GspE The type II secretory pathway	96.48
TIGR01526	325	nadR_NMN_Atrans nicotinamide-nucleotide adenylyltr	96.48
PRK05342	412	clpX ATP-dependent protease ATP-binding subunit Cl	96.48
PRK14953	486	DNA polymerase III subunits gamma and tau; Provisi	96.47
PRK10865	857	protein disaggregation chaperone; Provisional	96.47
PRK04220	301	2-phosphoglycerate kinase; Provisional	96.47
PRK14965	576	DNA polymerase III subunits gamma and tau; Provisi	96.47
PRK05703	424	flhF flagellar biosynthesis regulator FlhF; Valida	96.47
COG0542	786	clpA ATP-binding subunits of Clp protease and DnaK	96.46
COG0714	329	MoxR-like ATPases [General function prediction onl	96.46
PRK06647	563	DNA polymerase III subunits gamma and tau; Validat	96.46
PTZ00243	1560	ABC transporter; Provisional	96.46
PRK06851	367	hypothetical protein; Provisional	96.46
PLN03232	1495	ABC transporter C family member; Provisional	96.46
KOG0733	802	consensus Nuclear AAA ATPase (VCP subfamily) [Post	96.45
PLN03130	1622	ABC transporter C family member; Provisional	96.45
PRK14489	366	putative bifunctional molybdopterin-guanine dinucl	96.44
PRK06526	254	transposase; Provisional	96.44
cd01853	249	Toc34_like Toc34-like (Translocon at the Outer-env	96.44
COG4615	546	PvdE ABC-type siderophore export system, fused ATP	96.43
COG1123	539	ATPase components of various ABC-type transport sy	96.41
PF14532	138	Sigma54_activ_2: Sigma-54 interaction domain; PDB:	96.4
PRK14723	767	flhF flagellar biosynthesis regulator FlhF; Provis	96.39
COG1137	243	YhbG ABC-type (unclassified) transport system, ATP	96.39
TIGR01425	429	SRP54_euk signal recognition particle protein SRP5	96.37
PRK12288	347	GTPase RsgA; Reviewed	96.37
PRK08451	535	DNA polymerase III subunits gamma and tau; Validat	96.37
TIGR00382	413	clpX endopeptidase Clp ATP-binding regulatory subu	96.36
PRK12726	407	flagellar biosynthesis regulator FlhF; Provisional	96.35
PRK12289	352	GTPase RsgA; Reviewed	96.34
PRK07471	365	DNA polymerase III subunit delta'; Validated	96.32
PRK12723	388	flagellar biosynthesis regulator FlhF; Provisional	96.32
TIGR01243	733	CDC48 AAA family ATPase, CDC48 subfamily. This sub	96.31
PRK05642	234	DNA replication initiation factor; Validated	96.31
KOG0055	1228	consensus Multidrug/pheromone exporter, ABC superf	96.31
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	96.31
PRK14948	620	DNA polymerase III subunits gamma and tau; Provisi	96.3
COG1222	406	RPT1 ATP-dependent 26S proteasome regulatory subun	96.3
PRK00771	437	signal recognition particle protein Srp54; Provisi	96.28
COG1419	407	FlhF Flagellar GTP-binding protein [Cell motility	96.27
TIGR00991	313	3a0901s02IAP34 GTP-binding protein (Chloroplast En	96.26
PF05659	147	RPW8: Arabidopsis broad-spectrum mildew resistance	96.26
PRK13851	344	type IV secretion system protein VirB11; Provision	96.25
PRK12377	248	putative replication protein; Provisional	96.22
KOG0734	752	consensus AAA+-type ATPase containing the peptidas	96.21
COG4674	249	Uncharacterized ABC-type transport system, ATPase	96.21
PRK11034	758	clpA ATP-dependent Clp protease ATP-binding subuni	96.2

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.85  E-value=1.3e-20  Score=168.64  Aligned_cols=192  Identities=30%  Similarity=0.463  Sum_probs=144.6

Q ss_pred             CCCccchhhhhhhhhHhhhhhhhccccccchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHH
Q 037945            1 MDSLINPIMDYLVCPLCGVISKHCGYVCGLTDSLNSLREAGRDLVNITRDVEARVDLAVEQRLRPTHEVNGWLESAKIML   80 (206)
Q Consensus         1 M~~~~s~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~ae~~~~~~~~~~~~wl~~l~~~~   80 (206)
                      |++++|..+..    +.+.+.+....+.+..+++..|++.|..|++++.++++.       +.. .....+|...+++..
T Consensus         1 ~~~~~s~~~~~----~~~~l~~~~~~~~~~~~~i~~Lk~~L~~l~~~l~d~~a~-------~~~-~~~~~~~~e~~~~~~   68 (889)
T KOG4658|consen    1 MGACVSFGVEK----LDQLLNRESECLDGKDNYILELKENLKALQSALEDLDAK-------RDD-LERRVNWEEDVGDLV   68 (889)
T ss_pred             CCeEEEEehhh----HHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhh-------cch-HHHHHHHHHHHHHHH
Confidence            56666654443    667888999999999999999999999999999996544       443 478999999999999


Q ss_pred             HHHHHHHhhhhHhhhh----------------hccCCccCCCCcccccchhHHHHHHHHHHHHHHhcCCcccccc-CCCC
Q 037945           81 REVDYILHRGDEEIQK----------------TCLRKTCFPGSWSSRDKLGKEASEKIVAVEELIGRGHFAVVAE-KPPR  143 (206)
Q Consensus        81 ~~~ed~ld~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~  143 (206)
                      |+++|+++.+..+...                -|+.++| ..++...+.+++++...++.++....+..|..... ..+.
T Consensus        69 ~~~e~~~~~~~v~~~~~~~~~~l~~~~~~~~~~c~~~~~-~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~~~~~  147 (889)
T KOG4658|consen   69 YLAEDIIWLFLVEEIERKANDLLSTRSVERQRLCLCGFC-SKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGESLDPR  147 (889)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHhhhhHHHHHHHhhhhhH-hHhhhhhHhHHHHHHHHHHHHHHhccccceecccccccch
Confidence            9999999998765322                1233444 34455557777888888888888776655544332 1122


Q ss_pred             CCccccCCCCc--cchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhc-CCCCCCcC
Q 037945          144 APVEERPIGKT--VGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFR-DTEHDFDL  206 (206)
Q Consensus       144 ~~~~~~~~~~~--~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~-~~~~~Fd~  206 (206)
                      +.....+....  +|.+..++++++.|.+++..++||+||||+||||||+.|+|+.. +. ++||.
T Consensus       148 ~~~e~~~~~~~~~VG~e~~~~kl~~~L~~d~~~iv~i~GMGGvGKTTL~~qi~N~~~~v~-~~Fd~  212 (889)
T KOG4658|consen  148 EKVETRPIQSESDVGLETMLEKLWNRLMEDDVGIVGIYGMGGVGKTTLARQIFNKFDEVG-NHFDG  212 (889)
T ss_pred             hhcccCCCCccccccHHHHHHHHHHHhccCCCCEEEEECCCcccHHHHHHHHhcccchhc-ccCce
Confidence            22222222222  99999999999999998879999999999999999999999988 65 99984

>PLN03210 Resistant to P

Probab=98.86  E-value=1.2e-08  Score=95.52  Aligned_cols=47  Identities=23%  Similarity=0.557  Sum_probs=40.9

Q ss_pred             CCccchHHHHHHHHHhhh--cCCCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945          152 GKTVGLDSIISEVWRCIE--DHNEKVIGLYGMGGVGKTTLLKKLNNKFR  198 (206)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~--~~~~~vI~IvG~~G~GKTTLa~~i~~~~~  198 (206)
                      ...+|++..++++..+|.  .++.++|+||||||+||||||+.+|+...
T Consensus       184 ~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~  232 (1153)
T PLN03210        184 EDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLS  232 (1153)
T ss_pred             ccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHHh
Confidence            458999999999988775  35788999999999999999999999764

syringae 6; Provisional

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=98.45  E-value=1.5e-07  Score=80.85  Aligned_cols=58  Identities=22%  Similarity=0.266  Sum_probs=42.9

Q ss_pred             CCccccCCCCccch-HHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          144 APVEERPIGKTVGL-DSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       144 ~~~~~~~~~~~~g~-~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      ..+.....+..|+. ...++++...+..++  .|+|+|+||+|||||++.|.+...+.+|.
T Consensus       320 ~vl~~~~~~~~y~~~~~l~~~~s~~i~~g~--riaiiG~NG~GKSTLlk~l~g~~~~~~G~  378 (530)
T COG0488         320 LVLEFENVSKGYDGGRLLLKDLSFRIDRGD--RIAIVGPNGAGKSTLLKLLAGELGPLSGT  378 (530)
T ss_pred             eeEEEeccccccCCCceeecCceEEecCCC--EEEEECCCCCCHHHHHHHHhhhcccCCce
Confidence            34444455555643 456777777777888  99999999999999999998877655443

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=98.40  E-value=6.3e-08  Score=75.52  Aligned_cols=50  Identities=26%  Similarity=0.393  Sum_probs=41.1

Q ss_pred             CCccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          152 GKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      +..||....++++...+..++  +++|+|+||+|||||.+.+++-..+.+|.
T Consensus         9 s~~y~~~~il~~ls~~i~~G~--i~~iiGpNG~GKSTLLk~l~g~l~p~~G~   58 (258)
T COG1120           9 SFGYGGKPILDDLSFSIPKGE--ITGILGPNGSGKSTLLKCLAGLLKPKSGE   58 (258)
T ss_pred             EEEECCeeEEecceEEecCCc--EEEEECCCCCCHHHHHHHHhccCCCCCCE
Confidence            345666667777887888888  99999999999999999999988776553

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=98.31  E-value=1.6e-07  Score=70.81  Aligned_cols=52  Identities=25%  Similarity=0.376  Sum_probs=43.7

Q ss_pred             CCCCccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          150 PIGKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       150 ~~~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      +..+.||....++.+...+..++  +++|+|++|+|||||.+.|..-..+++|.
T Consensus         7 ~l~K~fg~~~VLkgi~l~v~~Ge--vv~iiGpSGSGKSTlLRclN~LE~~~~G~   58 (240)
T COG1126           7 NLSKSFGDKEVLKGISLSVEKGE--VVVIIGPSGSGKSTLLRCLNGLEEPDSGS   58 (240)
T ss_pred             eeeEEeCCeEEecCcceeEcCCC--EEEEECCCCCCHHHHHHHHHCCcCCCCce
Confidence            34567787777888888888899  99999999999999999999887777664

>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=98.26  E-value=2.3e-07  Score=75.47  Aligned_cols=56  Identities=25%  Similarity=0.361  Sum_probs=47.0

Q ss_pred             ccccCCCCccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          146 VEERPIGKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       146 ~~~~~~~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      +.....++.||....++++...+..++  .+++.||+|||||||.++|.+...|++|.
T Consensus         6 l~i~~v~k~yg~~~av~~isl~i~~Ge--f~~lLGPSGcGKTTlLR~IAGfe~p~~G~   61 (352)
T COG3842           6 LEIRNVSKSFGDFTAVDDISLDIKKGE--FVTLLGPSGCGKTTLLRMIAGFEQPSSGE   61 (352)
T ss_pred             EEEEeeeeecCCeeEEecceeeecCCc--EEEEECCCCCCHHHHHHHHhCCCCCCCce
Confidence            344456677886667888888888898  99999999999999999999999888664

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=98.25  E-value=1.8e-07  Score=72.75  Aligned_cols=49  Identities=22%  Similarity=0.403  Sum_probs=39.0

Q ss_pred             CCccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCC
Q 037945          152 GKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEH  202 (206)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~  202 (206)
                      +..|+....+++|...+..++  +++|+||||+|||||+|.|.+-.++.+|
T Consensus        11 ~v~y~~~~vl~~i~l~v~~G~--~~~iiGPNGaGKSTLlK~iLGll~p~~G   59 (254)
T COG1121          11 TVSYGNRPVLEDISLSVEKGE--ITALIGPNGAGKSTLLKAILGLLKPSSG   59 (254)
T ss_pred             EEEECCEeeeeccEEEEcCCc--EEEEECCCCCCHHHHHHHHhCCCcCCcc
Confidence            344553247778877788887  9999999999999999999997766544

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.24  E-value=2.6e-07  Score=71.17  Aligned_cols=50  Identities=22%  Similarity=0.405  Sum_probs=40.7

Q ss_pred             CCccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          152 GKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      +..||....++++...+.+++  .++|+|++|||||||.+.|.+-..+.+|.
T Consensus        10 ~~~f~~~~vl~~i~L~v~~GE--fvsilGpSGcGKSTLLriiAGL~~p~~G~   59 (248)
T COG1116          10 SKSFGGVEVLEDINLSVEKGE--FVAILGPSGCGKSTLLRLIAGLEKPTSGE   59 (248)
T ss_pred             EEEeCceEEeccceeEECCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCce
Confidence            445555566777777778889  99999999999999999999988776553

>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]

Probab=98.22  E-value=6.8e-06  Score=69.55  Aligned_cols=60  Identities=22%  Similarity=0.240  Sum_probs=41.2

Q ss_pred             CCCCccccCCCCccchH-HHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          142 PRAPVEERPIGKTVGLD-SIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       142 ~~~~~~~~~~~~~~g~~-~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      |++.+...+++.-|..+ ..+.++..-+.-+.  .|++||+||+|||||.+.+|++..|..|+
T Consensus       386 p~pvi~~~nv~F~y~~~~~iy~~l~fgid~~s--rvAlVGPNG~GKsTLlKl~~gdl~p~~G~  446 (614)
T KOG0927|consen  386 PPPVIMVQNVSFGYSDNPMIYKKLNFGIDLDS--RVALVGPNGAGKSTLLKLITGDLQPTIGM  446 (614)
T ss_pred             CCCeEEEeccccCCCCcchhhhhhhcccCccc--ceeEecCCCCchhhhHHHHhhcccccccc
Confidence            34444444444433322 45555555555566  99999999999999999999999886554

>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair

Probab=98.21  E-value=3.9e-06  Score=64.04  Aligned_cols=49  Identities=22%  Similarity=0.377  Sum_probs=35.4

Q ss_pred             CCCCccchHHHHHHHHHhhh-----cCCCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945          150 PIGKTVGLDSIISEVWRCIE-----DHNEKVIGLYGMGGVGKTTLLKKLNNKFR  198 (206)
Q Consensus       150 ~~~~~~g~~~~~~~l~~~L~-----~~~~~vI~IvG~~G~GKTTLa~~i~~~~~  198 (206)
                      ....++|.+..++++.-.+.     .+.+.-+-+|||+|+||||||+.|.+...
T Consensus        22 ~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~   75 (233)
T PF05496_consen   22 SLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELG   75 (233)
T ss_dssp             SCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT
T ss_pred             CHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccC
Confidence            34668999988887665544     24567899999999999999999998764

Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.

>PRK13543 cytochrome c biogenesis protein CcmA; Provisional

Probab=98.16  E-value=4.5e-07  Score=69.51  Aligned_cols=50  Identities=18%  Similarity=0.221  Sum_probs=38.4

Q ss_pred             CCccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          152 GKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      +..++....++++...+..++  +++|+|++|+|||||++.+.+...+.+|.
T Consensus        18 ~~~~~~~~il~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~i~G~~~~~~G~   67 (214)
T PRK13543         18 AFSRNEEPVFGPLDFHVDAGE--ALLVQGDNGAGKTTLLRVLAGLLHVESGQ   67 (214)
T ss_pred             EEecCCceeeecceEEECCCC--EEEEEcCCCCCHHHHHHHHhCCCCCCCee
Confidence            333443345666666677788  99999999999999999999987776564

>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.15  E-value=7.1e-07  Score=67.20  Aligned_cols=47  Identities=23%  Similarity=0.383  Sum_probs=37.8

Q ss_pred             cchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          155 VGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       155 ~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      +.....++.+...+..++  +.+|+|+||.|||||.+.+.++..+.+|.
T Consensus        11 ~~Gr~ll~~vsl~~~pGe--v~ailGPNGAGKSTlLk~LsGel~p~~G~   57 (259)
T COG4559          11 LAGRRLLDGVSLDLRPGE--VLAILGPNGAGKSTLLKALSGELSPDSGE   57 (259)
T ss_pred             eecceeccCcceeccCCc--EEEEECCCCccHHHHHHHhhCccCCCCCe
Confidence            333446666777777788  99999999999999999999998876543

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=98.14  E-value=7.6e-07  Score=68.24  Aligned_cols=50  Identities=24%  Similarity=0.301  Sum_probs=39.1

Q ss_pred             CCccchHH----HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          152 GKTVGLDS----IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       152 ~~~~g~~~----~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      +..|+...    .++++...+..++  +++|+|.+|+|||||++.+.+-.++.+|+
T Consensus        10 ~~~y~~~~~~~~~l~~VS~~i~~Ge--~lgivGeSGsGKSTL~r~l~Gl~~p~~G~   63 (252)
T COG1124          10 SIVYGGGKFAFHALNNVSLEIERGE--TLGIVGESGSGKSTLARLLAGLEKPSSGS   63 (252)
T ss_pred             EEEecCCcchhhhhcceeEEecCCC--EEEEEcCCCCCHHHHHHHHhcccCCCCce
Confidence            44555444    6666666677788  99999999999999999999887776554

>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional

Probab=98.12  E-value=4e-07  Score=71.77  Aligned_cols=51  Identities=22%  Similarity=0.349  Sum_probs=38.6

Q ss_pred             CCCccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          151 IGKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       151 ~~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      ....|+....++++...+..++  +++|+|++|+|||||++.|.+...+.+|.
T Consensus        18 l~~~~~~~~il~~isl~i~~Ge--~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~   68 (257)
T PRK11247         18 VSKRYGERTVLNQLDLHIPAGQ--FVAVVGRSGCGKSTLLRLLAGLETPSAGE   68 (257)
T ss_pred             EEEEECCcceeeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCeE
Confidence            3344554445666666666788  99999999999999999999987766554

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=98.12  E-value=6.8e-06  Score=58.08  Aligned_cols=42  Identities=33%  Similarity=0.494  Sum_probs=35.6

Q ss_pred             chHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          156 GLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       156 g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      |++..+..+...+.......+.|+|++|+|||||++.+++..
T Consensus         2 ~~~~~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~   43 (151)
T cd00009           2 GQEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANEL   43 (151)
T ss_pred             chHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence            567778888888877555689999999999999999999875

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]

Probab=98.11  E-value=9.9e-07  Score=67.68  Aligned_cols=42  Identities=26%  Similarity=0.434  Sum_probs=35.5

Q ss_pred             HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      .++++...+.+++  .|+|+|.||+|||||.+.|.+-.+|++|.
T Consensus        42 aL~disf~i~~Ge--~vGiiG~NGaGKSTLlkliaGi~~Pt~G~   83 (249)
T COG1134          42 ALKDISFEIYKGE--RVGIIGHNGAGKSTLLKLIAGIYKPTSGK   83 (249)
T ss_pred             EecCceEEEeCCC--EEEEECCCCCcHHHHHHHHhCccCCCCce
Confidence            4455666677788  99999999999999999999999887664

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=98.11  E-value=5e-07  Score=69.00  Aligned_cols=42  Identities=26%  Similarity=0.406  Sum_probs=33.2

Q ss_pred             HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      .++++...+..++  +++|+|++|+|||||++.|.+...+.+|.
T Consensus        16 il~~vs~~i~~G~--~~~l~G~nGsGKSTLl~~l~G~~~~~~G~   57 (211)
T cd03225          16 ALDDISLTIKKGE--FVLIVGPNGSGKSTLLRLLNGLLGPTSGE   57 (211)
T ss_pred             eecceEEEEcCCc--EEEEECCCCCCHHHHHHHHhcCCCCCCce
Confidence            3444555555677  99999999999999999999987766554

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=98.11  E-value=5.8e-07  Score=69.10  Aligned_cols=42  Identities=31%  Similarity=0.479  Sum_probs=34.4

Q ss_pred             HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      .++++...+..++  +++|+|++|+|||||++.+++-..+.+|+
T Consensus        17 il~~is~~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~   58 (220)
T cd03263          17 AVDDLSLNVYKGE--IFGLLGHNGAGKTTTLKMLTGELRPTSGT   58 (220)
T ss_pred             eecceEEEEcCCc--EEEEECCCCCCHHHHHHHHhCCCCCCCcE
Confidence            4556666666788  99999999999999999999987766554

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional

Probab=98.11  E-value=6.8e-07  Score=69.05  Aligned_cols=48  Identities=23%  Similarity=0.274  Sum_probs=37.2

Q ss_pred             ccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          154 TVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       154 ~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      .++....++++...+..++  +++|+|++|+|||||++.|.+...+.+|.
T Consensus        16 ~~~~~~il~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~~~~G~   63 (225)
T PRK10247         16 LAGDAKILNNISFSLRAGE--FKLITGPSGCGKSTLLKIVASLISPTSGT   63 (225)
T ss_pred             eeCCceeeeccEEEEcCCC--EEEEECCCCCCHHHHHHHHhcccCCCCCe
Confidence            3443345666666677788  99999999999999999999987666554

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=98.11  E-value=8.4e-07  Score=69.25  Aligned_cols=42  Identities=21%  Similarity=0.370  Sum_probs=34.3

Q ss_pred             HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      .++++...+..++  +++|+|++|+|||||++.|.+...+.+|.
T Consensus        17 il~~vs~~i~~Ge--~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~   58 (243)
T TIGR02315        17 ALKNINLNINPGE--FVAIIGPSGAGKSTLLRCINRLVEPSSGS   58 (243)
T ss_pred             eeecceEEEcCCC--EEEEECCCCCCHHHHHHHHhCCcCCCccE
Confidence            5556666666788  99999999999999999999987665553

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=98.11  E-value=4.9e-07  Score=69.43  Aligned_cols=42  Identities=31%  Similarity=0.392  Sum_probs=33.7

Q ss_pred             HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      .++++...+..++  +++|+|++|+|||||++.|.+...+.+|.
T Consensus        19 il~~~s~~i~~G~--~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~   60 (218)
T cd03255          19 ALKGVSLSIEKGE--FVAIVGPSGSGKSTLLNILGGLDRPTSGE   60 (218)
T ss_pred             EEeeeEEEEcCCC--EEEEEcCCCCCHHHHHHHHhCCcCCCcee
Confidence            4455555566677  99999999999999999999987766553

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]

Probab=98.07  E-value=5.2e-07  Score=72.42  Aligned_cols=52  Identities=33%  Similarity=0.441  Sum_probs=43.3

Q ss_pred             CCCCccc-hHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          150 PIGKTVG-LDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       150 ~~~~~~g-~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      ..++.+| ....++++...+..++  ++++.|+||+|||||.+.+.+...+.+|.
T Consensus         9 ~l~k~~~~~~~~l~~vs~~i~~Ge--i~gllG~NGAGKTTllk~l~gl~~p~~G~   61 (293)
T COG1131           9 NLTKKYGGDKTALDGVSFEVEPGE--IFGLLGPNGAGKTTLLKILAGLLKPTSGE   61 (293)
T ss_pred             ceEEEeCCCCEEEeceeEEEcCCe--EEEEECCCCCCHHHHHHHHhCCcCCCceE
Confidence            4456677 4667778888888888  99999999999999999999998876554

>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=98.06  E-value=3e-06  Score=71.66  Aligned_cols=56  Identities=20%  Similarity=0.281  Sum_probs=44.3

Q ss_pred             ccccCCCCccchH--HHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          146 VEERPIGKTVGLD--SIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       146 ~~~~~~~~~~g~~--~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      ....+.+..|..+  ..++++...+..++  .|+|+|..|+|||||++.+.+.+++++|+
T Consensus       337 l~~~~vsF~y~~~~~~~L~~~~l~l~~GE--kvAIlG~SGsGKSTllqLl~~~~~~~~G~  394 (573)
T COG4987         337 LELRNVSFTYPGQQTKALKNFNLTLAQGE--KVAILGRSGSGKSTLLQLLAGAWDPQQGS  394 (573)
T ss_pred             eeeccceeecCCCccchhhccceeecCCC--eEEEECCCCCCHHHHHHHHHhccCCCCCe
Confidence            3444445455332  48888888888999  99999999999999999999988887664

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=98.05  E-value=8.7e-07  Score=68.43  Aligned_cols=42  Identities=26%  Similarity=0.423  Sum_probs=34.3

Q ss_pred             HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      .++++...+..++  +++|+|++|+|||||++.+.+...+.+|.
T Consensus        20 ~l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~~~~G~   61 (228)
T cd03257          20 ALDDVSFSIKKGE--TLGLVGESGSGKSTLARAILGLLKPTSGS   61 (228)
T ss_pred             eecCceeEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCce
Confidence            4555666666788  99999999999999999999987766554

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake

Probab=98.04  E-value=8.5e-07  Score=69.01  Aligned_cols=42  Identities=31%  Similarity=0.469  Sum_probs=33.3

Q ss_pred             HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      .++++...+..++  +++|+|++|+|||||++.|.+...+.+|.
T Consensus        36 il~~vs~~i~~Ge--~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~   77 (236)
T cd03267          36 ALKGISFTIEKGE--IVGFIGPNGAGKTTTLKILSGLLQPTSGE   77 (236)
T ss_pred             eeeceeEEEcCCC--EEEEECCCCCCHHHHHHHHhCCcCCCceE
Confidence            4445555556677  99999999999999999999987665554

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=98.03  E-value=9.1e-07  Score=68.95  Aligned_cols=42  Identities=31%  Similarity=0.431  Sum_probs=33.5

Q ss_pred             HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      .++++...+..++  +++|+|++|+|||||++.+.+...+.+|.
T Consensus        16 ~l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~   57 (241)
T cd03256          16 ALKDVSLSINPGE--FVALIGPSGAGKSTLLRCLNGLVEPTSGS   57 (241)
T ss_pred             EEecceEEEcCCC--EEEEECCCCCCHHHHHHHHhCCcCCCCce
Confidence            4455555566678  99999999999999999999987665554

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=98.02  E-value=7.7e-07  Score=69.36  Aligned_cols=42  Identities=29%  Similarity=0.367  Sum_probs=33.7

Q ss_pred             HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      .++++...+..++  +++|+|++|+|||||++.+.+...+.+|.
T Consensus        17 il~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~   58 (239)
T cd03296          17 ALDDVSLDIPSGE--LVALLGPSGSGKTTLLRLIAGLERPDSGT   58 (239)
T ss_pred             eeeeeeEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCceE
Confidence            4555555566777  99999999999999999999987665553

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=98.02  E-value=2.3e-06  Score=65.49  Aligned_cols=42  Identities=31%  Similarity=0.363  Sum_probs=34.1

Q ss_pred             HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      .++++...+..++  +++|+|++|+|||||++.|.+...+.+|.
T Consensus        17 il~~is~~i~~G~--~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~   58 (214)
T TIGR02673        17 ALHDVSLHIRKGE--FLFLTGPSGAGKTTLLKLLYGALTPSRGQ   58 (214)
T ss_pred             eecceeEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCce
Confidence            4556666667788  99999999999999999999987665453

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.02  E-value=1.1e-06  Score=69.88  Aligned_cols=43  Identities=26%  Similarity=0.370  Sum_probs=34.8

Q ss_pred             HHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          159 SIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       159 ~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      ..++++...+..++  +++|+|++|+|||||++.|.+...+.+|.
T Consensus        15 ~il~~isl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~   57 (271)
T PRK13638         15 PVLKGLNLDFSLSP--VTGLVGANGCGKSTLFMNLSGLLRPQKGA   57 (271)
T ss_pred             ccccceEEEEcCCC--EEEEECCCCCCHHHHHHHHcCCCCCCccE
Confidence            35556666666777  99999999999999999999987776554

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=98.00  E-value=8.1e-07  Score=68.33  Aligned_cols=42  Identities=26%  Similarity=0.450  Sum_probs=33.2

Q ss_pred             HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      .++++...+..++  +++|+|++|+|||||++.+.+...+.+|.
T Consensus        19 il~~vs~~i~~G~--~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~   60 (220)
T cd03293          19 ALEDISLSVEEGE--FVALVGPSGCGKSTLLRIIAGLERPTSGE   60 (220)
T ss_pred             EEeceeEEEeCCc--EEEEECCCCCCHHHHHHHHhCCCCCCceE
Confidence            3445555566677  99999999999999999999987665553

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13540 cytochrome c biogenesis protein CcmA; Provisional

Probab=98.00  E-value=8.7e-07  Score=67.21  Aligned_cols=42  Identities=24%  Similarity=0.397  Sum_probs=34.1

Q ss_pred             HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      .++++...+.+++  +++|+|++|+|||||++.|.+...+.+|.
T Consensus        16 il~~~s~~i~~Ge--~~~l~G~nGsGKSTLl~~i~G~~~~~~G~   57 (200)
T PRK13540         16 LLQQISFHLPAGG--LLHLKGSNGAGKTTLLKLIAGLLNPEKGE   57 (200)
T ss_pred             EEeeeeEEECCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCee
Confidence            4555555566778  99999999999999999999987776564

>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea

Probab=98.00  E-value=1.1e-06  Score=69.77  Aligned_cols=42  Identities=24%  Similarity=0.401  Sum_probs=33.0

Q ss_pred             HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      .++++...+..++  +++|+|++|+|||||++.+.+...+.+|.
T Consensus        39 il~~is~~i~~Ge--~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~   80 (269)
T cd03294          39 GVNDVSLDVREGE--IFVIMGLSGSGKSTLLRCINRLIEPTSGK   80 (269)
T ss_pred             EeeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCeE
Confidence            3444555556677  99999999999999999999987765553

This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=98.00  E-value=1.3e-06  Score=70.78  Aligned_cols=50  Identities=30%  Similarity=0.386  Sum_probs=39.5

Q ss_pred             CCccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          152 GKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      .+.||....++++...+.+++  .+.++||+|||||||.++|.+-..+.+|.
T Consensus        10 ~K~yg~~~~l~~i~l~i~~Ge--f~vllGPSGcGKSTlLr~IAGLe~~~~G~   59 (338)
T COG3839          10 RKSFGSFEVLKDVNLDIEDGE--FVVLLGPSGCGKSTLLRMIAGLEEPTSGE   59 (338)
T ss_pred             EEEcCCceeeecceEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCce
Confidence            445554335666666777888  99999999999999999999998887664

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=98.00  E-value=1.5e-06  Score=67.44  Aligned_cols=42  Identities=26%  Similarity=0.457  Sum_probs=33.9

Q ss_pred             HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      .++++...+..++  +++|+|++|+|||||++.+.+...+.+|.
T Consensus        20 il~~~s~~i~~Ge--~~~l~G~nGsGKSTLl~~l~G~~~~~~G~   61 (233)
T cd03258          20 ALKDVSLSVPKGE--IFGIIGRSGAGKSTLIRCINGLERPTSGS   61 (233)
T ss_pred             eeecceEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCce
Confidence            4555555566778  99999999999999999999987776553

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=98.00  E-value=8.8e-07  Score=68.89  Aligned_cols=42  Identities=24%  Similarity=0.392  Sum_probs=33.2

Q ss_pred             HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      .++++...+..++  +++|+|++|+|||||++.|.+...+.+|.
T Consensus        16 ~l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~p~~G~   57 (236)
T TIGR03864        16 ALDDVSFTVRPGE--FVALLGPNGAGKSTLFSLLTRLYVAQEGQ   57 (236)
T ss_pred             EEeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCcCCCceE
Confidence            3444555556677  99999999999999999999987776554

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

Probab=97.99  E-value=1.4e-06  Score=68.34  Aligned_cols=42  Identities=24%  Similarity=0.316  Sum_probs=34.0

Q ss_pred             HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      .++++...+..++  +++|+|++|+|||||++.|.+...+.+|.
T Consensus        18 ~l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~~~~G~   59 (250)
T PRK11264         18 VLHGIDLEVKPGE--VVAIIGPSGSGKTTLLRCINLLEQPEAGT   59 (250)
T ss_pred             eeccceEEEcCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCeE
Confidence            4556666666788  99999999999999999999987665453

>TIGR02903 spore_lon_C ATP-dependent protease, Lon family

Probab=97.99  E-value=0.00031  Score=62.05  Aligned_cols=47  Identities=28%  Similarity=0.331  Sum_probs=39.0

Q ss_pred             CCccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945          152 GKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFR  198 (206)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~  198 (206)
                      ..++|.+..+..+...+.......+.|+|++|+||||||+.+++...
T Consensus       154 ~~iiGqs~~~~~l~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~  200 (615)
T TIGR02903       154 SEIVGQERAIKALLAKVASPFPQHIILYGPPGVGKTTAARLALEEAK  200 (615)
T ss_pred             HhceeCcHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhhh
Confidence            45788888888887777666566899999999999999999988764

Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.

>PRK13536 nodulation factor exporter subunit NodI; Provisional

Probab=97.99  E-value=6e-07  Score=73.57  Aligned_cols=52  Identities=17%  Similarity=0.311  Sum_probs=40.8

Q ss_pred             CCCCccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          150 PIGKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       150 ~~~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      +.++.||....++++...+..++  +++++|+||+|||||++.|.+...+.+|.
T Consensus        46 nl~k~y~~~~~l~~is~~i~~Ge--i~gLlGpNGaGKSTLl~~L~Gl~~p~~G~   97 (340)
T PRK13536         46 GVSKSYGDKAVVNGLSFTVASGE--CFGLLGPNGAGKSTIARMILGMTSPDAGK   97 (340)
T ss_pred             EEEEEECCEEEEeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHHcCCCCCceE
Confidence            34445665456667776777788  99999999999999999999988776554

>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI

Probab=97.99  E-value=1.1e-06  Score=70.98  Aligned_cols=48  Identities=21%  Similarity=0.345  Sum_probs=37.2

Q ss_pred             ccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          154 TVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       154 ~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      .||....++++...+..++  +++|+|++|+|||||++.+.+...+.+|.
T Consensus        13 ~~~~~~~l~~vsl~i~~Ge--~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~   60 (303)
T TIGR01288        13 SYGDKVVVNDLSFTIARGE--CFGLLGPNGAGKSTIARMLLGMISPDRGK   60 (303)
T ss_pred             EeCCeEEEcceeEEEcCCc--EEEEECCCCCCHHHHHHHHhCCCCCCceE
Confidence            3443335666666677788  99999999999999999999987665553

This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional

Probab=97.99  E-value=1.5e-06  Score=68.49  Aligned_cols=42  Identities=21%  Similarity=0.314  Sum_probs=33.6

Q ss_pred             HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      .++++...+..++  +++|+|++|+|||||++.+.+...+.+|.
T Consensus        16 il~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~   57 (255)
T PRK11248         16 ALEDINLTLESGE--LLVVLGPSGCGKTTLLNLIAGFVPYQHGS   57 (255)
T ss_pred             eEeeeeEEECCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCcE
Confidence            3445555566678  99999999999999999999987765553

>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

Probab=97.99  E-value=2.8e-06  Score=75.51  Aligned_cols=55  Identities=24%  Similarity=0.339  Sum_probs=43.7

Q ss_pred             cccCCCCccchH--HHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          147 EERPIGKTVGLD--SIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       147 ~~~~~~~~~g~~--~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      ....++.-|+.+  ..++++...+..++  .|+|+|.+|+|||||+|++.+-..|..|.
T Consensus       473 ~~~nvsf~y~~~~~~vL~~isL~I~~Ge--~vaIvG~SGsGKSTL~KLL~gly~p~~G~  529 (709)
T COG2274         473 EFENVSFRYGPDDPPVLEDLSLEIPPGE--KVAIVGRSGSGKSTLLKLLLGLYKPQQGR  529 (709)
T ss_pred             EEEEEEEEeCCCCcchhhceeEEeCCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCce
Confidence            334445566654  57888888888899  99999999999999999999988876553

>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]

Probab=97.99  E-value=4.3e-06  Score=62.58  Aligned_cols=49  Identities=29%  Similarity=0.390  Sum_probs=38.7

Q ss_pred             Cccch-HHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          153 KTVGL-DSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       153 ~~~g~-~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      +-||. -+.++++.....+++  +.+|.|+||.||||+.++|+.-..|.+|.
T Consensus         9 K~y~~~v~AvrdVSF~ae~Ge--i~GlLG~NGAGKTT~LRmiatlL~P~~G~   58 (245)
T COG4555           9 KSYGSKVQAVRDVSFEAEEGE--ITGLLGENGAGKTTLLRMIATLLIPDSGK   58 (245)
T ss_pred             hhccCHHhhhhheeEEeccce--EEEEEcCCCCCchhHHHHHHHhccCCCce
Confidence            34443 236667777777788  99999999999999999999998887553

>PRK13538 cytochrome c biogenesis protein CcmA; Provisional

Probab=97.98  E-value=1.3e-06  Score=66.43  Aligned_cols=42  Identities=24%  Similarity=0.363  Sum_probs=33.6

Q ss_pred             HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      .++++...+..++  +++|+|++|+|||||++.|.+...+.+|.
T Consensus        16 ~l~~vs~~i~~Ge--~~~l~G~nGsGKSTLl~~l~G~~~p~~G~   57 (204)
T PRK13538         16 LFSGLSFTLNAGE--LVQIEGPNGAGKTSLLRILAGLARPDAGE   57 (204)
T ss_pred             EEecceEEECCCc--EEEEECCCCCCHHHHHHHHhCCCCCCCcE
Confidence            3445555566677  99999999999999999999987776553

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=97.98  E-value=1.2e-06  Score=77.58  Aligned_cols=50  Identities=26%  Similarity=0.393  Sum_probs=40.1

Q ss_pred             CCccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          152 GKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      +..||....++++...+..++  +++|+|+||+|||||++.|.+...+.+|.
T Consensus         8 s~~~g~~~~l~~vs~~i~~Ge--~v~LvG~NGsGKSTLLkiL~G~~~pd~G~   57 (638)
T PRK10636          8 QIRRGVRVLLDNATATINPGQ--KVGLVGKNGCGKSTLLALLKNEISADGGS   57 (638)
T ss_pred             EEEeCCceeecCcEEEECCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCce
Confidence            344565556777777777888  99999999999999999999987776564

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=97.98  E-value=5.4e-06  Score=63.53  Aligned_cols=42  Identities=24%  Similarity=0.279  Sum_probs=34.1

Q ss_pred             HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      .++++...+..++  +++|+|++|+|||||++.+.+...+.+|.
T Consensus        18 il~~isl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~   59 (216)
T TIGR00960        18 ALDNLNFHITKGE--MVFLVGHSGAGKSTFLKLILGIEKPTRGK   59 (216)
T ss_pred             EEEeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCceE
Confidence            4555656667788  99999999999999999999987765554

>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=97.98  E-value=1.4e-06  Score=66.31  Aligned_cols=50  Identities=28%  Similarity=0.339  Sum_probs=39.6

Q ss_pred             CCccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          152 GKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      ...||.-..+..+...+..++  +++++|.||+|||||.+.|.+-.++.+|.
T Consensus        10 ~~~YG~~~~L~gvsl~v~~Ge--iv~llG~NGaGKTTlLkti~Gl~~~~~G~   59 (237)
T COG0410          10 SAGYGKIQALRGVSLEVERGE--IVALLGRNGAGKTTLLKTIMGLVRPRSGR   59 (237)
T ss_pred             eecccceeEEeeeeeEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCee
Confidence            345666556666666777788  99999999999999999999988775453

>PRK13537 nodulation ABC transporter NodI; Provisional

Probab=97.98  E-value=1.2e-06  Score=70.77  Aligned_cols=51  Identities=24%  Similarity=0.308  Sum_probs=39.8

Q ss_pred             CCCccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          151 IGKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       151 ~~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      .+..||....++++...+..++  +++++|+||+|||||++.+.+-..+.+|.
T Consensus        13 l~k~~~~~~~l~~vsl~i~~Ge--i~gllGpNGaGKSTLl~~l~Gl~~p~~G~   63 (306)
T PRK13537         13 VEKRYGDKLVVDGLSFHVQRGE--CFGLLGPNGAGKTTTLRMLLGLTHPDAGS   63 (306)
T ss_pred             EEEEECCeEEEecceEEEeCCc--EEEEECCCCCCHHHHHHHHhcCCCCCceE
Confidence            3445554446667777777788  99999999999999999999988776553

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=97.98  E-value=2e-06  Score=66.49  Aligned_cols=52  Identities=31%  Similarity=0.405  Sum_probs=42.6

Q ss_pred             CCCCccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          150 PIGKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       150 ~~~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      ++++.|+....++++...+.+++  .+.++|++|+||||+.++|+.-.++++|.
T Consensus         6 nvsk~y~~~~av~~v~l~I~~ge--f~vliGpSGsGKTTtLkMINrLiept~G~   57 (309)
T COG1125           6 NVSKRYGNKKAVDDVNLTIEEGE--FLVLIGPSGSGKTTTLKMINRLIEPTSGE   57 (309)
T ss_pred             eeehhcCCceeeeeeeEEecCCe--EEEEECCCCCcHHHHHHHHhcccCCCCce
Confidence            34566776667777777777888  99999999999999999999888877664

>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional

Probab=97.98  E-value=1.2e-06  Score=69.45  Aligned_cols=48  Identities=29%  Similarity=0.375  Sum_probs=37.0

Q ss_pred             ccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          154 TVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       154 ~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      .++....++++...+..++  +++|+|++|+|||||++.|.+...+.+|.
T Consensus        20 ~~~~~~il~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~   67 (265)
T PRK10575         20 RVPGRTLLHPLSLTFPAGK--VTGLIGHNGSGKSTLLKMLGRHQPPSEGE   67 (265)
T ss_pred             EECCEEEEeeeeeEEcCCC--EEEEECCCCCCHHHHHHHHcCCCCCCCCE
Confidence            3443345666666677788  99999999999999999999987665553

>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional

Probab=97.98  E-value=2.1e-06  Score=66.38  Aligned_cols=42  Identities=29%  Similarity=0.366  Sum_probs=33.7

Q ss_pred             HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      .++++...+..++  +++|+|++|+|||||++.|++-..+.+|.
T Consensus        25 ~l~~~s~~i~~Ge--~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~   66 (228)
T PRK10584         25 ILTGVELVVKRGE--TIALIGESGSGKSTLLAILAGLDDGSSGE   66 (228)
T ss_pred             EEeccEEEEcCCC--EEEEECCCCCCHHHHHHHHHcCCCCCCee
Confidence            3455555566677  99999999999999999999987766554

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=97.98  E-value=1.5e-06  Score=66.77  Aligned_cols=42  Identities=29%  Similarity=0.341  Sum_probs=33.7

Q ss_pred             HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      .++++...+..++  +++|+|++|+|||||++.|.+...+.+|.
T Consensus        20 il~~~sl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~   61 (218)
T cd03266          20 AVDGVSFTVKPGE--VTGLLGPNGAGKTTTLRMLAGLLEPDAGF   61 (218)
T ss_pred             eecceEEEEcCCc--EEEEECCCCCCHHHHHHHHhCCcCCCCce
Confidence            4555555566677  99999999999999999999987765554

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>PRK14242 phosphate transporter ATP-binding protein; Provisional

Probab=97.98  E-value=1.6e-06  Score=68.19  Aligned_cols=45  Identities=27%  Similarity=0.316  Sum_probs=34.2

Q ss_pred             CCCccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          151 IGKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       151 ~~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      .+..|+....++++...+..++  +++|+|++|+|||||++.+.+-.
T Consensus        12 l~~~~~~~~il~~is~~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~   56 (253)
T PRK14242         12 LSFFYGDFQALHDISLEFEQNQ--VTALIGPSGCGKSTFLRCLNRMN   56 (253)
T ss_pred             eEEEECCeeeecceeEEEeCCC--EEEEECCCCCCHHHHHHHHHhhc
Confidence            3334443345666666667788  99999999999999999999853

>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional

Probab=97.97  E-value=1.3e-06  Score=68.78  Aligned_cols=42  Identities=29%  Similarity=0.375  Sum_probs=34.3

Q ss_pred             HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      .++++...+..++  +++|+|++|+|||||++.+++...+.+|.
T Consensus        21 il~~is~~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~   62 (258)
T PRK11701         21 GCRDVSFDLYPGE--VLGIVGESGSGKTTLLNALSARLAPDAGE   62 (258)
T ss_pred             eeeeeeEEEeCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCCE
Confidence            4555555566788  99999999999999999999987776564

>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed

Probab=97.97  E-value=8.7e-07  Score=69.62  Aligned_cols=41  Identities=24%  Similarity=0.336  Sum_probs=32.1

Q ss_pred             HHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          161 ISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       161 ~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      +.++...+..++  +++|+|++|+|||||++.|++...+.+|.
T Consensus        20 l~~vs~~i~~Ge--~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~   60 (251)
T PRK09544         20 LSDVSLELKPGK--ILTLLGPNGAGKSTLVRVVLGLVAPDEGV   60 (251)
T ss_pred             EEeEEEEEcCCc--EEEEECCCCCCHHHHHHHHhCCCCCCceE
Confidence            334444455677  99999999999999999999987766553

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional

Probab=97.96  E-value=1.7e-06  Score=67.47  Aligned_cols=41  Identities=22%  Similarity=0.217  Sum_probs=33.2

Q ss_pred             HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCC
Q 037945          160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEH  202 (206)
Q Consensus       160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~  202 (206)
                      .++++...+..++  +++|+|++|+|||||++.|.+...+.+|
T Consensus        17 il~~vsl~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~~~~G   57 (242)
T PRK11124         17 ALFDITLDCPQGE--TLVLLGPSGAGKSSLLRVLNLLEMPRSG   57 (242)
T ss_pred             eEeeeeeEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence            4455555566677  9999999999999999999998776555

>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=97.96  E-value=2.2e-06  Score=65.66  Aligned_cols=57  Identities=25%  Similarity=0.364  Sum_probs=47.2

Q ss_pred             CccccCCCCccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          145 PVEERPIGKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       145 ~~~~~~~~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      .+........+|.....+++...+..++  +.+|+|++|+|||||.+.|.+-.+|++|.
T Consensus         8 ~I~vr~v~~~fG~~~Ild~v~l~V~~Ge--i~~iiGgSGsGKStlLr~I~Gll~P~~Ge   64 (263)
T COG1127           8 LIEVRGVTKSFGDRVILDGVDLDVPRGE--ILAILGGSGSGKSTLLRLILGLLRPDKGE   64 (263)
T ss_pred             eEEEeeeeeecCCEEEecCceeeecCCc--EEEEECCCCcCHHHHHHHHhccCCCCCCe
Confidence            3444455667788888888888888899  99999999999999999999998887664

>smart00763 AAA_PrkA PrkA AAA domain

Probab=97.96  E-value=4.8e-05  Score=62.24  Aligned_cols=46  Identities=20%  Similarity=0.374  Sum_probs=39.7

Q ss_pred             CccchHHHHHHHHHhhhc------CCCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945          153 KTVGLDSIISEVWRCIED------HNEKVIGLYGMGGVGKTTLLKKLNNKFR  198 (206)
Q Consensus       153 ~~~g~~~~~~~l~~~L~~------~~~~vI~IvG~~G~GKTTLa~~i~~~~~  198 (206)
                      .++|.++.+++++.++..      ...+++.++|++|+||||||+.+.+...
T Consensus        52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~  103 (361)
T smart00763       52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLE  103 (361)
T ss_pred             hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence            689999999999999875      2356899999999999999999987763

This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.

>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.96  E-value=1.8e-06  Score=67.35  Aligned_cols=42  Identities=29%  Similarity=0.426  Sum_probs=33.7

Q ss_pred             HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      .++++...+..++  +++|+|++|+|||||++.+.+...+.+|.
T Consensus        18 ~l~~vsl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~   59 (241)
T PRK14250         18 ILKDISVKFEGGA--IYTIVGPSGAGKSTLIKLINRLIDPTEGS   59 (241)
T ss_pred             eeeeeeEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCcE
Confidence            4455555566677  99999999999999999999987766554

>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.96  E-value=3.4e-06  Score=61.76  Aligned_cols=51  Identities=27%  Similarity=0.336  Sum_probs=43.5

Q ss_pred             CCCCccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCC
Q 037945          150 PIGKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEH  202 (206)
Q Consensus       150 ~~~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~  202 (206)
                      ..++.||...-..++...|..++  |.+|||.+|+|||||.+.|.....|+.|
T Consensus        11 ~lsk~Yg~~~gc~~vsF~l~PGe--VLgiVGESGSGKtTLL~~is~rl~p~~G   61 (258)
T COG4107          11 GLSKLYGPGKGCRDVSFDLYPGE--VLGIVGESGSGKTTLLKCISGRLTPDAG   61 (258)
T ss_pred             hhhhhhCCCcCccccceeecCCc--EEEEEecCCCcHHhHHHHHhcccCCCCC
Confidence            34667887777888888888999  9999999999999999999988877644

>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional

Probab=97.95  E-value=1.1e-06  Score=69.83  Aligned_cols=42  Identities=21%  Similarity=0.437  Sum_probs=33.0

Q ss_pred             HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      .++++...+..++  +++|+|++|+|||||++.|.+...+.+|.
T Consensus        22 il~~vsl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~   63 (269)
T PRK11831         22 IFDNISLTVPRGK--ITAIMGPSGIGKTTLLRLIGGQIAPDHGE   63 (269)
T ss_pred             EEeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCce
Confidence            3444555555677  99999999999999999999987765553

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=97.95  E-value=2e-06  Score=76.13  Aligned_cols=50  Identities=26%  Similarity=0.367  Sum_probs=39.2

Q ss_pred             CCccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          152 GKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      +..||....++++...+..++  +++|+|+||+|||||++.|.+...+.+|.
T Consensus       319 ~~~y~~~~il~~isl~i~~Ge--~~~l~G~NGsGKSTLlk~l~G~~~p~~G~  368 (638)
T PRK10636        319 SAGYGDRIILDSIKLNLVPGS--RIGLLGRNGAGKSTLIKLLAGELAPVSGE  368 (638)
T ss_pred             EEEeCCeeeeccceEEECCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCCe
Confidence            334554445666666677788  99999999999999999999988776564

>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=97.94  E-value=2.1e-06  Score=69.76  Aligned_cols=42  Identities=19%  Similarity=0.340  Sum_probs=35.2

Q ss_pred             HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      .++++...+..++  +++|+|++|+|||||++.|.+...+.+|.
T Consensus        41 ~L~~vsl~i~~Ge--~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~   82 (320)
T PRK13631         41 ALNNISYTFEKNK--IYFIIGNSGSGKSTLVTHFNGLIKSKYGT   82 (320)
T ss_pred             ceeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCCe
Confidence            5666666667788  99999999999999999999988776554

>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional

Probab=97.94  E-value=2.1e-06  Score=67.78  Aligned_cols=42  Identities=24%  Similarity=0.497  Sum_probs=34.2

Q ss_pred             HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      .++++...+..++  +++|+|++|+|||||++.|.+...+.+|.
T Consensus        17 il~~is~~i~~Ge--~~~i~G~nGsGKSTLl~~i~G~~~p~~G~   58 (258)
T PRK13548         17 LLDDVSLTLRPGE--VVAILGPNGAGKSTLLRALSGELSPDSGE   58 (258)
T ss_pred             eeeeeeEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCCE
Confidence            4555666666788  99999999999999999999987765553

>PRK13539 cytochrome c biogenesis protein CcmA; Provisional

Probab=97.94  E-value=1.2e-06  Score=66.77  Aligned_cols=42  Identities=24%  Similarity=0.301  Sum_probs=33.3

Q ss_pred             HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      .++++...+..++  +++|+|++|+|||||++.|.+...+.+|.
T Consensus        17 ~l~~is~~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~~~~G~   58 (207)
T PRK13539         17 LFSGLSFTLAAGE--ALVLTGPNGSGKTTLLRLIAGLLPPAAGT   58 (207)
T ss_pred             EEeceEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCce
Confidence            3455555566677  99999999999999999999987665553

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=97.93  E-value=7.4e-06  Score=62.98  Aligned_cols=42  Identities=26%  Similarity=0.383  Sum_probs=33.8

Q ss_pred             HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      .++++...+..++  +++|+|++|+|||||++.|++...+.+|.
T Consensus        20 ~l~~isl~i~~G~--~~~i~G~nGsGKSTLl~~i~G~~~~~~G~   61 (221)
T TIGR02211        20 VLKGVSLSIGKGE--IVAIVGSSGSGKSTLLHLLGGLDNPTSGE   61 (221)
T ss_pred             eEeeeEEEEcCCc--EEEEECCCCCCHHHHHHHHhCCCCCCCcE
Confidence            4455555666778  99999999999999999999987765553

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]

Probab=97.93  E-value=7.2e-06  Score=68.13  Aligned_cols=44  Identities=32%  Similarity=0.441  Sum_probs=34.5

Q ss_pred             chHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCC
Q 037945          156 GLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTE  201 (206)
Q Consensus       156 g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~  201 (206)
                      |....+.++-.-+.-+.  .|+|||++|+|||||.+++.+...|..
T Consensus       598 gqkpLFkkldFGiDmdS--RiaIVGPNGVGKSTlLkLL~Gkl~P~~  641 (807)
T KOG0066|consen  598 GQKPLFKKLDFGIDMDS--RIAIVGPNGVGKSTLLKLLIGKLDPND  641 (807)
T ss_pred             CCCchhhcccccccccc--eeEEECCCCccHHHHHHHHhcCCCCCc
Confidence            55556666655554455  999999999999999999999887753

>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional

Probab=97.93  E-value=1.7e-06  Score=67.49  Aligned_cols=42  Identities=21%  Similarity=0.384  Sum_probs=33.8

Q ss_pred             HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      .+.++...+..++  +++|+|++|+|||||++.+.+...+.+|.
T Consensus        18 ~l~~~sl~i~~Ge--~~~l~G~nGsGKSTLl~~l~G~~~~~~G~   59 (241)
T PRK10895         18 VVEDVSLTVNSGE--IVGLLGPNGAGKTTTFYMVVGIVPRDAGN   59 (241)
T ss_pred             EEeeeeEEEcCCc--EEEEECCCCCCHHHHHHHHhCCCCCCCcE
Confidence            4455555666778  99999999999999999999987665553

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.92  E-value=2.1e-06  Score=65.57  Aligned_cols=49  Identities=31%  Similarity=0.424  Sum_probs=39.5

Q ss_pred             CCcc-chHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCC
Q 037945          152 GKTV-GLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEH  202 (206)
Q Consensus       152 ~~~~-g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~  202 (206)
                      +..| |....++++...+..++  .|+|+|++|+|||||.+.+.+-..+.+|
T Consensus        10 ~k~yp~~~~aL~~Vnl~I~~GE--~VaiIG~SGaGKSTLLR~lngl~d~t~G   59 (258)
T COG3638          10 SKTYPGGHQALKDVNLEINQGE--MVAIIGPSGAGKSTLLRSLNGLVDPTSG   59 (258)
T ss_pred             eeecCCCceeeeeEeEEeCCCc--EEEEECCCCCcHHHHHHHHhcccCCCcc
Confidence            3444 66667777777788889  9999999999999999999987766544

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=97.92  E-value=7.2e-06  Score=62.70  Aligned_cols=42  Identities=26%  Similarity=0.282  Sum_probs=34.1

Q ss_pred             HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      .++++...+..++  +++|+|++|+|||||++.+.+...+.+|.
T Consensus        16 ~l~~~sl~i~~G~--~~~i~G~nGsGKSTLl~~l~G~~~~~~G~   57 (214)
T cd03292          16 ALDGINISISAGE--FVFLVGPSGAGKSTLLKLIYKEELPTSGT   57 (214)
T ss_pred             eeeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhcCCCCCceE
Confidence            4555656666788  99999999999999999999987765553

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK

Probab=97.92  E-value=2.4e-06  Score=67.16  Aligned_cols=42  Identities=26%  Similarity=0.311  Sum_probs=34.0

Q ss_pred             HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      .++++...+..++  +++|+|++|+|||||++.+.+...+.+|.
T Consensus        18 ~l~~isl~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~~~~G~   59 (253)
T TIGR02323        18 GCRDVSFDLYPGE--VLGIVGESGSGKSTLLGCLAGRLAPDHGT   59 (253)
T ss_pred             EeecceEEEeCCc--EEEEECCCCCCHHHHHHHHhCCCCCCCcE
Confidence            4555666666788  99999999999999999999987665553

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.

>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export

Probab=97.92  E-value=1.6e-06  Score=66.89  Aligned_cols=46  Identities=30%  Similarity=0.367  Sum_probs=34.4

Q ss_pred             cchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCC
Q 037945          155 VGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEH  202 (206)
Q Consensus       155 ~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~  202 (206)
                      ||....++++...+..++  +++|+|++|+|||||++.+.+...+.+|
T Consensus        32 ~~~~~il~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~p~~G   77 (224)
T cd03220          32 VGEFWALKDVSFEVPRGE--RIGLIGRNGAGKSTLLRLLAGIYPPDSG   77 (224)
T ss_pred             cCCeEEEeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence            333334445555555677  9999999999999999999998766545

Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.

>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein

Probab=97.91  E-value=1.9e-06  Score=67.90  Aligned_cols=42  Identities=31%  Similarity=0.419  Sum_probs=34.1

Q ss_pred             HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      .++++...+..++  +++|+|++|+|||||++.|.+...+.+|.
T Consensus        16 il~~is~~i~~Ge--~~~i~G~nGsGKSTLl~~i~G~~~~~~G~   57 (256)
T TIGR03873        16 IVDGVDVTAPPGS--LTGLLGPNGSGKSTLLRLLAGALRPDAGT   57 (256)
T ss_pred             EEeeeeEEEcCCc--EEEEECCCCCCHHHHHHHHcCCCCCCCCE
Confidence            4555555666778  99999999999999999999987766563

This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.

>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL

Probab=97.90  E-value=4e-06  Score=64.66  Aligned_cols=42  Identities=26%  Similarity=0.425  Sum_probs=33.7

Q ss_pred             HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      .++++...+..++  +++|+|++|+|||||++.|.+...+.+|.
T Consensus        23 il~~vs~~i~~Ge--~~~l~G~nGsGKSTLl~~i~G~~~~~~G~   64 (224)
T TIGR02324        23 VLKNVSLTVNAGE--CVALSGPSGAGKSTLLKSLYANYLPDSGR   64 (224)
T ss_pred             EEecceEEECCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCCe
Confidence            3455555566777  99999999999999999999987765553

Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=97.90  E-value=3.2e-06  Score=72.72  Aligned_cols=48  Identities=13%  Similarity=0.170  Sum_probs=38.0

Q ss_pred             ccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          154 TVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       154 ~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      .||....++++...+..++  +++|+|++|+|||||++.+++...+.+|.
T Consensus        12 ~~~~~~il~~vsl~i~~Ge--~~~liG~nGsGKSTLl~~l~G~~~p~~G~   59 (490)
T PRK10938         12 RLSDTKTLQLPSLTLNAGD--SWAFVGANGSGKSALARALAGELPLLSGE   59 (490)
T ss_pred             EcCCeeecccceEEEcCCC--EEEEECCCCCCHHHHHHHHhccCCCCCce
Confidence            4443346667777777788  99999999999999999999987765554

>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment

Probab=97.90  E-value=2.5e-06  Score=66.60  Aligned_cols=41  Identities=27%  Similarity=0.348  Sum_probs=32.4

Q ss_pred             HHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          161 ISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       161 ~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      ++++...+..++  +++|+|++|+|||||++.+.+...+.+|.
T Consensus        17 l~~is~~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~~~~G~   57 (242)
T cd03295          17 VNNLNLEIAKGE--FLVLIGPSGSGKTTTMKMINRLIEPTSGE   57 (242)
T ss_pred             eeeeEEEECCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCce
Confidence            444445555677  99999999999999999999987765553

ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=97.89  E-value=1.8e-06  Score=67.84  Aligned_cols=41  Identities=24%  Similarity=0.438  Sum_probs=33.2

Q ss_pred             HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCC
Q 037945          160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEH  202 (206)
Q Consensus       160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~  202 (206)
                      .++++...+..++  +++|+|++|+|||||++.|++..++.+|
T Consensus        20 ~l~~is~~i~~Ge--~~~l~G~nGsGKSTLl~~l~Gl~~~~~G   60 (255)
T PRK11300         20 AVNNVNLEVREQE--IVSLIGPNGAGKTTVFNCLTGFYKPTGG   60 (255)
T ss_pred             EEEeeeeEEcCCe--EEEEECCCCCCHHHHHHHHhCCcCCCcc
Confidence            4455555566677  9999999999999999999998776655

>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

Probab=97.89  E-value=6.8e-06  Score=60.92  Aligned_cols=44  Identities=30%  Similarity=0.326  Sum_probs=38.4

Q ss_pred             HHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          158 DSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       158 ~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      ...+.++...+..++  .+=++|++|+|||||.++||...++++|+
T Consensus        15 ~~aL~~vs~~i~~Ge--f~fl~GpSGAGKSTllkLi~~~e~pt~G~   58 (223)
T COG2884          15 REALRDVSFHIPKGE--FVFLTGPSGAGKSTLLKLIYGEERPTRGK   58 (223)
T ss_pred             chhhhCceEeecCce--EEEEECCCCCCHHHHHHHHHhhhcCCCce
Confidence            447778888888888  89999999999999999999999987664

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=97.89  E-value=2.3e-06  Score=75.82  Aligned_cols=50  Identities=22%  Similarity=0.336  Sum_probs=38.5

Q ss_pred             CCccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          152 GKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      +..||....++++...+..++  +++|+|+||+|||||++.|++...+.+|.
T Consensus       326 ~~~~~~~~il~~vsl~i~~Ge--~~~l~G~NGsGKSTLlk~l~G~~~p~~G~  375 (635)
T PRK11147        326 NYQIDGKQLVKDFSAQVQRGD--KIALIGPNGCGKTTLLKLMLGQLQADSGR  375 (635)
T ss_pred             EEEECCeEEEcCcEEEEcCCC--EEEEECCCCCcHHHHHHHHhCCCCCCCcE
Confidence            334554445666666667788  99999999999999999999987776564

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=97.89  E-value=9.9e-06  Score=59.60  Aligned_cols=42  Identities=17%  Similarity=0.260  Sum_probs=33.7

Q ss_pred             HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      .++++...+..++  +++|+|++|+|||||++.+.+...+.+|.
T Consensus        16 ~l~~i~l~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~~~~G~   57 (166)
T cd03223          16 LLKDLSFEIKPGD--RLLITGPSGTGKSSLFRALAGLWPWGSGR   57 (166)
T ss_pred             eeecCeEEECCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCce
Confidence            3445555566778  99999999999999999999987776564

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD

Probab=97.88  E-value=2.1e-06  Score=66.99  Aligned_cols=42  Identities=21%  Similarity=0.367  Sum_probs=33.6

Q ss_pred             HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      .++++...+.+++  +++|+|++|+|||||++.+.+...+.+|.
T Consensus        17 ~l~~vs~~i~~Ge--~~~l~G~nGsGKSTLl~~l~G~~~p~~G~   58 (242)
T TIGR03411        17 ALNDLSLYVDPGE--LRVIIGPNGAGKTTMMDVITGKTRPDEGS   58 (242)
T ss_pred             EeeeeeEEEcCCc--EEEEECCCCCCHHHHHHHHhCCCCCCCCe
Confidence            4445555566677  99999999999999999999987776564

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed

Probab=97.88  E-value=3e-06  Score=66.08  Aligned_cols=41  Identities=27%  Similarity=0.360  Sum_probs=32.9

Q ss_pred             HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCC
Q 037945          160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEH  202 (206)
Q Consensus       160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~  202 (206)
                      .++++...+..++  +++|+|++|+|||||++.|.+...+.+|
T Consensus        16 il~~~s~~i~~Ge--~~~l~G~nGsGKSTLl~~l~G~~~~~~G   56 (240)
T PRK09493         16 VLHNIDLNIDQGE--VVVIIGPSGSGKSTLLRCINKLEEITSG   56 (240)
T ss_pred             EeeeeeEEEcCCc--EEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence            3445555566677  9999999999999999999998776555

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=97.88  E-value=5.7e-06  Score=63.42  Aligned_cols=42  Identities=29%  Similarity=0.370  Sum_probs=33.7

Q ss_pred             HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      .+..+...+..++  .++|+|++|+|||||...+..-..|++|.
T Consensus        20 ~L~~v~l~i~~Ge--~vaI~GpSGSGKSTLLniig~ld~pt~G~   61 (226)
T COG1136          20 ALKDVNLEIEAGE--FVAIVGPSGSGKSTLLNLLGGLDKPTSGE   61 (226)
T ss_pred             ecccceEEEcCCC--EEEEECCCCCCHHHHHHHHhcccCCCCce
Confidence            3444555566788  99999999999999999999988776664

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=97.88  E-value=9.3e-06  Score=63.02  Aligned_cols=42  Identities=29%  Similarity=0.399  Sum_probs=33.3

Q ss_pred             HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      .++++...+..++  +++|+|++|+|||||++.|.+...+.+|.
T Consensus        24 il~~isl~i~~Ge--~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~   65 (233)
T PRK11629         24 VLHNVSFSIGEGE--MMAIVGSSGSGKSTLLHLLGGLDTPTSGD   65 (233)
T ss_pred             eEEeeEEEEcCCc--EEEEECCCCCCHHHHHHHHhcCCCCCceE
Confidence            4455555566677  99999999999999999999987665453

>PRK10908 cell division protein FtsE; Provisional

Probab=97.87  E-value=4.4e-06  Score=64.36  Aligned_cols=42  Identities=26%  Similarity=0.252  Sum_probs=33.3

Q ss_pred             HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      .++++...+..++  +++|+|++|+|||||++.|.+...+.+|.
T Consensus        17 ~l~~vsl~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~~~~G~   58 (222)
T PRK10908         17 ALQGVTFHMRPGE--MAFLTGHSGAGKSTLLKLICGIERPSAGK   58 (222)
T ss_pred             EEeeeeEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCceE
Confidence            3445555566677  99999999999999999999987766553

>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=97.87  E-value=2.2e-06  Score=66.64  Aligned_cols=42  Identities=36%  Similarity=0.439  Sum_probs=34.2

Q ss_pred             HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      .++++...+..++  +++|+|++|+|||||++.+.+...+.+|.
T Consensus        20 ~l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~p~~G~   61 (237)
T PRK11614         20 ALHEVSLHINQGE--IVTLIGANGAGKTTLLGTLCGDPRATSGR   61 (237)
T ss_pred             eeeeeEEEEcCCc--EEEEECCCCCCHHHHHHHHcCCCCCCCce
Confidence            4555666666788  99999999999999999999987765553

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export

Probab=97.87  E-value=5e-06  Score=61.46  Aligned_cols=42  Identities=29%  Similarity=0.430  Sum_probs=33.3

Q ss_pred             HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      .++++...+..++  +++|+|++|+|||||++.|.+-..+.+|.
T Consensus        17 ~l~~i~~~i~~G~--~~~l~G~nGsGKstLl~~i~G~~~~~~G~   58 (171)
T cd03228          17 VLKDVSLTIKPGE--KVAIVGPSGSGKSTLLKLLLRLYDPTSGE   58 (171)
T ss_pred             cccceEEEEcCCC--EEEEECCCCCCHHHHHHHHHcCCCCCCCE
Confidence            4445555556677  99999999999999999999987765554

They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=97.87  E-value=1.1e-05  Score=59.68  Aligned_cols=42  Identities=26%  Similarity=0.474  Sum_probs=33.6

Q ss_pred             HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      .++++...+.+++  +++|+|++|+|||||++.+.+...+.+|.
T Consensus        15 ~l~~~~~~i~~Ge--~~~i~G~nGsGKStLl~~l~G~~~~~~G~   56 (173)
T cd03230          15 ALDDISLTVEKGE--IYGLLGPNGAGKTTLIKIILGLLKPDSGE   56 (173)
T ss_pred             eeeeeEEEEcCCc--EEEEECCCCCCHHHHHHHHhCCCCCCCeE
Confidence            4455555666778  99999999999999999999987665454

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=97.87  E-value=2e-06  Score=75.12  Aligned_cols=50  Identities=26%  Similarity=0.404  Sum_probs=39.0

Q ss_pred             CCccc-hHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          152 GKTVG-LDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       152 ~~~~g-~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      +..|| ....++++...+..++  +++|+|++|+|||||++.|.+...+.+|.
T Consensus        13 ~~~y~~~~~il~~vs~~i~~Ge--~~~iiG~NGsGKSTLlk~i~G~~~p~~G~   63 (556)
T PRK11819         13 SKVVPPKKQILKDISLSFFPGA--KIGVLGLNGAGKSTLLRIMAGVDKEFEGE   63 (556)
T ss_pred             EEEeCCCCeeeeCceEEECCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCce
Confidence            33454 3445666777777788  99999999999999999999987776564

>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed

Probab=97.87  E-value=3.7e-05  Score=59.57  Aligned_cols=40  Identities=20%  Similarity=0.385  Sum_probs=30.3

Q ss_pred             HHHHHHhhhc-CCCeEEEEEcCCCCcHHHHHHHHHhhhcCC
Q 037945          161 ISEVWRCIED-HNEKVIGLYGMGGVGKTTLLKKLNNKFRDT  200 (206)
Q Consensus       161 ~~~l~~~L~~-~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~  200 (206)
                      ++.+..+... +...+|+|.|++|+|||||++.+.+.....
T Consensus        20 ~~~~~~~~~~~~~~~iigi~G~~GsGKTTl~~~L~~~l~~~   60 (229)
T PRK09270         20 LRRLAALQAEPQRRTIVGIAGPPGAGKSTLAEFLEALLQQD   60 (229)
T ss_pred             HHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence            3344444444 456799999999999999999999877654

>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.87  E-value=2.7e-06  Score=67.05  Aligned_cols=48  Identities=27%  Similarity=0.417  Sum_probs=37.4

Q ss_pred             CccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCC
Q 037945          153 KTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEH  202 (206)
Q Consensus       153 ~~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~  202 (206)
                      ..+|....+.++...+..++  +++|+|++|+|||||++.|.+...+.+|
T Consensus        18 ~~~~~~~~l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~iaG~~~~~~G   65 (257)
T PRK14246         18 LYINDKAILKDITIKIPNNS--IFGIMGPSGSGKSTLLKVLNRLIEIYDS   65 (257)
T ss_pred             EecCCceeEeceEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCcC
Confidence            34455445666666667788  9999999999999999999998766544

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain

Probab=97.86  E-value=1.4e-05  Score=59.16  Aligned_cols=42  Identities=26%  Similarity=0.373  Sum_probs=33.2

Q ss_pred             HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      .++++...+..++  +++|+|++|+|||||++.+.+...+.+|.
T Consensus        17 ~l~~~~~~i~~Ge--~~~i~G~nGsGKStLl~~l~G~~~~~~G~   58 (173)
T cd03246          17 VLRNVSFSIEPGE--SLAIIGPSGSGKSTLARLILGLLRPTSGR   58 (173)
T ss_pred             ceeeeEEEECCCC--EEEEECCCCCCHHHHHHHHHhccCCCCCe
Confidence            3444545556677  99999999999999999999987766554

They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra

>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein

Probab=97.86  E-value=3.6e-06  Score=65.93  Aligned_cols=39  Identities=31%  Similarity=0.383  Sum_probs=32.2

Q ss_pred             HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCC
Q 037945          160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDT  200 (206)
Q Consensus       160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~  200 (206)
                      .++++...+..++  +++|+|++|+|||||++.+.+-..+.
T Consensus        16 ~l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~p~   54 (247)
T TIGR00972        16 ALKNINLDIPKNQ--VTALIGPSGCGKSTLLRSLNRMNDLV   54 (247)
T ss_pred             eecceeEEECCCC--EEEEECCCCCCHHHHHHHHhccCCCC
Confidence            4555666666788  99999999999999999999877654

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.

>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters

Probab=97.86  E-value=2e-06  Score=65.31  Aligned_cols=37  Identities=27%  Similarity=0.420  Sum_probs=30.1

Q ss_pred             HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945          160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFR  198 (206)
Q Consensus       160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~  198 (206)
                      .++++...+..++  +++|+|++|+|||||++.+.+...
T Consensus        22 il~~~s~~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~   58 (202)
T cd03233          22 ILKDFSGVVKPGE--MVLVLGRPGSGCSTLLKALANRTE   58 (202)
T ss_pred             eeeeEEEEECCCc--EEEEECCCCCCHHHHHHHhcccCC
Confidence            3444555556677  999999999999999999999876

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=97.86  E-value=5.6e-06  Score=61.14  Aligned_cols=42  Identities=24%  Similarity=0.361  Sum_probs=35.2

Q ss_pred             HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      .++.++..|..++  -++|+|-+|+||||||+++.+-..|++|.
T Consensus        28 AV~~vSFtL~~~Q--TlaiIG~NGSGKSTLakMlaGmi~PTsG~   69 (267)
T COG4167          28 AVKPVSFTLREGQ--TLAIIGENGSGKSTLAKMLAGMIEPTSGE   69 (267)
T ss_pred             cccceEEEecCCc--EEEEEccCCCcHhHHHHHHhcccCCCCce
Confidence            4555666777788  99999999999999999999988887654

>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]

Probab=97.86  E-value=1.3e-05  Score=67.52  Aligned_cols=44  Identities=23%  Similarity=0.385  Sum_probs=37.8

Q ss_pred             HHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          158 DSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       158 ~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      ...+..+...|..++  .++|+|++|+|||||++.+.+-+.+.+|.
T Consensus       349 ~pil~~isF~l~~G~--~lgIIGPSgSGKSTLaR~lvG~w~p~~G~  392 (580)
T COG4618         349 KPILKGISFALQAGE--ALGIIGPSGSGKSTLARLLVGIWPPTSGS  392 (580)
T ss_pred             CcceecceeEecCCc--eEEEECCCCccHHHHHHHHHcccccCCCc
Confidence            346677888888899  99999999999999999999998876553

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=97.86  E-value=2.3e-06  Score=75.81  Aligned_cols=49  Identities=27%  Similarity=0.340  Sum_probs=38.2

Q ss_pred             CccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          153 KTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       153 ~~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      ..+|....++++...+..++  +++|+|++|+|||||++.|.+...+.+|.
T Consensus        11 ~~~~~~~il~~is~~i~~Ge--~v~LvG~NGsGKSTLLriiaG~~~p~~G~   59 (635)
T PRK11147         11 LSFSDAPLLDNAELHIEDNE--RVCLVGRNGAGKSTLMKILNGEVLLDDGR   59 (635)
T ss_pred             EEeCCceeEeCcEEEECCCC--EEEEECCCCCCHHHHHHHHcCCCCCCCeE
Confidence            34454445666666777788  99999999999999999999987765553

>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=97.86  E-value=3.6e-06  Score=67.15  Aligned_cols=42  Identities=29%  Similarity=0.367  Sum_probs=33.3

Q ss_pred             HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      .++++...+..++  +++|+|++|+|||||++.|.+...+.+|.
T Consensus        22 ~l~~is~~i~~Ge--~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~   63 (280)
T PRK13649         22 ALFDVNLTIEDGS--YTAFIGHTGSGKSTIMQLLNGLHVPTQGS   63 (280)
T ss_pred             eeeeeEEEEcCCc--EEEEECCCCCCHHHHHHHHhCCCCCCceE
Confidence            3445555566677  99999999999999999999987665554

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=97.86  E-value=1.2e-05  Score=58.96  Aligned_cols=42  Identities=26%  Similarity=0.424  Sum_probs=33.4

Q ss_pred             HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      .++++...+.+++  +++|+|++|+|||||++.+.+...+.+|.
T Consensus        15 vl~~i~~~i~~Ge--~~~l~G~nGsGKSTLl~~i~G~~~~~~G~   56 (163)
T cd03216          15 ALDGVSLSVRRGE--VHALLGENGAGKSTLMKILSGLYKPDSGE   56 (163)
T ss_pred             EEeeeEEEEeCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCeE
Confidence            3445555566788  99999999999999999999987765453

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=97.85  E-value=1.2e-05  Score=57.84  Aligned_cols=36  Identities=36%  Similarity=0.491  Sum_probs=29.5

Q ss_pred             HhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          166 RCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       166 ~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      ..+..++  +++|+|++|+|||||++.+.+...+.+|.
T Consensus        21 ~~~~~Ge--~~~i~G~nGsGKStLl~~l~G~~~~~~G~   56 (144)
T cd03221          21 LTINPGD--RIGLVGRNGAGKSTLLKLIAGELEPDEGI   56 (144)
T ss_pred             EEECCCC--EEEEECCCCCCHHHHHHHHcCCCCCCceE
Confidence            3344567  99999999999999999999987776553

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=97.85  E-value=4.1e-06  Score=72.18  Aligned_cols=51  Identities=27%  Similarity=0.425  Sum_probs=43.0

Q ss_pred             CCCccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          151 IGKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       151 ~~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      .+..+|....++++...+.+++  .||+||.||+|||||.+.|.+...+.+|+
T Consensus         9 ls~~~g~~~l~~~~~l~~~~G~--riGLvG~NGaGKSTLLkilaG~~~~~~G~   59 (530)
T COG0488           9 LSLAYGDRPLLENVSLTLNPGE--RIGLVGRNGAGKSTLLKILAGELEPDSGE   59 (530)
T ss_pred             eEEeeCCceeecCCcceeCCCC--EEEEECCCCCCHHHHHHHHcCCCcCCCCe
Confidence            3445677778888888888889  99999999999999999999988776564

>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional

Probab=97.85  E-value=5.1e-06  Score=65.89  Aligned_cols=42  Identities=21%  Similarity=0.348  Sum_probs=34.7

Q ss_pred             HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      .++++...+..++  +++|+|++|+|||||++.|.+...+.+|.
T Consensus        28 ~l~~vsl~i~~Ge--~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~   69 (267)
T PRK15112         28 AVKPLSFTLREGQ--TLAIIGENGSGKSTLAKMLAGMIEPTSGE   69 (267)
T ss_pred             eeeeeeEEecCCC--EEEEEcCCCCCHHHHHHHHhCCCCCCCCE
Confidence            4556666666788  99999999999999999999988776564

>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=97.85  E-value=2.7e-06  Score=68.05  Aligned_cols=42  Identities=24%  Similarity=0.400  Sum_probs=35.1

Q ss_pred             HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      .++++...+..++  +++|+|++|+|||||++.|.+-..+.+|.
T Consensus        21 ~l~~vs~~i~~Ge--~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~   62 (283)
T PRK13636         21 ALKGININIKKGE--VTAILGGNGAGKSTLFQNLNGILKPSSGR   62 (283)
T ss_pred             eeeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhcCCCCCccE
Confidence            5566666677788  99999999999999999999987776564

>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional

Probab=97.85  E-value=3.2e-06  Score=66.76  Aligned_cols=43  Identities=26%  Similarity=0.396  Sum_probs=33.7

Q ss_pred             ccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945          154 TVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFR  198 (206)
Q Consensus       154 ~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~  198 (206)
                      .|+....++++...+..++  +++|+|++|+|||||++.|.+...
T Consensus        22 ~~~~~~il~~isl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~   64 (260)
T PRK10744         22 YYGKFHALKNINLDIAKNQ--VTAFIGPSGCGKSTLLRTFNRMYE   64 (260)
T ss_pred             EeCCeEEeeceeEEEcCCC--EEEEECCCCCCHHHHHHHHhcccc
Confidence            3443335566666677788  999999999999999999998754

>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C

Probab=97.84  E-value=6.2e-06  Score=63.40  Aligned_cols=42  Identities=21%  Similarity=0.330  Sum_probs=34.5

Q ss_pred             HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      .++++...+..++  +++|+|++|+|||||++.+.+...+.+|.
T Consensus        19 ~l~~i~~~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~~~~G~   60 (221)
T cd03244          19 VLKNISFSIKPGE--KVGIVGRTGSGKSSLLLALFRLVELSSGS   60 (221)
T ss_pred             cccceEEEECCCC--EEEEECCCCCCHHHHHHHHHcCCCCCCCE
Confidence            5566666666788  99999999999999999999987766554

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional

Probab=97.84  E-value=2.3e-06  Score=67.46  Aligned_cols=42  Identities=26%  Similarity=0.365  Sum_probs=33.4

Q ss_pred             HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      .++++...+..++  +++|+|++|+|||||++.|.+...+.+|.
T Consensus        20 ~l~~is~~i~~Ge--~~~l~G~nGsGKSTLl~~i~G~~~~~~G~   61 (257)
T PRK10619         20 VLKGVSLQANAGD--VISIIGSSGSGKSTFLRCINFLEKPSEGS   61 (257)
T ss_pred             EEeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCeE
Confidence            4445555566677  99999999999999999999987765553

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=97.84  E-value=1.5e-05  Score=59.30  Aligned_cols=42  Identities=24%  Similarity=0.445  Sum_probs=34.0

Q ss_pred             HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      .++++...+..++  +++|+|++|+|||||++.+.+...+.+|.
T Consensus        17 ~l~~i~~~i~~Ge--~~~i~G~nGsGKStLl~~l~G~~~~~~G~   58 (178)
T cd03247          17 VLKNLSLELKQGE--KIALLGRSGSGKSTLLQLLTGDLKPQQGE   58 (178)
T ss_pred             ceEEEEEEEcCCC--EEEEECCCCCCHHHHHHHHhccCCCCCCE
Confidence            4455555566778  99999999999999999999987776564

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=97.84  E-value=4.2e-06  Score=67.04  Aligned_cols=42  Identities=21%  Similarity=0.388  Sum_probs=34.6

Q ss_pred             HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      .++++...+..++  +++|+|++|+|||||++.|.+...+.+|.
T Consensus        22 ~l~~vsl~i~~Ge--~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~   63 (287)
T PRK13641         22 GLDNISFELEEGS--FVALVGHTGSGKSTLMQHFNALLKPSSGT   63 (287)
T ss_pred             ceeeeEEEEeCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCcE
Confidence            4555656666788  99999999999999999999988776564

>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE

Probab=97.84  E-value=6.1e-06  Score=65.34  Aligned_cols=42  Identities=29%  Similarity=0.455  Sum_probs=34.6

Q ss_pred             HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      .++++...+..++  +++|+|++|+|||||++.|.+...+.+|.
T Consensus        26 il~~isl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~   67 (265)
T TIGR02769        26 VLTNVSLSIEEGE--TVGLLGRSGCGKSTLARLLLGLEKPAQGT   67 (265)
T ss_pred             EeeCceeEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCcE
Confidence            4556666666788  99999999999999999999987776553

This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.

>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.84  E-value=3.7e-06  Score=66.67  Aligned_cols=47  Identities=28%  Similarity=0.438  Sum_probs=35.3

Q ss_pred             cCCCCccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          149 RPIGKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       149 ~~~~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      ...+..|+....++++...+..++  +++|+|++|+|||||++.+.+-.
T Consensus        25 ~~l~~~~~~~~il~~vsl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~   71 (268)
T PRK14248         25 KDLSIYYGEKRAVNDISMDIEKHA--VTALIGPSGCGKSTFLRSINRMN   71 (268)
T ss_pred             EEEEEEeCCceeeeceEEEEcCCC--EEEEECCCCCCHHHHHHHHHhcc
Confidence            333444554445666666677788  99999999999999999998853

>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein

Probab=97.84  E-value=6.6e-06  Score=63.60  Aligned_cols=42  Identities=21%  Similarity=0.383  Sum_probs=34.3

Q ss_pred             HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      .++++...+..++  +++|+|++|+|||||++.+.+...+.+|.
T Consensus        18 ~l~~isl~i~~G~--~~~i~G~nGsGKSTLl~~l~G~~~~~~G~   59 (229)
T cd03254          18 VLKDINFSIKPGE--TVAIVGPTGAGKTTLINLLMRFYDPQKGQ   59 (229)
T ss_pred             cccceEEEEcCCC--EEEEECCCCCCHHHHHHHHhcCcCCCCCE
Confidence            5556666666788  99999999999999999999987765554

In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional

Probab=97.84  E-value=4.3e-06  Score=66.21  Aligned_cols=42  Identities=24%  Similarity=0.378  Sum_probs=34.8

Q ss_pred             HHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCC
Q 037945          159 SIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEH  202 (206)
Q Consensus       159 ~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~  202 (206)
                      ..++++...+..++  +++|+|++|+|||||++.|++...+.+|
T Consensus        21 ~~l~~isl~i~~Ge--~~~i~G~nGsGKSTLl~~i~G~~~~~~G   62 (265)
T PRK10253         21 TVAENLTVEIPDGH--FTAIIGPNGCGKSTLLRTLSRLMTPAHG   62 (265)
T ss_pred             EEeeecceEECCCC--EEEEECCCCCCHHHHHHHHcCCCCCCCc
Confidence            35666666677788  9999999999999999999998766545

>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional

Probab=97.84  E-value=3.7e-06  Score=66.18  Aligned_cols=41  Identities=24%  Similarity=0.391  Sum_probs=33.1

Q ss_pred             HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCC
Q 037945          160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEH  202 (206)
Q Consensus       160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~  202 (206)
                      .++++...+..++  +++|+|++|+|||||++.+.+...+.+|
T Consensus        17 il~~is~~i~~Ge--~~~l~G~nGsGKSTLl~~l~Gl~~~~~G   57 (255)
T PRK11231         17 ILNDLSLSLPTGK--ITALIGPNGCGKSTLLKCFARLLTPQSG   57 (255)
T ss_pred             EEeeeeeEEcCCc--EEEEECCCCCCHHHHHHHHhCCcCCCCc
Confidence            4555555566777  9999999999999999999998766545

>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]

Probab=97.84  E-value=3.1e-05  Score=60.87  Aligned_cols=49  Identities=22%  Similarity=0.360  Sum_probs=41.0

Q ss_pred             CCCccchHHHHHHHHHhhhc-----CCCeEEEEEcCCCCcHHHHHHHHHhhhcC
Q 037945          151 IGKTVGLDSIISEVWRCIED-----HNEKVIGLYGMGGVGKTTLLKKLNNKFRD  199 (206)
Q Consensus       151 ~~~~~g~~~~~~~l~~~L~~-----~~~~vI~IvG~~G~GKTTLa~~i~~~~~~  199 (206)
                      ...++|.+..++++.-.+..     ..+.=+-++||+|+||||||..|.+...+
T Consensus        25 l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgv   78 (332)
T COG2255          25 LDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGV   78 (332)
T ss_pred             HHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcC
Confidence            45689999999988877763     45678999999999999999999998754

>cd03290 ABCC_SUR1_N The SUR domain 1

Probab=97.84  E-value=4.7e-06  Score=63.98  Aligned_cols=42  Identities=21%  Similarity=0.283  Sum_probs=33.7

Q ss_pred             HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      .++++...+.+++  +++|+|++|+|||||++.|++...+.+|.
T Consensus        16 il~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~i~G~~~~~~G~   57 (218)
T cd03290          16 TLSNINIRIPTGQ--LTMIVGQVGCGKSSLLLAILGEMQTLEGK   57 (218)
T ss_pred             ceeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhccCCCCCCe
Confidence            4555555566777  99999999999999999999987665553

The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1

Probab=97.83  E-value=5.1e-06  Score=64.67  Aligned_cols=42  Identities=24%  Similarity=0.384  Sum_probs=33.2

Q ss_pred             HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      .++++...+..++  +++|+|++|+|||||++.|.+...+.+|.
T Consensus        18 ~l~~i~~~i~~Ge--~~~l~G~nGsGKSTLl~~i~G~~~~~~G~   59 (238)
T cd03249          18 ILKGLSLTIPPGK--TVALVGSSGCGKSTVVSLLERFYDPTSGE   59 (238)
T ss_pred             ceeceEEEecCCC--EEEEEeCCCCCHHHHHHHHhccCCCCCCE
Confidence            3444545556677  99999999999999999999987766564

In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.

>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules

Probab=97.83  E-value=6.8e-06  Score=63.42  Aligned_cols=42  Identities=24%  Similarity=0.386  Sum_probs=34.5

Q ss_pred             HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      .++++...+..++  +++|+|++|+|||||++.+.+...+.+|.
T Consensus        29 ~l~~is~~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~   70 (226)
T cd03248          29 VLQDVSFTLHPGE--VTALVGPSGSGKSTVVALLENFYQPQGGQ   70 (226)
T ss_pred             cccceEEEEcCCC--EEEEECCCCCCHHHHHHHHhcCcCCCCcE
Confidence            5556666666788  99999999999999999999987766554

Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=97.82  E-value=2.8e-06  Score=73.43  Aligned_cols=51  Identities=22%  Similarity=0.246  Sum_probs=38.8

Q ss_pred             CCCccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          151 IGKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       151 ~~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      .+..||....++++...+..++  +++|+|++|+|||||++.|.+...+.+|.
T Consensus        17 l~~~~~~~~il~~vsl~i~~Ge--~~~liG~NGsGKSTLl~~l~Gl~~p~~G~   67 (510)
T PRK15439         17 ISKQYSGVEVLKGIDFTLHAGE--VHALLGGNGAGKSTLMKIIAGIVPPDSGT   67 (510)
T ss_pred             EEEEeCCceeeeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCceE
Confidence            3444554445666666667788  99999999999999999999987765554

>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters

Probab=97.82  E-value=7e-06  Score=63.09  Aligned_cols=42  Identities=29%  Similarity=0.393  Sum_probs=33.7

Q ss_pred             HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      .++++...+..++  +++|+|++|+|||||++.|.+...+.+|.
T Consensus        19 ~l~~i~~~i~~G~--~~~i~G~nGsGKSTLl~~i~G~~~~~~G~   60 (220)
T cd03245          19 ALDNVSLTIRAGE--KVAIIGRVGSGKSTLLKLLAGLYKPTSGS   60 (220)
T ss_pred             cccceEEEEcCCC--EEEEECCCCCCHHHHHHHHhcCcCCCCCe
Confidence            4555555566778  99999999999999999999987665553

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=97.82  E-value=2.6e-06  Score=73.94  Aligned_cols=47  Identities=23%  Similarity=0.413  Sum_probs=36.1

Q ss_pred             cchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          155 VGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       155 ~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      ||....++++...+..++  +++|+|++|+|||||++.+.+...+.+|.
T Consensus        11 ~~~~~il~~vsl~i~~Ge--~~~liG~NGsGKSTLl~~l~Gl~~p~~G~   57 (530)
T PRK15064         11 FGAKPLFENISVKFGGGN--RYGLIGANGCGKSTFMKILGGDLEPSAGN   57 (530)
T ss_pred             eCCcEeEeCCEEEECCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCce
Confidence            343335556666666788  99999999999999999999987665454

>PLN03073 ABC transporter F family; Provisional

Probab=97.82  E-value=7.4e-06  Score=73.34  Aligned_cols=52  Identities=17%  Similarity=0.226  Sum_probs=39.0

Q ss_pred             CCCCccc-hHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          150 PIGKTVG-LDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       150 ~~~~~~g-~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      ..+..|+ ....++++...+..++  +++|+|++|+|||||++.|.+...+.+|.
T Consensus       513 ~ls~~y~~~~~il~~vsl~i~~Ge--~i~LvG~NGsGKSTLLk~L~Gll~p~~G~  565 (718)
T PLN03073        513 DASFGYPGGPLLFKNLNFGIDLDS--RIAMVGPNGIGKSTILKLISGELQPSSGT  565 (718)
T ss_pred             eeEEEeCCCCeeEeccEEEEcCCC--EEEEECCCCCcHHHHHHHHhCCCCCCCce
Confidence            3344453 2235666666677788  99999999999999999999987776554

>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.82  E-value=5.8e-06  Score=65.03  Aligned_cols=44  Identities=23%  Similarity=0.218  Sum_probs=34.8

Q ss_pred             ccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcC
Q 037945          154 TVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRD  199 (206)
Q Consensus       154 ~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~  199 (206)
                      .++....++++...+..++  +++|+|++|+|||||++.+.+-..+
T Consensus        16 ~~~~~~il~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~   59 (254)
T PRK14273         16 FYTDFKALNNINIKILKNS--ITALIGPSGCGKSTFLRTLNRMNDL   59 (254)
T ss_pred             EeCCceeecceeeEEcCCC--EEEEECCCCCCHHHHHHHHhccccC
Confidence            3443345666666777788  9999999999999999999987654

>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=97.82  E-value=4.6e-06  Score=66.42  Aligned_cols=42  Identities=26%  Similarity=0.352  Sum_probs=34.2

Q ss_pred             HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      .++++...+..++  +++|+|++|+|||||++.+.+...+.+|.
T Consensus        20 ~l~~isl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~   61 (274)
T PRK13647         20 ALKGLSLSIPEGS--KTALLGPNGAGKSTLLLHLNGIYLPQRGR   61 (274)
T ss_pred             eeeeEEEEEcCCC--EEEEECCCCCcHHHHHHHHhcCCCCCceE
Confidence            4555555666778  99999999999999999999987776564

>PRK13342 recombination factor protein RarA; Reviewed

Probab=97.82  E-value=2.5e-05  Score=65.81  Aligned_cols=47  Identities=28%  Similarity=0.410  Sum_probs=38.2

Q ss_pred             CCccchHHHHHH---HHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945          152 GKTVGLDSIISE---VWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFR  198 (206)
Q Consensus       152 ~~~~g~~~~~~~---l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~  198 (206)
                      ..++|.+..+..   +...+..+....+-++|++|+||||||+.+.+...
T Consensus        12 ~d~vGq~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~~   61 (413)
T PRK13342         12 DEVVGQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGATD   61 (413)
T ss_pred             HHhcCcHHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence            457888777655   77777777777888999999999999999988653

>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins

Probab=97.82  E-value=1.6e-05  Score=61.66  Aligned_cols=42  Identities=19%  Similarity=0.317  Sum_probs=34.6

Q ss_pred             HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      .++++...+..++  +++|+|++|+|||||++.+.+...+.+|.
T Consensus        17 ~l~~i~~~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~   58 (234)
T cd03251          17 VLRDISLDIPAGE--TVALVGPSGSGKSTLVNLIPRFYDVDSGR   58 (234)
T ss_pred             ceeeeeEEEcCCC--EEEEECCCCCCHHHHHHHHhccccCCCCE
Confidence            4555666667788  99999999999999999999987776564

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E

Probab=97.81  E-value=6.6e-06  Score=63.99  Aligned_cols=41  Identities=27%  Similarity=0.434  Sum_probs=32.7

Q ss_pred             HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCC
Q 037945          160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEH  202 (206)
Q Consensus       160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~  202 (206)
                      .++++...+..++  +++|+|++|+|||||++.+.+...+.+|
T Consensus        17 ~l~~isl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~~~G   57 (237)
T cd03252          17 ILDNISLRIKPGE--VVGIVGRSGSGKSTLTKLIQRFYVPENG   57 (237)
T ss_pred             ceeceEEEEcCCC--EEEEECCCCCCHHHHHHHHhcCcCCCCC
Confidence            3445555556677  9999999999999999999998766555

coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=97.81  E-value=4.3e-06  Score=72.60  Aligned_cols=49  Identities=24%  Similarity=0.359  Sum_probs=37.8

Q ss_pred             CccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          153 KTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       153 ~~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      ..|+....++++...+..++  +++|+|++|+|||||++.|++...+.+|.
T Consensus       327 ~~~~~~~~l~~is~~i~~Ge--~~~l~G~NGsGKSTLl~~i~G~~~p~~G~  375 (530)
T PRK15064        327 KGFDNGPLFKNLNLLLEAGE--RLAIIGENGVGKTTLLRTLVGELEPDSGT  375 (530)
T ss_pred             EeeCCceeecCcEEEECCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCeE
Confidence            34554445666666666788  99999999999999999999987665453

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=97.81  E-value=3.6e-06  Score=72.59  Aligned_cols=48  Identities=21%  Similarity=0.243  Sum_probs=36.7

Q ss_pred             ccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          154 TVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       154 ~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      .|+....++++...+..++  +++|+|++|+|||||++.+.+...+.+|.
T Consensus        13 ~~~~~~~l~~is~~i~~Ge--~~~l~G~NGsGKSTLl~~l~G~~~p~~G~   60 (501)
T PRK10762         13 AFPGVKALSGAALNVYPGR--VMALVGENGAGKSTMMKVLTGIYTRDAGS   60 (501)
T ss_pred             EeCCeEEeeeeeEEEcCCe--EEEEECCCCCCHHHHHHHHhCCCCCCCcE
Confidence            3443335566666666778  99999999999999999999987765554

>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=97.80  E-value=1.6e-05  Score=63.39  Aligned_cols=42  Identities=14%  Similarity=0.319  Sum_probs=34.0

Q ss_pred             HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      .++++...+..++  +++|+|++|+|||||++.+++-..+.+|.
T Consensus        22 ~l~~vsl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~   63 (279)
T PRK13650         22 TLNDVSFHVKQGE--WLSIIGHNGSGKSTTVRLIDGLLEAESGQ   63 (279)
T ss_pred             eeeeeEEEEeCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCcE
Confidence            4455555566778  99999999999999999999987776564

>PRK14238 phosphate transporter ATP-binding protein; Provisional

Probab=97.80  E-value=4.6e-06  Score=66.25  Aligned_cols=45  Identities=27%  Similarity=0.386  Sum_probs=33.8

Q ss_pred             CCccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945          152 GKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFR  198 (206)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~  198 (206)
                      ...|+....++++...+..++  +++|+|.+|+|||||++.|.+...
T Consensus        31 ~~~~~~~~il~~vsl~i~~Ge--~~~I~G~nGsGKSTLl~~i~Gl~~   75 (271)
T PRK14238         31 NLWYGEDHALKNINLDIHENE--VTAIIGPSGCGKSTYIKTLNRMVE   75 (271)
T ss_pred             EEEECCcceeeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHHhhcc
Confidence            333443334555555666778  999999999999999999998764

>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C

Probab=97.80  E-value=7.8e-06  Score=62.13  Aligned_cols=42  Identities=17%  Similarity=0.315  Sum_probs=34.9

Q ss_pred             HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      .++++...+..++  +++|.|++|+|||||++.|.+...+.+|.
T Consensus        20 il~~~s~~i~~G~--~~~i~G~nG~GKSTLl~~i~G~~~~~~G~   61 (204)
T cd03250          20 TLKDINLEVPKGE--LVAIVGPVGSGKSSLLSALLGELEKLSGS   61 (204)
T ss_pred             eeeeeeEEECCCC--EEEEECCCCCCHHHHHHHHhCcCCCCCCe
Confidence            4556666667788  99999999999999999999987776664

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>PF12061 DUF3542: Protein of unknown function (DUF3542); InterPro: IPR021929 R1 is a gene for resistance to late blight, the most destructive disease in potato cultivation worldwide

Probab=97.80  E-value=1.7e-05  Score=62.78  Aligned_cols=78  Identities=13%  Similarity=0.134  Sum_probs=65.8

Q ss_pred             hhhhhhhhHhhhhhhhccccccchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHHHHHH
Q 037945            8 IMDYLVCPLCGVISKHCGYVCGLTDSLNSLREAGRDLVNITRDVEARVDLAVEQRLRPTHEVNGWLESAKIMLREVDYIL   87 (206)
Q Consensus         8 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~ae~~~~~~~~~~~~wl~~l~~~~~~~ed~l   87 (206)
                      .++.+.++|-++..+....+..++++++.++++|+.|+.||+.+      ++...... ...+.+..++...+|++|.++
T Consensus       297 yVdFlL~NLkdfq~rysdSlaflKnQiqvIQ~elesLqpFLk~V------~ee~~nkh-~~~ed~a~~ii~kAyevEYVV  369 (402)
T PF12061_consen  297 YVDFLLKNLKDFQGRYSDSLAFLKNQIQVIQTELESLQPFLKHV------VEEPHNKH-DTNEDCATQIIRKAYEVEYVV  369 (402)
T ss_pred             HHHHHHhhHHHHhccccchHHHHHHHHHHHHHHHHHhhHHHHHH------Hhccchhh-hhhhhHHHHHHHHHhheeeee
Confidence            45667777889999999999999999999999999999999986      45544444 338999999999999999999


Q ss_pred             hhhhH
Q 037945           88 HRGDE   92 (206)
Q Consensus        88 d~~~~   92 (206)
                      |.|..
T Consensus       370 DaCi~  374 (402)
T PF12061_consen  370 DACIS  374 (402)
T ss_pred             ehhhc
Confidence            99743

The R1 gene belongs to the class of plant genes for pathogen resistance that have a leucine zipper motif, a putative nucleotide binding domain and a leucine-rich repeat domain []. Most proteins matching this entry are found associated with PF00931 from PFAM.

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=97.80  E-value=1.1e-05  Score=58.85  Aligned_cols=42  Identities=26%  Similarity=0.400  Sum_probs=34.9

Q ss_pred             HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      .+.+++..+..++  .|+|.||+|+|||||.+.|++-..+++|+
T Consensus        18 il~~isl~v~~Ge--~iaitGPSG~GKStllk~va~Lisp~~G~   59 (223)
T COG4619          18 ILNNISLSVRAGE--FIAITGPSGCGKSTLLKIVASLISPTSGT   59 (223)
T ss_pred             eecceeeeecCCc--eEEEeCCCCccHHHHHHHHHhccCCCCce
Confidence            4555666677788  99999999999999999999988777665

>PRK15056 manganese/iron transporter ATP-binding protein; Provisional

Probab=97.79  E-value=1.6e-05  Score=63.28  Aligned_cols=41  Identities=24%  Similarity=0.348  Sum_probs=32.6

Q ss_pred             HHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          161 ISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       161 ~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      ++++...+..++  +++|+|++|+|||||++.|.+...+.+|.
T Consensus        23 l~~vsl~i~~Ge--~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~   63 (272)
T PRK15056         23 LRDASFTVPGGS--IAALVGVNGSGKSTLFKALMGFVRLASGK   63 (272)
T ss_pred             EEeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCceE
Confidence            444555556677  99999999999999999999987765554

>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.79  E-value=3.9e-06  Score=66.59  Aligned_cols=43  Identities=30%  Similarity=0.407  Sum_probs=33.3

Q ss_pred             ccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945          154 TVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFR  198 (206)
Q Consensus       154 ~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~  198 (206)
                      .++....++++...+..++  +++|+|++|+|||||++.|.+...
T Consensus        22 ~~~~~~il~~is~~i~~Ge--~~~l~G~nGsGKSTLl~~l~Gl~~   64 (269)
T PRK14259         22 SYGTFEAVKNVFCDIPRGK--VTALIGPSGCGKSTVLRSLNRMND   64 (269)
T ss_pred             EECCEEEEcceEEEEcCCC--EEEEECCCCCCHHHHHHHHhcccc
Confidence            3443335566666666788  999999999999999999998754

>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]

Probab=97.79  E-value=8.7e-06  Score=60.22  Aligned_cols=43  Identities=26%  Similarity=0.425  Sum_probs=34.9

Q ss_pred             HHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          159 SIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       159 ~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      ..+.++...+..++  .+-|.|+||+|||||.+.|.+-.++.+|+
T Consensus        16 ~lf~~L~f~l~~Ge--~~~i~G~NG~GKTtLLRilaGLl~p~~G~   58 (209)
T COG4133          16 TLFSDLSFTLNAGE--ALQITGPNGAGKTTLLRILAGLLRPDAGE   58 (209)
T ss_pred             eeecceeEEEcCCC--EEEEECCCCCcHHHHHHHHHcccCCCCCe
Confidence            34455666666788  89999999999999999999988876664

>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein

Probab=97.79  E-value=4.9e-06  Score=68.23  Aligned_cols=42  Identities=26%  Similarity=0.382  Sum_probs=34.5

Q ss_pred             HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      .++++...+..++  +++|+|++|+|||||++.|.+-.++.+|.
T Consensus        20 ~L~~vsl~i~~Ge--i~gIiG~sGaGKSTLlr~I~gl~~p~~G~   61 (343)
T TIGR02314        20 ALNNVSLHVPAGQ--IYGVIGASGAGKSTLIRCVNLLERPTSGS   61 (343)
T ss_pred             EEeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhcCCCCCceE
Confidence            4555555666777  99999999999999999999988776564

Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.

>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=97.79  E-value=1.7e-05  Score=63.13  Aligned_cols=42  Identities=24%  Similarity=0.386  Sum_probs=34.7

Q ss_pred             HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      .++++...+..++  +++|+|++|+|||||++.|.+...+.+|.
T Consensus        17 ~l~~vsl~i~~Ge--~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~   58 (275)
T PRK13639         17 ALKGINFKAEKGE--MVALLGPNGAGKSTLFLHFNGILKPTSGE   58 (275)
T ss_pred             eeeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCccE
Confidence            4556666677788  99999999999999999999987765554

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=97.77  E-value=4.5e-06  Score=72.13  Aligned_cols=50  Identities=28%  Similarity=0.371  Sum_probs=38.1

Q ss_pred             CCccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          152 GKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      +..||....++++...+..++  +++|+|++|+|||||++.|.+-..+.+|.
T Consensus        12 ~~~~~~~~il~~vs~~i~~Ge--~~~liG~nGsGKSTLl~~i~Gl~~p~~G~   61 (510)
T PRK09700         12 GKSFGPVHALKSVNLTVYPGE--IHALLGENGAGKSTLMKVLSGIHEPTKGT   61 (510)
T ss_pred             EEEcCCeEEeeeeeEEEcCCc--EEEEECCCCCCHHHHHHHHcCCcCCCccE
Confidence            334443345666766777788  99999999999999999999987665453

>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.77  E-value=5.1e-06  Score=65.25  Aligned_cols=43  Identities=33%  Similarity=0.450  Sum_probs=33.9

Q ss_pred             cchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcC
Q 037945          155 VGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRD  199 (206)
Q Consensus       155 ~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~  199 (206)
                      ++....++++...+..++  +++|+|++|+|||||++.+.+...+
T Consensus        14 ~~~~~~l~~is~~i~~Ge--~~~l~G~nGsGKSTLl~~l~G~~~~   56 (253)
T PRK14267         14 YGSNHVIKGVDLKIPQNG--VFALMGPSGCGKSTLLRTFNRLLEL   56 (253)
T ss_pred             eCCeeeeecceEEEcCCC--EEEEECCCCCCHHHHHHHHhccCCc
Confidence            333335566666677788  9999999999999999999987654

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=97.77  E-value=5.5e-06  Score=72.28  Aligned_cols=43  Identities=23%  Similarity=0.419  Sum_probs=35.7

Q ss_pred             HHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          159 SIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       159 ~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      ..++++...+..++  +++|+|++|+|||||++.|++...+.+|.
T Consensus        19 ~il~~is~~i~~Ge--~~~liG~NGsGKSTLl~~i~G~~~p~~G~   61 (552)
T TIGR03719        19 EILKDISLSFFPGA--KIGVLGLNGAGKSTLLRIMAGVDKEFNGE   61 (552)
T ss_pred             eeecCceEEECCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCce
Confidence            35666766777788  99999999999999999999987766564

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=97.77  E-value=8e-06  Score=64.90  Aligned_cols=42  Identities=21%  Similarity=0.354  Sum_probs=34.0

Q ss_pred             HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      .++++...+..++  +++|+|++|+|||||++.+.+...+.+|.
T Consensus        24 il~~isl~i~~Ge--~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~   65 (271)
T PRK13632         24 ALKNVSFEINEGE--YVAILGHNGSGKSTISKILTGLLKPQSGE   65 (271)
T ss_pred             ceeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCce
Confidence            4555555666778  99999999999999999999987765553

>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=97.77  E-value=1e-06  Score=67.58  Aligned_cols=50  Identities=24%  Similarity=0.408  Sum_probs=38.6

Q ss_pred             CCccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          152 GKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      ++.+|.-..++++...+..++  +++++||||.|||||.+.|-+..+|++|.
T Consensus        11 ~k~FGGl~Al~~Vsl~v~~Ge--i~~LIGPNGAGKTTlfNlitG~~~P~~G~   60 (250)
T COG0411          11 SKRFGGLTAVNDVSLEVRPGE--IVGLIGPNGAGKTTLFNLITGFYKPSSGT   60 (250)
T ss_pred             eeecCCEEEEeceeEEEcCCe--EEEEECCCCCCceeeeeeecccccCCCce
Confidence            344454445555666666777  99999999999999999999998887654

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=97.77  E-value=4.7e-06  Score=72.73  Aligned_cols=48  Identities=19%  Similarity=0.351  Sum_probs=37.6

Q ss_pred             ccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          154 TVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       154 ~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      .++....++++...+..++  +++|+|++|+|||||++.+++...+.+|.
T Consensus       331 ~~~~~~~l~~isl~i~~Ge--~~~l~G~NGsGKSTLl~~l~G~~~p~~G~  378 (552)
T TIGR03719       331 GFGDKLLIDDLSFKLPPGG--IVGVIGPNGAGKSTLFRMITGQEQPDSGT  378 (552)
T ss_pred             EECCeeeeccceEEEcCCC--EEEEECCCCCCHHHHHHHHcCCCCCCCeE
Confidence            3444446666766677788  99999999999999999999987765553

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional

Probab=97.77  E-value=2e-05  Score=62.36  Aligned_cols=37  Identities=30%  Similarity=0.408  Sum_probs=30.2

Q ss_pred             HHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCC
Q 037945          164 VWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEH  202 (206)
Q Consensus       164 l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~  202 (206)
                      +...+..++  +++|+|++|+|||||++.+.+...+.+|
T Consensus        43 is~~i~~Ge--~~~liG~NGsGKSTLlk~L~Gl~~p~~G   79 (264)
T PRK13546         43 ISLKAYEGD--VIGLVGINGSGKSTLSNIIGGSLSPTVG   79 (264)
T ss_pred             eEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCcCCCce
Confidence            333455677  9999999999999999999998776555

>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1)

Probab=97.76  E-value=1e-05  Score=61.56  Aligned_cols=42  Identities=26%  Similarity=0.369  Sum_probs=33.9

Q ss_pred             HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      .++++...+..++  +++|+|++|+|||||++.+.+...+.+|.
T Consensus        23 ~l~~isl~i~~G~--~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~   64 (207)
T cd03369          23 VLKNVSFKVKAGE--KIGIVGRTGAGKSTLILALFRFLEAEEGK   64 (207)
T ss_pred             cccCceEEECCCC--EEEEECCCCCCHHHHHHHHhcccCCCCCe
Confidence            4556655666778  99999999999999999999987665553

NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.

>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.76  E-value=3.5e-06  Score=66.07  Aligned_cols=35  Identities=29%  Similarity=0.504  Sum_probs=28.3

Q ss_pred             HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhh
Q 037945          160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNK  196 (206)
Q Consensus       160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~  196 (206)
                      .++++...+..++  +++|+|++|+|||||++.|.+-
T Consensus        18 ~l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~i~Gl   52 (250)
T PRK14245         18 ALKGISMEIEEKS--VVAFIGPSGCGKSTFLRLFNRM   52 (250)
T ss_pred             EEeeeeEEEeCCC--EEEEECCCCCCHHHHHHHHhhh
Confidence            3445555566678  9999999999999999999864

>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional

Probab=97.76  E-value=4.9e-06  Score=65.77  Aligned_cols=44  Identities=25%  Similarity=0.368  Sum_probs=34.2

Q ss_pred             cchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCC
Q 037945          155 VGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDT  200 (206)
Q Consensus       155 ~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~  200 (206)
                      ++....++++...+..++  +++|+|++|+|||||++.|.+...+.
T Consensus        14 ~~~~~il~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~i~G~~~p~   57 (262)
T PRK09984         14 FNQHQALHAVDLNIHHGE--MVALLGPSGSGKSTLLRHLSGLITGD   57 (262)
T ss_pred             eCCeEEEecceEEEcCCc--EEEEECCCCCCHHHHHHHHhccCCCC
Confidence            333334556666666788  99999999999999999999887653

>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria

Probab=97.76  E-value=2.4e-05  Score=60.75  Aligned_cols=42  Identities=21%  Similarity=0.345  Sum_probs=34.2

Q ss_pred             HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      .++++...+..++  +++|+|++|+|||||++.|.+...+.+|.
T Consensus        16 ~l~~i~~~i~~Ge--~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~   57 (236)
T cd03253          16 VLKDVSFTIPAGK--KVAIVGPSGSGKSTILRLLFRFYDVSSGS   57 (236)
T ss_pred             eeeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhcccCCCCCE
Confidence            4555666667788  99999999999999999999987765553

Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

Probab=97.76  E-value=9.6e-06  Score=63.37  Aligned_cols=42  Identities=26%  Similarity=0.336  Sum_probs=35.2

Q ss_pred             HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      .++++...+..++  ++++||.+|+|||||++.|.+-.++++|.
T Consensus        28 avd~Vsf~i~~ge--~~glVGESG~GKSTlgr~i~~L~~pt~G~   69 (268)
T COG4608          28 AVDGVSFSIKEGE--TLGLVGESGCGKSTLGRLILGLEEPTSGE   69 (268)
T ss_pred             EecceeEEEcCCC--EEEEEecCCCCHHHHHHHHHcCcCCCCce
Confidence            4556666777788  99999999999999999999988876553

>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional

Probab=97.76  E-value=0.00012  Score=61.63  Aligned_cols=45  Identities=22%  Similarity=0.254  Sum_probs=38.5

Q ss_pred             CCccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945          152 GKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFR  198 (206)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~  198 (206)
                      ...++.+..++.+...|..+.  -|.+.|++|+||||+|+.++....
T Consensus       175 ~d~~i~e~~le~l~~~L~~~~--~iil~GppGtGKT~lA~~la~~l~  219 (459)
T PRK11331        175 NDLFIPETTIETILKRLTIKK--NIILQGPPGVGKTFVARRLAYLLT  219 (459)
T ss_pred             hcccCCHHHHHHHHHHHhcCC--CEEEECCCCCCHHHHHHHHHHHhc
Confidence            456777888999999998777  788899999999999999987653

>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional

Probab=97.76  E-value=3.9e-06  Score=69.10  Aligned_cols=49  Identities=29%  Similarity=0.436  Sum_probs=36.9

Q ss_pred             CccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          153 KTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       153 ~~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      ..+|....++++...+..++  +++|+|++|+|||||++.|.+-..+.+|.
T Consensus        14 ~~~~~~~~l~~isl~i~~Ge--~~~llGpsGsGKSTLLr~IaGl~~p~~G~   62 (351)
T PRK11432         14 KRFGSNTVIDNLNLTIKQGT--MVTLLGPSGCGKTTVLRLVAGLEKPTEGQ   62 (351)
T ss_pred             EEECCeEEEeeeEEEEcCCC--EEEEECCCCCcHHHHHHHHHCCCCCCceE
Confidence            34443334555555666677  99999999999999999999988776554

>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=97.75  E-value=2.2e-05  Score=62.61  Aligned_cols=42  Identities=21%  Similarity=0.377  Sum_probs=34.8

Q ss_pred             HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      .++++...+..++  +++|+|++|+|||||++.|.+...+.+|.
T Consensus        19 ~l~~vsl~i~~Ge--~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~   60 (277)
T PRK13652         19 ALNNINFIAPRNS--RIAVIGPNGAGKSTLFRHFNGILKPTSGS   60 (277)
T ss_pred             eeeEeEEEEcCCC--EEEEECCCCCCHHHHHHHHhcCCCCCceE
Confidence            4556666667788  99999999999999999999987776564

>PRK14241 phosphate transporter ATP-binding protein; Provisional

Probab=97.75  E-value=4.9e-06  Score=65.61  Aligned_cols=37  Identities=32%  Similarity=0.493  Sum_probs=30.9

Q ss_pred             HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945          160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFR  198 (206)
Q Consensus       160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~  198 (206)
                      .++++...+..++  +++|+|++|+|||||++.+.+...
T Consensus        19 ~l~~isl~i~~Ge--~~~i~G~nGsGKSTLl~~laGl~~   55 (258)
T PRK14241         19 AVEDVNLNIEPRS--VTAFIGPSGCGKSTVLRTLNRMHE   55 (258)
T ss_pred             eeeeeeEEEcCCc--EEEEECCCCCCHHHHHHHHhccCC
Confidence            4555656666788  999999999999999999999765

>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=97.75  E-value=2.3e-05  Score=62.84  Aligned_cols=42  Identities=17%  Similarity=0.263  Sum_probs=33.6

Q ss_pred             HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      .++++...+..++  +++|+|++|+|||||++.|.+...+.+|.
T Consensus        26 il~~is~~i~~Ge--~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~   67 (289)
T PRK13645         26 ALNNTSLTFKKNK--VTCVIGTTGSGKSTMIQLTNGLIISETGQ   67 (289)
T ss_pred             eeeeeEEEEeCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCce
Confidence            4455555566677  99999999999999999999987765553

>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=97.75  E-value=2.1e-05  Score=63.05  Aligned_cols=42  Identities=36%  Similarity=0.533  Sum_probs=34.3

Q ss_pred             HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      .++++...+..++  +++|+|++|+|||||++.+.+-..+.+|.
T Consensus        22 ~l~~vs~~i~~Ge--~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~   63 (287)
T PRK13637         22 ALDNVNIEIEDGE--FVGLIGHTGSGKSTLIQHLNGLLKPTSGK   63 (287)
T ss_pred             eeeeeEEEEcCCC--EEEEECCCCCcHHHHHHHHhcCCCCCccE
Confidence            4555555666788  99999999999999999999987776564

>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=97.75  E-value=2.2e-05  Score=62.50  Aligned_cols=42  Identities=29%  Similarity=0.445  Sum_probs=35.3

Q ss_pred             HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      .+.++...+..++  +++|+|++|+|||||++.+++...+.+|.
T Consensus        17 ~l~~vsl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~   58 (274)
T PRK13644         17 ALENINLVIKKGE--YIGIIGKNGSGKSTLALHLNGLLRPQKGK   58 (274)
T ss_pred             eeeeeEEEEeCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCce
Confidence            5566666777888  99999999999999999999987776554

>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional

Probab=97.75  E-value=8.4e-06  Score=64.69  Aligned_cols=42  Identities=21%  Similarity=0.364  Sum_probs=34.1

Q ss_pred             HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      .++++...+.+++  +++|+|++|+|||||++.|.+...+.+|.
T Consensus        27 il~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~   68 (268)
T PRK10419         27 VLNNVSLSLKSGE--TVALLGRSGCGKSTLARLLVGLESPSQGN   68 (268)
T ss_pred             eEeceeEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCcE
Confidence            4555666666777  99999999999999999999987766554

>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional

Probab=97.75  E-value=6.9e-06  Score=65.32  Aligned_cols=39  Identities=36%  Similarity=0.501  Sum_probs=31.9

Q ss_pred             HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCC
Q 037945          160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDT  200 (206)
Q Consensus       160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~  200 (206)
                      .++++...+..++  +++|+|++|+|||||++.|.+...+.
T Consensus        16 il~~vsl~i~~Ge--~~~l~G~nGsGKSTLl~~laG~~~p~   54 (272)
T PRK13547         16 ILRDLSLRIEPGR--VTALLGRNGAGKSTLLKALAGDLTGG   54 (272)
T ss_pred             EEecceEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCc
Confidence            4555655666777  99999999999999999999987653

>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=97.75  E-value=2.3e-05  Score=62.78  Aligned_cols=42  Identities=26%  Similarity=0.396  Sum_probs=34.4

Q ss_pred             HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      .++++...+..++  +++|+|++|+|||||++.+++...+.+|.
T Consensus        22 ~l~~vsl~i~~Ge--~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~   63 (286)
T PRK13646         22 AIHDVNTEFEQGK--YYAIVGQTGSGKSTLIQNINALLKPTTGT   63 (286)
T ss_pred             ceeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCcE
Confidence            4555656666788  99999999999999999999987776553

>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=97.74  E-value=2.2e-05  Score=62.30  Aligned_cols=41  Identities=20%  Similarity=0.190  Sum_probs=33.3

Q ss_pred             HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCC
Q 037945          160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEH  202 (206)
Q Consensus       160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~  202 (206)
                      .++++...+..++  +++|+|++|+|||||++.|.+-..+.+|
T Consensus        24 ~l~~isl~i~~Ge--~~~I~G~nGsGKSTLl~~i~Gl~~~~~G   64 (269)
T PRK13648         24 TLKDVSFNIPKGQ--WTSIVGHNGSGKSTIAKLMIGIEKVKSG   64 (269)
T ss_pred             ceeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhcCCCCCce
Confidence            4455555566788  9999999999999999999998776555

>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional

Probab=97.74  E-value=2.1e-05  Score=64.61  Aligned_cols=42  Identities=29%  Similarity=0.406  Sum_probs=33.9

Q ss_pred             HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      .++++...+..++  +++|+|++|+|||||++.+.+-..+.+|.
T Consensus        20 il~~vsl~i~~Ge--i~~iiG~nGsGKSTLlk~L~Gl~~p~~G~   61 (343)
T PRK11153         20 ALNNVSLHIPAGE--IFGVIGASGAGKSTLIRCINLLERPTSGR   61 (343)
T ss_pred             EEEeeEEEEcCCC--EEEEECCCCCcHHHHHHHHhCCCCCCceE
Confidence            3455555666788  99999999999999999999987776553

>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.74  E-value=5.4e-06  Score=65.99  Aligned_cols=44  Identities=27%  Similarity=0.295  Sum_probs=33.6

Q ss_pred             CCccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          152 GKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      ...++....++++...+..++  +++|+|++|+|||||++.|.+-.
T Consensus        27 ~~~~~~~~~l~~vs~~i~~Ge--~~~IiG~nGsGKSTLl~~l~Gl~   70 (274)
T PRK14265         27 KVFYGGFLALVDVHLKIPAKK--IIAFIGPSGCGKSTLLRCFNRMN   70 (274)
T ss_pred             EEEeCCeEEEeeeeeEEcCCC--EEEEECCCCCCHHHHHHHHhccc
Confidence            334443335566666666788  99999999999999999999764

>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors

Probab=97.74  E-value=1.1e-05  Score=62.29  Aligned_cols=37  Identities=32%  Similarity=0.578  Sum_probs=30.5

Q ss_pred             HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945          160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFR  198 (206)
Q Consensus       160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~  198 (206)
                      .++++...+..++  +++|+|++|+|||||++.+.+...
T Consensus        22 ~l~~vsl~i~~Ge--~~~l~G~nGsGKSTLlk~l~G~~~   58 (226)
T cd03234          22 ILNDVSLHVESGQ--VMAILGSSGSGKTTLLDAISGRVE   58 (226)
T ss_pred             cccCceEEEcCCe--EEEEECCCCCCHHHHHHHHhCccC
Confidence            4555555566677  999999999999999999998876

The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in

>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.74  E-value=7e-06  Score=64.38  Aligned_cols=37  Identities=32%  Similarity=0.499  Sum_probs=31.2

Q ss_pred             HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945          160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFR  198 (206)
Q Consensus       160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~  198 (206)
                      .++++...+..++  +++|+|++|+|||||++.|.+...
T Consensus        18 ~l~~is~~i~~Ge--~~~i~G~nGsGKSTLl~~i~G~~~   54 (250)
T PRK14247         18 VLDGVNLEIPDNT--ITALMGPSGSGKSTLLRVFNRLIE   54 (250)
T ss_pred             eeecceeEEcCCC--EEEEECCCCCCHHHHHHHHhccCC
Confidence            4556666667788  999999999999999999998765

>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1

Probab=97.74  E-value=9.8e-06  Score=64.76  Aligned_cols=42  Identities=24%  Similarity=0.399  Sum_probs=33.8

Q ss_pred             HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      .++++...+..++  +++|+|++|+|||||++.|++...+.+|+
T Consensus        52 vL~~vs~~i~~Ge--~~~liG~NGsGKSTLl~~I~Gl~~p~~G~   93 (282)
T cd03291          52 VLKNINLKIEKGE--MLAITGSTGSGKTSLLMLILGELEPSEGK   93 (282)
T ss_pred             ceeeeeEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCcE
Confidence            4555555566677  99999999999999999999987776553

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=97.73  E-value=2.4e-05  Score=62.42  Aligned_cols=42  Identities=24%  Similarity=0.317  Sum_probs=34.4

Q ss_pred             HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      .++++...+..++  +++|+|++|+|||||++.|.+...+.+|.
T Consensus        22 ~l~~vsl~i~~Ge--~~~i~G~nGaGKSTLl~~i~G~~~p~~G~   63 (279)
T PRK13635         22 ALKDVSFSVYEGE--WVAIVGHNGSGKSTLAKLLNGLLLPEAGT   63 (279)
T ss_pred             ceeeeEEEEcCCC--EEEEECCCCCcHHHHHHHHhcCCCCCCcE
Confidence            4555555566778  99999999999999999999988776664

>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional

Probab=97.73  E-value=5.7e-06  Score=68.62  Aligned_cols=42  Identities=26%  Similarity=0.316  Sum_probs=33.3

Q ss_pred             HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      .++++...+..++  +++|+|++|+|||||++.|.+...+.+|.
T Consensus        18 vl~~vsl~i~~Ge--~~~l~G~nGsGKSTLL~~iaGl~~p~~G~   59 (369)
T PRK11000         18 ISKDINLDIHEGE--FVVFVGPSGCGKSTLLRMIAGLEDITSGD   59 (369)
T ss_pred             EEeeeEEEEcCCC--EEEEECCCCCcHHHHHHHHhCCCCCCceE
Confidence            3445555566677  99999999999999999999987776553

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=97.73  E-value=5.1e-06  Score=71.64  Aligned_cols=48  Identities=25%  Similarity=0.292  Sum_probs=36.5

Q ss_pred             ccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          154 TVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       154 ~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      .|+....++++...+..++  +++|+|++|+|||||++.|.+...+.+|.
T Consensus        13 ~~~~~~il~~isl~i~~Ge--~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~   60 (501)
T PRK11288         13 TFPGVKALDDISFDCRAGQ--VHALMGENGAGKSTLLKILSGNYQPDAGS   60 (501)
T ss_pred             EECCEEEEeeeeEEEeCCc--EEEEECCCCCCHHHHHHHHhCCCCCCCCE
Confidence            3443335566666666788  99999999999999999999987665453

>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR)

Probab=97.73  E-value=6.6e-06  Score=62.12  Aligned_cols=42  Identities=21%  Similarity=0.342  Sum_probs=33.7

Q ss_pred             HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhh--cCCCCC
Q 037945          160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKF--RDTEHD  203 (206)
Q Consensus       160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~--~~~~~~  203 (206)
                      .+.++...+..++  +++|+|++|+|||||++.|.+..  .+.+|.
T Consensus        24 ~l~~~~~~i~~Ge--~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~   67 (194)
T cd03213          24 LLKNVSGKAKPGE--LTAIMGPSGAGKSTLLNALAGRRTGLGVSGE   67 (194)
T ss_pred             ceecceEEEcCCc--EEEEECCCCCCHHHHHHHHhCCCCCCCCceE
Confidence            4555555666677  99999999999999999999987  665454

DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.

>PRK11176 lipid transporter ATP-binding/permease protein; Provisional

Probab=97.73  E-value=1.6e-05  Score=69.81  Aligned_cols=42  Identities=21%  Similarity=0.301  Sum_probs=35.8

Q ss_pred             HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      .++++...+..++  .++|+|++|+|||||++.+.+...|.+|.
T Consensus       358 il~~i~l~i~~G~--~~aIvG~sGsGKSTLl~ll~gl~~p~~G~  399 (582)
T PRK11176        358 ALRNINFKIPAGK--TVALVGRSGSGKSTIANLLTRFYDIDEGE  399 (582)
T ss_pred             cccCceEEeCCCC--EEEEECCCCCCHHHHHHHHHhccCCCCce
Confidence            5666777777788  99999999999999999999998886564

>PTZ00202 tuzin; Provisional

Probab=97.73  E-value=0.00011  Score=61.59  Aligned_cols=50  Identities=20%  Similarity=0.250  Sum_probs=40.0

Q ss_pred             ccCCCCccchHHHHHHHHHhhhc---CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          148 ERPIGKTVGLDSIISEVWRCIED---HNEKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       148 ~~~~~~~~g~~~~~~~l~~~L~~---~~~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      |.+...++||+.+...+...|.+   +...++.|.|++|+|||||++.+....
T Consensus       258 Pa~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l  310 (550)
T PTZ00202        258 PAVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKE  310 (550)
T ss_pred             CCCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcC
Confidence            33446689999999999888864   234589999999999999999988654

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=97.73  E-value=1.2e-05  Score=69.61  Aligned_cols=42  Identities=17%  Similarity=0.308  Sum_probs=33.7

Q ss_pred             HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      .++++...+..++  +++|+|++|+|||||++.|.+...+.+|.
T Consensus       278 ~l~~isl~i~~Ge--~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~  319 (510)
T PRK09700        278 KVRDISFSVCRGE--ILGFAGLVGSGRTELMNCLFGVDKRAGGE  319 (510)
T ss_pred             cccceeEEEcCCc--EEEEECCCCCCHHHHHHHHhCCCcCCCCe
Confidence            4555655566678  99999999999999999999987665554

>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.73  E-value=4.9e-06  Score=65.62  Aligned_cols=37  Identities=27%  Similarity=0.479  Sum_probs=29.4

Q ss_pred             HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945          160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFR  198 (206)
Q Consensus       160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~  198 (206)
                      .+.++...+..++  +++|+|++|+|||||++.|.+...
T Consensus        27 ~l~~vs~~i~~Ge--~~~l~G~nGsGKSTLl~~l~G~~~   63 (259)
T PRK14274         27 ALKNINLSIPENE--VTAIIGPSGCGKSTFIKTLNLMIQ   63 (259)
T ss_pred             eEEeeEEEEcCCC--EEEEECCCCCCHHHHHHHHHhhcc
Confidence            3444444555677  999999999999999999998754

>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.72  E-value=8.5e-06  Score=63.84  Aligned_cols=39  Identities=31%  Similarity=0.343  Sum_probs=32.1

Q ss_pred             HHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcC
Q 037945          159 SIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRD  199 (206)
Q Consensus       159 ~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~  199 (206)
                      ..++++...+..++  +++|+|++|+|||||++.|.+...+
T Consensus        17 ~~l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~   55 (249)
T PRK14253         17 QALKSINLPIPARQ--VTALIGPSGCGKSTLLRCLNRMNDL   55 (249)
T ss_pred             eeeecceEEecCCC--EEEEECCCCCCHHHHHHHHHhhccc
Confidence            34556666667788  9999999999999999999987654

>PRK13409 putative ATPase RIL; Provisional

Probab=97.72  E-value=2.7e-05  Score=68.39  Aligned_cols=49  Identities=24%  Similarity=0.382  Sum_probs=37.8

Q ss_pred             CccchH-HHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCCC
Q 037945          153 KTVGLD-SIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHDF  204 (206)
Q Consensus       153 ~~~g~~-~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~F  204 (206)
                      ..||.. ..+.++. .+..++  +++|+|+||+|||||++.+.+...+..|.+
T Consensus        81 ~~yg~~~~~L~~l~-~i~~Ge--v~gLvG~NGaGKSTLlkiL~G~l~p~~G~i  130 (590)
T PRK13409         81 HRYGVNGFKLYGLP-IPKEGK--VTGILGPNGIGKTTAVKILSGELIPNLGDY  130 (590)
T ss_pred             EEecCCceeEecCC-cCCCCC--EEEEECCCCCCHHHHHHHHhCCccCCCccc
Confidence            345542 2455565 566678  999999999999999999999888776764

>PRK13651 cobalt transporter ATP-binding subunit; Provisional

Probab=97.72  E-value=2.6e-05  Score=63.00  Aligned_cols=42  Identities=26%  Similarity=0.358  Sum_probs=34.3

Q ss_pred             HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      .++++...+..++  +++|+|++|+|||||++.|.+...+.+|.
T Consensus        22 ~l~~vsl~i~~Ge--~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~   63 (305)
T PRK13651         22 ALDNVSVEINQGE--FIAIIGQTGSGKTTFIEHLNALLLPDTGT   63 (305)
T ss_pred             ceeeeEEEEeCCC--EEEEECCCCCcHHHHHHHHhCCCCCCCcE
Confidence            4555555666788  99999999999999999999988776554

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=97.72  E-value=7.5e-06  Score=71.51  Aligned_cols=48  Identities=21%  Similarity=0.393  Sum_probs=38.0

Q ss_pred             ccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          154 TVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       154 ~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      .||....++++...+..++  +++|+|++|+|||||++.|++...+.+|.
T Consensus       333 ~~~~~~~l~~isl~i~~Ge--~~~l~G~NGsGKSTLl~~i~G~~~p~~G~  380 (556)
T PRK11819        333 SFGDRLLIDDLSFSLPPGG--IVGIIGPNGAGKSTLFKMITGQEQPDSGT  380 (556)
T ss_pred             EECCeeeecceeEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCeE
Confidence            3444446677777777788  99999999999999999999987765553

>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=97.72  E-value=2.7e-05  Score=62.42  Aligned_cols=42  Identities=29%  Similarity=0.389  Sum_probs=34.4

Q ss_pred             HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      .++++...+..++  +++|+|++|+|||||++.+.+...+.+|.
T Consensus        21 ~l~~vsl~i~~Ge--~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~   62 (288)
T PRK13643         21 ALFDIDLEVKKGS--YTALIGHTGSGKSTLLQHLNGLLQPTEGK   62 (288)
T ss_pred             ceeeeEEEEcCCC--EEEEECCCCChHHHHHHHHhcCCCCCCcE
Confidence            4555556666788  99999999999999999999988776553

>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed

Probab=97.72  E-value=7.1e-06  Score=64.23  Aligned_cols=41  Identities=24%  Similarity=0.259  Sum_probs=31.7

Q ss_pred             HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhh--cCCCC
Q 037945          160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKF--RDTEH  202 (206)
Q Consensus       160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~--~~~~~  202 (206)
                      .+.++...+..++  +++|+|++|+|||||++.|.+..  .+.+|
T Consensus        16 ~l~~isl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G   58 (248)
T PRK09580         16 ILRGLNLEVRPGE--VHAIMGPNGSGKSTLSATLAGREDYEVTGG   58 (248)
T ss_pred             eeecceeEEcCCC--EEEEECCCCCCHHHHHHHHcCCccCCCCce
Confidence            4455555566677  99999999999999999999973  34445

>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA

Probab=97.72  E-value=2.4e-05  Score=63.11  Aligned_cols=42  Identities=21%  Similarity=0.351  Sum_probs=34.1

Q ss_pred             HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      .++++...+..++  +++|+|++|+|||||++.+.+...+.+|.
T Consensus        17 ~l~~is~~i~~Ge--i~~l~G~NGaGKTTLl~~l~Gl~~~~~G~   58 (301)
T TIGR03522        17 ALDEVSFEAQKGR--IVGFLGPNGAGKSTTMKIITGYLPPDSGS   58 (301)
T ss_pred             EEEEeEEEEeCCe--EEEEECCCCCCHHHHHHHHhCCCCCCceE
Confidence            4555555666778  99999999999999999999987776553

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.

>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional

Probab=97.71  E-value=1.2e-05  Score=63.24  Aligned_cols=38  Identities=18%  Similarity=0.225  Sum_probs=31.3

Q ss_pred             HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcC
Q 037945          160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRD  199 (206)
Q Consensus       160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~  199 (206)
                      .++++...+..++  +++|+|++|+|||||++.|.+...+
T Consensus        18 il~~vsl~i~~Ge--~~~l~G~nGsGKSTLl~~l~Gl~~~   55 (254)
T PRK10418         18 LVHGVSLTLQRGR--VLALVGGSGSGKSLTCAAALGILPA   55 (254)
T ss_pred             eecceEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCC
Confidence            4455555566678  9999999999999999999998765

>PRK14235 phosphate transporter ATP-binding protein; Provisional

Probab=97.71  E-value=3.7e-06  Score=66.65  Aligned_cols=37  Identities=30%  Similarity=0.369  Sum_probs=30.2

Q ss_pred             HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945          160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFR  198 (206)
Q Consensus       160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~  198 (206)
                      .++++...+..++  +++|+|++|+|||||++.|.+...
T Consensus        34 il~~isl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~   70 (267)
T PRK14235         34 ALFDVDLDIPEKT--VTAFIGPSGCGKSTFLRCLNRMND   70 (267)
T ss_pred             EEEEEEEEEcCCC--EEEEECCCCCCHHHHHHHHHhhcc
Confidence            4445555566677  999999999999999999999764

>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed

Probab=97.71  E-value=5.5e-05  Score=61.77  Aligned_cols=47  Identities=28%  Similarity=0.400  Sum_probs=37.9

Q ss_pred             CCccchHHHHHHHHHhhhc-----CCCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945          152 GKTVGLDSIISEVWRCIED-----HNEKVIGLYGMGGVGKTTLLKKLNNKFR  198 (206)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~-----~~~~vI~IvG~~G~GKTTLa~~i~~~~~  198 (206)
                      ..++|++..++.+...+..     .....+-++|++|+||||||+.+.+...
T Consensus        25 ~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~   76 (328)
T PRK00080         25 DEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMG   76 (328)
T ss_pred             HHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhC
Confidence            4589999888888776652     3355788999999999999999988753

>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=97.70  E-value=2.4e-05  Score=62.78  Aligned_cols=42  Identities=29%  Similarity=0.419  Sum_probs=33.9

Q ss_pred             HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      .++++...+..++  +++|+|++|+|||||++.+.+...+.+|.
T Consensus        22 ~L~~vsl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~   63 (290)
T PRK13634         22 ALYDVNVSIPSGS--YVAIIGHTGSGKSTLLQHLNGLLQPTSGT   63 (290)
T ss_pred             ceeeEEEEEcCCC--EEEEECCCCCcHHHHHHHHhcCCCCCCcE
Confidence            4455555566788  99999999999999999999987776554

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.70  E-value=2.1e-05  Score=59.45  Aligned_cols=45  Identities=31%  Similarity=0.427  Sum_probs=36.9

Q ss_pred             cCCCCccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHh
Q 037945          149 RPIGKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNN  195 (206)
Q Consensus       149 ~~~~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~  195 (206)
                      .+....||....++++.-.+..+.  |.+++||+|+|||||.+.+..
T Consensus        11 ~~l~~yYg~~~aL~~i~l~i~~~~--VTAlIGPSGcGKST~LR~lNR   55 (253)
T COG1117          11 RDLNLYYGDKHALKDINLDIPKNK--VTALIGPSGCGKSTLLRCLNR   55 (253)
T ss_pred             cceeEEECchhhhccCceeccCCc--eEEEECCCCcCHHHHHHHHHh
Confidence            344567888878888877777777  999999999999999998764

>PRK14237 phosphate transporter ATP-binding protein; Provisional

Probab=97.70  E-value=6.9e-06  Score=65.13  Aligned_cols=45  Identities=27%  Similarity=0.319  Sum_probs=33.9

Q ss_pred             CCccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945          152 GKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFR  198 (206)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~  198 (206)
                      ...++....++++...+..++  +++|+|++|+|||||++.+++...
T Consensus        27 ~~~~~~~~il~~vsl~i~~Ge--~~~I~G~nGsGKSTLl~~l~Gl~~   71 (267)
T PRK14237         27 HVYYGKKEAIKGIDMQFEKNK--ITALIGPSGSGKSTYLRSLNRMND   71 (267)
T ss_pred             EEEECCeeeEeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHHhccC
Confidence            333443334555656666788  999999999999999999999764

>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]

Probab=97.70  E-value=5.6e-05  Score=62.09  Aligned_cols=48  Identities=25%  Similarity=0.442  Sum_probs=34.9

Q ss_pred             CCCccchHHHHH---HHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945          151 IGKTVGLDSIIS---EVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFR  198 (206)
Q Consensus       151 ~~~~~g~~~~~~---~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~  198 (206)
                      ...++|.+-.+.   -|-..+..+.+...-.|||+|+||||||+.|.+...
T Consensus        23 lde~vGQ~HLlg~~~~lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~~   73 (436)
T COG2256          23 LDEVVGQEHLLGEGKPLRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTTN   73 (436)
T ss_pred             HHHhcChHhhhCCCchHHHHHhcCCCceeEEECCCCCCHHHHHHHHHHhhC
Confidence            345666554332   233445567888899999999999999999988653

>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein

Probab=97.70  E-value=3.6e-06  Score=69.33  Aligned_cols=41  Identities=27%  Similarity=0.416  Sum_probs=32.4

Q ss_pred             HHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          161 ISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       161 ~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      ++++...+.+++  +++|+|++|+|||||.+.|.+...+.+|.
T Consensus        20 l~~vs~~i~~Ge--~~~l~GpsGsGKSTLLr~iaGl~~p~~G~   60 (353)
T TIGR03265        20 LKDISLSVKKGE--FVCLLGPSGCGKTTLLRIIAGLERQTAGT   60 (353)
T ss_pred             EEeeEEEEcCCC--EEEEECCCCCCHHHHHHHHHCCCCCCceE
Confidence            334444455677  99999999999999999999988776553

This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.

>CHL00131 ycf16 sulfate ABC transporter protein; Validated

Probab=97.69  E-value=1.3e-05  Score=62.83  Aligned_cols=35  Identities=26%  Similarity=0.401  Sum_probs=29.8

Q ss_pred             HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhh
Q 037945          160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNK  196 (206)
Q Consensus       160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~  196 (206)
                      .+.++...+..++  +++|+|++|+|||||++.|.+.
T Consensus        22 ~l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~i~Gl   56 (252)
T CHL00131         22 ILKGLNLSINKGE--IHAIMGPNGSGKSTLSKVIAGH   56 (252)
T ss_pred             eeecceeEEcCCc--EEEEECCCCCCHHHHHHHHcCC
Confidence            4556666667788  9999999999999999999985

>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit

Probab=97.69  E-value=1.5e-05  Score=69.24  Aligned_cols=52  Identities=17%  Similarity=0.197  Sum_probs=40.0

Q ss_pred             CCCCccch-HHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          150 PIGKTVGL-DSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       150 ~~~~~~g~-~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      +.+..|+. +..++++...+..++  .++|+|++|+|||||++.+.+..++.+|.
T Consensus       339 ~vsf~Y~~~~~vL~~isl~i~~G~--~vaIvG~SGsGKSTLl~lL~g~~~p~~G~  391 (529)
T TIGR02868       339 DLSFGYPGSPPVLDGVSLDLPPGE--RVAILGPSGSGKSTLLMLLTGLLDPLQGE  391 (529)
T ss_pred             EEEEecCCCCceeecceEEEcCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCcE
Confidence            33444442 235677777777788  99999999999999999999988877664

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.

>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein

Probab=97.69  E-value=1.5e-05  Score=71.26  Aligned_cols=53  Identities=23%  Similarity=0.193  Sum_probs=40.6

Q ss_pred             cCCCCccc--hHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          149 RPIGKTVG--LDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       149 ~~~~~~~g--~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      .+.+..|+  ....++++...+..++  .++|+|++|+|||||++.+.+...|.+|.
T Consensus       455 ~nvsf~Y~~~~~~vL~~isl~i~~Ge--~vaIvG~sGsGKSTLlklL~gl~~p~~G~  509 (686)
T TIGR03797       455 DRVTFRYRPDGPLILDDVSLQIEPGE--FVAIVGPSGSGKSTLLRLLLGFETPESGS  509 (686)
T ss_pred             EEEEEEcCCCCccceeeeEEEECCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCCE
Confidence            33444453  2346777777777788  99999999999999999999988876564

Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif

>PRK14239 phosphate transporter ATP-binding protein; Provisional

Probab=97.69  E-value=7.8e-06  Score=64.16  Aligned_cols=35  Identities=29%  Similarity=0.421  Sum_probs=29.0

Q ss_pred             HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhh
Q 037945          160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNK  196 (206)
Q Consensus       160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~  196 (206)
                      .++++...+..++  +++|+|++|+|||||++.|.+-
T Consensus        20 ~l~~~s~~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl   54 (252)
T PRK14239         20 ALNSVSLDFYPNE--ITALIGPSGSGKSTLLRSINRM   54 (252)
T ss_pred             eeeeeeEEEcCCc--EEEEECCCCCCHHHHHHHHhcc
Confidence            4555555566777  9999999999999999999875

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=97.69  E-value=7.3e-06  Score=70.79  Aligned_cols=46  Identities=28%  Similarity=0.417  Sum_probs=36.1

Q ss_pred             CCccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcC
Q 037945          152 GKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRD  199 (206)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~  199 (206)
                      +..||....++++...+..++  +++|+|++|+|||||++.|.+...+
T Consensus        12 ~~~~~~~~il~~isl~i~~Ge--~~~l~G~nGsGKSTLl~~l~Gl~~~   57 (506)
T PRK13549         12 TKTFGGVKALDNVSLKVRAGE--IVSLCGENGAGKSTLMKVLSGVYPH   57 (506)
T ss_pred             EEEeCCeEeecceeEEEeCCe--EEEEECCCCCCHHHHHHHHhCCCCC
Confidence            334554445666777777788  9999999999999999999997664

>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed

Probab=97.69  E-value=4.6e-06  Score=69.23  Aligned_cols=50  Identities=24%  Similarity=0.294  Sum_probs=36.8

Q ss_pred             CCccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          152 GKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      ...+|....++++...+..++  +++|+|++|+|||||++.|.+...+.+|.
T Consensus        21 ~~~~~~~~~l~~vsl~i~~Ge--~~~LlGpsGsGKSTLLr~IaGl~~p~~G~   70 (375)
T PRK09452         21 SKSFDGKEVISNLDLTINNGE--FLTLLGPSGCGKTTVLRLIAGFETPDSGR   70 (375)
T ss_pred             EEEECCeEEEeeeEEEEeCCC--EEEEECCCCCcHHHHHHHHhCCCCCCceE
Confidence            334443334445555566677  99999999999999999999988776553

>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed

Probab=97.69  E-value=3.9e-06  Score=70.14  Aligned_cols=47  Identities=30%  Similarity=0.509  Sum_probs=35.6

Q ss_pred             cchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          155 VGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       155 ~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      ||....++++...+..++  +++|+|+||+|||||++.+.+...+.+|.
T Consensus        13 y~~~~vL~~vs~~i~~Ge--iv~liGpNGaGKSTLLk~LaGll~p~sG~   59 (402)
T PRK09536         13 FGDTTVLDGVDLSVREGS--LVGLVGPNGAGKTTLLRAINGTLTPTAGT   59 (402)
T ss_pred             ECCEEEEEeeEEEECCCC--EEEEECCCCchHHHHHHHHhcCCCCCCcE
Confidence            333334455555566677  99999999999999999999987776553

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=97.68  E-value=1.3e-05  Score=69.32  Aligned_cols=42  Identities=21%  Similarity=0.411  Sum_probs=34.0

Q ss_pred             HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhc-CCCCC
Q 037945          160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFR-DTEHD  203 (206)
Q Consensus       160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~-~~~~~  203 (206)
                      .++++...+..++  +++|+|++|+|||||++.|++... +.+|.
T Consensus       277 vl~~vsl~i~~Ge--~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~  319 (506)
T PRK13549        277 RVDDVSFSLRRGE--ILGIAGLVGAGRTELVQCLFGAYPGRWEGE  319 (506)
T ss_pred             cccceeeEEcCCc--EEEEeCCCCCCHHHHHHHHhCCCCCCCCcE
Confidence            5666666677788  999999999999999999999865 34454

>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.68  E-value=8.1e-06  Score=64.07  Aligned_cols=39  Identities=28%  Similarity=0.354  Sum_probs=32.1

Q ss_pred             HHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcC
Q 037945          159 SIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRD  199 (206)
Q Consensus       159 ~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~  199 (206)
                      ..++++...+..++  +++|+|++|+|||||++.|.+...+
T Consensus        18 ~~l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~i~G~~~~   56 (252)
T PRK14272         18 QAVKNVNLDVQRGT--VNALIGPSGCGKTTFLRAINRMHDL   56 (252)
T ss_pred             EeeccceEEEcCCC--EEEEECCCCCCHHHHHHHHhccCCC
Confidence            35566666667788  9999999999999999999997654

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=97.68  E-value=1.3e-05  Score=69.11  Aligned_cols=42  Identities=24%  Similarity=0.474  Sum_probs=32.7

Q ss_pred             HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      .++++...+..++  +++|+|+||+|||||++.+.+...+.+|.
T Consensus       268 ~l~~isl~i~~Ge--~~~iiG~NGsGKSTLlk~l~G~~~p~~G~  309 (501)
T PRK11288        268 LREPISFSVRAGE--IVGLFGLVGAGRSELMKLLYGATRRTAGQ  309 (501)
T ss_pred             cccceeEEEeCCc--EEEEEcCCCCCHHHHHHHHcCCCcCCCce
Confidence            3455555555677  99999999999999999999887665443

>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family

Probab=97.68  E-value=1.4e-05  Score=61.52  Aligned_cols=41  Identities=27%  Similarity=0.294  Sum_probs=32.8

Q ss_pred             HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCC
Q 037945          160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEH  202 (206)
Q Consensus       160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~  202 (206)
                      .++++...+.+++  +++|+|++|+|||||++.+.+...+.+|
T Consensus        20 il~~vs~~i~~G~--~~~I~G~nGsGKStLl~~l~G~~~~~~G   60 (220)
T TIGR02982        20 VLFDINLEINPGE--IVILTGPSGSGKTTLLTLIGGLRSVQEG   60 (220)
T ss_pred             EEeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCe
Confidence            4455555566677  9999999999999999999998766544

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.

>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional

Probab=97.68  E-value=6.2e-06  Score=68.05  Aligned_cols=42  Identities=31%  Similarity=0.358  Sum_probs=33.4

Q ss_pred             HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      .++++...+..++  +++|+|++|+|||||++.|.+-..+.+|.
T Consensus        19 ~l~~vsl~i~~Ge--~~~llG~sGsGKSTLLr~iaGl~~p~~G~   60 (356)
T PRK11650         19 VIKGIDLDVADGE--FIVLVGPSGCGKSTLLRMVAGLERITSGE   60 (356)
T ss_pred             EEeeeeEEEcCCC--EEEEECCCCCcHHHHHHHHHCCCCCCceE
Confidence            3444555556677  99999999999999999999987776553

>TIGR02928 orc1/cdc6 family replication initiation protein

Probab=97.68  E-value=8.5e-05  Score=61.39  Aligned_cols=45  Identities=24%  Similarity=0.382  Sum_probs=38.5

Q ss_pred             CccchHHHHHHHHHhhhc----CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          153 KTVGLDSIISEVWRCIED----HNEKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       153 ~~~g~~~~~~~l~~~L~~----~~~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      .++||+.+++.|...|.+    +....+-|+|++|+||||+++.+++..
T Consensus        16 ~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l   64 (365)
T TIGR02928        16 RIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKEL   64 (365)
T ss_pred             CCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence            588999999999998874    334579999999999999999999864

Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.

>PRK14243 phosphate transporter ATP-binding protein; Provisional

Probab=97.67  E-value=9e-06  Score=64.34  Aligned_cols=43  Identities=26%  Similarity=0.400  Sum_probs=33.4

Q ss_pred             CccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          153 KTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       153 ~~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      ..++....++++...+..++  +++|+|++|+|||||++.+.+..
T Consensus        18 ~~~~~~~il~~vsl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~   60 (264)
T PRK14243         18 VYYGSFLAVKNVWLDIPKNQ--ITAFIGPSGCGKSTILRCFNRLN   60 (264)
T ss_pred             EEECCEEEeecceEEEcCCC--EEEEECCCCCCHHHHHHHHHhhh
Confidence            33443345566666677788  99999999999999999999754

>PRK12402 replication factor C small subunit 2; Reviewed

Probab=97.67  E-value=7.4e-05  Score=60.97  Aligned_cols=46  Identities=22%  Similarity=0.397  Sum_probs=39.5

Q ss_pred             CCccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          152 GKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      ..++|.+..++.+..++..+....+-++|+.|+||||+|+.+.+..
T Consensus        15 ~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l   60 (337)
T PRK12402         15 EDILGQDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALAREL   60 (337)
T ss_pred             HHhcCCHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence            4578999999999998888776678899999999999999987764

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=97.67  E-value=1.2e-05  Score=69.13  Aligned_cols=43  Identities=16%  Similarity=0.277  Sum_probs=33.8

Q ss_pred             HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCCC
Q 037945          160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHDF  204 (206)
Q Consensus       160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~F  204 (206)
                      .++++...+..++  +++|+|++|+|||||++.+++...+.+|.+
T Consensus       263 ~l~~vsl~i~~Ge--~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i  305 (491)
T PRK10982        263 SIRDVSFDLHKGE--ILGIAGLVGAKRTDIVETLFGIREKSAGTI  305 (491)
T ss_pred             ccceeeEEEeCCc--EEEEecCCCCCHHHHHHHHcCCCcCCccEE
Confidence            4555555556677  999999999999999999999876655543

>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.67  E-value=8e-06  Score=64.05  Aligned_cols=37  Identities=30%  Similarity=0.408  Sum_probs=30.5

Q ss_pred             HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945          160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFR  198 (206)
Q Consensus       160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~  198 (206)
                      .++++...+..++  +++|+|++|+|||||++.|.+-..
T Consensus        18 ~l~~i~~~i~~Ge--~~~i~G~nGsGKSTLl~~i~Gl~~   54 (250)
T PRK14262         18 AVKNVTMKIFKNQ--ITAIIGPSGCGKTTLLRSINRMND   54 (250)
T ss_pred             eEeeeeEeecCCC--EEEEECCCCCCHHHHHHHHhcccc
Confidence            4555666666788  999999999999999999998654

>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.67  E-value=8.1e-06  Score=64.08  Aligned_cols=36  Identities=25%  Similarity=0.375  Sum_probs=29.2

Q ss_pred             HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      .++++...+..++  +++|+|++|+|||||++.|.+-.
T Consensus        20 ~l~~vs~~i~~Ge--~~~l~G~nGsGKSTLl~~l~Gl~   55 (252)
T PRK14255         20 ALKGIDLDFNQNE--ITALIGPSGCGKSTYLRTLNRMN   55 (252)
T ss_pred             EEecceEEEcCCC--EEEEECCCCCCHHHHHHHHhccc
Confidence            4455555566677  99999999999999999998753

>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=97.67  E-value=3.1e-05  Score=56.29  Aligned_cols=34  Identities=26%  Similarity=0.549  Sum_probs=28.0

Q ss_pred             hhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          168 IEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       168 L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      +.+++  +++|+|++|+|||||++.|.+...+.+|+
T Consensus        22 i~~g~--~~~i~G~nGsGKStll~~l~g~~~~~~G~   55 (157)
T cd00267          22 LKAGE--IVALVGPNGSGKSTLLRAIAGLLKPTSGE   55 (157)
T ss_pred             EcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCccE
Confidence            44566  99999999999999999999987665453

The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=97.66  E-value=7.8e-06  Score=62.95  Aligned_cols=52  Identities=23%  Similarity=0.367  Sum_probs=44.1

Q ss_pred             CCCCccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          150 PIGKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       150 ~~~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      .+++.+|....+++|...+..++  +.+++|+||.||||..++|.+...+.+|+
T Consensus         7 ~vtK~Fg~k~av~~isf~v~~G~--i~GllG~NGAGKTTtfRmILglle~~~G~   58 (300)
T COG4152           7 GVTKSFGDKKAVDNISFEVPPGE--IFGLLGPNGAGKTTTFRMILGLLEPTEGE   58 (300)
T ss_pred             cchhccCceeeecceeeeecCCe--EEEeecCCCCCccchHHHHhccCCccCce
Confidence            34567787778888888888888  99999999999999999999998886564

>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional

Probab=97.66  E-value=1.2e-05  Score=65.51  Aligned_cols=42  Identities=24%  Similarity=0.278  Sum_probs=33.8

Q ss_pred             HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      .++++...+..++  +++|+|.+|+|||||++.|.+-..+.+|.
T Consensus        30 ~l~~vsl~i~~Ge--~~~IvG~sGsGKSTLl~~l~gl~~p~~G~   71 (327)
T PRK11308         30 ALDGVSFTLERGK--TLAVVGESGCGKSTLARLLTMIETPTGGE   71 (327)
T ss_pred             EEeeeEEEECCCC--EEEEECCCCCcHHHHHHHHHcCCCCCCcE
Confidence            3455555666778  99999999999999999999987665554

>PRK13633 cobalt transporter ATP-binding subunit; Provisional

Probab=97.66  E-value=1.4e-05  Score=63.86  Aligned_cols=42  Identities=21%  Similarity=0.350  Sum_probs=34.0

Q ss_pred             HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      .++++...+..++  +++|+|++|+|||||++.|.+...+.+|.
T Consensus        25 vl~~vs~~i~~Ge--~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~   66 (280)
T PRK13633         25 ALDDVNLEVKKGE--FLVILGRNGSGKSTIAKHMNALLIPSEGK   66 (280)
T ss_pred             eeeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCce
Confidence            4555555566777  99999999999999999999987766553

>PRK14240 phosphate transporter ATP-binding protein; Provisional

Probab=97.66  E-value=1e-05  Score=63.39  Aligned_cols=37  Identities=32%  Similarity=0.481  Sum_probs=30.2

Q ss_pred             HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945          160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFR  198 (206)
Q Consensus       160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~  198 (206)
                      .++++...+..++  +++|+|++|+|||||++.|.+...
T Consensus        18 ~l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~i~G~~~   54 (250)
T PRK14240         18 ALKKINLDIEENQ--VTALIGPSGCGKSTFLRTLNRMND   54 (250)
T ss_pred             eeecceEEEcCCC--EEEEECCCCCCHHHHHHHHhcccc
Confidence            4555656666788  999999999999999999998543

>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.66  E-value=9.4e-06  Score=63.70  Aligned_cols=37  Identities=27%  Similarity=0.418  Sum_probs=30.3

Q ss_pred             HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945          160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFR  198 (206)
Q Consensus       160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~  198 (206)
                      .++++...+..++  +++|+|++|+|||||++.+.+...
T Consensus        19 ~l~~isl~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~   55 (251)
T PRK14270         19 ALNDINLPIYENK--ITALIGPSGCGKSTFLRCLNRMND   55 (251)
T ss_pred             eeeceeEEEcCCC--EEEEECCCCCCHHHHHHHHHhccC
Confidence            4455555566778  999999999999999999998654

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=97.66  E-value=1.4e-05  Score=69.10  Aligned_cols=41  Identities=20%  Similarity=0.282  Sum_probs=32.6

Q ss_pred             HHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          161 ISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       161 ~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      ++++...+..++  +++|+|+||+|||||++.|.+...+.+|.
T Consensus       279 l~~isl~i~~Ge--~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~  319 (510)
T PRK15439        279 FRNISLEVRAGE--ILGLAGVVGAGRTELAETLYGLRPARGGR  319 (510)
T ss_pred             ccceeEEEcCCc--EEEEECCCCCCHHHHHHHHcCCCCCCCcE
Confidence            445555555677  99999999999999999999987665554

>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.66  E-value=7.7e-06  Score=65.47  Aligned_cols=44  Identities=25%  Similarity=0.360  Sum_probs=33.8

Q ss_pred             CccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945          153 KTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFR  198 (206)
Q Consensus       153 ~~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~  198 (206)
                      ..++....++++...+..++  +++|+|++|+|||||++.|.+...
T Consensus        47 ~~~~~~~il~~is~~i~~Ge--~~~I~G~nGsGKSTLl~~l~Gl~~   90 (285)
T PRK14254         47 VFYGDEQALDDVSMDIPENQ--VTAMIGPSGCGKSTFLRCINRMND   90 (285)
T ss_pred             EEECCEeeEeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhccCC
Confidence            33443345566666666788  999999999999999999998754

>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.65  E-value=8.7e-06  Score=63.96  Aligned_cols=37  Identities=30%  Similarity=0.420  Sum_probs=29.9

Q ss_pred             HHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          159 SIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       159 ~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      ..++++...+..++  +++|+|++|+|||||++.+.+..
T Consensus        20 ~~l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~   56 (253)
T PRK14261         20 HALYDITISIPKNR--VTALIGPSGCGKSTLLRCFNRMN   56 (253)
T ss_pred             eeeeeeEEEECCCc--EEEEECCCCCCHHHHHHHHhccc
Confidence            34555555566678  99999999999999999999753

>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.65  E-value=7.8e-06  Score=64.20  Aligned_cols=37  Identities=24%  Similarity=0.449  Sum_probs=30.3

Q ss_pred             HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945          160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFR  198 (206)
Q Consensus       160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~  198 (206)
                      .++++...+..++  +++|+|++|+|||||++.+.+-..
T Consensus        19 ~l~~isl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~   55 (252)
T PRK14256         19 AVKDVSMDFPENS--VTAIIGPSGCGKSTVLRSINRMHD   55 (252)
T ss_pred             EEecceEEEcCCC--EEEEECCCCCCHHHHHHHHHhccc
Confidence            4555555566778  999999999999999999998753

>TIGR00554 panK_bact pantothenate kinase, bacterial type

Probab=97.65  E-value=8.2e-05  Score=59.51  Aligned_cols=27  Identities=26%  Similarity=0.314  Sum_probs=22.5

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          171 HNEKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       171 ~~~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      +...+|||.|++|+|||||++.+.+-.
T Consensus        60 ~~p~IIGIaG~~GSGKSTlar~L~~ll   86 (290)
T TIGR00554        60 KIPYIISIAGSVAVGKSTTARILQALL   86 (290)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            445699999999999999999875543

Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=97.64  E-value=1.4e-05  Score=68.91  Aligned_cols=41  Identities=24%  Similarity=0.434  Sum_probs=32.3

Q ss_pred             HHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          161 ISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       161 ~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      ++++...+..++  +++|+|++|+|||||++.|.+...+.+|.
T Consensus       268 l~~vsl~i~~Ge--~~~liG~NGsGKSTLl~~l~G~~~p~~G~  308 (501)
T PRK10762        268 VNDVSFTLRKGE--ILGVSGLMGAGRTELMKVLYGALPRTSGY  308 (501)
T ss_pred             cccceEEEcCCc--EEEEecCCCCCHHHHHHHHhCCCCCCceE
Confidence            444555555677  99999999999999999999987665454

>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=97.64  E-value=2.4e-05  Score=61.24  Aligned_cols=42  Identities=26%  Similarity=0.415  Sum_probs=35.6

Q ss_pred             HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      .+++|+..+..+.  +++.+|+||.||||+.|++-+...|.+|+
T Consensus        39 AVqdisf~IP~G~--ivgflGaNGAGKSTtLKmLTGll~p~~G~   80 (325)
T COG4586          39 AVQDISFEIPKGE--IVGFLGANGAGKSTTLKMLTGLLLPTSGK   80 (325)
T ss_pred             hhheeeeecCCCc--EEEEEcCCCCcchhhHHHHhCccccCCCe
Confidence            5566666677788  99999999999999999999988877664

>PRK10851 sulfate/thiosulfate transporter subunit; Provisional

Probab=97.63  E-value=4.4e-05  Score=62.96  Aligned_cols=42  Identities=26%  Similarity=0.399  Sum_probs=34.4

Q ss_pred             HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      .++++...+.+++  +++|+|++|+|||||++.|.+...+.+|.
T Consensus        17 ~l~~isl~i~~Ge--~~~llGpsGsGKSTLLr~IaGl~~p~~G~   58 (353)
T PRK10851         17 VLNDISLDIPSGQ--MVALLGPSGSGKTTLLRIIAGLEHQTSGH   58 (353)
T ss_pred             EEEEeEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCcE
Confidence            4455556666788  99999999999999999999987776554

>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT

Probab=97.63  E-value=5.6e-06  Score=68.42  Aligned_cols=46  Identities=26%  Similarity=0.475  Sum_probs=34.7

Q ss_pred             ccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCC
Q 037945          154 TVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTE  201 (206)
Q Consensus       154 ~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~  201 (206)
                      .||....++++...+..++  +++|+|++|+|||||.+.|.+...+.+
T Consensus        14 ~~~~~~~l~~vsl~i~~Ge--~~~llGpsGsGKSTLLr~iaGl~~p~~   59 (362)
T TIGR03258        14 AYGANTVLDDLSLEIEAGE--LLALIGKSGCGKTTLLRAIAGFVKAAG   59 (362)
T ss_pred             EECCeEEEeeeEEEECCCC--EEEEECCCCCCHHHHHHHHhCCCCCCC
Confidence            3443234445555556677  999999999999999999999887765

This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.

>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.63  E-value=1.1e-05  Score=63.25  Aligned_cols=37  Identities=27%  Similarity=0.392  Sum_probs=30.4

Q ss_pred             HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945          160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFR  198 (206)
Q Consensus       160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~  198 (206)
                      .++++...+..++  +++|+|++|+|||||++.|.+...
T Consensus        19 ~l~~~sl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~   55 (251)
T PRK14251         19 ALHGISLDFEEKE--LTALIGPSGCGKSTFLRCLNRMND   55 (251)
T ss_pred             eeeeeeEEEcCCC--EEEEECCCCCCHHHHHHHHhhccc
Confidence            4555555566677  999999999999999999998764

>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter

Probab=97.62  E-value=2.2e-05  Score=70.52  Aligned_cols=52  Identities=27%  Similarity=0.380  Sum_probs=39.4

Q ss_pred             CCCCccc-hHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          150 PIGKTVG-LDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       150 ~~~~~~g-~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      +.+..|+ ....++++...+..++  .++|+|++|+|||||++.+.+...|.+|.
T Consensus       478 ~vsf~y~~~~~iL~~isl~i~~G~--~vaIvG~SGsGKSTLlklL~gl~~p~~G~  530 (708)
T TIGR01193       478 DVSYSYGYGSNILSDISLTIKMNS--KTTIVGMSGSGKSTLAKLLVGFFQARSGE  530 (708)
T ss_pred             EEEEEcCCCCcceeceeEEECCCC--EEEEECCCCCCHHHHHHHHhccCCCCCcE
Confidence            3344454 2345666666667788  99999999999999999999988876564

This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.

>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.62  E-value=1.7e-05  Score=59.22  Aligned_cols=50  Identities=22%  Similarity=0.410  Sum_probs=37.9

Q ss_pred             CCCccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCC
Q 037945          151 IGKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEH  202 (206)
Q Consensus       151 ~~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~  202 (206)
                      .++.||....++++...+..++  +.+++||+|.|||||...+..-...++|
T Consensus         7 v~K~y~~~~vl~~isl~i~~g~--iTs~IGPNGAGKSTLLS~~sRL~~~d~G   56 (252)
T COG4604           7 VSKSYGTKVVLDDVSLDIPKGG--ITSIIGPNGAGKSTLLSMMSRLLKKDSG   56 (252)
T ss_pred             hhHhhCCEEeeccceeeecCCc--eeEEECCCCccHHHHHHHHHHhccccCc
Confidence            3455666666777776677777  9999999999999999988766554433

>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

Probab=97.62  E-value=1.6e-05  Score=69.67  Aligned_cols=56  Identities=21%  Similarity=0.327  Sum_probs=44.7

Q ss_pred             ccccCCCCccc-hHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          146 VEERPIGKTVG-LDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       146 ~~~~~~~~~~g-~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      +...+.+..|+ ....++++...+..++  .++|||++|+|||||++.+....++.+|.
T Consensus       329 I~f~~vsf~y~~~~~vl~~is~~i~~Ge--~vaiVG~sGsGKSTl~~LL~r~~~~~~G~  385 (567)
T COG1132         329 IEFENVSFSYPGKKPVLKDISFSIEPGE--KVAIVGPSGSGKSTLIKLLLRLYDPTSGE  385 (567)
T ss_pred             EEEEEEEEEcCCCCccccCceEEEcCCC--EEEEECCCCCCHHHHHHHHhccCCCCCCe
Confidence            34444555566 4567888888888899  99999999999999999999988876554

>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.62  E-value=9.8e-06  Score=63.42  Aligned_cols=36  Identities=28%  Similarity=0.448  Sum_probs=29.6

Q ss_pred             HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      .++++...+..++  +++|+|++|+|||||++.+.+..
T Consensus        17 ~l~~isl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~   52 (246)
T PRK14269         17 ALFDINMQIEQNK--ITALIGASGCGKSTFLRCFNRMN   52 (246)
T ss_pred             eeeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhccc
Confidence            4455555566677  99999999999999999999875

>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional

Probab=97.62  E-value=2.3e-05  Score=68.33  Aligned_cols=42  Identities=21%  Similarity=0.299  Sum_probs=35.2

Q ss_pred             HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      .++++...+..++  .++|+|++|+|||||++.+.+...+.+|.
T Consensus       338 ~l~~i~~~i~~G~--~~aivG~sGsGKSTL~~ll~g~~~~~~G~  379 (547)
T PRK10522        338 SVGPINLTIKRGE--LLFLIGGNGSGKSTLAMLLTGLYQPQSGE  379 (547)
T ss_pred             EEecceEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCeE
Confidence            5666666677788  99999999999999999999988776553

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=97.62  E-value=1.1e-05  Score=69.70  Aligned_cols=39  Identities=26%  Similarity=0.442  Sum_probs=32.3

Q ss_pred             HHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcC
Q 037945          159 SIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRD  199 (206)
Q Consensus       159 ~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~  199 (206)
                      ..++++...+.+++  +++|+|++|+|||||++.|.+...+
T Consensus        15 ~il~~isl~i~~Ge--~~~liG~nGsGKSTLl~~i~G~~~~   53 (500)
T TIGR02633        15 KALDGIDLEVRPGE--CVGLCGENGAGKSTLMKILSGVYPH   53 (500)
T ss_pred             EeecceEEEEeCCc--EEEEECCCCCCHHHHHHHHhCCCCC
Confidence            35566666677788  9999999999999999999997654

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.61  E-value=8.6e-06  Score=64.48  Aligned_cols=45  Identities=22%  Similarity=0.319  Sum_probs=34.4

Q ss_pred             CCccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945          152 GKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFR  198 (206)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~  198 (206)
                      +..++....++++...+..++  +++|+|++|+|||||++.|.+...
T Consensus        23 ~~~~~~~~vl~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~   67 (265)
T PRK14252         23 NFYYGGYQALKNINMMVHEKQ--VTALIGPSGCGKSTFLRCFNRMHD   67 (265)
T ss_pred             EEEECCeeeeeeeEEEEcCCc--EEEEECCCCCCHHHHHHHHhcccC
Confidence            334443345666666667788  999999999999999999998754

>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.61  E-value=9.4e-06  Score=64.70  Aligned_cols=48  Identities=25%  Similarity=0.306  Sum_probs=37.0

Q ss_pred             CCCCccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcC
Q 037945          150 PIGKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRD  199 (206)
Q Consensus       150 ~~~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~  199 (206)
                      ..+..|+....++++...+..++  +++|+|++|+|||||++.|.+...+
T Consensus        26 nl~~~~~~~~il~~vs~~i~~Ge--~~~I~G~nGsGKSTLl~~l~Gl~~p   73 (276)
T PRK14271         26 NLTLGFAGKTVLDQVSMGFPARA--VTSLMGPTGSGKTTFLRTLNRMNDK   73 (276)
T ss_pred             eEEEEECCEEEeeeeEEEEcCCc--EEEEECCCCCCHHHHHHHHhccCCc
Confidence            34444554445666766777788  9999999999999999999987654

>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.61  E-value=1e-05  Score=63.93  Aligned_cols=38  Identities=34%  Similarity=0.363  Sum_probs=32.1

Q ss_pred             HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcC
Q 037945          160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRD  199 (206)
Q Consensus       160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~  199 (206)
                      .++++...+..++  +++|+|++|+|||||++.+.+...+
T Consensus        22 il~~is~~i~~Ge--~~~I~G~nGsGKSTLl~~l~Gl~~~   59 (261)
T PRK14258         22 ILEGVSMEIYQSK--VTAIIGPSGCGKSTFLKCLNRMNEL   59 (261)
T ss_pred             EeeceEEEEcCCc--EEEEECCCCCCHHHHHHHHhcccCC
Confidence            4556666667788  9999999999999999999998765

>PLN03025 replication factor C subunit; Provisional

Probab=97.61  E-value=9.8e-05  Score=60.08  Aligned_cols=46  Identities=28%  Similarity=0.318  Sum_probs=38.1

Q ss_pred             CCccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          152 GKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      ..++|.+..+..|..++..++..-+-++|++|+||||+|+.+.+..
T Consensus        13 ~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l   58 (319)
T PLN03025         13 DDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHEL   58 (319)
T ss_pred             HHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence            4578888888888887777766667799999999999999987764

>PRK14236 phosphate transporter ATP-binding protein; Provisional

Probab=97.61  E-value=1.1e-05  Score=64.08  Aligned_cols=46  Identities=24%  Similarity=0.314  Sum_probs=34.6

Q ss_pred             CCCccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945          151 IGKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFR  198 (206)
Q Consensus       151 ~~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~  198 (206)
                      .+..++....++++...+..++  +++|+|++|+|||||++.+.+...
T Consensus        31 l~~~~~~~~il~~vs~~i~~Ge--~~~I~G~nGsGKSTLl~~laGl~~   76 (272)
T PRK14236         31 LNLFYGDKQALFDISMRIPKNR--VTAFIGPSGCGKSTLLRCFNRMND   76 (272)
T ss_pred             EEEEECCeeEeeeEEEEEcCCC--EEEEECCCCCCHHHHHHHHHhcCC
Confidence            3444443335556666666788  999999999999999999998754

>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=97.61  E-value=2.5e-05  Score=62.02  Aligned_cols=47  Identities=21%  Similarity=0.311  Sum_probs=36.5

Q ss_pred             cchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          155 VGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       155 ~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      +|.-...++|...+.+++  .+++.|++|+|||||.+.|.+-..+++|.
T Consensus        12 ~~~~~a~~di~l~i~~Ge--~vaLlGpSGaGKsTlLRiIAGLe~p~~G~   58 (345)
T COG1118          12 FGAFGALDDISLDIKSGE--LVALLGPSGAGKSTLLRIIAGLETPDAGR   58 (345)
T ss_pred             cccccccccceeeecCCc--EEEEECCCCCcHHHHHHHHhCcCCCCCce
Confidence            333333445666667788  99999999999999999999988877654

>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=97.61  E-value=5.2e-05  Score=60.59  Aligned_cols=39  Identities=23%  Similarity=0.313  Sum_probs=31.6

Q ss_pred             HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCC
Q 037945          160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDT  200 (206)
Q Consensus       160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~  200 (206)
                      .++++...+..++  +++|+|++|+|||||++.|++...+.
T Consensus        22 ~l~~v~l~i~~Ge--~~~I~G~nGaGKSTLl~~l~G~~~p~   60 (282)
T PRK13640         22 ALNDISFSIPRGS--WTALIGHNGSGKSTISKLINGLLLPD   60 (282)
T ss_pred             ceeeEEEEEcCCC--EEEEECCCCCcHHHHHHHHhcccCCC
Confidence            4445555566677  99999999999999999999987664

>PRK09376 rho transcription termination factor Rho; Provisional

Probab=97.61  E-value=5.2e-05  Score=62.68  Aligned_cols=31  Identities=19%  Similarity=0.173  Sum_probs=26.8

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCc
Q 037945          171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHDFD  205 (206)
Q Consensus       171 ~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~Fd  205 (206)
                      ++  ...|+|++|+|||||++.||+....  ++||
T Consensus       169 GQ--R~lIvgppGvGKTTLaK~Ian~I~~--nhFD  199 (416)
T PRK09376        169 GQ--RGLIVAPPKAGKTVLLQNIANSITT--NHPE  199 (416)
T ss_pred             Cc--eEEEeCCCCCChhHHHHHHHHHHHh--hcCC
Confidence            55  9999999999999999999998764  3665

>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=97.61  E-value=5.3e-05  Score=60.41  Aligned_cols=42  Identities=21%  Similarity=0.337  Sum_probs=34.1

Q ss_pred             HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      .++++...+..++  +++|+|.+|+|||||++.|.+...+.+|.
T Consensus        22 ~l~~v~l~i~~Ge--~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~   63 (277)
T PRK13642         22 QLNGVSFSITKGE--WVSIIGQNGSGKSTTARLIDGLFEEFEGK   63 (277)
T ss_pred             eeeeeEEEEcCCC--EEEEECCCCCcHHHHHHHHhcCCCCCCCE
Confidence            4455555566788  99999999999999999999988776554

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=97.60  E-value=4.4e-05  Score=63.90  Aligned_cols=39  Identities=26%  Similarity=0.467  Sum_probs=31.2

Q ss_pred             HHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          163 EVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       163 ~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      ++...+..++  +++|+|++|+|||||++.|.+-..+.+|.
T Consensus        46 ~isl~i~~Ge--i~~LvG~NGsGKSTLLr~I~Gl~~p~sG~   84 (400)
T PRK10070         46 DASLAIEEGE--IFVIMGLSGSGKSTMVRLLNRLIEPTRGQ   84 (400)
T ss_pred             eEEEEEcCCC--EEEEECCCCchHHHHHHHHHcCCCCCCCE
Confidence            3344445577  99999999999999999999988776564

>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]

Probab=97.60  E-value=2.2e-05  Score=60.45  Aligned_cols=53  Identities=19%  Similarity=0.238  Sum_probs=40.3

Q ss_pred             ccCCCCccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCC
Q 037945          148 ERPIGKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEH  202 (206)
Q Consensus       148 ~~~~~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~  202 (206)
                      ..+..-.++....+++|.=.+..++  --.|+|+||+|||||++.+.++..+.++
T Consensus        34 l~~v~v~r~gk~iL~~isW~V~~ge--~W~I~G~NGsGKTTLL~ll~~~~~pssg   86 (257)
T COG1119          34 LKNVSVRRNGKKILGDLSWQVNPGE--HWAIVGPNGAGKTTLLSLLTGEHPPSSG   86 (257)
T ss_pred             ecceEEEECCEeeccccceeecCCC--cEEEECCCCCCHHHHHHHHhcccCCCCC
Confidence            3333445566667777777777788  8899999999999999999998876433

>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.60  E-value=1.1e-05  Score=63.70  Aligned_cols=42  Identities=29%  Similarity=0.383  Sum_probs=32.4

Q ss_pred             cchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945          155 VGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFR  198 (206)
Q Consensus       155 ~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~  198 (206)
                      ++....++++...+..++  +++|+|++|+|||||++.|.+...
T Consensus        22 ~~~~~il~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~i~Gl~~   63 (258)
T PRK14268         22 YGEKQALKNVSMQIPKNS--VTALIGPSGCGKSTFIRCLNRMND   63 (258)
T ss_pred             eCCeeeeeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhcCCC
Confidence            343334555655666778  999999999999999999998654

>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional

Probab=97.59  E-value=4.9e-05  Score=62.16  Aligned_cols=42  Identities=19%  Similarity=0.364  Sum_probs=33.6

Q ss_pred             HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      .++++...+..++  +++|+|.+|+|||||++.|.+-..+.+|.
T Consensus        36 ~l~~vsl~i~~Ge--~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~   77 (331)
T PRK15079         36 AVDGVTLRLYEGE--TLGVVGESGCGKSTFARAIIGLVKATDGE   77 (331)
T ss_pred             EEeeEEEEEcCCC--EEEEECCCCCCHHHHHHHHHCCCCCCCcE
Confidence            3445555566778  99999999999999999999987766553

>PRK00411 cdc6 cell division control protein 6; Reviewed

Probab=97.59  E-value=0.00014  Score=60.76  Aligned_cols=47  Identities=23%  Similarity=0.277  Sum_probs=38.7

Q ss_pred             CCccchHHHHHHHHHhhhc----CCCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945          152 GKTVGLDSIISEVWRCIED----HNEKVIGLYGMGGVGKTTLLKKLNNKFR  198 (206)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~----~~~~vI~IvG~~G~GKTTLa~~i~~~~~  198 (206)
                      ..++||+.+++.|...+.+    +....+-|+|++|+||||+++.+++...
T Consensus        30 ~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~   80 (394)
T PRK00411         30 ENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELE   80 (394)
T ss_pred             CCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence            4588999999999888754    2344678999999999999999998764

>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.59  E-value=8.7e-06  Score=65.22  Aligned_cols=42  Identities=26%  Similarity=0.304  Sum_probs=31.9

Q ss_pred             ccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          154 TVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       154 ~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      .++....++++...+..++  +++|+|++|+|||||++.|.+..
T Consensus        48 ~~~~~~il~~vsl~i~~Ge--~~~l~G~nGsGKSTLl~~L~Gl~   89 (286)
T PRK14275         48 YYGEFEAVKKVNADILSKY--VTAIIGPSGCGKSTFLRAINRMN   89 (286)
T ss_pred             EECCEEEEeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhccc
Confidence            3433234555555666788  99999999999999999999853

>cd03288 ABCC_SUR2 The SUR domain 2

Probab=97.58  E-value=6.1e-05  Score=59.36  Aligned_cols=42  Identities=19%  Similarity=0.274  Sum_probs=33.1

Q ss_pred             HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      .++++...+..++  +++|+|.+|+|||||++.+.+...+.+|.
T Consensus        36 il~~isl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~   77 (257)
T cd03288          36 VLKHVKAYIKPGQ--KVGICGRTGSGKSSLSLAFFRMVDIFDGK   77 (257)
T ss_pred             ceeEEEEEEcCCC--EEEEECCCCCCHHHHHHHHHcccCCCCCe
Confidence            4445555555677  99999999999999999999987665553

The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=97.58  E-value=2.5e-05  Score=67.40  Aligned_cols=39  Identities=21%  Similarity=0.446  Sum_probs=33.1

Q ss_pred             HHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcC
Q 037945          159 SIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRD  199 (206)
Q Consensus       159 ~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~  199 (206)
                      ..++++...+..++  +++|+|++|+|||||++.+.+...+
T Consensus       274 ~~l~~is~~i~~Ge--~~~l~G~NGsGKSTLl~~l~G~~~p  312 (500)
T TIGR02633       274 KRVDDVSFSLRRGE--ILGVAGLVGAGRTELVQALFGAYPG  312 (500)
T ss_pred             cccccceeEEeCCc--EEEEeCCCCCCHHHHHHHHhCCCCC
Confidence            35667776777788  9999999999999999999988763

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.58  E-value=5.4e-05  Score=56.62  Aligned_cols=42  Identities=26%  Similarity=0.350  Sum_probs=35.0

Q ss_pred             HHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCC
Q 037945          159 SIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEH  202 (206)
Q Consensus       159 ~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~  202 (206)
                      ..++++.-.+.+++  .+.+.|++|+|||||.+.+.+...|..|
T Consensus        19 ~~le~vsL~ia~ge--~vv~lGpSGcGKTTLLnl~AGf~~P~~G   60 (259)
T COG4525          19 SALEDVSLTIASGE--LVVVLGPSGCGKTTLLNLIAGFVTPSRG   60 (259)
T ss_pred             hhhhccceeecCCC--EEEEEcCCCccHHHHHHHHhcCcCcccc
Confidence            36667777777888  8999999999999999999998776544

>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.58  E-value=1.6e-05  Score=62.68  Aligned_cols=37  Identities=30%  Similarity=0.385  Sum_probs=30.4

Q ss_pred             HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945          160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFR  198 (206)
Q Consensus       160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~  198 (206)
                      .++++...+..++  +++|+|++|+|||||++.|.+...
T Consensus        22 il~~isl~i~~Ge--~~~l~G~nGsGKSTLlk~l~Gl~~   58 (259)
T PRK14260         22 AIEGISMDIYRNK--VTAIIGPSGCGKSTFIKTLNRISE   58 (259)
T ss_pred             eecceEEEEcCCC--EEEEECCCCCCHHHHHHHHHhhcC
Confidence            4555555566678  999999999999999999998755

>PRK00440 rfc replication factor C small subunit; Reviewed

Probab=97.58  E-value=0.00012  Score=59.18  Aligned_cols=46  Identities=24%  Similarity=0.354  Sum_probs=40.3

Q ss_pred             CCccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          152 GKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      ..++|.+..++.+..++..+....+-++|+.|+||||+++.+.+..
T Consensus        17 ~~~~g~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l   62 (319)
T PRK00440         17 DEIVGQEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALAREL   62 (319)
T ss_pred             HHhcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence            4578999899999999988777778999999999999999998865

>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=97.57  E-value=3.9e-05  Score=67.26  Aligned_cols=43  Identities=28%  Similarity=0.471  Sum_probs=36.0

Q ss_pred             HHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          159 SIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       159 ~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      ..++++...+..++  .++|+|++|+|||||++.+.+...|.+|.
T Consensus       329 ~~l~~i~~~i~~G~--~~~ivG~sGsGKSTLl~ll~g~~~p~~G~  371 (569)
T PRK10789        329 PALENVNFTLKPGQ--MLGICGPTGSGKSTLLSLIQRHFDVSEGD  371 (569)
T ss_pred             ccccCeeEEECCCC--EEEEECCCCCCHHHHHHHHhcccCCCCCE
Confidence            35666666677788  99999999999999999999988876564

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=97.57  E-value=1.6e-05  Score=68.47  Aligned_cols=43  Identities=19%  Similarity=0.257  Sum_probs=33.1

Q ss_pred             ccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945          154 TVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFR  198 (206)
Q Consensus       154 ~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~  198 (206)
                      .||....++++...+..++  +++|+|++|+|||||++.+.+...
T Consensus       269 ~~~~~~il~~vsl~i~~Ge--~~~i~G~NGsGKSTLl~~l~G~~~  311 (490)
T PRK10938        269 SYNDRPILHNLSWQVNPGE--HWQIVGPNGAGKSTLLSLITGDHP  311 (490)
T ss_pred             EECCeeEEeeceEEEcCCC--EEEEECCCCCCHHHHHHHHcCCCC
Confidence            3443334566666666788  999999999999999999998654

>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.56  E-value=1.1e-05  Score=63.81  Aligned_cols=44  Identities=25%  Similarity=0.324  Sum_probs=34.3

Q ss_pred             ccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcC
Q 037945          154 TVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRD  199 (206)
Q Consensus       154 ~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~  199 (206)
                      .+|....++++...+..++  +++|+|.+|+|||||++.+.+...+
T Consensus        17 ~~~~~~~l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~p   60 (261)
T PRK14263         17 FYGNFMAVRDSHVPIRKNE--ITGFIGPSGCGKSTVLRSLNRMNDL   60 (261)
T ss_pred             EeCCEEEEeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHHccccc
Confidence            4454445566666667788  9999999999999999999887643

>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.55  E-value=1.3e-05  Score=64.81  Aligned_cols=43  Identities=33%  Similarity=0.382  Sum_probs=32.9

Q ss_pred             ccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945          154 TVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFR  198 (206)
Q Consensus       154 ~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~  198 (206)
                      .++....++++...+..++  +++|+|++|+|||||++.|.+...
T Consensus        54 ~~~~~~iL~~is~~i~~Ge--~~~IvG~nGsGKSTLl~~L~Gl~~   96 (305)
T PRK14264         54 YYGDDHALKGVSMDIPEKS--VTALIGPSGCGKSTFLRCLNRMND   96 (305)
T ss_pred             EeCCeeeeeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhcccc
Confidence            3443334555555666788  999999999999999999998754

>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.55  E-value=1.6e-05  Score=62.41  Aligned_cols=39  Identities=23%  Similarity=0.394  Sum_probs=31.4

Q ss_pred             HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCC
Q 037945          160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDT  200 (206)
Q Consensus       160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~  200 (206)
                      .++++...+..++  +++|+|++|+|||||++.|.+...+.
T Consensus        19 il~~~s~~i~~G~--~~~i~G~nGsGKSTLl~~l~Gl~~~~   57 (251)
T PRK14249         19 VLKNINMDFPERQ--ITAIIGPSGCGKSTLLRALNRMNDIV   57 (251)
T ss_pred             EecceEEEEcCCC--EEEEECCCCCCHHHHHHHHhcccCcc
Confidence            4455555566677  99999999999999999999876653

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=97.55  E-value=2e-05  Score=68.32  Aligned_cols=42  Identities=26%  Similarity=0.440  Sum_probs=33.8

Q ss_pred             HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      .++++...+..++  +++|+|++|+|||||++.|.+-..+.+|.
T Consensus       299 il~~is~~i~~Ge--~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~  340 (520)
T TIGR03269       299 AVDNVSLEVKEGE--IFGIVGTSGAGKTTLSKIIAGVLEPTSGE  340 (520)
T ss_pred             EEeeEEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCeE
Confidence            4555666666678  99999999999999999999987665454

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=97.55  E-value=2.2e-05  Score=69.49  Aligned_cols=42  Identities=19%  Similarity=0.181  Sum_probs=33.6

Q ss_pred             HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      .++++...+..++  +++|+|++|+|||||++.|.+-..+.+|.
T Consensus       339 ~l~~vs~~i~~Ge--~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~  380 (623)
T PRK10261        339 AVEKVSFDLWPGE--TLSLVGESGSGKSTTGRALLRLVESQGGE  380 (623)
T ss_pred             EEeeeEeEEcCCC--EEEEECCCCCCHHHHHHHHHcCCCCCCcE
Confidence            3455655666677  99999999999999999999887665554

>PRK13409 putative ATPase RIL; Provisional

Probab=97.55  E-value=4.9e-05  Score=66.77  Aligned_cols=38  Identities=34%  Similarity=0.454  Sum_probs=30.6

Q ss_pred             HHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          164 VWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       164 l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      +...+..++  +++|+|++|+|||||++.+.+...+.+|.
T Consensus       358 ~s~~i~~Ge--iv~l~G~NGsGKSTLlk~L~Gl~~p~~G~  395 (590)
T PRK13409        358 EGGEIYEGE--VIGIVGPNGIGKTTFAKLLAGVLKPDEGE  395 (590)
T ss_pred             cceEECCCC--EEEEECCCCCCHHHHHHHHhCCCCCCceE
Confidence            333445567  99999999999999999999988776554

>TIGR00150 HI0065_YjeE ATPase, YjeE family

Probab=97.55  E-value=0.00022  Score=50.35  Aligned_cols=35  Identities=29%  Similarity=0.276  Sum_probs=27.8

Q ss_pred             HHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945          162 SEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFR  198 (206)
Q Consensus       162 ~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~  198 (206)
                      ..|...|..+.  +|.+.|.-|+|||||++.+.....
T Consensus        13 ~~l~~~l~~~~--~i~l~G~lGaGKTtl~~~l~~~lg   47 (133)
T TIGR00150        13 KAFAKPLDFGT--VVLLKGDLGAGKTTLVQGLLQGLG   47 (133)
T ss_pred             HHHHHhCCCCC--EEEEEcCCCCCHHHHHHHHHHHcC
Confidence            34444555566  999999999999999999988754

Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.

>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family

Probab=97.54  E-value=7.5e-05  Score=65.14  Aligned_cols=43  Identities=16%  Similarity=0.275  Sum_probs=36.0

Q ss_pred             HHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          159 SIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       159 ~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      ..++++...+..++  .++|+|++|+|||||++.+.+...+.+|.
T Consensus       332 ~~l~~~~~~i~~G~--~~~ivG~sGsGKSTL~~ll~g~~~~~~G~  374 (544)
T TIGR01842       332 PTLRGISFRLQAGE--ALAIIGPSGSGKSTLARLIVGIWPPTSGS  374 (544)
T ss_pred             cccccceEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCce
Confidence            45667777777788  99999999999999999999988776553

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters

Probab=97.54  E-value=6.7e-05  Score=56.49  Aligned_cols=36  Identities=28%  Similarity=0.470  Sum_probs=28.6

Q ss_pred             HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      .++++...+..++  +++|+|++|+|||||++.+.+..
T Consensus        22 ~l~~vs~~i~~Ge--~~~l~G~nGsGKSTLl~~l~G~~   57 (192)
T cd03232          22 LLNNISGYVKPGT--LTALMGESGAGKTTLLDVLAGRK   57 (192)
T ss_pred             eEEccEEEEeCCc--EEEEECCCCCCHHHHHHHHhCCC
Confidence            3444544555677  99999999999999999999853

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

Probab=97.53  E-value=6.8e-05  Score=62.63  Aligned_cols=29  Identities=41%  Similarity=0.677  Sum_probs=26.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          175 VIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       175 vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      ||+|+|+||+||||+++++.+-.+|++|.
T Consensus       369 vigilGpNgiGKTTFvk~LAG~ikPdeg~  397 (591)
T COG1245         369 VIGILGPNGIGKTTFVKLLAGVIKPDEGS  397 (591)
T ss_pred             EEEEECCCCcchHHHHHHHhccccCCCCC
Confidence            99999999999999999999988877553

>PRK04195 replication factor C large subunit; Provisional

Probab=97.53  E-value=8.7e-05  Score=63.78  Aligned_cols=47  Identities=34%  Similarity=0.545  Sum_probs=39.2

Q ss_pred             CCCccchHHHHHHHHHhhhc---CC-CeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          151 IGKTVGLDSIISEVWRCIED---HN-EKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       151 ~~~~~g~~~~~~~l~~~L~~---~~-~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      ...++|.+..++.+..|+..   +. .+.+-|+|++|+||||+|+.+.+..
T Consensus        13 l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el   63 (482)
T PRK04195         13 LSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDY   63 (482)
T ss_pred             HHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHc
Confidence            34588999999999888864   22 5689999999999999999998875

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=97.53  E-value=3.6e-05  Score=65.87  Aligned_cols=41  Identities=24%  Similarity=0.387  Sum_probs=35.1

Q ss_pred             HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCC
Q 037945          160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEH  202 (206)
Q Consensus       160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~  202 (206)
                      .++++...+..++  +++|||.+|+|||||++.|.+-..|.+|
T Consensus       306 Av~~VSf~l~~GE--~lglVGeSGsGKSTlar~i~gL~~P~~G  346 (539)
T COG1123         306 AVDDVSFDLREGE--TLGLVGESGSGKSTLARILAGLLPPSSG  346 (539)
T ss_pred             eeeeeeeEecCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence            4667777777888  9999999999999999999998877644

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=97.53  E-value=2.6e-05  Score=69.05  Aligned_cols=42  Identities=12%  Similarity=0.174  Sum_probs=34.6

Q ss_pred             HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      .++++...+..++  +++|+|++|+|||||++.|.+...+.+|.
T Consensus        31 ~l~~is~~v~~Ge--~~~lvG~nGsGKSTLl~~l~Gll~p~~G~   72 (623)
T PRK10261         31 AVRNLSFSLQRGE--TLAIVGESGSGKSVTALALMRLLEQAGGL   72 (623)
T ss_pred             EEEeeEEEECCCC--EEEEECCCCChHHHHHHHHHcCCCCCCeE
Confidence            5666667777788  99999999999999999999987665453

>PLN03073 ABC transporter F family; Provisional

Probab=97.52  E-value=1e-05  Score=72.44  Aligned_cols=45  Identities=27%  Similarity=0.347  Sum_probs=35.3

Q ss_pred             CCCCccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhh
Q 037945          150 PIGKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNK  196 (206)
Q Consensus       150 ~~~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~  196 (206)
                      ..+..||....++++...+..++  +++|+|+||+|||||+++|.+.
T Consensus       182 nls~~y~~~~ll~~isl~i~~Ge--~~gLvG~NGsGKSTLLr~l~g~  226 (718)
T PLN03073        182 NFSISVGGRDLIVDASVTLAFGR--HYGLVGRNGTGKTTFLRYMAMH  226 (718)
T ss_pred             eEEEEeCCCEEEECCEEEECCCC--EEEEECCCCCCHHHHHHHHcCC
Confidence            34445664446667777777788  9999999999999999999864

>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional

Probab=97.52  E-value=2.5e-05  Score=63.77  Aligned_cols=37  Identities=16%  Similarity=0.322  Sum_probs=31.3

Q ss_pred             HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945          160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFR  198 (206)
Q Consensus       160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~  198 (206)
                      .++++...+..++  +++|+|.+|+|||||++.|.+-..
T Consensus        22 ~l~~vsl~i~~Ge--~~~lvG~sGsGKSTL~~~l~Gll~   58 (326)
T PRK11022         22 AVDRISYSVKQGE--VVGIVGESGSGKSVSSLAIMGLID   58 (326)
T ss_pred             EEeeeEEEECCCC--EEEEECCCCChHHHHHHHHHcCCC
Confidence            4556666677788  999999999999999999999765

>PRK14962 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.52  E-value=0.00017  Score=61.61  Aligned_cols=46  Identities=22%  Similarity=0.338  Sum_probs=38.6

Q ss_pred             CCccchHHHHHHHHHhhhcCCC-eEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          152 GKTVGLDSIISEVWRCIEDHNE-KVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~~~~-~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      ..++|.+.....|...+..+.+ +.+-++|++|+||||+|+.+.+..
T Consensus        14 ~divGq~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l   60 (472)
T PRK14962         14 SEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSL   60 (472)
T ss_pred             HHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            4588988888888888887775 468899999999999999997764

>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.52  E-value=5.7e-05  Score=66.16  Aligned_cols=56  Identities=20%  Similarity=0.237  Sum_probs=45.4

Q ss_pred             ccccCCCCccc-hH--HHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          146 VEERPIGKTVG-LD--SIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       146 ~~~~~~~~~~g-~~--~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      +.+.+++..|. |.  ..++++...+..++  ++++|||+|.||||+|.++-+...|.+|.
T Consensus       466 IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe--~vALVGPSGsGKSTiasLL~rfY~PtsG~  524 (716)
T KOG0058|consen  466 IEFEDVSFAYPTRPDVPVLKNLSFTIRPGE--VVALVGPSGSGKSTIASLLLRFYDPTSGR  524 (716)
T ss_pred             EEEEEeeeecCCCCCchhhcCceeeeCCCC--EEEEECCCCCCHHHHHHHHHHhcCCCCCe
Confidence            34455555554 33  37888999999999  99999999999999999999999887664

>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.51  E-value=2.3e-05  Score=61.53  Aligned_cols=37  Identities=27%  Similarity=0.370  Sum_probs=29.9

Q ss_pred             HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945          160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFR  198 (206)
Q Consensus       160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~  198 (206)
                      .++++...+..++  +++|+|++|+|||||++.|.+...
T Consensus        20 ~l~~is~~i~~Ge--~~~I~G~nGsGKSTLl~~i~G~~~   56 (251)
T PRK14244         20 ILFDINLDIYKRE--VTAFIGPSGCGKSTFLRCFNRMND   56 (251)
T ss_pred             eeeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHHhhcc
Confidence            4445555566678  999999999999999999998753

>PRK15455 PrkA family serine protein kinase; Provisional

Probab=97.51  E-value=0.00015  Score=62.72  Aligned_cols=45  Identities=20%  Similarity=0.413  Sum_probs=38.5

Q ss_pred             CccchHHHHHHHHHhhhc------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          153 KTVGLDSIISEVWRCIED------HNEKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       153 ~~~g~~~~~~~l~~~L~~------~~~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      .++|.+..+++|+..|..      ..-+++-++||+|+|||||++.|..-.
T Consensus        77 d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~l  127 (644)
T PRK15455         77 EFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLM  127 (644)
T ss_pred             cccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHH
Confidence            489999999999998842      445699999999999999999997654

>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily

Probab=97.50  E-value=0.00022  Score=56.32  Aligned_cols=38  Identities=26%  Similarity=0.358  Sum_probs=27.6

Q ss_pred             HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945          160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFR  198 (206)
Q Consensus       160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~  198 (206)
                      .+..+...+. .....+.|+|++|+|||||++.+++...
T Consensus        31 ~~~~l~~~~~-~~~~~~~l~G~~G~GKTtl~~~l~~~l~   68 (269)
T TIGR03015        31 AMAYLEYGLS-QREGFILITGEVGAGKTTLIRNLLKRLD   68 (269)
T ss_pred             HHHHHHHHHh-cCCCEEEEEcCCCCCHHHHHHHHHHhcC
Confidence            3444433333 2334899999999999999999998764

Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.

>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.50  E-value=4.6e-05  Score=55.72  Aligned_cols=41  Identities=27%  Similarity=0.404  Sum_probs=33.6

Q ss_pred             HHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          161 ISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       161 ~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      ++++...+..++  .+.+.|++|+|||||.+.+|.++.+++|+
T Consensus        27 ~~~vslsV~aGE--CvvL~G~SG~GKStllr~LYaNY~~d~G~   67 (235)
T COG4778          27 LRNVSLSVNAGE--CVVLHGPSGSGKSTLLRSLYANYLPDEGQ   67 (235)
T ss_pred             eeceeEEecCcc--EEEeeCCCCCcHHHHHHHHHhccCCCCce
Confidence            344445555677  89999999999999999999999988765

>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

Probab=97.50  E-value=0.00011  Score=45.82  Aligned_cols=23  Identities=39%  Similarity=0.674  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhh
Q 037945          175 VIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       175 vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      +|.|.|+.|+||||+++.+.+..
T Consensus         1 ~i~i~G~~gsGKst~~~~l~~~l   23 (69)
T cd02019           1 IIAITGGSGSGKSTVAKKLAEQL   23 (69)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHh
Confidence            47899999999999999998764

Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.

>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family

Probab=97.49  E-value=0.0002  Score=65.43  Aligned_cols=47  Identities=26%  Similarity=0.343  Sum_probs=40.7

Q ss_pred             CCCccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          151 IGKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       151 ~~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      ...++|++.++.+++..|......-+-++|++|+|||||++.+....
T Consensus       186 ld~~iGr~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i  232 (852)
T TIGR03345       186 IDPVLGRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRI  232 (852)
T ss_pred             CCcccCCHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHH
Confidence            45689999999999998887665567799999999999999988765

Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=97.49  E-value=3.2e-05  Score=67.21  Aligned_cols=38  Identities=21%  Similarity=0.311  Sum_probs=32.6

Q ss_pred             HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcC
Q 037945          160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRD  199 (206)
Q Consensus       160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~  199 (206)
                      .++++...+..++  +++|+|++|+|||||++.|.+...+
T Consensus        24 ~l~~isl~i~~Ge--~~~iiG~nGsGKSTLl~~i~G~~~~   61 (529)
T PRK15134         24 VVNDVSLQIEAGE--TLALVGESGSGKSVTALSILRLLPS   61 (529)
T ss_pred             eeeceEEEEeCCC--EEEEECCCCCcHHHHHHHHhcCCCC
Confidence            5666777777788  9999999999999999999998764

>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.49  E-value=4.6e-05  Score=60.63  Aligned_cols=42  Identities=31%  Similarity=0.443  Sum_probs=34.6

Q ss_pred             HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      .++++...+..++  +.+|+|.+|.|||||+++|..-.+|.+|.
T Consensus        21 al~~vsL~I~~Ge--I~GIIG~SGAGKSTLiR~iN~Le~PtsG~   62 (339)
T COG1135          21 ALDDVSLEIPKGE--IFGIIGYSGAGKSTLLRLINLLERPTSGS   62 (339)
T ss_pred             eeccceEEEcCCc--EEEEEcCCCCcHHHHHHHHhccCCCCCce
Confidence            4455566666788  99999999999999999999888887664

>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]

Probab=97.48  E-value=6.9e-05  Score=55.34  Aligned_cols=49  Identities=24%  Similarity=0.318  Sum_probs=37.8

Q ss_pred             CCccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCC
Q 037945          152 GKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEH  202 (206)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~  202 (206)
                      .+.||....++-++..-..++  ||+|+|.+|+||||+.+.|.--..|..|
T Consensus        13 HK~~G~~eVLKGvSL~A~~Gd--VisIIGsSGSGKSTfLRCiN~LE~P~~G   61 (256)
T COG4598          13 HKRYGEHEVLKGVSLQANAGD--VISIIGSSGSGKSTFLRCINFLEKPSAG   61 (256)
T ss_pred             HhhcccchhhcceeeecCCCC--EEEEecCCCCchhHHHHHHHhhcCCCCc
Confidence            456777666666665556678  9999999999999999999866655544

>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein

Probab=97.48  E-value=4.7e-05  Score=68.46  Aligned_cols=43  Identities=23%  Similarity=0.371  Sum_probs=36.8

Q ss_pred             HHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          159 SIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       159 ~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      ..++++...+..++  +++|+|++|+|||||++.+.+..++.+|.
T Consensus       495 ~vL~~isl~i~~Ge--~vaIvG~SGsGKSTLl~lL~gl~~p~~G~  537 (711)
T TIGR00958       495 PVLKGLTFTLHPGE--VVALVGPSGSGKSTVAALLQNLYQPTGGQ  537 (711)
T ss_pred             ccccCceEEEcCCC--EEEEECCCCCCHHHHHHHHHhccCCCCCE
Confidence            35677777777888  99999999999999999999998887664

>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional

Probab=97.48  E-value=3.5e-05  Score=63.00  Aligned_cols=37  Identities=22%  Similarity=0.374  Sum_probs=30.9

Q ss_pred             HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945          160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFR  198 (206)
Q Consensus       160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~  198 (206)
                      .++++...+..++  +++|+|.+|+|||||++.|.+-..
T Consensus        22 ~l~~vsl~i~~Ge--~~~ivG~sGsGKSTLl~~i~Gl~~   58 (330)
T PRK15093         22 AVDRVSMTLTEGE--IRGLVGESGSGKSLIAKAICGVTK   58 (330)
T ss_pred             EEeeeEEEECCCC--EEEEECCCCCCHHHHHHHHHccCC
Confidence            4556666666788  999999999999999999998764

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=97.47  E-value=8.6e-05  Score=61.76  Aligned_cols=36  Identities=28%  Similarity=0.403  Sum_probs=29.7

Q ss_pred             HhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          166 RCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       166 ~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      ..+..++  +++|+|++|+|||||++.|.+...+.+|.
T Consensus        45 f~i~~Ge--i~~I~G~nGsGKSTLlr~L~Gl~~p~~G~   80 (382)
T TIGR03415        45 LDIEEGE--ICVLMGLSGSGKSSLLRAVNGLNPVSRGS   80 (382)
T ss_pred             EEEcCCC--EEEEECCCCCcHHHHHHHHhCCCCCCCcE
Confidence            3344566  99999999999999999999988776554

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2

Probab=97.47  E-value=4.4e-05  Score=60.82  Aligned_cols=41  Identities=29%  Similarity=0.452  Sum_probs=33.2

Q ss_pred             HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      .++++...+..++  +++|+|++|+|||||++.|++-... +|.
T Consensus        19 ~l~~isl~I~~Ge--~~~IvG~nGsGKSTLl~~L~gl~~~-~G~   59 (275)
T cd03289          19 VLENISFSISPGQ--RVGLLGRTGSGKSTLLSAFLRLLNT-EGD   59 (275)
T ss_pred             ceeceEEEEcCCC--EEEEECCCCCCHHHHHHHHhhhcCC-CcE
Confidence            4566666677788  9999999999999999999987653 353

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]

Probab=97.47  E-value=0.00021  Score=62.68  Aligned_cols=47  Identities=23%  Similarity=0.373  Sum_probs=38.8

Q ss_pred             CCCccchHHHHHHHHHhhhc----CC--CeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          151 IGKTVGLDSIISEVWRCIED----HN--EKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       151 ~~~~~g~~~~~~~l~~~L~~----~~--~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      ....||.+...++|++.|-=    ++  =.++.+|||+|+|||+|++.|..-.
T Consensus       322 d~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al  374 (782)
T COG0466         322 DKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKAL  374 (782)
T ss_pred             cccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHh
Confidence            35689999999999988752    22  2499999999999999999998765

>CHL00095 clpC Clp protease ATP binding subunit

Probab=97.47  E-value=0.0002  Score=65.47  Aligned_cols=47  Identities=23%  Similarity=0.363  Sum_probs=39.8

Q ss_pred             CCCccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          151 IGKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       151 ~~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      ...++|++.+++.++..|.....+-+-++|++|+|||++++.+....
T Consensus       178 ~~~~igr~~ei~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~la~~i  224 (821)
T CHL00095        178 LDPVIGREKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRI  224 (821)
T ss_pred             CCCCCCcHHHHHHHHHHHcccccCCeEEECCCCCCHHHHHHHHHHHH
Confidence            35689999999999999987554466799999999999999887764

>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]

Probab=97.46  E-value=0.00014  Score=59.21  Aligned_cols=33  Identities=30%  Similarity=0.414  Sum_probs=27.6

Q ss_pred             HhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945          166 RCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFR  198 (206)
Q Consensus       166 ~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~  198 (206)
                      ..+..+.+..+-+||++|+||||||+.|.+..+
T Consensus       155 s~ieq~~ipSmIlWGppG~GKTtlArlia~tsk  187 (554)
T KOG2028|consen  155 SLIEQNRIPSMILWGPPGTGKTTLARLIASTSK  187 (554)
T ss_pred             HHHHcCCCCceEEecCCCCchHHHHHHHHhhcC
Confidence            334457788999999999999999999988654

>PHA02544 44 clamp loader, small subunit; Provisional

Probab=97.44  E-value=0.00022  Score=57.82  Aligned_cols=47  Identities=19%  Similarity=0.123  Sum_probs=39.4

Q ss_pred             CCCccchHHHHHHHHHhhhcCCC-eEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          151 IGKTVGLDSIISEVWRCIEDHNE-KVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       151 ~~~~~g~~~~~~~l~~~L~~~~~-~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      ...++|.+...+.+..++..+.. +.+-++|++|+||||+++.+++..
T Consensus        20 ~~~~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~   67 (316)
T PHA02544         20 IDECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEV   67 (316)
T ss_pred             HHHhcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHh
Confidence            35588999999999999888764 466679999999999999998764

>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein

Probab=97.44  E-value=5.6e-05  Score=67.99  Aligned_cols=51  Identities=18%  Similarity=0.225  Sum_probs=39.9

Q ss_pred             CCCccch--HHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          151 IGKTVGL--DSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       151 ~~~~~g~--~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      .+..|+.  ...++++...+..++  .|+|+|++|+|||||++.+.+...|.+|.
T Consensus       483 vsf~y~~~~~~vL~~isl~i~~Ge--~vaIvG~sGsGKSTLlklL~gl~~p~~G~  535 (710)
T TIGR03796       483 ITFGYSPLEPPLIENFSLTLQPGQ--RVALVGGSGSGKSTIAKLVAGLYQPWSGE  535 (710)
T ss_pred             EEEecCCCCCCcccceeEEEcCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCcE
Confidence            3444542  346777777777788  99999999999999999999988876553

This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.

>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional

Probab=97.43  E-value=0.00011  Score=61.06  Aligned_cols=50  Identities=26%  Similarity=0.325  Sum_probs=36.0

Q ss_pred             CCccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          152 GKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      ...+|....++++...+..++  +++|+|++|+|||||++.|.+-..+.+|.
T Consensus        26 ~~~~~~~~~l~~vsl~i~~Ge--~~~llGpsGsGKSTLLr~IaGl~~p~~G~   75 (377)
T PRK11607         26 TKSFDGQHAVDDVSLTIYKGE--IFALLGASGCGKSTLLRMLAGFEQPTAGQ   75 (377)
T ss_pred             EEEECCEEEEeeeEEEEcCCC--EEEEECCCCCcHHHHHHHHhCCCCCCceE
Confidence            334443223444555555677  99999999999999999999988776553

>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA

Probab=97.43  E-value=0.00028  Score=63.72  Aligned_cols=47  Identities=21%  Similarity=0.299  Sum_probs=40.3

Q ss_pred             CCCccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          151 IGKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       151 ~~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      ...++|++.++.+++..|......-+-++|++|+|||++++.+....
T Consensus       181 l~~~igr~~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~  227 (731)
T TIGR02639       181 IDPLIGREDELERTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRI  227 (731)
T ss_pred             CCcccCcHHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHH
Confidence            45689999999999998887655567799999999999999988765

>PRK14961 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.43  E-value=0.00032  Score=58.15  Aligned_cols=46  Identities=24%  Similarity=0.323  Sum_probs=39.4

Q ss_pred             CCccchHHHHHHHHHhhhcCCC-eEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          152 GKTVGLDSIISEVWRCIEDHNE-KVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~~~~-~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      ..++|.+..++.+...+..+.+ +.+-++|+.|+||||+|+.+....
T Consensus        16 ~~iiGq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l   62 (363)
T PRK14961         16 RDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSL   62 (363)
T ss_pred             hhccChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHh
Confidence            5589999999999998887664 467899999999999999988765

>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit

Probab=97.43  E-value=5.9e-05  Score=65.53  Aligned_cols=43  Identities=28%  Similarity=0.298  Sum_probs=36.2

Q ss_pred             HHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          159 SIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       159 ~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      ..++++...+..++  .++|+|++|+|||||++.+.+..++.+|.
T Consensus       336 ~il~~i~l~i~~G~--~~~ivG~sGsGKSTL~~ll~g~~~~~~G~  378 (529)
T TIGR02857       336 PALRPVSFTVPPGE--RVALVGPSGAGKSTLLNLLLGFVDPTEGS  378 (529)
T ss_pred             ccccceeEEECCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCcE
Confidence            35677777777788  99999999999999999999988876553

Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD

>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda

Probab=97.42  E-value=0.00034  Score=53.82  Aligned_cols=41  Identities=17%  Similarity=0.336  Sum_probs=32.8

Q ss_pred             hHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          157 LDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       157 ~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      ....++.+..++.......+-|+|+.|+||||||+.+++..
T Consensus        22 ~~~~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~   62 (226)
T TIGR03420        22 NAELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAA   62 (226)
T ss_pred             cHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence            45567777777655555689999999999999999998765

Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.

>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=97.42  E-value=6e-05  Score=66.14  Aligned_cols=43  Identities=23%  Similarity=0.400  Sum_probs=36.6

Q ss_pred             HHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          159 SIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       159 ~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      ..++++...+..++  .++|+|++|+|||||++.+.+...+.+|.
T Consensus       354 ~il~~i~~~i~~G~--~~aivG~sGsGKSTL~~ll~g~~~p~~G~  396 (574)
T PRK11160        354 PVLKGLSLQIKAGE--KVALLGRTGCGKSTLLQLLTRAWDPQQGE  396 (574)
T ss_pred             cceecceEEECCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCce
Confidence            35677777777788  99999999999999999999988876664

>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.42  E-value=5.2e-05  Score=58.88  Aligned_cols=42  Identities=36%  Similarity=0.421  Sum_probs=33.0

Q ss_pred             HHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCC
Q 037945          159 SIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEH  202 (206)
Q Consensus       159 ~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~  202 (206)
                      ..++++...+..++  .++|+|++|+|||||++++.+-..+.+|
T Consensus        18 ~~l~~v~~~i~~Ge--~~~i~G~nGsGKSTL~~~l~GLl~p~~G   59 (235)
T COG1122          18 AALKDVSLEIEKGE--RVLLIGPNGSGKSTLLKLLNGLLKPTSG   59 (235)
T ss_pred             eeeeeeEEEECCCC--EEEEECCCCCCHHHHHHHHcCcCcCCCC
Confidence            34445555566677  9999999999999999999988777644

>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional

Probab=97.41  E-value=0.00011  Score=63.24  Aligned_cols=41  Identities=17%  Similarity=0.364  Sum_probs=33.0

Q ss_pred             HHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          161 ISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       161 ~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      ++++...+..++  +++|+|++|+|||||++.|.+...+.+|.
T Consensus        40 L~nVSfsI~~GE--ivgIiGpNGSGKSTLLkiLaGLl~P~sGe   80 (549)
T PRK13545         40 LNNISFEVPEGE--IVGIIGLNGSGKSTLSNLIAGVTMPNKGT   80 (549)
T ss_pred             EeeeEEEEeCCC--EEEEEcCCCCCHHHHHHHHhCCCCCCceE
Confidence            445555556677  99999999999999999999987776553

>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional

Probab=97.40  E-value=3.1e-05  Score=63.29  Aligned_cols=38  Identities=16%  Similarity=0.277  Sum_probs=31.8

Q ss_pred             HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcC
Q 037945          160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRD  199 (206)
Q Consensus       160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~  199 (206)
                      .++++...+..++  +++|+|.+|+|||||++.|.+-..+
T Consensus        31 ~l~~vsl~i~~Ge--~~~ivG~sGsGKSTL~~~l~Gl~~p   68 (330)
T PRK09473         31 AVNDLNFSLRAGE--TLGIVGESGSGKSQTAFALMGLLAA   68 (330)
T ss_pred             EEeeeEEEEcCCC--EEEEECCCCchHHHHHHHHHcCCCC
Confidence            4556666666788  9999999999999999999987755

>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.40  E-value=0.00015  Score=56.88  Aligned_cols=36  Identities=33%  Similarity=0.474  Sum_probs=29.8

Q ss_pred             HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      .++++...+..++  +++|+|++|+|||||++.|++..
T Consensus        18 ~l~~~s~~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~   53 (250)
T PRK14266         18 ILKNVNLDIPKNS--VTALIGPSGCGKSTFIRTLNRMN   53 (250)
T ss_pred             EEeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHHhhh
Confidence            4555555666788  99999999999999999999864

>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

Probab=97.39  E-value=6.2e-05  Score=63.98  Aligned_cols=57  Identities=28%  Similarity=0.359  Sum_probs=47.5

Q ss_pred             CccccCCCCccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          145 PVEERPIGKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       145 ~~~~~~~~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      .......++.||.-..++.+...+..++  |.+++|-||.|||||+|.+.+-..+++|.
T Consensus         8 ll~~~~i~K~FggV~AL~~v~l~v~~GE--V~aL~GeNGAGKSTLmKiLsGv~~p~~G~   64 (500)
T COG1129           8 LLELRGISKSFGGVKALDGVSLTVRPGE--VHALLGENGAGKSTLMKILSGVYPPDSGE   64 (500)
T ss_pred             eeeeecceEEcCCceeeccceeEEeCce--EEEEecCCCCCHHHHHHHHhCcccCCCce
Confidence            3445556777887778888888888899  99999999999999999999988877654

>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family

Probab=97.39  E-value=8.9e-05  Score=66.54  Aligned_cols=43  Identities=28%  Similarity=0.414  Sum_probs=36.2

Q ss_pred             HHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          159 SIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       159 ~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      ..++++...+..++  .++|+|++|+|||||++.+.+...+.+|.
T Consensus       471 ~il~~i~l~i~~G~--~vaivG~sGsGKSTL~~ll~g~~~p~~G~  513 (694)
T TIGR01846       471 EVLSNLNLDIKPGE--FIGIVGPSGSGKSTLTKLLQRLYTPQHGQ  513 (694)
T ss_pred             cccccceEEECCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCce
Confidence            35677777777788  99999999999999999999988876553

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family

Probab=97.38  E-value=6.4e-05  Score=67.44  Aligned_cols=43  Identities=30%  Similarity=0.371  Sum_probs=36.5

Q ss_pred             HHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          159 SIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       159 ~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      ..++++...+..++  .|+|+|++|+|||||++.+.+...+.+|.
T Consensus       479 ~vL~~i~l~i~~G~--~iaIvG~sGsGKSTLlklL~gl~~p~~G~  521 (694)
T TIGR03375       479 PALDNVSLTIRPGE--KVAIIGRIGSGKSTLLKLLLGLYQPTEGS  521 (694)
T ss_pred             cceeeeeEEECCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCce
Confidence            35667777777788  99999999999999999999988876664

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.

>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein

Probab=97.38  E-value=7.4e-05  Score=65.57  Aligned_cols=42  Identities=19%  Similarity=0.296  Sum_probs=35.5

Q ss_pred             HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      .++++...+..++  .++|+|++|+|||||++.+.+...+.+|+
T Consensus       355 iL~~inl~i~~Ge--~i~IvG~sGsGKSTLlklL~gl~~p~~G~  396 (576)
T TIGR02204       355 ALDGLNLTVRPGE--TVALVGPSGAGKSTLFQLLLRFYDPQSGR  396 (576)
T ss_pred             cccceeEEecCCC--EEEEECCCCCCHHHHHHHHHhccCCCCCE
Confidence            5666666677788  99999999999999999999998876553

This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=97.38  E-value=0.00017  Score=48.88  Aligned_cols=20  Identities=35%  Similarity=0.423  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHH
Q 037945          175 VIGLYGMGGVGKTTLLKKLN  194 (206)
Q Consensus       175 vI~IvG~~G~GKTTLa~~i~  194 (206)
                      .++|+|++|+|||||++.+.
T Consensus        17 ~v~I~GpSGsGKSTLl~~l~   36 (107)
T cd00820          17 GVLITGDSGIGKTELALELI   36 (107)
T ss_pred             EEEEEcCCCCCHHHHHHHhh
Confidence            89999999999999999975

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional

Probab=97.37  E-value=6.9e-05  Score=65.94  Aligned_cols=43  Identities=21%  Similarity=0.287  Sum_probs=36.1

Q ss_pred             HHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          159 SIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       159 ~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      ..++++...+..++  .++|+|.+|+|||||++.+.+...+.+|.
T Consensus       349 ~iL~~inl~i~~G~--~v~IvG~sGsGKSTLl~lL~gl~~p~~G~  391 (588)
T PRK13657        349 QGVEDVSFEAKPGQ--TVAIVGPTGAGKSTLINLLQRVFDPQSGR  391 (588)
T ss_pred             ceecceeEEECCCC--EEEEECCCCCCHHHHHHHHhcCcCCCCCE
Confidence            35667767777788  99999999999999999999988876554

>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed

Probab=97.37  E-value=0.00026  Score=63.50  Aligned_cols=46  Identities=37%  Similarity=0.494  Sum_probs=35.8

Q ss_pred             CCccchHHHHH---HHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          152 GKTVGLDSIIS---EVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       152 ~~~~g~~~~~~---~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      ..++|.+..+.   .+...+..+.+.-+-++|++|+||||||+.+++..
T Consensus        28 dd~vGQe~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~   76 (725)
T PRK13341         28 EEFVGQDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHT   76 (725)
T ss_pred             HHhcCcHHHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence            45778776663   45555666777778899999999999999998865

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=97.37  E-value=7e-05  Score=65.08  Aligned_cols=37  Identities=22%  Similarity=0.310  Sum_probs=31.7

Q ss_pred             HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945          160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFR  198 (206)
Q Consensus       160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~  198 (206)
                      .++++...+..++  +++|+|++|+|||||++.+.+-..
T Consensus       301 il~~isl~i~~Ge--~~~i~G~nGsGKSTLlk~l~Gl~~  337 (529)
T PRK15134        301 VVKNISFTLRPGE--TLGLVGESGSGKSTTGLALLRLIN  337 (529)
T ss_pred             eeecceeEEcCCC--EEEEECCCCCCHHHHHHHHhCcCC
Confidence            5667777777788  999999999999999999998653

>PRK10865 protein disaggregation chaperone; Provisional

Probab=97.36  E-value=0.00034  Score=64.09  Aligned_cols=47  Identities=23%  Similarity=0.406  Sum_probs=40.2

Q ss_pred             CCCccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          151 IGKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       151 ~~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      ...++|++.++.+++..|......-+-++|++|+|||||++.+....
T Consensus       177 l~~vigr~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i  223 (857)
T PRK10865        177 LDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRI  223 (857)
T ss_pred             CCcCCCCHHHHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHh
Confidence            45699999999999998887655567799999999999999987764

>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis

Probab=97.36  E-value=0.00033  Score=51.09  Aligned_cols=35  Identities=29%  Similarity=0.376  Sum_probs=28.5

Q ss_pred             HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      .++.|...|.+ .  ++.++|..|+|||||++.+....
T Consensus        25 g~~~l~~~l~~-k--~~vl~G~SGvGKSSLiN~L~~~~   59 (161)
T PF03193_consen   25 GIEELKELLKG-K--TSVLLGQSGVGKSSLINALLPEA   59 (161)
T ss_dssp             THHHHHHHHTT-S--EEEEECSTTSSHHHHHHHHHTSS
T ss_pred             CHHHHHHHhcC-C--EEEEECCCCCCHHHHHHHHHhhc
Confidence            45566666655 4  99999999999999999998864

RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.

>TIGR01192 chvA glucan exporter ATP-binding protein

Probab=97.34  E-value=8.3e-05  Score=65.42  Aligned_cols=51  Identities=22%  Similarity=0.214  Sum_probs=38.4

Q ss_pred             CCCccch-HHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          151 IGKTVGL-DSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       151 ~~~~~g~-~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      .+..|+. ...++++...+..++  .++|+|++|+|||||++.+.+...+.+|+
T Consensus       340 v~~~y~~~~~~l~~i~~~i~~G~--~~~ivG~sGsGKSTL~~ll~g~~~~~~G~  391 (585)
T TIGR01192       340 ITFEFANSSQGVFDVSFEAKAGQ--TVAIVGPTGAGKTTLINLLQRVYDPTVGQ  391 (585)
T ss_pred             EEEECCCCCccccceeEEEcCCC--EEEEECCCCCCHHHHHHHHccCCCCCCCE
Confidence            3334432 235666666667788  99999999999999999999988776553

This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.

>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=97.33  E-value=7.7e-05  Score=65.70  Aligned_cols=42  Identities=24%  Similarity=0.376  Sum_probs=35.5

Q ss_pred             HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      .++++...+..++  .++|+|.+|+|||||++.+.+...|.+|.
T Consensus       356 il~~i~l~i~~Ge--~iaIvG~SGsGKSTLl~lL~gl~~p~~G~  397 (592)
T PRK10790        356 VLQNINLSVPSRG--FVALVGHTGSGKSTLASLLMGYYPLTEGE  397 (592)
T ss_pred             eeeceeEEEcCCC--EEEEECCCCCCHHHHHHHHhcccCCCCce
Confidence            5666666677788  99999999999999999999988876553

>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional

Probab=97.33  E-value=0.00055  Score=54.62  Aligned_cols=33  Identities=27%  Similarity=0.369  Sum_probs=27.5

Q ss_pred             HhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945          166 RCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFR  198 (206)
Q Consensus       166 ~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~  198 (206)
                      .++.+.+..+|.|+|.+|+|||||+..+.+...
T Consensus        97 ~~~~~~~~~~v~l~G~pGsGKTTLl~~l~~~l~  129 (290)
T PRK10463         97 ARFAARKQLVLNLVSSPGSGKTTLLTETLMRLK  129 (290)
T ss_pred             HHHHhcCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence            344456788999999999999999999988754

>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=97.32  E-value=0.00011  Score=56.16  Aligned_cols=37  Identities=24%  Similarity=0.333  Sum_probs=30.2

Q ss_pred             HHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          159 SIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       159 ~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      ..++.+...+..++  +-+|.||||+|||||+..|.+++
T Consensus        18 eILkgvnL~v~~GE--vhaiMGPNGsGKSTLa~~i~G~p   54 (251)
T COG0396          18 EILKGVNLTVKEGE--VHAIMGPNGSGKSTLAYTIMGHP   54 (251)
T ss_pred             hhhcCcceeEcCCc--EEEEECCCCCCHHHHHHHHhCCC
Confidence            44555555566788  89999999999999999999876

>TIGR02881 spore_V_K stage V sporulation protein K

Probab=97.32  E-value=0.00047  Score=54.46  Aligned_cols=25  Identities=32%  Similarity=0.367  Sum_probs=21.2

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          173 EKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       173 ~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      ..-+-++|++|+||||+|+.+++..
T Consensus        42 ~~~vll~GppGtGKTtlA~~ia~~l   66 (261)
T TIGR02881        42 VLHMIFKGNPGTGKTTVARILGKLF   66 (261)
T ss_pred             cceEEEEcCCCCCHHHHHHHHHHHH
Confidence            4467899999999999999997653

Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.

>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=97.32  E-value=5.9e-05  Score=66.34  Aligned_cols=42  Identities=24%  Similarity=0.290  Sum_probs=34.0

Q ss_pred             HHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          159 SIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       159 ~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      ..++++...+..++  .++|+|++|+|||||++.+.+.. |.+|.
T Consensus       364 ~vL~~i~l~i~~G~--~vaIvG~SGsGKSTL~~lL~g~~-p~~G~  405 (588)
T PRK11174        364 TLAGPLNFTLPAGQ--RIALVGPSGAGKTSLLNALLGFL-PYQGS  405 (588)
T ss_pred             eeeeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhcCC-CCCcE
Confidence            34566666666788  99999999999999999999988 65554

>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA

Probab=97.31  E-value=0.0001  Score=64.54  Aligned_cols=42  Identities=21%  Similarity=0.365  Sum_probs=35.0

Q ss_pred             HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      .++++...+..++  .++|+|.+|+|||||++.+.+...+.+|.
T Consensus       347 il~~inl~i~~G~--~v~IvG~sGsGKSTLl~lL~gl~~~~~G~  388 (571)
T TIGR02203       347 ALDSISLVIEPGE--TVALVGRSGSGKSTLVNLIPRFYEPDSGQ  388 (571)
T ss_pred             cccCeeEEecCCC--EEEEECCCCCCHHHHHHHHHhccCCCCCe
Confidence            4566666667788  99999999999999999999988776554

This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.

>PRK13531 regulatory ATPase RavA; Provisional

Probab=97.30  E-value=0.00046  Score=58.74  Aligned_cols=43  Identities=16%  Similarity=0.160  Sum_probs=38.7

Q ss_pred             CccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          153 KTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       153 ~~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      .++|++..++.+...+..++  -+-+.|++|+||||||+.+....
T Consensus        21 ~i~gre~vI~lll~aalag~--hVLL~GpPGTGKT~LAraLa~~~   63 (498)
T PRK13531         21 GLYERSHAIRLCLLAALSGE--SVFLLGPPGIAKSLIARRLKFAF   63 (498)
T ss_pred             hccCcHHHHHHHHHHHccCC--CEEEECCCChhHHHHHHHHHHHh
Confidence            47899999999999998888  89999999999999999998754

>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]

Probab=97.30  E-value=0.00016  Score=61.17  Aligned_cols=57  Identities=18%  Similarity=0.268  Sum_probs=42.9

Q ss_pred             CccccCCCCccc-hHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          145 PVEERPIGKTVG-LDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       145 ~~~~~~~~~~~g-~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      .+...+.+..|. ....+.++...+..++  .|++||++|.||||+.+.++...++.+|.
T Consensus       537 ~i~fsnvtF~Y~p~k~vl~disF~v~pGk--tvAlVG~SGaGKSTimRlLfRffdv~sGs  594 (790)
T KOG0056|consen  537 KIEFSNVTFAYDPGKPVLSDISFTVQPGK--TVALVGPSGAGKSTIMRLLFRFFDVNSGS  594 (790)
T ss_pred             eEEEEEeEEecCCCCceeecceEEecCCc--EEEEECCCCCchhHHHHHHHHHhhccCce
Confidence            344444444443 3346677777777788  99999999999999999999988887664

>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]

Probab=97.30  E-value=0.0029  Score=55.89  Aligned_cols=47  Identities=21%  Similarity=0.384  Sum_probs=39.2

Q ss_pred             CCCccchHHHHHHHHHhhhc----C--CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          151 IGKTVGLDSIISEVWRCIED----H--NEKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       151 ~~~~~g~~~~~~~l~~~L~~----~--~~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      ....||+++..++|++.|-=    +  +=+++..+||+|+|||++++.|..-.
T Consensus       410 deDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~AL  462 (906)
T KOG2004|consen  410 DEDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARAL  462 (906)
T ss_pred             cccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHh
Confidence            45689999999999998752    1  23499999999999999999998765

>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter

Probab=97.30  E-value=9.4e-05  Score=64.68  Aligned_cols=42  Identities=21%  Similarity=0.307  Sum_probs=35.2

Q ss_pred             HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      .++++...+..++  .++|+|++|+|||||++.+.+...|.+|.
T Consensus       357 ~l~~vs~~i~~G~--~~aivG~sGsGKSTl~~ll~g~~~p~~G~  398 (555)
T TIGR01194       357 ALGPIDLRIAQGD--IVFIVGENGCGKSTLAKLFCGLYIPQEGE  398 (555)
T ss_pred             eeccceEEEcCCc--EEEEECCCCCCHHHHHHHHhCCCCCCCcE
Confidence            5666666667788  99999999999999999999988776554

This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.

>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends

Probab=97.28  E-value=0.00021  Score=54.76  Aligned_cols=20  Identities=30%  Similarity=0.576  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHH
Q 037945          175 VIGLYGMGGVGKTTLLKKLN  194 (206)
Q Consensus       175 vI~IvG~~G~GKTTLa~~i~  194 (206)
                      +++|+|++|+|||||++.|.
T Consensus        30 ~~~i~G~NGsGKSTll~~i~   49 (213)
T cd03279          30 LFLICGPTGAGKSTILDAIT   49 (213)
T ss_pred             EEEEECCCCCCHHHHHHHhe
Confidence            99999999999999999976

They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.

>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.27  E-value=0.00012  Score=62.32  Aligned_cols=52  Identities=23%  Similarity=0.331  Sum_probs=42.2

Q ss_pred             CccccCCCCccchHH-HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945          145 PVEERPIGKTVGLDS-IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFR  198 (206)
Q Consensus       145 ~~~~~~~~~~~g~~~-~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~  198 (206)
                      .+.+.++...||.+. .+..+...+..++  .++|+|.+|+||||+++.++...+
T Consensus       351 ~I~F~dV~f~y~~k~~iL~gvsf~I~kGe--kVaIvG~nGsGKSTilr~LlrF~d  403 (591)
T KOG0057|consen  351 SIEFDDVHFSYGPKRKVLKGVSFTIPKGE--KVAIVGSNGSGKSTILRLLLRFFD  403 (591)
T ss_pred             cEEEEeeEEEeCCCCceecceeEEecCCC--EEEEECCCCCCHHHHHHHHHHHhc
Confidence            345555566777665 7777888888888  999999999999999999988765

>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=97.27  E-value=0.00021  Score=54.28  Aligned_cols=42  Identities=21%  Similarity=0.400  Sum_probs=33.3

Q ss_pred             HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      .+..+.-.+.+++  .|.|+|.||+|||||++.|.++..+++|+
T Consensus        21 ~l~~~sL~I~~g~--FvtViGsNGAGKSTlln~iaG~l~~t~G~   62 (263)
T COG1101          21 ALNGLSLEIAEGD--FVTVIGSNGAGKSTLLNAIAGDLKPTSGQ   62 (263)
T ss_pred             HHhcCceeecCCc--eEEEEcCCCccHHHHHHHhhCccccCCce
Confidence            3344444445577  99999999999999999999999887664

>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei

Probab=97.26  E-value=0.00011  Score=65.55  Aligned_cols=43  Identities=19%  Similarity=0.249  Sum_probs=34.7

Q ss_pred             HHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          159 SIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       159 ~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      ..++++...+..++  +++|+|++|+|||||++.+.+...+.+|.
T Consensus       466 ~il~~isl~i~~Ge--~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~  508 (659)
T TIGR00954       466 VLIESLSFEVPSGN--HLLICGPNGCGKSSLFRILGELWPVYGGR  508 (659)
T ss_pred             eeeecceEEECCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCCe
Confidence            35666666666788  99999999999999999999987665453

>PRK10787 DNA-binding ATP-dependent protease La; Provisional

Probab=97.26  E-value=0.0025  Score=57.93  Aligned_cols=46  Identities=22%  Similarity=0.346  Sum_probs=38.0

Q ss_pred             CCccchHHHHHHHHHhhhc------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          152 GKTVGLDSIISEVWRCIED------HNEKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~------~~~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      ...||.+..++.|+.+|.-      ..-.++.++|++|+||||+++.|.+..
T Consensus       322 ~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l  373 (784)
T PRK10787        322 TDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKAT  373 (784)
T ss_pred             hhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence            4589999999999877762      223489999999999999999998764

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=97.25  E-value=0.00038  Score=42.26  Aligned_cols=21  Identities=38%  Similarity=0.563  Sum_probs=18.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHh
Q 037945          175 VIGLYGMGGVGKTTLLKKLNN  195 (206)
Q Consensus       175 vI~IvG~~G~GKTTLa~~i~~  195 (206)
                      +..|.|++|+|||||.-.+.-
T Consensus        25 ~tli~G~nGsGKSTllDAi~~   45 (62)
T PF13555_consen   25 VTLITGPNGSGKSTLLDAIQT   45 (62)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            799999999999999987643

>PRK14956 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.25  E-value=0.00049  Score=58.56  Aligned_cols=46  Identities=22%  Similarity=0.343  Sum_probs=39.5

Q ss_pred             CCccchHHHHHHHHHhhhcCCCe-EEEEEcCCCCcHHHHHHHHHhhh
Q 037945          152 GKTVGLDSIISEVWRCIEDHNEK-VIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~~~~~-vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      ..++|.+..+..|...+..+.+. .+-++|+.|+||||+|+.+....
T Consensus        18 ~dvVGQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~L   64 (484)
T PRK14956         18 RDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRL   64 (484)
T ss_pred             HHHhChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence            45889998999999999888753 68899999999999999997754

>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB

Probab=97.24  E-value=0.00057  Score=62.73  Aligned_cols=47  Identities=23%  Similarity=0.396  Sum_probs=39.8

Q ss_pred             CCCccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          151 IGKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       151 ~~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      ...++|++.++.+++..|......-+-++|++|+|||++++.+....
T Consensus       172 ~~~~igr~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i  218 (852)
T TIGR03346       172 LDPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRI  218 (852)
T ss_pred             CCcCCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHH
Confidence            45689999999999999877655567799999999999999987764

Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=97.23  E-value=9e-05  Score=62.27  Aligned_cols=51  Identities=24%  Similarity=0.285  Sum_probs=39.4

Q ss_pred             CCCccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          151 IGKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       151 ~~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      .++.||.-...+++...+..++  +=++.|-||.|||||++.+|+-.+|++|.
T Consensus        10 itK~f~~~~And~V~l~v~~Ge--IHaLLGENGAGKSTLm~iL~G~~~P~~Ge   60 (501)
T COG3845          10 ITKRFPGVVANDDVSLSVKKGE--IHALLGENGAGKSTLMKILFGLYQPDSGE   60 (501)
T ss_pred             cEEEcCCEEecCceeeeecCCc--EEEEeccCCCCHHHHHHHHhCcccCCcce
Confidence            3445553334555666667788  89999999999999999999999988664

>PRK14955 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.23  E-value=0.00062  Score=57.11  Aligned_cols=46  Identities=17%  Similarity=0.200  Sum_probs=38.7

Q ss_pred             CCccchHHHHHHHHHhhhcCCCe-EEEEEcCCCCcHHHHHHHHHhhh
Q 037945          152 GKTVGLDSIISEVWRCIEDHNEK-VIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~~~~~-vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      ..++|.+...+.|...+..+.+. -+-++|+.|+||||+|+.+....
T Consensus        16 ~eiiGq~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l   62 (397)
T PRK14955         16 ADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAV   62 (397)
T ss_pred             hhccChHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHh
Confidence            45889998888898888887654 58899999999999999887654

>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=97.23  E-value=0.0001  Score=63.12  Aligned_cols=44  Identities=27%  Similarity=0.383  Sum_probs=36.5

Q ss_pred             HHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCCC
Q 037945          159 SIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHDF  204 (206)
Q Consensus       159 ~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~F  204 (206)
                      ....++...+..++  .++|||.+|+|||||++.+.+...+.+|.+
T Consensus       335 ~~l~~l~~t~~~g~--~talvG~SGaGKSTLl~lL~G~~~~~~G~I  378 (559)
T COG4988         335 PALSDLNLTIKAGQ--LTALVGASGAGKSTLLNLLLGFLAPTQGEI  378 (559)
T ss_pred             cccCCceeEecCCc--EEEEECCCCCCHHHHHHHHhCcCCCCCceE
Confidence            45666666677777  999999999999999999999988766654

>PLN02796 D-glycerate 3-kinase

Probab=97.23  E-value=0.00032  Score=57.21  Aligned_cols=28  Identities=39%  Similarity=0.445  Sum_probs=24.2

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhhhcC
Q 037945          172 NEKVIGLYGMGGVGKTTLLKKLNNKFRD  199 (206)
Q Consensus       172 ~~~vI~IvG~~G~GKTTLa~~i~~~~~~  199 (206)
                      ..-+|+|.|+.|+|||||++.+.+....
T Consensus        99 ~pliIGI~G~sGSGKSTLa~~L~~lL~~  126 (347)
T PLN02796         99 PPLVIGISAPQGCGKTTLVFALVYLFNA  126 (347)
T ss_pred             CCEEEEEECCCCCcHHHHHHHHHHHhcc
Confidence            3568999999999999999999987653

>TIGR01242 26Sp45 26S proteasome subunit P45 family

Probab=97.19  E-value=0.00076  Score=55.91  Aligned_cols=46  Identities=33%  Similarity=0.421  Sum_probs=36.0

Q ss_pred             CccchHHHHHHHHHhhhc-------------CCCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945          153 KTVGLDSIISEVWRCIED-------------HNEKVIGLYGMGGVGKTTLLKKLNNKFR  198 (206)
Q Consensus       153 ~~~g~~~~~~~l~~~L~~-------------~~~~vI~IvG~~G~GKTTLa~~i~~~~~  198 (206)
                      .++|.+..++.|...+.-             ...+-+.++|++|+||||||+.+++...
T Consensus       123 di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~  181 (364)
T TIGR01242       123 DIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETN  181 (364)
T ss_pred             HhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCC
Confidence            478888888888776631             1234588999999999999999998653

Many proteins may score above the trusted cutoff because an internal

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=97.18  E-value=0.00047  Score=56.04  Aligned_cols=28  Identities=43%  Similarity=0.635  Sum_probs=24.1

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhhhcC
Q 037945          172 NEKVIGLYGMGGVGKTTLLKKLNNKFRD  199 (206)
Q Consensus       172 ~~~vI~IvG~~G~GKTTLa~~i~~~~~~  199 (206)
                      ...+|+++|++|+||||++..+......
T Consensus       113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~  140 (318)
T PRK10416        113 KPFVILVVGVNGVGKTTTIGKLAHKYKA  140 (318)
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHHh
Confidence            3569999999999999999999877654

>PRK14957 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.18  E-value=0.00068  Score=58.88  Aligned_cols=46  Identities=24%  Similarity=0.341  Sum_probs=38.8

Q ss_pred             CCccchHHHHHHHHHhhhcCCC-eEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          152 GKTVGLDSIISEVWRCIEDHNE-KVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~~~~-~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      ..++|.+..+..|...+..+.+ +.+-++|+.|+||||+|+.+....
T Consensus        16 ~diiGq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L   62 (546)
T PRK14957         16 AEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCL   62 (546)
T ss_pred             HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            4588999999999999988664 457899999999999999998754

>PRK08084 DNA replication initiation factor; Provisional

Probab=97.17  E-value=0.00097  Score=51.89  Aligned_cols=45  Identities=20%  Similarity=0.328  Sum_probs=31.3

Q ss_pred             Cccch-HHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          153 KTVGL-DSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       153 ~~~g~-~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      .++|. ...+..+..+........+-|+|+.|+|||+|++.+++..
T Consensus        24 f~~~~n~~a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~   69 (235)
T PRK08084         24 FYPGDNDSLLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAEL   69 (235)
T ss_pred             cccCccHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence            34452 3345445454444444588999999999999999988754

>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]

Probab=97.16  E-value=0.00051  Score=52.81  Aligned_cols=45  Identities=22%  Similarity=0.242  Sum_probs=39.5

Q ss_pred             CCccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhh
Q 037945          152 GKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNK  196 (206)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~  196 (206)
                      ..+||.++.++.+.-...+++..-+-|.||+|+||||=+..+.+.
T Consensus        27 ~dIVGNe~tv~rl~via~~gnmP~liisGpPG~GKTTsi~~LAr~   71 (333)
T KOG0991|consen   27 QDIVGNEDTVERLSVIAKEGNMPNLIISGPPGTGKTTSILCLARE   71 (333)
T ss_pred             HHhhCCHHHHHHHHHHHHcCCCCceEeeCCCCCchhhHHHHHHHH
Confidence            458999999999999999999889999999999999977766554

>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.15  E-value=0.00034  Score=59.74  Aligned_cols=25  Identities=44%  Similarity=0.521  Sum_probs=22.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945          174 KVIGLYGMGGVGKTTLLKKLNNKFR  198 (206)
Q Consensus       174 ~vI~IvG~~G~GKTTLa~~i~~~~~  198 (206)
                      .+|+++|++|+||||++.++.....
T Consensus       257 ~Vi~LvGpnGvGKTTTiaKLA~~~~  281 (484)
T PRK06995        257 GVFALMGPTGVGKTTTTAKLAARCV  281 (484)
T ss_pred             cEEEEECCCCccHHHHHHHHHHHHH
Confidence            4999999999999999999987653

>PLN03211 ABC transporter G-25; Provisional

Probab=97.15  E-value=8.4e-05  Score=66.16  Aligned_cols=43  Identities=23%  Similarity=0.417  Sum_probs=32.8

Q ss_pred             cchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcC
Q 037945          155 VGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRD  199 (206)
Q Consensus       155 ~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~  199 (206)
                      ++....++++...+..++  +++|+|++|+|||||++.+.+...+
T Consensus        78 ~~~~~iL~~vs~~i~~Ge--~~aI~GpnGaGKSTLL~iLaG~~~~  120 (659)
T PLN03211         78 IQERTILNGVTGMASPGE--ILAVLGPSGSGKSTLLNALAGRIQG  120 (659)
T ss_pred             CCCCeeeeCCEEEEECCE--EEEEECCCCCCHHHHHHHHhCCCCC
Confidence            443345555555556677  9999999999999999999987654

>TIGR03238 dnd_assoc_3 dnd system-associated protein 3

Probab=97.14  E-value=0.00025  Score=60.02  Aligned_cols=31  Identities=29%  Similarity=0.430  Sum_probs=23.3

Q ss_pred             hhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCC
Q 037945          168 IEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEH  202 (206)
Q Consensus       168 L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~  202 (206)
                      +..++  +++|+|++|+|||||++  .+...+.+|
T Consensus        29 i~~GE--iv~L~G~SGsGKSTLLr--~~l~~~~sG   59 (504)
T TIGR03238        29 LPSSS--LLFLCGSSGDGKSEILA--ENKRKFSEG   59 (504)
T ss_pred             ecCCC--EEEEECCCCCCHHHHHh--cCCCCCCCC
Confidence            44567  99999999999999999  344444433

cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.

>PRK08727 hypothetical protein; Validated

Probab=97.14  E-value=0.0014  Score=50.89  Aligned_cols=45  Identities=20%  Similarity=0.219  Sum_probs=31.4

Q ss_pred             CccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          153 KTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       153 ~~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      .++|..+....+..........-+.|+|+.|+|||+|++.+++..
T Consensus        21 f~~~~~n~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~a~~~~~   65 (233)
T PRK08727         21 YIAAPDGLLAQLQALAAGQSSDWLYLSGPAGTGKTHLALALCAAA   65 (233)
T ss_pred             ccCCcHHHHHHHHHHHhccCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence            345555555544443333333479999999999999999998764

>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.13  E-value=0.00039  Score=56.87  Aligned_cols=37  Identities=27%  Similarity=0.453  Sum_probs=31.0

Q ss_pred             HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945          160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFR  198 (206)
Q Consensus       160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~  198 (206)
                      .++++...+..++  +++|+|++|+|||||++.+++...
T Consensus        97 ~L~~is~~I~~Ge--~v~IvG~~GsGKSTLl~~L~g~~~  133 (329)
T PRK14257         97 VLHDLNLDIKRNK--VTAFIGPSGCGKSTFLRNLNQLND  133 (329)
T ss_pred             eeeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhcccc
Confidence            4556666666788  999999999999999999998764

>PRK14963 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.13  E-value=0.00073  Score=58.30  Aligned_cols=47  Identities=19%  Similarity=0.249  Sum_probs=39.5

Q ss_pred             CCccchHHHHHHHHHhhhcCCC-eEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945          152 GKTVGLDSIISEVWRCIEDHNE-KVIGLYGMGGVGKTTLLKKLNNKFR  198 (206)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~~~~-~vI~IvG~~G~GKTTLa~~i~~~~~  198 (206)
                      ..++|.+.....|...+..+.+ +.+-++|+.|+||||+|+.+.....
T Consensus        14 ~dvvGq~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~   61 (504)
T PRK14963         14 DEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVN   61 (504)
T ss_pred             HHhcChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence            4588999889989998888764 4669999999999999999887653

>TIGR00767 rho transcription termination factor Rho

Probab=97.12  E-value=0.0005  Score=57.16  Aligned_cols=32  Identities=19%  Similarity=0.157  Sum_probs=26.8

Q ss_pred             cCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCc
Q 037945          170 DHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHDFD  205 (206)
Q Consensus       170 ~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~Fd  205 (206)
                      .++  .++|+|++|+|||||++.|++....  ++|+
T Consensus       167 ~Gq--~~~IvG~~g~GKTtL~~~i~~~I~~--nhfd  198 (415)
T TIGR00767       167 KGQ--RGLIVAPPKAGKTVLLQKIAQAITR--NHPE  198 (415)
T ss_pred             CCC--EEEEECCCCCChhHHHHHHHHhhcc--cCCc
Confidence            356  9999999999999999999998753  3564

Members of this family differ in the specificity of RNA binding.

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=97.11  E-value=0.00023  Score=68.58  Aligned_cols=52  Identities=21%  Similarity=0.305  Sum_probs=40.7

Q ss_pred             CCCCccch---HHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          150 PIGKTVGL---DSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       150 ~~~~~~g~---~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      +++..|+.   ...++++...+..++  +++|+|++|+|||||++++.+...+.+|.
T Consensus       387 nVsf~Y~~~~~~~vL~~isl~i~~Ge--~vaIvG~SGsGKSTLl~lL~gl~~p~~G~  441 (1466)
T PTZ00265        387 NVRFHYDTRKDVEIYKDLNFTLTEGK--TYAFVGESGCGKSTILKLIERLYDPTEGD  441 (1466)
T ss_pred             EEEEEcCCCCCCceeccceEEEcCCC--EEEEECCCCCCHHHHHHHHHHhccCCCCe
Confidence            34445542   136777777777888  99999999999999999999988877664

>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins

Probab=97.11  E-value=0.0016  Score=45.41  Aligned_cols=45  Identities=18%  Similarity=0.306  Sum_probs=34.8

Q ss_pred             CccchHHHHHHHHHhhhc-------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          153 KTVGLDSIISEVWRCIED-------HNEKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       153 ~~~g~~~~~~~l~~~L~~-------~~~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      .++|.+-..+.++..|.+       ...-|++..|.+|+|||.++++|.+..
T Consensus        26 ~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~l   77 (127)
T PF06309_consen   26 NLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHL   77 (127)
T ss_pred             HccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence            367776666666666553       356799999999999999999988774

Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor

>PRK01889 GTPase RsgA; Reviewed

Probab=97.11  E-value=0.00078  Score=55.69  Aligned_cols=41  Identities=22%  Similarity=0.289  Sum_probs=33.4

Q ss_pred             HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCC
Q 037945          160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEH  202 (206)
Q Consensus       160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~  202 (206)
                      -++.|..+|..+.  +++++|.+|+|||||++.+.+...+..|
T Consensus       184 gl~~L~~~L~~g~--~~~lvG~sgvGKStLin~L~g~~~~~~G  224 (356)
T PRK01889        184 GLDVLAAWLSGGK--TVALLGSSGVGKSTLVNALLGEEVQKTG  224 (356)
T ss_pred             cHHHHHHHhhcCC--EEEEECCCCccHHHHHHHHHHhccccee
Confidence            3667777777777  9999999999999999999987655434

>TIGR02858 spore_III_AA stage III sporulation protein AA

Probab=97.09  E-value=0.00073  Score=53.61  Aligned_cols=42  Identities=17%  Similarity=0.152  Sum_probs=31.0

Q ss_pred             HHHHHhhh-cCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          162 SEVWRCIE-DHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       162 ~~l~~~L~-~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      +.++..+. .++..-++|+|++|+|||||++.+.+...+.+|.
T Consensus        99 ~~~l~~l~~~~~~~~~~i~g~~g~GKttl~~~l~~~~~~~~G~  141 (270)
T TIGR02858        99 DKLLPYLVRNNRVLNTLIISPPQCGKTTLLRDLARILSTGISQ  141 (270)
T ss_pred             HHHHHHHHhCCCeeEEEEEcCCCCCHHHHHHHHhCccCCCCce
Confidence            33333443 3556689999999999999999999887665443

Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.

>CHL00081 chlI Mg-protoporyphyrin IX chelatase

Probab=97.09  E-value=0.00076  Score=55.36  Aligned_cols=47  Identities=19%  Similarity=0.237  Sum_probs=39.8

Q ss_pred             CCccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945          152 GKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFR  198 (206)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~  198 (206)
                      +.++|.+..+.-|...+.+..+.-|-|.|..|+||||+++.+++...
T Consensus        17 ~~ivGq~~~k~al~~~~~~p~~~~vli~G~~GtGKs~~ar~~~~~l~   63 (350)
T CHL00081         17 TAIVGQEEMKLALILNVIDPKIGGVMIMGDRGTGKSTTIRALVDLLP   63 (350)
T ss_pred             HHHhChHHHHHHHHHhccCCCCCeEEEEcCCCCCHHHHHHHHHHHHh
Confidence            56899998888888888787766677999999999999999987653

>PRK14949 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.09  E-value=0.00084  Score=60.95  Aligned_cols=46  Identities=20%  Similarity=0.343  Sum_probs=39.4

Q ss_pred             CCccchHHHHHHHHHhhhcCCCe-EEEEEcCCCCcHHHHHHHHHhhh
Q 037945          152 GKTVGLDSIISEVWRCIEDHNEK-VIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~~~~~-vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      ..++|.+..+..|.+.+..+.+. .+-++|+.|+||||+|+.+....
T Consensus        16 ddIIGQe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~L   62 (944)
T PRK14949         16 EQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGL   62 (944)
T ss_pred             HHhcCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence            45899999999999988887655 46899999999999999998765

>PRK05896 DNA polymerase III subunits gamma and tau; Validated

Probab=97.05  E-value=0.0011  Score=57.94  Aligned_cols=46  Identities=20%  Similarity=0.281  Sum_probs=38.7

Q ss_pred             CCccchHHHHHHHHHhhhcCCC-eEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          152 GKTVGLDSIISEVWRCIEDHNE-KVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~~~~-~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      ..++|.+..+..+...+..+.+ +-+-++|+.|+||||+|+.+....
T Consensus        16 ~dIIGQe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L   62 (605)
T PRK05896         16 KQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAI   62 (605)
T ss_pred             HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence            4588999999999998877654 468899999999999999987654

>PRK03992 proteasome-activating nucleotidase; Provisional

Probab=97.05  E-value=0.0011  Score=55.50  Aligned_cols=45  Identities=36%  Similarity=0.430  Sum_probs=35.3

Q ss_pred             CccchHHHHHHHHHhhhc-------------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          153 KTVGLDSIISEVWRCIED-------------HNEKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       153 ~~~g~~~~~~~l~~~L~~-------------~~~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      .+.|.+..++++...+.-             ...+-|-++|++|+|||+||+.+++..
T Consensus       132 di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~  189 (389)
T PRK03992        132 DIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHET  189 (389)
T ss_pred             HhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHh
Confidence            467888888887776531             224568899999999999999998865

>PRK14964 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.04  E-value=0.001  Score=57.01  Aligned_cols=45  Identities=27%  Similarity=0.285  Sum_probs=38.1

Q ss_pred             CCccchHHHHHHHHHhhhcCCCe-EEEEEcCCCCcHHHHHHHHHhh
Q 037945          152 GKTVGLDSIISEVWRCIEDHNEK-VIGLYGMGGVGKTTLLKKLNNK  196 (206)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~~~~~-vI~IvG~~G~GKTTLa~~i~~~  196 (206)
                      ..++|.+..+..+.+.+..+.+. -+-++|+.|+||||+|+.+...
T Consensus        13 ~dliGQe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~   58 (491)
T PRK14964         13 KDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLC   58 (491)
T ss_pred             HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHH
Confidence            45899998888888888877654 7889999999999999988653

>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.04  E-value=0.00058  Score=57.39  Aligned_cols=23  Identities=48%  Similarity=0.574  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhh
Q 037945          174 KVIGLYGMGGVGKTTLLKKLNNK  196 (206)
Q Consensus       174 ~vI~IvG~~G~GKTTLa~~i~~~  196 (206)
                      .+|+++|++|+||||++..+.+.
T Consensus       192 ~vi~lvGpnG~GKTTtlakLA~~  214 (420)
T PRK14721        192 GVYALIGPTGVGKTTTTAKLAAR  214 (420)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            39999999999999999988764

>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes

Probab=97.04  E-value=0.0006  Score=51.67  Aligned_cols=21  Identities=38%  Similarity=0.493  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHH
Q 037945          174 KVIGLYGMGGVGKTTLLKKLN  194 (206)
Q Consensus       174 ~vI~IvG~~G~GKTTLa~~i~  194 (206)
                      +++.|.|+||+|||||.+.|.
T Consensus        29 ~~~~ltG~Ng~GKStll~~i~   49 (200)
T cd03280          29 RVLVITGPNAGGKTVTLKTLG   49 (200)
T ss_pred             eEEEEECCCCCChHHHHHHHH
Confidence            489999999999999999987

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a

>PLN02318 phosphoribulokinase/uridine kinase

Probab=97.03  E-value=0.00059  Score=59.34  Aligned_cols=27  Identities=30%  Similarity=0.454  Sum_probs=24.1

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          171 HNEKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       171 ~~~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      ++..+|+|.|++|+|||||++.|.+..
T Consensus        63 ~~riIIGIaGpSGSGKTTLAk~LaglL   89 (656)
T PLN02318         63 DGIILVGVAGPSGAGKTVFTEKVLNFM   89 (656)
T ss_pred             CCeEEEEEECCCCCcHHHHHHHHHhhC
Confidence            457799999999999999999998764

>PRK10536 hypothetical protein; Provisional

Probab=97.03  E-value=0.0018  Score=50.80  Aligned_cols=43  Identities=19%  Similarity=0.217  Sum_probs=35.0

Q ss_pred             CCccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhh
Q 037945          152 GKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNK  196 (206)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~  196 (206)
                      ..+.++......++.+|.+.+  .+.+.|++|+|||+|+..+.-+
T Consensus        55 ~~i~p~n~~Q~~~l~al~~~~--lV~i~G~aGTGKT~La~a~a~~   97 (262)
T PRK10536         55 SPILARNEAQAHYLKAIESKQ--LIFATGEAGCGKTWISAAKAAE   97 (262)
T ss_pred             ccccCCCHHHHHHHHHHhcCC--eEEEECCCCCCHHHHHHHHHHH
Confidence            445667777777888887766  9999999999999999987664

>PRK09087 hypothetical protein; Validated

Probab=97.02  E-value=0.0018  Score=50.08  Aligned_cols=25  Identities=36%  Similarity=0.332  Sum_probs=21.5

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          173 EKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       173 ~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      .+.+.|||+.|+|||||++.++...
T Consensus        44 ~~~l~l~G~~GsGKThLl~~~~~~~   68 (226)
T PRK09087         44 SPVVVLAGPVGSGKTHLASIWREKS   68 (226)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHhc
Confidence            3469999999999999999988653

>PRK14970 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.02  E-value=0.0014  Score=54.37  Aligned_cols=46  Identities=30%  Similarity=0.425  Sum_probs=39.5

Q ss_pred             CCccchHHHHHHHHHhhhcCCCe-EEEEEcCCCCcHHHHHHHHHhhh
Q 037945          152 GKTVGLDSIISEVWRCIEDHNEK-VIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~~~~~-vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      ..++|.+...+.+...+..+.+. .+-++|+.|+||||+++.+.+..
T Consensus        17 ~~iig~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l   63 (367)
T PRK14970         17 DDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKI   63 (367)
T ss_pred             HhcCCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            45789999999999999887654 78899999999999999987765

>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.02  E-value=0.00075  Score=56.11  Aligned_cols=26  Identities=46%  Similarity=0.626  Sum_probs=22.6

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945          173 EKVIGLYGMGGVGKTTLLKKLNNKFR  198 (206)
Q Consensus       173 ~~vI~IvG~~G~GKTTLa~~i~~~~~  198 (206)
                      .++|+++|++|+||||++..+.....
T Consensus       241 ~~vI~LVGptGvGKTTTiaKLA~~L~  266 (436)
T PRK11889        241 VQTIALIGPTGVGKTTTLAKMAWQFH  266 (436)
T ss_pred             CcEEEEECCCCCcHHHHHHHHHHHHH
Confidence            46999999999999999999976543

>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch

Probab=97.01  E-value=0.00059  Score=51.78  Aligned_cols=22  Identities=23%  Similarity=0.341  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHh
Q 037945          174 KVIGLYGMGGVGKTTLLKKLNN  195 (206)
Q Consensus       174 ~vI~IvG~~G~GKTTLa~~i~~  195 (206)
                      .+++|.|+||+|||||++.|..
T Consensus        30 ~~~~l~G~Ng~GKStll~~i~~   51 (202)
T cd03243          30 RLLLITGPNMGGKSTYLRSIGL   51 (202)
T ss_pred             eEEEEECCCCCccHHHHHHHHH
Confidence            4999999999999999999984

Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru

>PRK08903 DnaA regulatory inactivator Hda; Validated

Probab=97.01  E-value=0.0016  Score=50.23  Aligned_cols=39  Identities=18%  Similarity=0.380  Sum_probs=27.7

Q ss_pred             HHHHHHHHhhhc-CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          159 SIISEVWRCIED-HNEKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       159 ~~~~~l~~~L~~-~~~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      ..+..+..+... .....+-|+|+.|+|||+||+.+++..
T Consensus        27 ~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~   66 (227)
T PRK08903         27 ELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADA   66 (227)
T ss_pred             HHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence            344444444332 233478899999999999999998865

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.01  E-value=0.00071  Score=56.01  Aligned_cols=24  Identities=46%  Similarity=0.570  Sum_probs=21.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          174 KVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       174 ~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      .++.++|++|+||||++.++....
T Consensus       138 ~ii~lvGptGvGKTTtiakLA~~~  161 (374)
T PRK14722        138 GVFALMGPTGVGKTTTTAKLAARC  161 (374)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHH
Confidence            399999999999999999987653

>PRK14958 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.01  E-value=0.0011  Score=57.22  Aligned_cols=46  Identities=20%  Similarity=0.346  Sum_probs=39.4

Q ss_pred             CCccchHHHHHHHHHhhhcCCCe-EEEEEcCCCCcHHHHHHHHHhhh
Q 037945          152 GKTVGLDSIISEVWRCIEDHNEK-VIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~~~~~-vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      ..++|.+..+..|.+.+..+.+. .+-++|+.|+||||+|+.+....
T Consensus        16 ~divGq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l   62 (509)
T PRK14958         16 QEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCL   62 (509)
T ss_pred             HHhcCCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHh
Confidence            45899999999999999887654 57899999999999999887654

>TIGR03499 FlhF flagellar biosynthetic protein FlhF

Probab=96.99  E-value=0.00073  Score=54.04  Aligned_cols=25  Identities=56%  Similarity=0.739  Sum_probs=21.7

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          173 EKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       173 ~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      ..+|+++|++|+||||++..+....
T Consensus       194 ~~vi~~vGptGvGKTTt~~kLa~~~  218 (282)
T TIGR03499       194 GGVIALVGPTGVGKTTTLAKLAARF  218 (282)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHH
Confidence            3499999999999999999887654

>PRK14951 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.99  E-value=0.0013  Score=57.86  Aligned_cols=45  Identities=22%  Similarity=0.372  Sum_probs=38.3

Q ss_pred             CCccchHHHHHHHHHhhhcCCC-eEEEEEcCCCCcHHHHHHHHHhh
Q 037945          152 GKTVGLDSIISEVWRCIEDHNE-KVIGLYGMGGVGKTTLLKKLNNK  196 (206)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~~~~-~vI~IvG~~G~GKTTLa~~i~~~  196 (206)
                      ..++|.+..+..|.+.+..+.+ +.+-++|+.|+||||+|+.+...
T Consensus        16 ~dviGQe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~   61 (618)
T PRK14951         16 SEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKS   61 (618)
T ss_pred             HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            4588988899999999988765 46789999999999999998544

>PRK14960 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.99  E-value=0.0012  Score=58.12  Aligned_cols=46  Identities=24%  Similarity=0.322  Sum_probs=39.3

Q ss_pred             CCccchHHHHHHHHHhhhcCCC-eEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          152 GKTVGLDSIISEVWRCIEDHNE-KVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~~~~-~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      ..++|.+.....|..++..+.+ +.+-++|+.|+||||+|+.+.+..
T Consensus        15 ddVIGQe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~L   61 (702)
T PRK14960         15 NELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCL   61 (702)
T ss_pred             HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            4589999999999999988764 477899999999999999887654

>TIGR02902 spore_lonB ATP-dependent protease LonB

Probab=96.98  E-value=0.0024  Score=55.65  Aligned_cols=45  Identities=22%  Similarity=0.334  Sum_probs=36.3

Q ss_pred             CCccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhh
Q 037945          152 GKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNK  196 (206)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~  196 (206)
                      ..++|.+..++.+...+......-+-|+|++|+||||+|+.+++.
T Consensus        65 ~~iiGqs~~i~~l~~al~~~~~~~vLi~Ge~GtGKt~lAr~i~~~  109 (531)
T TIGR02902        65 DEIIGQEEGIKALKAALCGPNPQHVIIYGPPGVGKTAAARLVLEE  109 (531)
T ss_pred             HHeeCcHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence            348898888888877776654456789999999999999999763

Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.

>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional

Probab=96.98  E-value=0.0012  Score=59.52  Aligned_cols=47  Identities=21%  Similarity=0.303  Sum_probs=38.7

Q ss_pred             CCCccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          151 IGKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       151 ~~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      ...++|++.++.+++..|....-.-+-++|++|+|||+||+.+....
T Consensus       185 ~~~liGR~~ei~~~i~iL~r~~~~n~LLvGppGvGKT~lae~la~~i  231 (758)
T PRK11034        185 IDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRI  231 (758)
T ss_pred             CCcCcCCCHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHH
Confidence            34689999999999998887433455689999999999999988653

>PRK06645 DNA polymerase III subunits gamma and tau; Validated

Probab=96.98  E-value=0.0014  Score=56.58  Aligned_cols=46  Identities=22%  Similarity=0.241  Sum_probs=38.8

Q ss_pred             CCccchHHHHHHHHHhhhcCCC-eEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          152 GKTVGLDSIISEVWRCIEDHNE-KVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~~~~-~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      ..++|.+..+..+...+..+.+ +-+-++|+.|+||||+|+.++...
T Consensus        21 ~dliGq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~L   67 (507)
T PRK06645         21 AELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAV   67 (507)
T ss_pred             HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence            4588999889888887777654 478899999999999999998765

>cd01854 YjeQ_engC YjeQ/EngC

Probab=96.97  E-value=0.0011  Score=53.11  Aligned_cols=35  Identities=31%  Similarity=0.426  Sum_probs=26.8

Q ss_pred             HHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcC
Q 037945          162 SEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRD  199 (206)
Q Consensus       162 ~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~  199 (206)
                      +.|...|..   ++++++|++|+|||||++.+.+....
T Consensus       153 ~~L~~~L~~---k~~~~~G~sg~GKSTlin~l~~~~~~  187 (287)
T cd01854         153 DELREYLKG---KTSVLVGQSGVGKSTLINALLPDLDL  187 (287)
T ss_pred             HHHHhhhcc---ceEEEECCCCCCHHHHHHHHhchhhc
Confidence            444445543   48999999999999999999876543

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>TIGR00602 rad24 checkpoint protein rad24

Probab=96.97  E-value=0.0012  Score=58.36  Aligned_cols=49  Identities=20%  Similarity=0.294  Sum_probs=38.5

Q ss_pred             cCCCCccchHHHHHHHHHhhhcC-----CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          149 RPIGKTVGLDSIISEVWRCIEDH-----NEKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       149 ~~~~~~~g~~~~~~~l~~~L~~~-----~~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      .....++|.+..++++..++...     .-.++.++|++|+||||+++.+.+..
T Consensus        81 ~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l  134 (637)
T TIGR00602        81 ETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKEL  134 (637)
T ss_pred             CCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            33456788888888888888752     22479999999999999999998764

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau

Probab=96.95  E-value=0.0018  Score=53.24  Aligned_cols=46  Identities=17%  Similarity=0.333  Sum_probs=39.0

Q ss_pred             CCccchHHHHHHHHHhhhcCCC-eEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          152 GKTVGLDSIISEVWRCIEDHNE-KVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~~~~-~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      ..++|.+..++.+...+..+.+ +.+-++|+.|+||||+|+.+....
T Consensus        14 ~~iig~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l   60 (355)
T TIGR02397        14 EDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKAL   60 (355)
T ss_pred             hhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            4588999999999999988764 367899999999999999887664

This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.

>PRK00098 GTPase RsgA; Reviewed

Probab=96.95  E-value=0.0012  Score=53.23  Aligned_cols=35  Identities=34%  Similarity=0.415  Sum_probs=26.5

Q ss_pred             HHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcC
Q 037945          162 SEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRD  199 (206)
Q Consensus       162 ~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~  199 (206)
                      +.|...+. +.  +++++|++|+|||||++.+.+....
T Consensus       156 ~~L~~~l~-gk--~~~~~G~sgvGKStlin~l~~~~~~  190 (298)
T PRK00098        156 DELKPLLA-GK--VTVLAGQSGVGKSTLLNALAPDLEL  190 (298)
T ss_pred             HHHHhhcc-Cc--eEEEECCCCCCHHHHHHHHhCCcCC
Confidence            34444443 44  8999999999999999999876543

>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop

Probab=96.94  E-value=0.0014  Score=45.65  Aligned_cols=34  Identities=29%  Similarity=0.401  Sum_probs=27.0

Q ss_pred             HHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          162 SEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       162 ~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      +.+...|..++  +|.+.|.=|+|||||+|.+....
T Consensus         6 ~~l~~~l~~g~--vi~L~GdLGaGKTtf~r~l~~~l   39 (123)
T PF02367_consen    6 KKLAQILKPGD--VILLSGDLGAGKTTFVRGLARAL   39 (123)
T ss_dssp             HHHHHHHSS-E--EEEEEESTTSSHHHHHHHHHHHT
T ss_pred             HHHHHhCCCCC--EEEEECCCCCCHHHHHHHHHHHc
Confidence            34555666666  99999999999999999987765

They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.

>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional

Probab=96.94  E-value=0.00082  Score=56.34  Aligned_cols=28  Identities=32%  Similarity=0.489  Sum_probs=24.7

Q ss_pred             cCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          170 DHNEKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       170 ~~~~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      ..-.+.|+|+|..|+|||||++.+....
T Consensus       216 ~~~~~~IvI~G~~gsGKTTL~~~La~~~  243 (399)
T PRK08099        216 PFFVRTVAILGGESSGKSTLVNKLANIF  243 (399)
T ss_pred             hCCCcEEEEEcCCCCCHHHHHHHHHHHh
Confidence            4567799999999999999999998764

>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=96.92  E-value=0.00092  Score=49.12  Aligned_cols=33  Identities=24%  Similarity=0.360  Sum_probs=27.5

Q ss_pred             hhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCC
Q 037945          168 IEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEH  202 (206)
Q Consensus       168 L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~  202 (206)
                      +..++  .++|||++|+|||||.-.+.+-..+.+|
T Consensus        33 v~~Ge--~vaiVG~SGSGKSTLl~vlAGLd~~ssG   65 (228)
T COG4181          33 VKRGE--TVAIVGPSGSGKSTLLAVLAGLDDPSSG   65 (228)
T ss_pred             ecCCc--eEEEEcCCCCcHHhHHHHHhcCCCCCCc
Confidence            34567  8999999999999999999887766554

>cd01878 HflX HflX subfamily

Probab=96.91  E-value=0.00093  Score=50.54  Aligned_cols=26  Identities=27%  Similarity=0.381  Sum_probs=22.7

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          172 NEKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       172 ~~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      ....|+|+|.+|+|||||++.+.+..
T Consensus        40 ~~~~I~iiG~~g~GKStLl~~l~~~~   65 (204)
T cd01878          40 GIPTVALVGYTNAGKSTLFNALTGAD   65 (204)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHhcch
Confidence            34589999999999999999998764

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>PLN03046 D-glycerate 3-kinase; Provisional

Probab=96.91  E-value=0.00096  Score=55.77  Aligned_cols=27  Identities=44%  Similarity=0.563  Sum_probs=23.4

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945          172 NEKVIGLYGMGGVGKTTLLKKLNNKFR  198 (206)
Q Consensus       172 ~~~vI~IvG~~G~GKTTLa~~i~~~~~  198 (206)
                      ..-+|+|.|..|+|||||++.|.+-..
T Consensus       211 ~PlIIGIsG~qGSGKSTLa~~L~~lL~  237 (460)
T PLN03046        211 PPLVIGFSAPQGCGKTTLVFALDYLFR  237 (460)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence            467999999999999999999976553

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=96.91  E-value=0.00071  Score=66.86  Aligned_cols=42  Identities=29%  Similarity=0.419  Sum_probs=33.0

Q ss_pred             HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      .++++...+..++  +++|+|++|+|||||+++|.+...+.+|.
T Consensus      1954 aL~~ISf~I~~GE--i~gLLG~NGAGKTTLlkmL~Gll~ptsG~ 1995 (2272)
T TIGR01257      1954 AVDRLCVGVRPGE--CFGLLGVNGAGKTTTFKMLTGDTTVTSGD 1995 (2272)
T ss_pred             EEEeeEEEEcCCc--EEEEECCCCCcHHHHHHHHhCCCCCCccE
Confidence            3444444455566  99999999999999999999998776554

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>PRK06893 DNA replication initiation factor; Validated

Probab=96.90  E-value=0.00097  Score=51.66  Aligned_cols=25  Identities=28%  Similarity=0.541  Sum_probs=22.1

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          173 EKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       173 ~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      ...+-++|++|+|||+|++.+++..
T Consensus        39 ~~~l~l~G~~G~GKThL~~ai~~~~   63 (229)
T PRK06893         39 QPFFYIWGGKSSGKSHLLKAVSNHY   63 (229)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHH
Confidence            3478999999999999999999874

>PRK12323 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.90  E-value=0.0014  Score=57.65  Aligned_cols=46  Identities=26%  Similarity=0.397  Sum_probs=39.5

Q ss_pred             CCccchHHHHHHHHHhhhcCCCe-EEEEEcCCCCcHHHHHHHHHhhh
Q 037945          152 GKTVGLDSIISEVWRCIEDHNEK-VIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~~~~~-vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      ..++|.+..+..|.+.+..+.+. .+-++|+.|+||||+++.+.+..
T Consensus        16 ddVIGQe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaL   62 (700)
T PRK12323         16 TTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSL   62 (700)
T ss_pred             HHHcCcHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHh
Confidence            45899999999999999887654 67899999999999999987654

>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=96.90  E-value=0.00038  Score=55.77  Aligned_cols=37  Identities=22%  Similarity=0.376  Sum_probs=31.2

Q ss_pred             HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945          160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFR  198 (206)
Q Consensus       160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~  198 (206)
                      .++++...+..++  +++|||-+|+||||+++.|.+-..
T Consensus        20 av~~vs~~i~~GE--~lgiVGESGsGKS~~~~aim~llp   56 (316)
T COG0444          20 AVDGVSFELKKGE--ILGIVGESGSGKSVLAKAIMGLLP   56 (316)
T ss_pred             EEeceeEEEcCCc--EEEEEcCCCCCHHHHHHHHHhccC
Confidence            4556666677788  999999999999999999998654

>PRK14954 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.88  E-value=0.0018  Score=57.17  Aligned_cols=46  Identities=17%  Similarity=0.226  Sum_probs=38.6

Q ss_pred             CCccchHHHHHHHHHhhhcCCC-eEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          152 GKTVGLDSIISEVWRCIEDHNE-KVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~~~~-~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      ..++|.+..+..|...+..+.+ +-+-++|+.|+||||+|+.+....
T Consensus        16 ~eivGQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L   62 (620)
T PRK14954         16 ADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAV   62 (620)
T ss_pred             HHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHh
Confidence            4588999899989998888765 458899999999999999887654

>CHL00181 cbbX CbbX; Provisional

Probab=96.88  E-value=0.0024  Score=51.24  Aligned_cols=23  Identities=30%  Similarity=0.469  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhh
Q 037945          175 VIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       175 vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      .+-++|++|+||||+|+.+++..
T Consensus        61 ~ill~G~pGtGKT~lAr~la~~~   83 (287)
T CHL00181         61 HMSFTGSPGTGKTTVALKMADIL   83 (287)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHH
Confidence            47889999999999999997653

>PLN03232 ABC transporter C family member; Provisional

Probab=96.87  E-value=0.00038  Score=67.38  Aligned_cols=43  Identities=16%  Similarity=0.291  Sum_probs=37.1

Q ss_pred             HHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          159 SIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       159 ~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      ..++++...+..++  .|+|||..|+|||||++.+.+-.++.+|.
T Consensus      1250 ~vL~~isl~I~~Ge--kvaIVG~SGSGKSTL~~lL~rl~~p~~G~ 1292 (1495)
T PLN03232       1250 PVLHGLSFFVSPSE--KVGVVGRTGAGKSSMLNALFRIVELEKGR 1292 (1495)
T ss_pred             cccccceEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCcCCCce
Confidence            46777777778888  99999999999999999999988776554

>PRK09183 transposase/IS protein; Provisional

Probab=96.87  E-value=0.0011  Score=52.45  Aligned_cols=28  Identities=43%  Similarity=0.485  Sum_probs=22.5

Q ss_pred             hhcCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          168 IEDHNEKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       168 L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      +..+.  .+.|+|++|+|||+|+..+.+..
T Consensus        99 i~~~~--~v~l~Gp~GtGKThLa~al~~~a  126 (259)
T PRK09183         99 IERNE--NIVLLGPSGVGKTHLAIALGYEA  126 (259)
T ss_pred             hhcCC--eEEEEeCCCCCHHHHHHHHHHHH
Confidence            33444  78899999999999999997653

>PLN02165 adenylate isopentenyltransferase

Probab=96.86  E-value=0.0012  Score=53.73  Aligned_cols=29  Identities=31%  Similarity=0.589  Sum_probs=23.9

Q ss_pred             hcCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          169 EDHNEKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       169 ~~~~~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      ....-.+|.|+|++|+|||||+..+....
T Consensus        39 ~~~~g~iivIiGPTGSGKStLA~~LA~~l   67 (334)
T PLN02165         39 QNCKDKVVVIMGATGSGKSRLSVDLATRF   67 (334)
T ss_pred             cCCCCCEEEEECCCCCcHHHHHHHHHHHc
Confidence            33334499999999999999999998774

>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional

Probab=96.86  E-value=0.0019  Score=54.08  Aligned_cols=47  Identities=30%  Similarity=0.374  Sum_probs=35.1

Q ss_pred             CCccchHHHHHHHHHhhh----c---------CCCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945          152 GKTVGLDSIISEVWRCIE----D---------HNEKVIGLYGMGGVGKTTLLKKLNNKFR  198 (206)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~----~---------~~~~vI~IvG~~G~GKTTLa~~i~~~~~  198 (206)
                      ..+.|.+..++.|...+.    .         ...+-+.++|++|+|||+||+.+.+...
T Consensus       145 ~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~  204 (398)
T PTZ00454        145 SDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTT  204 (398)
T ss_pred             HHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcC
Confidence            346788777777666543    1         1345788999999999999999998653

>cd01855 YqeH YqeH

Probab=96.86  E-value=0.0025  Score=47.74  Aligned_cols=42  Identities=24%  Similarity=0.343  Sum_probs=33.1

Q ss_pred             ccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          154 TVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       154 ~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      -.|.+..++.|...+..+.  .+.++|.+|+|||||.+.+.+..
T Consensus       110 ~~gi~eL~~~l~~~l~~~~--~~~~~G~~nvGKStliN~l~~~~  151 (190)
T cd01855         110 GWGVEELINAIKKLAKKGG--DVYVVGATNVGKSTLINALLKKD  151 (190)
T ss_pred             CCCHHHHHHHHHHHhhcCC--cEEEEcCCCCCHHHHHHHHHHhc
Confidence            3466777777777665444  79999999999999999998753

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>PRK14969 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.86  E-value=0.0018  Score=56.22  Aligned_cols=46  Identities=26%  Similarity=0.420  Sum_probs=39.0

Q ss_pred             CCccchHHHHHHHHHhhhcCCCe-EEEEEcCCCCcHHHHHHHHHhhh
Q 037945          152 GKTVGLDSIISEVWRCIEDHNEK-VIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~~~~~-vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      ..++|.+..+..+.+++..+.+. .+-++|+.|+||||+|+.+....
T Consensus        16 ~divGq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l   62 (527)
T PRK14969         16 SELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSL   62 (527)
T ss_pred             HHhcCcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence            45889999999999999887654 56899999999999999987654

>PLN02348 phosphoribulokinase

Probab=96.85  E-value=0.0013  Score=54.49  Aligned_cols=27  Identities=37%  Similarity=0.667  Sum_probs=24.1

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          171 HNEKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       171 ~~~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      +..-+|+|.|.+|+|||||++.|.+..
T Consensus        47 ~~p~IIGIaG~SGSGKSTfA~~L~~~L   73 (395)
T PLN02348         47 DGTVVIGLAADSGCGKSTFMRRLTSVF   73 (395)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            456799999999999999999998765

>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]

Probab=96.85  E-value=0.001  Score=56.80  Aligned_cols=37  Identities=24%  Similarity=0.435  Sum_probs=30.8

Q ss_pred             hhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCcC
Q 037945          168 IEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHDFDL  206 (206)
Q Consensus       168 L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~Fd~  206 (206)
                      |..++  ..++||+||+||||+.+.|++...|-..+||+
T Consensus        98 l~~g~--rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~  134 (614)
T KOG0927|consen   98 LNRGR--RYGLIGPNGSGKSTFLRAIAGREVPIPEHIDF  134 (614)
T ss_pred             ecCCc--eEEEEcCCCCcHhHHHHHHhcCCCCCCcccch
Confidence            44566  89999999999999999999988776566664

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=96.84  E-value=0.0027  Score=51.83  Aligned_cols=36  Identities=31%  Similarity=0.493  Sum_probs=27.3

Q ss_pred             HHHHhhh--cCCCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945          163 EVWRCIE--DHNEKVIGLYGMGGVGKTTLLKKLNNKFR  198 (206)
Q Consensus       163 ~l~~~L~--~~~~~vI~IvG~~G~GKTTLa~~i~~~~~  198 (206)
                      .++..+.  .+...+|+|.|++|+|||||+..+.....
T Consensus        44 ~l~~~~~~~~~~~~~igi~G~~GaGKSTl~~~l~~~l~   81 (332)
T PRK09435         44 ELLDALLPHTGNALRIGITGVPGVGKSTFIEALGMHLI   81 (332)
T ss_pred             HHHHHHhhcCCCcEEEEEECCCCCCHHHHHHHHHHHHH
Confidence            4444443  35677999999999999999998766553

>PRK14952 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.83  E-value=0.0021  Score=56.42  Aligned_cols=46  Identities=17%  Similarity=0.276  Sum_probs=39.4

Q ss_pred             CCccchHHHHHHHHHhhhcCCCe-EEEEEcCCCCcHHHHHHHHHhhh
Q 037945          152 GKTVGLDSIISEVWRCIEDHNEK-VIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~~~~~-vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      ..++|.+..++.|.+.+..+.+. .+-++|+.|+||||+|+.+....
T Consensus        13 ~eivGq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l   59 (584)
T PRK14952         13 AEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSL   59 (584)
T ss_pred             HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            45899999999999999887654 57899999999999999987654

>PRK08691 DNA polymerase III subunits gamma and tau; Validated

Probab=96.83  E-value=0.0018  Score=57.52  Aligned_cols=45  Identities=24%  Similarity=0.412  Sum_probs=38.9

Q ss_pred             CCccchHHHHHHHHHhhhcCCCe-EEEEEcCCCCcHHHHHHHHHhh
Q 037945          152 GKTVGLDSIISEVWRCIEDHNEK-VIGLYGMGGVGKTTLLKKLNNK  196 (206)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~~~~~-vI~IvG~~G~GKTTLa~~i~~~  196 (206)
                      ..++|.+..+..|.+++..+.+. -+-++|+.|+||||+|+.+...
T Consensus        16 ddIIGQe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~   61 (709)
T PRK08691         16 ADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKS   61 (709)
T ss_pred             HHHcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHH
Confidence            45899999999999999887654 6899999999999999988765

>PRK06620 hypothetical protein; Validated

Probab=96.82  E-value=0.0011  Score=50.78  Aligned_cols=24  Identities=29%  Similarity=0.181  Sum_probs=21.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          174 KVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       174 ~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      ..+-|+|+.|+|||+|++.+.+..
T Consensus        45 ~~l~l~Gp~G~GKThLl~a~~~~~   68 (214)
T PRK06620         45 FTLLIKGPSSSGKTYLTKIWQNLS   68 (214)
T ss_pred             ceEEEECCCCCCHHHHHHHHHhcc
Confidence            468999999999999999987754

>cd01858 NGP_1 NGP-1

Probab=96.82  E-value=0.0026  Score=46.17  Aligned_cols=44  Identities=25%  Similarity=0.441  Sum_probs=29.5

Q ss_pred             cchHHHHHHHHHhhh---cCCCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945          155 VGLDSIISEVWRCIE---DHNEKVIGLYGMGGVGKTTLLKKLNNKFR  198 (206)
Q Consensus       155 ~g~~~~~~~l~~~L~---~~~~~vI~IvG~~G~GKTTLa~~i~~~~~  198 (206)
                      .|.+..++.+...+.   ...-..|+++|++|+|||||.+.+.+...
T Consensus        81 ~~~~~L~~~l~~~~~~~~~~~~~~v~~~G~~nvGKStliN~l~~~~~  127 (157)
T cd01858          81 FGKGSLIQLLRQFSKLHSDKKQISVGFIGYPNVGKSSIINTLRSKKV  127 (157)
T ss_pred             ccHHHHHHHHHHHHhhhccccceEEEEEeCCCCChHHHHHHHhcCCc
Confidence            344444554444332   12234688999999999999999988643

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length

Probab=96.82  E-value=0.0024  Score=52.16  Aligned_cols=46  Identities=20%  Similarity=0.371  Sum_probs=38.9

Q ss_pred             CCccchHHHHHHHHHhhhc------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          152 GKTVGLDSIISEVWRCIED------HNEKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~------~~~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      ..++|.+..++++++.+..      ..-+++-++||.|.|||||+..+-.-.
T Consensus        61 ~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~l  112 (358)
T PF08298_consen   61 DEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGL  112 (358)
T ss_pred             ccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHh
Confidence            3589999999999999875      234699999999999999999986644

PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.

>PRK05439 pantothenate kinase; Provisional

Probab=96.81  E-value=0.0014  Score=52.99  Aligned_cols=26  Identities=31%  Similarity=0.372  Sum_probs=22.6

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhh
Q 037945          171 HNEKVIGLYGMGGVGKTTLLKKLNNK  196 (206)
Q Consensus       171 ~~~~vI~IvG~~G~GKTTLa~~i~~~  196 (206)
                      +...+|+|-|.+|+||||+++.+..-
T Consensus        84 ~~~~iIgIaG~~gsGKSTla~~L~~~  109 (311)
T PRK05439         84 KVPFIIGIAGSVAVGKSTTARLLQAL  109 (311)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            45679999999999999999988764

>PRK07994 DNA polymerase III subunits gamma and tau; Validated

Probab=96.81  E-value=0.0022  Score=56.81  Aligned_cols=46  Identities=22%  Similarity=0.361  Sum_probs=38.9

Q ss_pred             CCccchHHHHHHHHHhhhcCCCe-EEEEEcCCCCcHHHHHHHHHhhh
Q 037945          152 GKTVGLDSIISEVWRCIEDHNEK-VIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~~~~~-vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      ..++|.+..+..|...+..+.+. .+-++|+.|+||||+|+.+....
T Consensus        16 ~divGQe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L   62 (647)
T PRK07994         16 AEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGL   62 (647)
T ss_pred             HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence            55899999999999999887753 46899999999999999886654

>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

Probab=96.80  E-value=0.0013  Score=55.27  Aligned_cols=32  Identities=34%  Similarity=0.669  Sum_probs=27.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCc
Q 037945          174 KVIGLYGMGGVGKTTLLKKLNNKFRDTEHDFD  205 (206)
Q Consensus       174 ~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~Fd  205 (206)
                      +|++|+|+||+||||-++.+.+...|.=|.|+
T Consensus       101 ~V~GilG~NGiGKsTalkILaGel~PNLG~~~  132 (591)
T COG1245         101 KVVGILGPNGIGKSTALKILAGELKPNLGRYE  132 (591)
T ss_pred             cEEEEEcCCCccHHHHHHHHhCccccCCCCCC
Confidence            39999999999999999999998877545543

>PLN02200 adenylate kinase family protein

Probab=96.79  E-value=0.0015  Score=50.81  Aligned_cols=26  Identities=27%  Similarity=0.309  Sum_probs=22.4

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          172 NEKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       172 ~~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      ...+|.|.|++|+||||+++.+....
T Consensus        42 ~~~ii~I~G~PGSGKsT~a~~La~~~   67 (234)
T PLN02200         42 TPFITFVLGGPGSGKGTQCEKIVETF   67 (234)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence            34589999999999999999987654

>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit

Probab=96.79  E-value=0.0028  Score=53.14  Aligned_cols=47  Identities=26%  Similarity=0.332  Sum_probs=35.3

Q ss_pred             CCccchHHHHHHHHHhhhcC--------------CCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945          152 GKTVGLDSIISEVWRCIEDH--------------NEKVIGLYGMGGVGKTTLLKKLNNKFR  198 (206)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~~--------------~~~vI~IvG~~G~GKTTLa~~i~~~~~  198 (206)
                      ..++|.+..+..+...+..+              ..+-|-++|++|+|||||++.+.....
T Consensus        12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~   72 (441)
T TIGR00390        12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLAN   72 (441)
T ss_pred             hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence            45778877777766555431              135788999999999999999987653

This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.

>PRK14974 cell division protein FtsY; Provisional

Probab=96.78  E-value=0.0016  Score=53.29  Aligned_cols=27  Identities=37%  Similarity=0.529  Sum_probs=22.6

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945          172 NEKVIGLYGMGGVGKTTLLKKLNNKFR  198 (206)
Q Consensus       172 ~~~vI~IvG~~G~GKTTLa~~i~~~~~  198 (206)
                      ...+|.++|++|+||||++..+.....
T Consensus       139 ~~~vi~~~G~~GvGKTTtiakLA~~l~  165 (336)
T PRK14974        139 KPVVIVFVGVNGTGKTTTIAKLAYYLK  165 (336)
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            467999999999999998888776543

>PLN03130 ABC transporter C family member; Provisional

Probab=96.77  E-value=0.00059  Score=66.50  Aligned_cols=43  Identities=19%  Similarity=0.282  Sum_probs=37.0

Q ss_pred             HHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          159 SIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       159 ~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      ..++++...+..++  .|+|||..|+|||||++.+++-.++.+|.
T Consensus      1253 ~VL~~is~~I~~Ge--kVaIVGrSGSGKSTLl~lL~rl~~p~~G~ 1295 (1622)
T PLN03130       1253 PVLHGLSFEISPSE--KVGIVGRTGAGKSSMLNALFRIVELERGR 1295 (1622)
T ss_pred             ceecceeEEEcCCC--EEEEECCCCCCHHHHHHHHhCcCCCCCce
Confidence            46777777788888  99999999999999999999988776554

>PRK06305 DNA polymerase III subunits gamma and tau; Validated

Probab=96.77  E-value=0.0029  Score=53.99  Aligned_cols=46  Identities=20%  Similarity=0.371  Sum_probs=39.3

Q ss_pred             CCccchHHHHHHHHHhhhcCCC-eEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          152 GKTVGLDSIISEVWRCIEDHNE-KVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~~~~-~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      ..++|.+..+..+...+..+.+ +.+-++|+.|+||||+|+.+....
T Consensus        17 ~diiGq~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l   63 (451)
T PRK06305         17 SEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKAL   63 (451)
T ss_pred             HHhcCcHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHh
Confidence            4588999999999999988765 568899999999999999887654

>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11

Probab=96.77  E-value=0.002  Score=52.23  Aligned_cols=28  Identities=36%  Similarity=0.449  Sum_probs=23.9

Q ss_pred             cCCCeEEEEEcCCCCcHHHHHHHHHhhhcC
Q 037945          170 DHNEKVIGLYGMGGVGKTTLLKKLNNKFRD  199 (206)
Q Consensus       170 ~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~  199 (206)
                      .+.  .|.|+|++|+|||||++.+.+...+
T Consensus       143 ~~~--~ili~G~tGsGKTTll~al~~~~~~  170 (308)
T TIGR02788       143 SRK--NIIISGGTGSGKTTFLKSLVDEIPK  170 (308)
T ss_pred             CCC--EEEEECCCCCCHHHHHHHHHccCCc
Confidence            355  9999999999999999999877643

The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.

>PRK12727 flagellar biosynthesis regulator FlhF; Provisional

Probab=96.76  E-value=0.0024  Score=55.00  Aligned_cols=23  Identities=48%  Similarity=0.663  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhh
Q 037945          174 KVIGLYGMGGVGKTTLLKKLNNK  196 (206)
Q Consensus       174 ~vI~IvG~~G~GKTTLa~~i~~~  196 (206)
                      .+|+|+|++|+||||++..+...
T Consensus       351 ~vIaLVGPtGvGKTTtaakLAa~  373 (559)
T PRK12727        351 GVIALVGPTGAGKTTTIAKLAQR  373 (559)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            39999999999999999887654

>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional

Probab=96.76  E-value=0.0026  Score=53.95  Aligned_cols=45  Identities=36%  Similarity=0.469  Sum_probs=34.1

Q ss_pred             CccchHHHHHHHHHhhh----c---------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          153 KTVGLDSIISEVWRCIE----D---------HNEKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       153 ~~~g~~~~~~~l~~~L~----~---------~~~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      .+.|.+..++.|...+.    .         ...+-+.++|++|+|||+||+.|.+..
T Consensus       184 DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el  241 (438)
T PTZ00361        184 DIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANET  241 (438)
T ss_pred             HhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence            36678877777766653    1         123467899999999999999999865

>PRK14950 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.76  E-value=0.0027  Score=56.01  Aligned_cols=46  Identities=22%  Similarity=0.344  Sum_probs=38.7

Q ss_pred             CCccchHHHHHHHHHhhhcCCC-eEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          152 GKTVGLDSIISEVWRCIEDHNE-KVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~~~~-~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      ..++|.+..++.|..++..+.+ +.+-++|+.|+||||+|+.+....
T Consensus        16 ~eiiGq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l   62 (585)
T PRK14950         16 AELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAV   62 (585)
T ss_pred             HHhcCCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHh
Confidence            4588999999999888887664 456899999999999999987654

>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional

Probab=96.76  E-value=0.0035  Score=52.61  Aligned_cols=47  Identities=26%  Similarity=0.324  Sum_probs=36.6

Q ss_pred             CCccchHHHHHHHHHhhhc---------C-----CCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945          152 GKTVGLDSIISEVWRCIED---------H-----NEKVIGLYGMGGVGKTTLLKKLNNKFR  198 (206)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~---------~-----~~~vI~IvG~~G~GKTTLa~~i~~~~~  198 (206)
                      ..++|.+..+..+...+..         +     ..+-|-++|+.|+||||||+.+.....
T Consensus        15 ~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~   75 (443)
T PRK05201         15 KYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLAN   75 (443)
T ss_pred             cccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence            4588988888877777643         0     135789999999999999999987653

>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional

Probab=96.76  E-value=0.0011  Score=59.16  Aligned_cols=42  Identities=21%  Similarity=0.299  Sum_probs=33.8

Q ss_pred             HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      .++++...+.+++  .++|+|++|+|||||++.+.+...+.+|.
T Consensus        23 il~~vs~~i~~Ge--~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~   64 (648)
T PRK10535         23 VLKGISLDIYAGE--MVAIVGASGSGKSTLMNILGCLDKPTSGT   64 (648)
T ss_pred             eeeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCeE
Confidence            3445555566778  99999999999999999999988776553

>TIGR00763 lon ATP-dependent protease La

Probab=96.75  E-value=0.0022  Score=58.32  Aligned_cols=47  Identities=23%  Similarity=0.375  Sum_probs=36.9

Q ss_pred             CCccchHHHHHHHHHhhhc------CCCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945          152 GKTVGLDSIISEVWRCIED------HNEKVIGLYGMGGVGKTTLLKKLNNKFR  198 (206)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~------~~~~vI~IvG~~G~GKTTLa~~i~~~~~  198 (206)
                      ..++|.+..++.|..++..      ..-.++.++|++|+||||||+.|.+...
T Consensus       320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~  372 (775)
T TIGR00763       320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALN  372 (775)
T ss_pred             hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhc
Confidence            3478988888888876541      1234799999999999999999998763

This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=96.75  E-value=0.0019  Score=51.35  Aligned_cols=27  Identities=48%  Similarity=0.717  Sum_probs=22.4

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945          172 NEKVIGLYGMGGVGKTTLLKKLNNKFR  198 (206)
Q Consensus       172 ~~~vI~IvG~~G~GKTTLa~~i~~~~~  198 (206)
                      ..++|.++|++|+||||++..+.....
T Consensus        71 ~~~vi~l~G~~G~GKTTt~akLA~~l~   97 (272)
T TIGR00064        71 KPNVILFVGVNGVGKTTTIAKLANKLK   97 (272)
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHH
Confidence            356999999999999998888876553

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>PRK07003 DNA polymerase III subunits gamma and tau; Validated

Probab=96.74  E-value=0.0022  Score=57.33  Aligned_cols=46  Identities=22%  Similarity=0.359  Sum_probs=38.7

Q ss_pred             CCccchHHHHHHHHHhhhcCCC-eEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          152 GKTVGLDSIISEVWRCIEDHNE-KVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~~~~-~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      ..++|.+..++.|.+++..+.+ +.+-++|+.|+||||+++.+.+..
T Consensus        16 dEVIGQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaL   62 (830)
T PRK07003         16 ASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKAL   62 (830)
T ss_pred             HHHcCcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            4589999999999999988764 466799999999999999877654

>PRK13407 bchI magnesium chelatase subunit I; Provisional

Probab=96.73  E-value=0.0027  Score=51.91  Aligned_cols=47  Identities=19%  Similarity=0.263  Sum_probs=36.5

Q ss_pred             CCCccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          151 IGKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       151 ~~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      .+.++|.+..+..+...+.+.+..=+-+.|..|+||||||+.+.+-.
T Consensus         7 f~~i~Gq~~~~~~l~~~~~~~~~~~vLl~G~pG~gKT~lar~la~ll   53 (334)
T PRK13407          7 FSAIVGQEEMKQAMVLTAIDPGIGGVLVFGDRGTGKSTAVRALAALL   53 (334)
T ss_pred             HHHhCCHHHHHHHHHHHHhccCCCcEEEEcCCCCCHHHHHHHHHHHC
Confidence            35688999888877765554333358999999999999999986654

>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components

Probab=96.72  E-value=0.0031  Score=49.31  Aligned_cols=38  Identities=32%  Similarity=0.504  Sum_probs=27.1

Q ss_pred             HHHHHHhhhc--CCCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945          161 ISEVWRCIED--HNEKVIGLYGMGGVGKTTLLKKLNNKFR  198 (206)
Q Consensus       161 ~~~l~~~L~~--~~~~vI~IvG~~G~GKTTLa~~i~~~~~  198 (206)
                      ..+++..+..  ++..+|+|-|++|+|||||+..+...+.
T Consensus        15 ~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~   54 (266)
T PF03308_consen   15 ARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELR   54 (266)
T ss_dssp             HHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHh
Confidence            3445555543  5678999999999999999998766553

In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=96.72  E-value=0.00054  Score=66.33  Aligned_cols=42  Identities=19%  Similarity=0.361  Sum_probs=32.6

Q ss_pred             HHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCCC
Q 037945          161 ISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHDF  204 (206)
Q Consensus       161 ~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~F  204 (206)
                      ++++...+..++  +++|+|++|+|||||++.+.+...+.+|.+
T Consensus       442 l~~i~l~i~~G~--~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i  483 (1490)
T TIGR01271       442 LKNISFKLEKGQ--LLAVAGSTGSGKSSLLMMIMGELEPSEGKI  483 (1490)
T ss_pred             eeeeEEEECCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCceE
Confidence            334444444566  999999999999999999999887766653

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>PRK09111 DNA polymerase III subunits gamma and tau; Validated

Probab=96.72  E-value=0.0028  Score=55.77  Aligned_cols=46  Identities=24%  Similarity=0.374  Sum_probs=39.6

Q ss_pred             CCccchHHHHHHHHHhhhcCCCe-EEEEEcCCCCcHHHHHHHHHhhh
Q 037945          152 GKTVGLDSIISEVWRCIEDHNEK-VIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~~~~~-vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      ..++|.+..+..|.+.+..+.+. -+-++|+.|+||||+|+.+....
T Consensus        24 ~dliGq~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L   70 (598)
T PRK09111         24 DDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARAL   70 (598)
T ss_pred             HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhh
Confidence            55899999999999999887644 68899999999999999987654

>PRK09112 DNA polymerase III subunit delta'; Validated

Probab=96.71  E-value=0.0038  Score=51.51  Aligned_cols=51  Identities=18%  Similarity=0.202  Sum_probs=41.8

Q ss_pred             cccCCCCccchHHHHHHHHHhhhcCCC-eEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          147 EERPIGKTVGLDSIISEVWRCIEDHNE-KVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       147 ~~~~~~~~~g~~~~~~~l~~~L~~~~~-~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      +|.....++|.+.....+...+..+.+ +-+-+.|+.|+||||||..+....
T Consensus        18 ~P~~~~~l~Gh~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~L   69 (351)
T PRK09112         18 SPSENTRLFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHI   69 (351)
T ss_pred             CCCchhhccCcHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHH
Confidence            334445689999999999999988764 468999999999999999877654

>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]

Probab=96.71  E-value=0.00058  Score=57.90  Aligned_cols=42  Identities=26%  Similarity=0.427  Sum_probs=30.2

Q ss_pred             CCccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHh
Q 037945          152 GKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNN  195 (206)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~  195 (206)
                      +-.||....+.+-.-.|..+.  .-|+||.||+|||||.+.|.+
T Consensus        87 dLa~G~k~LL~~a~L~L~~Gr--RYGLvGrNG~GKsTLLRaia~  128 (582)
T KOG0062|consen   87 DLAYGGKILLNKANLTLSRGR--RYGLVGRNGIGKSTLLRAIAN  128 (582)
T ss_pred             eeeecchhhhcCCceeeeccc--ccceeCCCCCcHHHHHHHHHh
Confidence            345675544443333344455  889999999999999999988

>PRK09862 putative ATP-dependent protease; Provisional

Probab=96.70  E-value=0.0019  Score=55.63  Aligned_cols=49  Identities=20%  Similarity=0.243  Sum_probs=38.1

Q ss_pred             CCCCccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCC
Q 037945          150 PIGKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDT  200 (206)
Q Consensus       150 ~~~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~  200 (206)
                      +...++|....+..+......+.  .+.++|++|+|||||++.+.+-..+.
T Consensus       189 d~~~v~Gq~~~~~al~laa~~G~--~llliG~~GsGKTtLak~L~gllpp~  237 (506)
T PRK09862        189 DLSDVIGQEQGKRGLEITAAGGH--NLLLIGPPGTGKTMLASRINGLLPDL  237 (506)
T ss_pred             CeEEEECcHHHHhhhheeccCCc--EEEEECCCCCcHHHHHHHHhccCCCC
Confidence            44567787777777665555566  99999999999999999998876543

>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes

Probab=96.70  E-value=0.0016  Score=49.87  Aligned_cols=23  Identities=22%  Similarity=0.368  Sum_probs=20.6

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHh
Q 037945          173 EKVIGLYGMGGVGKTTLLKKLNN  195 (206)
Q Consensus       173 ~~vI~IvG~~G~GKTTLa~~i~~  195 (206)
                      .+++.|.|+||+|||||.+.|..
T Consensus        29 ~~~~~itGpNg~GKStlLk~i~~   51 (213)
T cd03281          29 PSIMVITGPNSSGKSVYLKQVAL   51 (213)
T ss_pred             ceEEEEECCCCCChHHHHHHHHH
Confidence            36999999999999999999873

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit

Probab=96.69  E-value=0.0019  Score=52.12  Aligned_cols=26  Identities=38%  Similarity=0.528  Sum_probs=22.4

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945          173 EKVIGLYGMGGVGKTTLLKKLNNKFR  198 (206)
Q Consensus       173 ~~vI~IvG~~G~GKTTLa~~i~~~~~  198 (206)
                      ...+-++|++|+|||||++.+.+...
T Consensus        30 ~~~~ll~Gp~G~GKT~la~~ia~~~~   55 (305)
T TIGR00635        30 LDHLLLYGPPGLGKTTLAHIIANEMG   55 (305)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhC
Confidence            44678999999999999999988764

RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.

>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB

Probab=96.66  E-value=0.0032  Score=52.07  Aligned_cols=24  Identities=29%  Similarity=0.497  Sum_probs=21.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          174 KVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       174 ~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      ..|.|+|++|+||||+++.+.+..
T Consensus       135 glilI~GpTGSGKTTtL~aLl~~i  158 (358)
T TIGR02524       135 GIVFITGATGSGKSTLLAAIIREL  158 (358)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHH
Confidence            499999999999999999988765

Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=96.65  E-value=0.00073  Score=65.60  Aligned_cols=43  Identities=21%  Similarity=0.311  Sum_probs=36.3

Q ss_pred             HHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          159 SIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       159 ~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      ..++++...+..++  .|+|||..|+|||||++.+++-.++.+|.
T Consensus      1300 ~vL~~is~~I~~Ge--kiaIVGrTGsGKSTL~~lL~rl~~~~~G~ 1342 (1522)
T TIGR00957      1300 LVLRHINVTIHGGE--KVGIVGRTGAGKSSLTLGLFRINESAEGE 1342 (1522)
T ss_pred             ccccceeEEEcCCC--EEEEECCCCCCHHHHHHHHhcCccCCCCe
Confidence            46677777777788  99999999999999999999988776554

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]

Probab=96.63  E-value=0.0026  Score=52.88  Aligned_cols=45  Identities=20%  Similarity=0.280  Sum_probs=36.0

Q ss_pred             hHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          157 LDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       157 ~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      +...+..+......+.  .++|||+.|.||||+.+.+|...++++|.
T Consensus       275 ~r~iL~~isf~i~~g~--tvAiVg~SG~gKsTI~rllfRFyD~~sG~  319 (497)
T COG5265         275 RRPILNGISFTIPLGK--TVAIVGESGAGKSTILRLLFRFYDVNSGS  319 (497)
T ss_pred             cchhhcCccccccCcc--EEEEEeCCCCcHHHHHHHHHHHhCCcCce
Confidence            4455555655555566  99999999999999999999999887664

>PTZ00243 ABC transporter; Provisional

Probab=96.62  E-value=0.0008  Score=65.43  Aligned_cols=42  Identities=24%  Similarity=0.316  Sum_probs=36.1

Q ss_pred             HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      .++++...+..++  .|+|||..|+|||||++.+.+-.++.+|.
T Consensus      1325 vL~~vsf~I~~Ge--kVaIVGrTGSGKSTLl~lLlrl~~p~~G~ 1366 (1560)
T PTZ00243       1325 VLRGVSFRIAPRE--KVGIVGRTGSGKSTLLLTFMRMVEVCGGE 1366 (1560)
T ss_pred             eeecceEEECCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCcE
Confidence            5777777777888  99999999999999999999988776554

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=96.62  E-value=0.0014  Score=64.93  Aligned_cols=42  Identities=21%  Similarity=0.309  Sum_probs=34.0

Q ss_pred             HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      .++++...+.+++  +++|+|++|+|||||++.+.+...+.+|.
T Consensus       945 aL~~lsl~I~~Ge--i~aLLG~NGAGKSTLLkiLaGLl~PtsG~  986 (2272)
T TIGR01257       945 AVDRLNITFYENQ--ITAFLGHNGAGKTTTLSILTGLLPPTSGT  986 (2272)
T ss_pred             EEEeeEEEEcCCc--EEEEECCCCChHHHHHHHHhcCCCCCceE
Confidence            4555555566677  99999999999999999999988776554

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB

Probab=96.62  E-value=0.0047  Score=49.87  Aligned_cols=32  Identities=28%  Similarity=0.305  Sum_probs=24.3

Q ss_pred             HHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          164 VWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       164 l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      |...+..+.  -|.|.|+.|+|||||++.+.+..
T Consensus       125 L~~~v~~~~--~ilI~G~tGSGKTTll~al~~~i  156 (299)
T TIGR02782       125 LREAVLARK--NILVVGGTGSGKTTLANALLAEI  156 (299)
T ss_pred             HHHHHHcCC--eEEEECCCCCCHHHHHHHHHHHh
Confidence            333343343  67799999999999999998765

The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.

>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed

Probab=96.62  E-value=0.0043  Score=50.30  Aligned_cols=25  Identities=36%  Similarity=0.624  Sum_probs=22.2

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          173 EKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       173 ~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      -..|.++|+.|+||||+++.+....
T Consensus       133 ~~~I~l~G~~GsGKStvg~~La~~L  157 (309)
T PRK08154        133 RRRIALIGLRGAGKSTLGRMLAARL  157 (309)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHc
Confidence            4599999999999999999998664

>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=96.62  E-value=0.0012  Score=47.58  Aligned_cols=32  Identities=28%  Similarity=0.421  Sum_probs=26.1

Q ss_pred             HhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcC
Q 037945          166 RCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRD  199 (206)
Q Consensus       166 ~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~  199 (206)
                      ..+.+++  ++.+.|++|+|||||...+.+....
T Consensus        23 ~Tia~Ge--ivtlMGPSGcGKSTLls~~~G~La~   54 (213)
T COG4136          23 FTIAKGE--IVTLMGPSGCGKSTLLSWMIGALAG   54 (213)
T ss_pred             EEecCCc--EEEEECCCCccHHHHHHHHHhhccc
Confidence            3344577  9999999999999999998877643

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=96.60  E-value=0.0036  Score=49.03  Aligned_cols=24  Identities=29%  Similarity=0.584  Sum_probs=21.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhhc
Q 037945          175 VIGLYGMGGVGKTTLLKKLNNKFR  198 (206)
Q Consensus       175 vI~IvG~~G~GKTTLa~~i~~~~~  198 (206)
                      .+.++|++|+|||||++.+.+...
T Consensus       122 ~~~~~G~sgvGKStLiN~L~~~~~  145 (245)
T TIGR00157       122 ISVFAGQSGVGKSSLINALDPSVK  145 (245)
T ss_pred             EEEEECCCCCCHHHHHHHHhhhhh
Confidence            889999999999999999988653

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>PF13245 AAA_19: Part of AAA domain

Probab=96.60  E-value=0.0028  Score=40.27  Aligned_cols=23  Identities=30%  Similarity=0.427  Sum_probs=17.3

Q ss_pred             eEEEEEcCCCCcHH-HHHHHHHhh
Q 037945          174 KVIGLYGMGGVGKT-TLLKKLNNK  196 (206)
Q Consensus       174 ~vI~IvG~~G~GKT-TLa~~i~~~  196 (206)
                      ++..|.|++|+||| |+++.+..-
T Consensus        11 ~~~vv~g~pGtGKT~~~~~~i~~l   34 (76)
T PF13245_consen   11 PLFVVQGPPGTGKTTTLAARIAEL   34 (76)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHH
Confidence            37888999999999 555555443

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=96.59  E-value=0.00062  Score=66.11  Aligned_cols=43  Identities=21%  Similarity=0.352  Sum_probs=34.7

Q ss_pred             HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCCC
Q 037945          160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHDF  204 (206)
Q Consensus       160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~F  204 (206)
                      .++++...+..++  .++|+|++|+|||||++.+.+...+.+|..
T Consensus       653 ~l~~isl~i~~G~--~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i  695 (1522)
T TIGR00957       653 TLNGITFSIPEGA--LVAVVGQVGCGKSSLLSALLAEMDKVEGHV  695 (1522)
T ss_pred             eeeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCccCCcEE
Confidence            4555655566677  999999999999999999999887765643

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function

Probab=96.59  E-value=0.0048  Score=47.95  Aligned_cols=49  Identities=22%  Similarity=0.458  Sum_probs=35.6

Q ss_pred             CCCccchHHHHHHHHHh----hhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcC
Q 037945          151 IGKTVGLDSIISEVWRC----IEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRD  199 (206)
Q Consensus       151 ~~~~~g~~~~~~~l~~~----L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~  199 (206)
                      ....+|.+...+.|..-    +....-.-+-+||..|+|||+|++.+.+....
T Consensus        26 l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~   78 (249)
T PF05673_consen   26 LDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYAD   78 (249)
T ss_pred             HHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhh
Confidence            35578877766655544    33334456788999999999999999887643

>PRK10646 ADP-binding protein; Provisional

Probab=96.59  E-value=0.0047  Score=44.68  Aligned_cols=35  Identities=31%  Similarity=0.416  Sum_probs=27.6

Q ss_pred             HHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945          162 SEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFR  198 (206)
Q Consensus       162 ~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~  198 (206)
                      +.|...|..++  +|.+.|.=|+|||||+|.+.....
T Consensus        19 ~~la~~l~~g~--vi~L~GdLGaGKTtf~rgl~~~Lg   53 (153)
T PRK10646         19 ARVAKACDGAT--VIYLYGDLGAGKTTFSRGFLQALG   53 (153)
T ss_pred             HHHHHhCCCCc--EEEEECCCCCCHHHHHHHHHHHcC
Confidence            34445555566  999999999999999999977653

>TIGR00750 lao LAO/AO transport system ATPase

Probab=96.59  E-value=0.0027  Score=51.23  Aligned_cols=27  Identities=37%  Similarity=0.626  Sum_probs=23.0

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          171 HNEKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       171 ~~~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      +...+|+|.|++|+|||||+..+....
T Consensus        32 ~~~~~i~i~G~~G~GKttl~~~l~~~~   58 (300)
T TIGR00750        32 GNAHRVGITGTPGAGKSTLLEALGMEL   58 (300)
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHHH
Confidence            345699999999999999999987654

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional

Probab=96.59  E-value=0.0025  Score=52.53  Aligned_cols=27  Identities=22%  Similarity=0.373  Sum_probs=24.2

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945          172 NEKVIGLYGMGGVGKTTLLKKLNNKFR  198 (206)
Q Consensus       172 ~~~vI~IvG~~G~GKTTLa~~i~~~~~  198 (206)
                      -...++|||++|+|||.+++.|++...
T Consensus       147 ~PlgllL~GPPGcGKTllAraiA~elg  173 (413)
T PLN00020        147 VPLILGIWGGKGQGKSFQCELVFKKMG  173 (413)
T ss_pred             CCeEEEeeCCCCCCHHHHHHHHHHHcC
Confidence            456999999999999999999999864

>PRK06835 DNA replication protein DnaC; Validated

Probab=96.58  E-value=0.21  Score=40.91  Aligned_cols=24  Identities=29%  Similarity=0.468  Sum_probs=21.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          174 KVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       174 ~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      .-+-++|+.|+|||+|+..|.+..
T Consensus       184 ~~Lll~G~~GtGKThLa~aIa~~l  207 (329)
T PRK06835        184 ENLLFYGNTGTGKTFLSNCIAKEL  207 (329)
T ss_pred             CcEEEECCCCCcHHHHHHHHHHHH
Confidence            579999999999999999998865

>TIGR03689 pup_AAA proteasome ATPase

Probab=96.58  E-value=0.0041  Score=53.64  Aligned_cols=46  Identities=35%  Similarity=0.469  Sum_probs=35.0

Q ss_pred             CCccchHHHHHHHHHhhhc-------------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          152 GKTVGLDSIISEVWRCIED-------------HNEKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~-------------~~~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      ..+.|.+..++.|...+.-             ...+-|-++|++|+|||++++.+++..
T Consensus       182 ~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL  240 (512)
T TIGR03689       182 ADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSL  240 (512)
T ss_pred             HHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhh
Confidence            3466788877777766531             123468899999999999999999875

In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=96.56  E-value=0.0012  Score=53.08  Aligned_cols=34  Identities=29%  Similarity=0.577  Sum_probs=28.4

Q ss_pred             hhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          168 IEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       168 L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      +.+++  +..|.|.+|+|||||++++..-.+|++|.
T Consensus        51 v~~Ge--IfViMGLSGSGKSTLvR~~NrLiept~G~   84 (386)
T COG4175          51 VEEGE--IFVIMGLSGSGKSTLVRLLNRLIEPTRGE   84 (386)
T ss_pred             ecCCe--EEEEEecCCCCHHHHHHHHhccCCCCCce
Confidence            34466  88999999999999999999888776554

>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]

Probab=96.56  E-value=0.004  Score=49.58  Aligned_cols=36  Identities=36%  Similarity=0.645  Sum_probs=27.8

Q ss_pred             HHHHHhhhc--CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          162 SEVWRCIED--HNEKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       162 ~~l~~~L~~--~~~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      .+++..+..  ++-.+|+|-|.+|+|||||.-.+-...
T Consensus        38 ~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l   75 (323)
T COG1703          38 RELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGREL   75 (323)
T ss_pred             HHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHH
Confidence            345555554  677799999999999999998776554

>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX

Probab=96.54  E-value=0.0052  Score=49.25  Aligned_cols=23  Identities=26%  Similarity=0.429  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhh
Q 037945          175 VIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       175 vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      -+-++|++|+||||+|+.+....
T Consensus        60 ~vll~G~pGTGKT~lA~~ia~~l   82 (284)
T TIGR02880        60 HMSFTGNPGTGKTTVALRMAQIL   82 (284)
T ss_pred             eEEEEcCCCCCHHHHHHHHHHHH
Confidence            57799999999999997765543

Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.

>PRK06002 fliI flagellum-specific ATP synthase; Validated

Probab=96.54  E-value=0.00092  Score=56.49  Aligned_cols=31  Identities=32%  Similarity=0.396  Sum_probs=26.0

Q ss_pred             hhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCC
Q 037945          168 IEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDT  200 (206)
Q Consensus       168 L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~  200 (206)
                      +..++  +++|+|++|+|||||++.|.....+.
T Consensus       162 I~~Gq--ri~I~G~SGsGKTTLL~~Ia~l~~pd  192 (450)
T PRK06002        162 LCAGQ--RIGIFAGSGVGKSTLLAMLARADAFD  192 (450)
T ss_pred             ecCCc--EEEEECCCCCCHHHHHHHHhCCCCCC
Confidence            44567  99999999999999999998766544

>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein

Probab=96.53  E-value=0.00063  Score=60.29  Aligned_cols=38  Identities=24%  Similarity=0.405  Sum_probs=30.0

Q ss_pred             HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcC
Q 037945          160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRD  199 (206)
Q Consensus       160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~  199 (206)
                      .++++...+..++  +++|+|++|+|||||.+.+.+...+
T Consensus        40 iL~~vs~~i~~Ge--~~aI~G~sGsGKSTLL~~L~g~~~~   77 (617)
T TIGR00955        40 LLKNVSGVAKPGE--LLAVMGSSGAGKTTLMNALAFRSPK   77 (617)
T ss_pred             cccCCEEEEeCCe--EEEEECCCCCCHHHHHHHHhCCCCC
Confidence            3444555555677  9999999999999999999987543

>TIGR00368 Mg chelatase-related protein

Probab=96.53  E-value=0.0033  Score=54.24  Aligned_cols=46  Identities=20%  Similarity=0.234  Sum_probs=36.5

Q ss_pred             CCCccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945          151 IGKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFR  198 (206)
Q Consensus       151 ~~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~  198 (206)
                      ...++|....+..+...+..+.  .+.++|++|+|||||++.+.+-..
T Consensus       191 ~~dv~Gq~~~~~al~~aa~~g~--~vlliG~pGsGKTtlar~l~~llp  236 (499)
T TIGR00368       191 LKDIKGQQHAKRALEIAAAGGH--NLLLFGPPGSGKTMLASRLQGILP  236 (499)
T ss_pred             HHHhcCcHHHHhhhhhhccCCC--EEEEEecCCCCHHHHHHHHhcccC
Confidence            3567888777777766666566  899999999999999999987543

The N-terminal end matches very strongly a pfam Mg_chelatase domain.

>PLN03140 ABC transporter G family member; Provisional

Probab=96.52  E-value=0.00077  Score=65.03  Aligned_cols=30  Identities=37%  Similarity=0.399  Sum_probs=25.5

Q ss_pred             hhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcC
Q 037945          168 IEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRD  199 (206)
Q Consensus       168 L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~  199 (206)
                      +..++  +++|+|++|+|||||++.+.+...+
T Consensus       188 i~~Ge--~~~llGpnGSGKSTLLk~LaG~l~~  217 (1470)
T PLN03140        188 IKPSR--MTLLLGPPSSGKTTLLLALAGKLDP  217 (1470)
T ss_pred             EeCCe--EEEEEcCCCCCHHHHHHHHhCCCCC
Confidence            33455  9999999999999999999987654

>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH

Probab=96.51  E-value=0.0053  Score=53.05  Aligned_cols=46  Identities=26%  Similarity=0.340  Sum_probs=31.7

Q ss_pred             CCccchHHHHHHHHHhh---hc---------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          152 GKTVGLDSIISEVWRCI---ED---------HNEKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       152 ~~~~g~~~~~~~l~~~L---~~---------~~~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      ..+.|.+...+.+...+   ..         .-.+-+-++|++|+|||+|++.+.+..
T Consensus        55 ~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~  112 (495)
T TIGR01241        55 KDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA  112 (495)
T ss_pred             HHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc
Confidence            34678766555444333   22         113357899999999999999998865

HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.

>PF03215 Rad17: Rad17 cell cycle checkpoint protein

Probab=96.51  E-value=0.0045  Score=53.58  Aligned_cols=40  Identities=30%  Similarity=0.478  Sum_probs=30.7

Q ss_pred             HHHHHHHHHhhhc-----CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          158 DSIISEVWRCIED-----HNEKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       158 ~~~~~~l~~~L~~-----~~~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      ..-++++..||.+     ...+++-+.||+|+||||.++.+....
T Consensus        25 kkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~el   69 (519)
T PF03215_consen   25 KKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKEL   69 (519)
T ss_pred             HHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHh
Confidence            3455667777764     224588999999999999999998875

>PRK12724 flagellar biosynthesis regulator FlhF; Provisional

Probab=96.50  E-value=0.0028  Score=53.19  Aligned_cols=25  Identities=44%  Similarity=0.594  Sum_probs=21.6

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          173 EKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       173 ~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      ..+|.++|++|+||||++..+....
T Consensus       223 ~~vi~lvGptGvGKTTtaaKLA~~~  247 (432)
T PRK12724        223 RKVVFFVGPTGSGKTTSIAKLAAKY  247 (432)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHH
Confidence            4589999999999999999987643

>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional

Probab=96.50  E-value=0.0025  Score=54.95  Aligned_cols=40  Identities=25%  Similarity=0.491  Sum_probs=28.4

Q ss_pred             cchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          155 VGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       155 ~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      +|.-..++++.-.+   ...+|+|.|++|+||||+++.+....
T Consensus       269 ~g~~RLIDN~~~~~---~~~ii~i~G~sgsGKst~a~~la~~l  308 (512)
T PRK13477        269 CGSTRLIDNVFLMK---RQPIIAIDGPAGAGKSTVTRAVAKKL  308 (512)
T ss_pred             eCCeEEEeeeEecc---CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence            35433444443322   33599999999999999999998765

>PHA02244 ATPase-like protein

Probab=96.50  E-value=0.0061  Score=50.32  Aligned_cols=38  Identities=13%  Similarity=0.253  Sum_probs=29.1

Q ss_pred             HHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          158 DSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       158 ~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      ......+..++..+.  -|-++|++|+|||+||+.+....
T Consensus       106 ~~~~~ri~r~l~~~~--PVLL~GppGtGKTtLA~aLA~~l  143 (383)
T PHA02244        106 HYETADIAKIVNANI--PVFLKGGAGSGKNHIAEQIAEAL  143 (383)
T ss_pred             HHHHHHHHHHHhcCC--CEEEECCCCCCHHHHHHHHHHHh
Confidence            345556666666555  57889999999999999998764

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=96.49  E-value=0.0011  Score=64.05  Aligned_cols=52  Identities=15%  Similarity=0.148  Sum_probs=39.0

Q ss_pred             ccccCCCCccc-h--HHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcC
Q 037945          146 VEERPIGKTVG-L--DSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRD  199 (206)
Q Consensus       146 ~~~~~~~~~~g-~--~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~  199 (206)
                      +...+++..|. +  ...++++...+..++  .++|||++|+|||||++++.+..+|
T Consensus      1166 I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~--~vAIVG~SGsGKSTl~~LL~r~ydp 1220 (1466)
T PTZ00265       1166 IEIMDVNFRYISRPNVPIYKDLTFSCDSKK--TTAIVGETGSGKSTVMSLLMRFYDL 1220 (1466)
T ss_pred             EEEEEEEEECCCCCCCccccCeeEEEcCCC--EEEEECCCCCCHHHHHHHHHHhCCC
Confidence            33344444553 2  235677777777788  9999999999999999999998776

>PRK07764 DNA polymerase III subunits gamma and tau; Validated

Probab=96.49  E-value=0.004  Score=56.77  Aligned_cols=46  Identities=15%  Similarity=0.280  Sum_probs=39.4

Q ss_pred             CCccchHHHHHHHHHhhhcCCCe-EEEEEcCCCCcHHHHHHHHHhhh
Q 037945          152 GKTVGLDSIISEVWRCIEDHNEK-VIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~~~~~-vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      ..++|.+..++.|...+..+.+. .+-++|+.|+||||+|+.+....
T Consensus        15 ~eiiGqe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L   61 (824)
T PRK07764         15 AEVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSL   61 (824)
T ss_pred             HHhcCcHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence            45889999999999999887654 68899999999999999987665

>TIGR01650 PD_CobS cobaltochelatase, CobS subunit

Probab=96.48  E-value=0.01  Score=48.28  Aligned_cols=36  Identities=14%  Similarity=0.288  Sum_probs=28.8

Q ss_pred             HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      ....+...+..+.  -|-+.|+.|+|||||++.+....
T Consensus        53 ~~~~vl~~l~~~~--~ilL~G~pGtGKTtla~~lA~~l   88 (327)
T TIGR01650        53 TTKAICAGFAYDR--RVMVQGYHGTGKSTHIEQIAARL   88 (327)
T ss_pred             HHHHHHHHHhcCC--cEEEEeCCCChHHHHHHHHHHHH
Confidence            4455666666555  79999999999999999997754

This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.

>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP)

Probab=96.48  E-value=0.0056  Score=48.52  Aligned_cols=25  Identities=32%  Similarity=0.348  Sum_probs=21.3

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          173 EKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       173 ~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      -..|.|.|+.|+||||+++.+.+..
T Consensus        80 ~GlilisG~tGSGKTT~l~all~~i  104 (264)
T cd01129          80 HGIILVTGPTGSGKTTTLYSALSEL  104 (264)
T ss_pred             CCEEEEECCCCCcHHHHHHHHHhhh
Confidence            3489999999999999999876554

It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.

>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type

Probab=96.48  E-value=0.003  Score=51.56  Aligned_cols=24  Identities=38%  Similarity=0.620  Sum_probs=21.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          174 KVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       174 ~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      ..|.|+|.+|+|||||++.+.+..
T Consensus       163 ~~~~~~G~~~~gkstl~~~l~~~~  186 (325)
T TIGR01526       163 KTVAILGGESTGKSTLVNKLAAVF  186 (325)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHhh
Confidence            389999999999999999998764

E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.

>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional

Probab=96.48  E-value=0.0052  Score=51.76  Aligned_cols=46  Identities=22%  Similarity=0.231  Sum_probs=34.5

Q ss_pred             CCccchHHHHHHHHHhhhc-------C---------CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          152 GKTVGLDSIISEVWRCIED-------H---------NEKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~-------~---------~~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      ..++|.+..++.+...+..       .         ...-|-++|++|+||||||+.+....
T Consensus        71 ~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l  132 (412)
T PRK05342         71 QYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARIL  132 (412)
T ss_pred             hHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHh
Confidence            4588998888877655421       0         12468899999999999999998654

>PRK14953 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.47  E-value=0.0058  Score=52.61  Aligned_cols=46  Identities=17%  Similarity=0.276  Sum_probs=38.3

Q ss_pred             CCccchHHHHHHHHHhhhcCCCe-EEEEEcCCCCcHHHHHHHHHhhh
Q 037945          152 GKTVGLDSIISEVWRCIEDHNEK-VIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~~~~~-vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      ..++|.+.....+...+..+.+. .+-++|+.|+||||+|+.+....
T Consensus        16 ~diiGq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L   62 (486)
T PRK14953         16 KEVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVL   62 (486)
T ss_pred             HHccChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            45889999999999999886543 56789999999999999987654

>PRK10865 protein disaggregation chaperone; Provisional

Probab=96.47  E-value=0.0063  Score=56.00  Aligned_cols=46  Identities=28%  Similarity=0.362  Sum_probs=36.2

Q ss_pred             CCccchHHHHHHHHHhhhc--------C-CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          152 GKTVGLDSIISEVWRCIED--------H-NEKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~--------~-~~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      ..++|.+..++.+...+..        + ....+.++|++|+||||||+.+.+..
T Consensus       568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l  622 (857)
T PRK10865        568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFM  622 (857)
T ss_pred             CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence            3477988888888877763        1 12478899999999999999998754

>PRK04220 2-phosphoglycerate kinase; Provisional

Probab=96.47  E-value=0.0053  Score=49.28  Aligned_cols=34  Identities=29%  Similarity=0.585  Sum_probs=26.6

Q ss_pred             HHHhhhc-CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          164 VWRCIED-HNEKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       164 l~~~L~~-~~~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      ++..+.. ...-+|.|.|++|+||||+|+.+....
T Consensus        82 ~~~~i~~~~~p~iIlI~G~sgsGKStlA~~La~~l  116 (301)
T PRK04220         82 LWRRIRKSKEPIIILIGGASGVGTSTIAFELASRL  116 (301)
T ss_pred             HHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence            3444444 345689999999999999999998875

>PRK14965 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.47  E-value=0.0058  Score=53.79  Aligned_cols=46  Identities=20%  Similarity=0.306  Sum_probs=39.3

Q ss_pred             CCccchHHHHHHHHHhhhcCCC-eEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          152 GKTVGLDSIISEVWRCIEDHNE-KVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~~~~-~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      ..++|.+.....|...+..+.+ +.+-++|+.|+||||+|+.+.+..
T Consensus        16 ~~iiGq~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l   62 (576)
T PRK14965         16 SDLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKAL   62 (576)
T ss_pred             HHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence            4589999899999999988765 467899999999999999887664

>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=96.47  E-value=0.0028  Score=53.58  Aligned_cols=24  Identities=50%  Similarity=0.742  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          174 KVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       174 ~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      .+|.++|++|+||||++..+....
T Consensus       222 ~~i~~vGptGvGKTTt~~kLA~~~  245 (424)
T PRK05703        222 GVVALVGPTGVGKTTTLAKLAARY  245 (424)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHH
Confidence            399999999999999888876544

>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]

Probab=96.46  E-value=0.17  Score=45.84  Aligned_cols=46  Identities=28%  Similarity=0.379  Sum_probs=36.7

Q ss_pred             CCccchHHHHHHHHHhhhc---------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          152 GKTVGLDSIISEVWRCIED---------HNEKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~---------~~~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      ..++|.+..+..+...+..         ..+.+.-.+||.|||||-||+.+....
T Consensus       491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~L  545 (786)
T COG0542         491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEAL  545 (786)
T ss_pred             cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHh
Confidence            3488999888888888763         234578889999999999999876654

>COG0714 MoxR-like ATPases [General function prediction only]

Probab=96.46  E-value=0.0052  Score=50.26  Aligned_cols=43  Identities=28%  Similarity=0.320  Sum_probs=36.5

Q ss_pred             ccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945          154 TVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFR  198 (206)
Q Consensus       154 ~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~  198 (206)
                      ++|.+.....+...+..+.  -+-+.|++|+|||+||+.+.....
T Consensus        26 ~~g~~~~~~~~l~a~~~~~--~vll~G~PG~gKT~la~~lA~~l~   68 (329)
T COG0714          26 VVGDEEVIELALLALLAGG--HVLLEGPPGVGKTLLARALARALG   68 (329)
T ss_pred             eeccHHHHHHHHHHHHcCC--CEEEECCCCccHHHHHHHHHHHhC
Confidence            6788888888777777777  799999999999999999987653

>PRK06647 DNA polymerase III subunits gamma and tau; Validated

Probab=96.46  E-value=0.0051  Score=53.89  Aligned_cols=46  Identities=22%  Similarity=0.282  Sum_probs=39.5

Q ss_pred             CCccchHHHHHHHHHhhhcCCCe-EEEEEcCCCCcHHHHHHHHHhhh
Q 037945          152 GKTVGLDSIISEVWRCIEDHNEK-VIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~~~~~-vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      ..++|.+..+..|...+..+.+. .+-++|+.|+||||+|+.+....
T Consensus        16 ~diiGqe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L   62 (563)
T PRK06647         16 NSLEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCL   62 (563)
T ss_pred             HHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence            45899999999999999887644 57899999999999999987764

>PTZ00243 ABC transporter; Provisional

Probab=96.46  E-value=0.0021  Score=62.55  Aligned_cols=38  Identities=29%  Similarity=0.385  Sum_probs=30.2

Q ss_pred             HHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          164 VWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       164 l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      +...+..++  +++|+|++|+|||||++.|.+...+.+|.
T Consensus       679 isl~i~~G~--~~~IiG~nGsGKSTLL~~i~G~~~~~~G~  716 (1560)
T PTZ00243        679 VSVSVPRGK--LTVVLGATGSGKSTLLQSLLSQFEISEGR  716 (1560)
T ss_pred             eEEEECCCC--EEEEECCCCCcHHHHHHHHhcCCCCCCcE
Confidence            333344466  99999999999999999999987776564

>PRK06851 hypothetical protein; Provisional

Probab=96.46  E-value=0.12  Score=42.96  Aligned_cols=41  Identities=24%  Similarity=0.327  Sum_probs=30.1

Q ss_pred             cchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcC
Q 037945          155 VGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRD  199 (206)
Q Consensus       155 ~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~  199 (206)
                      .|.-..++.+.    .+--+++.|-|++|+|||||++.++.....
T Consensus       200 ~G~~s~~~~l~----~~~~~~~~i~G~pG~GKstl~~~i~~~a~~  240 (367)
T PRK06851        200 KGAVDFVPSLT----EGVKNRYFLKGRPGTGKSTMLKKIAKAAEE  240 (367)
T ss_pred             CcHHhhHHhHh----cccceEEEEeCCCCCcHHHHHHHHHHHHHh
Confidence            35444444443    344568999999999999999999987643

>PLN03232 ABC transporter C family member; Provisional

Probab=96.46  E-value=0.0011  Score=64.35  Aligned_cols=41  Identities=22%  Similarity=0.352  Sum_probs=33.6

Q ss_pred             HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCC
Q 037945          160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEH  202 (206)
Q Consensus       160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~  202 (206)
                      .++++...+..++  .++|+|+.|+|||||++.+.+...+.+|
T Consensus       632 vL~~inl~i~~Ge--~vaIvG~sGSGKSTLl~lLlG~~~~~~G  672 (1495)
T PLN03232        632 TLSDINLEIPVGS--LVAIVGGTGEGKTSLISAMLGELSHAET  672 (1495)
T ss_pred             eeeeeEEEEcCCC--EEEEECCCCCcHHHHHHHHhCCCcccCC
Confidence            4555656666677  9999999999999999999998877644

>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=96.45  E-value=0.0065  Score=52.85  Aligned_cols=48  Identities=25%  Similarity=0.336  Sum_probs=35.7

Q ss_pred             CCccchHHHHHHHHHhhhc------------CCCeEEEEEcCCCCcHHHHHHHHHhhhcC
Q 037945          152 GKTVGLDSIISEVWRCIED------------HNEKVIGLYGMGGVGKTTLLKKLNNKFRD  199 (206)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~------------~~~~vI~IvG~~G~GKTTLa~~i~~~~~~  199 (206)
                      ..+-|.+..+.++...+..            ...+=+-++||+|+|||.||+.|.+...+
T Consensus       190 ~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~v  249 (802)
T KOG0733|consen  190 SDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGV  249 (802)
T ss_pred             hhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCC
Confidence            3466777777766666542            12345779999999999999999998754

>PLN03130 ABC transporter C family member; Provisional

Probab=96.45  E-value=0.0014  Score=63.89  Aligned_cols=40  Identities=18%  Similarity=0.307  Sum_probs=33.8

Q ss_pred             HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCC
Q 037945          160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTE  201 (206)
Q Consensus       160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~  201 (206)
                      .++++...+..++  .++|+|+.|+|||||++.+.+...+.+
T Consensus       632 vL~~inl~i~~Ge--~vaIvG~sGSGKSTLl~lLlG~~~~~~  671 (1622)
T PLN03130        632 TLSNINLDVPVGS--LVAIVGSTGEGKTSLISAMLGELPPRS  671 (1622)
T ss_pred             eeeceeEEecCCC--EEEEECCCCCCHHHHHHHHHHhhccCC
Confidence            4556666666778  999999999999999999999988765

>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional

Probab=96.44  E-value=0.0058  Score=50.77  Aligned_cols=43  Identities=26%  Similarity=0.381  Sum_probs=31.5

Q ss_pred             chHHHHHHHHHhhhc---CCCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945          156 GLDSIISEVWRCIED---HNEKVIGLYGMGGVGKTTLLKKLNNKFR  198 (206)
Q Consensus       156 g~~~~~~~l~~~L~~---~~~~vI~IvG~~G~GKTTLa~~i~~~~~  198 (206)
                      ....+++.+......   ...++|+|+|..|+|||||+..+.....
T Consensus       185 NTpeDl~~l~~~~~~~~~~~~~~~~~~g~~~~GKtt~~~~l~~~l~  230 (366)
T PRK14489        185 NTPEDLEQLRAIPDGTTTGAPPLLGVVGYSGTGKTTLLEKLIPELI  230 (366)
T ss_pred             CCHHHHHHHhhhhhcccCCCccEEEEecCCCCCHHHHHHHHHHHHH
Confidence            345566666554321   2466999999999999999999987664

>PRK06526 transposase; Provisional

Probab=96.44  E-value=0.0034  Score=49.42  Aligned_cols=23  Identities=30%  Similarity=0.326  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhh
Q 037945          175 VIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       175 vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      -+-++|++|+|||+|+..|....
T Consensus       100 nlll~Gp~GtGKThLa~al~~~a  122 (254)
T PRK06526        100 NVVFLGPPGTGKTHLAIGLGIRA  122 (254)
T ss_pred             eEEEEeCCCCchHHHHHHHHHHH
Confidence            68999999999999999887653

>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts)

Probab=96.44  E-value=0.0077  Score=47.29  Aligned_cols=27  Identities=22%  Similarity=0.329  Sum_probs=23.5

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945          172 NEKVIGLYGMGGVGKTTLLKKLNNKFR  198 (206)
Q Consensus       172 ~~~vI~IvG~~G~GKTTLa~~i~~~~~  198 (206)
                      ....|.++|..|+|||||++.|.+...
T Consensus        30 ~~~~IllvG~tGvGKSSliNaLlg~~~   56 (249)
T cd01853          30 FSLTILVLGKTGVGKSSTINSIFGERK   56 (249)
T ss_pred             CCeEEEEECCCCCcHHHHHHHHhCCCC
Confidence            345899999999999999999998653

This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.

>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]

Probab=96.43  E-value=0.0032  Score=52.17  Aligned_cols=38  Identities=24%  Similarity=0.323  Sum_probs=31.2

Q ss_pred             HHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          164 VWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       164 l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      +.-.+..++  ++=|+|-||+||||+++++-+-.+|++|.
T Consensus       342 iNl~ikrGe--lvFliG~NGsGKST~~~LLtGL~~PqsG~  379 (546)
T COG4615         342 INLTIKRGE--LVFLIGGNGSGKSTLAMLLTGLYQPQSGE  379 (546)
T ss_pred             eeeEEecCc--EEEEECCCCCcHHHHHHHHhcccCCCCCc
Confidence            344455677  89999999999999999999988887664

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=96.41  E-value=0.0014  Score=56.46  Aligned_cols=39  Identities=26%  Similarity=0.406  Sum_probs=32.9

Q ss_pred             HHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcC
Q 037945          159 SIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRD  199 (206)
Q Consensus       159 ~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~  199 (206)
                      ..+++++..+..++  +++|||.+|+||||++..|.+-...
T Consensus        23 ~~v~~vsf~v~~GE--~lgIvGESGsGKSt~a~~i~gll~~   61 (539)
T COG1123          23 PAVRDVSFEVEPGE--ILGIVGESGSGKSTLALALMGLLPE   61 (539)
T ss_pred             eeeecceEEecCCc--EEEEEcCCCCCHHHHHHHHhccCCC
Confidence            35566777778889  9999999999999999999987643

>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H

Probab=96.40  E-value=0.005  Score=43.70  Aligned_cols=49  Identities=20%  Similarity=0.314  Sum_probs=30.1

Q ss_pred             chHHHHHHHHHhhhc--CCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCCC
Q 037945          156 GLDSIISEVWRCIED--HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHDF  204 (206)
Q Consensus       156 g~~~~~~~l~~~L~~--~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~F  204 (206)
                      |......++...+..  ....-|-|.|..|+||+++|+.|+.......+.|
T Consensus         2 G~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~   52 (138)
T PF14532_consen    2 GKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYSGRANGPF   52 (138)
T ss_dssp             -SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-C
T ss_pred             CCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCe
Confidence            333344444444443  2233789999999999999999998765432333

>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=96.39  E-value=0.0031  Score=56.64  Aligned_cols=24  Identities=46%  Similarity=0.582  Sum_probs=21.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          174 KVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       174 ~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      .+|+++|++|+||||++.++....
T Consensus       186 ~Vi~lVGpnGvGKTTTiaKLA~~~  209 (767)
T PRK14723        186 GVLALVGPTGVGKTTTTAKLAARC  209 (767)
T ss_pred             eEEEEECCCCCcHHHHHHHHHhhH
Confidence            499999999999999999988765

>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]

Probab=96.39  E-value=5.5e-05  Score=56.68  Aligned_cols=49  Identities=22%  Similarity=0.350  Sum_probs=37.3

Q ss_pred             CCccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCC
Q 037945          152 GKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEH  202 (206)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~  202 (206)
                      .+.|+....+..++..+..++  ++++.||||.||||..-+|.+-..+++|
T Consensus        11 ~K~y~kr~Vv~~Vsl~v~~GE--iVGLLGPNGAGKTT~Fymi~Glv~~d~G   59 (243)
T COG1137          11 AKSYKKRKVVNDVSLEVNSGE--IVGLLGPNGAGKTTTFYMIVGLVRPDSG   59 (243)
T ss_pred             hHhhCCeeeeeeeeEEEcCCc--EEEEECCCCCCceeEEEEEEEEEecCCc
Confidence            445666656666666677788  9999999999999988777776666544

>TIGR01425 SRP54_euk signal recognition particle protein SRP54

Probab=96.37  E-value=0.0044  Score=52.26  Aligned_cols=26  Identities=38%  Similarity=0.548  Sum_probs=22.3

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          172 NEKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       172 ~~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      ...+|.++|++|+||||++..+....
T Consensus        99 ~~~vi~lvG~~GvGKTTtaaKLA~~l  124 (429)
T TIGR01425        99 KQNVIMFVGLQGSGKTTTCTKLAYYY  124 (429)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            35699999999999999999887654

This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.

>PRK12288 GTPase RsgA; Reviewed

Probab=96.37  E-value=0.0038  Score=51.39  Aligned_cols=24  Identities=29%  Similarity=0.461  Sum_probs=21.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhhc
Q 037945          175 VIGLYGMGGVGKTTLLKKLNNKFR  198 (206)
Q Consensus       175 vI~IvG~~G~GKTTLa~~i~~~~~  198 (206)
                      ++.++|.+|+|||||++.+.++..
T Consensus       207 i~~~vG~sgVGKSTLiN~Ll~~~~  230 (347)
T PRK12288        207 ISIFVGQSGVGKSSLINALLPEAE  230 (347)
T ss_pred             CEEEECCCCCCHHHHHHHhccccc
Confidence            688999999999999999987643

>PRK08451 DNA polymerase III subunits gamma and tau; Validated

Probab=96.37  E-value=0.007  Score=52.53  Aligned_cols=46  Identities=15%  Similarity=0.298  Sum_probs=39.0

Q ss_pred             CCccchHHHHHHHHHhhhcCCCe-EEEEEcCCCCcHHHHHHHHHhhh
Q 037945          152 GKTVGLDSIISEVWRCIEDHNEK-VIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~~~~~-vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      ..++|.+.....+...+..+.+. .+-++|+.|+||||+|+.+....
T Consensus        14 deiiGqe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L   60 (535)
T PRK08451         14 DELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARAL   60 (535)
T ss_pred             HHccCcHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHh
Confidence            45899998999999999887754 66899999999999999877654

>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX)

Probab=96.36  E-value=0.008  Score=50.55  Aligned_cols=47  Identities=21%  Similarity=0.176  Sum_probs=35.2

Q ss_pred             CCCccchHHHHHHHHHhhh-------c-------C----CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          151 IGKTVGLDSIISEVWRCIE-------D-------H----NEKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       151 ~~~~~g~~~~~~~l~~~L~-------~-------~----~~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      ...++|.+..++.+...+.       .       +    .-..|.++|++|+|||+||+.+....
T Consensus        76 ~~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l  140 (413)
T TIGR00382        76 DEYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARIL  140 (413)
T ss_pred             cceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhc
Confidence            3568899888887765551       1       0    02468999999999999999998654

A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.

>PRK12726 flagellar biosynthesis regulator FlhF; Provisional

Probab=96.35  E-value=0.0039  Score=51.68  Aligned_cols=25  Identities=48%  Similarity=0.690  Sum_probs=21.7

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          173 EKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       173 ~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      ..+|.++|++|+||||++..+....
T Consensus       206 ~~ii~lvGptGvGKTTt~akLA~~l  230 (407)
T PRK12726        206 HRIISLIGQTGVGKTTTLVKLGWQL  230 (407)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHH
Confidence            4599999999999999999887654

>PRK12289 GTPase RsgA; Reviewed

Probab=96.34  E-value=0.0046  Score=50.98  Aligned_cols=34  Identities=21%  Similarity=0.426  Sum_probs=25.5

Q ss_pred             HHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945          162 SEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFR  198 (206)
Q Consensus       162 ~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~  198 (206)
                      +.|...|.+ .  ++.|+|++|+|||||++.+.++..
T Consensus       164 ~eL~~~L~~-k--i~v~iG~SgVGKSSLIN~L~~~~~  197 (352)
T PRK12289        164 EALLEQLRN-K--ITVVAGPSGVGKSSLINRLIPDVE  197 (352)
T ss_pred             HHHhhhhcc-c--eEEEEeCCCCCHHHHHHHHcCccc
Confidence            344444432 3  689999999999999999987643

>PRK07471 DNA polymerase III subunit delta'; Validated

Probab=96.32  E-value=0.0096  Score=49.42  Aligned_cols=49  Identities=16%  Similarity=0.176  Sum_probs=39.9

Q ss_pred             cCCCCccchHHHHHHHHHhhhcCCCe-EEEEEcCCCCcHHHHHHHHHhhh
Q 037945          149 RPIGKTVGLDSIISEVWRCIEDHNEK-VIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       149 ~~~~~~~g~~~~~~~l~~~L~~~~~~-vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      .....++|.+.....+...+..+.+. -+-++|+.|+||+|||..+....
T Consensus        16 ~~~~~iiGq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~L   65 (365)
T PRK07471         16 RETTALFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFL   65 (365)
T ss_pred             CchhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence            33456899999999999999887644 68999999999999998765543

>PRK12723 flagellar biosynthesis regulator FlhF; Provisional

Probab=96.32  E-value=0.0041  Score=51.87  Aligned_cols=25  Identities=44%  Similarity=0.604  Sum_probs=21.8

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          173 EKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       173 ~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      ..+|.++|++|+||||.+..+....
T Consensus       174 ~~vi~lvGptGvGKTTT~aKLA~~~  198 (388)
T PRK12723        174 KRVFILVGPTGVGKTTTIAKLAAIY  198 (388)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHH
Confidence            4599999999999999999887654

>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily

Probab=96.31  E-value=0.0063  Score=55.13  Aligned_cols=46  Identities=30%  Similarity=0.354  Sum_probs=34.6

Q ss_pred             CCccchHHHHHHHHHhhhc-------------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          152 GKTVGLDSIISEVWRCIED-------------HNEKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~-------------~~~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      +.+.|.+..++.+...+.-             ...+-|.++|++|+|||||++.+.+..
T Consensus       178 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~  236 (733)
T TIGR01243       178 EDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEA  236 (733)
T ss_pred             HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHh
Confidence            3467888877777665531             123468899999999999999998865

This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.

>PRK05642 DNA replication initiation factor; Validated

Probab=96.31  E-value=0.004  Score=48.42  Aligned_cols=24  Identities=38%  Similarity=0.675  Sum_probs=21.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          174 KVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       174 ~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      ..+-|+|+.|+|||.|++.+++..
T Consensus        46 ~~l~l~G~~G~GKTHLl~a~~~~~   69 (234)
T PRK05642         46 SLIYLWGKDGVGRSHLLQAACLRF   69 (234)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHH
Confidence            478999999999999999998754

>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.31  E-value=0.002  Score=60.06  Aligned_cols=42  Identities=29%  Similarity=0.398  Sum_probs=34.6

Q ss_pred             HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      .++.+...+..++  .+++||++|+||||+++++....+|.+|.
T Consensus       368 Il~g~sl~i~~G~--~valVG~SGsGKST~i~LL~RfydP~~G~  409 (1228)
T KOG0055|consen  368 ILKGVSLKIPSGQ--TVALVGPSGSGKSTLIQLLARFYDPTSGE  409 (1228)
T ss_pred             hhCCeEEEeCCCC--EEEEECCCCCCHHHHHHHHHHhcCCCCce
Confidence            4555666666788  99999999999999999999988887553

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=96.31  E-value=0.0007  Score=65.16  Aligned_cols=37  Identities=32%  Similarity=0.497  Sum_probs=28.6

Q ss_pred             HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945          160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFR  198 (206)
Q Consensus       160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~  198 (206)
                      .++++...+..++  +++|+|++|+|||||++.+.+...
T Consensus       778 iL~~vs~~i~~Ge--~~aI~G~sGaGKSTLL~~Lag~~~  814 (1394)
T TIGR00956       778 ILNNVDGWVKPGT--LTALMGASGAGKTTLLNVLAERVT  814 (1394)
T ss_pred             eeeCCEEEEECCE--EEEEECCCCCCHHHHHHHHhCCCC
Confidence            3444444444566  999999999999999999998764

>PRK14948 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.30  E-value=0.0083  Score=53.19  Aligned_cols=46  Identities=20%  Similarity=0.272  Sum_probs=38.9

Q ss_pred             CCccchHHHHHHHHHhhhcCCC-eEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          152 GKTVGLDSIISEVWRCIEDHNE-KVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~~~~-~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      ..++|.+.....|..++..+.+ +-+-++|+.|+||||+|+.+....
T Consensus        16 ~~liGq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L   62 (620)
T PRK14948         16 DELVGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSL   62 (620)
T ss_pred             hhccChHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHh
Confidence            4588999899999998887653 467899999999999999987765

>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]

Probab=96.30  E-value=0.0091  Score=48.77  Aligned_cols=45  Identities=38%  Similarity=0.503  Sum_probs=34.7

Q ss_pred             ccchHHHHHHHHHhhh----c---------CCCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945          154 TVGLDSIISEVWRCIE----D---------HNEKVIGLYGMGGVGKTTLLKKLNNKFR  198 (206)
Q Consensus       154 ~~g~~~~~~~l~~~L~----~---------~~~~vI~IvG~~G~GKTTLa~~i~~~~~  198 (206)
                      +-|.+..+++|-+.+.    +         +..+=|-++|++|.|||-||+.|.|...
T Consensus       153 IGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~  210 (406)
T COG1222         153 IGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTD  210 (406)
T ss_pred             ccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccC
Confidence            4467777777776653    1         3455788999999999999999999764

>PRK00771 signal recognition particle protein Srp54; Provisional

Probab=96.28  E-value=0.0098  Score=50.45  Aligned_cols=26  Identities=42%  Similarity=0.579  Sum_probs=22.8

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945          173 EKVIGLYGMGGVGKTTLLKKLNNKFR  198 (206)
Q Consensus       173 ~~vI~IvG~~G~GKTTLa~~i~~~~~  198 (206)
                      ..+|.++|++|+||||++..+.....
T Consensus        95 p~vI~lvG~~GsGKTTtaakLA~~L~  120 (437)
T PRK00771         95 PQTIMLVGLQGSGKTTTAAKLARYFK  120 (437)
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHHHH
Confidence            56999999999999999999877654

>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]

Probab=96.27  E-value=0.0089  Score=49.68  Aligned_cols=36  Identities=33%  Similarity=0.469  Sum_probs=23.9

Q ss_pred             HHHHHHHHhhhcC----CCeEEEEEcCCCCcHHH-HHHHHH
Q 037945          159 SIISEVWRCIEDH----NEKVIGLYGMGGVGKTT-LLKKLN  194 (206)
Q Consensus       159 ~~~~~l~~~L~~~----~~~vI~IvG~~G~GKTT-La~~i~  194 (206)
                      .....+..++.++    +-++|++|||.|+|||| |||+..
T Consensus       185 ~~l~~~~~~~~~~~~~~~~~vi~LVGPTGVGKTTTlAKLAa  225 (407)
T COG1419         185 EKLRKLLLSLIENLIVEQKRVIALVGPTGVGKTTTLAKLAA  225 (407)
T ss_pred             HHHHHHHHhhccccccccCcEEEEECCCCCcHHHHHHHHHH
Confidence            3444455554443    35699999999999985 555543

>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase)

Probab=96.26  E-value=0.01  Score=47.91  Aligned_cols=40  Identities=20%  Similarity=0.365  Sum_probs=30.9

Q ss_pred             HHHHHHHHHhhhcC--CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          158 DSIISEVWRCIEDH--NEKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       158 ~~~~~~l~~~L~~~--~~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      ...+.+++..|.+.  ....|.|+|.+|+||||+++.|.+..
T Consensus        21 q~~l~~~l~~l~~~~~~~~rIllvGktGVGKSSliNsIlG~~   62 (313)
T TIGR00991        21 QTKLLELLGKLKEEDVSSLTILVMGKGGVGKSSTVNSIIGER   62 (313)
T ss_pred             HHHHHHHHHhcccccccceEEEEECCCCCCHHHHHHHHhCCC
Confidence            34555666666664  34589999999999999999999864

>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots

Probab=96.26  E-value=0.034  Score=40.01  Aligned_cols=108  Identities=8%  Similarity=0.100  Sum_probs=67.8

Q ss_pred             cchhhhhhhhhHhhhhhhhccccccchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHHH
Q 037945            5 INPIMDYLVCPLCGVISKHCGYVCGLTDSLNSLREAGRDLVNITRDVEARVDLAVEQRLRPTHEVNGWLESAKIMLREVD   84 (206)
Q Consensus         5 ~s~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~ae~~~~~~~~~~~~wl~~l~~~~~~~e   84 (206)
                      .+++++++...|...+.+...-...++.-++.|.+.++.|...+.+|+..       +...+..-+.-+.++.+...+++
T Consensus         7 ~gaalG~~~~eLlk~v~~~~~k~~~fk~~l~~L~sTl~~i~P~i~eI~~~-------~~eld~~~~ee~e~L~~~L~~g~   79 (147)
T PF05659_consen    7 GGAALGAVFGELLKAVIDASKKSLSFKSILKRLESTLESIIPIIKEIDKL-------NVELDRPRQEEIERLKELLEKGK   79 (147)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHH-------hhhcCCchhHHHHHHHHHHHHHH
Confidence            34455555554555555555556667777777777777777777776554       22233334777889999999999


Q ss_pred             HHHhhhhHhhhhhccCCccCCCCcccccchhHHHHHHHHHHHHHH
Q 037945           85 YILHRGDEEIQKTCLRKTCFPGSWSSRDKLGKEASEKIVAVEELI  129 (206)
Q Consensus        85 d~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  129 (206)
                      +++++|..-.       +   .++...++.+++|.+.-+.+....
T Consensus        80 ~LV~k~sk~~-------r---~n~~kk~~y~~Ki~~le~~l~~f~  114 (147)
T PF05659_consen   80 ELVEKCSKVR-------R---WNLYKKPRYARKIEELEESLRRFI  114 (147)
T ss_pred             HHHHHhcccc-------H---HHHHhhHhHHHHHHHHHHHHHHHh
Confidence            9998864311       1   133445667777776655555443

Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].

>PRK13851 type IV secretion system protein VirB11; Provisional

Probab=96.25  E-value=0.0062  Score=50.05  Aligned_cols=25  Identities=36%  Similarity=0.404  Sum_probs=22.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhhcC
Q 037945          175 VIGLYGMGGVGKTTLLKKLNNKFRD  199 (206)
Q Consensus       175 vI~IvG~~G~GKTTLa~~i~~~~~~  199 (206)
                      .|.|.|+.|+|||||++.+.+...+
T Consensus       164 nilI~G~tGSGKTTll~aLl~~i~~  188 (344)
T PRK13851        164 TMLLCGPTGSGKTTMSKTLISAIPP  188 (344)
T ss_pred             eEEEECCCCccHHHHHHHHHcccCC
Confidence            7999999999999999999887543

>PRK12377 putative replication protein; Provisional

Probab=96.22  E-value=0.0047  Score=48.42  Aligned_cols=26  Identities=23%  Similarity=0.314  Sum_probs=22.9

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945          173 EKVIGLYGMGGVGKTTLLKKLNNKFR  198 (206)
Q Consensus       173 ~~vI~IvG~~G~GKTTLa~~i~~~~~  198 (206)
                      ..-+.++|++|+|||+||..|.+...
T Consensus       101 ~~~l~l~G~~GtGKThLa~AIa~~l~  126 (248)
T PRK12377        101 CTNFVFSGKPGTGKNHLAAAIGNRLL  126 (248)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHH
Confidence            34789999999999999999998764

>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]

Probab=96.21  E-value=0.0063  Score=52.21  Aligned_cols=47  Identities=26%  Similarity=0.340  Sum_probs=36.5

Q ss_pred             CccchH---HHHHHHHHhhhcC--------C-CeEEEEEcCCCCcHHHHHHHHHhhhcC
Q 037945          153 KTVGLD---SIISEVWRCIEDH--------N-EKVIGLYGMGGVGKTTLLKKLNNKFRD  199 (206)
Q Consensus       153 ~~~g~~---~~~~~l~~~L~~~--------~-~~vI~IvG~~G~GKTTLa~~i~~~~~~  199 (206)
                      .+-|-+   .++++|+..|++.        . .+=|-++|++|.|||-||+.|.+...+
T Consensus       305 dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~V  363 (752)
T KOG0734|consen  305 DVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGV  363 (752)
T ss_pred             cccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCC
Confidence            345543   4788889999872        2 456889999999999999999987654

>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]

Probab=96.21  E-value=0.00042  Score=51.93  Aligned_cols=41  Identities=27%  Similarity=0.388  Sum_probs=32.1

Q ss_pred             HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCC
Q 037945          160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEH  202 (206)
Q Consensus       160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~  202 (206)
                      .+.+++..+..++  .=.|+|+||.||||+.-.|.+..++..|
T Consensus        20 Aln~ls~~v~~Ge--lr~lIGpNGAGKTT~mD~ItGKtrp~~G   60 (249)
T COG4674          20 ALNDLSFSVDPGE--LRVLIGPNGAGKTTLMDVITGKTRPQEG   60 (249)
T ss_pred             eeeeeEEEecCCe--EEEEECCCCCCceeeeeeecccCCCCcc
Confidence            4455556666677  5678999999999999999998877644

>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional

Probab=96.20  E-value=0.0097  Score=53.89  Aligned_cols=45  Identities=24%  Similarity=0.280  Sum_probs=35.5

Q ss_pred             CccchHHHHHHHHHhhhc---------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          153 KTVGLDSIISEVWRCIED---------HNEKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       153 ~~~g~~~~~~~l~~~L~~---------~~~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      .++|.+..++.|...+..         .....+-++|+.|+|||+||+.+....
T Consensus       459 ~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l  512 (758)
T PRK11034        459 LVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL  512 (758)
T ss_pred             eEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHh
Confidence            477888888888877762         123478899999999999999987765

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	206
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-09
1z6t_A	591	APAF-1, apoptotic protease activating factor 1; ca	8e-08
2a5y_B	549	CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis	5e-06
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	6e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 55.6 bits (133), Expect = 2e-09
 Identities = 29/195 (14%), Positives = 63/195 (32%), Gaps = 63/195 (32%)

Query: 42  RDLV-----NITRDVEARVDLAVEQRLRPTHEVNGWLESAKIMLREVDYILHRGDEEIQK 96
           +D++         + + +    V+   +             +   E+D+I+   D     
Sbjct: 19  KDILSVFEDAFVDNFDCK---DVQDMPKSI-----------LSKEEIDHIIMSKDAVSGT 64

Query: 97  TCLRKTCFPGSWSSRDKLGKEASEKIVAVEELIGRGHFAVVAEKPPRAPVEERPIGKTVG 156
             L    F   W+   K  +E  +K   VEE++ R ++  +       P++      ++ 
Sbjct: 65  LRL----F---WTLLSK-QEEMVQK--FVEEVL-RINYKFLMS-----PIKTEQRQPSMM 108

Query: 157 LDSIISE---------------VWRCIEDHN-----------EKVIGLYGMGGVGKTTL- 189
               I +               V R ++ +             K + + G+ G GKT + 
Sbjct: 109 TRMYIEQRDRLYNDNQVFAKYNVSR-LQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVA 167

Query: 190 LKKLNNKFRDTEHDF 204
           L    +     + DF
Sbjct: 168 LDVCLSYKVQCKMDF 182

>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens} Length = 591

 Score = 50.6 bits (121), Expect = 8e-08
 Identities = 15/98 (15%), Positives = 28/98 (28%), Gaps = 3/98 (3%)

Query: 111 RDKLGKEASEKIVAVEELIGRGHFAVVAEKPPRAPVEERPIGKTVGLDSIISEV--WRCI 168
              L         +  +    G  + V        V +RP    V    +++ +      
Sbjct: 84  AALLHDGIPVVSSSSGKDSVSGITSYVRTVLCEGGVPQRP-VVFVTRKKLVNAIQQKLSK 142

Query: 169 EDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHDFDL 206
                  + ++GM G GK+ L  +        E  F  
Sbjct: 143 LKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPG 180

>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A* Length = 549

 Score = 45.4 bits (107), Expect = 5e-06
 Identities = 17/168 (10%), Positives = 51/168 (30%), Gaps = 15/168 (8%)

Query: 42  RDLVNITRDVEARVDLAVEQRLRPTHEVNGWLESAKIMLREVDYILHRGDEEIQKTCLRK 101
                 T D    +     +  R  + +  +   A  +   +D+  +     +       
Sbjct: 31  EGKNIFTEDHSELISKMSTRLERIANFLRIYRRQASELGPLIDFFNYNNQSHLAD----- 85

Query: 102 TCFPGSWSSRDKLGKEASEKIVAVEELIGRGHFAVVAEKPPRAPVEERP--IGKTVGLDS 159
                             + ++    +  +    ++  K     V ++     +   +D 
Sbjct: 86  -----FLEDYIDFAINEPD-LLRPVVIAPQFSRQMLDRKLLLGNVPKQMTCYIREYHVDR 139

Query: 160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKK-LNNKFRDTEHDFDL 206
           +I +    + D +   + L+G  G GK+ +  + L+   +    ++D 
Sbjct: 140 VI-KKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDS 186

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249

 Score = 42.5 bits (100), Expect = 6e-05
 Identities = 13/64 (20%), Positives = 26/64 (40%), Gaps = 5/64 (7%)

Query: 141 PPRAPVEERPIGKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDT 200
           P R  +    + +   + +I  ++W+   +     + +YGM G GK+ L  +        
Sbjct: 120 PQRPVI---FVTRKKLVHAIQQKLWKLNGEPG--WVTIYGMAGCGKSVLAAEAVRDHSLL 174

Query: 201 EHDF 204
           E  F
Sbjct: 175 EGCF 178

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	206
3qfl_A	115	MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-	99.6
2a5y_B	549	CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis	99.05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	98.66
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	98.65
1z6t_A	591	APAF-1, apoptotic protease activating factor 1; ca	98.62
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	98.32
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	98.27
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	98.18
2chg_A	226	Replication factor C small subunit; DNA-binding pr	98.08
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	98.07
2qen_A	350	Walker-type ATPase; unknown function; HET: ADP; 2.	98.07
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	98.06
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	98.05
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	98.04
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	98.02
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	98.02
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	98.01
1b0u_A	262	Histidine permease; ABC transporter, transport pro	97.99
1g6h_A	257	High-affinity branched-chain amino acid transport	97.99
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	97.99
1sgw_A	214	Putative ABC transporter; structural genomics, P p	97.99
1ji0_A	240	ABC transporter; ATP binding protein, structural g	97.99
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	97.98
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	97.98
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	97.97
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	97.97
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	97.96
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	97.96
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	97.95
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	97.94
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	97.94
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	97.93
2fna_A	357	Conserved hypothetical protein; structural genomic	97.93
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	97.92
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	97.92
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	97.92
1w5s_A	412	Origin recognition complex subunit 2 ORC2; replica	97.92
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	97.91
1iqp_A	327	RFCS; clamp loader, extended AAA-ATPase domain, co	97.9
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	97.85
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	97.85
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	97.85
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	97.83
1sxj_B	323	Activator 1 37 kDa subunit; clamp loader, processi	97.83
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	97.83
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	97.82
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	97.82
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	97.82
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	97.8
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	97.8
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	97.8
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	97.79
3pvs_A	447	Replication-associated recombination protein A; ma	97.78
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	97.78
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	97.77
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	97.77
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	97.77
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	97.77
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	97.76
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	97.76
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	97.76
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	97.76
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	97.76
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	97.75
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	97.75
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	97.74
2ghi_A	260	Transport protein; multidrug resistance protein, M	97.74
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	97.73
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	97.72
3pxg_A	468	Negative regulator of genetic competence CLPC/MEC;	97.71
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	97.7
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	97.69
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	97.69
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	97.68
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	97.68
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	97.67
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	97.67
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	97.67
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	97.66
2og2_A	359	Putative signal recognition particle receptor; nuc	97.66
2chq_A	319	Replication factor C small subunit; DNA-binding pr	97.65
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	97.65
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	97.64
1jr3_A	373	DNA polymerase III subunit gamma; processivity, pr	97.64
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	97.62
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	97.61
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	97.61
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	97.61
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	97.61
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	97.6
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	97.6
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	97.59
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	97.57
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	97.57
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	97.57
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	97.56
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	97.55
1sxj_A	516	Activator 1 95 kDa subunit; clamp loader, processi	97.55
3bos_A	242	Putative DNA replication factor; P-loop containing	97.55
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	97.54
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	97.53
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	97.53
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	97.51
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	97.51
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	97.51
3te6_A	318	Regulatory protein SIR3; heterochromatin, gene sil	97.48
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	97.47
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	97.47
1hqc_A	324	RUVB; extended AAA-ATPase domain, complex with nuc	97.47
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	97.46
3k1j_A	604	LON protease, ATP-dependent protease LON; ATP-bind	97.46
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	97.45
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	97.45
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	97.44
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	97.44
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	97.44
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	97.42
1p9r_A	418	General secretion pathway protein E; bacterial typ	97.42
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	97.41
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	97.4
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	97.4
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	97.4
3u61_B	324	DNA polymerase accessory protein 44; AAA+, ATP hyd	97.39
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	97.37
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	97.36
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	97.36
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	97.36
2r44_A	331	Uncharacterized protein; putative ATPase, structur	97.36
2hf9_A	226	Probable hydrogenase nickel incorporation protein	97.35
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	97.34
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	97.34
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	97.34
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	97.33
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	97.3
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	97.3
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	97.3
3co5_A	143	Putative two-component system transcriptional RES	97.3
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	97.29
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	97.29
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	97.28
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	97.26
2bjv_A	265	PSP operon transcriptional activator; AAA, transcr	97.26
3nbx_X	500	ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structu	97.25
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	97.25
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	97.23
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	97.2
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	97.19
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	97.19
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	97.19
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	97.19
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	97.19
3vfd_A	389	Spastin; ATPase, microtubule severing, hydrolase;	97.18
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	97.18
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	97.17
2ewv_A	372	Twitching motility protein PILT; pilus retraction	97.17
3hws_A	363	ATP-dependent CLP protease ATP-binding subunit CL;	97.16
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	97.14
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	97.14
2zan_A	444	Vacuolar protein sorting-associating protein 4B; S	97.12
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	97.12
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	97.12
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	97.08
1qhl_A	227	Protein (cell division protein MUKB); SMC, chromos	97.06
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	97.05
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	96.99
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	96.99
1um8_A	376	ATP-dependent CLP protease ATP-binding subunit CL;	96.98
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	96.97
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	96.95
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	96.95
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	96.93
4b4t_H	467	26S protease regulatory subunit 7 homolog; hydrola	96.93
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	96.92
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	96.92
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	96.92
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	96.91
1g8p_A	350	Magnesium-chelatase 38 kDa subunit; parallel beta	96.9
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	96.89
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	96.89
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	96.88
2c9o_A	456	RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-	96.87
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	96.86
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	96.85
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	96.84
4b4t_I	437	26S protease regulatory subunit 4 homolog; hydrola	96.84
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	96.84
2ged_A	193	SR-beta, signal recognition particle receptor beta	96.82
1g41_A	444	Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dep	96.81
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	96.81
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	96.8
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	96.79
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	96.77
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	96.76
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	96.72
2qgz_A	308	Helicase loader, putative primosome component; str	96.72
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	96.72
3hu3_A	489	Transitional endoplasmic reticulum ATPase; VCP, tr	96.7
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	96.69
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	96.68
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	96.67
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	96.64
1tue_A	212	Replication protein E1; helicase, replication, E1E	96.62
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	96.6
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	96.54
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	96.52
3fwy_A	314	Light-independent protochlorophyllide reductase I	96.48
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	96.47
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	96.46
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	96.44
3hr8_A	356	Protein RECA; alpha and beta proteins (A/B, A+B),	96.42
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	96.42
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	96.41
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	96.41
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	96.4
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	96.38
4aby_A	415	DNA repair protein RECN; hydrolase, double strand	96.38
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	96.35
1ewq_A	765	DNA mismatch repair protein MUTS; multiple domains	96.34
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	96.33
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	96.31
1wb9_A	800	DNA mismatch repair protein MUTS; DNA-binding, ATP	96.31
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	96.29
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	96.28
3upu_A	459	ATP-dependent DNA helicase DDA; RECA-like domain,	96.27
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	96.26
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	96.26
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	96.25
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	96.23
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	96.2
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	96.16
2r6a_A	454	DNAB helicase, replicative helicase; replication,	96.13
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	96.13
3ice_A	422	Transcription termination factor RHO; transcriptio	96.12
3end_A	307	Light-independent protochlorophyllide reductase ir	96.12
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	96.11
2vhj_A	331	Ntpase P4, P4; non- hydrolysable ATP analogue, hyd	96.1
2xxa_A	433	Signal recognition particle protein; protein trans	96.09
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	96.05
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	96.04
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	96.03
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	95.01
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	96.02
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	95.97
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	95.96
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	95.96
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	95.95
3f9v_A	595	Minichromosome maintenance protein MCM; replicativ	95.94
3llm_A	235	ATP-dependent RNA helicase A; alpha-beta-alpha, st	95.91
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	95.91
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	95.87
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	95.86
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	95.84
3bh0_A	315	DNAB-like replicative helicase; ATPase, replicatio	95.83
2axn_A	520	6-phosphofructo-2-kinase/fructose-2,6- biphosphata	95.83
3thx_B	918	DNA mismatch repair protein MSH3; ABC family ATPas	95.82
1g8f_A	511	Sulfate adenylyltransferase; alpha-beta protein, b	95.8
3thx_A	934	DNA mismatch repair protein MSH2; ABC family ATPas	95.78
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	95.78
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	95.78
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	95.74
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	95.71
1sky_E	473	F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alp	95.68
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	95.66
2o8b_B	1022	DNA mismatch repair protein MSH6; DNA damage respo	95.59
1u0j_A	267	DNA replication protein; AAA+ protein, P-loop atpa	95.42
2z43_A	324	DNA repair and recombination protein RADA; archaea	95.36
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	95.33
1x6v_B	630	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	95.31
4a1f_A	338	DNAB helicase, replicative DNA helicase; hydrolase	95.29
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	95.25
2q6t_A	444	DNAB replication FORK helicase; hydrolase; 2.90A {	95.15
1m8p_A	573	Sulfate adenylyltransferase; rossmann fold, phosph	95.13
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	95.05
1v5w_A	343	DMC1, meiotic recombination protein DMC1/LIM15 hom	95.05
3q5d_A	447	Atlastin-1; G protein, GTPase, GDP/GTP binding, hy	95.02
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	94.99
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	94.99
2gks_A	546	Bifunctional SAT/APS kinase; transferase, sulfuryl	94.87
1u94_A	356	RECA protein, recombinase A; homologous recombinat	94.86
3l0o_A	427	Transcription termination factor RHO; helicase, RH	94.83
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	94.79
3e1s_A	574	Exodeoxyribonuclease V, subunit RECD; alpha and be	94.79
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	94.75
3bgw_A	444	DNAB-like replicative helicase; ATPase, replicatio	94.7
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	94.68
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	94.58
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	94.55
4ag6_A	392	VIRB4 ATPase, type IV secretory pathway VIRB4 comp	94.55
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	94.48
2i1q_A	322	DNA repair and recombination protein RADA; ATPase,	94.47
2zts_A	251	Putative uncharacterized protein PH0186; KAIC like	94.34
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	94.32
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	94.31
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	94.31
1xp8_A	366	RECA protein, recombinase A; recombination, radior	94.24
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	94.2
1of1_A	376	Thymidine kinase; transferase, antiviral drug, enz	94.17
3vkw_A	446	Replicase large subunit; alpha/beta domain, helica	94.0
3fkq_A	373	NTRC-like two-domain protein; RER070207001320, str	93.89
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	93.77
2ck3_D	482	ATP synthase subunit beta\, mitochondrial; hydrola	93.73
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	93.73
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	93.68
2xau_A	773	PRE-mRNA-splicing factor ATP-dependent RNA helica;	93.59
2oze_A	298	ORF delta'; para, walker type atpases, DNA segrega	93.57
3io5_A	333	Recombination and repair protein; storage dimer, i	93.55
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	93.47
4ad8_A	517	DNA repair protein RECN; DNA binding protein, ATPa	93.38
3cio_A	299	ETK, tyrosine-protein kinase ETK; WZC, escherichia	93.3
3bfv_A	271	CAPA1, CAPB2, membrane protein CAPA1, protein tyro	93.28
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	93.22
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	93.19
4ido_A	457	Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HE	93.16
1q57_A	503	DNA primase/helicase; dntpase, DNA replication, tr	93.05
4a9a_A	376	Ribosome-interacting GTPase 1; DRG-DFRP complex, r	93.05
1ko7_A	314	HPR kinase/phosphatase; protein kinase, phosphotra	92.89
1w36_D	608	RECD, exodeoxyribonuclease V alpha chain; recombin	92.88
3vr4_A	600	V-type sodium ATPase catalytic subunit A; V-ATPase	92.41
3ez2_A	398	Plasmid partition protein A; type IA, DNA binding,	92.39
3la6_A	286	Tyrosine-protein kinase WZC; P-loop protein, nucle	92.34
4b3f_X	646	DNA-binding protein smubp-2; hydrolase, helicase;	92.14
3gqb_A	578	V-type ATP synthase alpha chain; A3B3, V-ATPase, A	91.93
2gk6_A	624	Regulator of nonsense transcripts 1; UPF1, helicas	91.87
1fx0_B	498	ATP synthase beta chain; latent ATPase, thermal st	91.85
2c61_A	469	A-type ATP synthase non-catalytic subunit B; hydro	91.8
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	91.79
3mca_A	592	HBS1, elongation factor 1 alpha-like protein; prot	91.77
3mfy_A	588	V-type ATP synthase alpha chain; A-type ATP syntha	91.7
3k9g_A	267	PF-32 protein; ssgcid, SBRI, decode biostructures,	91.53
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	91.45
3vr4_D	465	V-type sodium ATPase subunit D; V-ATPase, rotary m	91.26
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	91.18
3gqb_B	464	V-type ATP synthase beta chain; A3B3, V-ATPase, AT	91.15
1ny5_A	387	Transcriptional regulator (NTRC family); AAA+ ATPa	91.08
1r5b_A	467	Eukaryotic peptide chain release factor GTP-bindi	90.93
3ez9_A	403	Para; DNA binding, winged-HTH, partition, biosynth	90.75
1knx_A	312	Probable HPR(Ser) kinase/phosphatase; HPR kinase,	90.62
2wjy_A	800	Regulator of nonsense transcripts 1; nonsense medi	90.44
2ck3_A	510	ATP synthase subunit alpha\, mitochondrial; hydrol	90.17
3cmw_A	1706	Protein RECA, recombinase A; homologous recombinat	90.06
3czq_A	304	Putative polyphosphate kinase 2; structural genomi	90.02
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	89.93
2r9v_A	515	ATP synthase subunit alpha; TM1612, structural gen	89.83
2qe7_A	502	ATP synthase subunit alpha; blockage of ATP hydrol	89.64
3cmw_A	1706	Protein RECA, recombinase A; homologous recombinat	89.62
2ius_A	512	DNA translocase FTSK; nucleotide-binding, chromoso	89.57
1e9r_A	437	Conjugal transfer protein TRWB; coupling protein,	89.32
3cmu_A	2050	Protein RECA, recombinase A; homologous recombinat	89.27
2xzl_A	802	ATP-dependent helicase NAM7; hydrolase-RNA complex	89.22
3vqt_A	548	RF-3, peptide chain release factor 3; translation,	88.99
3dzd_A	368	Transcriptional regulator (NTRC family); sigma43 a	88.94
3e2i_A	219	Thymidine kinase; Zn-binding, ATP-binding, DNA syn	88.35
1cip_A	353	Protein (guanine nucleotide-binding protein alpha-	88.23
3oaa_A	513	ATP synthase subunit alpha; rossmann fold, hydrola	88.09
3zvr_A	772	Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito	87.5
3cmu_A	2050	Protein RECA, recombinase A; homologous recombinat	87.35
1ihu_A	589	Arsenical pump-driving ATPase; aluminum fluoride,	86.88
2olr_A	540	Phosphoenolpyruvate carboxykinase; carbon dioxide,	86.63
1j3b_A	529	ATP-dependent phosphoenolpyruvate carboxykinase; a	86.62
1ytm_A	532	Phosphoenolpyruvate carboxykinase [ATP], phosphoen	86.37
1fx0_A	507	ATP synthase alpha chain; latent ATPase, thermal s	86.33
4akg_A	2695	Glutathione S-transferase class-MU 26 kDa isozyme	86.28
1ii2_A	524	Phosphoenolpyruvate carboxykinase; phosphate bindi	86.19
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	86.05
2fz4_A	237	DNA repair protein RAD25; RECA-like domain, DNA da	85.65
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	85.27
3avx_A	1289	Elongation factor TS, elongation factor TU, linke	84.65
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	83.78
4akg_A	2695	Glutathione S-transferase class-MU 26 kDa isozyme	83.54
2j9r_A	214	Thymidine kinase; TK1, DNK, lasso, transferase, AT	83.31
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	83.04
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	82.92
3b6e_A	216	Interferon-induced helicase C domain-containing P;	82.61
1g5t_A	196	COB(I)alamin adenosyltransferase; P-loop protein,	82.21
3f8t_A	506	Predicted ATPase involved in replication control,	80.73
2gxq_A	207	Heat resistant RNA dependent ATPase; RNA helicase,	80.24

>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}

Probab=99.60  E-value=1.6e-15  Score=103.86  Aligned_cols=82  Identities=7%  Similarity=0.098  Sum_probs=70.6

Q ss_pred             hhhhhhhhHhhhhhhhccccccchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCchhHHHHHHHHHHHHHHHHHH
Q 037945            8 IMDYLVCPLCGVISKHCGYVCGLTDSLNSLREAGRDLVNITRDVEARVDLAVEQR-LRPTHEVNGWLESAKIMLREVDYI   86 (206)
Q Consensus         8 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~ae~~~-~~~~~~~~~wl~~l~~~~~~~ed~   86 (206)
                      +++.+..||.+++.+++.++.+++++++.|+++|+.|+++|.+       |+.+. ...++.++.|+.++|+++||+||+
T Consensus         2 ~v~~ll~KL~~ll~~E~~l~~gv~~~i~~Lk~eL~~m~a~L~d-------a~~~~~~~~d~~vk~W~~~vrdlaYD~ED~   74 (115)
T 3qfl_A            2 AISNLIPKLGELLTEEFKLHKGVKKNIEDLGKELESMNAALIK-------IGEVPREQLDSQDKLWADEVRELSYVIEDV   74 (115)
T ss_dssp             TTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HTTSCGGGCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHH-------HHHhccccCCHHHHHHHHHHHHHHHHHHHH
Confidence            3455666799999999999999999999999999999999999       54442 123589999999999999999999


Q ss_pred             HhhhhHhhhh
Q 037945           87 LHRGDEEIQK   96 (206)
Q Consensus        87 ld~~~~~~~~   96 (206)
                      ||+|.++...
T Consensus        75 iD~f~~~~~~   84 (115)
T 3qfl_A           75 VDKFLVQVDG   84 (115)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHhcc
Confidence            9999998754

>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*

Probab=99.05  E-value=1.6e-10  Score=99.25  Aligned_cols=50  Identities=14%  Similarity=0.166  Sum_probs=43.9

Q ss_pred             cchHHHHHHHHHhhhcC---CCeEEEEEcCCCCcHHHHHHHHHh--hhcCCCCCCc
Q 037945          155 VGLDSIISEVWRCIEDH---NEKVIGLYGMGGVGKTTLLKKLNN--KFRDTEHDFD  205 (206)
Q Consensus       155 ~g~~~~~~~l~~~L~~~---~~~vI~IvG~~G~GKTTLa~~i~~--~~~~~~~~Fd  205 (206)
                      +||+.++++|..+|..+   +.++|+|+||||+||||||+.+|+  +..+. ++|+
T Consensus       131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~-~~F~  185 (549)
T 2a5y_B          131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIG-INYD  185 (549)
T ss_dssp             CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBT-TTBS
T ss_pred             CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHh-ccCC
Confidence            69999999999999764   678999999999999999999998  45555 7786

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*

Probab=98.66  E-value=7e-09  Score=93.77  Aligned_cols=51  Identities=16%  Similarity=0.153  Sum_probs=42.8

Q ss_pred             ccchHHHHHHHHHhhhc-CCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCc
Q 037945          154 TVGLDSIISEVWRCIED-HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHDFD  205 (206)
Q Consensus       154 ~~g~~~~~~~l~~~L~~-~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~Fd  205 (206)
                      .+||+.++++|..+|.+ +..++|+|+||||+||||||+.+|++..+. .+|+
T Consensus       130 ~VGRe~eLeeL~elL~~~d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~-~~Fd  181 (1221)
T 1vt4_I          130 NVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQ-CKMD  181 (1221)
T ss_dssp             CCCCHHHHHHHHHHHHHCCSSCEEEECCSTTSSHHHHHHHHHHHCHHH-HHHS
T ss_pred             CCCcHHHHHHHHHHHhccCCCeEEEEEcCCCccHHHHHHHHHHhhHHH-HhCC
Confidence            58999999999999986 557899999999999999999999865433 3443

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=98.65  E-value=1.9e-08  Score=93.14  Aligned_cols=53  Identities=19%  Similarity=0.225  Sum_probs=44.2

Q ss_pred             CCccchHHHHHHHHHhhhc--CCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCCC
Q 037945          152 GKTVGLDSIISEVWRCIED--HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHDF  204 (206)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~--~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~F  204 (206)
                      ..++||+.++++|...|..  ++.++|+|+||||+||||||+.+|++.....++|
T Consensus       124 ~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~  178 (1249)
T 3sfz_A          124 VIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCF  178 (1249)
T ss_dssp             SSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTS
T ss_pred             ceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhC
Confidence            5589999999999999963  5688999999999999999999998754322444

>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}

Probab=98.62  E-value=1.9e-08  Score=86.80  Aligned_cols=46  Identities=15%  Similarity=0.226  Sum_probs=40.8

Q ss_pred             CCccchHHHHHHHHHhhhc--CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          152 GKTVGLDSIISEVWRCIED--HNEKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~--~~~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      ..++||+.+++.|...|..  ++.++|+|+||+|+||||||+.++++.
T Consensus       124 ~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~  171 (591)
T 1z6t_A          124 VVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDH  171 (591)
T ss_dssp             SSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCH
T ss_pred             CeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhch
Confidence            4589999999999999974  567899999999999999999998764

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=98.32  E-value=6.7e-07  Score=64.28  Aligned_cols=46  Identities=22%  Similarity=0.146  Sum_probs=34.9

Q ss_pred             cchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          155 VGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       155 ~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      +|....+..+...+..++  +++++|++|+|||||++.+.+.. +.+|.
T Consensus        17 ~g~~~~l~~vsl~i~~Ge--~v~L~G~nGaGKTTLlr~l~g~l-~~~G~   62 (158)
T 1htw_A           17 FGKKFAEILLKLHTEKAI--MVYLNGDLGAGKTTLTRGMLQGI-GHQGN   62 (158)
T ss_dssp             HHHHHHHHHHHHCCSSCE--EEEEECSTTSSHHHHHHHHHHHT-TCCSC
T ss_pred             HHHHHHHhccccccCCCC--EEEEECCCCCCHHHHHHHHHHhC-CCCCe
Confidence            444445555655566677  99999999999999999999987 54443

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=98.27  E-value=1.8e-06  Score=62.80  Aligned_cols=46  Identities=24%  Similarity=0.395  Sum_probs=40.4

Q ss_pred             CCccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          152 GKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      ..++|++..++.+...+..+....+.|+|++|+|||||++.+++..
T Consensus        22 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~   67 (195)
T 1jbk_A           22 DPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRI   67 (195)
T ss_dssp             CCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             cccccchHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHH
Confidence            4588999999999999987666678999999999999999998764

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=98.18  E-value=2.5e-06  Score=61.90  Aligned_cols=46  Identities=26%  Similarity=0.354  Sum_probs=40.3

Q ss_pred             CCccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          152 GKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      ..++|++..+..+...+......-+-|+|+.|+|||||++.+.+..
T Consensus        22 ~~~~g~~~~~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~   67 (187)
T 2p65_A           22 DPVIGRDTEIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKI   67 (187)
T ss_dssp             CCCCSCHHHHHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred             chhhcchHHHHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHHH
Confidence            4588999999999999887666678999999999999999998765

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=98.08  E-value=5.3e-06  Score=61.75  Aligned_cols=46  Identities=26%  Similarity=0.340  Sum_probs=39.8

Q ss_pred             CCccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          152 GKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      ..++|++..++.+..++..+....+.|+|++|+|||||++.+++..
T Consensus        17 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~   62 (226)
T 2chg_A           17 DEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDL   62 (226)
T ss_dssp             GGCCSCHHHHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred             HHHcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence            4478999999999999988765569999999999999999998754

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=98.07  E-value=2.3e-06  Score=69.22  Aligned_cols=53  Identities=25%  Similarity=0.255  Sum_probs=40.3

Q ss_pred             CccccCCCCccc-hHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCC
Q 037945          145 PVEERPIGKTVG-LDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDT  200 (206)
Q Consensus       145 ~~~~~~~~~~~g-~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~  200 (206)
                      .+...+.+..++ ....++.+ ..+..++  +++|+|++|+|||||++.|.+...+.
T Consensus        45 ~i~~~~l~~~~~tg~~ald~l-l~i~~Gq--~~gIiG~nGaGKTTLl~~I~g~~~~~   98 (347)
T 2obl_A           45 PLLRQVIDQPFILGVRAIDGL-LTCGIGQ--RIGIFAGSGVGKSTLLGMICNGASAD   98 (347)
T ss_dssp             STTCCCCCSEECCSCHHHHHH-SCEETTC--EEEEEECTTSSHHHHHHHHHHHSCCS
T ss_pred             CeeecccceecCCCCEEEEee-eeecCCC--EEEEECCCCCCHHHHHHHHhcCCCCC
Confidence            344445556665 34567777 6667788  99999999999999999999987654

>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}

Probab=98.07  E-value=6.3e-06  Score=65.88  Aligned_cols=43  Identities=21%  Similarity=0.302  Sum_probs=38.5

Q ss_pred             CCccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhh
Q 037945          152 GKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNK  196 (206)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~  196 (206)
                      ..++||+.+++.|...+..+  ..+.|+|+.|+|||||++.+.+.
T Consensus        12 ~~~~gR~~el~~L~~~l~~~--~~v~i~G~~G~GKT~Ll~~~~~~   54 (350)
T 2qen_A           12 EDIFDREEESRKLEESLENY--PLTLLLGIRRVGKSSLLRAFLNE   54 (350)
T ss_dssp             GGSCSCHHHHHHHHHHHHHC--SEEEEECCTTSSHHHHHHHHHHH
T ss_pred             HhcCChHHHHHHHHHHHhcC--CeEEEECCCcCCHHHHHHHHHHH
Confidence            45899999999999998876  59999999999999999998875

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=98.06  E-value=3.6e-06  Score=67.62  Aligned_cols=50  Identities=20%  Similarity=0.323  Sum_probs=39.8

Q ss_pred             ccCCCCccchHHHHHHHHHhhhcC-----CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          148 ERPIGKTVGLDSIISEVWRCIEDH-----NEKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       148 ~~~~~~~~g~~~~~~~l~~~L~~~-----~~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      +...+..+|.+..++.+...+..+     ....+.++|++|+|||||++.+.+..
T Consensus        21 ~~~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l   75 (334)
T 1in4_A           21 PKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASEL   75 (334)
T ss_dssp             CSSGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHH
T ss_pred             CccHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence            334456888888888888777642     34589999999999999999999876

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=98.05  E-value=6.5e-06  Score=61.99  Aligned_cols=47  Identities=19%  Similarity=0.331  Sum_probs=40.0

Q ss_pred             CCccchHHHHHHHHHhhhcCC-CeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945          152 GKTVGLDSIISEVWRCIEDHN-EKVIGLYGMGGVGKTTLLKKLNNKFR  198 (206)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~~~-~~vI~IvG~~G~GKTTLa~~i~~~~~  198 (206)
                      ..++|++..++.+..++..+. ...+.|+|++|+|||||++.+++...
T Consensus        23 ~~~~g~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~   70 (250)
T 1njg_A           23 ADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN   70 (250)
T ss_dssp             GGCCSCHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred             HHHhCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence            458999999999999988754 34789999999999999999988653

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=98.04  E-value=1.6e-06  Score=66.41  Aligned_cols=37  Identities=27%  Similarity=0.365  Sum_probs=29.9

Q ss_pred             HHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCC
Q 037945          164 VWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEH  202 (206)
Q Consensus       164 l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~  202 (206)
                      +...+..++  +++|+|++|+|||||++.+.+-..+.+|
T Consensus        24 isl~i~~Ge--~~~iiG~nGsGKSTLl~~l~Gl~~p~~G   60 (235)
T 3tif_A           24 VNLNIKEGE--FVSIMGPSGSGKSTMLNIIGCLDKPTEG   60 (235)
T ss_dssp             EEEEECTTC--EEEEECSTTSSHHHHHHHHTTSSCCSEE
T ss_pred             eeEEEcCCC--EEEEECCCCCcHHHHHHHHhcCCCCCce
Confidence            334455677  9999999999999999999988776544

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=98.02  E-value=1.6e-06  Score=65.81  Aligned_cols=40  Identities=25%  Similarity=0.314  Sum_probs=31.4

Q ss_pred             HHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCC
Q 037945          161 ISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEH  202 (206)
Q Consensus       161 ~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~  202 (206)
                      ++++...+..++  +++|+|++|+|||||++.+.+-..+.+|
T Consensus        20 l~~vsl~i~~Ge--~~~iiG~nGsGKSTLl~~l~Gl~~p~~G   59 (224)
T 2pcj_A           20 LKGISLSVKKGE--FVSIIGASGSGKSTLLYILGLLDAPTEG   59 (224)
T ss_dssp             EEEEEEEEETTC--EEEEEECTTSCHHHHHHHHTTSSCCSEE
T ss_pred             EeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhcCCCCCce
Confidence            334444456677  9999999999999999999988766544

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=98.02  E-value=2.5e-06  Score=66.46  Aligned_cols=50  Identities=24%  Similarity=0.388  Sum_probs=36.4

Q ss_pred             CCccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          152 GKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      +..||....++++...+..++  +++|+|++|+|||||++.|.+-..+.+|.
T Consensus        18 ~~~~~~~~vL~~vsl~i~~Ge--~~~liG~nGsGKSTLl~~l~Gl~~p~~G~   67 (266)
T 4g1u_C           18 HYHVQQQALINDVSLHIASGE--MVAIIGPNGAGKSTLLRLLTGYLSPSHGE   67 (266)
T ss_dssp             EEEETTEEEEEEEEEEEETTC--EEEEECCTTSCHHHHHHHHTSSSCCSSCE
T ss_pred             EEEeCCeeEEEeeEEEEcCCC--EEEEECCCCCcHHHHHHHHhcCCCCCCcE
Confidence            344554334444444455678  99999999999999999999987776553

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=98.01  E-value=5.9e-06  Score=66.90  Aligned_cols=46  Identities=22%  Similarity=0.335  Sum_probs=39.8

Q ss_pred             CCccchHHHHHHHHHhhhc----CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          152 GKTVGLDSIISEVWRCIED----HNEKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~----~~~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      ..++|++.+++.+..++..    +....+.|+|++|+|||||++.+++..
T Consensus        20 ~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~   69 (386)
T 2qby_A           20 DELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKL   69 (386)
T ss_dssp             SCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence            4589999999999998874    345689999999999999999998865

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=97.99  E-value=2.2e-06  Score=66.69  Aligned_cols=40  Identities=28%  Similarity=0.349  Sum_probs=31.4

Q ss_pred             HHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCC
Q 037945          161 ISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEH  202 (206)
Q Consensus       161 ~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~  202 (206)
                      ++++...+..++  +++|+|++|+|||||++.|.+-..+.+|
T Consensus        22 l~~vsl~i~~Ge--~~~liG~nGsGKSTLlk~l~Gl~~p~~G   61 (262)
T 1b0u_A           22 LKGVSLQARAGD--VISIIGSSGSGKSTFLRCINFLEKPSEG   61 (262)
T ss_dssp             EEEEEEEECTTC--EEEEECCTTSSHHHHHHHHTTSSCCSEE
T ss_pred             EEeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence            344444455677  9999999999999999999998766544

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=97.99  E-value=2.1e-06  Score=66.57  Aligned_cols=47  Identities=21%  Similarity=0.284  Sum_probs=33.9

Q ss_pred             ccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCC
Q 037945          154 TVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEH  202 (206)
Q Consensus       154 ~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~  202 (206)
                      .||....++++...+..++  +++|+|++|+|||||++.|.+-..+.+|
T Consensus        16 ~y~~~~vl~~vsl~i~~Ge--~~~liG~nGsGKSTLlk~l~Gl~~p~~G   62 (257)
T 1g6h_A           16 YFGEFKALDGVSISVNKGD--VTLIIGPNGSGKSTLINVITGFLKADEG   62 (257)
T ss_dssp             EETTEEEEEEECCEEETTC--EEEEECSTTSSHHHHHHHHTTSSCCSEE
T ss_pred             EECCEeeEeeeEEEEeCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence            3443223344444455677  9999999999999999999998766544

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=97.99  E-value=2.6e-06  Score=65.50  Aligned_cols=39  Identities=21%  Similarity=0.361  Sum_probs=30.9

Q ss_pred             HHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          163 EVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       163 ~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      ++...+..++  +++|+|++|+|||||++.|.+-..+.+|.
T Consensus        20 ~vsl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~   58 (243)
T 1mv5_A           20 DISFEAQPNS--IIAFAGPSGGGKSTIFSLLERFYQPTAGE   58 (243)
T ss_dssp             EEEEEECTTE--EEEEECCTTSSHHHHHHHHTTSSCCSBSC
T ss_pred             EeEEEEcCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCcE
Confidence            3334455566  99999999999999999999987765554

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=97.99  E-value=1.9e-06  Score=65.02  Aligned_cols=38  Identities=34%  Similarity=0.527  Sum_probs=30.0

Q ss_pred             HHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCC
Q 037945          163 EVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEH  202 (206)
Q Consensus       163 ~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~  202 (206)
                      ++...+..++  +++|+|++|+|||||++.+.+-..+.+|
T Consensus        27 ~vsl~i~~Ge--~~~iiG~NGsGKSTLlk~l~Gl~~p~~G   64 (214)
T 1sgw_A           27 RITMTIEKGN--VVNFHGPNGIGKTTLLKTISTYLKPLKG   64 (214)
T ss_dssp             EEEEEEETTC--CEEEECCTTSSHHHHHHHHTTSSCCSEE
T ss_pred             eeEEEEcCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCe
Confidence            3334445577  9999999999999999999998766544

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=97.99  E-value=2.2e-06  Score=65.80  Aligned_cols=39  Identities=23%  Similarity=0.322  Sum_probs=30.6

Q ss_pred             HHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCC
Q 037945          162 SEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEH  202 (206)
Q Consensus       162 ~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~  202 (206)
                      +++...+..++  +++|+|++|+|||||++.|.+-..+.+|
T Consensus        23 ~~vsl~i~~Ge--~~~l~G~nGsGKSTLl~~l~Gl~~p~~G   61 (240)
T 1ji0_A           23 KGIDLKVPRGQ--IVTLIGANGAGKTTTLSAIAGLVRAQKG   61 (240)
T ss_dssp             EEEEEEEETTC--EEEEECSTTSSHHHHHHHHTTSSCCSEE
T ss_pred             eeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence            33444455677  9999999999999999999998766544

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=97.98  E-value=2.4e-06  Score=66.46  Aligned_cols=49  Identities=27%  Similarity=0.293  Sum_probs=34.3

Q ss_pred             CCccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCC
Q 037945          152 GKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEH  202 (206)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~  202 (206)
                      +..||....++++...+..++  +++|+|++|+|||||++.|.+-..+.+|
T Consensus        31 ~~~y~~~~vL~~vsl~i~~Ge--i~~liG~NGsGKSTLlk~l~Gl~~p~~G   79 (263)
T 2olj_A           31 KKSFGSLEVLKGINVHIREGE--VVVVIGPSGSGKSTFLRCLNLLEDFDEG   79 (263)
T ss_dssp             EEEETTEEEEEEEEEEECTTC--EEEEECCTTSSHHHHHHHHTTSSCCSEE
T ss_pred             EEEECCEEEEEeeEEEEcCCC--EEEEEcCCCCcHHHHHHHHHcCCCCCCc
Confidence            334443223334444445577  9999999999999999999998766544

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=97.98  E-value=2.3e-06  Score=66.99  Aligned_cols=39  Identities=26%  Similarity=0.427  Sum_probs=30.5

Q ss_pred             HHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCC
Q 037945          162 SEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEH  202 (206)
Q Consensus       162 ~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~  202 (206)
                      +++...+..++  +++|+|++|+|||||++.|.+-..+.+|
T Consensus        25 ~~isl~i~~Ge--~~~iiGpnGsGKSTLl~~l~Gl~~p~~G   63 (275)
T 3gfo_A           25 KGINMNIKRGE--VTAILGGNGVGKSTLFQNFNGILKPSSG   63 (275)
T ss_dssp             EEEEEEEETTS--EEEEECCTTSSHHHHHHHHTTSSCCSEE
T ss_pred             EeeEEEEcCCC--EEEEECCCCCCHHHHHHHHHcCCCCCCe
Confidence            33444455577  9999999999999999999987766544

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=97.97  E-value=5.9e-06  Score=65.56  Aligned_cols=45  Identities=18%  Similarity=0.146  Sum_probs=36.0

Q ss_pred             CCCCccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          150 PIGKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       150 ~~~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      .++..|+ ...++++...+..++  +++|+|++|+|||||++.|.+..
T Consensus       106 ~vs~~y~-~~vL~~vsl~i~~Ge--~vaIvGpsGsGKSTLl~lL~gl~  150 (305)
T 2v9p_A          106 NIELITF-INALKLWLKGIPKKN--CLAFIGPPNTGKSMLCNSLIHFL  150 (305)
T ss_dssp             TCCHHHH-HHHHHHHHHTCTTCS--EEEEECSSSSSHHHHHHHHHHHH
T ss_pred             EEEEEcC-hhhhccceEEecCCC--EEEEECCCCCcHHHHHHHHhhhc
Confidence            3344455 456777887788888  99999999999999999998764

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=97.97  E-value=2.5e-06  Score=64.98  Aligned_cols=35  Identities=29%  Similarity=0.408  Sum_probs=28.8

Q ss_pred             HhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCC
Q 037945          166 RCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEH  202 (206)
Q Consensus       166 ~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~  202 (206)
                      ..+..++  +++|+|++|+|||||++.|.+-..+.+|
T Consensus        29 l~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~p~~G   63 (229)
T 2pze_A           29 FKIERGQ--LLAVAGSTGAGKTSLLMMIMGELEPSEG   63 (229)
T ss_dssp             EEEETTC--EEEEECCTTSSHHHHHHHHTTSSCCSEE
T ss_pred             EEEcCCC--EEEEECCCCCCHHHHHHHHhCCCcCCcc
Confidence            3344577  9999999999999999999998776544

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=97.96  E-value=2.7e-06  Score=65.94  Aligned_cols=49  Identities=29%  Similarity=0.468  Sum_probs=34.3

Q ss_pred             CCccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCC
Q 037945          152 GKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEH  202 (206)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~  202 (206)
                      +..||....++++...+..++  +++|+|++|+|||||++.+.+-..+.+|
T Consensus        22 ~~~y~~~~vl~~vsl~i~~Ge--i~~l~G~NGsGKSTLlk~l~Gl~~p~~G   70 (256)
T 1vpl_A           22 RKRIGKKEILKGISFEIEEGE--IFGLIGPNGAGKTTTLRIISTLIKPSSG   70 (256)
T ss_dssp             EEEETTEEEEEEEEEEECTTC--EEEEECCTTSSHHHHHHHHTTSSCCSEE
T ss_pred             EEEECCEEEEEeeEEEEcCCc--EEEEECCCCCCHHHHHHHHhcCCCCCce
Confidence            334443223333444445577  9999999999999999999998766544

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=97.96  E-value=5.6e-06  Score=68.99  Aligned_cols=55  Identities=24%  Similarity=0.370  Sum_probs=41.1

Q ss_pred             CccccCCCCccc-hHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCC
Q 037945          145 PVEERPIGKTVG-LDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEH  202 (206)
Q Consensus       145 ~~~~~~~~~~~g-~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~  202 (206)
                      .+...+.+..++ ....++.+ ..+..++  +++|+|++|+|||||++.|.+...+..+
T Consensus       131 ~l~~~~v~~~~~tg~~vld~v-l~i~~Gq--~~~IvG~sGsGKSTLl~~Iag~~~~~~G  186 (438)
T 2dpy_A          131 PLQRTPIEHVLDTGVRAINAL-LTVGRGQ--RMGLFAGSGVGKSVLLGMMARYTRADVI  186 (438)
T ss_dssp             TTTSCCCCSBCCCSCHHHHHH-SCCBTTC--EEEEEECTTSSHHHHHHHHHHHSCCSEE
T ss_pred             ceEEeccceecCCCceEEeee-EEecCCC--EEEEECCCCCCHHHHHHHHhcccCCCeE
Confidence            344444555665 34577777 6677788  9999999999999999999998766433

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=97.95  E-value=2.8e-06  Score=66.66  Aligned_cols=49  Identities=33%  Similarity=0.384  Sum_probs=34.8

Q ss_pred             CCccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCC
Q 037945          152 GKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEH  202 (206)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~  202 (206)
                      +..||....++++...+..++  +++|+|++|+|||||++.|.+-..+.+|
T Consensus        28 ~~~y~~~~vL~~isl~i~~Ge--~~~liG~NGsGKSTLlk~l~Gl~~p~~G   76 (279)
T 2ihy_A           28 GRMKQGKTILKKISWQIAKGD--KWILYGLNGAGKTTLLNILNAYEPATSG   76 (279)
T ss_dssp             EEEETTEEEEEEEEEEEETTC--EEEEECCTTSSHHHHHHHHTTSSCCSEE
T ss_pred             EEEECCEEEEEeeeEEEcCCC--EEEEECCCCCcHHHHHHHHhCCCCCCCe
Confidence            334443333444444455677  9999999999999999999998766544

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=97.94  E-value=2.3e-06  Score=65.56  Aligned_cols=37  Identities=24%  Similarity=0.383  Sum_probs=29.5

Q ss_pred             HHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCC
Q 037945          164 VWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEH  202 (206)
Q Consensus       164 l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~  202 (206)
                      +...+..++  +++|+|++|+|||||++.|.+-..+.+|
T Consensus        24 vsl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~p~~G   60 (237)
T 2cbz_A           24 ITFSIPEGA--LVAVVGQVGCGKSSLLSALLAEMDKVEG   60 (237)
T ss_dssp             EEEEECTTC--EEEEECSTTSSHHHHHHHHTTCSEEEEE
T ss_pred             eEEEECCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence            334455677  9999999999999999999987765434

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=97.94  E-value=3.1e-06  Score=65.26  Aligned_cols=37  Identities=30%  Similarity=0.443  Sum_probs=29.6

Q ss_pred             HHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCC
Q 037945          164 VWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEH  202 (206)
Q Consensus       164 l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~  202 (206)
                      +...+..++  +++|+|++|+|||||++.|.+-..+.+|
T Consensus        28 vsl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~p~~G   64 (247)
T 2ff7_A           28 INLSIKQGE--VIGIVGRSGSGKSTLTKLIQRFYIPENG   64 (247)
T ss_dssp             EEEEEETTC--EEEEECSTTSSHHHHHHHHTTSSCCSEE
T ss_pred             eEEEEcCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence            333445577  9999999999999999999998766544

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=97.93  E-value=3.1e-06  Score=65.46  Aligned_cols=39  Identities=23%  Similarity=0.365  Sum_probs=30.8

Q ss_pred             HHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCC
Q 037945          162 SEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEH  202 (206)
Q Consensus       162 ~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~  202 (206)
                      +++...+..++  +++|+|++|+|||||++.+.+-..+.+|
T Consensus        22 ~~isl~i~~Ge--~~~l~G~nGsGKSTLl~~l~Gl~~p~~G   60 (253)
T 2nq2_C           22 QQLNFDLNKGD--ILAVLGQNGCGKSTLLDLLLGIHRPIQG   60 (253)
T ss_dssp             EEEEEEEETTC--EEEEECCSSSSHHHHHHHHTTSSCCSEE
T ss_pred             EEEEEEECCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence            33444455677  9999999999999999999998766544

>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20

Probab=97.93  E-value=1.2e-05  Score=64.40  Aligned_cols=42  Identities=14%  Similarity=0.215  Sum_probs=37.2

Q ss_pred             CCccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          152 GKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      ..++||+.+++.|.. +..   .++.|+|+.|+|||||++.+.+..
T Consensus        13 ~~~~gR~~el~~L~~-l~~---~~v~i~G~~G~GKT~L~~~~~~~~   54 (357)
T 2fna_A           13 KDFFDREKEIEKLKG-LRA---PITLVLGLRRTGKSSIIKIGINEL   54 (357)
T ss_dssp             GGSCCCHHHHHHHHH-TCS---SEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             HHhcChHHHHHHHHH-hcC---CcEEEECCCCCCHHHHHHHHHHhc
Confidence            458999999999999 765   599999999999999999998764

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=97.92  E-value=3.5e-06  Score=65.68  Aligned_cols=37  Identities=27%  Similarity=0.316  Sum_probs=29.6

Q ss_pred             HHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCC
Q 037945          164 VWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEH  202 (206)
Q Consensus       164 l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~  202 (206)
                      +...+..++  +++|+|++|+|||||++.|.+-..+.+|
T Consensus        26 vsl~i~~Ge--~~~liG~nGsGKSTLl~~i~Gl~~p~~G   62 (266)
T 2yz2_A           26 VSLVINEGE--CLLVAGNTGSGKSTLLQIVAGLIEPTSG   62 (266)
T ss_dssp             EEEEECTTC--EEEEECSTTSSHHHHHHHHTTSSCCSEE
T ss_pred             eEEEEcCCC--EEEEECCCCCcHHHHHHHHhCCCCCCCc
Confidence            333445577  9999999999999999999998766544

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=97.92  E-value=3.5e-06  Score=65.84  Aligned_cols=39  Identities=26%  Similarity=0.290  Sum_probs=30.4

Q ss_pred             HHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCC
Q 037945          162 SEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEH  202 (206)
Q Consensus       162 ~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~  202 (206)
                      +++...+..++  +++|+|++|+|||||++.|.+-..+.+|
T Consensus        36 ~~vsl~i~~Ge--~~~i~G~nGsGKSTLlk~l~Gl~~p~~G   74 (271)
T 2ixe_A           36 QGLTFTLYPGK--VTALVGPNGSGKSTVAALLQNLYQPTGG   74 (271)
T ss_dssp             EEEEEEECTTC--EEEEECSTTSSHHHHHHHHTTSSCCSEE
T ss_pred             EeeEEEECCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCC
Confidence            33334444577  9999999999999999999998766544

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.92  E-value=1.3e-05  Score=64.39  Aligned_cols=47  Identities=21%  Similarity=0.440  Sum_probs=40.3

Q ss_pred             CCCccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          151 IGKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       151 ~~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      ...++|.+..++.+...+..+.+.-+.++|++|+||||+++.+.+..
T Consensus        24 ~~~~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l   70 (340)
T 1sxj_C           24 LDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREI   70 (340)
T ss_dssp             GGGCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred             HHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence            34578988899999999998875449999999999999999998764

>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*

Probab=97.92  E-value=6.3e-06  Score=67.55  Aligned_cols=46  Identities=20%  Similarity=0.102  Sum_probs=36.8

Q ss_pred             CCccchHHHHHHHHHhh-hc---C---CCeEEEE--EcCCCCcHHHHHHHHHhhh
Q 037945          152 GKTVGLDSIISEVWRCI-ED---H---NEKVIGL--YGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       152 ~~~~g~~~~~~~l~~~L-~~---~---~~~vI~I--vG~~G~GKTTLa~~i~~~~  197 (206)
                      ..++|++.+++.+...+ ..   +   ....+.|  +|++|+|||||++.+++..
T Consensus        22 ~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~   76 (412)
T 1w5s_A           22 PELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRV   76 (412)
T ss_dssp             SSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHH
T ss_pred             CCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHH
Confidence            45899999999998888 42   2   3445666  9999999999999998765

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=97.91  E-value=2.6e-07  Score=74.82  Aligned_cols=49  Identities=31%  Similarity=0.373  Sum_probs=34.8

Q ss_pred             CCcc-chHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCC
Q 037945          152 GKTV-GLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEH  202 (206)
Q Consensus       152 ~~~~-g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~  202 (206)
                      +..| |....++++...+..++  +++|+|++|+|||||++.|.+-..+.+|
T Consensus        21 ~~~y~g~~~vl~~vsl~i~~Ge--~~~llGpnGsGKSTLLr~iaGl~~p~~G   70 (355)
T 1z47_A           21 EKIYPGGARSVRGVSFQIREGE--MVGLLGPSGSGKTTILRLIAGLERPTKG   70 (355)
T ss_dssp             EECCTTSTTCEEEEEEEEETTC--EEEEECSTTSSHHHHHHHHHTSSCCSEE
T ss_pred             EEEEcCCCEEEeeeEEEECCCC--EEEEECCCCCcHHHHHHHHhCCCCCCcc
Confidence            3445 43323334444455677  9999999999999999999998776544

>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20

Probab=97.90  E-value=2e-05  Score=62.45  Aligned_cols=46  Identities=24%  Similarity=0.320  Sum_probs=40.4

Q ss_pred             CCccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          152 GKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      ..++|.+..++.+..++..+...-+-++|++|+||||+|+.+++..
T Consensus        25 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l   70 (327)
T 1iqp_A           25 DDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALAREL   70 (327)
T ss_dssp             TTCCSCHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred             HHhhCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHh
Confidence            4588999999999999988776669999999999999999998764

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=97.85  E-value=2.4e-05  Score=63.46  Aligned_cols=48  Identities=21%  Similarity=0.282  Sum_probs=39.8

Q ss_pred             CCccchHHHHHHHHHhhhc----CCCe--EEEEEcCCCCcHHHHHHHHHhhhcC
Q 037945          152 GKTVGLDSIISEVWRCIED----HNEK--VIGLYGMGGVGKTTLLKKLNNKFRD  199 (206)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~----~~~~--vI~IvG~~G~GKTTLa~~i~~~~~~  199 (206)
                      ..++|++..++.+..++..    +...  .+.|+|++|+|||||++.+.+....
T Consensus        17 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~   70 (389)
T 1fnn_A           17 KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKD   70 (389)
T ss_dssp             SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred             CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhh
Confidence            4589999999998888875    2333  8999999999999999999987643

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=97.85  E-value=1.5e-05  Score=58.03  Aligned_cols=42  Identities=19%  Similarity=0.234  Sum_probs=30.3

Q ss_pred             hHHHHHHHHHhhhc---CCCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945          157 LDSIISEVWRCIED---HNEKVIGLYGMGGVGKTTLLKKLNNKFR  198 (206)
Q Consensus       157 ~~~~~~~l~~~L~~---~~~~vI~IvG~~G~GKTTLa~~i~~~~~  198 (206)
                      ....++.+..++.+   ..-..+.|+|++|+|||||++.+++...
T Consensus        19 ~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~   63 (180)
T 3ec2_A           19 QNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIY   63 (180)
T ss_dssp             HHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence            34455555555443   2234899999999999999999998764

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=97.85  E-value=2.1e-05  Score=63.79  Aligned_cols=46  Identities=20%  Similarity=0.150  Sum_probs=38.7

Q ss_pred             CCccchHHHHHHHHHhhhc----CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          152 GKTVGLDSIISEVWRCIED----HNEKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~----~~~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      ..++|++..++.+...+..    +....+.|+|++|+|||||++.+++..
T Consensus        20 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~   69 (384)
T 2qby_B           20 KEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEI   69 (384)
T ss_dssp             SSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence            5689999999988877754    345689999999999999999998864

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=97.83  E-value=1.9e-05  Score=63.94  Aligned_cols=46  Identities=15%  Similarity=0.252  Sum_probs=39.4

Q ss_pred             CCccchHHHHHHHHHhhhc----CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          152 GKTVGLDSIISEVWRCIED----HNEKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~----~~~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      ..++|++..++.+..++..    +....+.|+|++|+|||||++.+++..
T Consensus        19 ~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~   68 (387)
T 2v1u_A           19 DVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRL   68 (387)
T ss_dssp             SCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence            4589999999999998853    445689999999999999999998765

>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.83  E-value=2.1e-05  Score=62.25  Aligned_cols=46  Identities=28%  Similarity=0.385  Sum_probs=40.0

Q ss_pred             CCccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          152 GKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      ..++|++..++.+..++..+....+-++|++|+||||+++.+++..
T Consensus        21 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l   66 (323)
T 1sxj_B           21 SDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHEL   66 (323)
T ss_dssp             GGCCSCTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred             HHHHCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHh
Confidence            4588999999999999988765559999999999999999998764

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.83  E-value=1.6e-05  Score=63.81  Aligned_cols=46  Identities=20%  Similarity=0.346  Sum_probs=39.5

Q ss_pred             CCccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          152 GKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      ..++|.+..++.+..++..+...-+.++|++|+|||||++.+.+..
T Consensus        37 ~~i~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l   82 (353)
T 1sxj_D           37 DEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKEL   82 (353)
T ss_dssp             TTCCSCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred             HHhhCCHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence            4588998899999999988755558999999999999999998763

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.82  E-value=1.3e-05  Score=64.48  Aligned_cols=45  Identities=18%  Similarity=0.142  Sum_probs=38.1

Q ss_pred             CCccchHHHHHHHHHhh-hcCCCeEEEEEcCCCCcHHHHHHHHHhh
Q 037945          152 GKTVGLDSIISEVWRCI-EDHNEKVIGLYGMGGVGKTTLLKKLNNK  196 (206)
Q Consensus       152 ~~~~g~~~~~~~l~~~L-~~~~~~vI~IvG~~G~GKTTLa~~i~~~  196 (206)
                      ..++|.+...+.+..++ ..+....+.|+|++|+|||||++.+.+.
T Consensus        14 ~~~vg~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~   59 (354)
T 1sxj_E           14 NALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLES   59 (354)
T ss_dssp             GGCCSCHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHH
T ss_pred             HHhcCCHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence            45789998999998888 6665444999999999999999999885

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=97.82  E-value=6.8e-06  Score=66.61  Aligned_cols=47  Identities=19%  Similarity=0.316  Sum_probs=34.9

Q ss_pred             ccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCC
Q 037945          154 TVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEH  202 (206)
Q Consensus       154 ~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~  202 (206)
                      .||....++++...+..++  +++|+|++|+|||||++.|.+-..+.+|
T Consensus        13 ~y~~~~~L~~vsl~i~~Ge--~~~llGpsGsGKSTLLr~iaGl~~p~~G   59 (359)
T 3fvq_A           13 SFQNTPVLNDISLSLDPGE--ILFIIGASGCGKTTLLRCLAGFEQPDSG   59 (359)
T ss_dssp             EETTEEEEEEEEEEECTTC--EEEEEESTTSSHHHHHHHHHTSSCCSEE
T ss_pred             EECCEEEEEeeEEEEcCCC--EEEEECCCCchHHHHHHHHhcCCCCCCc
Confidence            3443334444555566677  9999999999999999999998776544

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=97.82  E-value=1.5e-05  Score=61.46  Aligned_cols=44  Identities=23%  Similarity=0.234  Sum_probs=33.0

Q ss_pred             CCcc-chHHHHHHHHHhhhc---CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          152 GKTV-GLDSIISEVWRCIED---HNEKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       152 ~~~~-g~~~~~~~l~~~L~~---~~~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      +..| +....++++...+..   +.  +|.|+|++|+||||+++.+.+..
T Consensus        25 ~~~~~~~~~~l~~~~~~i~~~l~g~--~i~l~G~~GsGKSTl~~~La~~l   72 (250)
T 3nwj_A           25 HSPFDEEQQILKKKAEEVKPYLNGR--SMYLVGMMGSGKTTVGKIMARSL   72 (250)
T ss_dssp             -------CHHHHHHHHTTHHHHTTC--CEEEECSTTSCHHHHHHHHHHHH
T ss_pred             eEEecCcchhhhhhhhhhhhhcCCC--EEEEECCCCCCHHHHHHHHHHhc
Confidence            4445 445678888888887   77  89999999999999999998744

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=97.80  E-value=6.7e-06  Score=70.98  Aligned_cols=51  Identities=20%  Similarity=0.219  Sum_probs=39.6

Q ss_pred             CCCccch--HHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          151 IGKTVGL--DSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       151 ~~~~~g~--~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      .+..|+.  ...++++...+..++  +++|+|++|+|||||++.+.+..+|.+|.
T Consensus       347 v~~~y~~~~~~~l~~i~l~i~~G~--~~~ivG~sGsGKSTll~~l~g~~~p~~G~  399 (582)
T 3b5x_A          347 VTFTYQGKEKPALSHVSFSIPQGK--TVALVGRSGSGKSTIANLFTRFYDVDSGS  399 (582)
T ss_pred             EEEEcCCCCccccccceEEECCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCCE
Confidence            3444542  345667777777788  99999999999999999999988776554

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=97.80  E-value=1.1e-05  Score=62.86  Aligned_cols=43  Identities=23%  Similarity=0.284  Sum_probs=30.8

Q ss_pred             CCccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhh
Q 037945          152 GKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNK  196 (206)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~  196 (206)
                      +..||....++++...+..++  +++|+|++|+|||||++.|.+-
T Consensus        27 ~~~y~~~~vl~~vsl~i~~Ge--~~~l~G~NGsGKSTLlk~l~Gl   69 (267)
T 2zu0_C           27 HVSVEDKAILRGLSLDVHPGE--VHAIMGPNGSGKSTLSATLAGR   69 (267)
T ss_dssp             EEEETTEEEEEEEEEEECTTC--EEEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEECCEEEEEeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhCC
Confidence            334443323334444455577  9999999999999999999986

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=97.80  E-value=1.1e-05  Score=62.32  Aligned_cols=34  Identities=32%  Similarity=0.376  Sum_probs=27.7

Q ss_pred             HHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhh
Q 037945          161 ISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNK  196 (206)
Q Consensus       161 ~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~  196 (206)
                      ++++...+..++  +++|+|++|+|||||++.|.+-
T Consensus        19 l~~vsl~i~~Ge--~~~l~G~nGsGKSTLlk~l~Gl   52 (250)
T 2d2e_A           19 LKGVNLVVPKGE--VHALMGPNGAGKSTLGKILAGD   52 (250)
T ss_dssp             EEEEEEEEETTC--EEEEECSTTSSHHHHHHHHHTC
T ss_pred             EeceEEEEcCCC--EEEEECCCCCCHHHHHHHHhCC
Confidence            334444455677  9999999999999999999995

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=97.79  E-value=8.6e-06  Score=66.10  Aligned_cols=40  Identities=30%  Similarity=0.432  Sum_probs=31.6

Q ss_pred             HHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCC
Q 037945          161 ISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEH  202 (206)
Q Consensus       161 ~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~  202 (206)
                      ++++...+..++  +++|+|++|+|||||++.|.+-..+.+|
T Consensus        44 L~~vsl~i~~Ge--i~~IiGpnGaGKSTLlr~i~GL~~p~~G   83 (366)
T 3tui_C           44 LNNVSLHVPAGQ--IYGVIGASGAGKSTLIRCVNLLERPTEG   83 (366)
T ss_dssp             EEEEEEEECTTC--EEEEECCTTSSHHHHHHHHHTSSCCSEE
T ss_pred             EEeeEEEEcCCC--EEEEEcCCCchHHHHHHHHhcCCCCCce
Confidence            344444455677  9999999999999999999998776544

>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}

Probab=97.78  E-value=2.8e-05  Score=64.94  Aligned_cols=47  Identities=26%  Similarity=0.381  Sum_probs=40.6

Q ss_pred             CCCccchHHHH---HHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          151 IGKTVGLDSII---SEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       151 ~~~~~g~~~~~---~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      ...++|.+..+   ..+...+..+....+-++|++|+||||||+.|.+..
T Consensus        25 l~~ivGq~~~~~~~~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~   74 (447)
T 3pvs_A           25 LAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYA   74 (447)
T ss_dssp             TTTCCSCHHHHSTTSHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             HHHhCCcHHHHhchHHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHh
Confidence            45688988877   678888888887889999999999999999999875

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=97.78  E-value=5.9e-06  Score=65.15  Aligned_cols=32  Identities=28%  Similarity=0.467  Sum_probs=26.8

Q ss_pred             hcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCC
Q 037945          169 EDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEH  202 (206)
Q Consensus       169 ~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~  202 (206)
                      ..++  +++|+|++|+|||||++.|.+-..+.+|
T Consensus        62 ~~Ge--~~~i~G~NGsGKSTLlk~l~Gl~~p~~G   93 (290)
T 2bbs_A           62 ERGQ--LLAVAGSTGAGKTSLLMMIMGELEPSEG   93 (290)
T ss_dssp             CTTC--EEEEEESTTSSHHHHHHHHTTSSCEEEE
T ss_pred             cCCC--EEEEECCCCCcHHHHHHHHhcCCCCCCc
Confidence            3466  9999999999999999999987765434

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=97.77  E-value=1.6e-05  Score=64.64  Aligned_cols=37  Identities=35%  Similarity=0.377  Sum_probs=31.7

Q ss_pred             HHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCC
Q 037945          162 SEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDT  200 (206)
Q Consensus       162 ~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~  200 (206)
                      +.+...+..++  .++|+|++|+|||||++.+.+...+.
T Consensus       166 ~~l~~~i~~G~--~i~ivG~sGsGKSTll~~l~~~~~~~  202 (361)
T 2gza_A          166 SFLRRAVQLER--VIVVAGETGSGKTTLMKALMQEIPFD  202 (361)
T ss_dssp             HHHHHHHHTTC--CEEEEESSSSCHHHHHHHHHTTSCTT
T ss_pred             HHHHHHHhcCC--EEEEECCCCCCHHHHHHHHHhcCCCC
Confidence            56666677788  99999999999999999999887654

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=97.77  E-value=9.6e-06  Score=65.79  Aligned_cols=40  Identities=30%  Similarity=0.405  Sum_probs=31.4

Q ss_pred             HHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCC
Q 037945          161 ISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEH  202 (206)
Q Consensus       161 ~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~  202 (206)
                      ++++...+..++  +++|+|++|+|||||++.|.+-..+.+|
T Consensus        19 l~~vsl~i~~Ge--~~~llGpnGsGKSTLLr~iaGl~~p~~G   58 (359)
T 2yyz_A           19 VDGVSFEVKDGE--FVALLGPSGCGKTTTLLMLAGIYKPTSG   58 (359)
T ss_dssp             EEEEEEEECTTC--EEEEECSTTSSHHHHHHHHHTSSCCSEE
T ss_pred             EeeeEEEEcCCC--EEEEEcCCCchHHHHHHHHHCCCCCCcc
Confidence            334444455677  9999999999999999999998776544

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=97.77  E-value=2.1e-05  Score=62.46  Aligned_cols=30  Identities=33%  Similarity=0.582  Sum_probs=25.8

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhhhcCCCC
Q 037945          173 EKVIGLYGMGGVGKTTLLKKLNNKFRDTEH  202 (206)
Q Consensus       173 ~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~  202 (206)
                      ..+|+|+|++|+|||||++.+.+...+.++
T Consensus       102 g~vi~lvG~nGsGKTTll~~Lagll~~~~g  131 (304)
T 1rj9_A          102 GRVVLVVGVNGVGKTTTIAKLGRYYQNLGK  131 (304)
T ss_dssp             SSEEEEECSTTSSHHHHHHHHHHHHHTTTC
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHHHHhcCC
Confidence            349999999999999999999988776533

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=97.77  E-value=1e-05  Score=65.75  Aligned_cols=40  Identities=28%  Similarity=0.458  Sum_probs=31.4

Q ss_pred             HHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCC
Q 037945          161 ISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEH  202 (206)
Q Consensus       161 ~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~  202 (206)
                      ++++...+..++  +++|+|++|+|||||++.|.+-..+.+|
T Consensus        19 l~~vsl~i~~Ge--~~~llGpnGsGKSTLLr~iaGl~~p~~G   58 (362)
T 2it1_A           19 LNNINLKIKDGE--FMALLGPSGSGKSTLLYTIAGIYKPTSG   58 (362)
T ss_dssp             EEEEEEEECTTC--EEEEECCTTSSHHHHHHHHHTSSCCSEE
T ss_pred             EEeeEEEECCCC--EEEEECCCCchHHHHHHHHhcCCCCCce
Confidence            334444455677  9999999999999999999998776544

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=97.76  E-value=1e-05  Score=66.03  Aligned_cols=46  Identities=22%  Similarity=0.229  Sum_probs=34.2

Q ss_pred             cchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCC
Q 037945          155 VGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEH  202 (206)
Q Consensus       155 ~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~  202 (206)
                      ||....++++...+..++  +++|+|++|+|||||++.|.+-..+.+|
T Consensus        13 yg~~~~L~~vsl~i~~Ge--~~~llGpsGsGKSTLLr~iaGl~~p~~G   58 (381)
T 3rlf_A           13 WGEVVVSKDINLDIHEGE--FVVFVGPSGCGKSTLLRMIAGLETITSG   58 (381)
T ss_dssp             ETTEEEEEEEEEEECTTC--EEEEECCTTSSHHHHHHHHHTSSCCSEE
T ss_pred             ECCEEEEeeeEEEECCCC--EEEEEcCCCchHHHHHHHHHcCCCCCCe
Confidence            333333444445556677  9999999999999999999998776544

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=97.76  E-value=1.9e-05  Score=62.90  Aligned_cols=28  Identities=29%  Similarity=0.329  Sum_probs=24.5

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhhhcCC
Q 037945          173 EKVIGLYGMGGVGKTTLLKKLNNKFRDT  200 (206)
Q Consensus       173 ~~vI~IvG~~G~GKTTLa~~i~~~~~~~  200 (206)
                      -.+|+|+|++|+|||||++.|.+-..+.
T Consensus        90 g~ivgI~G~sGsGKSTL~~~L~gll~~~  117 (312)
T 3aez_A           90 PFIIGVAGSVAVGKSTTARVLQALLARW  117 (312)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHHHHTS
T ss_pred             CEEEEEECCCCchHHHHHHHHHhhcccc
Confidence            4599999999999999999999877653

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=97.76  E-value=1.6e-05  Score=63.05  Aligned_cols=29  Identities=38%  Similarity=0.566  Sum_probs=25.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhhhcCCCC
Q 037945          174 KVIGLYGMGGVGKTTLLKKLNNKFRDTEH  202 (206)
Q Consensus       174 ~vI~IvG~~G~GKTTLa~~i~~~~~~~~~  202 (206)
                      .+++|+|++|+|||||++.+.+...+.+|
T Consensus       101 ~vi~lvG~nGsGKTTll~~Lag~l~~~~g  129 (302)
T 3b9q_A          101 AVIMIVGVNGGGKTTSLGKLAHRLKNEGT  129 (302)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHHHHTTC
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHHHHHcCC
Confidence            39999999999999999999988765433

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=97.76  E-value=2.3e-05  Score=62.88  Aligned_cols=41  Identities=27%  Similarity=0.257  Sum_probs=33.8

Q ss_pred             HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCC
Q 037945          160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEH  202 (206)
Q Consensus       160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~  202 (206)
                      ..+.+...+..++  .++|+|++|+|||||++.+.+...+.+|
T Consensus       160 ~l~~l~~~i~~g~--~v~i~G~~GsGKTTll~~l~g~~~~~~g  200 (330)
T 2pt7_A          160 AISAIKDGIAIGK--NVIVCGGTGSGKTTYIKSIMEFIPKEER  200 (330)
T ss_dssp             HHHHHHHHHHHTC--CEEEEESTTSCHHHHHHHGGGGSCTTSC
T ss_pred             HHhhhhhhccCCC--EEEEECCCCCCHHHHHHHHhCCCcCCCc
Confidence            4566677777788  9999999999999999999998766533

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=97.76  E-value=6.5e-06  Score=65.40  Aligned_cols=40  Identities=23%  Similarity=0.332  Sum_probs=30.9

Q ss_pred             HHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCC
Q 037945          161 ISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEH  202 (206)
Q Consensus       161 ~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~  202 (206)
                      ++++...+..++  +++|+|++|+|||||++.|.+...+.+|
T Consensus        70 L~~isl~i~~Ge--~vaivG~sGsGKSTLl~ll~gl~~p~~G  109 (306)
T 3nh6_A           70 LQDVSFTVMPGQ--TLALVGPSGAGKSTILRLLFRFYDISSG  109 (306)
T ss_dssp             EEEEEEEECTTC--EEEEESSSCHHHHHHHHHHTTSSCCSEE
T ss_pred             eeeeeEEEcCCC--EEEEECCCCchHHHHHHHHHcCCCCCCc
Confidence            334444445577  9999999999999999999988766544

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=97.75  E-value=1.1e-05  Score=65.66  Aligned_cols=38  Identities=32%  Similarity=0.361  Sum_probs=30.1

Q ss_pred             HHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCC
Q 037945          163 EVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEH  202 (206)
Q Consensus       163 ~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~  202 (206)
                      ++...+..++  +++|+|++|+|||||++.|.+-..+.+|
T Consensus        29 ~vsl~i~~Ge--~~~llGpnGsGKSTLLr~iaGl~~p~~G   66 (372)
T 1v43_A           29 KLNLTIKDGE--FLVLLGPSGCGKTTTLRMIAGLEEPTEG   66 (372)
T ss_dssp             EEEEEECTTC--EEEEECCTTSSHHHHHHHHHTSSCCSEE
T ss_pred             eeEEEECCCC--EEEEECCCCChHHHHHHHHHcCCCCCce
Confidence            3333444577  9999999999999999999998776544

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=97.75  E-value=2.3e-05  Score=55.52  Aligned_cols=26  Identities=27%  Similarity=0.445  Sum_probs=23.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhhhcC
Q 037945          174 KVIGLYGMGGVGKTTLLKKLNNKFRD  199 (206)
Q Consensus       174 ~vI~IvG~~G~GKTTLa~~i~~~~~~  199 (206)
                      ..+.|+|++|+|||||++.+++...+
T Consensus        37 ~~~~l~G~~G~GKTtL~~~i~~~~~~   62 (149)
T 2kjq_A           37 QFIYVWGEEGAGKSHLLQAWVAQALE   62 (149)
T ss_dssp             SEEEEESSSTTTTCHHHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            38999999999999999999987654

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=97.74  E-value=1.1e-05  Score=65.81  Aligned_cols=39  Identities=26%  Similarity=0.294  Sum_probs=31.0

Q ss_pred             HHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCC
Q 037945          162 SEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEH  202 (206)
Q Consensus       162 ~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~  202 (206)
                      +++...+..++  +++|+|++|+|||||++.|.+-..+.+|
T Consensus        20 ~~vsl~i~~Ge--~~~llGpnGsGKSTLLr~iaGl~~p~~G   58 (372)
T 1g29_1           20 REMSLEVKDGE--FMILLGPSGCGKTTTLRMIAGLEEPSRG   58 (372)
T ss_dssp             EEEEEEEETTC--EEEEECSTTSSHHHHHHHHHTSSCCSEE
T ss_pred             eeeEEEEcCCC--EEEEECCCCcHHHHHHHHHHcCCCCCcc
Confidence            33444455677  9999999999999999999998776544

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=97.74  E-value=1.4e-05  Score=62.04  Aligned_cols=32  Identities=28%  Similarity=0.333  Sum_probs=26.5

Q ss_pred             HhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcC
Q 037945          166 RCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRD  199 (206)
Q Consensus       166 ~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~  199 (206)
                      ..+..++  +++|+|++|+|||||++.|.+-..+
T Consensus        41 l~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~   72 (260)
T 2ghi_A           41 FFIPSGT--TCALVGHTGSGKSTIAKLLYRFYDA   72 (260)
T ss_dssp             EEECTTC--EEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred             EEECCCC--EEEEECCCCCCHHHHHHHHhccCCC
Confidence            3344567  9999999999999999999987654

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=97.73  E-value=4.2e-05  Score=53.78  Aligned_cols=44  Identities=23%  Similarity=0.334  Sum_probs=32.9

Q ss_pred             ccchHHHHHHHHHhhhc--CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          154 TVGLDSIISEVWRCIED--HNEKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       154 ~~g~~~~~~~l~~~L~~--~~~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      ++|....+.++...+..  ....-|-|+|++|+|||+||+.|++..
T Consensus         3 iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~   48 (145)
T 3n70_A            3 LIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFG   48 (145)
T ss_dssp             -CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred             ceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhC
Confidence            57777777777776643  222257799999999999999998764

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=97.72  E-value=1.2e-05  Score=62.43  Aligned_cols=35  Identities=23%  Similarity=0.316  Sum_probs=28.3

Q ss_pred             HHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCC
Q 037945          164 VWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEH  202 (206)
Q Consensus       164 l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~  202 (206)
                      +...+. ++  +++|+|++|+|||||++.+.+-. +.+|
T Consensus        24 vsl~i~-Ge--~~~i~G~NGsGKSTLlk~l~Gl~-p~~G   58 (263)
T 2pjz_A           24 INLEVN-GE--KVIILGPNGSGKTTLLRAISGLL-PYSG   58 (263)
T ss_dssp             EEEEEC-SS--EEEEECCTTSSHHHHHHHHTTSS-CCEE
T ss_pred             eeEEEC-CE--EEEEECCCCCCHHHHHHHHhCCC-CCCc
Confidence            334455 66  99999999999999999999877 6544

>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}

Probab=97.71  E-value=5.1e-05  Score=63.78  Aligned_cols=47  Identities=23%  Similarity=0.355  Sum_probs=40.1

Q ss_pred             CCCccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          151 IGKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       151 ~~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      ...++|++..+..+...|......-+-++|++|+||||||+.+....
T Consensus       179 ld~iiGr~~~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l  225 (468)
T 3pxg_A          179 LDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQI  225 (468)
T ss_dssp             SCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred             CCCccCcHHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHH
Confidence            45689999999999999976544567899999999999999998875

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=97.70  E-value=7.7e-06  Score=66.25  Aligned_cols=40  Identities=25%  Similarity=0.356  Sum_probs=31.8

Q ss_pred             HHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCC
Q 037945          161 ISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEH  202 (206)
Q Consensus       161 ~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~  202 (206)
                      ++++...+..++  +++|+|++|+|||||++.|.+-..+.+|
T Consensus        21 l~~vsl~i~~Ge--~~~llGpnGsGKSTLLr~iaGl~~p~~G   60 (353)
T 1oxx_K           21 LDNVNINIENGE--RFGILGPSGAGKTTFMRIIAGLDVPSTG   60 (353)
T ss_dssp             EEEEEEEECTTC--EEEEECSCHHHHHHHHHHHHTSSCCSEE
T ss_pred             EeceEEEECCCC--EEEEECCCCCcHHHHHHHHhCCCCCCce
Confidence            344444556677  9999999999999999999998776544

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=97.69  E-value=2.3e-05  Score=67.85  Aligned_cols=34  Identities=38%  Similarity=0.571  Sum_probs=29.7

Q ss_pred             hcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCCC
Q 037945          169 EDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHDF  204 (206)
Q Consensus       169 ~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~F  204 (206)
                      ..++  +++|+|+||+|||||++.|.+...+.+|.+
T Consensus       101 ~~Ge--i~~LvGpNGaGKSTLLkiL~Gll~P~~G~i  134 (608)
T 3j16_B          101 RPGQ--VLGLVGTNGIGKSTALKILAGKQKPNLGRF  134 (608)
T ss_dssp             CTTS--EEEEECCTTSSHHHHHHHHHTSSCCCTTTT
T ss_pred             CCCC--EEEEECCCCChHHHHHHHHhcCCCCCCceE
Confidence            3466  999999999999999999999888876765

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=97.69  E-value=3.5e-05  Score=63.63  Aligned_cols=30  Identities=20%  Similarity=0.306  Sum_probs=25.1

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhhhcCCCC
Q 037945          173 EKVIGLYGMGGVGKTTLLKKLNNKFRDTEH  202 (206)
Q Consensus       173 ~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~  202 (206)
                      ..+++|+|++|+|||||++.+.+...+.+|
T Consensus        69 ~~~valvG~nGaGKSTLln~L~Gl~~p~~G   98 (413)
T 1tq4_A           69 VLNVAVTGETGSGKSSFINTLRGIGNEEEG   98 (413)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHTCCTTSTT
T ss_pred             CeEEEEECCCCCcHHHHHHHHhCCCCccCc
Confidence            349999999999999999999996655434

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=97.68  E-value=5e-05  Score=60.29  Aligned_cols=27  Identities=26%  Similarity=0.309  Sum_probs=23.8

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945          172 NEKVIGLYGMGGVGKTTLLKKLNNKFR  198 (206)
Q Consensus       172 ~~~vI~IvG~~G~GKTTLa~~i~~~~~  198 (206)
                      .-.+|+|+|++|+|||||++.+.+...
T Consensus        79 ~g~iigI~G~~GsGKSTl~~~L~~~l~  105 (308)
T 1sq5_A           79 IPYIISIAGSVAVGKSTTARVLQALLS  105 (308)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence            345999999999999999999998765

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=97.68  E-value=5.2e-05  Score=59.11  Aligned_cols=46  Identities=33%  Similarity=0.402  Sum_probs=37.1

Q ss_pred             CCccchHHHHHHHHHhhhc-------------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          152 GKTVGLDSIISEVWRCIED-------------HNEKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~-------------~~~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      ..++|.+..++.|...+..             ....-+-|+|++|+||||||+.+++..
T Consensus        17 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~   75 (285)
T 3h4m_A           17 EDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATET   75 (285)
T ss_dssp             GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred             HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence            4588999888888777642             234579999999999999999998865

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=97.67  E-value=2.4e-05  Score=66.84  Aligned_cols=35  Identities=26%  Similarity=0.438  Sum_probs=29.5

Q ss_pred             hhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          167 CIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       167 ~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      .+..++  +++|+|+||+|||||++.|.+...+.+|.
T Consensus        43 ~i~~Ge--~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~   77 (538)
T 1yqt_A           43 VVKEGM--VVGIVGPNGTGKSTAVKILAGQLIPNLCG   77 (538)
T ss_dssp             CCCTTS--EEEEECCTTSSHHHHHHHHHTSSCCCTTT
T ss_pred             cCCCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCCc
Confidence            455677  99999999999999999999987766554

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=97.67  E-value=2.9e-05  Score=57.59  Aligned_cols=24  Identities=25%  Similarity=0.515  Sum_probs=21.5

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhh
Q 037945          173 EKVIGLYGMGGVGKTTLLKKLNNK  196 (206)
Q Consensus       173 ~~vI~IvG~~G~GKTTLa~~i~~~  196 (206)
                      -.+|+|+|++|+|||||++.+.+.
T Consensus        29 g~~i~l~G~~GsGKSTl~~~L~~~   52 (200)
T 4eun_A           29 TRHVVVMGVSGSGKTTIAHGVADE   52 (200)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHh
Confidence            349999999999999999999765

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=97.67  E-value=2.7e-05  Score=66.60  Aligned_cols=32  Identities=41%  Similarity=0.561  Sum_probs=27.8

Q ss_pred             cCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          170 DHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       170 ~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      .++  +++|+|++|+|||||++.|++...+.+|.
T Consensus       311 ~Ge--~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~  342 (538)
T 1yqt_A          311 KGE--VIGIVGPNGIGKTTFVKMLAGVEEPTEGK  342 (538)
T ss_dssp             TTC--EEEEECCTTSSHHHHHHHHHTSSCCSBCC
T ss_pred             CCC--EEEEECCCCCCHHHHHHHHhCCCCCCCeE
Confidence            356  99999999999999999999988776564

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=97.66  E-value=2.4e-05  Score=64.69  Aligned_cols=42  Identities=24%  Similarity=0.127  Sum_probs=31.6

Q ss_pred             ccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhh
Q 037945          154 TVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNK  196 (206)
Q Consensus       154 ~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~  196 (206)
                      .||... ++++...+..+..--++|+|++|+|||||++.+++.
T Consensus        24 ~y~~~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~   65 (427)
T 2qag_B           24 GFDSLP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNT   65 (427)
T ss_dssp             -CC--C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred             EECCee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCc
Confidence            445434 788888888888222999999999999999999875

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=97.66  E-value=2.7e-05  Score=63.11  Aligned_cols=27  Identities=41%  Similarity=0.621  Sum_probs=24.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhhhcCC
Q 037945          174 KVIGLYGMGGVGKTTLLKKLNNKFRDT  200 (206)
Q Consensus       174 ~vI~IvG~~G~GKTTLa~~i~~~~~~~  200 (206)
                      .+|+|+|++|+|||||++.+.+...+.
T Consensus       158 ~vi~lvG~nGsGKTTll~~Lag~l~~~  184 (359)
T 2og2_A          158 AVIMIVGVNGGGKTTSLGKLAHRLKNE  184 (359)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred             eEEEEEcCCCChHHHHHHHHHhhcccc
Confidence            499999999999999999999877654

>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A

Probab=97.65  E-value=4.7e-05  Score=60.08  Aligned_cols=46  Identities=26%  Similarity=0.340  Sum_probs=39.8

Q ss_pred             CCccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          152 GKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      ..++|.+..++.+..++..+....+-++|++|+||||+++.+.+..
T Consensus        17 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l   62 (319)
T 2chq_A           17 DEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDL   62 (319)
T ss_dssp             GGSCSCHHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHH
T ss_pred             HHHhCCHHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHh
Confidence            4588999999999999888766569999999999999999998764

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=97.65  E-value=2.9e-05  Score=67.30  Aligned_cols=33  Identities=39%  Similarity=0.545  Sum_probs=28.2

Q ss_pred             cCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCCC
Q 037945          170 DHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHDF  204 (206)
Q Consensus       170 ~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~F  204 (206)
                      .++  +++|+|+||+|||||++.|.+...+.+|..
T Consensus       381 ~Ge--i~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I  413 (607)
T 3bk7_A          381 KGE--VIGIVGPNGIGKTTFVKMLAGVEEPTEGKV  413 (607)
T ss_dssp             TTC--EEEEECCTTSSHHHHHHHHHTSSCCSBSCC
T ss_pred             CCC--EEEEECCCCCCHHHHHHHHhcCCCCCceEE
Confidence            356  999999999999999999999887765643

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=97.64  E-value=2.9e-05  Score=62.50  Aligned_cols=40  Identities=25%  Similarity=0.392  Sum_probs=28.9

Q ss_pred             HHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcC
Q 037945          158 DSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRD  199 (206)
Q Consensus       158 ~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~  199 (206)
                      ...++++...+..+.  +++|+|++|+|||||++.+.+...+
T Consensus        42 ~~~l~~i~~~~~~g~--~v~i~G~~GaGKSTLl~~l~g~~~~   81 (337)
T 2qm8_A           42 RDLIDAVLPQTGRAI--RVGITGVPGVGKSTTIDALGSLLTA   81 (337)
T ss_dssp             HHHHHHHGGGCCCSE--EEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCcccCCCe--EEEEECCCCCCHHHHHHHHHHhhhh
Confidence            334445544333444  9999999999999999999876543

>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*

Probab=97.64  E-value=9.1e-05  Score=59.80  Aligned_cols=47  Identities=19%  Similarity=0.309  Sum_probs=39.9

Q ss_pred             CCccchHHHHHHHHHhhhcCCC-eEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945          152 GKTVGLDSIISEVWRCIEDHNE-KVIGLYGMGGVGKTTLLKKLNNKFR  198 (206)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~~~~-~vI~IvG~~G~GKTTLa~~i~~~~~  198 (206)
                      ..++|++..++.+...+..+.. +.+-|+|+.|+|||||++.+.+...
T Consensus        16 ~~~vg~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l~   63 (373)
T 1jr3_A           16 ADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN   63 (373)
T ss_dssp             TTSCSCHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHHS
T ss_pred             hhccCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence            4589999999999999887653 4688999999999999999987653

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=97.62  E-value=3.9e-05  Score=61.51  Aligned_cols=29  Identities=38%  Similarity=0.540  Sum_probs=25.3

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhhhcCC
Q 037945          172 NEKVIGLYGMGGVGKTTLLKKLNNKFRDT  200 (206)
Q Consensus       172 ~~~vI~IvG~~G~GKTTLa~~i~~~~~~~  200 (206)
                      ...+|+|+|++|+|||||++.+.+...+.
T Consensus       128 ~g~vi~lvG~nGaGKTTll~~Lag~l~~~  156 (328)
T 3e70_C          128 KPYVIMFVGFNGSGKTTTIAKLANWLKNH  156 (328)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence            35699999999999999999999877654

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=97.61  E-value=8.1e-05  Score=62.63  Aligned_cols=28  Identities=43%  Similarity=0.616  Sum_probs=24.5

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhhhcCC
Q 037945          173 EKVIGLYGMGGVGKTTLLKKLNNKFRDT  200 (206)
Q Consensus       173 ~~vI~IvG~~G~GKTTLa~~i~~~~~~~  200 (206)
                      -.+|+|+|++|+|||||++.|.+...+.
T Consensus       293 GeVI~LVGpNGSGKTTLl~~LAgll~~~  320 (503)
T 2yhs_A          293 PFVILMVGVNGVGKTTTIGKLARQFEQQ  320 (503)
T ss_dssp             TEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred             CeEEEEECCCcccHHHHHHHHHHHhhhc
Confidence            3599999999999999999999876554

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=97.61  E-value=2.8e-05  Score=66.43  Aligned_cols=32  Identities=31%  Similarity=0.582  Sum_probs=27.7

Q ss_pred             cCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          170 DHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       170 ~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      .++  +++|+|++|+|||||++.|++-..+.+|.
T Consensus       293 ~Ge--i~~i~G~nGsGKSTLl~~l~Gl~~p~~G~  324 (538)
T 3ozx_A          293 EGE--IIGILGPNGIGKTTFARILVGEITADEGS  324 (538)
T ss_dssp             TTC--EEEEECCTTSSHHHHHHHHTTSSCCSBCC
T ss_pred             CCC--EEEEECCCCCCHHHHHHHHhCCCCCCCcE
Confidence            355  99999999999999999999988776554

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=97.61  E-value=9.2e-05  Score=58.49  Aligned_cols=46  Identities=28%  Similarity=0.392  Sum_probs=35.7

Q ss_pred             CCccchHHHHHHHHHhhhc-------------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          152 GKTVGLDSIISEVWRCIED-------------HNEKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~-------------~~~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      ..++|.+..++.|...+..             ...+.|.++|++|+||||||+.+++..
T Consensus        15 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~   73 (301)
T 3cf0_A           15 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC   73 (301)
T ss_dssp             GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred             HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHh
Confidence            4578888877777666532             234579999999999999999999865

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=97.60  E-value=4.3e-05  Score=58.47  Aligned_cols=22  Identities=23%  Similarity=0.277  Sum_probs=20.5

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHH
Q 037945          173 EKVIGLYGMGGVGKTTLLKKLN  194 (206)
Q Consensus       173 ~~vI~IvG~~G~GKTTLa~~i~  194 (206)
                      ..+|+|+|++|+|||||++.+.
T Consensus        27 ~~~i~l~G~~GsGKSTl~k~La   48 (246)
T 2bbw_A           27 LLRAVILGPPGSGKGTVCQRIA   48 (246)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHH
Confidence            3499999999999999999998

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=97.60  E-value=8e-05  Score=59.46  Aligned_cols=44  Identities=20%  Similarity=0.209  Sum_probs=30.9

Q ss_pred             cchHHHHHHHHHhhhc----CCCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945          155 VGLDSIISEVWRCIED----HNEKVIGLYGMGGVGKTTLLKKLNNKFR  198 (206)
Q Consensus       155 ~g~~~~~~~l~~~L~~----~~~~vI~IvG~~G~GKTTLa~~i~~~~~  198 (206)
                      +|....+..+...+..    +...+|+|.|++|+|||||++.+..-..
T Consensus        70 ~~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~  117 (321)
T 3tqc_A           70 VTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLS  117 (321)
T ss_dssp             HHHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             hcchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence            4444444444444443    2356999999999999999999987654

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=97.59  E-value=3.3e-05  Score=66.91  Aligned_cols=35  Identities=31%  Similarity=0.481  Sum_probs=29.7

Q ss_pred             hhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          167 CIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       167 ~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      .+..++  +++|+|+||+|||||++.|.+...+.+|.
T Consensus       113 ~i~~Ge--~~~LiG~NGsGKSTLlkiL~Gll~p~~G~  147 (607)
T 3bk7_A          113 IVKDGM--VVGIVGPNGTGKTTAVKILAGQLIPNLCE  147 (607)
T ss_dssp             CCCTTS--EEEEECCTTSSHHHHHHHHTTSSCCCTTT
T ss_pred             CCCCCC--EEEEECCCCChHHHHHHHHhCCCCCCCCc
Confidence            455677  99999999999999999999988776554

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=97.57  E-value=6e-05  Score=63.36  Aligned_cols=30  Identities=23%  Similarity=0.195  Sum_probs=26.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          174 KVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       174 ~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      .+++|+|++|+|||||++.|.+-..+.+|.
T Consensus        30 e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~   59 (483)
T 3euj_A           30 LVTTLSGGNGAGKSTTMAGFVTALIPDLTL   59 (483)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHHHCCCTTT
T ss_pred             ceEEEECCCCCcHHHHHHHHhcCCCCCCCE
Confidence            499999999999999999999988776564

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=97.57  E-value=0.00011  Score=57.62  Aligned_cols=46  Identities=22%  Similarity=0.227  Sum_probs=36.5

Q ss_pred             CCccchHHHHHHHHHhhhc------------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          152 GKTVGLDSIISEVWRCIED------------HNEKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~------------~~~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      ..++|.+..++.+...+..            ...+-+.++|++|+||||||+.+.+..
T Consensus        21 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~   78 (297)
T 3b9p_A           21 TDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATEC   78 (297)
T ss_dssp             GGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred             HHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHh
Confidence            4588988888888776632            124588999999999999999998865

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=97.57  E-value=5.2e-05  Score=59.76  Aligned_cols=46  Identities=33%  Similarity=0.356  Sum_probs=36.4

Q ss_pred             CccchHHHHHHHHHhhhcC---------CCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945          153 KTVGLDSIISEVWRCIEDH---------NEKVIGLYGMGGVGKTTLLKKLNNKFR  198 (206)
Q Consensus       153 ~~~g~~~~~~~l~~~L~~~---------~~~vI~IvG~~G~GKTTLa~~i~~~~~  198 (206)
                      .++|.+..++.+...+...         ....+.++|++|+||||||+.+.+...
T Consensus        18 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~   72 (311)
T 4fcw_A           18 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLF   72 (311)
T ss_dssp             TCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHH
T ss_pred             hcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHc
Confidence            3678888888877777642         134899999999999999999988653

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=97.56  E-value=1.8e-05  Score=60.03  Aligned_cols=28  Identities=29%  Similarity=0.248  Sum_probs=18.1

Q ss_pred             hhcCCCeEEEEEcCCCCcHHHHHHHHH-hhh
Q 037945          168 IEDHNEKVIGLYGMGGVGKTTLLKKLN-NKF  197 (206)
Q Consensus       168 L~~~~~~vI~IvG~~G~GKTTLa~~i~-~~~  197 (206)
                      +..+.  +|+|+|++|+|||||++.+. +..
T Consensus        24 v~~G~--ii~l~Gp~GsGKSTl~~~L~~~~~   52 (231)
T 3lnc_A           24 KSVGV--ILVLSSPSGCGKTTVANKLLEKQK   52 (231)
T ss_dssp             EECCC--EEEEECSCC----CHHHHHHC---
T ss_pred             cCCCC--EEEEECCCCCCHHHHHHHHHhcCC
Confidence            34455  99999999999999999999 654

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=97.55  E-value=0.00015  Score=55.60  Aligned_cols=46  Identities=26%  Similarity=0.285  Sum_probs=33.7

Q ss_pred             CCccchHHHHHHHHHhhh---c---------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          152 GKTVGLDSIISEVWRCIE---D---------HNEKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~---~---------~~~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      ..++|.+..++.+...+.   .         ....-|-++|++|+||||||+.+++..
T Consensus         6 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~   63 (262)
T 2qz4_A            6 KDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEA   63 (262)
T ss_dssp             TSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred             HHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence            457888777666655432   2         123467899999999999999998865

>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.55  E-value=0.00011  Score=62.42  Aligned_cols=46  Identities=20%  Similarity=0.292  Sum_probs=38.8

Q ss_pred             CCccchHHHHHHHHHhhhc-----------------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          152 GKTVGLDSIISEVWRCIED-----------------HNEKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~-----------------~~~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      ..++|.+..++.+..++..                 +..+.+-|+|++|+||||||+.+.+..
T Consensus        39 ~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l  101 (516)
T 1sxj_A           39 QQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQEL  101 (516)
T ss_dssp             GGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             HHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence            4588999999999988875                 124689999999999999999998765

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=97.55  E-value=0.00012  Score=55.06  Aligned_cols=41  Identities=20%  Similarity=0.274  Sum_probs=32.3

Q ss_pred             HHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945          158 DSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFR  198 (206)
Q Consensus       158 ~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~  198 (206)
                      +..+..+..++..+....+.|+|++|+|||||++.+++...
T Consensus        37 ~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~   77 (242)
T 3bos_A           37 DELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARAN   77 (242)
T ss_dssp             HHHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence            45666666666655556899999999999999999987653

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=97.54  E-value=4.7e-05  Score=59.91  Aligned_cols=39  Identities=18%  Similarity=0.205  Sum_probs=31.9

Q ss_pred             HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCC
Q 037945          160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDT  200 (206)
Q Consensus       160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~  200 (206)
                      .++++..-+..++  +++|+|++|+|||||++.+.....+.
T Consensus        24 ~Ld~i~~~l~~G~--~~~i~G~~G~GKTTl~~~ia~~~~~~   62 (296)
T 1cr0_A           24 GINDKTLGARGGE--VIMVTSGSGMGKSTFVRQQALQWGTA   62 (296)
T ss_dssp             THHHHHCSBCTTC--EEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred             HHHHHhcCCCCCe--EEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence            4566665666788  99999999999999999998876543

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=97.53  E-value=3.7e-05  Score=64.39  Aligned_cols=38  Identities=16%  Similarity=0.092  Sum_probs=30.0

Q ss_pred             HHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCC
Q 037945          163 EVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEH  202 (206)
Q Consensus       163 ~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~  202 (206)
                      ++...+..++  +++|+|++|+|||||++.+.+-..+.+|
T Consensus       130 ~vsl~i~~Ge--~v~IvGpnGsGKSTLlr~L~Gl~~p~~G  167 (460)
T 2npi_A          130 KIRMSNFEGP--RVVIVGGSQTGKTSLSRTLCSYALKFNA  167 (460)
T ss_dssp             HHHHHSSSCC--CEEEEESTTSSHHHHHHHHHHTTHHHHC
T ss_pred             cCceEeCCCC--EEEEECCCCCCHHHHHHHHhCcccccCC
Confidence            4555555677  9999999999999999999987654433

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=97.53  E-value=0.00014  Score=57.33  Aligned_cols=44  Identities=20%  Similarity=0.341  Sum_probs=32.6

Q ss_pred             ccchHHHHHHHHHhhh---------------cCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          154 TVGLDSIISEVWRCIE---------------DHNEKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       154 ~~g~~~~~~~l~~~L~---------------~~~~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      ++|.+..++.|...+.               .....-+-++|++|+||||||+.+.+..
T Consensus        33 i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l   91 (309)
T 3syl_A           33 LIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLL   91 (309)
T ss_dssp             SSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             ccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence            6787777666665443               2234468999999999999999887664

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=97.51  E-value=0.00013  Score=58.33  Aligned_cols=46  Identities=26%  Similarity=0.296  Sum_probs=37.7

Q ss_pred             CCccchHHHHHHHHHhhhc-----CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          152 GKTVGLDSIISEVWRCIED-----HNEKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~-----~~~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      ..++|.+..++.+..++..     .....+-|+|++|+||||||+.+.+..
T Consensus        29 ~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~   79 (338)
T 3pfi_A           29 DGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEM   79 (338)
T ss_dssp             GGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHT
T ss_pred             HHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHh
Confidence            4589999888888887764     334578999999999999999998764

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=97.51  E-value=0.00014  Score=56.79  Aligned_cols=47  Identities=28%  Similarity=0.243  Sum_probs=32.1

Q ss_pred             CCccchHHHHHHHHHhhh----c---------CCCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945          152 GKTVGLDSIISEVWRCIE----D---------HNEKVIGLYGMGGVGKTTLLKKLNNKFR  198 (206)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~----~---------~~~~vI~IvG~~G~GKTTLa~~i~~~~~  198 (206)
                      ..+.|.+..++.|...+.    .         .-.+=+.++|++|+|||||++.|.+...
T Consensus        10 ~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~   69 (274)
T 2x8a_A           10 ADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESG   69 (274)
T ss_dssp             --CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTT
T ss_pred             HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcC
Confidence            346677777766655432    1         0112399999999999999999998754

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=97.51  E-value=0.00013  Score=55.97  Aligned_cols=47  Identities=26%  Similarity=0.317  Sum_probs=33.3

Q ss_pred             CCccchHHHHHHHHHh---hhc---------CCCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945          152 GKTVGLDSIISEVWRC---IED---------HNEKVIGLYGMGGVGKTTLLKKLNNKFR  198 (206)
Q Consensus       152 ~~~~g~~~~~~~l~~~---L~~---------~~~~vI~IvG~~G~GKTTLa~~i~~~~~  198 (206)
                      ..++|.+..++.+...   +..         .-.+-+.|+|++|+|||||++.+.+...
T Consensus        12 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~   70 (257)
T 1lv7_A           12 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAK   70 (257)
T ss_dssp             GGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             HHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcC
Confidence            4578887766655443   322         1123588999999999999999988753

>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}

Probab=97.48  E-value=8.5e-05  Score=59.21  Aligned_cols=45  Identities=11%  Similarity=0.094  Sum_probs=38.3

Q ss_pred             ccchHHHHHHHHHhhhc----CCCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945          154 TVGLDSIISEVWRCIED----HNEKVIGLYGMGGVGKTTLLKKLNNKFR  198 (206)
Q Consensus       154 ~~g~~~~~~~l~~~L~~----~~~~vI~IvG~~G~GKTTLa~~i~~~~~  198 (206)
                      ..+|+.+++.|...|..    +....+-|+|++|+|||++++.|.+...
T Consensus        22 L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~   70 (318)
T 3te6_A           22 LKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELI   70 (318)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence            67899999988877764    5666899999999999999999998764

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=97.47  E-value=0.00018  Score=56.63  Aligned_cols=28  Identities=21%  Similarity=0.183  Sum_probs=23.8

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945          171 HNEKVIGLYGMGGVGKTTLLKKLNNKFR  198 (206)
Q Consensus       171 ~~~~vI~IvG~~G~GKTTLa~~i~~~~~  198 (206)
                      +...+|+|+|+.|+|||||++.+.....
T Consensus        29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~   56 (290)
T 1odf_A           29 KCPLFIFFSGPQGSGKSFTSIQIYNHLM   56 (290)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhh
Confidence            4456999999999999999999877653

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=97.47  E-value=0.00013  Score=61.98  Aligned_cols=40  Identities=23%  Similarity=0.288  Sum_probs=32.1

Q ss_pred             HHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCC
Q 037945          159 SIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDT  200 (206)
Q Consensus       159 ~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~  200 (206)
                      ..++.+...+..+.  .|+|+|++|+|||||++.+.+...+.
T Consensus       248 ~~l~~l~~~v~~g~--~i~I~GptGSGKTTlL~aL~~~i~~~  287 (511)
T 2oap_1          248 GVLAYLWLAIEHKF--SAIVVGETASGKTTTLNAIMMFIPPD  287 (511)
T ss_dssp             HHHHHHHHHHHTTC--CEEEEESTTSSHHHHHHHHGGGSCTT
T ss_pred             HHHHHHHHHHhCCC--EEEEECCCCCCHHHHHHHHHhhCCCC
Confidence            34556666666677  79999999999999999999877654

>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*

Probab=97.47  E-value=0.00011  Score=58.28  Aligned_cols=46  Identities=22%  Similarity=0.390  Sum_probs=36.8

Q ss_pred             CCccchHHHHHHHHHhhhc-----CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          152 GKTVGLDSIISEVWRCIED-----HNEKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~-----~~~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      ..++|.+..+..+...+..     .....+-|+|++|+||||||+.+++..
T Consensus        12 ~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~   62 (324)
T 1hqc_A           12 DEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHEL   62 (324)
T ss_dssp             TTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHH
T ss_pred             HHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHh
Confidence            5588998888877777652     233578899999999999999998765

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=97.46  E-value=0.00016  Score=53.33  Aligned_cols=40  Identities=33%  Similarity=0.321  Sum_probs=30.0

Q ss_pred             HHHHHHHHhhhcC----CCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945          159 SIISEVWRCIEDH----NEKVIGLYGMGGVGKTTLLKKLNNKFR  198 (206)
Q Consensus       159 ~~~~~l~~~L~~~----~~~vI~IvG~~G~GKTTLa~~i~~~~~  198 (206)
                      ..++.+..++...    ....+-|+|++|+|||||++.+++...
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~   79 (202)
T 2w58_A           36 KAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELA   79 (202)
T ss_dssp             HHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence            3555556666543    115899999999999999999998764

>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}

Probab=97.46  E-value=0.00013  Score=63.24  Aligned_cols=45  Identities=16%  Similarity=0.283  Sum_probs=40.3

Q ss_pred             CCccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945          152 GKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFR  198 (206)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~  198 (206)
                      ..++|.+..++.+...+..+.  .+.|+|++|+||||||+.|.+...
T Consensus        41 ~~i~G~~~~l~~l~~~i~~g~--~vll~Gp~GtGKTtlar~ia~~l~   85 (604)
T 3k1j_A           41 DQVIGQEHAVEVIKTAANQKR--HVLLIGEPGTGKSMLGQAMAELLP   85 (604)
T ss_dssp             HHCCSCHHHHHHHHHHHHTTC--CEEEECCTTSSHHHHHHHHHHTSC
T ss_pred             ceEECchhhHhhccccccCCC--EEEEEeCCCCCHHHHHHHHhccCC
Confidence            458899999999999998887  999999999999999999998764

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=97.45  E-value=8.1e-05  Score=57.32  Aligned_cols=21  Identities=48%  Similarity=0.575  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHH
Q 037945          174 KVIGLYGMGGVGKTTLLKKLN  194 (206)
Q Consensus       174 ~vI~IvG~~G~GKTTLa~~i~  194 (206)
                      .+|+|+|++|+|||||++.+.
T Consensus        28 ~~I~I~G~~GsGKSTl~k~La   48 (252)
T 4e22_A           28 PVITVDGPSGAGKGTLCKALA   48 (252)
T ss_dssp             CEEEEECCTTSSHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHH
Confidence            399999999999999999998

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=97.45  E-value=0.00018  Score=56.48  Aligned_cols=46  Identities=24%  Similarity=0.296  Sum_probs=36.0

Q ss_pred             CCccchHHHHHHHHHhhhc--------------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          152 GKTVGLDSIISEVWRCIED--------------HNEKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~--------------~~~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      ..++|.+..++.+...+..              ....-+-++|++|+||||||+.+.+..
T Consensus        15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l   74 (310)
T 1ofh_A           15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA   74 (310)
T ss_dssp             TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred             hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence            3478988888887776643              223468899999999999999998765

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=97.44  E-value=4.6e-05  Score=65.73  Aligned_cols=40  Identities=20%  Similarity=0.292  Sum_probs=31.1

Q ss_pred             HHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCC
Q 037945          161 ISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEH  202 (206)
Q Consensus       161 ~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~  202 (206)
                      ++++...+..++  +++|+|++|+|||||++.+.+..++.+|
T Consensus       359 l~~v~~~i~~G~--~~~ivG~sGsGKSTLl~~l~g~~~p~~G  398 (582)
T 3b60_A          359 LRNINLKIPAGK--TVALVGRSGSGKSTIASLITRFYDIDEG  398 (582)
T ss_dssp             EEEEEEEECTTC--EEEEEECTTSSHHHHHHHHTTTTCCSEE
T ss_pred             ccceeEEEcCCC--EEEEECCCCCCHHHHHHHHhhccCCCCC
Confidence            334444444577  9999999999999999999998776544

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=97.44  E-value=0.00014  Score=65.56  Aligned_cols=47  Identities=26%  Similarity=0.391  Sum_probs=40.6

Q ss_pred             CCCccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          151 IGKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       151 ~~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      ...++|++..+..++..|......-+.++|++|+|||||++.+.+..
T Consensus       169 ld~viGr~~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~l  215 (854)
T 1qvr_A          169 LDPVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRI  215 (854)
T ss_dssp             SCCCCSCHHHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHH
T ss_pred             CcccCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHH
Confidence            45689999999999999887655567899999999999999998765

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=97.44  E-value=8.1e-05  Score=64.45  Aligned_cols=29  Identities=34%  Similarity=0.582  Sum_probs=25.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhhhcCCCC
Q 037945          174 KVIGLYGMGGVGKTTLLKKLNNKFRDTEH  202 (206)
Q Consensus       174 ~vI~IvG~~G~GKTTLa~~i~~~~~~~~~  202 (206)
                      .+++|+|++|+|||||++.|.+-..+.+|
T Consensus       379 Eiv~iiG~NGsGKSTLlk~l~Gl~~p~~G  407 (608)
T 3j16_B          379 EILVMMGENGTGKTTLIKLLAGALKPDEG  407 (608)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHTSSCCSBC
T ss_pred             eEEEEECCCCCcHHHHHHHHhcCCCCCCC
Confidence            38999999999999999999998877655

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=97.42  E-value=7e-05  Score=61.38  Aligned_cols=37  Identities=30%  Similarity=0.447  Sum_probs=29.1

Q ss_pred             HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945          160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFR  198 (206)
Q Consensus       160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~  198 (206)
                      .++++...+..++  +++|+|++|+|||||++.|.+-..
T Consensus        36 ~L~~vsl~i~~Ge--~~~llGpsGsGKSTLLr~iaGl~~   72 (390)
T 3gd7_A           36 ILENISFSISPGQ--RVGLLGRTGSGKSTLLSAFLRLLN   72 (390)
T ss_dssp             SEEEEEEEECTTC--EEEEEESTTSSHHHHHHHHHTCSE
T ss_pred             EeeceeEEEcCCC--EEEEECCCCChHHHHHHHHhCCCC
Confidence            3444444555677  999999999999999999998654

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=97.42  E-value=0.00022  Score=58.95  Aligned_cols=29  Identities=28%  Similarity=0.314  Sum_probs=25.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhhhcCCCC
Q 037945          174 KVIGLYGMGGVGKTTLLKKLNNKFRDTEH  202 (206)
Q Consensus       174 ~vI~IvG~~G~GKTTLa~~i~~~~~~~~~  202 (206)
                      .+|+|+|++|+|||||++.+.+...+.++
T Consensus       168 gii~I~GpnGSGKTTlL~allg~l~~~~g  196 (418)
T 1p9r_A          168 GIILVTGPTGSGKSTTLYAGLQELNSSER  196 (418)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHHHHCCTTS
T ss_pred             CeEEEECCCCCCHHHHHHHHHhhcCCCCC
Confidence            49999999999999999999988765434

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=97.41  E-value=0.00023  Score=57.55  Aligned_cols=46  Identities=22%  Similarity=0.200  Sum_probs=36.7

Q ss_pred             CCccchHHHHHHHHHhhhc------------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          152 GKTVGLDSIISEVWRCIED------------HNEKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~------------~~~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      ..++|.+..++.|...+..            ...+-|-|+|++|+||||||+.+.+..
T Consensus        84 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~  141 (357)
T 3d8b_A           84 EDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQS  141 (357)
T ss_dssp             GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred             HHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHc
Confidence            4588988888888777642            234578999999999999999998764

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=97.40  E-value=9.5e-05  Score=60.03  Aligned_cols=27  Identities=33%  Similarity=0.543  Sum_probs=24.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhhhcCC
Q 037945          174 KVIGLYGMGGVGKTTLLKKLNNKFRDT  200 (206)
Q Consensus       174 ~vI~IvG~~G~GKTTLa~~i~~~~~~~  200 (206)
                      ..++|+|++|+|||||++.+.+...+.
T Consensus       171 ~k~~IvG~nGsGKSTLlk~L~gl~~~~  197 (365)
T 1lw7_A          171 KTVAILGGESSGKSVLVNKLAAVFNTT  197 (365)
T ss_dssp             EEEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence            489999999999999999999877654

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=97.40  E-value=0.00017  Score=58.46  Aligned_cols=31  Identities=26%  Similarity=0.278  Sum_probs=25.7

Q ss_pred             cCCCeEEEEEcCCCCcHHHHHHHHHhhhc-CCCC
Q 037945          170 DHNEKVIGLYGMGGVGKTTLLKKLNNKFR-DTEH  202 (206)
Q Consensus       170 ~~~~~vI~IvG~~G~GKTTLa~~i~~~~~-~~~~  202 (206)
                      .+.  +++|+|++|+|||||++.+.+... +..|
T Consensus       214 ~G~--~~~lvG~sG~GKSTLln~L~g~~~~~~~G  245 (358)
T 2rcn_A          214 TGR--ISIFAGQSGVGKSSLLNALLGLQNEILTN  245 (358)
T ss_dssp             TTS--EEEEECCTTSSHHHHHHHHHCCSSCCCCC
T ss_pred             CCC--EEEEECCCCccHHHHHHHHhccccccccC
Confidence            455  899999999999999999998765 5433

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=97.40  E-value=0.00022  Score=63.41  Aligned_cols=47  Identities=23%  Similarity=0.355  Sum_probs=40.4

Q ss_pred             CCCccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          151 IGKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       151 ~~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      ...++|++..+..+...|......-+-++|++|+||||+|+.+.+..
T Consensus       179 ld~iiG~~~~i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~l  225 (758)
T 3pxi_A          179 LDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQI  225 (758)
T ss_dssp             SCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred             CCCccCchHHHHHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHHH
Confidence            35689999999999999977554567899999999999999998775

>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*

Probab=97.39  E-value=0.00027  Score=56.08  Aligned_cols=47  Identities=19%  Similarity=0.060  Sum_probs=39.3

Q ss_pred             CCCccchHHHHHHHHHhhhcCCC-eEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          151 IGKTVGLDSIISEVWRCIEDHNE-KVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       151 ~~~~~g~~~~~~~l~~~L~~~~~-~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      ...++|.+..+..+..++..+.. +.+-+.|++|+||||+++.+.+..
T Consensus        25 ~~~ivg~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l   72 (324)
T 3u61_B           25 IDECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDV   72 (324)
T ss_dssp             TTTSCCCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHT
T ss_pred             HHHHhCcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHh
Confidence            35688999999999999987654 477788889999999999998765

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=97.37  E-value=0.00021  Score=56.60  Aligned_cols=27  Identities=30%  Similarity=0.410  Sum_probs=23.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhhcCCCC
Q 037945          175 VIGLYGMGGVGKTTLLKKLNNKFRDTEH  202 (206)
Q Consensus       175 vI~IvG~~G~GKTTLa~~i~~~~~~~~~  202 (206)
                      +++++|++|+|||||++.+. ...+.+|
T Consensus       167 i~~l~G~sG~GKSTLln~l~-~~~~~~G  193 (302)
T 2yv5_A          167 ICILAGPSGVGKSSILSRLT-GEELRTQ  193 (302)
T ss_dssp             EEEEECSTTSSHHHHHHHHH-SCCCCCS
T ss_pred             EEEEECCCCCCHHHHHHHHH-HhhCccc
Confidence            89999999999999999999 7655444

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=97.36  E-value=0.0003  Score=62.45  Aligned_cols=47  Identities=21%  Similarity=0.303  Sum_probs=40.5

Q ss_pred             CCCccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          151 IGKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       151 ~~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      ...++|++..+..+...|......-+-++|++|+||||||+.+.+..
T Consensus       185 ~d~~iGr~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l  231 (758)
T 1r6b_X          185 IDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRI  231 (758)
T ss_dssp             SCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCccCCHHHHHHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHHH
Confidence            45689999999999999887655578899999999999999998764

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=97.36  E-value=0.00019  Score=58.55  Aligned_cols=35  Identities=23%  Similarity=0.073  Sum_probs=26.7

Q ss_pred             HHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          161 ISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       161 ~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      ++++...+..+.  +|+|+|++|+|||||++.+.+..
T Consensus       159 l~~~~~~i~~~~--~i~l~G~~GsGKSTl~~~l~~~~  193 (377)
T 1svm_A          159 LKCMVYNIPKKR--YWLFKGPIDSGKTTLAAALLELC  193 (377)
T ss_dssp             HHHHHHCCTTCC--EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             HHhcccccCCCC--EEEEECCCCCCHHHHHHHHHhhc
Confidence            334444444455  99999999999999999998754

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=97.36  E-value=0.00028  Score=56.33  Aligned_cols=46  Identities=22%  Similarity=0.258  Sum_probs=35.5

Q ss_pred             CCccchHHHHHHHHHhhhc------------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          152 GKTVGLDSIISEVWRCIED------------HNEKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~------------~~~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      ..++|.+..++.|...+.-            ...+-|-++|++|+|||+||+.+++..
T Consensus        12 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~   69 (322)
T 1xwi_A           12 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEA   69 (322)
T ss_dssp             GGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred             HHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHc
Confidence            4578888887777765531            123578899999999999999999865

>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}

Probab=97.36  E-value=0.00017  Score=57.54  Aligned_cols=43  Identities=26%  Similarity=0.276  Sum_probs=37.0

Q ss_pred             CccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          153 KTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       153 ~~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      .++|.+..+..+...+..+.  -+-++|++|+|||+||+.+.+..
T Consensus        28 ~i~g~~~~~~~l~~~l~~~~--~vll~G~pGtGKT~la~~la~~~   70 (331)
T 2r44_A           28 VVVGQKYMINRLLIGICTGG--HILLEGVPGLAKTLSVNTLAKTM   70 (331)
T ss_dssp             TCCSCHHHHHHHHHHHHHTC--CEEEESCCCHHHHHHHHHHHHHT
T ss_pred             ceeCcHHHHHHHHHHHHcCC--eEEEECCCCCcHHHHHHHHHHHh
Confidence            47898888888888887766  78899999999999999998754

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=97.35  E-value=0.00027  Score=52.92  Aligned_cols=37  Identities=24%  Similarity=0.395  Sum_probs=28.6

Q ss_pred             HHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          161 ISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       161 ~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      .+.+-..+......+|.|+|.+|+|||||+..+....
T Consensus        26 a~~~r~~~~~~~~~~i~ivG~~gvGKTtl~~~l~~~~   62 (226)
T 2hf9_A           26 ADKNRKLLNKHGVVAFDFMGAIGSGKTLLIEKLIDNL   62 (226)
T ss_dssp             HHHHHHHHHHTTCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence            3444444455667899999999999999999987664

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=97.34  E-value=0.00012  Score=53.69  Aligned_cols=26  Identities=31%  Similarity=0.365  Sum_probs=22.7

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945          173 EKVIGLYGMGGVGKTTLLKKLNNKFR  198 (206)
Q Consensus       173 ~~vI~IvG~~G~GKTTLa~~i~~~~~  198 (206)
                      .-.|+|+|.+|+|||||++.+.+...
T Consensus        29 ~~kv~lvG~~g~GKSTLl~~l~~~~~   54 (191)
T 1oix_A           29 LFKVVLIGDSGVGKSNLLSRFTRNEF   54 (191)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHSCC
T ss_pred             ceEEEEECcCCCCHHHHHHHHhcCCC
Confidence            35899999999999999999987654

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=97.34  E-value=0.00021  Score=53.43  Aligned_cols=41  Identities=15%  Similarity=0.306  Sum_probs=31.1

Q ss_pred             hHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          157 LDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       157 ~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      .....+.+...+......+|.|+|.+|+|||||+..+.+..
T Consensus        14 ~~~~~~~~~~~~~~~~~~~i~i~G~~g~GKTTl~~~l~~~~   54 (221)
T 2wsm_A           14 NKRLAEKNREALRESGTVAVNIMGAIGSGKTLLIERTIERI   54 (221)
T ss_dssp             HHHHHHHHHHHHHHHTCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHhhcccCceEEEEEcCCCCCHHHHHHHHHHHh
Confidence            34455555555555677899999999999999999887653

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=97.33  E-value=0.00034  Score=56.43  Aligned_cols=47  Identities=19%  Similarity=0.242  Sum_probs=35.9

Q ss_pred             CCccchHHHHHH---HHHhhhcCCC--eEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945          152 GKTVGLDSIISE---VWRCIEDHNE--KVIGLYGMGGVGKTTLLKKLNNKFR  198 (206)
Q Consensus       152 ~~~~g~~~~~~~---l~~~L~~~~~--~vI~IvG~~G~GKTTLa~~i~~~~~  198 (206)
                      ..++|.+.....   +...+..+..  +.+-++|++|+||||||+.+.+...
T Consensus        44 ~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~   95 (368)
T 3uk6_A           44 QGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALG   95 (368)
T ss_dssp             TTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred             hhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence            468898876554   4555555443  4899999999999999999998764

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=97.30  E-value=0.00035  Score=55.65  Aligned_cols=46  Identities=24%  Similarity=0.316  Sum_probs=36.3

Q ss_pred             CCccchHHHHHHHHHhhh----------c--CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          152 GKTVGLDSIISEVWRCIE----------D--HNEKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~----------~--~~~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      ..++|.+..++.|...+.          .  ...+-|-++|++|+|||+||+.+.+..
T Consensus        18 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~   75 (322)
T 3eie_A           18 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA   75 (322)
T ss_dssp             GGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHH
T ss_pred             HHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHH
Confidence            458899888888887762          1  123468999999999999999998865

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=97.30  E-value=0.00013  Score=55.92  Aligned_cols=23  Identities=39%  Similarity=0.534  Sum_probs=21.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHhhhc
Q 037945          176 IGLYGMGGVGKTTLLKKLNNKFR  198 (206)
Q Consensus       176 I~IvG~~G~GKTTLa~~i~~~~~  198 (206)
                      +.|+|++|+|||||++.+.+...
T Consensus        52 ~ll~G~~G~GKTtl~~~i~~~~~   74 (254)
T 1ixz_A           52 VLLVGPPGVGKTHLARAVAGEAR   74 (254)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHTT
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC
Confidence            89999999999999999998653

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=97.30  E-value=0.00015  Score=58.79  Aligned_cols=25  Identities=24%  Similarity=0.390  Sum_probs=22.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhhcC
Q 037945          175 VIGLYGMGGVGKTTLLKKLNNKFRD  199 (206)
Q Consensus       175 vI~IvG~~G~GKTTLa~~i~~~~~~  199 (206)
                      +|+|+|++|+|||||++.+.+...+
T Consensus       125 ~i~I~GptGSGKTTlL~~l~g~~~~  149 (356)
T 3jvv_A          125 LVLVTGPTGSGKSTTLAAMLDYLNN  149 (356)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhcccC
Confidence            9999999999999999999876543

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=97.30  E-value=8e-05  Score=52.20  Aligned_cols=44  Identities=20%  Similarity=0.259  Sum_probs=30.3

Q ss_pred             CccchHHHHHHHHHhhhc--CCCeEEEEEcCCCCcHHHHHHHHHhh
Q 037945          153 KTVGLDSIISEVWRCIED--HNEKVIGLYGMGGVGKTTLLKKLNNK  196 (206)
Q Consensus       153 ~~~g~~~~~~~l~~~L~~--~~~~vI~IvG~~G~GKTTLa~~i~~~  196 (206)
                      .++|....+.++...+..  ....-|-|+|+.|+|||++|+.+++.
T Consensus         5 ~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~   50 (143)
T 3co5_A            5 DKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKN   50 (143)
T ss_dssp             ---CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCT
T ss_pred             CceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHh
Confidence            356776666666666543  22225779999999999999998764

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=97.29  E-value=4.9e-05  Score=65.54  Aligned_cols=40  Identities=25%  Similarity=0.427  Sum_probs=31.2

Q ss_pred             HHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCC
Q 037945          161 ISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEH  202 (206)
Q Consensus       161 ~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~  202 (206)
                      ++++...+..++  +++|+|++|+|||||++.+.+..++.+|
T Consensus       357 l~~isl~i~~G~--~~~ivG~sGsGKSTll~~l~g~~~p~~G  396 (578)
T 4a82_A          357 LKDINLSIEKGE--TVAFVGMSGGGKSTLINLIPRFYDVTSG  396 (578)
T ss_dssp             EEEEEEEECTTC--EEEEECSTTSSHHHHHTTTTTSSCCSEE
T ss_pred             eeeeEEEECCCC--EEEEECCCCChHHHHHHHHhcCCCCCCc
Confidence            344444455577  9999999999999999999988776544

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=97.29  E-value=9.5e-05  Score=62.99  Aligned_cols=39  Identities=15%  Similarity=0.110  Sum_probs=31.1

Q ss_pred             HHHHHHHHH-hhhcCCCeEEEEEcCCCCcHHHHHHH--HHhhhc
Q 037945          158 DSIISEVWR-CIEDHNEKVIGLYGMGGVGKTTLLKK--LNNKFR  198 (206)
Q Consensus       158 ~~~~~~l~~-~L~~~~~~vI~IvG~~G~GKTTLa~~--i~~~~~  198 (206)
                      ...++++.. .+..++  +++|+|++|+|||||++.  +.+-..
T Consensus        25 ~~~Ld~i~~G~i~~Ge--~~~l~G~nGsGKSTL~~~~ll~Gl~~   66 (525)
T 1tf7_A           25 IEGFDDISHGGLPIGR--STLVSGTSGTGKTLFSIQFLYNGIIE   66 (525)
T ss_dssp             CTTHHHHTTSSEETTS--EEEEEESTTSSHHHHHHHHHHHHHHH
T ss_pred             chhHHHhcCCCCCCCe--EEEEEcCCCCCHHHHHHHHHHHHHHh
Confidence            346777776 777788  999999999999999999  445443

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=97.28  E-value=6.4e-05  Score=65.05  Aligned_cols=50  Identities=18%  Similarity=0.228  Sum_probs=34.9

Q ss_pred             CCCccch-HHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCC
Q 037945          151 IGKTVGL-DSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEH  202 (206)
Q Consensus       151 ~~~~~g~-~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~  202 (206)
                      .+..|+. ...++++...+..++  +++|+|++|+|||||++.+.+..++.+|
T Consensus       360 v~~~y~~~~~~l~~isl~i~~G~--~~~ivG~sGsGKSTll~~l~g~~~p~~G  410 (598)
T 3qf4_B          360 VWFSYDKKKPVLKDITFHIKPGQ--KVALVGPTGSGKTTIVNLLMRFYDVDRG  410 (598)
T ss_dssp             EECCSSSSSCSCCSEEEECCTTC--EEEEECCTTSSTTHHHHHHTTSSCCSEE
T ss_pred             EEEECCCCCccccceEEEEcCCC--EEEEECCCCCcHHHHHHHHhcCcCCCCe
Confidence            3444542 223444444455577  9999999999999999999988776544

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=97.26  E-value=2.9e-05  Score=70.31  Aligned_cols=42  Identities=21%  Similarity=0.416  Sum_probs=30.8

Q ss_pred             CCccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHh
Q 037945          152 GKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNN  195 (206)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~  195 (206)
                      +..||....++++...+..++  +++|+|+||+|||||++.|.+
T Consensus       442 s~~yg~~~iL~~vsl~I~~Ge--~v~LiGpNGsGKSTLLk~Lag  483 (986)
T 2iw3_A          442 SLAYGAKILLNKTQLRLKRAR--RYGICGPNGCGKSTLMRAIAN  483 (986)
T ss_dssp             EEEETTEEEEEEEEEEEETTC--EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCEEeEecceEEEcCCC--EEEEECCCCCCHHHHHHHHhC
Confidence            444554333444444455677  999999999999999999985

>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*

Probab=97.26  E-value=0.0003  Score=54.23  Aligned_cols=45  Identities=20%  Similarity=0.250  Sum_probs=31.6

Q ss_pred             CccchHHHHHHHHHhhhc--CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          153 KTVGLDSIISEVWRCIED--HNEKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       153 ~~~g~~~~~~~l~~~L~~--~~~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      .++|.+..+..+...+..  ....-|-|+|+.|+|||+||+.+++..
T Consensus         7 ~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~   53 (265)
T 2bjv_A            7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLS   53 (265)
T ss_dssp             ---CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTS
T ss_pred             cceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhc
Confidence            467877777766655543  222367799999999999999998764

>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}

Probab=97.25  E-value=0.00031  Score=59.46  Aligned_cols=43  Identities=16%  Similarity=0.160  Sum_probs=37.6

Q ss_pred             CccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          153 KTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       153 ~~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      .++|.+..++.+...+..+.  -|-++|++|+|||+||+.+.+..
T Consensus        23 ~ivGq~~~i~~l~~al~~~~--~VLL~GpPGtGKT~LAraLa~~l   65 (500)
T 3nbx_X           23 GLYERSHAIRLCLLAALSGE--SVFLLGPPGIAKSLIARRLKFAF   65 (500)
T ss_dssp             TCSSCHHHHHHHHHHHHHTC--EEEEECCSSSSHHHHHHHGGGGB
T ss_pred             hhHHHHHHHHHHHHHHhcCC--eeEeecCchHHHHHHHHHHHHHH
Confidence            37899888888888888777  78999999999999999998765

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=97.25  E-value=0.00016  Score=57.15  Aligned_cols=27  Identities=44%  Similarity=0.446  Sum_probs=23.4

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhhhcC
Q 037945          173 EKVIGLYGMGGVGKTTLLKKLNNKFRD  199 (206)
Q Consensus       173 ~~vI~IvG~~G~GKTTLa~~i~~~~~~  199 (206)
                      ..+|+++|++|+||||++..+.....+
T Consensus       105 g~vi~lvG~~GsGKTTl~~~LA~~l~~  131 (296)
T 2px0_A          105 SKYIVLFGSTGAGKTTTLAKLAAISML  131 (296)
T ss_dssp             SSEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            349999999999999999999877653

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=97.23  E-value=0.00015  Score=57.37  Aligned_cols=28  Identities=29%  Similarity=0.534  Sum_probs=23.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhhcCCCC
Q 037945          175 VIGLYGMGGVGKTTLLKKLNNKFRDTEH  202 (206)
Q Consensus       175 vI~IvG~~G~GKTTLa~~i~~~~~~~~~  202 (206)
                      +++++|++|+|||||++.+.+...+.+|
T Consensus       171 iv~l~G~sG~GKSTll~~l~g~~~~~~G  198 (301)
T 1u0l_A          171 ISTMAGLSGVGKSSLLNAINPGLKLRVS  198 (301)
T ss_dssp             EEEEECSTTSSHHHHHHHHSTTCCCC--
T ss_pred             eEEEECCCCCcHHHHHHHhccccccccc
Confidence            8999999999999999999987766544

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=97.20  E-value=0.00019  Score=55.88  Aligned_cols=23  Identities=39%  Similarity=0.534  Sum_probs=21.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHhhhc
Q 037945          176 IGLYGMGGVGKTTLLKKLNNKFR  198 (206)
Q Consensus       176 I~IvG~~G~GKTTLa~~i~~~~~  198 (206)
                      +.|+|++|+|||||++.|.+...
T Consensus        76 vll~Gp~GtGKTtl~~~i~~~~~   98 (278)
T 1iy2_A           76 VLLVGPPGVGKTHLARAVAGEAR   98 (278)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHTT
T ss_pred             EEEECCCcChHHHHHHHHHHHcC
Confidence            89999999999999999998653

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=97.19  E-value=8.6e-05  Score=64.12  Aligned_cols=40  Identities=20%  Similarity=0.323  Sum_probs=31.0

Q ss_pred             HHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCC
Q 037945          161 ISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEH  202 (206)
Q Consensus       161 ~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~  202 (206)
                      ++++...+..++  +++|+|++|+|||||++.+.+..++.+|
T Consensus       359 l~~isl~i~~Ge--~~~ivG~sGsGKSTll~~l~g~~~~~~G  398 (587)
T 3qf4_A          359 LSGVNFSVKPGS--LVAVLGETGSGKSTLMNLIPRLIDPERG  398 (587)
T ss_dssp             EEEEEEEECTTC--EEEEECSSSSSHHHHHHTTTTSSCCSEE
T ss_pred             eeceEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCccCCCc
Confidence            344444445577  9999999999999999999988776544

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=97.19  E-value=7.8e-05  Score=67.57  Aligned_cols=39  Identities=23%  Similarity=0.301  Sum_probs=30.4

Q ss_pred             HHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCC
Q 037945          162 SEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEH  202 (206)
Q Consensus       162 ~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~  202 (206)
                      +++...+..++  +++|+|+||+|||||++.+.+...+.+|
T Consensus       690 ~dVSl~I~~Ge--ivaIiGpNGSGKSTLLklLaGll~P~sG  728 (986)
T 2iw3_A          690 TDINFQCSLSS--RIAVIGPNGAGKSTLINVLTGELLPTSG  728 (986)
T ss_dssp             EEEEEEEETTC--EEEECSCCCHHHHHHHHHHTTSSCCSEE
T ss_pred             eccEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence            33444445577  9999999999999999999998766544

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=97.19  E-value=0.00035  Score=53.71  Aligned_cols=25  Identities=36%  Similarity=0.450  Sum_probs=22.4

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          173 EKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       173 ~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      ..+|.++|++|+||||+++.+....
T Consensus        32 ~~~i~l~G~~GsGKSTla~~L~~~l   56 (253)
T 2p5t_B           32 PIAILLGGQSGAGKTTIHRIKQKEF   56 (253)
T ss_dssp             CEEEEEESCGGGTTHHHHHHHHHHT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHhc
Confidence            4689999999999999999998764

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=97.19  E-value=0.00049  Score=54.00  Aligned_cols=25  Identities=28%  Similarity=0.279  Sum_probs=22.1

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          173 EKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       173 ~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      ..+|.|.|++|+|||||++.+....
T Consensus        33 ~~livl~G~sGsGKSTla~~L~~~~   57 (287)
T 1gvn_B           33 PTAFLLGGQPGSGKTSLRSAIFEET   57 (287)
T ss_dssp             CEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh
Confidence            4689999999999999999997654

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=97.19  E-value=0.00072  Score=52.33  Aligned_cols=27  Identities=26%  Similarity=0.172  Sum_probs=23.1

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          171 HNEKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       171 ~~~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      ....-+-++|++|+||||||+.+.+..
T Consensus        62 ~~~~~vLl~G~~GtGKT~la~~ia~~~   88 (272)
T 1d2n_A           62 TPLVSVLLEGPPHSGKTALAAKIAEES   88 (272)
T ss_dssp             CSEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHHh
Confidence            345678899999999999999998864

>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}

Probab=97.18  E-value=0.00061  Score=55.68  Aligned_cols=46  Identities=22%  Similarity=0.211  Sum_probs=37.0

Q ss_pred             CCccchHHHHHHHHHhhhc------------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          152 GKTVGLDSIISEVWRCIED------------HNEKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~------------~~~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      ..++|.+..++.|...+..            ...+-|-|+|+.|+|||+||+.|.+..
T Consensus       115 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~  172 (389)
T 3vfd_A          115 DDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAES  172 (389)
T ss_dssp             GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHT
T ss_pred             HHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhh
Confidence            4589999888888877731            123578999999999999999998764

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=97.18  E-value=0.00028  Score=55.93  Aligned_cols=28  Identities=43%  Similarity=0.501  Sum_probs=24.0

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhhhcCC
Q 037945          173 EKVIGLYGMGGVGKTTLLKKLNNKFRDT  200 (206)
Q Consensus       173 ~~vI~IvG~~G~GKTTLa~~i~~~~~~~  200 (206)
                      ..+|+|+|++|+||||++..+.....+.
T Consensus       104 ~~vi~ivG~~GsGKTTl~~~LA~~l~~~  131 (306)
T 1vma_A          104 PFVIMVVGVNGTGKTTSCGKLAKMFVDE  131 (306)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred             CeEEEEEcCCCChHHHHHHHHHHHHHhc
Confidence            4599999999999999999998876543

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=97.17  E-value=0.00026  Score=54.63  Aligned_cols=47  Identities=26%  Similarity=0.253  Sum_probs=32.0

Q ss_pred             CCccchHHHHHHHHHhhh---c---------CCCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945          152 GKTVGLDSIISEVWRCIE---D---------HNEKVIGLYGMGGVGKTTLLKKLNNKFR  198 (206)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~---~---------~~~~vI~IvG~~G~GKTTLa~~i~~~~~  198 (206)
                      ..++|.+..++.+...+.   .         ...+-+-++|++|+||||||+.+++...
T Consensus        11 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~   69 (268)
T 2r62_A           11 KDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAH   69 (268)
T ss_dssp             TTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHT
T ss_pred             HHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhC
Confidence            457777665555544433   1         1122477999999999999999998653

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=97.17  E-value=0.00016  Score=58.87  Aligned_cols=26  Identities=23%  Similarity=0.337  Sum_probs=23.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhhhcC
Q 037945          174 KVIGLYGMGGVGKTTLLKKLNNKFRD  199 (206)
Q Consensus       174 ~vI~IvG~~G~GKTTLa~~i~~~~~~  199 (206)
                      .+|+|+|++|+|||||++.+.+...+
T Consensus       137 ~~i~ivG~~GsGKTTll~~l~~~~~~  162 (372)
T 2ewv_A          137 GLILVTGPTGSGKSTTIASMIDYINQ  162 (372)
T ss_dssp             EEEEEECSSSSSHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhcCc
Confidence            39999999999999999999886554

>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A

Probab=97.16  E-value=0.00053  Score=55.44  Aligned_cols=44  Identities=23%  Similarity=0.242  Sum_probs=34.3

Q ss_pred             ccchHHHHHHHHHhhh-------------c--CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          154 TVGLDSIISEVWRCIE-------------D--HNEKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       154 ~~g~~~~~~~l~~~L~-------------~--~~~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      ++|.+..++.+...+.             .  ....-|.++|++|+||||+|+.|.+..
T Consensus        17 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~   75 (363)
T 3hws_A           17 VIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLL   75 (363)
T ss_dssp             CCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred             ccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHc
Confidence            6788888887777662             1  123478999999999999999998765

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.14  E-value=0.00078  Score=55.90  Aligned_cols=47  Identities=30%  Similarity=0.347  Sum_probs=35.9

Q ss_pred             CCccchHHHHHHHHHhhh----c---------CCCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945          152 GKTVGLDSIISEVWRCIE----D---------HNEKVIGLYGMGGVGKTTLLKKLNNKFR  198 (206)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~----~---------~~~~vI~IvG~~G~GKTTLa~~i~~~~~  198 (206)
                      ..+.|.+..++.|...+.    .         ...+=|-++||+|+|||+||+.|.+...
T Consensus       181 ~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~  240 (434)
T 4b4t_M          181 SDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTN  240 (434)
T ss_dssp             GGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred             HhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhC
Confidence            347788887777766542    1         2345789999999999999999998763

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*

Probab=97.14  E-value=0.00053  Score=55.42  Aligned_cols=46  Identities=24%  Similarity=0.286  Sum_probs=35.6

Q ss_pred             CCccchHHHHHHHHHhhhc------------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          152 GKTVGLDSIISEVWRCIED------------HNEKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~------------~~~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      ..++|.+..++.|...+..            ...+-|-++|++|+||||||+.+++..
T Consensus        51 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~  108 (355)
T 2qp9_X           51 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA  108 (355)
T ss_dssp             GGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred             HHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh
Confidence            4588988888888776631            112358899999999999999999875

>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A

Probab=97.12  E-value=0.00068  Score=56.48  Aligned_cols=46  Identities=22%  Similarity=0.284  Sum_probs=36.4

Q ss_pred             CCccchHHHHHHHHHhhh------------cCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          152 GKTVGLDSIISEVWRCIE------------DHNEKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~------------~~~~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      ..++|.+..++.|...+.            ....+-|-++|++|+|||+||+.+++..
T Consensus       134 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~  191 (444)
T 2zan_A          134 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEA  191 (444)
T ss_dssp             GGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHC
T ss_pred             HHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHc
Confidence            458898888888877652            1223578999999999999999999865

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=97.12  E-value=0.00094  Score=53.03  Aligned_cols=38  Identities=32%  Similarity=0.339  Sum_probs=27.8

Q ss_pred             HHHHHHHhhhcC--CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          160 IISEVWRCIEDH--NEKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       160 ~~~~l~~~L~~~--~~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      ....+...+...  ....+-|+|++|+|||||++.+++..
T Consensus        22 a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~   61 (324)
T 1l8q_A           22 AYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEA   61 (324)
T ss_dssp             HHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHH
Confidence            334444444443  34579999999999999999999865

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.12  E-value=0.00088  Score=55.51  Aligned_cols=47  Identities=32%  Similarity=0.467  Sum_probs=35.7

Q ss_pred             CCccchHHHHHHHHHhhh----c---------CCCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945          152 GKTVGLDSIISEVWRCIE----D---------HNEKVIGLYGMGGVGKTTLLKKLNNKFR  198 (206)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~----~---------~~~~vI~IvG~~G~GKTTLa~~i~~~~~  198 (206)
                      ..+.|.+..++.|...+.    .         ...+=|-++||+|+|||+||+.|.+...
T Consensus       172 ~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~  231 (428)
T 4b4t_K          172 ADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTK  231 (428)
T ss_dssp             GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHT
T ss_pred             HHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence            457788887777766543    1         2244689999999999999999998763

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.08  E-value=0.00097  Score=55.36  Aligned_cols=47  Identities=34%  Similarity=0.416  Sum_probs=35.3

Q ss_pred             CCccchHHHHHHHHHhhh----c---------CCCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945          152 GKTVGLDSIISEVWRCIE----D---------HNEKVIGLYGMGGVGKTTLLKKLNNKFR  198 (206)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~----~---------~~~~vI~IvG~~G~GKTTLa~~i~~~~~  198 (206)
                      ..+.|.+..++.|...+.    .         ...+=|-++||+|+|||+||+.|.+...
T Consensus       181 ~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~  240 (437)
T 4b4t_L          181 DGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIG  240 (437)
T ss_dssp             GGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred             hHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence            446788777776665543    1         2346789999999999999999998763

>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12

Probab=97.06  E-value=6.2e-05  Score=57.15  Aligned_cols=28  Identities=25%  Similarity=0.290  Sum_probs=24.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhhcCCCC
Q 037945          175 VIGLYGMGGVGKTTLLKKLNNKFRDTEH  202 (206)
Q Consensus       175 vI~IvG~~G~GKTTLa~~i~~~~~~~~~  202 (206)
                      +++|+|++|+|||||++.|+.-..+.+|
T Consensus        29 ~~~i~GpnGsGKSTll~~i~g~~~~~~G   56 (227)
T 1qhl_A           29 VTTLSGGNGAGKSTTMAAFVTALIPDLT   56 (227)
T ss_dssp             HHHHHSCCSHHHHHHHHHHHHHHSCCTT
T ss_pred             EEEEECCCCCCHHHHHHHHhcccccCCC
Confidence            6789999999999999999988776544

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=97.05  E-value=0.00011  Score=58.23  Aligned_cols=26  Identities=27%  Similarity=0.436  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhhcCC
Q 037945          175 VIGLYGMGGVGKTTLLKKLNNKFRDT  200 (206)
Q Consensus       175 vI~IvG~~G~GKTTLa~~i~~~~~~~  200 (206)
                      +++|+|++|+|||||++.+.+...+.
T Consensus       175 ~~~lvG~sG~GKSTLln~L~g~~~~~  200 (307)
T 1t9h_A          175 TTVFAGQSGVGKSSLLNAISPELGLR  200 (307)
T ss_dssp             EEEEEESHHHHHHHHHHHHCC-----
T ss_pred             EEEEECCCCCCHHHHHHHhccccccc
Confidence            99999999999999999998766543

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=96.99  E-value=0.00063  Score=51.20  Aligned_cols=27  Identities=44%  Similarity=0.506  Sum_probs=23.4

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945          172 NEKVIGLYGMGGVGKTTLLKKLNNKFR  198 (206)
Q Consensus       172 ~~~vI~IvG~~G~GKTTLa~~i~~~~~  198 (206)
                      ..++|-|.|++|+||||.++.+.....
T Consensus        28 k~kiI~llGpPGsGKgTqa~~L~~~~g   54 (217)
T 3umf_A           28 KAKVIFVLGGPGSGKGTQCEKLVQKFH   54 (217)
T ss_dssp             SCEEEEEECCTTCCHHHHHHHHHHHHC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHC
Confidence            456999999999999999999987653

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=96.99  E-value=0.0004  Score=54.07  Aligned_cols=29  Identities=28%  Similarity=0.360  Sum_probs=24.3

Q ss_pred             hhcCCCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945          168 IEDHNEKVIGLYGMGGVGKTTLLKKLNNKFR  198 (206)
Q Consensus       168 L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~  198 (206)
                      +..+.  ++.|+|++|+|||||+..+.....
T Consensus        27 l~~G~--i~~i~G~~GsGKTtl~~~l~~~~~   55 (279)
T 1nlf_A           27 MVAGT--VGALVSPGGAGKSMLALQLAAQIA   55 (279)
T ss_dssp             EETTS--EEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             ccCCC--EEEEEcCCCCCHHHHHHHHHHHHh
Confidence            44566  999999999999999999887543

>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20

Probab=96.98  E-value=0.0011  Score=53.78  Aligned_cols=24  Identities=33%  Similarity=0.429  Sum_probs=21.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          174 KVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       174 ~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      .-+-++|++|+||||||+.+.+..
T Consensus        73 ~~ill~Gp~GtGKT~la~~la~~l   96 (376)
T 1um8_A           73 SNILLIGPTGSGKTLMAQTLAKHL   96 (376)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHT
T ss_pred             CCEEEECCCCCCHHHHHHHHHHHh
Confidence            368899999999999999998765

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=96.97  E-value=0.0013  Score=50.11  Aligned_cols=26  Identities=23%  Similarity=0.222  Sum_probs=22.6

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          172 NEKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       172 ~~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      ...+|.|.|+.|+||||+++.+....
T Consensus        28 ~~~~I~l~G~~GsGKsT~a~~L~~~~   53 (243)
T 3tlx_A           28 PDGRYIFLGAPGSGKGTQSLNLKKSH   53 (243)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            45689999999999999999997654

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.95  E-value=0.0012  Score=54.23  Aligned_cols=47  Identities=32%  Similarity=0.396  Sum_probs=35.1

Q ss_pred             CCccchHHHHHHHHHhhh----c---------CCCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945          152 GKTVGLDSIISEVWRCIE----D---------HNEKVIGLYGMGGVGKTTLLKKLNNKFR  198 (206)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~----~---------~~~~vI~IvG~~G~GKTTLa~~i~~~~~  198 (206)
                      ..+.|.+..++.|...+.    .         ...+=|-++||+|+|||+||+.|.+...
T Consensus       148 ~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~  207 (405)
T 4b4t_J          148 DMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTD  207 (405)
T ss_dssp             GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHT
T ss_pred             HHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhC
Confidence            346788877776665543    1         2245688999999999999999998763

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=96.95  E-value=0.00059  Score=48.17  Aligned_cols=22  Identities=27%  Similarity=0.410  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHh
Q 037945          174 KVIGLYGMGGVGKTTLLKKLNN  195 (206)
Q Consensus       174 ~vI~IvG~~G~GKTTLa~~i~~  195 (206)
                      .+..|+|++|+|||||+..|+-
T Consensus        24 g~~~I~G~NGsGKStil~Ai~~   45 (149)
T 1f2t_A           24 GINLIIGQNGSGKSSLLDAILV   45 (149)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            4889999999999999998763

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=96.93  E-value=0.00055  Score=53.81  Aligned_cols=25  Identities=24%  Similarity=0.438  Sum_probs=22.2

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          173 EKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       173 ~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      ...+-++|++|+|||+||+.|++..
T Consensus        36 p~~lLl~GppGtGKT~la~aiA~~l   60 (293)
T 3t15_A           36 PLILGIWGGKGQGKSFQCELVFRKM   60 (293)
T ss_dssp             CSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh
Confidence            4578899999999999999999876

>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.93  E-value=0.0015  Score=54.45  Aligned_cols=47  Identities=28%  Similarity=0.360  Sum_probs=35.8

Q ss_pred             CCccchHHHHHHHHHhhh----c---------CCCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945          152 GKTVGLDSIISEVWRCIE----D---------HNEKVIGLYGMGGVGKTTLLKKLNNKFR  198 (206)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~----~---------~~~~vI~IvG~~G~GKTTLa~~i~~~~~  198 (206)
                      ..+.|.+..++.|.+.+.    .         ...+=|-++|++|+|||+||+.|.+...
T Consensus       209 ~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~  268 (467)
T 4b4t_H          209 SDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTD  268 (467)
T ss_dssp             SSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHT
T ss_pred             HHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccC
Confidence            357788887777766542    1         2356788999999999999999998763

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=96.92  E-value=0.0011  Score=55.11  Aligned_cols=37  Identities=24%  Similarity=0.346  Sum_probs=27.3

Q ss_pred             HHHHHHhhhcCC-CeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          161 ISEVWRCIEDHN-EKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       161 ~~~l~~~L~~~~-~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      ...+........ ..-+.|+|++|+|||||++.|++..
T Consensus       117 ~~~~~~~a~~~~~~~~lll~Gp~G~GKTtLa~aia~~l  154 (440)
T 2z4s_A          117 YHAALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYV  154 (440)
T ss_dssp             HHHHHHHHHSTTSSCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence            333444443332 5689999999999999999999865

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=96.92  E-value=0.00028  Score=61.22  Aligned_cols=28  Identities=21%  Similarity=0.261  Sum_probs=23.5

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhhhcC
Q 037945          172 NEKVIGLYGMGGVGKTTLLKKLNNKFRD  199 (206)
Q Consensus       172 ~~~vI~IvG~~G~GKTTLa~~i~~~~~~  199 (206)
                      ++..|+|+|++|+|||||++.|.+-..|
T Consensus        44 ~lp~iaIvG~nGsGKSTLL~~I~Gl~~P   71 (608)
T 3szr_A           44 ALPAIAVIGDQSSGKSSVLEALSGVALP   71 (608)
T ss_dssp             CCCCEECCCCTTSCHHHHHHHHHSCC--
T ss_pred             cCCeEEEECCCCChHHHHHHHHhCCCCC
Confidence            3567999999999999999999987655

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=96.92  E-value=0.0014  Score=56.00  Aligned_cols=46  Identities=24%  Similarity=0.433  Sum_probs=33.7

Q ss_pred             CccchHHHHHHHHHhhh------cCCCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945          153 KTVGLDSIISEVWRCIE------DHNEKVIGLYGMGGVGKTTLLKKLNNKFR  198 (206)
Q Consensus       153 ~~~g~~~~~~~l~~~L~------~~~~~vI~IvG~~G~GKTTLa~~i~~~~~  198 (206)
                      .++|.+.....+...+.      +..-..+.++|++|+||||||+.|.+...
T Consensus        82 di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~  133 (543)
T 3m6a_A           82 EHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLG  133 (543)
T ss_dssp             HCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHHT
T ss_pred             HhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence            47787776666544332      11234899999999999999999988763

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=96.91  E-value=0.00068  Score=54.06  Aligned_cols=27  Identities=37%  Similarity=0.588  Sum_probs=23.3

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhhhcC
Q 037945          173 EKVIGLYGMGGVGKTTLLKKLNNKFRD  199 (206)
Q Consensus       173 ~~vI~IvG~~G~GKTTLa~~i~~~~~~  199 (206)
                      ..+|+|+|++|+||||++..+......
T Consensus       105 ~~vI~ivG~~G~GKTT~~~~LA~~l~~  131 (320)
T 1zu4_A          105 LNIFMLVGVNGTGKTTSLAKMANYYAE  131 (320)
T ss_dssp             CEEEEEESSTTSSHHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            459999999999999999998876544

>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G

Probab=96.90  E-value=0.00046  Score=55.15  Aligned_cols=47  Identities=19%  Similarity=0.256  Sum_probs=33.4

Q ss_pred             CCccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945          152 GKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFR  198 (206)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~  198 (206)
                      ..++|.+..+..+...+......-+-++|++|+|||+||+.+.+...
T Consensus        24 ~~i~G~~~~~~~l~~~~~~~~~~~vLl~G~~GtGKT~la~~la~~~~   70 (350)
T 1g8p_A           24 SAIVGQEDMKLALLLTAVDPGIGGVLVFGDRGTGKSTAVRALAALLP   70 (350)
T ss_dssp             GGSCSCHHHHHHHHHHHHCGGGCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred             hhccChHHHHHHHHHHhhCCCCceEEEECCCCccHHHHHHHHHHhCc
Confidence            45788877665544444332222488999999999999999988653

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=96.89  E-value=0.0013  Score=55.23  Aligned_cols=46  Identities=28%  Similarity=0.319  Sum_probs=32.8

Q ss_pred             CCccchHHHHHHHHHhh---hcC---------CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          152 GKTVGLDSIISEVWRCI---EDH---------NEKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       152 ~~~~g~~~~~~~l~~~L---~~~---------~~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      ..++|.+..++.+...+   ...         -.+-|.++|++|+||||||+.|.+..
T Consensus        16 ~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~   73 (476)
T 2ce7_A           16 KDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEA   73 (476)
T ss_dssp             GGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             HHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHc
Confidence            45788777665555443   221         12358899999999999999999865

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=96.89  E-value=0.00068  Score=53.42  Aligned_cols=27  Identities=33%  Similarity=0.427  Sum_probs=23.3

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhhhcC
Q 037945          173 EKVIGLYGMGGVGKTTLLKKLNNKFRD  199 (206)
Q Consensus       173 ~~vI~IvG~~G~GKTTLa~~i~~~~~~  199 (206)
                      ..+|+|+|++|+||||++..+......
T Consensus        98 ~~~i~i~g~~G~GKTT~~~~la~~~~~  124 (295)
T 1ls1_A           98 RNLWFLVGLQGSGKTTTAAKLALYYKG  124 (295)
T ss_dssp             SEEEEEECCTTTTHHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            349999999999999999999877654

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=96.88  E-value=0.00047  Score=58.99  Aligned_cols=27  Identities=26%  Similarity=0.477  Sum_probs=24.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhhhcCC
Q 037945          174 KVIGLYGMGGVGKTTLLKKLNNKFRDT  200 (206)
Q Consensus       174 ~vI~IvG~~G~GKTTLa~~i~~~~~~~  200 (206)
                      .+|.|+|++|+|||||++.+.+...+.
T Consensus       370 ~iI~LiG~sGSGKSTLar~La~~L~~~  396 (552)
T 3cr8_A          370 FTVFFTGLSGAGKSTLARALAARLMEM  396 (552)
T ss_dssp             EEEEEEESSCHHHHHHHHHHHHHHHTT
T ss_pred             eEEEEECCCCChHHHHHHHHHHhhccc
Confidence            499999999999999999999887654

>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*

Probab=96.87  E-value=0.0017  Score=54.31  Aligned_cols=47  Identities=21%  Similarity=0.263  Sum_probs=34.9

Q ss_pred             CCccchHHHHHHHHH---hhhcCC--CeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945          152 GKTVGLDSIISEVWR---CIEDHN--EKVIGLYGMGGVGKTTLLKKLNNKFR  198 (206)
Q Consensus       152 ~~~~g~~~~~~~l~~---~L~~~~--~~vI~IvG~~G~GKTTLa~~i~~~~~  198 (206)
                      ..++|.+..++.+..   .+..+.  .+-+-++|++|+||||||+.+.+...
T Consensus        37 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l~   88 (456)
T 2c9o_A           37 SGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELG   88 (456)
T ss_dssp             TTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred             hhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHhC
Confidence            558898877665443   343432  24688999999999999999998764

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=96.85  E-value=0.0018  Score=54.80  Aligned_cols=46  Identities=24%  Similarity=0.294  Sum_probs=32.3

Q ss_pred             CCccchHHHHHHHH---HhhhcC---------CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          152 GKTVGLDSIISEVW---RCIEDH---------NEKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       152 ~~~~g~~~~~~~l~---~~L~~~---------~~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      ..++|.+..+..+.   ..+...         -.+=+.|+|++|+|||||++.|.+..
T Consensus        31 ~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~   88 (499)
T 2dhr_A           31 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA   88 (499)
T ss_dssp             TSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred             HHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence            45788776555444   333321         01248999999999999999999865

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=96.84  E-value=0.00071  Score=52.87  Aligned_cols=23  Identities=35%  Similarity=0.694  Sum_probs=20.7

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHH
Q 037945          172 NEKVIGLYGMGGVGKTTLLKKLN  194 (206)
Q Consensus       172 ~~~vI~IvG~~G~GKTTLa~~i~  194 (206)
                      ...+|+|.|+.|+||||+++.+.
T Consensus        74 ~~~iI~I~G~~GSGKSTva~~La   96 (281)
T 2f6r_A           74 GLYVLGLTGISGSGKSSVAQRLK   96 (281)
T ss_dssp             TCEEEEEEECTTSCHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHH
Confidence            35689999999999999999986

>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.84  E-value=0.0021  Score=53.10  Aligned_cols=47  Identities=36%  Similarity=0.476  Sum_probs=35.1

Q ss_pred             CCccchHHHHHHHHHhhh----c---------CCCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945          152 GKTVGLDSIISEVWRCIE----D---------HNEKVIGLYGMGGVGKTTLLKKLNNKFR  198 (206)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~----~---------~~~~vI~IvG~~G~GKTTLa~~i~~~~~  198 (206)
                      ..+.|.+..++.|.+.+.    .         .-.+=|-++|++|+|||+||+.|.+...
T Consensus       182 ~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~  241 (437)
T 4b4t_I          182 SDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTS  241 (437)
T ss_dssp             GGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHT
T ss_pred             eecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhC
Confidence            346678777776665543    1         2245799999999999999999998764

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=96.84  E-value=0.00051  Score=56.77  Aligned_cols=24  Identities=29%  Similarity=0.365  Sum_probs=21.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhhc
Q 037945          175 VIGLYGMGGVGKTTLLKKLNNKFR  198 (206)
Q Consensus       175 vI~IvG~~G~GKTTLa~~i~~~~~  198 (206)
                      .|+|+|++|+|||||++.+++...
T Consensus        33 ~I~lvG~sGaGKSTLln~L~g~~~   56 (418)
T 2qag_C           33 TLMVVGESGLGKSTLINSLFLTDL   56 (418)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTCCC
T ss_pred             EEEEECCCCCcHHHHHHHHhCCCC
Confidence            469999999999999999998654

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=96.82  E-value=0.0019  Score=46.88  Aligned_cols=26  Identities=31%  Similarity=0.308  Sum_probs=22.4

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          172 NEKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       172 ~~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      ....|.|+|..|+|||||++.+.+..
T Consensus        47 ~~~~i~vvG~~g~GKSsll~~l~~~~   72 (193)
T 2ged_A           47 YQPSIIIAGPQNSGKTSLLTLLTTDS   72 (193)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            34589999999999999999988754

>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*

Probab=96.81  E-value=0.0013  Score=54.75  Aligned_cols=47  Identities=23%  Similarity=0.292  Sum_probs=35.0

Q ss_pred             CCccchHHHHHHHHHhhhc--------------CCCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945          152 GKTVGLDSIISEVWRCIED--------------HNEKVIGLYGMGGVGKTTLLKKLNNKFR  198 (206)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~--------------~~~~vI~IvG~~G~GKTTLa~~i~~~~~  198 (206)
                      ..++|.+..+..+...+..              -..+-|-++|++|+||||+|+.+.+...
T Consensus        15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~   75 (444)
T 1g41_A           15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLAN   75 (444)
T ss_dssp             TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcC
Confidence            4578888777777655522              1234688999999999999999987653

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=96.81  E-value=0.00042  Score=65.00  Aligned_cols=41  Identities=17%  Similarity=0.342  Sum_probs=32.4

Q ss_pred             HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCC
Q 037945          160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEH  202 (206)
Q Consensus       160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~  202 (206)
                      .++++...+..++  +++|+|++|+|||||++.+.+..++.+|
T Consensus      1048 ~l~~vsl~i~~Ge--~v~ivG~sGsGKSTl~~~l~g~~~p~~G 1088 (1284)
T 3g5u_A         1048 VLQGLSLEVKKGQ--TLALVGSSGCGKSTVVQLLERFYDPMAG 1088 (1284)
T ss_dssp             SBSSCCEEECSSS--EEEEECSSSTTHHHHHHHHTTSSCCSEE
T ss_pred             eecceeEEEcCCC--EEEEECCCCCCHHHHHHHHhcCcCCCCC
Confidence            3445555555677  9999999999999999999998776544

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=96.80  E-value=0.00072  Score=54.34  Aligned_cols=27  Identities=30%  Similarity=0.486  Sum_probs=23.1

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          171 HNEKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       171 ~~~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      ....+|+|+|.+|+|||||++.+.+..
T Consensus        54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~   80 (341)
T 2p67_A           54 GNTLRLGVTGTPGAGKSTFLEAFGMLL   80 (341)
T ss_dssp             SCSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CCCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence            455699999999999999999987653

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=96.79  E-value=0.0016  Score=54.10  Aligned_cols=43  Identities=26%  Similarity=0.489  Sum_probs=33.0

Q ss_pred             cchHHHHHHHHHhhhc-----------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          155 VGLDSIISEVWRCIED-----------HNEKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       155 ~g~~~~~~~l~~~L~~-----------~~~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      .|.+..++.|...+.+           .+...|+|+|.+|+|||||++.+.+..
T Consensus       151 ~gv~~L~~~i~~~l~~~~~~~~~~~~~~~~~kvaivG~~gvGKSTLln~l~g~~  204 (439)
T 1mky_A          151 INLDTMLETIIKKLEEKGLDLESKPEITDAIKVAIVGRPNVGKSTLFNAILNKE  204 (439)
T ss_dssp             BSHHHHHHHHHHHHHHTTCCSSSCCCCCSCEEEEEECSTTSSHHHHHHHHHTST
T ss_pred             CCHHHHHHHHHHhcccccccchhccccccCceEEEECCCCCCHHHHHHHHhCCc
Confidence            4667777777766642           123589999999999999999998764

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=96.77  E-value=0.001  Score=53.71  Aligned_cols=25  Identities=28%  Similarity=0.498  Sum_probs=22.3

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          173 EKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       173 ~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      ..+|+|+|++|+|||||.+.+.+..
T Consensus        74 ~~~v~lvG~pgaGKSTLln~L~~~~   98 (349)
T 2www_A           74 AFRVGLSGPPGAGKSTFIEYFGKML   98 (349)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             ceEEEEEcCCCCCHHHHHHHHHHHh
Confidence            5599999999999999999998753

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=96.76  E-value=0.0028  Score=51.18  Aligned_cols=37  Identities=24%  Similarity=0.429  Sum_probs=27.5

Q ss_pred             HHHHHHhhh--cCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          161 ISEVWRCIE--DHNEKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       161 ~~~l~~~L~--~~~~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      ...+...+.  .+...+|+|+|.+|+|||||+..+....
T Consensus        65 ~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l  103 (355)
T 3p32_A           65 AQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHL  103 (355)
T ss_dssp             HHHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             HHHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence            334444444  3567799999999999999999886553

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=96.72  E-value=0.0018  Score=53.71  Aligned_cols=26  Identities=38%  Similarity=0.471  Sum_probs=22.6

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945          173 EKVIGLYGMGGVGKTTLLKKLNNKFR  198 (206)
Q Consensus       173 ~~vI~IvG~~G~GKTTLa~~i~~~~~  198 (206)
                      ..+|.++|++|+||||++..+.....
T Consensus        97 ~~vI~lvG~~GsGKTTt~~kLA~~l~  122 (433)
T 3kl4_A           97 PFIIMLVGVQGSGKTTTAGKLAYFYK  122 (433)
T ss_dssp             SEEEEECCCTTSCHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            56999999999999999999876554

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=96.72  E-value=0.0021  Score=50.94  Aligned_cols=41  Identities=27%  Similarity=0.428  Sum_probs=29.6

Q ss_pred             HHHHHHHHHhhhcC---CCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945          158 DSIISEVWRCIEDH---NEKVIGLYGMGGVGKTTLLKKLNNKFR  198 (206)
Q Consensus       158 ~~~~~~l~~~L~~~---~~~vI~IvG~~G~GKTTLa~~i~~~~~  198 (206)
                      ...+..+..++...   ...-+-++|++|+|||+||+.+++...
T Consensus       134 ~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~  177 (308)
T 2qgz_A          134 MEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELS  177 (308)
T ss_dssp             HHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHH
Confidence            33455555566541   135788999999999999999988653

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=96.72  E-value=0.00092  Score=53.94  Aligned_cols=26  Identities=27%  Similarity=0.392  Sum_probs=23.1

Q ss_pred             cCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          170 DHNEKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       170 ~~~~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      .+.  ++.|+|++|+|||||++.+....
T Consensus       130 ~G~--i~~I~G~~GsGKTTL~~~l~~~~  155 (349)
T 1pzn_A          130 TQA--ITEVFGEFGSGKTQLAHTLAVMV  155 (349)
T ss_dssp             SSE--EEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CCe--EEEEECCCCCCHHHHHHHHHHHh
Confidence            455  99999999999999999998765

>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*

Probab=96.70  E-value=0.0024  Score=53.85  Aligned_cols=46  Identities=24%  Similarity=0.331  Sum_probs=35.4

Q ss_pred             CCccchHHHHHHHHHhhhc-------------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          152 GKTVGLDSIISEVWRCIED-------------HNEKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~-------------~~~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      ..++|.+..++.|...+..             ....-+-|+|++|+|||+||+.|.+..
T Consensus       204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~  262 (489)
T 3hu3_A          204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET  262 (489)
T ss_dssp             GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHC
T ss_pred             HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHh
Confidence            3478888888777766542             233468899999999999999998764

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=96.69  E-value=0.0011  Score=49.00  Aligned_cols=40  Identities=23%  Similarity=0.076  Sum_probs=21.8

Q ss_pred             HHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          158 DSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       158 ~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      ....+++.........-.|.|+|..|+|||||++.+.+..
T Consensus        15 ~~~~~~m~~~~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~   54 (204)
T 4gzl_A           15 VPRGSHMENLYFQGQAIKCVVVGDGAVGKTCLLISYTTNA   54 (204)
T ss_dssp             ---------------CEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred             ccchhHHHhHhhcCCeEEEEEECcCCCCHHHHHHHHHhCC
Confidence            3344444444444555689999999999999999887653

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=96.68  E-value=0.0005  Score=64.46  Aligned_cols=40  Identities=15%  Similarity=0.308  Sum_probs=31.3

Q ss_pred             HHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCC
Q 037945          161 ISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEH  202 (206)
Q Consensus       161 ~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~  202 (206)
                      ++++...+..++  +++|+|++|+|||||++.+.+..++.+|
T Consensus       406 L~~isl~i~~G~--~~~ivG~sGsGKSTl~~ll~g~~~~~~G  445 (1284)
T 3g5u_A          406 LKGLNLKVKSGQ--TVALVGNSGCGKSTTVQLMQRLYDPLDG  445 (1284)
T ss_dssp             EEEEEEEECTTC--EEEEECCSSSSHHHHHHHTTTSSCCSEE
T ss_pred             eecceEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCe
Confidence            444444455577  9999999999999999999988776544

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=96.67  E-value=0.0032  Score=52.33  Aligned_cols=26  Identities=35%  Similarity=0.577  Sum_probs=22.6

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945          173 EKVIGLYGMGGVGKTTLLKKLNNKFR  198 (206)
Q Consensus       173 ~~vI~IvG~~G~GKTTLa~~i~~~~~  198 (206)
                      ..+|.++|++|+||||++..+.....
T Consensus       100 p~vIlivG~~G~GKTTt~~kLA~~l~  125 (443)
T 3dm5_A          100 PTILLMVGIQGSGKTTTVAKLARYFQ  125 (443)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CeEEEEECcCCCCHHHHHHHHHHHHH
Confidence            56999999999999999998876554

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=96.64  E-value=0.0012  Score=50.09  Aligned_cols=27  Identities=22%  Similarity=0.219  Sum_probs=23.3

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945          172 NEKVIGLYGMGGVGKTTLLKKLNNKFR  198 (206)
Q Consensus       172 ~~~vI~IvG~~G~GKTTLa~~i~~~~~  198 (206)
                      ....|+|+|.+|+|||||++.+.+...
T Consensus        28 ~~~~i~lvG~~g~GKStlin~l~g~~~   54 (239)
T 3lxx_A           28 SQLRIVLVGKTGAGKSATGNSILGRKV   54 (239)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHTSCC
T ss_pred             CceEEEEECCCCCCHHHHHHHHcCCCc
Confidence            455899999999999999999988654

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=96.62  E-value=0.0029  Score=47.09  Aligned_cols=37  Identities=8%  Similarity=0.148  Sum_probs=26.3

Q ss_pred             HHHHHHhhhc-CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          161 ISEVWRCIED-HNEKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       161 ~~~l~~~L~~-~~~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      +..+..++.. ..-+-+.|+|++|+||||+|..+.+..
T Consensus        45 ~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~~l   82 (212)
T 1tue_A           45 LGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFI   82 (212)
T ss_dssp             HHHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence            3444444443 122379999999999999998888765

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=96.60  E-value=0.00057  Score=64.29  Aligned_cols=42  Identities=21%  Similarity=0.358  Sum_probs=33.5

Q ss_pred             HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      .++++...+..++  .|+|||++|+|||||++.+.+-.+|.+|.
T Consensus      1094 VL~~isl~I~~Ge--~vaIVG~SGsGKSTL~~lL~rl~~p~~G~ 1135 (1321)
T 4f4c_A         1094 ILKGLSFSVEPGQ--TLALVGPSGCGKSTVVALLERFYDTLGGE 1135 (1321)
T ss_dssp             SEEEEEEEECTTC--EEEEECSTTSSTTSHHHHHTTSSCCSSSE
T ss_pred             cccceeEEECCCC--EEEEECCCCChHHHHHHHHhcCccCCCCE
Confidence            3445555555677  99999999999999999999988776553

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=96.54  E-value=0.0011  Score=58.16  Aligned_cols=28  Identities=25%  Similarity=0.406  Sum_probs=21.9

Q ss_pred             HHHHHHhhhcCCCeEEEEEcCCCCcHHHHH
Q 037945          161 ISEVWRCIEDHNEKVIGLYGMGGVGKTTLL  190 (206)
Q Consensus       161 ~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa  190 (206)
                      ++++...+..++  +++|+|+||+|||||+
T Consensus        34 L~~vsl~i~~Ge--~~~liGpNGaGKSTLl   61 (670)
T 3ux8_A           34 LKNIDVEIPRGK--LVVLTGLSGSGKSSLA   61 (670)
T ss_dssp             CCSEEEEEETTS--EEEEECSTTSSHHHHH
T ss_pred             eeccEEEECCCC--EEEEECCCCCCHHHHh
Confidence            334444455677  9999999999999997

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=96.52  E-value=0.0015  Score=52.33  Aligned_cols=24  Identities=38%  Similarity=0.585  Sum_probs=21.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          174 KVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       174 ~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      ++|.|+|+.|+|||||+..+....
T Consensus        41 ~lIvI~GPTgsGKTtLa~~LA~~l   64 (339)
T 3a8t_A           41 KLLVLMGATGTGKSRLSIDLAAHF   64 (339)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTTS
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHC
Confidence            589999999999999999998765

>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}

Probab=96.48  E-value=0.0018  Score=51.50  Aligned_cols=25  Identities=40%  Similarity=0.736  Sum_probs=20.6

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHh
Q 037945          171 HNEKVIGLYGMGGVGKTTLLKKLNN  195 (206)
Q Consensus       171 ~~~~vI~IvG~~G~GKTTLa~~i~~  195 (206)
                      ++.+||+|.|-||+||||.+-.+.-
T Consensus        46 ~~aKVIAIaGKGGVGKTTtavNLA~   70 (314)
T 3fwy_A           46 TGAKVFAVYGKGGIGKSTTSSNLSA   70 (314)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCceEEEEECCCccCHHHHHHHHHH
Confidence            4578999999999999998876543

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=96.47  E-value=0.0019  Score=53.39  Aligned_cols=27  Identities=26%  Similarity=0.367  Sum_probs=23.1

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          171 HNEKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       171 ~~~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      ....+|.|+|++|+||||+++.+....
T Consensus       256 ~~~~lIil~G~pGSGKSTla~~L~~~~  282 (416)
T 3zvl_A          256 PNPEVVVAVGFPGAGKSTFIQEHLVSA  282 (416)
T ss_dssp             SSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence            345699999999999999999987654

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=96.46  E-value=0.00097  Score=62.75  Aligned_cols=40  Identities=18%  Similarity=0.286  Sum_probs=31.4

Q ss_pred             HHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCC
Q 037945          161 ISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEH  202 (206)
Q Consensus       161 ~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~  202 (206)
                      ++++...+..++  .++|||+.|+|||||++.+.+..++.+|
T Consensus       434 L~~isl~i~~G~--~vaivG~sGsGKSTll~ll~~~~~~~~G  473 (1321)
T 4f4c_A          434 LRGMNLRVNAGQ--TVALVGSSGCGKSTIISLLLRYYDVLKG  473 (1321)
T ss_dssp             EEEEEEEECTTC--EEEEEECSSSCHHHHHHHHTTSSCCSEE
T ss_pred             eeceEEeecCCc--EEEEEecCCCcHHHHHHHhccccccccC
Confidence            344444455577  9999999999999999999998877544

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=96.44  E-value=0.00089  Score=58.68  Aligned_cols=25  Identities=28%  Similarity=0.492  Sum_probs=20.6

Q ss_pred             hhcCCCeEEEEEcCCCCcHHHHHHHHH
Q 037945          168 IEDHNEKVIGLYGMGGVGKTTLLKKLN  194 (206)
Q Consensus       168 L~~~~~~vI~IvG~~G~GKTTLa~~i~  194 (206)
                      +..++  +++|+|++|+|||||++.+.
T Consensus       345 I~~Ge--~vaIiGpnGsGKSTLl~~i~  369 (670)
T 3ux8_A          345 IPLGT--FVAVTGVSGSGKSTLVNEVL  369 (670)
T ss_dssp             EETTS--EEEEECSTTSSHHHHHTTTH
T ss_pred             ecCCC--EEEEEeeCCCCHHHHHHHHH
Confidence            33466  99999999999999998653

>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}

Probab=96.42  E-value=0.006  Score=49.29  Aligned_cols=24  Identities=25%  Similarity=0.414  Sum_probs=21.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhhc
Q 037945          175 VIGLYGMGGVGKTTLLKKLNNKFR  198 (206)
Q Consensus       175 vI~IvG~~G~GKTTLa~~i~~~~~  198 (206)
                      ++.|.|++|+|||||+..+.....
T Consensus        63 i~~I~GppGsGKSTLal~la~~~~   86 (356)
T 3hr8_A           63 IVEIFGQESSGKTTLALHAIAEAQ   86 (356)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            999999999999999999887643

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=96.42  E-value=0.0018  Score=53.29  Aligned_cols=25  Identities=28%  Similarity=0.449  Sum_probs=21.0

Q ss_pred             hhcCCCeEEEEEcCCCCcHHHHHHHHH
Q 037945          168 IEDHNEKVIGLYGMGGVGKTTLLKKLN  194 (206)
Q Consensus       168 L~~~~~~vI~IvG~~G~GKTTLa~~i~  194 (206)
                      +..+.  ++.|+|++|+|||||+..+.
T Consensus       175 I~~Ge--i~~I~G~sGsGKTTLl~~la  199 (400)
T 3lda_A          175 VETGS--ITELFGEFRTGKSQLCHTLA  199 (400)
T ss_dssp             EETTS--EEEEEESTTSSHHHHHHHHH
T ss_pred             cCCCc--EEEEEcCCCCChHHHHHHHH
Confidence            33456  99999999999999999664

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=96.41  E-value=0.0025  Score=52.71  Aligned_cols=28  Identities=32%  Similarity=0.413  Sum_probs=24.0

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhhhcCC
Q 037945          173 EKVIGLYGMGGVGKTTLLKKLNNKFRDT  200 (206)
Q Consensus       173 ~~vI~IvG~~G~GKTTLa~~i~~~~~~~  200 (206)
                      ..+|+++|++|+||||++..+.......
T Consensus        98 ~~vi~i~G~~GsGKTT~~~~LA~~l~~~  125 (425)
T 2ffh_A           98 RNLWFLVGLQGSGKTTTAAKLALYYKGK  125 (425)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence            3599999999999999999998876543

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=96.41  E-value=0.0014  Score=51.69  Aligned_cols=26  Identities=42%  Similarity=0.503  Sum_probs=22.5

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945          173 EKVIGLYGMGGVGKTTLLKKLNNKFR  198 (206)
Q Consensus       173 ~~vI~IvG~~G~GKTTLa~~i~~~~~  198 (206)
                      ..+|+++|++|+||||++..+.....
T Consensus        98 ~~vi~i~G~~G~GKTT~~~~la~~~~  123 (297)
T 1j8m_F           98 PYVIMLVGVQGTGKTTTAGKLAYFYK  123 (297)
T ss_dssp             SEEEEEECSSCSSTTHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            45999999999999999999887654

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=96.40  E-value=0.0018  Score=47.22  Aligned_cols=29  Identities=34%  Similarity=0.400  Sum_probs=23.2

Q ss_pred             hhcCCCeEEEEEcCCCCcHHHHHHHHHhh
Q 037945          168 IEDHNEKVIGLYGMGGVGKTTLLKKLNNK  196 (206)
Q Consensus       168 L~~~~~~vI~IvG~~G~GKTTLa~~i~~~  196 (206)
                      +.....-.|.|+|.+|+|||||++.+.+.
T Consensus        24 ~~~~~~~ki~v~G~~~vGKSsLi~~l~~~   52 (192)
T 2b6h_A           24 IFGKKQMRILMVGLDAAGKTTILYKLKLG   52 (192)
T ss_dssp             TTTTSCEEEEEEESTTSSHHHHHHHHCSS
T ss_pred             hccCCccEEEEECCCCCCHHHHHHHHHhC
Confidence            33444568999999999999999998653

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=96.38  E-value=0.0026  Score=46.36  Aligned_cols=26  Identities=31%  Similarity=0.574  Sum_probs=22.2

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          172 NEKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       172 ~~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      ....|.|+|..|+|||||++.+.+..
T Consensus        27 ~~~ki~v~G~~~vGKSsli~~l~~~~   52 (196)
T 2atv_A           27 AEVKLAIFGRAGVGKSALVVRFLTKR   52 (196)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCC
Confidence            34579999999999999999987753

>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}

Probab=96.38  E-value=0.00061  Score=56.00  Aligned_cols=23  Identities=22%  Similarity=0.385  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhh
Q 037945          175 VIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       175 vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      +++|+|+||+|||||++.|+.-.
T Consensus        62 ~~~lvG~NGaGKStLl~aI~~l~   84 (415)
T 4aby_A           62 FCAFTGETGAGKSIIVDALGLLL   84 (415)
T ss_dssp             EEEEEESHHHHHHHHTHHHHHHT
T ss_pred             cEEEECCCCCCHHHHHHHHHHHh
Confidence            99999999999999999996544

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=96.35  E-value=0.0024  Score=54.30  Aligned_cols=30  Identities=23%  Similarity=0.287  Sum_probs=25.3

Q ss_pred             hcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCC
Q 037945          169 EDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDT  200 (206)
Q Consensus       169 ~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~  200 (206)
                      ..+.  +++|+|++|+|||||++.+++...+.
T Consensus       279 ~~G~--i~~i~G~~GsGKSTLl~~l~g~~~~~  308 (525)
T 1tf7_A          279 FKDS--IILATGATGTGKTLLVSRFVENACAN  308 (525)
T ss_dssp             ESSC--EEEEEECTTSSHHHHHHHHHHHHHTT
T ss_pred             CCCc--EEEEEeCCCCCHHHHHHHHHHHHHhC
Confidence            3456  99999999999999999998876553

>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*

Probab=96.34  E-value=0.0021  Score=57.08  Aligned_cols=24  Identities=21%  Similarity=0.263  Sum_probs=21.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          174 KVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       174 ~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      .+++|+|+||+|||||++.|.+-.
T Consensus       577 ~i~~I~GpNGsGKSTlLr~iagl~  600 (765)
T 1ewq_A          577 ELVLITGPNMAGKSTFLRQTALIA  600 (765)
T ss_dssp             CEEEEESCSSSSHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCChHHHHHHHHhhh
Confidence            399999999999999999998754

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=96.33  E-value=0.0022  Score=47.43  Aligned_cols=25  Identities=28%  Similarity=0.310  Sum_probs=21.9

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          173 EKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       173 ~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      ...|.|+|.+|+|||||++.+.+..
T Consensus        28 ~~ki~vvG~~~vGKSsLi~~l~~~~   52 (205)
T 1gwn_A           28 KCKIVVVGDSQCGKTALLHVFAKDC   52 (205)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred             eeEEEEECCCCCCHHHHHHHHhcCC
Confidence            4589999999999999999998764

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=96.31  E-value=0.0027  Score=47.61  Aligned_cols=25  Identities=28%  Similarity=0.457  Sum_probs=22.0

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhh
Q 037945          172 NEKVIGLYGMGGVGKTTLLKKLNNK  196 (206)
Q Consensus       172 ~~~vI~IvG~~G~GKTTLa~~i~~~  196 (206)
                      ....|.|+|.+|+|||||++.+.+.
T Consensus        28 ~~~kI~vvG~~~vGKSsLin~l~~~   52 (228)
T 2qu8_A           28 HKKTIILSGAPNVGKSSFMNIVSRA   52 (228)
T ss_dssp             TSEEEEEECSTTSSHHHHHHHHTTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            3458999999999999999998765

>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*

Probab=96.31  E-value=0.0023  Score=57.15  Aligned_cols=23  Identities=17%  Similarity=0.225  Sum_probs=21.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhh
Q 037945          174 KVIGLYGMGGVGKTTLLKKLNNK  196 (206)
Q Consensus       174 ~vI~IvG~~G~GKTTLa~~i~~~  196 (206)
                      .+++|+|+||+|||||++.|.+-
T Consensus       608 ~i~~ItGpNGsGKSTlLr~iagl  630 (800)
T 1wb9_A          608 RMLIITGPNMGGKSTYMRQTALI  630 (800)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             cEEEEECCCCCChHHHHHHHHHH
Confidence            49999999999999999998764

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=96.29  E-value=0.0021  Score=52.10  Aligned_cols=26  Identities=35%  Similarity=0.486  Sum_probs=21.9

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          172 NEKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       172 ~~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      +.++|+|+|.+|+|||||++.+.+..
T Consensus       178 ~~~~V~lvG~~naGKSTLln~L~~~~  203 (364)
T 2qtf_A          178 NIPSIGIVGYTNSGKTSLFNSLTGLT  203 (364)
T ss_dssp             -CCEEEEECBTTSSHHHHHHHHHCC-
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHCCC
Confidence            45679999999999999999998754

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=96.28  E-value=0.0026  Score=46.50  Aligned_cols=27  Identities=30%  Similarity=0.356  Sum_probs=21.9

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          171 HNEKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       171 ~~~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      .....|.|+|..|+|||||++.+.+..
T Consensus        26 ~~~~ki~v~G~~~~GKSsli~~l~~~~   52 (199)
T 2p5s_A           26 QKAYKIVLAGDAAVGKSSFLMRLCKNE   52 (199)
T ss_dssp             --CEEEEEESSTTSSHHHHHHHHHHCC
T ss_pred             CCCeEEEEECcCCCCHHHHHHHHHhCC
Confidence            334589999999999999999987653

>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}

Probab=96.27  E-value=0.0073  Score=50.40  Aligned_cols=42  Identities=24%  Similarity=0.373  Sum_probs=32.1

Q ss_pred             chHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945          156 GLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFR  198 (206)
Q Consensus       156 g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~  198 (206)
                      +....+..+...+.+++ ..+.|.|.+|+||||++..+.....
T Consensus        29 ~Q~~av~~~~~~i~~~~-~~~li~G~aGTGKT~ll~~~~~~l~   70 (459)
T 3upu_A           29 GQKNAFNIVMKAIKEKK-HHVTINGPAGTGATTLTKFIIEALI   70 (459)
T ss_dssp             HHHHHHHHHHHHHHSSS-CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCC-CEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            34556677777776644 3899999999999999998876653

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=96.26  E-value=0.0074  Score=53.56  Aligned_cols=46  Identities=24%  Similarity=0.386  Sum_probs=36.0

Q ss_pred             CCccchHHHHHHHHHhhhc---------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          152 GKTVGLDSIISEVWRCIED---------HNEKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~---------~~~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      ..++|.+..++.+...+..         .....+-++|++|+|||+||+.+.+..
T Consensus       491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l  545 (758)
T 3pxi_A          491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESI  545 (758)
T ss_dssp             TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHH
T ss_pred             CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHh
Confidence            3478988888877777763         112369999999999999999998765

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=96.26  E-value=0.0059  Score=51.65  Aligned_cols=24  Identities=42%  Similarity=0.512  Sum_probs=20.8

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhh
Q 037945          173 EKVIGLYGMGGVGKTTLLKKLNNK  196 (206)
Q Consensus       173 ~~vI~IvG~~G~GKTTLa~~i~~~  196 (206)
                      ..+|+|+|.+|+||||++..+...
T Consensus       101 ~~vI~ivG~~GvGKTTl~~kLA~~  124 (504)
T 2j37_W          101 QNVIMFVGLQGSGKTTTCSKLAYY  124 (504)
T ss_dssp             -EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            569999999999999999998754

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=96.25  E-value=0.0018  Score=52.49  Aligned_cols=26  Identities=31%  Similarity=0.369  Sum_probs=21.6

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhh
Q 037945          171 HNEKVIGLYGMGGVGKTTLLKKLNNK  196 (206)
Q Consensus       171 ~~~~vI~IvG~~G~GKTTLa~~i~~~  196 (206)
                      +-.-.|+|+|.+|+|||||++.+++.
T Consensus        35 ~~~~~I~vvG~~g~GKSTLln~L~~~   60 (361)
T 2qag_A           35 GFEFTLMVVGESGLGKSTLINSLFLT   60 (361)
T ss_dssp             CCEECEEECCCTTSCHHHHHHHHTTC
T ss_pred             CCCEEEEEEcCCCCCHHHHHHHHhCC
Confidence            33345799999999999999998764

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=96.23  E-value=0.0019  Score=53.60  Aligned_cols=25  Identities=44%  Similarity=0.535  Sum_probs=21.7

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          173 EKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       173 ~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      ..+|+|+|++|+||||++..+....
T Consensus        99 ~~vI~ivG~~GvGKTTla~~La~~l  123 (432)
T 2v3c_C           99 QNVILLVGIQGSGKTTTAAKLARYI  123 (432)
T ss_dssp             CCCEEEECCSSSSTTHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHH
Confidence            4599999999999999999887654

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=96.20  E-value=0.0027  Score=47.12  Aligned_cols=24  Identities=38%  Similarity=0.526  Sum_probs=20.6

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhh
Q 037945          173 EKVIGLYGMGGVGKTTLLKKLNNK  196 (206)
Q Consensus       173 ~~vI~IvG~~G~GKTTLa~~i~~~  196 (206)
                      .-.|.|+|.+|+|||||++.+.+.
T Consensus        34 ~~ki~vvG~~~vGKSsli~~l~~~   57 (214)
T 2j1l_A           34 SVKVVLVGDGGCGKTSLLMVFADG   57 (214)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHC-
T ss_pred             eEEEEEECcCCCCHHHHHHHHHcC
Confidence            347999999999999999998764

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...

Probab=96.16  E-value=0.003  Score=50.90  Aligned_cols=36  Identities=22%  Similarity=0.239  Sum_probs=26.1

Q ss_pred             HHHHHHH--hhhcCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          160 IISEVWR--CIEDHNEKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       160 ~~~~l~~--~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      .++.+..  -+..+.  ++.|.|++|+|||||+..+....
T Consensus        48 ~LD~~Lg~GGl~~G~--iv~I~G~pGsGKTtLal~la~~~   85 (349)
T 2zr9_A           48 SLDVALGIGGLPRGR--VIEIYGPESSGKTTVALHAVANA   85 (349)
T ss_dssp             HHHHHTSSSSEETTS--EEEEEESTTSSHHHHHHHHHHHH
T ss_pred             HHHHHhccCCccCCe--EEEEECCCCCCHHHHHHHHHHHH
Confidence            4444433  333455  99999999999999998887543

>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A

Probab=96.13  E-value=0.0046  Score=51.57  Aligned_cols=37  Identities=14%  Similarity=0.174  Sum_probs=29.6

Q ss_pred             HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945          160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFR  198 (206)
Q Consensus       160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~  198 (206)
                      .++++..-+..++  ++.|.|.+|+|||||+..+.....
T Consensus       192 ~LD~~~gGl~~G~--liiI~G~pG~GKTtl~l~ia~~~~  228 (454)
T 2r6a_A          192 ELDRMTSGFQRSD--LIIVAARPSVGKTAFALNIAQNVA  228 (454)
T ss_dssp             HHHHHHSSBCTTC--EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             HHHhhcCCCCCCC--EEEEECCCCCCHHHHHHHHHHHHH
Confidence            4566665566677  999999999999999999877653

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=96.13  E-value=0.0034  Score=46.87  Aligned_cols=23  Identities=35%  Similarity=0.397  Sum_probs=20.4

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHh
Q 037945          173 EKVIGLYGMGGVGKTTLLKKLNN  195 (206)
Q Consensus       173 ~~vI~IvG~~G~GKTTLa~~i~~  195 (206)
                      ...|.|+|.+|+|||||++.+.+
T Consensus        37 ~~kVvlvG~~~vGKSSLl~r~~~   59 (211)
T 2g3y_A           37 YYRVVLIGEQGVGKSTLANIFAG   59 (211)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHh
Confidence            45799999999999999999874

>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A

Probab=96.12  E-value=0.0034  Score=51.26  Aligned_cols=26  Identities=19%  Similarity=0.151  Sum_probs=22.8

Q ss_pred             cCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          170 DHNEKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       170 ~~~~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      .++  .++|+|++|+|||||++.|.+..
T Consensus       173 rGQ--r~~IvG~sG~GKTtLl~~Iar~i  198 (422)
T 3ice_A          173 RGQ--RGLIVAPPKAGKTMLLQNIAQSI  198 (422)
T ss_dssp             TTC--EEEEECCSSSSHHHHHHHHHHHH
T ss_pred             CCc--EEEEecCCCCChhHHHHHHHHHH
Confidence            467  99999999999999999987653

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=96.11  E-value=0.0034  Score=46.05  Aligned_cols=25  Identities=24%  Similarity=0.295  Sum_probs=21.6

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          173 EKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       173 ~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      .-.|.|+|..|+|||||++.+.+..
T Consensus        29 ~~ki~vvG~~~vGKSsli~~l~~~~   53 (201)
T 2hup_A           29 LFKLVLVGDASVGKTCVVQRFKTGA   53 (201)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred             ceEEEEECcCCCCHHHHHHHHhhCC
Confidence            4589999999999999999987643

>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*

Probab=96.10  E-value=0.0041  Score=49.51  Aligned_cols=22  Identities=32%  Similarity=0.525  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhh
Q 037945          175 VIGLYGMGGVGKTTLLKKLNNK  196 (206)
Q Consensus       175 vI~IvG~~G~GKTTLa~~i~~~  196 (206)
                      ++-|+|++|+|||||+..+...
T Consensus       125 viLI~GpPGsGKTtLAlqlA~~  146 (331)
T 2vhj_A          125 MVIVTGKGNSGKTPLVHALGEA  146 (331)
T ss_dssp             EEEEECSCSSSHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHh
Confidence            6789999999999999998764

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=96.09  E-value=0.0046  Score=51.35  Aligned_cols=26  Identities=35%  Similarity=0.469  Sum_probs=22.1

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          172 NEKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       172 ~~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      ..++|.++|.+|+||||++-.+....
T Consensus        99 ~~~vI~ivG~~GvGKTT~a~~LA~~l  124 (433)
T 2xxa_A           99 PPAVVLMAGLQGAGKTTSVGKLGKFL  124 (433)
T ss_dssp             SSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            35699999999999999999887544

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=96.05  E-value=0.0077  Score=46.29  Aligned_cols=26  Identities=31%  Similarity=0.505  Sum_probs=22.5

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          172 NEKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       172 ~~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      ....|+|+|..|+|||||+..+.+..
T Consensus        35 ~~~~I~lvG~~g~GKSSLin~l~~~~   60 (262)
T 3def_A           35 NSMTVLVLGKGGVGKSSTVNSLIGEQ   60 (262)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHTSC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            34589999999999999999998754

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=96.04  E-value=0.0044  Score=46.04  Aligned_cols=23  Identities=30%  Similarity=0.316  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhh
Q 037945          174 KVIGLYGMGGVGKTTLLKKLNNK  196 (206)
Q Consensus       174 ~vI~IvG~~G~GKTTLa~~i~~~  196 (206)
                      -.|.|+|..|+|||||++.+.+.
T Consensus        28 ~ki~vvG~~~vGKSsL~~~l~~~   50 (214)
T 3q3j_B           28 CKLVLVGDVQCGKTAMLQVLAKD   50 (214)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECcCCCCHHHHHHHHhcC
Confidence            47999999999999999998765

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=96.03  E-value=0.0052  Score=55.30  Aligned_cols=45  Identities=33%  Similarity=0.387  Sum_probs=35.1

Q ss_pred             CccchHHHHHHHHHhhhcC---------CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          153 KTVGLDSIISEVWRCIEDH---------NEKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       153 ~~~g~~~~~~~l~~~L~~~---------~~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      .++|.+..+..+...+...         ....+-++|++|+|||+||+.+.+..
T Consensus       559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~  612 (854)
T 1qvr_A          559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATL  612 (854)
T ss_dssp             HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred             ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHh
Confidence            3678888777777766531         12478999999999999999998765

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=95.01  E-value=0.0011  Score=48.75  Aligned_cols=29  Identities=28%  Similarity=0.252  Sum_probs=22.9

Q ss_pred             hhcCCCeEEEEEcCCCCcHHHHHHHHHhh
Q 037945          168 IEDHNEKVIGLYGMGGVGKTTLLKKLNNK  196 (206)
Q Consensus       168 L~~~~~~vI~IvG~~G~GKTTLa~~i~~~  196 (206)
                      +.....-.|.|+|..|+|||||++.+.+.
T Consensus        25 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~   53 (204)
T 3th5_A           25 YFQGQAIKCVVVGDGAVGKTCLLISYTTN   53 (204)
Confidence            34444557999999999999999877654

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=96.02  E-value=0.0021  Score=47.75  Aligned_cols=26  Identities=27%  Similarity=0.332  Sum_probs=22.9

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          172 NEKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       172 ~~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      ....|+|+|..|+|||||++.+.+..
T Consensus        28 ~~~~i~v~G~~~~GKSslin~l~~~~   53 (223)
T 4dhe_A           28 VQPEIAFAGRSNAGKSTAINVLCNQK   53 (223)
T ss_dssp             CSCEEEEEESCHHHHHHHHHHHTTCS
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCCC
Confidence            45589999999999999999998764

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=95.97  E-value=0.0018  Score=53.43  Aligned_cols=23  Identities=30%  Similarity=0.548  Sum_probs=21.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhh
Q 037945          174 KVIGLYGMGGVGKTTLLKKLNNK  196 (206)
Q Consensus       174 ~vI~IvG~~G~GKTTLa~~i~~~  196 (206)
                      ..|+|+|++|+|||||++.+.+.
T Consensus       158 ~~VgLVG~~gAGKSTLL~~Lsg~  180 (416)
T 1udx_A          158 ADVGLVGYPNAGKSSLLAAMTRA  180 (416)
T ss_dssp             CSEEEECCGGGCHHHHHHHHCSS
T ss_pred             CEEEEECCCCCcHHHHHHHHHcC
Confidence            37999999999999999999875

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=95.96  E-value=0.0089  Score=46.13  Aligned_cols=25  Identities=28%  Similarity=0.450  Sum_probs=22.1

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          173 EKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       173 ~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      ...|.++|..|+|||||++.+.+..
T Consensus        39 ~~~I~vvG~~g~GKSSLin~l~~~~   63 (270)
T 1h65_A           39 SLTILVMGKGGVGKSSTVNSIIGER   63 (270)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred             CeEEEEECCCCCCHHHHHHHHhCCC
Confidence            4589999999999999999998754

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*

Probab=95.96  E-value=0.0051  Score=46.82  Aligned_cols=23  Identities=26%  Similarity=0.494  Sum_probs=21.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhh
Q 037945          175 VIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       175 vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      .|.|.|+.|+||||+++.+....
T Consensus        29 ~i~~eG~~GsGKsT~~~~l~~~l   51 (236)
T 3lv8_A           29 FIVIEGLEGAGKSTAIQVVVETL   51 (236)
T ss_dssp             EEEEEESTTSCHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            99999999999999999987654

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=95.95  E-value=0.004  Score=50.26  Aligned_cols=26  Identities=35%  Similarity=0.404  Sum_probs=22.4

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          172 NEKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       172 ~~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      ....|+++|.+|+|||||++.+.+..
T Consensus       166 ~~~~v~lvG~~gvGKSTLin~L~~~~  191 (357)
T 2e87_A          166 EIPTVVIAGHPNVGKSTLLKALTTAK  191 (357)
T ss_dssp             SSCEEEEECSTTSSHHHHHHHHCSSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            34589999999999999999987653

>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}

Probab=95.94  E-value=0.003  Score=54.61  Aligned_cols=44  Identities=16%  Similarity=0.093  Sum_probs=30.3

Q ss_pred             ccchHHHHHHHHHhhhcCCCe-----------EEEEEcCCCCcHHHHHHHHHhhh
Q 037945          154 TVGLDSIISEVWRCIEDHNEK-----------VIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       154 ~~g~~~~~~~l~~~L~~~~~~-----------vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      ++|.+..+..+...|..+..+           -|-++|++|+|||+||+.+.+..
T Consensus       297 I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~  351 (595)
T 3f9v_A          297 IYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVA  351 (595)
T ss_dssp             TSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTC
T ss_pred             hcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhC
Confidence            566665555554444444211           48899999999999999987654

>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}

Probab=95.91  E-value=0.0085  Score=45.21  Aligned_cols=32  Identities=31%  Similarity=0.450  Sum_probs=24.4

Q ss_pred             HHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHH
Q 037945          161 ISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLN  194 (206)
Q Consensus       161 ~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~  194 (206)
                      .++++..+.+++  .+.|+|+.|+||||++..+.
T Consensus        66 q~~~i~~i~~g~--~~~i~g~TGsGKTt~~~~~~   97 (235)
T 3llm_A           66 ESEILEAISQNS--VVIIRGATGCGKTTQVPQFI   97 (235)
T ss_dssp             HHHHHHHHHHCS--EEEEECCTTSSHHHHHHHHH
T ss_pred             HHHHHHHHhcCC--EEEEEeCCCCCcHHhHHHHH
Confidence            345555666677  89999999999998776543

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=95.91  E-value=0.0099  Score=53.02  Aligned_cols=26  Identities=35%  Similarity=0.484  Sum_probs=22.7

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945          173 EKVIGLYGMGGVGKTTLLKKLNNKFR  198 (206)
Q Consensus       173 ~~vI~IvG~~G~GKTTLa~~i~~~~~  198 (206)
                      .+=|-++|++|+|||+||+.|.+...
T Consensus       238 p~GILL~GPPGTGKT~LAraiA~elg  263 (806)
T 3cf2_A          238 PRGILLYGPPGTGKTLIARAVANETG  263 (806)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHTTTT
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhC
Confidence            45789999999999999999998653

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=95.87  E-value=0.013  Score=52.00  Aligned_cols=46  Identities=24%  Similarity=0.249  Sum_probs=35.2

Q ss_pred             CCccchHHHHHHHHHhhhc---------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          152 GKTVGLDSIISEVWRCIED---------HNEKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~---------~~~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      ..++|.+..++.+...+..         .....+-++|++|+|||+||+.+.+..
T Consensus       458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l  512 (758)
T 1r6b_X          458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL  512 (758)
T ss_dssp             TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHh
Confidence            3477888888777766653         123378999999999999999998765

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=95.86  E-value=0.0082  Score=46.36  Aligned_cols=35  Identities=23%  Similarity=0.248  Sum_probs=25.9

Q ss_pred             HHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          162 SEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       162 ~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      +.|...+...- ..++++|.+|+|||||++.+.+..
T Consensus        89 ~~L~~~l~~~~-~~v~~vG~~~vGKSslin~l~~~~  123 (262)
T 3cnl_A           89 VLLKKLSFDRL-ARVLIVGVPNTGKSTIINKLKGKR  123 (262)
T ss_dssp             HHHHHHCCCTT-CEEEEEESTTSSHHHHHHHHHTTC
T ss_pred             HHHHHHHHHhh-hheEEeCCCCCCHHHHHHHHhccc
Confidence            34444444321 489999999999999999998754

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=95.84  E-value=0.013  Score=45.78  Aligned_cols=25  Identities=32%  Similarity=0.438  Sum_probs=21.8

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          173 EKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       173 ~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      ...|+++|.+|+|||||++.+.+..
T Consensus       120 ~~~v~~vG~~nvGKSsliN~l~~~~  144 (282)
T 1puj_A          120 AIRALIIGIPNVGKSTLINRLAKKN  144 (282)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred             CceEEEEecCCCchHHHHHHHhcCc
Confidence            3479999999999999999998754

>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}

Probab=95.83  E-value=0.0079  Score=47.67  Aligned_cols=36  Identities=14%  Similarity=0.137  Sum_probs=27.9

Q ss_pred             HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      .++++..-+..++  ++-|.|.+|+|||||+..+....
T Consensus        57 ~LD~~lgGl~~G~--l~li~G~pG~GKTtl~l~ia~~~   92 (315)
T 3bh0_A           57 ELDRMTYGYKRRN--FVLIAARPSMGKTAFALKQAKNM   92 (315)
T ss_dssp             HHHHHHSSBCTTC--EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             HHHhhcCCCCCCc--EEEEEeCCCCCHHHHHHHHHHHH
Confidence            4555554566677  99999999999999999887543

>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*

Probab=95.83  E-value=0.0062  Score=51.77  Aligned_cols=25  Identities=36%  Similarity=0.453  Sum_probs=21.6

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          173 EKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       173 ~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      ..+|.++|++|+||||+++.+....
T Consensus        35 ~~lIvlvGlpGSGKSTia~~La~~L   59 (520)
T 2axn_A           35 PTVIVMVGLPARGKTYISKKLTRYL   59 (520)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHH
Confidence            4589999999999999999986543

>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*

Probab=95.82  E-value=0.0037  Score=56.59  Aligned_cols=22  Identities=23%  Similarity=0.329  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHh
Q 037945          174 KVIGLYGMGGVGKTTLLKKLNN  195 (206)
Q Consensus       174 ~vI~IvG~~G~GKTTLa~~i~~  195 (206)
                      .+++|.|+||+|||||++.|..
T Consensus       674 ~i~~ItGPNGaGKSTlLr~i~~  695 (918)
T 3thx_B          674 RVMIITGPNMGGKSSYIKQVAL  695 (918)
T ss_dssp             CEEEEESCCCHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCchHHHHHHHHH
Confidence            4999999999999999998754

>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*

Probab=95.80  E-value=0.013  Score=49.62  Aligned_cols=27  Identities=22%  Similarity=0.032  Sum_probs=24.0

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945          172 NEKVIGLYGMGGVGKTTLLKKLNNKFR  198 (206)
Q Consensus       172 ~~~vI~IvG~~G~GKTTLa~~i~~~~~  198 (206)
                      ...+|.+.|+.|+||||+++.+.....
T Consensus       394 ~~~~I~l~GlsGsGKSTIa~~La~~L~  420 (511)
T 1g8f_A          394 QGFSIVLGNSLTVSREQLSIALLSTFL  420 (511)
T ss_dssp             CCEEEEECTTCCSCHHHHHHHHHHHHT
T ss_pred             cceEEEecccCCCCHHHHHHHHHHHHH
Confidence            456899999999999999999988764

>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*

Probab=95.78  E-value=0.005  Score=55.82  Aligned_cols=20  Identities=20%  Similarity=0.172  Sum_probs=19.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHH
Q 037945          174 KVIGLYGMGGVGKTTLLKKL  193 (206)
Q Consensus       174 ~vI~IvG~~G~GKTTLa~~i  193 (206)
                      .+++|.|+||+|||||++.|
T Consensus       663 ~i~~ItGpNGsGKSTlLr~i  682 (934)
T 3thx_A          663 MFHIITGPNMGGKSTYIRQT  682 (934)
T ss_dssp             CEEEEECCTTSSHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHH
Confidence            49999999999999999998

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=95.78  E-value=0.013  Score=48.54  Aligned_cols=43  Identities=21%  Similarity=0.343  Sum_probs=34.4

Q ss_pred             cchHHHHHHHHHhhhc-------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          155 VGLDSIISEVWRCIED-------HNEKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       155 ~g~~~~~~~l~~~L~~-------~~~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      .|.+..++.+...+.+       ++...|+|+|.+|+|||||++.+.+..
T Consensus       150 ~gv~~L~~~i~~~l~~~~~~~~~~~~~ki~lvG~~nvGKSSLin~l~~~~  199 (436)
T 2hjg_A          150 LGLGDLLDAVAEHFKNIPETKYNEEVIQFCLIGRPNVGKSSLVNAMLGEE  199 (436)
T ss_dssp             BTHHHHHHHHHHTGGGCCSSCCCTTCEEEEEECSTTSSHHHHHHHHHTST
T ss_pred             CChHHHHHHHHHhcCccccccccccCcEEEEEcCCCCCHHHHHHHHhCCC
Confidence            4667788888877753       235689999999999999999998754

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=95.78  E-value=0.0064  Score=50.93  Aligned_cols=26  Identities=31%  Similarity=0.392  Sum_probs=22.1

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          172 NEKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       172 ~~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      ...+|.++|+.|+||||+++.+....
T Consensus        38 ~~~~IvlvGlpGsGKSTia~~La~~l   63 (469)
T 1bif_A           38 CPTLIVMVGLPARGKTYISKKLTRYL   63 (469)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHHH
Confidence            34589999999999999999987653

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=95.74  E-value=0.006  Score=45.19  Aligned_cols=23  Identities=26%  Similarity=0.309  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhh
Q 037945          174 KVIGLYGMGGVGKTTLLKKLNNK  196 (206)
Q Consensus       174 ~vI~IvG~~G~GKTTLa~~i~~~  196 (206)
                      +.|.|.|+.|+||||||..+...
T Consensus        35 ~~ilI~GpsGsGKStLA~~La~~   57 (205)
T 2qmh_A           35 LGVLITGDSGVGKSETALELVQR   57 (205)
T ss_dssp             EEEEEECCCTTTTHHHHHHHHTT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHh
Confidence            47999999999999999988654

>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11

Probab=95.68  E-value=0.011  Score=49.43  Aligned_cols=26  Identities=42%  Similarity=0.732  Sum_probs=22.4

Q ss_pred             cCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          170 DHNEKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       170 ~~~~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      .++  .++|+|.+|+|||||++.+....
T Consensus       150 kGq--~~~i~G~sGvGKTtL~~~l~~~~  175 (473)
T 1sky_E          150 KGG--KIGLFGGAGVGKTVLIQELIHNI  175 (473)
T ss_dssp             TTC--EEEEECCSSSCHHHHHHHHHHHH
T ss_pred             cCC--EEEEECCCCCCccHHHHHHHhhh
Confidence            356  89999999999999999887654

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=95.66  E-value=0.0069  Score=48.84  Aligned_cols=25  Identities=24%  Similarity=0.380  Sum_probs=22.4

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhh
Q 037945          172 NEKVIGLYGMGGVGKTTLLKKLNNK  196 (206)
Q Consensus       172 ~~~vI~IvG~~G~GKTTLa~~i~~~  196 (206)
                      .+..|+|+|..|+|||||++.+.+.
T Consensus        33 ~lp~I~vvG~~~sGKSSLln~l~g~   57 (360)
T 3t34_A           33 SLPAIAVVGGQSSGKSSVLESIVGK   57 (360)
T ss_dssp             CCCEEEEECBTTSSHHHHHHHHHTS
T ss_pred             cCCEEEEECCCCCcHHHHHHHHhCC
Confidence            3559999999999999999999884

>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*

Probab=95.59  E-value=0.0068  Score=55.53  Aligned_cols=22  Identities=23%  Similarity=0.247  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhh
Q 037945          174 KVIGLYGMGGVGKTTLLKKLNNK  196 (206)
Q Consensus       174 ~vI~IvG~~G~GKTTLa~~i~~~  196 (206)
                      .+++|.|+||+|||||++.| +-
T Consensus       790 ~i~~ItGpNgsGKSTlLr~i-Gl  811 (1022)
T 2o8b_B          790 YCVLVTGPNMGGKSTLMRQA-GL  811 (1022)
T ss_dssp             CEEEEECCTTSSHHHHHHHH-HH
T ss_pred             cEEEEECCCCCChHHHHHHH-HH
Confidence            59999999999999999998 54

>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A

Probab=95.42  E-value=0.029  Score=43.39  Aligned_cols=35  Identities=20%  Similarity=0.299  Sum_probs=26.6

Q ss_pred             HHHHHhhhcC-C-CeEEEEEcCCCCcHHHHHHHHHhh
Q 037945          162 SEVWRCIEDH-N-EKVIGLYGMGGVGKTTLLKKLNNK  196 (206)
Q Consensus       162 ~~l~~~L~~~-~-~~vI~IvG~~G~GKTTLa~~i~~~  196 (206)
                      .-+..++... . .+-|-++|++|+|||+|+..|.+.
T Consensus        91 ~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~  127 (267)
T 1u0j_A           91 SVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHT  127 (267)
T ss_dssp             HHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhh
Confidence            3355555543 2 347999999999999999999875

>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*

Probab=95.36  E-value=0.011  Score=47.05  Aligned_cols=27  Identities=33%  Similarity=0.512  Sum_probs=22.7

Q ss_pred             hhcCCCeEEEEEcCCCCcHHHHHHHHHhh
Q 037945          168 IEDHNEKVIGLYGMGGVGKTTLLKKLNNK  196 (206)
Q Consensus       168 L~~~~~~vI~IvG~~G~GKTTLa~~i~~~  196 (206)
                      +..+.  ++.|+|++|+|||||+..+...
T Consensus       104 l~~G~--i~~i~G~~GsGKT~la~~la~~  130 (324)
T 2z43_A          104 IETRT--MTEFFGEFGSGKTQLCHQLSVN  130 (324)
T ss_dssp             EETTS--EEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCCCc--EEEEECCCCCCHhHHHHHHHHH
Confidence            33455  9999999999999999988765

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=95.33  E-value=0.0032  Score=56.40  Aligned_cols=23  Identities=30%  Similarity=0.538  Sum_probs=20.0

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHH-HHh
Q 037945          171 HNEKVIGLYGMGGVGKTTLLKK-LNN  195 (206)
Q Consensus       171 ~~~~vI~IvG~~G~GKTTLa~~-i~~  195 (206)
                      ++  +++|+|.+|+|||||++. +++
T Consensus       523 Ge--iv~I~G~nGSGKSTLl~~~L~g  546 (842)
T 2vf7_A          523 GV--MTSVTGVSGSGKSTLVSQALVD  546 (842)
T ss_dssp             SS--EEEEECCTTSSHHHHCCCCCHH
T ss_pred             CC--EEEEEcCCCcCHHHHHHHHHHH
Confidence            55  999999999999999996 553

>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*

Probab=95.31  E-value=0.012  Score=51.04  Aligned_cols=26  Identities=31%  Similarity=0.422  Sum_probs=22.7

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          172 NEKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       172 ~~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      .-.+|.+.|+.|+||||+++.+....
T Consensus        51 ~g~lIvLtGlsGSGKSTlAr~La~~L   76 (630)
T 1x6v_B           51 RGCTVWLTGLSGAGKTTVSMALEEYL   76 (630)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence            34589999999999999999997764

>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}

Probab=95.29  E-value=0.015  Score=46.67  Aligned_cols=36  Identities=11%  Similarity=0.106  Sum_probs=28.2

Q ss_pred             HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      .++++..-+..++  ++.|.|.+|+|||||+..+....
T Consensus        35 ~LD~~~gGl~~G~--LiiIaG~pG~GKTt~al~ia~~~   70 (338)
T 4a1f_A           35 QLDNYTSGFNKGS--LVIIGARPSMGKTSLMMNMVLSA   70 (338)
T ss_dssp             HHHHHHCSBCTTC--EEEEEECTTSCHHHHHHHHHHHH
T ss_pred             HHHHHhcCCCCCc--EEEEEeCCCCCHHHHHHHHHHHH
Confidence            4555555566677  99999999999999999886653

>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}

Probab=95.15  E-value=0.016  Score=48.19  Aligned_cols=36  Identities=8%  Similarity=0.089  Sum_probs=27.7

Q ss_pred             HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      .++++..-+..++  ++.|.|.+|+|||||+..+....
T Consensus       189 ~LD~~lgGl~~G~--l~ii~G~pg~GKT~lal~ia~~~  224 (444)
T 2q6t_A          189 ELDQLIGTLGPGS--LNIIAARPAMGKTAFALTIAQNA  224 (444)
T ss_dssp             HHHHHHCCCCTTC--EEEEEECTTSCHHHHHHHHHHHH
T ss_pred             hhhhhcCCcCCCc--EEEEEeCCCCCHHHHHHHHHHHH
Confidence            4555554455566  99999999999999999887654

>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*

Probab=95.13  E-value=0.014  Score=50.21  Aligned_cols=25  Identities=24%  Similarity=0.242  Sum_probs=22.0

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          173 EKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       173 ~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      ..+|.|.|+.|+||||+++.+....
T Consensus       396 ~~~I~l~GlsGSGKSTiA~~La~~L  420 (573)
T 1m8p_A          396 GFTIFLTGYMNSGKDAIARALQVTL  420 (573)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             ceEEEeecCCCCCHHHHHHHHHHHh
Confidence            3689999999999999999987764

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=95.05  E-value=0.034  Score=45.04  Aligned_cols=40  Identities=20%  Similarity=0.409  Sum_probs=30.2

Q ss_pred             ccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhh
Q 037945          154 TVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNK  196 (206)
Q Consensus       154 ~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~  196 (206)
                      -.|.+..++.+...+. +  ..|+++|..|+|||||.+.+.+.
T Consensus       146 g~gi~~L~~~I~~~~~-~--~~i~~vG~~nvGKStliN~L~~~  185 (369)
T 3ec1_A          146 GIGMAKVMEAINRYRE-G--GDVYVVGCTNVGKSTFINRIIEE  185 (369)
T ss_dssp             TBTHHHHHHHHHHHHT-T--SCEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHhhcc-c--CcEEEEcCCCCchHHHHHHHHhh
Confidence            3456666666655443 3  36999999999999999999986

>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A

Probab=95.05  E-value=0.017  Score=46.28  Aligned_cols=22  Identities=27%  Similarity=0.289  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhh
Q 037945          175 VIGLYGMGGVGKTTLLKKLNNK  196 (206)
Q Consensus       175 vI~IvG~~G~GKTTLa~~i~~~  196 (206)
                      ++.|+|++|+|||||+..+...
T Consensus       124 i~~I~G~~GsGKTtla~~la~~  145 (343)
T 1v5w_A          124 ITEAFGEFRTGKTQLSHTLCVT  145 (343)
T ss_dssp             EEEEECCTTCTHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            9999999999999999988765

>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*

Probab=95.02  E-value=0.018  Score=47.97  Aligned_cols=37  Identities=14%  Similarity=0.200  Sum_probs=28.4

Q ss_pred             HHHHHHHh--hhcCCCeEEEEEcCCCCcHHHHHHHHHhh
Q 037945          160 IISEVWRC--IEDHNEKVIGLYGMGGVGKTTLLKKLNNK  196 (206)
Q Consensus       160 ~~~~l~~~--L~~~~~~vI~IvG~~G~GKTTLa~~i~~~  196 (206)
                      .++.+...  +.+..+.+|+|+|..++|||||+..+++.
T Consensus        52 al~~iL~~~~~~~~~v~vVsV~G~~~~GKStLLN~llg~   90 (447)
T 3q5d_A           52 ALNRILLSEAVRDKEVVAVSVAGAFRKGKSFLMDFMLRY   90 (447)
T ss_dssp             HHHHHHCCTTTTTSBEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             HHHHHHhccccCCCceEEEEEECCCCCcHHHHHHHHhhh
Confidence            44444432  23456889999999999999999999875

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=94.99  E-value=0.018  Score=46.67  Aligned_cols=22  Identities=41%  Similarity=0.542  Sum_probs=19.4

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHH
Q 037945          172 NEKVIGLYGMGGVGKTTLLKKL  193 (206)
Q Consensus       172 ~~~vI~IvG~~G~GKTTLa~~i  193 (206)
                      ....|.|+|.+|+||||+++.+
T Consensus        32 ~~~killlG~~~SGKST~~kq~   53 (362)
T 1zcb_A           32 RLVKILLLGAGESGKSTFLKQM   53 (362)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHH
T ss_pred             CccEEEEECCCCCcHHHHHHHH
Confidence            3558999999999999999985

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=94.99  E-value=0.0057  Score=55.37  Aligned_cols=21  Identities=29%  Similarity=0.640  Sum_probs=19.2

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHH
Q 037945          171 HNEKVIGLYGMGGVGKTTLLKKL  193 (206)
Q Consensus       171 ~~~~vI~IvG~~G~GKTTLa~~i  193 (206)
                      ++  +++|+|.+|+|||||++.+
T Consensus       650 Ge--iv~I~G~nGSGKSTLl~~l  670 (972)
T 2r6f_A          650 GT--FVAVTGVSGSGKSTLVNEV  670 (972)
T ss_dssp             SS--EEECCBCTTSSHHHHHTTT
T ss_pred             CC--EEEEEcCCCCCHHHHHHHH
Confidence            55  9999999999999999985

>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}

Probab=94.87  E-value=0.037  Score=47.28  Aligned_cols=26  Identities=23%  Similarity=0.296  Sum_probs=22.4

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          172 NEKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       172 ~~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      ...+|.+.|+.|+||||+++.+....
T Consensus       371 ~~~~I~l~G~~GsGKSTia~~La~~L  396 (546)
T 2gks_A          371 QGFCVWLTGLPCAGKSTIAEILATML  396 (546)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             cceEEEccCCCCCCHHHHHHHHHHHh
Confidence            34689999999999999999987654

>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A

Probab=94.86  E-value=0.019  Score=46.36  Aligned_cols=35  Identities=20%  Similarity=0.263  Sum_probs=25.4

Q ss_pred             HHHHHHH--hhhcCCCeEEEEEcCCCCcHHHHHHHHHhh
Q 037945          160 IISEVWR--CIEDHNEKVIGLYGMGGVGKTTLLKKLNNK  196 (206)
Q Consensus       160 ~~~~l~~--~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~  196 (206)
                      .++.+..  -+..+.  ++.|.|.+|+|||||+..+...
T Consensus        50 ~LD~~Lg~GGl~~G~--ii~I~G~pGsGKTtLal~la~~   86 (356)
T 1u94_A           50 SLDIALGAGGLPMGR--IVEIYGPESSGKTTLTLQVIAA   86 (356)
T ss_dssp             HHHHHTSSSSEETTS--EEEEECSTTSSHHHHHHHHHHH
T ss_pred             HHHHHhccCCccCCe--EEEEECCCCCCHHHHHHHHHHH
Confidence            4444432  233455  9999999999999999887654

>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}

Probab=94.83  E-value=0.03  Score=45.80  Aligned_cols=33  Identities=21%  Similarity=0.180  Sum_probs=25.9

Q ss_pred             HHHHhhhc---CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          163 EVWRCIED---HNEKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       163 ~l~~~L~~---~~~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      +++..+..   ++  .++|+|..|+|||||++.|.+..
T Consensus       164 raID~l~PigrGQ--R~lIfg~~g~GKT~Ll~~Ia~~i  199 (427)
T 3l0o_A          164 RLIDLFAPIGKGQ--RGMIVAPPKAGKTTILKEIANGI  199 (427)
T ss_dssp             HHHHHHSCCBTTC--EEEEEECTTCCHHHHHHHHHHHH
T ss_pred             hhhhhcccccCCc--eEEEecCCCCChhHHHHHHHHHH
Confidence            34444443   66  99999999999999999888753

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*

Probab=94.79  E-value=0.02  Score=49.30  Aligned_cols=28  Identities=29%  Similarity=0.405  Sum_probs=24.2

Q ss_pred             cCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          170 DHNEKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       170 ~~~~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      +....+|+|+|.+|+|||||++.+.+..
T Consensus        35 ~~~~~~VaivG~pnvGKStLiN~L~g~~   62 (592)
T 1f5n_A           35 TQPMVVVAIVGLYRTGKSYLMNKLAGKK   62 (592)
T ss_dssp             CSBEEEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred             cCCCcEEEEECCCCCCHHHHHHhHcCCC
Confidence            3556789999999999999999998754

>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*

Probab=94.79  E-value=0.034  Score=47.82  Aligned_cols=32  Identities=28%  Similarity=0.359  Sum_probs=24.6

Q ss_pred             HHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          164 VWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       164 l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      .+..+....  ++.|.|++|+||||++..+....
T Consensus       197 Av~~~~~~~--~~~I~G~pGTGKTt~i~~l~~~l  228 (574)
T 3e1s_A          197 VLDQLAGHR--LVVLTGGPGTGKSTTTKAVADLA  228 (574)
T ss_dssp             HHHHHTTCS--EEEEECCTTSCHHHHHHHHHHHH
T ss_pred             HHHHHHhCC--EEEEEcCCCCCHHHHHHHHHHHH
Confidence            344444454  89999999999999999887654

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=94.75  E-value=0.011  Score=47.11  Aligned_cols=23  Identities=39%  Similarity=0.456  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhh
Q 037945          174 KVIGLYGMGGVGKTTLLKKLNNK  196 (206)
Q Consensus       174 ~vI~IvG~~G~GKTTLa~~i~~~  196 (206)
                      -.|.|+|.+|+|||||+..+.+.
T Consensus       166 ~kI~ivG~~~vGKSsLl~~l~~~  188 (329)
T 3o47_A          166 MRILMVGLDAAGKTTILYKLKLG  188 (329)
T ss_dssp             EEEEEEESTTSSHHHHHHHTCSS
T ss_pred             ceEEEECCCCccHHHHHHHHhCC
Confidence            37999999999999999987653

>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}

Probab=94.70  E-value=0.025  Score=47.02  Aligned_cols=36  Identities=14%  Similarity=0.137  Sum_probs=27.8

Q ss_pred             HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      .++++..-+..++  .+-|.|.+|+|||||+-.+....
T Consensus       186 ~LD~~lgGl~~G~--liiIaG~pG~GKTtlal~ia~~~  221 (444)
T 3bgw_A          186 ELDRMTYGYKRRN--FVLIAARPSMGKTAFALKQAKNM  221 (444)
T ss_dssp             HHHHHHSSBCSSC--EEEEEECSSSSHHHHHHHHHHHH
T ss_pred             HHHhhcCCCCCCc--EEEEEeCCCCChHHHHHHHHHHH
Confidence            4555554555667  99999999999999998876654

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=94.68  E-value=0.041  Score=43.24  Aligned_cols=27  Identities=30%  Similarity=0.281  Sum_probs=22.2

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          171 HNEKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       171 ~~~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      ...-.|.|+|..|+|||||+..+.+..
T Consensus       153 ~~~~~i~i~G~~~~GKssli~~~~~~~  179 (332)
T 2wkq_A          153 KELIKCVVVGDGAVGKTCLLISYTTNA  179 (332)
T ss_dssp             TTCEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred             cceeEEEEECCCCCChHHHHHHHHhCC
Confidence            344579999999999999998887653

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=94.58  E-value=0.019  Score=48.78  Aligned_cols=24  Identities=42%  Similarity=0.488  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          174 KVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       174 ~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      -.|+++|.+|+|||||++.+.+..
T Consensus        42 ~kV~lvG~~~vGKSSLl~~l~~~~   65 (535)
T 3dpu_A           42 IKVHLIGDGMAGKTSLLKQLIGET   65 (535)
T ss_dssp             EEEEEESSSCSSHHHHHHHHHC--
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCC
Confidence            479999999999999999987653

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=94.55  E-value=0.046  Score=44.26  Aligned_cols=41  Identities=20%  Similarity=0.332  Sum_probs=30.6

Q ss_pred             ccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          154 TVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       154 ~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      -.|.+..++.|..... +  ..|+++|..|+|||||.+.+.+..
T Consensus       144 g~gi~~L~~~l~~~~~-~--~~i~~vG~~nvGKStliN~L~~~~  184 (368)
T 3h2y_A          144 GQGIAELADAIEYYRG-G--KDVYVVGCTNVGKSTFINRMIKEF  184 (368)
T ss_dssp             CTTHHHHHHHHHHHHT-T--SCEEEEEBTTSSHHHHHHHHHHHH
T ss_pred             CcCHHHHHhhhhhhcc-c--ceEEEecCCCCChhHHHHHHHhhh
Confidence            3466666666655442 3  379999999999999999998863

>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A

Probab=94.55  E-value=0.027  Score=45.84  Aligned_cols=24  Identities=21%  Similarity=0.076  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhhc
Q 037945          175 VIGLYGMGGVGKTTLLKKLNNKFR  198 (206)
Q Consensus       175 vI~IvG~~G~GKTTLa~~i~~~~~  198 (206)
                      -+.|+|++|+|||||++.+.....
T Consensus        37 ~~~i~G~~G~GKs~~~~~~~~~~~   60 (392)
T 4ag6_A           37 NWTILAKPGAGKSFTAKMLLLREY   60 (392)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             ceEEEcCCCCCHHHHHHHHHHHHH
Confidence            578999999999999999876553

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=94.48  E-value=0.05  Score=48.57  Aligned_cols=47  Identities=28%  Similarity=0.394  Sum_probs=34.1

Q ss_pred             CCccchHHHHHHHHHhhhc-------------CCCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945          152 GKTVGLDSIISEVWRCIED-------------HNEKVIGLYGMGGVGKTTLLKKLNNKFR  198 (206)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~-------------~~~~vI~IvG~~G~GKTTLa~~i~~~~~  198 (206)
                      ..+.|.+..++.|...+.-             ...+-|-++|++|+|||.||+.|.+...
T Consensus       477 ~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~  536 (806)
T 3cf2_A          477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ  536 (806)
T ss_dssp             TTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTT
T ss_pred             HHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhC
Confidence            3466777777776665431             1234578999999999999999998753

>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*

Probab=94.47  E-value=0.024  Score=44.82  Aligned_cols=22  Identities=27%  Similarity=0.382  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhh
Q 037945          175 VIGLYGMGGVGKTTLLKKLNNK  196 (206)
Q Consensus       175 vI~IvG~~G~GKTTLa~~i~~~  196 (206)
                      ++-|.|++|+|||||+..+...
T Consensus       100 i~~i~G~~gsGKT~la~~la~~  121 (322)
T 2i1q_A          100 VTEFAGVFGSGKTQIMHQSCVN  121 (322)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            9999999999999999988754

>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}

Probab=94.34  E-value=0.03  Score=42.08  Aligned_cols=24  Identities=29%  Similarity=0.371  Sum_probs=19.9

Q ss_pred             hcCCCeEEEEEcCCCCcHHHHHHHHH
Q 037945          169 EDHNEKVIGLYGMGGVGKTTLLKKLN  194 (206)
Q Consensus       169 ~~~~~~vI~IvG~~G~GKTTLa~~i~  194 (206)
                      ..+.  ++-|.|.+|+|||||+..+.
T Consensus        28 ~~G~--l~~i~G~pG~GKT~l~l~~~   51 (251)
T 2zts_A           28 PEGT--TVLLTGGTGTGKTTFAAQFI   51 (251)
T ss_dssp             ETTC--EEEEECCTTSSHHHHHHHHH
T ss_pred             CCCe--EEEEEeCCCCCHHHHHHHHH
Confidence            3455  99999999999999997653

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=94.32  E-value=0.028  Score=47.01  Aligned_cols=23  Identities=26%  Similarity=0.413  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhh
Q 037945          175 VIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       175 vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      .|+|+|.+|+|||||++.+.+..
T Consensus       226 kV~ivG~~nvGKSSLln~L~~~~  248 (462)
T 3geh_A          226 KVAIVGRPNVGKSSLLNAWSQSD  248 (462)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHhCCC
Confidence            59999999999999999998764

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=94.31  E-value=0.025  Score=48.33  Aligned_cols=25  Identities=20%  Similarity=0.268  Sum_probs=22.4

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          173 EKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       173 ~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      ...|+|+|..|+|||||++.+.+..
T Consensus        65 ~~~V~vvG~~n~GKSTLIN~Llg~~   89 (550)
T 2qpt_A           65 KPMVLVAGQYSTGKTSFIQYLLEQE   89 (550)
T ss_dssp             CCEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCc
Confidence            4599999999999999999998764

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=94.31  E-value=0.0029  Score=46.27  Aligned_cols=23  Identities=35%  Similarity=0.453  Sum_probs=19.9

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHh
Q 037945          173 EKVIGLYGMGGVGKTTLLKKLNN  195 (206)
Q Consensus       173 ~~vI~IvG~~G~GKTTLa~~i~~  195 (206)
                      .-.|.|+|..|+|||||++.+.+
T Consensus        33 ~~ki~vvG~~~~GKSsli~~l~~   55 (199)
T 3l0i_B           33 LFKLLLIGDSGVGKSCLLLRFAD   55 (199)
T ss_dssp             EEEEEEECCTTSCCTTTTTSSBC
T ss_pred             ceEEEEECCCCCCHHHHHHHHhc
Confidence            45789999999999999987764

>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1

Probab=94.24  E-value=0.029  Score=45.46  Aligned_cols=35  Identities=23%  Similarity=0.258  Sum_probs=25.0

Q ss_pred             HHHHHHH--hhhcCCCeEEEEEcCCCCcHHHHHHHHHhh
Q 037945          160 IISEVWR--CIEDHNEKVIGLYGMGGVGKTTLLKKLNNK  196 (206)
Q Consensus       160 ~~~~l~~--~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~  196 (206)
                      .++.+..  -+..+.  ++-|.|++|+|||||+..+...
T Consensus        61 ~LD~~Lg~GGl~~G~--li~I~G~pGsGKTtlal~la~~   97 (366)
T 1xp8_A           61 SLDLALGVGGIPRGR--ITEIYGPESGGKTTLALAIVAQ   97 (366)
T ss_dssp             HHHHHTSSSSEETTS--EEEEEESTTSSHHHHHHHHHHH
T ss_pred             HHHHHhCCCCccCCc--EEEEEcCCCCChHHHHHHHHHH
Confidence            4444433  333455  8999999999999999877654

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=94.20  E-value=0.018  Score=46.26  Aligned_cols=26  Identities=19%  Similarity=0.310  Sum_probs=22.8

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          172 NEKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       172 ~~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      .+..|+|+|..|+|||||+..+.+..
T Consensus        30 ~~~~I~vvG~~~~GKSSLln~L~g~~   55 (353)
T 2x2e_A           30 DLPQIAVVGGQSAGKSSVLENFVGRD   55 (353)
T ss_dssp             CCCEEEEECBTTSSHHHHHHTTTTSC
T ss_pred             CCCeEEEECCCCCCHHHHHHHHhCCC
Confidence            45689999999999999999998754

>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1

Probab=94.17  E-value=0.026  Score=45.86  Aligned_cols=25  Identities=28%  Similarity=0.122  Sum_probs=21.1

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          173 EKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       173 ~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      ...|.|-|+-|+||||+++.+....
T Consensus        49 ~~fIt~EG~dGsGKTT~~~~Lae~L   73 (376)
T 1of1_A           49 LLRVYIDGPHGMGKTTTTQLLVALG   73 (376)
T ss_dssp             EEEEEECSSTTSSHHHHHHHHHC--
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHh
Confidence            4479999999999999999998764

>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}

Probab=94.00  E-value=0.041  Score=45.66  Aligned_cols=44  Identities=23%  Similarity=0.249  Sum_probs=30.3

Q ss_pred             CCccchHHHHHHHHHhhhc-----CCCeEEEEEcCCCCcHHHHHHHHHh
Q 037945          152 GKTVGLDSIISEVWRCIED-----HNEKVIGLYGMGGVGKTTLLKKLNN  195 (206)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~-----~~~~vI~IvG~~G~GKTTLa~~i~~  195 (206)
                      +.++.....+..+...+.+     ...++..|.|.+|+||||+++.+.+
T Consensus       135 t~l~~~~~~l~~l~~~~~~~~~~~~~~~v~~I~G~aGsGKTt~I~~~~~  183 (446)
T 3vkw_A          135 SVVYSDMAKLRTLRRLLKDGEPHVSSAKVVLVDGVPGCGKTKEILSRVN  183 (446)
T ss_dssp             GSCCHHHHHHHHHHTTCBTTBCCCCCSEEEEEEECTTSCHHHHHHHHCC
T ss_pred             chhhccHHHHHHHHHHHhhhccccccccEEEEEcCCCCCHHHHHHHHhc
Confidence            3455544445555555322     3567999999999999999988764

>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}

Probab=93.89  E-value=0.045  Score=44.31  Aligned_cols=26  Identities=23%  Similarity=0.324  Sum_probs=21.1

Q ss_pred             CCCeEEEEEc-CCCCcHHHHHHHHHhh
Q 037945          171 HNEKVIGLYG-MGGVGKTTLLKKLNNK  196 (206)
Q Consensus       171 ~~~~vI~IvG-~~G~GKTTLa~~i~~~  196 (206)
                      +..++|+|+| -||+||||++-.+...
T Consensus       141 ~~~kvIav~s~KGGvGKTT~a~nLA~~  167 (373)
T 3fkq_A          141 DKSSVVIFTSPCGGVGTSTVAAACAIA  167 (373)
T ss_dssp             TSCEEEEEECSSTTSSHHHHHHHHHHH
T ss_pred             CCceEEEEECCCCCChHHHHHHHHHHH
Confidence            3468999986 8999999999877544

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=93.77  E-value=0.076  Score=44.18  Aligned_cols=42  Identities=21%  Similarity=0.382  Sum_probs=32.1

Q ss_pred             cchHHHHHHHHHhhhc-------CCCeEEEEEcCCCCcHHHHHHHHHhh
Q 037945          155 VGLDSIISEVWRCIED-------HNEKVIGLYGMGGVGKTTLLKKLNNK  196 (206)
Q Consensus       155 ~g~~~~~~~l~~~L~~-------~~~~vI~IvG~~G~GKTTLa~~i~~~  196 (206)
                      .|.++.++.+...+..       .....|+++|.+|+|||||+..+.+.
T Consensus       170 ~gv~~L~~~i~~~l~~~~~~~~~~~~~ki~ivG~~~vGKSslin~l~~~  218 (456)
T 4dcu_A          170 LGLGDLLDAVAEHFKNIPETKYNEEVIQFCLIGRPNVGKSSLVNAMLGE  218 (456)
T ss_dssp             TTHHHHHHHHHTTGGGSCSSCCCTTCEEEEEECSTTSSHHHHHHHHHTS
T ss_pred             cchHHHHHHHHhhcccccccccccccceeEEecCCCCCHHHHHHHHhCC
Confidence            4566677777666542       23568999999999999999998864

>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...

Probab=93.73  E-value=0.069  Score=44.65  Aligned_cols=26  Identities=46%  Similarity=0.717  Sum_probs=23.0

Q ss_pred             cCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          170 DHNEKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       170 ~~~~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      .++  .++|+|..|+|||||++.+.+..
T Consensus       152 kGQ--r~~Ifgg~G~GKT~L~~~i~~~~  177 (482)
T 2ck3_D          152 KGG--KIGLFGGAGVGKTVLIMELINNV  177 (482)
T ss_dssp             TTC--EEEEEECTTSSHHHHHHHHHHHT
T ss_pred             cCC--eeeeecCCCCChHHHHHHHHHhh
Confidence            367  99999999999999999987764

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=93.73  E-value=0.03  Score=50.70  Aligned_cols=17  Identities=29%  Similarity=0.638  Sum_probs=15.9

Q ss_pred             EEEEEcCCCCcHHHHHH
Q 037945          175 VIGLYGMGGVGKTTLLK  191 (206)
Q Consensus       175 vI~IvG~~G~GKTTLa~  191 (206)
                      +++|+|++|+|||||+.
T Consensus       612 iv~I~G~SGSGKSTLl~  628 (916)
T 3pih_A          612 FVCVTGVSGSGKSSLVM  628 (916)
T ss_dssp             EEEEECSTTSSHHHHHH
T ss_pred             EEEEEccCCCChhhhHH
Confidence            89999999999999973

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=93.68  E-value=0.029  Score=45.05  Aligned_cols=23  Identities=39%  Similarity=0.625  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhh
Q 037945          174 KVIGLYGMGGVGKTTLLKKLNNK  196 (206)
Q Consensus       174 ~vI~IvG~~G~GKTTLa~~i~~~  196 (206)
                      ..|+|+|.+|+|||||++.+.+.
T Consensus       159 a~V~lvG~~nvGKSTLln~L~~~  181 (342)
T 1lnz_A          159 ADVGLVGFPSVGKSTLLSVVSSA  181 (342)
T ss_dssp             CCEEEESSTTSSHHHHHHHSEEE
T ss_pred             CeeeeeCCCCCCHHHHHHHHHcC
Confidence            46899999999999999998764

>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*

Probab=93.59  E-value=0.077  Score=47.26  Aligned_cols=34  Identities=21%  Similarity=0.297  Sum_probs=25.3

Q ss_pred             HHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhh
Q 037945          161 ISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNK  196 (206)
Q Consensus       161 ~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~  196 (206)
                      .+.|...+..++  ++.|+|++|+||||++..+...
T Consensus        99 ~~~i~~~l~~~~--~vii~gpTGSGKTtllp~ll~~  132 (773)
T 2xau_A           99 RDEFLKLYQNNQ--IMVFVGETGSGKTTQIPQFVLF  132 (773)
T ss_dssp             HHHHHHHHHHCS--EEEEECCTTSSHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCC--eEEEECCCCCCHHHHHHHHHHH
Confidence            344555566676  8999999999999977766443

>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}

Probab=93.57  E-value=0.036  Score=43.12  Aligned_cols=25  Identities=28%  Similarity=0.392  Sum_probs=19.9

Q ss_pred             CeEEEEEc---CCCCcHHHHHHHHHhhh
Q 037945          173 EKVIGLYG---MGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       173 ~~vI~IvG---~~G~GKTTLa~~i~~~~  197 (206)
                      .++|+|++   -||+||||++-.+....
T Consensus        34 ~~~i~v~~~s~KGGvGKTT~a~nLA~~l   61 (298)
T 2oze_A           34 NEAIVILNNYFKGGVGKSKLSTMFAYLT   61 (298)
T ss_dssp             CSCEEEEECCSSSSSSHHHHHHHHHHHH
T ss_pred             CcEEEEEeccCCCCchHHHHHHHHHHHH
Confidence            34788886   89999999998876543

>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}

Probab=93.55  E-value=0.045  Score=43.51  Aligned_cols=21  Identities=14%  Similarity=0.026  Sum_probs=18.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHh
Q 037945          175 VIGLYGMGGVGKTTLLKKLNN  195 (206)
Q Consensus       175 vI~IvG~~G~GKTTLa~~i~~  195 (206)
                      ++-|.|++|+|||||+-.+..
T Consensus        30 iteI~G~pGsGKTtL~Lq~~~   50 (333)
T 3io5_A           30 LLILAGPSKSFKSNFGLTMVS   50 (333)
T ss_dssp             EEEEEESSSSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999776543

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=93.47  E-value=0.073  Score=46.81  Aligned_cols=25  Identities=24%  Similarity=0.134  Sum_probs=22.0

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          173 EKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       173 ~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      ...|+|+|..|+|||||++.+.+..
T Consensus        69 ~~~V~VvG~~naGKSSLlNaLlg~~   93 (695)
T 2j69_A           69 VFRLLVLGDMKRGKSTFLNALIGEN   93 (695)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHTSS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCC
Confidence            3479999999999999999998754

>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}

Probab=93.38  E-value=0.016  Score=49.16  Aligned_cols=23  Identities=22%  Similarity=0.341  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhh
Q 037945          174 KVIGLYGMGGVGKTTLLKKLNNK  196 (206)
Q Consensus       174 ~vI~IvG~~G~GKTTLa~~i~~~  196 (206)
                      .+..|+|.+|+|||||+..|+--
T Consensus        61 g~n~i~G~NGaGKS~lleAl~~l   83 (517)
T 4ad8_A           61 GFCAFTGETGAGKSIIVDALGLL   83 (517)
T ss_dssp             SEEEEEESHHHHHHHHTHHHHHH
T ss_pred             CeEEEEcCCCCCHHHHHHHHHHH
Confidence            38999999999999999998643

>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}

Probab=93.30  E-value=0.12  Score=40.58  Aligned_cols=29  Identities=17%  Similarity=0.259  Sum_probs=22.6

Q ss_pred             hcCCCeEEEEEcC-CCCcHHHHHHHHHhhh
Q 037945          169 EDHNEKVIGLYGM-GGVGKTTLLKKLNNKF  197 (206)
Q Consensus       169 ~~~~~~vI~IvG~-~G~GKTTLa~~i~~~~  197 (206)
                      .+...++|.|.|. +|+||||++-.+....
T Consensus       100 ~~~~~kvI~vts~kgG~GKTtva~nLA~~l  129 (299)
T 3cio_A          100 METENNILMITGATPDSGKTFVSSTLAAVI  129 (299)
T ss_dssp             SSCSCCEEEEEESSSSSCHHHHHHHHHHHH
T ss_pred             cCCCCeEEEEECCCCCCChHHHHHHHHHHH
Confidence            3455679999986 7899999998776543

>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*

Probab=93.28  E-value=0.12  Score=39.93  Aligned_cols=28  Identities=25%  Similarity=0.357  Sum_probs=22.0

Q ss_pred             cCCCeEEEEEcC-CCCcHHHHHHHHHhhh
Q 037945          170 DHNEKVIGLYGM-GGVGKTTLLKKLNNKF  197 (206)
Q Consensus       170 ~~~~~vI~IvG~-~G~GKTTLa~~i~~~~  197 (206)
                      +...++|.|.|. +|+||||++-.+....
T Consensus        79 ~~~~kvI~vts~kgG~GKTt~a~nLA~~l  107 (271)
T 3bfv_A           79 DSAVQSIVITSEAPGAGKSTIAANLAVAY  107 (271)
T ss_dssp             TCCCCEEEEECSSTTSSHHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCcHHHHHHHHHHHH
Confidence            355679999976 7899999998776543

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=93.19  E-value=0.035  Score=46.60  Aligned_cols=22  Identities=32%  Similarity=0.386  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhh
Q 037945          175 VIGLYGMGGVGKTTLLKKLNNK  196 (206)
Q Consensus       175 vI~IvG~~G~GKTTLa~~i~~~  196 (206)
                      .|+|+|.+|+|||||++.+.+.
T Consensus       235 kV~ivG~~nvGKSSLln~L~~~  256 (476)
T 3gee_A          235 STVIAGKPNAGKSTLLNTLLGQ  256 (476)
T ss_dssp             EEEEECCTTSSHHHHHHHCC--
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5999999999999999998765

>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*

Probab=93.16  E-value=0.069  Score=44.42  Aligned_cols=38  Identities=13%  Similarity=0.250  Sum_probs=28.1

Q ss_pred             HHHHHHHHHh--hhcCCCeEEEEEcCCCCcHHHHHHHHHh
Q 037945          158 DSIISEVWRC--IEDHNEKVIGLYGMGGVGKTTLLKKLNN  195 (206)
Q Consensus       158 ~~~~~~l~~~--L~~~~~~vI~IvG~~G~GKTTLa~~i~~  195 (206)
                      +..++.|...  +.+..+.||+|+|+.++|||||+..+..
T Consensus        50 ~eAl~~iL~~~~i~~~~v~vvsv~G~~~~gks~l~N~ll~   89 (457)
T 4ido_A           50 ETALNRILLSEAVRDKEVVAVSVAGAFRKGKSFLMDFMLR   89 (457)
T ss_dssp             HHHHHHHHSSTTTTTSBEEEEEEEEBTTSSHHHHHHHHHH
T ss_pred             HHHHHHHHhccccCCCceEEEEEECCCCCchhHHHHHHHH
Confidence            3445545433  3456788999999999999999997763

>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2

Probab=93.05  E-value=0.045  Score=46.10  Aligned_cols=35  Identities=14%  Similarity=0.137  Sum_probs=26.2

Q ss_pred             HHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          161 ISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       161 ~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      ++++..-+..+.  ++.|.|.+|+|||||+..+....
T Consensus       232 LD~~lgGl~~G~--l~li~G~pG~GKT~lal~~a~~~  266 (503)
T 1q57_A          232 INDKTLGARGGE--VIMVTSGSGMVMSTFVRQQALQW  266 (503)
T ss_dssp             HHHHHCCCCTTC--EEEEEESSCHHHHHHHHHHHHHH
T ss_pred             hhHhhcccCCCe--EEEEeecCCCCchHHHHHHHHHH
Confidence            344443445566  89999999999999998876654

>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=93.05  E-value=0.047  Score=44.39  Aligned_cols=26  Identities=38%  Similarity=0.569  Sum_probs=22.3

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          172 NEKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       172 ~~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      +.-.|+|||.+.+|||||.+.+-+..
T Consensus        71 g~a~V~ivG~PNvGKSTL~n~Lt~~~   96 (376)
T 4a9a_A           71 GVASVGFVGFPSVGKSTLLSKLTGTE   96 (376)
T ss_dssp             SSEEEEEECCCCHHHHHHHHHHHSBC
T ss_pred             CCCeEEEECCCCCCHHHHHHHHhCCC
Confidence            34589999999999999999998753

>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2

Probab=92.89  E-value=0.063  Score=42.48  Aligned_cols=21  Identities=24%  Similarity=0.316  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHh
Q 037945          175 VIGLYGMGGVGKTTLLKKLNN  195 (206)
Q Consensus       175 vI~IvG~~G~GKTTLa~~i~~  195 (206)
                      -+.|.|.+|+|||||+..+..
T Consensus       146 ~vl~~G~sG~GKSt~a~~l~~  166 (314)
T 1ko7_A          146 GVLITGDSGIGKSETALELIK  166 (314)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHh
Confidence            689999999999999998875

>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*

Probab=92.88  E-value=0.11  Score=44.85  Aligned_cols=23  Identities=35%  Similarity=0.408  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhh
Q 037945          174 KVIGLYGMGGVGKTTLLKKLNNK  196 (206)
Q Consensus       174 ~vI~IvG~~G~GKTTLa~~i~~~  196 (206)
                      +.+.|.|++|+||||++..+...
T Consensus       165 ~~~vi~G~pGTGKTt~l~~ll~~  187 (608)
T 1w36_D          165 RISVISGGPGTGKTTTVAKLLAA  187 (608)
T ss_dssp             SEEEEECCTTSTHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCCHHHHHHHHHHH
Confidence            38999999999999998876544

>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*

Probab=92.41  E-value=0.15  Score=43.64  Aligned_cols=26  Identities=19%  Similarity=0.198  Sum_probs=23.0

Q ss_pred             cCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          170 DHNEKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       170 ~~~~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      .++  .++|.|..|+|||+|+..|.+..
T Consensus       231 rGq--r~~Ifgg~g~GKT~L~~~ia~~~  256 (600)
T 3vr4_A          231 KGG--AAAVPGPFGAGKTVVQHQIAKWS  256 (600)
T ss_dssp             TTC--EEEEECCTTSCHHHHHHHHHHHS
T ss_pred             CCC--EEeeecCCCccHHHHHHHHHhcc
Confidence            367  99999999999999999998753

>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A

Probab=92.39  E-value=0.086  Score=42.94  Aligned_cols=26  Identities=31%  Similarity=0.234  Sum_probs=20.8

Q ss_pred             CCCeEEEEE-cCCCCcHHHHHHHHHhh
Q 037945          171 HNEKVIGLY-GMGGVGKTTLLKKLNNK  196 (206)
Q Consensus       171 ~~~~vI~Iv-G~~G~GKTTLa~~i~~~  196 (206)
                      ...++|+|+ |-||+||||++-.+...
T Consensus       106 ~~~~vIav~s~KGGvGKTT~a~nLA~~  132 (398)
T 3ez2_A          106 SEAYVIFISNLKGGVSKTVSTVSLAHA  132 (398)
T ss_dssp             CSCEEEEECCSSSSSSHHHHHHHHHHH
T ss_pred             CCCeEEEEEeCCCCccHHHHHHHHHHH
Confidence            346789987 78899999998877654

>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}

Probab=92.34  E-value=0.19  Score=39.11  Aligned_cols=37  Identities=14%  Similarity=0.211  Sum_probs=25.6

Q ss_pred             HHHHHHhhhcCCCeEEEEEcC-CCCcHHHHHHHHHhhh
Q 037945          161 ISEVWRCIEDHNEKVIGLYGM-GGVGKTTLLKKLNNKF  197 (206)
Q Consensus       161 ~~~l~~~L~~~~~~vI~IvG~-~G~GKTTLa~~i~~~~  197 (206)
                      ...|.....+...++|+|+|. +|+||||++-.+....
T Consensus        80 rt~l~~~~~~~~~kvI~vts~kgG~GKTtva~nLA~~l  117 (286)
T 3la6_A           80 RTSLHFAMMQAQNNVLMMTGVSPSIGMTFVCANLAAVI  117 (286)
T ss_dssp             HHHHHHHSTTTTCCEEEEEESSSSSSHHHHHHHHHHHH
T ss_pred             HHHHhhhccCCCCeEEEEECCCCCCcHHHHHHHHHHHH
Confidence            333433334456679999886 6899999998876544

>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A

Probab=92.14  E-value=0.18  Score=43.79  Aligned_cols=33  Identities=21%  Similarity=0.251  Sum_probs=21.8

Q ss_pred             HHHHHHhhhcCCCeEEEEEcCCCCcHHHH-HHHHHh
Q 037945          161 ISEVWRCIEDHNEKVIGLYGMGGVGKTTL-LKKLNN  195 (206)
Q Consensus       161 ~~~l~~~L~~~~~~vI~IvG~~G~GKTTL-a~~i~~  195 (206)
                      .+-+...|...+  +.-|+||+|+||||. +..|+.
T Consensus       195 ~~AV~~al~~~~--~~lI~GPPGTGKT~ti~~~I~~  228 (646)
T 4b3f_X          195 KEAVLFALSQKE--LAIIHGPPGTGKTTTVVEIILQ  228 (646)
T ss_dssp             HHHHHHHHHCSS--EEEEECCTTSCHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCC--ceEEECCCCCCHHHHHHHHHHH
Confidence            333444455555  778999999999964 444544

>3gqb_A V-type ATP synthase alpha chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_A* 3a5d_A 3j0j_A* 1um2_C

Probab=91.93  E-value=0.14  Score=43.54  Aligned_cols=25  Identities=20%  Similarity=0.151  Sum_probs=22.5

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          171 HNEKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       171 ~~~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      ++  .++|.|..|+|||+|+..|.+..
T Consensus       221 Gq--r~~Ifg~~g~GKT~l~~~ia~~~  245 (578)
T 3gqb_A          221 GG--TAAIPGPFGSGKSVTQQSLAKWS  245 (578)
T ss_dssp             TC--EEEECCCTTSCHHHHHHHHHHHS
T ss_pred             CC--EEeeeCCCCccHHHHHHHHHhcc
Confidence            67  99999999999999999998753

>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A

Probab=91.87  E-value=0.22  Score=43.13  Aligned_cols=22  Identities=23%  Similarity=0.218  Sum_probs=18.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhh
Q 037945          175 VIGLYGMGGVGKTTLLKKLNNK  196 (206)
Q Consensus       175 vI~IvG~~G~GKTTLa~~i~~~  196 (206)
                      ...|.|++|+||||++..+...
T Consensus       197 ~~li~GppGTGKT~~~~~~i~~  218 (624)
T 2gk6_A          197 LSLIQGPPGTGKTVTSATIVYH  218 (624)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             CeEEECCCCCCHHHHHHHHHHH
Confidence            7889999999999987766543

>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*

Probab=91.85  E-value=0.091  Score=44.14  Aligned_cols=26  Identities=46%  Similarity=0.718  Sum_probs=22.7

Q ss_pred             cCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          170 DHNEKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       170 ~~~~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      .++  .++|.|..|+|||+|++.+.+..
T Consensus       164 kGq--r~gIfgg~GvGKT~L~~~l~~~~  189 (498)
T 1fx0_B          164 RGG--KIGLFGGAGVGKTVLIMELINNI  189 (498)
T ss_dssp             TTC--CEEEEECSSSSHHHHHHHHHHHT
T ss_pred             cCC--eEEeecCCCCCchHHHHHHHHHH
Confidence            366  89999999999999999887764

>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*

Probab=91.80  E-value=0.095  Score=43.75  Aligned_cols=27  Identities=4%  Similarity=0.181  Sum_probs=23.5

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhhcC
Q 037945          171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRD  199 (206)
Q Consensus       171 ~~~~vI~IvG~~G~GKTTLa~~i~~~~~~  199 (206)
                      ++  .++|.|..|+|||||+..|......
T Consensus       152 GQ--r~~Ifgg~G~GKt~Ll~~Ia~~~~~  178 (469)
T 2c61_A          152 GQ--KLPIFSASGLPHNEIALQIARQASV  178 (469)
T ss_dssp             TC--BCCEEECTTSCHHHHHHHHHHHCBC
T ss_pred             CC--EEEEECCCCCCHHHHHHHHHHHHhh
Confidence            66  8999999999999999999887543

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=91.79  E-value=0.092  Score=45.48  Aligned_cols=25  Identities=24%  Similarity=0.274  Sum_probs=21.2

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhh
Q 037945          172 NEKVIGLYGMGGVGKTTLLKKLNNK  196 (206)
Q Consensus       172 ~~~vI~IvG~~G~GKTTLa~~i~~~  196 (206)
                      ..-.|+|+|..|+|||||+..+.+.
T Consensus       166 ~~lkV~ivG~~n~GKSTLin~Ll~~  190 (611)
T 3izq_1          166 PHLSFVVLGHVDAGKSTLMGRLLYD  190 (611)
T ss_dssp             CCCEEEEECCSSSCHHHHHHHHHSC
T ss_pred             CceEEEEEECCCCCHHHHHHHHHHh
Confidence            3558999999999999999988644

>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}

Probab=91.77  E-value=0.13  Score=44.39  Aligned_cols=24  Identities=21%  Similarity=0.192  Sum_probs=20.6

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHh
Q 037945          172 NEKVIGLYGMGGVGKTTLLKKLNN  195 (206)
Q Consensus       172 ~~~vI~IvG~~G~GKTTLa~~i~~  195 (206)
                      ....|+|+|..++|||||+..+..
T Consensus       176 ~~~~I~iiG~~d~GKSTLi~~Ll~  199 (592)
T 3mca_A          176 PVVHLVVTGHVDSGKSTMLGRIMF  199 (592)
T ss_dssp             CEEEEEEECCSSSTHHHHHHHHHH
T ss_pred             CccEEEEEcCCCCCHHHHHHHHHH
Confidence            455799999999999999998754

>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A

Probab=91.70  E-value=0.12  Score=44.07  Aligned_cols=25  Identities=24%  Similarity=0.291  Sum_probs=22.4

Q ss_pred             cCCCeEEEEEcCCCCcHHHHHHHHHhh
Q 037945          170 DHNEKVIGLYGMGGVGKTTLLKKLNNK  196 (206)
Q Consensus       170 ~~~~~vI~IvG~~G~GKTTLa~~i~~~  196 (206)
                      .++  .++|.|..|+|||+|++.|.+.
T Consensus       226 kGq--r~~I~g~~g~GKT~L~~~ia~~  250 (588)
T 3mfy_A          226 KGG--TAAIPGPAGSGKTVTQHQLAKW  250 (588)
T ss_dssp             TTC--EEEECSCCSHHHHHHHHHHHHH
T ss_pred             cCC--eEEeecCCCCCHHHHHHHHHhc
Confidence            367  9999999999999999998764

>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A

Probab=91.53  E-value=0.13  Score=39.29  Aligned_cols=26  Identities=35%  Similarity=0.383  Sum_probs=19.3

Q ss_pred             CCCeEEEEE-cCCCCcHHHHHHHHHhh
Q 037945          171 HNEKVIGLY-GMGGVGKTTLLKKLNNK  196 (206)
Q Consensus       171 ~~~~vI~Iv-G~~G~GKTTLa~~i~~~  196 (206)
                      ...++|+|+ +-||+||||++-.+...
T Consensus        25 ~~~~vI~v~s~kGGvGKTT~a~~LA~~   51 (267)
T 3k9g_A           25 KKPKIITIASIKGGVGKSTSAIILATL   51 (267)
T ss_dssp             -CCEEEEECCSSSSSCHHHHHHHHHHH
T ss_pred             CCCeEEEEEeCCCCchHHHHHHHHHHH
Confidence            345688885 56789999999877543

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=91.45  E-value=0.098  Score=43.87  Aligned_cols=26  Identities=23%  Similarity=0.239  Sum_probs=22.0

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhh
Q 037945          171 HNEKVIGLYGMGGVGKTTLLKKLNNK  196 (206)
Q Consensus       171 ~~~~vI~IvG~~G~GKTTLa~~i~~~  196 (206)
                      ...-.|+|+|..|+|||||+..+.+.
T Consensus        31 k~~~ki~iiG~~~~GKSTLi~~Ll~~   56 (483)
T 3p26_A           31 LPHLSFVVLGHVDAGKSTLMGRLLYD   56 (483)
T ss_dssp             CCEEEEEEESCGGGTHHHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHh
Confidence            44557899999999999999988655

>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*

Probab=91.26  E-value=0.12  Score=43.06  Aligned_cols=27  Identities=7%  Similarity=0.165  Sum_probs=23.4

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhhcC
Q 037945          171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRD  199 (206)
Q Consensus       171 ~~~~vI~IvG~~G~GKTTLa~~i~~~~~~  199 (206)
                      ++  .++|.|..|+|||||+..|.+....
T Consensus       151 GQ--r~~Ifgg~G~GKt~L~~~Ia~~~~~  177 (465)
T 3vr4_D          151 GQ--KLPVFSGSGLPHKELAAQIARQATV  177 (465)
T ss_dssp             TC--BCCEEECTTSCHHHHHHHHHHHCBC
T ss_pred             CC--EEEEeCCCCcChHHHHHHHHHHHHh
Confidence            56  8999999999999999999887543

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*

Probab=91.18  E-value=0.039  Score=46.41  Aligned_cols=23  Identities=39%  Similarity=0.481  Sum_probs=21.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhh
Q 037945          175 VIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       175 vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      .|+|+|.+|+|||||++.+.+..
T Consensus       245 kV~ivG~pnvGKSSLln~L~~~~  267 (482)
T 1xzp_A          245 RMVIVGKPNVGKSTLLNRLLNED  267 (482)
T ss_dssp             EEEEECCHHHHTCHHHHHHHHHT
T ss_pred             EEEEECcCCCcHHHHHHHHHCCC
Confidence            78999999999999999998874

>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*

Probab=91.15  E-value=0.1  Score=43.46  Aligned_cols=26  Identities=4%  Similarity=0.198  Sum_probs=23.0

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945          171 HNEKVIGLYGMGGVGKTTLLKKLNNKFR  198 (206)
Q Consensus       171 ~~~~vI~IvG~~G~GKTTLa~~i~~~~~  198 (206)
                      ++  .++|.|..|+|||||+..|.+...
T Consensus       147 GQ--r~~Ifgg~G~GKt~L~~~Ia~~~~  172 (464)
T 3gqb_B          147 GQ--KLPIFSGSGLPANEIAAQIARQAT  172 (464)
T ss_dssp             TC--BCCEEEETTSCHHHHHHHHHHHCB
T ss_pred             CC--EEEEecCCCCCchHHHHHHHHHHH
Confidence            56  899999999999999999987754

>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*

Probab=91.08  E-value=0.34  Score=39.37  Aligned_cols=43  Identities=19%  Similarity=0.176  Sum_probs=28.5

Q ss_pred             ccchHHHHHHHHHhhh---cCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          154 TVGLDSIISEVWRCIE---DHNEKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       154 ~~g~~~~~~~l~~~L~---~~~~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      ++|......++...+.   ..+.. |-|.|..|+|||++|+.|+...
T Consensus       139 ~ig~s~~m~~l~~~i~~~a~~~~~-vli~Ge~GtGK~~lAr~ih~~s  184 (387)
T 1ny5_A          139 YVFESPKMKEILEKIKKISCAECP-VLITGESGVGKEVVARLIHKLS  184 (387)
T ss_dssp             CCCCSHHHHHHHHHHHHHTTCCSC-EEEECSTTSSHHHHHHHHHHHS
T ss_pred             hhhccHHhhHHHHHHHHhcCCCCC-eEEecCCCcCHHHHHHHHHHhc
Confidence            4444444444444333   34444 4899999999999999998764

>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A

Probab=90.93  E-value=0.079  Score=44.30  Aligned_cols=26  Identities=23%  Similarity=0.157  Sum_probs=21.7

Q ss_pred             cCCCeEEEEEcCCCCcHHHHHHHHHh
Q 037945          170 DHNEKVIGLYGMGGVGKTTLLKKLNN  195 (206)
Q Consensus       170 ~~~~~vI~IvG~~G~GKTTLa~~i~~  195 (206)
                      ......|+|+|..++|||||+..+..
T Consensus        40 ~k~~~~i~iiG~vd~GKSTLi~~Ll~   65 (467)
T 1r5b_A           40 GKEHVNIVFIGHVDAGKSTLGGNILF   65 (467)
T ss_dssp             CCEEEEEEEEECGGGTHHHHHHHHHH
T ss_pred             CCCeeEEEEEECCCCCHHHHHHHHHH
Confidence            44556899999999999999988754

>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A

Probab=90.75  E-value=0.083  Score=43.13  Aligned_cols=26  Identities=31%  Similarity=0.235  Sum_probs=13.2

Q ss_pred             CCCeEEEEE-cCCCCcHHHHHHHHHhh
Q 037945          171 HNEKVIGLY-GMGGVGKTTLLKKLNNK  196 (206)
Q Consensus       171 ~~~~vI~Iv-G~~G~GKTTLa~~i~~~  196 (206)
                      +..++|+|+ |-||+||||++-.+...
T Consensus       109 ~~~~vIav~s~KGGvGKTT~a~nLA~~  135 (403)
T 3ez9_A          109 KSPYVIFVVNLKGGVSKTVSTVTLAHA  135 (403)
T ss_dssp             CSCEEEEECCC--------CHHHHHHH
T ss_pred             CCceEEEEEcCCCCchHHHHHHHHHHH
Confidence            456789987 78999999988877654

>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2

Probab=90.62  E-value=0.14  Score=40.45  Aligned_cols=21  Identities=33%  Similarity=0.389  Sum_probs=18.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHh
Q 037945          175 VIGLYGMGGVGKTTLLKKLNN  195 (206)
Q Consensus       175 vI~IvG~~G~GKTTLa~~i~~  195 (206)
                      =+.|.|.+|+||||||-.+..
T Consensus       149 gvli~G~sG~GKStlal~l~~  169 (312)
T 1knx_A          149 GVLLTGRSGIGKSECALDLIN  169 (312)
T ss_dssp             EEEEEESSSSSHHHHHHHHHT
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            588999999999999987654

>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A

Probab=90.44  E-value=0.32  Score=43.52  Aligned_cols=22  Identities=23%  Similarity=0.218  Sum_probs=18.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhh
Q 037945          175 VIGLYGMGGVGKTTLLKKLNNK  196 (206)
Q Consensus       175 vI~IvG~~G~GKTTLa~~i~~~  196 (206)
                      +..|.|++|+||||++..+...
T Consensus       373 ~~lI~GppGTGKT~ti~~~i~~  394 (800)
T 2wjy_A          373 LSLIQGPPGTGKTVTSATIVYH  394 (800)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEEEcCCCCCHHHHHHHHHHH
Confidence            7889999999999987766544

>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...

Probab=90.17  E-value=0.26  Score=41.50  Aligned_cols=27  Identities=22%  Similarity=0.252  Sum_probs=22.0

Q ss_pred             cCCCeEEEEEcCCCCcHHHH-HHHHHhhhc
Q 037945          170 DHNEKVIGLYGMGGVGKTTL-LKKLNNKFR  198 (206)
Q Consensus       170 ~~~~~vI~IvG~~G~GKTTL-a~~i~~~~~  198 (206)
                      .++  .++|+|..|+|||+| +..|.+...
T Consensus       161 rGQ--R~~I~g~~g~GKT~Lal~~I~~q~~  188 (510)
T 2ck3_A          161 RGQ--RELIIGDRQTGKTSIAIDTIINQKR  188 (510)
T ss_dssp             TTC--BCEEEESTTSSHHHHHHHHHHHTHH
T ss_pred             cCC--EEEEecCCCCCchHHHHHHHHHHHh
Confidence            366  899999999999999 567776543

>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*

Probab=90.06  E-value=0.19  Score=48.42  Aligned_cols=28  Identities=25%  Similarity=0.357  Sum_probs=23.2

Q ss_pred             hhcCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          168 IEDHNEKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       168 L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      +..+.  +|-|.|++|+|||||+..+....
T Consensus       729 l~~G~--lVlI~G~PG~GKTtLal~lA~~a  756 (1706)
T 3cmw_A          729 LPMGR--IVEIYGPESSGKTTLTLQVIAAA  756 (1706)
T ss_dssp             EETTS--EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             cCCCc--eEEEECCCCCCcHHHHHHHHHHH
Confidence            33455  99999999999999999987654

>3czq_A Putative polyphosphate kinase 2; structural genomics, APC6299, PSI-2, structure initiative; HET: MSE GOL; 2.23A {Sinorhizobium meliloti}

Probab=90.02  E-value=0.55  Score=36.89  Aligned_cols=30  Identities=10%  Similarity=0.120  Sum_probs=25.8

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhhcCC
Q 037945          171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDT  200 (206)
Q Consensus       171 ~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~  200 (206)
                      +...+|.+=|+-|+||+|.++.|+....+.
T Consensus        84 ~~~vlIvfEG~DgAGKgt~Ik~L~e~Ldpr  113 (304)
T 3czq_A           84 GKRVMAVFEGRDAAGKGGAIHATTANMNPR  113 (304)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHTTSCTT
T ss_pred             CCCeEEEEeCCCCCCHHHHHHHHHHHhccc
Confidence            445588999999999999999999988764

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}

Probab=89.93  E-value=0.035  Score=45.89  Aligned_cols=26  Identities=23%  Similarity=0.350  Sum_probs=21.3

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhh
Q 037945          171 HNEKVIGLYGMGGVGKTTLLKKLNNK  196 (206)
Q Consensus       171 ~~~~vI~IvG~~G~GKTTLa~~i~~~  196 (206)
                      .....|+|+|..|+|||||++.+.+.
T Consensus        32 ~~~~kI~IvG~~~vGKSTLin~L~~~   57 (423)
T 3qq5_A           32 GFRRYIVVAGRRNVGKSSFMNALVGQ   57 (423)
T ss_dssp             CCCEEEEEECSCSTTTTTTTTSSCC-
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHcC
Confidence            34568999999999999999877654

>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}

Probab=89.83  E-value=0.23  Score=41.82  Aligned_cols=26  Identities=19%  Similarity=0.190  Sum_probs=21.9

Q ss_pred             cCCCeEEEEEcCCCCcHHHH-HHHHHhhh
Q 037945          170 DHNEKVIGLYGMGGVGKTTL-LKKLNNKF  197 (206)
Q Consensus       170 ~~~~~vI~IvG~~G~GKTTL-a~~i~~~~  197 (206)
                      .++  .++|+|..|+||||| +..|.+..
T Consensus       174 rGQ--R~~I~g~~g~GKT~Lal~~I~~~~  200 (515)
T 2r9v_A          174 RGQ--RELIIGDRQTGKTAIAIDTIINQK  200 (515)
T ss_dssp             TTC--BEEEEEETTSSHHHHHHHHHHTTT
T ss_pred             cCC--EEEEEcCCCCCccHHHHHHHHHhh
Confidence            366  999999999999999 56787754

>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B

Probab=89.64  E-value=0.24  Score=41.66  Aligned_cols=25  Identities=24%  Similarity=0.227  Sum_probs=21.6

Q ss_pred             CCCeEEEEEcCCCCcHHHH-HHHHHhhh
Q 037945          171 HNEKVIGLYGMGGVGKTTL-LKKLNNKF  197 (206)
Q Consensus       171 ~~~~vI~IvG~~G~GKTTL-a~~i~~~~  197 (206)
                      ++  .++|+|..|+|||+| +..|.+..
T Consensus       162 GQ--R~~Ifg~~g~GKT~Lal~~I~~~~  187 (502)
T 2qe7_A          162 GQ--RELIIGDRQTGKTTIAIDTIINQK  187 (502)
T ss_dssp             TC--BCEEEECSSSCHHHHHHHHHHGGG
T ss_pred             CC--EEEEECCCCCCchHHHHHHHHHhh
Confidence            66  899999999999999 56887764

>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*

Probab=89.62  E-value=0.22  Score=47.97  Aligned_cols=24  Identities=29%  Similarity=0.479  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          174 KVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       174 ~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      +++-|+|++|+|||+||+.+...-
T Consensus      1083 ~~~l~~G~~g~GKT~la~~~~~~~ 1106 (1706)
T 3cmw_A         1083 RIVEIYGPESSGKTTLTLQVIAAA 1106 (1706)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CEEEEEcCCCCChHHHHHHHHHHh
Confidence            368899999999999999987643

>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*

Probab=89.57  E-value=0.2  Score=42.34  Aligned_cols=21  Identities=14%  Similarity=0.145  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHh
Q 037945          175 VIGLYGMGGVGKTTLLKKLNN  195 (206)
Q Consensus       175 vI~IvG~~G~GKTTLa~~i~~  195 (206)
                      -+.|.|..|+||||+++.+..
T Consensus       169 HlLIaG~TGSGKSt~L~~li~  189 (512)
T 2ius_A          169 HLLVAGTTGSGASVGVNAMIL  189 (512)
T ss_dssp             SEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            688999999999999998754

>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*

Probab=89.32  E-value=0.24  Score=40.69  Aligned_cols=23  Identities=30%  Similarity=0.530  Sum_probs=18.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhh
Q 037945          174 KVIGLYGMGGVGKTTLLKKLNNK  196 (206)
Q Consensus       174 ~vI~IvG~~G~GKTTLa~~i~~~  196 (206)
                      .=+.|+|+.|+|||++++.+...
T Consensus        54 ~h~~i~G~tGsGKs~~~~~li~~   76 (437)
T 1e9r_A           54 RHLLVNGATGTGKSVLLRELAYT   76 (437)
T ss_dssp             GCEEEEECTTSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHH
Confidence            36899999999999998765543

>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}

Probab=89.27  E-value=0.24  Score=48.39  Aligned_cols=23  Identities=30%  Similarity=0.460  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhh
Q 037945          175 VIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       175 vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      .|-|+|++|+||||||..+....
T Consensus      1429 ~vll~GppGtGKT~LA~ala~ea 1451 (2050)
T 3cmu_A         1429 IVEIYGPESSGKTTLTLQVIAAA 1451 (2050)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            99999999999999998886653

>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}

Probab=89.22  E-value=0.44  Score=42.58  Aligned_cols=29  Identities=17%  Similarity=0.140  Sum_probs=20.5

Q ss_pred             HHHhhhcCCCeEEEEEcCCCCcHHHHHHHHH
Q 037945          164 VWRCIEDHNEKVIGLYGMGGVGKTTLLKKLN  194 (206)
Q Consensus       164 l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~  194 (206)
                      .+..+..+.  ...|.|++|+||||++..+.
T Consensus       368 Av~~~l~~~--~~lI~GppGTGKT~~i~~~i  396 (802)
T 2xzl_A          368 AVSHVLQRP--LSLIQGPPGTGKTVTSATIV  396 (802)
T ss_dssp             HHHHHTTCS--EEEEECSTTSSHHHHHHHHH
T ss_pred             HHHHHhcCC--CEEEECCCCCCHHHHHHHHH
Confidence            333333444  78899999999998876554

>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*

Probab=88.99  E-value=0.26  Score=42.03  Aligned_cols=23  Identities=30%  Similarity=0.401  Sum_probs=20.2

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHH
Q 037945          172 NEKVIGLYGMGGVGKTTLLKKLN  194 (206)
Q Consensus       172 ~~~vI~IvG~~G~GKTTLa~~i~  194 (206)
                      ..+-|+|+|..+.|||||+-.+.
T Consensus        30 r~RNiaIiaHvdaGKTTLtE~lL   52 (548)
T 3vqt_A           30 RRRTFAIISHPDAGKTTLTEKLL   52 (548)
T ss_dssp             TEEEEEEECCTTSSHHHHHHHHH
T ss_pred             ccceEEEEeCCCCCHHHHHHHHH
Confidence            35689999999999999999874

>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A

Probab=88.94  E-value=0.63  Score=37.52  Aligned_cols=44  Identities=23%  Similarity=0.268  Sum_probs=29.0

Q ss_pred             ccchHHHHHHHHHhh---hcCCCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945          154 TVGLDSIISEVWRCI---EDHNEKVIGLYGMGGVGKTTLLKKLNNKFR  198 (206)
Q Consensus       154 ~~g~~~~~~~l~~~L---~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~  198 (206)
                      ++|......++...+   ...+. -+-|.|.+|+||+++|+.|+....
T Consensus       131 ~ig~s~~~~~~~~~~~~~a~~~~-~vli~GesGtGKe~lAr~ih~~s~  177 (368)
T 3dzd_A          131 FVGEHPKILEIKRLIPKIAKSKA-PVLITGESGTGKEIVARLIHRYSG  177 (368)
T ss_dssp             CCCCSHHHHHHHHHHHHHHTSCS-CEEEECCTTSSHHHHHHHHHHHHC
T ss_pred             ccccchHHHHHHhhhhhhhccch-hheEEeCCCchHHHHHHHHHHhcc
Confidence            556544444443333   33333 466999999999999999987653

>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}

Probab=88.35  E-value=0.39  Score=35.87  Aligned_cols=23  Identities=22%  Similarity=0.330  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCcHHH-HHHHHHhhh
Q 037945          175 VIGLYGMGGVGKTT-LLKKLNNKF  197 (206)
Q Consensus       175 vI~IvG~~G~GKTT-La~~i~~~~  197 (206)
                      +.-|.|+-|+|||| |.+.+++..
T Consensus        30 I~vitG~M~sGKTT~Llr~~~r~~   53 (219)
T 3e2i_A           30 IECITGSMFSGKSEELIRRLRRGI   53 (219)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            78889999999999 777776543

>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...

Probab=88.23  E-value=0.32  Score=39.11  Aligned_cols=21  Identities=38%  Similarity=0.623  Sum_probs=18.0

Q ss_pred             CeEEEEEcCCCCcHHHHHHHH
Q 037945          173 EKVIGLYGMGGVGKTTLLKKL  193 (206)
Q Consensus       173 ~~vI~IvG~~G~GKTTLa~~i  193 (206)
                      ...+-+.|.|++||||++|.+
T Consensus        32 ~~klLlLG~geSGKST~~KQm   52 (353)
T 1cip_A           32 EVKLLLLGAGESGKSTIVKQM   52 (353)
T ss_dssp             EEEEEEECSTTSSHHHHHHHH
T ss_pred             cceEEEEcCCCCCchhHHHHH
Confidence            447889999999999998864

>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A

Probab=88.09  E-value=0.42  Score=40.24  Aligned_cols=25  Identities=24%  Similarity=0.198  Sum_probs=21.1

Q ss_pred             cCCCeEEEEEcCCCCcHHHHH-HHHHhh
Q 037945          170 DHNEKVIGLYGMGGVGKTTLL-KKLNNK  196 (206)
Q Consensus       170 ~~~~~vI~IvG~~G~GKTTLa-~~i~~~  196 (206)
                      .++  .++|.|..|+|||+|+ ..|.+.
T Consensus       161 rGQ--R~~Ifg~~g~GKT~l~l~~I~n~  186 (513)
T 3oaa_A          161 RGQ--RELIIGDRQTGKTALAIDAIINQ  186 (513)
T ss_dssp             TTC--BCEEEESSSSSHHHHHHHHHHTT
T ss_pred             cCC--EEEeecCCCCCcchHHHHHHHhh
Confidence            366  8999999999999995 677764

>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A

Probab=87.50  E-value=0.63  Score=41.35  Aligned_cols=26  Identities=19%  Similarity=0.310  Sum_probs=23.5

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          172 NEKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       172 ~~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      ++..|+|+|..++|||||+..+.+..
T Consensus        50 ~lp~I~vvG~~saGKSSllnaL~g~~   75 (772)
T 3zvr_A           50 DLPQIAVVGGQSAGKSSVLENFVGRD   75 (772)
T ss_dssp             CCSEEEEEECTTTCHHHHHHHHHSSC
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            57799999999999999999998853

>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}

Probab=87.35  E-value=0.45  Score=46.63  Aligned_cols=37  Identities=19%  Similarity=0.241  Sum_probs=28.3

Q ss_pred             HHHHHHH--hhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945          160 IISEVWR--CIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFR  198 (206)
Q Consensus       160 ~~~~l~~--~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~  198 (206)
                      .++++..  -+..++  ++-|.|.+|+|||||+..+.....
T Consensus       719 eLD~llggGGl~~G~--lilIaG~PG~GKTtLalqlA~~~a  757 (2050)
T 3cmu_A          719 SLDIALGAGGLPMGR--IVEIYGPESSGKTTLTLQVIAAAQ  757 (2050)
T ss_dssp             HHHHHHSSSSEETTS--EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             HHHHHhccCCcCCCc--EEEEEcCCCCCHHHHHHHHHHHHH
Confidence            4555553  455566  999999999999999999887654

>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*

Probab=86.88  E-value=0.82  Score=39.17  Aligned_cols=35  Identities=34%  Similarity=0.472  Sum_probs=23.0

Q ss_pred             HHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhh
Q 037945          162 SEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNK  196 (206)
Q Consensus       162 ~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~  196 (206)
                      +++...+......++-+.|.+|+||||++-.+...
T Consensus       316 ~~~~~~~~~~~~~~~~~~~~~g~Gktt~a~~lA~~  350 (589)
T 1ihu_A          316 SALVDDIARNEHGLIMLMGKGGVGKTTMAAAIAVR  350 (589)
T ss_dssp             HHHHHHHHTTSCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             hhhhhhhhccCCeEEEEecCCCCChhhHHHHHHHH
Confidence            34444333333446667899999999998776544

>2olr_A Phosphoenolpyruvate carboxykinase; carbon dioxide, lyase; HET: ATP; 1.60A {Escherichia coli K12} SCOP: c.91.1.1 c.109.1.1 PDB: 1k3c_A* 1k3d_A* 1aq2_A* 2olq_A* 1os1_A* 2pxz_X* 1ayl_A* 2py7_X* 1oen_A 1ylh_A* 1ygg_A*

Probab=86.63  E-value=0.36  Score=40.86  Aligned_cols=18  Identities=44%  Similarity=0.743  Sum_probs=16.1

Q ss_pred             eEEEEEcCCCCcHHHHHH
Q 037945          174 KVIGLYGMGGVGKTTLLK  191 (206)
Q Consensus       174 ~vI~IvG~~G~GKTTLa~  191 (206)
                      .++.+.|.+|+|||||..
T Consensus       242 ~~~lffGlSGtGKTTLs~  259 (540)
T 2olr_A          242 DVAVFFGLSGTGKTTLST  259 (540)
T ss_dssp             CEEEEECSTTSSHHHHHC
T ss_pred             CEEEEEccCCCCHHHHhc
Confidence            488999999999999974

>1j3b_A ATP-dependent phosphoenolpyruvate carboxykinase; adenosine triphosphate, T thermophilus; 2.00A {Thermus thermophilus} SCOP: c.91.1.1 c.109.1.1 PDB: 1xkv_A* 2pc9_A*

Probab=86.62  E-value=0.28  Score=41.50  Aligned_cols=19  Identities=42%  Similarity=0.712  Sum_probs=16.4

Q ss_pred             eEEEEEcCCCCcHHHHHHH
Q 037945          174 KVIGLYGMGGVGKTTLLKK  192 (206)
Q Consensus       174 ~vI~IvG~~G~GKTTLa~~  192 (206)
                      .++.+.|++|+|||||+..
T Consensus       226 ~~~~ffGlSGtGKTtLs~~  244 (529)
T 1j3b_A          226 DVAVFFGLSGTGKTTLSTD  244 (529)
T ss_dssp             CEEEEEECTTSCHHHHTCB
T ss_pred             cEEEEEccccCChhhHhhc
Confidence            4888899999999999753

>1ytm_A Phosphoenolpyruvate carboxykinase [ATP], phosphoenolpyruvate; domain closure, nucleotide binding; HET: ATP; 2.20A {Anaerobiospirillum succiniciproducens} PDB: 1yvy_A

Probab=86.37  E-value=0.38  Score=40.74  Aligned_cols=18  Identities=39%  Similarity=0.663  Sum_probs=16.2

Q ss_pred             eEEEEEcCCCCcHHHHHH
Q 037945          174 KVIGLYGMGGVGKTTLLK  191 (206)
Q Consensus       174 ~vI~IvG~~G~GKTTLa~  191 (206)
                      .++.+.|.+|+|||||..
T Consensus       236 ~~~~ffGlSGtGKTTLs~  253 (532)
T 1ytm_A          236 NTAIFFGLSGTGKTTLST  253 (532)
T ss_dssp             SEEEEECCTTSSHHHHHC
T ss_pred             eEEEEEecCCCCHHHHhh
Confidence            489999999999999984

>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*

Probab=86.33  E-value=0.29  Score=41.23  Aligned_cols=25  Identities=20%  Similarity=0.141  Sum_probs=21.3

Q ss_pred             CCCeEEEEEcCCCCcHHHH-HHHHHhhh
Q 037945          171 HNEKVIGLYGMGGVGKTTL-LKKLNNKF  197 (206)
Q Consensus       171 ~~~~vI~IvG~~G~GKTTL-a~~i~~~~  197 (206)
                      ++  .++|+|..|+|||+| +..|.+..
T Consensus       163 GQ--R~~Ifg~~g~GKT~Lal~~I~~~~  188 (507)
T 1fx0_A          163 GQ--RELIIGDRQTGKTAVATDTILNQQ  188 (507)
T ss_dssp             TC--BCBEEESSSSSHHHHHHHHHHTCC
T ss_pred             CC--EEEEecCCCCCccHHHHHHHHHhh
Confidence            55  899999999999999 56887754

>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A

Probab=86.28  E-value=0.6  Score=47.10  Aligned_cols=22  Identities=32%  Similarity=0.360  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhh
Q 037945          175 VIGLYGMGGVGKTTLLKKLNNK  196 (206)
Q Consensus       175 vI~IvG~~G~GKTTLa~~i~~~  196 (206)
                      -+-++|++|+|||+||+.+...
T Consensus      1269 ~vLL~GPpGtGKT~la~~~l~~ 1290 (2695)
T 4akg_A         1269 GIILCGPPGSGKTMIMNNALRN 1290 (2695)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEECCCCCCHHHHHHHHHhc
Confidence            7889999999999999766554

>1ii2_A Phosphoenolpyruvate carboxykinase; phosphate binding loop, lyase; 2.00A {Trypanosoma cruzi} SCOP: c.91.1.1 c.109.1.1

Probab=86.19  E-value=0.4  Score=40.59  Aligned_cols=18  Identities=44%  Similarity=0.737  Sum_probs=16.2

Q ss_pred             eEEEEEcCCCCcHHHHHH
Q 037945          174 KVIGLYGMGGVGKTTLLK  191 (206)
Q Consensus       174 ~vI~IvG~~G~GKTTLa~  191 (206)
                      .++.+.|.+|+|||||..
T Consensus       214 ~~~~ffGlSGtGKTTLs~  231 (524)
T 1ii2_A          214 DVTVFFGLSGTGKTTLSA  231 (524)
T ss_dssp             CEEEEECCTTSSHHHHHC
T ss_pred             CEEEEEccCCcchhhhhh
Confidence            489999999999999974

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=86.05  E-value=0.38  Score=43.23  Aligned_cols=20  Identities=25%  Similarity=0.468  Sum_probs=17.5

Q ss_pred             cCCCeEEEEEcCCCCcHHHHHH
Q 037945          170 DHNEKVIGLYGMGGVGKTTLLK  191 (206)
Q Consensus       170 ~~~~~vI~IvG~~G~GKTTLa~  191 (206)
                      .+.  .+.|-|.+|+||||||-
T Consensus        35 ~~~--l~viTGvSGSGKSSLaf   54 (842)
T 2vf7_A           35 RDA--LVVFTGVSGSGKSSLAF   54 (842)
T ss_dssp             SSS--EEEEESSTTSSHHHHHT
T ss_pred             CCC--EEEEECCCCCCHHHHHH
Confidence            355  89999999999999995

>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19

Probab=85.65  E-value=1.1  Score=33.58  Aligned_cols=30  Identities=17%  Similarity=-0.065  Sum_probs=21.6

Q ss_pred             HHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhh
Q 037945          165 WRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNK  196 (206)
Q Consensus       165 ~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~  196 (206)
                      +..+.+++  .+-|+|+.|+|||.++..+...
T Consensus       102 i~~~~~~~--~~ll~~~tG~GKT~~a~~~~~~  131 (237)
T 2fz4_A          102 LERWLVDK--RGCIVLPTGSGKTHVAMAAINE  131 (237)
T ss_dssp             HHHHTTTS--EEEEEESSSTTHHHHHHHHHHH
T ss_pred             HHHHHhCC--CEEEEeCCCCCHHHHHHHHHHH
Confidence            33344444  4788999999999999876654

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*

Probab=85.27  E-value=0.53  Score=38.53  Aligned_cols=21  Identities=33%  Similarity=0.596  Sum_probs=18.2

Q ss_pred             CeEEEEEcCCCCcHHHHHHHH
Q 037945          173 EKVIGLYGMGGVGKTTLLKKL  193 (206)
Q Consensus       173 ~~vI~IvG~~G~GKTTLa~~i  193 (206)
                      ...+-+.|.|.+||||++|.+
T Consensus        40 ~~klLLLG~geSGKSTi~KQm   60 (402)
T 1azs_C           40 THRLLLLGAGESGKSTIVKQM   60 (402)
T ss_dssp             EEEEEEEESTTSSHHHHHHHH
T ss_pred             cceEEEecCCCCchhhHHHHH
Confidence            457889999999999999864

>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B

Probab=84.65  E-value=0.62  Score=43.43  Aligned_cols=25  Identities=28%  Similarity=0.297  Sum_probs=21.7

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhh
Q 037945          172 NEKVIGLYGMGGVGKTTLLKKLNNK  196 (206)
Q Consensus       172 ~~~vI~IvG~~G~GKTTLa~~i~~~  196 (206)
                      ....|+|+|..++|||||+..+.+.
T Consensus       295 ~~lnIvIIGhvDvGKSTLInrLt~~  319 (1289)
T 3avx_A          295 PHVNVGTIGHVDHGKTTLTAAITTV  319 (1289)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CeeEEEEEcCCCCCHHHHHHHHHhh
Confidence            3457999999999999999998764

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}

Probab=83.78  E-value=0.49  Score=35.89  Aligned_cols=18  Identities=28%  Similarity=0.469  Sum_probs=15.9

Q ss_pred             EEcCCCCcHHHHHHHHHh
Q 037945          178 LYGMGGVGKTTLLKKLNN  195 (206)
Q Consensus       178 IvG~~G~GKTTLa~~i~~  195 (206)
                      ..|..|+|||||++.+.+
T Consensus        33 ~~~~~~vGKSsLi~~l~~   50 (255)
T 3c5h_A           33 EKGQCGIGKSCLCNRFVR   50 (255)
T ss_dssp             TTTTCCCSHHHHHHHHHC
T ss_pred             ccCCCCcCHHHHHHHHHh
Confidence            368889999999999987

>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A

Probab=83.54  E-value=1.1  Score=45.23  Aligned_cols=23  Identities=30%  Similarity=0.437  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhh
Q 037945          174 KVIGLYGMGGVGKTTLLKKLNNK  196 (206)
Q Consensus       174 ~vI~IvG~~G~GKTTLa~~i~~~  196 (206)
                      +-|-+||++|+||||+.+.+..-
T Consensus       924 ~gvmlvGptgsGKTt~~~~La~a  946 (2695)
T 4akg_A          924 QALILVGKAGCGKTATWKTVIDA  946 (2695)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHH
Confidence            36889999999999999988754

>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*

Probab=83.31  E-value=1.1  Score=33.26  Aligned_cols=23  Identities=17%  Similarity=0.046  Sum_probs=18.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhh
Q 037945          174 KVIGLYGMGGVGKTTLLKKLNNK  196 (206)
Q Consensus       174 ~vI~IvG~~G~GKTTLa~~i~~~  196 (206)
                      .+.-+.|+-|+||||.+-.+...
T Consensus        29 ~l~vitG~MgsGKTT~lL~~a~r   51 (214)
T 2j9r_A           29 WIEVICGSMFSGKSEELIRRVRR   51 (214)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHHH
T ss_pred             EEEEEECCCCCcHHHHHHHHHHH
Confidence            48889999999999877665444

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=83.04  E-value=0.57  Score=42.60  Aligned_cols=18  Identities=39%  Similarity=0.641  Sum_probs=16.3

Q ss_pred             eEEEEEcCCCCcHHHHHH
Q 037945          174 KVIGLYGMGGVGKTTLLK  191 (206)
Q Consensus       174 ~vI~IvG~~G~GKTTLa~  191 (206)
                      +.+.|.|.+|+||||||=
T Consensus        45 ~lvv~tG~SGSGKSSLaf   62 (972)
T 2r6f_A           45 KLVVLTGLSGSGKSSLAF   62 (972)
T ss_dssp             SEEEEEESTTSSHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHH
Confidence            389999999999999984

>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}

Probab=82.61  E-value=0.78  Score=33.18  Aligned_cols=21  Identities=24%  Similarity=0.153  Sum_probs=17.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHh
Q 037945          175 VIGLYGMGGVGKTTLLKKLNN  195 (206)
Q Consensus       175 vI~IvG~~G~GKTTLa~~i~~  195 (206)
                      .+-|+++.|+|||..+-.+..
T Consensus        50 ~~li~~~tGsGKT~~~~~~~~   70 (216)
T 3b6e_A           50 NIIICLPTGSGKTRVAVYIAK   70 (216)
T ss_dssp             CEEEECSCHHHHHHHHHHHHH
T ss_pred             CEEEEcCCCCCHHHHHHHHHH
Confidence            577899999999998876543

>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*

Probab=82.21  E-value=0.68  Score=33.94  Aligned_cols=19  Identities=32%  Similarity=0.298  Sum_probs=15.6

Q ss_pred             EEEEEcCCCCcHHHHHHHH
Q 037945          175 VIGLYGMGGVGKTTLLKKL  193 (206)
Q Consensus       175 vI~IvG~~G~GKTTLa~~i  193 (206)
                      .|-|++.+|.||||+|--+
T Consensus        30 ~i~v~tG~GkGKTTaA~Gl   48 (196)
T 1g5t_A           30 IIIVFTGNGKGKTTAAFGT   48 (196)
T ss_dssp             CEEEEESSSSCHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHH
Confidence            6778888889999998654

>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}

Probab=80.73  E-value=1.2  Score=37.37  Aligned_cols=39  Identities=13%  Similarity=0.015  Sum_probs=28.2

Q ss_pred             ccchHHHHHHHHHhhhcCC-----CeEEEEEcCCCCcHHHHHHHH
Q 037945          154 TVGLDSIISEVWRCIEDHN-----EKVIGLYGMGGVGKTTLLKKL  193 (206)
Q Consensus       154 ~~g~~~~~~~l~~~L~~~~-----~~vI~IvG~~G~GKTTLa~~i  193 (206)
                      ++|.+..+.-|.-.|..+.     --=|-++|.+|+ ||+||+.+
T Consensus       215 I~G~e~vK~aLll~L~GG~~k~rgdihVLL~G~PGt-KS~Lar~i  258 (506)
T 3f8t_A          215 LPGAEEVGKMLALQLFSCVGKNSERLHVLLAGYPVV-CSEILHHV  258 (506)
T ss_dssp             STTCHHHHHHHHHHHTTCCSSGGGCCCEEEESCHHH-HHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHcCCccccCCceeEEEECCCCh-HHHHHHHH
Confidence            7887776555555554441     013889999999 99999999

>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A

Probab=80.24  E-value=1.6  Score=31.29  Aligned_cols=24  Identities=17%  Similarity=0.018  Sum_probs=17.2

Q ss_pred             HhhhcCCCeEEEEEcCCCCcHHHHHH
Q 037945          166 RCIEDHNEKVIGLYGMGGVGKTTLLK  191 (206)
Q Consensus       166 ~~L~~~~~~vI~IvG~~G~GKTTLa~  191 (206)
                      ..+.++.  -+-+.++.|+|||..+-
T Consensus        33 ~~~~~~~--~~li~~~TGsGKT~~~~   56 (207)
T 2gxq_A           33 PLALEGK--DLIGQARTGTGKTLAFA   56 (207)
T ss_dssp             HHHHTTC--CEEEECCTTSCHHHHHH
T ss_pred             HHHcCCC--CEEEECCCCChHHHHHH
Confidence            3444444  58889999999998633

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	206
d2a5yb3	277	c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenor	2e-05
d1khta_	190	c.37.1.1 (A:) Adenylate kinase {Archaeon Methanoco	0.003

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 41.7 bits (97), Expect = 2e-05
 Identities = 10/60 (16%), Positives = 24/60 (40%), Gaps = 1/60 (1%)

Query: 145 PVEERPIGKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHDF 204
           P +     +   +D +I ++   + D +   + L+G  G GK+ +  +  +K        
Sbjct: 17  PKQMTCYIREYHVDRVIKKL-DEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGIN 75

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} Length = 190

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

 Score = 35.0 bits (79), Expect = 0.003
 Identities = 9/33 (27%), Positives = 17/33 (51%)

Query: 174 KVIGLYGMGGVGKTTLLKKLNNKFRDTEHDFDL 206
           KV+ + G+ GVG TT  +   +  R    ++ +
Sbjct: 2   KVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKM 34

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	206
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	99.23
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	98.31
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	98.24
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	98.22
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	98.2
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	98.19
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	98.18
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	98.17
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	98.17
d1g2912	240	Maltose transport protein MalK, N-terminal domain	98.16
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	98.15
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	98.15
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	98.14
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	98.14
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	98.11
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	98.08
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	98.06
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	98.04
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	98.04
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	98.01
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	97.99
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	97.99
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	97.96
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	97.96
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	97.93
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	97.9
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	97.89
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	97.83
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	97.81
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	97.74
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	97.72
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	97.69
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	97.67
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	97.61
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	97.49
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	97.44
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	97.41
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	97.17
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	97.17
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	97.07
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	96.9
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	96.89
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	96.83
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	96.74
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	96.74
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	96.64
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	96.59
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	96.58
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	96.45
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	96.38
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	96.31
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	96.16
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	96.14
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	96.0
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	95.84
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	95.75
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	95.59
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	95.51
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	95.51
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	95.41
d1xpua3	289	Transcription termination factor Rho, ATPase domai	95.35
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	95.24
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	95.19
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	94.74
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	94.4
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	94.34
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	94.16
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	93.77
d1tuea_	205	Replication protein E1 helicase domain {Human papi	93.63
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	93.49
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	92.55
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	92.5
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	92.47
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	91.32
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	90.68
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	90.57
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	90.53
d2jdia3	285	Central domain of alpha subunit of F1 ATP synthase	89.79
d2p6ra3	202	Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22	85.84
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	85.67
d1fx0a3	276	Central domain of alpha subunit of F1 ATP synthase	85.54
d2eyqa3	233	Transcription-repair coupling factor, TRCF {Escher	84.29
d1o5za2	296	Folylpolyglutamate synthetase {Thermotoga maritima	81.14

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.23  E-value=6.7e-12  Score=96.93  Aligned_cols=54  Identities=15%  Similarity=0.180  Sum_probs=43.9

Q ss_pred             CCccchHHHHHHHHHhhhc---CCCeEEEEEcCCCCcHHHHHHHHHhhhcC-CCCCCc
Q 037945          152 GKTVGLDSIISEVWRCIED---HNEKVIGLYGMGGVGKTTLLKKLNNKFRD-TEHDFD  205 (206)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~---~~~~vI~IvG~~G~GKTTLa~~i~~~~~~-~~~~Fd  205 (206)
                      ..+|||+.++++|+.+|.+   .+..+|+|+||||+||||||+.+|++... ...+|+
T Consensus        20 ~~~~gR~~~~~~i~~~L~~~~~~~~~~v~I~GmgGiGKTtLA~~v~~~~~~~~~~~f~   77 (277)
T d2a5yb3          20 MTCYIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYD   77 (277)
T ss_dssp             CCSCCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBS
T ss_pred             CceeCcHHHHHHHHHHHHhccCCCceEEEEECCCCCCHHHHHHHHHHhhhhhhhhcCc
Confidence            3478999999999999864   56789999999999999999999987542 124554

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.31  E-value=5.3e-07  Score=66.70  Aligned_cols=47  Identities=23%  Similarity=0.333  Sum_probs=41.5

Q ss_pred             CCCccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          151 IGKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       151 ~~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      ...++|.+..++.|..++..+...-+-++|++|+||||||+.+.+..
T Consensus        23 ~~diig~~~~~~~l~~~i~~~~~~~lll~Gp~G~GKTtla~~iak~l   69 (231)
T d1iqpa2          23 LDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALAREL   69 (231)
T ss_dssp             TTTCCSCHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred             HHHccCcHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHH
Confidence            35689999999999999999887778899999999999999987653

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.24  E-value=6.1e-07  Score=66.11  Aligned_cols=47  Identities=28%  Similarity=0.397  Sum_probs=40.5

Q ss_pred             CCCccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          151 IGKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       151 ~~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      ...++|.+..++.|..++.++...-+-++|++|+||||+|+.+.+..
T Consensus        14 ~~d~ig~~~~~~~L~~~~~~~~~~~~ll~Gp~G~GKTt~a~~la~~l   60 (224)
T d1sxjb2          14 LSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHEL   60 (224)
T ss_dssp             GGGCCSCTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred             HHHhcCCHHHHHHHHHHHHcCCCCeEEEECCCCCCchhhHHHHHHHH
Confidence            35588999999999999999887667899999999999999887654

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.22  E-value=7.8e-07  Score=65.54  Aligned_cols=47  Identities=21%  Similarity=0.440  Sum_probs=40.9

Q ss_pred             CCCccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          151 IGKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       151 ~~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      ...++|.+..++.|..++..+...-+-++|+.|+||||+|+.+.+..
T Consensus        13 ~~divg~~~~~~~L~~~i~~~~~~~lLl~Gp~G~GKttl~~~la~~l   59 (227)
T d1sxjc2          13 LDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREI   59 (227)
T ss_dssp             GGGCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred             HHHccCcHHHHHHHHHHHHcCCCCeEEEECCCCCChhHHHHHHHHHh
Confidence            35689999999999999998876667799999999999999998764

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=98.20  E-value=8.8e-07  Score=65.71  Aligned_cols=48  Identities=21%  Similarity=0.337  Sum_probs=39.0

Q ss_pred             CCCccchHHHHHHHHHhhhc-----CCCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945          151 IGKTVGLDSIISEVWRCIED-----HNEKVIGLYGMGGVGKTTLLKKLNNKFR  198 (206)
Q Consensus       151 ~~~~~g~~~~~~~l~~~L~~-----~~~~vI~IvG~~G~GKTTLa~~i~~~~~  198 (206)
                      ...++|.+..++.|..++..     ...+-+-++||+|+||||+|+.+.+...
T Consensus         8 ~~divGqe~~~~~l~~~i~~~~~~~~~~~~~L~~GPpGtGKT~lA~~la~~~~   60 (238)
T d1in4a2           8 LDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQ   60 (238)
T ss_dssp             GGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHT
T ss_pred             HHHcCChHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHhccC
Confidence            45689999999988888753     2344577999999999999999988764

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=98.19  E-value=1.7e-07  Score=68.21  Aligned_cols=41  Identities=32%  Similarity=0.535  Sum_probs=33.3

Q ss_pred             HHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          161 ISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       161 ~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      ++++...+..++  +++|+|++|+|||||++.|++-.+|.+|.
T Consensus        17 l~~is~~i~~Ge--i~~l~G~NGsGKSTLl~~i~gl~~p~~G~   57 (200)
T d1sgwa_          17 LERITMTIEKGN--VVNFHGPNGIGKTTLLKTISTYLKPLKGE   57 (200)
T ss_dssp             EEEEEEEEETTC--CEEEECCTTSSHHHHHHHHTTSSCCSEEE
T ss_pred             EeceEEEEcCCC--EEEEECCCCChHHHHHHHHhcccccCCCE
Confidence            444555566778  99999999999999999999988776553

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.18  E-value=7.2e-07  Score=65.97  Aligned_cols=48  Identities=19%  Similarity=0.345  Sum_probs=40.7

Q ss_pred             CCCCccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          150 PIGKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       150 ~~~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      ....++|.+..++.+..++..+...-+-++|++|+|||||++.+.+..
T Consensus        10 ~~~diig~~~~~~~l~~~i~~~~~~~lll~Gp~G~GKTtl~~~i~~~l   57 (237)
T d1sxjd2          10 NLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKEL   57 (237)
T ss_dssp             STTTCCSCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CHHHccCcHHHHHHHHHHHHcCCCCeEEEECCCCCChHHHHHHHHHHH
Confidence            345688988889999999998877678899999999999999988763

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.17  E-value=1.4e-08  Score=75.87  Aligned_cols=49  Identities=29%  Similarity=0.320  Sum_probs=36.1

Q ss_pred             CCccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCC
Q 037945          152 GKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEH  202 (206)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~  202 (206)
                      ++.||....++++...+..++  +++|+|++|+|||||+++|.+-.+|++|
T Consensus        13 sk~yg~~~al~~vsl~v~~Ge--~~~liGpsGaGKSTLl~~i~Gl~~p~sG   61 (239)
T d1v43a3          13 TKRFGNFTAVNKLNLTIKDGE--FLVLLGPSGCGKTTTLRMIAGLEEPTEG   61 (239)
T ss_dssp             EEEETTEEEEEEEEEEECTTC--EEEEECCTTSSHHHHHHHHHTSSCCSEE
T ss_pred             EEEECCEEEEcceeEEECCCC--EEEEECCCCChHHHHHHHHHcCCCCCCC
Confidence            344554333444444555677  9999999999999999999998877654

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=98.17  E-value=1.2e-06  Score=64.99  Aligned_cols=48  Identities=21%  Similarity=0.387  Sum_probs=38.4

Q ss_pred             CCCccchHHHHHHHHHhhhc-----CCCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945          151 IGKTVGLDSIISEVWRCIED-----HNEKVIGLYGMGGVGKTTLLKKLNNKFR  198 (206)
Q Consensus       151 ~~~~~g~~~~~~~l~~~L~~-----~~~~vI~IvG~~G~GKTTLa~~i~~~~~  198 (206)
                      ...++|.+..++.+..++..     ...+-+-++||+|+||||||+.+.+...
T Consensus         8 ~ddivGq~~~~~~L~~~i~~~~~~~~~~~~~Ll~GPpG~GKTtla~~la~~~~   60 (239)
T d1ixsb2           8 LDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELG   60 (239)
T ss_dssp             GGGSCSCHHHHHHHHHHHHHHTTSSSCCCCEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             HHHhCCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence            35689999888888777753     2355677999999999999999998764

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=98.16  E-value=1.6e-08  Score=75.62  Aligned_cols=48  Identities=25%  Similarity=0.295  Sum_probs=35.7

Q ss_pred             CccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCC
Q 037945          153 KTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEH  202 (206)
Q Consensus       153 ~~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~  202 (206)
                      +.||....++++...+.+++  +++|+|++|+|||||++.|++-..+++|
T Consensus        11 k~yg~~~al~~vsl~i~~Ge--~~~liG~sGaGKSTll~~i~gl~~p~sG   58 (240)
T d1g2912          11 KVFGEVTAVREMSLEVKDGE--FMILLGPSGCGKTTTLRMIAGLEEPSRG   58 (240)
T ss_dssp             EEETTEEEEEEEEEEEETTC--EEEEECSTTSSHHHHHHHHHTSSCCSEE
T ss_pred             EEECCEEEEcceeeEEcCCC--EEEEECCCCChHHHHHHHHhcCCCCCCC
Confidence            34454334444555556678  9999999999999999999998777544

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=98.15  E-value=1.7e-08  Score=75.60  Aligned_cols=48  Identities=29%  Similarity=0.484  Sum_probs=36.4

Q ss_pred             CccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCC
Q 037945          153 KTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEH  202 (206)
Q Consensus       153 ~~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~  202 (206)
                      +.||....++++...+.+++  +++|+|++|+|||||++.|.+...|.+|
T Consensus        10 k~yg~~~vl~~vs~~v~~Ge--i~glvG~nGaGKSTLl~~l~G~~~p~~G   57 (238)
T d1vpla_          10 KRIGKKEILKGISFEIEEGE--IFGLIGPNGAGKTTTLRIISTLIKPSSG   57 (238)
T ss_dssp             EEETTEEEEEEEEEEECTTC--EEEEECCTTSSHHHHHHHHTTSSCCSEE
T ss_pred             EEECCEEEEccceeEEcCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCC
Confidence            34454444445555556677  9999999999999999999998877644

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=98.15  E-value=1.6e-06  Score=64.92  Aligned_cols=46  Identities=22%  Similarity=0.294  Sum_probs=38.7

Q ss_pred             CccchHHHHHHHHHhhhc------CCCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945          153 KTVGLDSIISEVWRCIED------HNEKVIGLYGMGGVGKTTLLKKLNNKFR  198 (206)
Q Consensus       153 ~~~g~~~~~~~l~~~L~~------~~~~vI~IvG~~G~GKTTLa~~i~~~~~  198 (206)
                      .++||+..++.|..+|..      .....+-|+|++|+||||+++.+.+...
T Consensus        17 ~l~~Re~ei~~l~~~l~~~l~~~~~~~~~lll~GppGtGKT~l~~~l~~~l~   68 (276)
T d1fnna2          17 RLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYK   68 (276)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHHHHHHHHhCCCCCCCceEEECCCCCCHHHHHHHHHHHHh
Confidence            478999999998888863      2346899999999999999999998764

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=98.14  E-value=1.7e-08  Score=75.67  Aligned_cols=49  Identities=22%  Similarity=0.247  Sum_probs=37.8

Q ss_pred             CCccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCC
Q 037945          152 GKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEH  202 (206)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~  202 (206)
                      ++.||....++++...+..++  +++|+|++|+|||||++.|.+-.++++|
T Consensus        13 ~k~yg~~~al~~vs~~i~~Ge--i~~liGpnGaGKSTl~~~i~Gl~~p~~G   61 (240)
T d1ji0a_          13 HVYYGAIHAIKGIDLKVPRGQ--IVTLIGANGAGKTTTLSAIAGLVRAQKG   61 (240)
T ss_dssp             EEEETTEEEEEEEEEEEETTC--EEEEECSTTSSHHHHHHHHTTSSCCSEE
T ss_pred             EEEECCEEEEeeeeEEECCCC--EEEEECCCCCcHHHHHHHHhCCCCCCcc
Confidence            345554444555555666788  9999999999999999999998877654

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=98.14  E-value=2.2e-06  Score=61.63  Aligned_cols=46  Identities=24%  Similarity=0.395  Sum_probs=38.9

Q ss_pred             CCccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          152 GKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      ..++||+.+++++...|....-.-+.+||++|+|||+++..+....
T Consensus        22 d~~igRd~Ei~~l~~iL~r~~k~n~lLvG~pGVGKTalv~~LA~ri   67 (195)
T d1jbka_          22 DPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRI   67 (195)
T ss_dssp             CCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCcCcHHHHHHHHHHHhccCCCCeEEEecCCcccHHHHHHHHHHH
Confidence            3489999999999999997655578899999999999998776543

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.11  E-value=2.2e-08  Score=75.77  Aligned_cols=48  Identities=23%  Similarity=0.300  Sum_probs=36.8

Q ss_pred             CccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCC
Q 037945          153 KTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEH  202 (206)
Q Consensus       153 ~~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~  202 (206)
                      +.||....++++...+..++  +++|+|++|+|||||++.|.+..++++|
T Consensus        12 k~yg~~~aL~~vs~~v~~Ge--i~~liG~nGaGKSTLl~~i~Gl~~p~~G   59 (254)
T d1g6ha_          12 KYFGEFKALDGVSISVNKGD--VTLIIGPNGSGKSTLINVITGFLKADEG   59 (254)
T ss_dssp             EEETTEEEEEEECCEEETTC--EEEEECSTTSSHHHHHHHHTTSSCCSEE
T ss_pred             EEECCeEEEcceEEEECCCC--EEEEECCCCCcHHHHHHHHHCCCcCCCc
Confidence            34454444455555666788  9999999999999999999998877654

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.08  E-value=2.8e-08  Score=75.23  Aligned_cols=48  Identities=27%  Similarity=0.345  Sum_probs=35.8

Q ss_pred             CccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCC
Q 037945          153 KTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEH  202 (206)
Q Consensus       153 ~~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~  202 (206)
                      +.||....++++...+..++  +++|+|++|+|||||++.|.+-.++.+|
T Consensus        10 k~yg~~~al~~vs~~i~~GE--i~~iiG~sGsGKSTLl~~i~Gl~~p~~G   57 (258)
T d1b0ua_          10 KRYGGHEVLKGVSLQARAGD--VISIIGSSGSGKSTFLRCINFLEKPSEG   57 (258)
T ss_dssp             EEETTEEEEEEEEEEECTTC--EEEEECCTTSSHHHHHHHHTTSSCCSEE
T ss_pred             EEECCEEEEcceeeEEcCCC--EEEEECCCCCcHHHHHHHHHcCccCCCC
Confidence            34454444455555566688  9999999999999999999987766544

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=98.06  E-value=3.4e-06  Score=63.79  Aligned_cols=45  Identities=20%  Similarity=0.279  Sum_probs=38.3

Q ss_pred             CCccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhh
Q 037945          152 GKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNK  196 (206)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~  196 (206)
                      ..++||+.+++++...|....-+-+-+||++|+|||+|+..+...
T Consensus        18 d~~igRd~Ei~~l~~iL~r~~k~n~lLVG~~GvGKTalv~~la~r   62 (268)
T d1r6bx2          18 DPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWR   62 (268)
T ss_dssp             CCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CcccChHHHHHHHHHHHhcCccCCcEEECCCCCcHHHHHHHHHHH
Confidence            458999999999999998755556779999999999999887654

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.04  E-value=3.4e-06  Score=62.85  Aligned_cols=46  Identities=20%  Similarity=0.292  Sum_probs=38.2

Q ss_pred             CCccchHHHHHHHHHhhhc-----------------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          152 GKTVGLDSIISEVWRCIED-----------------HNEKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~-----------------~~~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      ..++|.+..++.|..+|..                 +..+.+-++|++|+||||+|+.+++..
T Consensus        14 ~dlig~~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~lll~GPpG~GKTt~a~~la~~~   76 (253)
T d1sxja2          14 QQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQEL   76 (253)
T ss_dssp             GGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             HHhcCCHHHHHHHHHHHHhhhhcchhhhhhhcccCCCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence            5588998889999888753                 234578999999999999999999865

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.04  E-value=7.6e-07  Score=65.94  Aligned_cols=39  Identities=26%  Similarity=0.355  Sum_probs=31.5

Q ss_pred             HHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCC
Q 037945          162 SEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEH  202 (206)
Q Consensus       162 ~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~  202 (206)
                      +++...+..++  +++|+|++|+|||||++++.+-..|.+|
T Consensus        22 ~~isl~i~~Ge--~~~iiG~sGsGKSTLl~~i~gl~~p~sG   60 (230)
T d1l2ta_          22 KNVNLNIKEGE--FVSIMGPSGSGKSTMLNIIGCLDKPTEG   60 (230)
T ss_dssp             EEEEEEECTTC--EEEEECSTTSSHHHHHHHHTTSSCCSEE
T ss_pred             eceEEEEcCCC--EEEEECCCCCCcchhhHhccCCCCCCcc
Confidence            34444556678  9999999999999999999998777644

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=98.01  E-value=1.1e-06  Score=65.67  Aligned_cols=41  Identities=20%  Similarity=0.365  Sum_probs=33.1

Q ss_pred             HHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945          161 ISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD  203 (206)
Q Consensus       161 ~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~  203 (206)
                      ++++...+..++  +++|+|++|+|||||++.+.+-.+|.+|.
T Consensus        18 L~~isl~i~~Ge--~vaivG~sGsGKSTLl~ll~gl~~p~~G~   58 (242)
T d1mv5a_          18 LRDISFEAQPNS--IIAFAGPSGGGKSTIFSLLERFYQPTAGE   58 (242)
T ss_dssp             EEEEEEEECTTE--EEEEECCTTSSHHHHHHHHTTSSCCSBSC
T ss_pred             eeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHHHhhCCCCCE
Confidence            344555566677  99999999999999999999988876554

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=97.99  E-value=9.8e-07  Score=65.71  Aligned_cols=39  Identities=31%  Similarity=0.419  Sum_probs=31.7

Q ss_pred             HHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCC
Q 037945          162 SEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEH  202 (206)
Q Consensus       162 ~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~  202 (206)
                      +++...+..++  +++|+|++|+|||||++.|++-.++++|
T Consensus        22 ~~vsl~i~~Ge--~~~iiG~sGsGKSTLl~~i~Gl~~p~sG   60 (240)
T d3dhwc1          22 NNVSLHVPAGQ--IYGVIGASGAGKSTLIRCVNLLERPTEG   60 (240)
T ss_dssp             EEEEEEECSSC--EEEEEESTTSSHHHHHHHHTTSSCCSEE
T ss_pred             eceeEEEcCCC--EEEEECCCCCCHHHHHHHHcCCccccCC
Confidence            34444556677  9999999999999999999998877654

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.99  E-value=1.1e-06  Score=67.12  Aligned_cols=36  Identities=28%  Similarity=0.381  Sum_probs=29.5

Q ss_pred             HHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCC
Q 037945          165 WRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEH  202 (206)
Q Consensus       165 ~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~  202 (206)
                      ...+..++  +++|+|++|+|||||++.|.+...+.+|
T Consensus        56 sl~i~~Ge--~vaivG~nGsGKSTLl~~i~Gl~~p~~G   91 (281)
T d1r0wa_          56 NLNIEKGE--MLAITGSTGSGKTSLLMLILGELEASEG   91 (281)
T ss_dssp             EEEECTTC--EEEEEESTTSSHHHHHHHHHTSSCCSEE
T ss_pred             EEEEcCCC--EEEEECCCCChHHHHHHHHhCCCcCCCc
Confidence            33344577  9999999999999999999998877644

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=97.96  E-value=4e-06  Score=62.79  Aligned_cols=42  Identities=14%  Similarity=0.183  Sum_probs=35.1

Q ss_pred             CCccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          152 GKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      ..++||+.+++.|...    .-+.|.|+|++|+|||||++.+....
T Consensus        12 ~~f~GR~~el~~l~~~----~~~~i~i~G~~G~GKTsLl~~~~~~~   53 (283)
T d2fnaa2          12 KDFFDREKEIEKLKGL----RAPITLVLGLRRTGKSSIIKIGINEL   53 (283)
T ss_dssp             GGSCCCHHHHHHHHHT----CSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             hhCCChHHHHHHHHhc----cCCEEEEEcCCCCcHHHHHHHHHHHC
Confidence            5689999999988763    33589999999999999999987654

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.96  E-value=1.3e-06  Score=65.67  Aligned_cols=40  Identities=25%  Similarity=0.332  Sum_probs=32.2

Q ss_pred             HHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCC
Q 037945          161 ISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEH  202 (206)
Q Consensus       161 ~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~  202 (206)
                      ++++...+..++  +++|+|++|+|||||++.+.+-.+|.+|
T Consensus        30 L~~isl~i~~Ge--~vaivG~sGsGKSTLl~li~gl~~p~~G   69 (251)
T d1jj7a_          30 LQGLTFTLRPGE--VTALVGPNGSGKSTVAALLQNLYQPTGG   69 (251)
T ss_dssp             EEEEEEEECTTC--EEEEECSTTSSHHHHHHHHTTSSCCSEE
T ss_pred             EeceEEEEcCCC--EEEEECCCCCcHHHHHHHHhcccCCCcC
Confidence            344545555677  9999999999999999999998877644

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.93  E-value=1.4e-06  Score=65.47  Aligned_cols=40  Identities=20%  Similarity=0.292  Sum_probs=31.8

Q ss_pred             HHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCC
Q 037945          161 ISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEH  202 (206)
Q Consensus       161 ~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~  202 (206)
                      ++++...+..++  +++|+|++|+|||||++.+.+-..|.+|
T Consensus        31 L~~isl~i~~Ge--~iaivG~sGsGKSTLl~ll~gl~~p~~G   70 (253)
T d3b60a1          31 LRNINLKIPAGK--TVALVGRSGSGKSTIASLITRFYDIDEG   70 (253)
T ss_dssp             EEEEEEEECTTC--EEEEEECTTSSHHHHHHHHTTTTCCSEE
T ss_pred             eeceEEEEcCCC--EEEEECCCCChHHHHHHHHhcccCCCcc
Confidence            344444555677  9999999999999999999998777544

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=97.90  E-value=1.9e-06  Score=64.27  Aligned_cols=40  Identities=28%  Similarity=0.445  Sum_probs=32.0

Q ss_pred             HHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCC
Q 037945          161 ISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEH  202 (206)
Q Consensus       161 ~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~  202 (206)
                      ++++...+..++  .++|+|++|+|||||++.+.+-..+.+|
T Consensus        19 L~~isl~i~~Ge--~vaIvG~sGsGKSTLl~ll~gl~~p~~G   58 (241)
T d2pmka1          19 LDNINLSIKQGE--VIGIVGRSGSGKSTLTKLIQRFYIPENG   58 (241)
T ss_dssp             EEEEEEEEETTC--EEEEECSTTSSHHHHHHHHTTSSCCSEE
T ss_pred             EeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHHhcCCCCCC
Confidence            334445566678  9999999999999999999998776544

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.89  E-value=4.8e-06  Score=61.94  Aligned_cols=47  Identities=17%  Similarity=0.169  Sum_probs=37.7

Q ss_pred             CCCccchHHHHHHHHHhhhcC-CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          151 IGKTVGLDSIISEVWRCIEDH-NEKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       151 ~~~~~g~~~~~~~l~~~L~~~-~~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      ...++|.+.....|..++..+ ...-+-++|++|+||||+|+.+.+..
T Consensus        10 ~~diig~~~~~~~L~~~~~~~~~~~~lll~Gp~G~GKTt~~~~la~~l   57 (252)
T d1sxje2          10 LNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESI   57 (252)
T ss_dssp             GGGCCSCHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHH
T ss_pred             HHHccCcHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHhh
Confidence            355889888888888887654 34456799999999999999998864

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=97.83  E-value=1.7e-06  Score=64.43  Aligned_cols=40  Identities=25%  Similarity=0.356  Sum_probs=32.8

Q ss_pred             HHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCC
Q 037945          161 ISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEH  202 (206)
Q Consensus       161 ~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~  202 (206)
                      ++++...+..++  +++|+|++|+|||||++.|.+-..+.+|
T Consensus        21 L~~vsl~i~~Ge--~~~iiG~sGsGKSTll~~i~gl~~p~~G   60 (242)
T d1oxxk2          21 LDNVNINIENGE--RFGILGPSGAGKTTFMRIIAGLDVPSTG   60 (242)
T ss_dssp             EEEEEEEECTTC--EEEEECSCHHHHHHHHHHHHTSSCCSEE
T ss_pred             EeceEEEECCCC--EEEEECCCCCcHHHHHHHHHcCcCCCCc
Confidence            445555566788  9999999999999999999998777644

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=97.81  E-value=5.9e-06  Score=62.11  Aligned_cols=46  Identities=22%  Similarity=0.172  Sum_probs=34.5

Q ss_pred             CCccchHHHHHHHHHhhhc----C----C-CeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          152 GKTVGLDSIISEVWRCIED----H----N-EKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~----~----~-~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      ..+.||+..++.|...+..    +    + ..++-++|++|+||||+++.+.+..
T Consensus        16 ~~~~~Re~e~~~l~~~l~~~~~~~~~~~~~~~~l~l~GppGtGKT~l~~~l~~~l   70 (287)
T d1w5sa2          16 PELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRV   70 (287)
T ss_dssp             SSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHcCCCCCCcceEEEeECCCCCCHHHHHHHHHHHH
Confidence            4477898888888877642    1    1 2245678999999999999998764

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=97.74  E-value=1.9e-05  Score=58.48  Aligned_cols=46  Identities=20%  Similarity=0.314  Sum_probs=39.2

Q ss_pred             CCccchHHHHHHHHHhhhcCCC-eEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          152 GKTVGLDSIISEVWRCIEDHNE-KVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~~~~-~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      ..++|.+..++.+..++..+.+ +.+-++|++|+||||+|+.+.+..
T Consensus        12 ~dlig~~~~~~~L~~~i~~~~~~~~~Ll~Gp~G~GKtt~a~~~~~~l   58 (239)
T d1njfa_          12 ADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL   58 (239)
T ss_dssp             GGSCSCHHHHHHHHHHHHTTCCCSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             HHccChHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHh
Confidence            5589999999999999988764 458899999999999999987654

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=97.72  E-value=1.6e-05  Score=63.10  Aligned_cols=43  Identities=28%  Similarity=0.371  Sum_probs=35.1

Q ss_pred             CCccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHH
Q 037945          152 GKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLN  194 (206)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~  194 (206)
                      ..++||+.++.+++..|....-+-+-+||++|+|||+|+.-+.
T Consensus        22 d~~~gr~~ei~~~~~~L~r~~k~n~llvG~~GvGKtaiv~~la   64 (387)
T d1qvra2          22 DPVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLA   64 (387)
T ss_dssp             CCCCSCHHHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHH
T ss_pred             CCCcCcHHHHHHHHHHHhcCCCCCCeEECCCCCCHHHHHHHHH
Confidence            3489999999999999986544456788999999999876444

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=97.69  E-value=3.5e-06  Score=63.32  Aligned_cols=41  Identities=27%  Similarity=0.449  Sum_probs=32.5

Q ss_pred             HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCC
Q 037945          160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEH  202 (206)
Q Consensus       160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~  202 (206)
                      .++++...+..++  .++|+|++|+|||||++.+.+-..+.+|
T Consensus        33 vL~~isl~i~~Ge--~vaivG~sGsGKSTLl~ll~gl~~p~~G   73 (255)
T d2hyda1          33 ILKDINLSIEKGE--TVAFVGMSGGGKSTLINLIPRFYDVTSG   73 (255)
T ss_dssp             SEEEEEEEECTTC--EEEEECSTTSSHHHHHTTTTTSSCCSEE
T ss_pred             ceeceEEEEcCCC--EEEEECCCCCcHHHHHHHHHhcCCcccc
Confidence            3445555566678  9999999999999999999988776544

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.67  E-value=2.7e-05  Score=58.17  Aligned_cols=27  Identities=26%  Similarity=0.288  Sum_probs=23.4

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945          172 NEKVIGLYGMGGVGKTTLLKKLNNKFR  198 (206)
Q Consensus       172 ~~~vI~IvG~~G~GKTTLa~~i~~~~~  198 (206)
                      ..+.|-++|++|+||||||+.|.+...
T Consensus        31 ~P~~ilL~GpPGtGKT~la~~la~~~~   57 (273)
T d1gvnb_          31 SPTAFLLGGQPGSGKTSLRSAIFEETQ   57 (273)
T ss_dssp             SCEEEEEECCTTSCTHHHHHHHHHHTT
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHhh
Confidence            356788999999999999999998763

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=97.61  E-value=3.6e-05  Score=59.27  Aligned_cols=45  Identities=24%  Similarity=0.310  Sum_probs=34.8

Q ss_pred             CccchHHHHHHHHHhhhc--------------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          153 KTVGLDSIISEVWRCIED--------------HNEKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       153 ~~~g~~~~~~~l~~~L~~--------------~~~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      .++|.+..++.+...+..              ...+-|.++||+|+|||+||+.+.+..
T Consensus        15 ~ViGQd~A~~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GPpG~GKT~lAkalA~~~   73 (309)
T d1ofha_          15 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA   73 (309)
T ss_dssp             TCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred             cccChHHHHHHHHHHHHHHHHHhccCCCCccCCCCceEEEECCCCCCHHHHHHHHhhcc
Confidence            478988888777665521              134578899999999999999998875

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=97.49  E-value=9.8e-05  Score=54.93  Aligned_cols=47  Identities=26%  Similarity=0.331  Sum_probs=33.7

Q ss_pred             CCccchHHHHHHHHHh---hhc---------CCCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945          152 GKTVGLDSIISEVWRC---IED---------HNEKVIGLYGMGGVGKTTLLKKLNNKFR  198 (206)
Q Consensus       152 ~~~~g~~~~~~~l~~~---L~~---------~~~~vI~IvG~~G~GKTTLa~~i~~~~~  198 (206)
                      ..++|.+..++.|.+.   +..         ...+-|-++|++|+|||+||+.+.+...
T Consensus         9 ~di~G~~~~k~~l~~~i~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~aia~~~~   67 (247)
T d1ixza_           9 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR   67 (247)
T ss_dssp             GGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             HHHccHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEecCCCCChhHHHHHHHHHcC
Confidence            4578887766554433   322         1234689999999999999999998753

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=97.44  E-value=8.5e-05  Score=55.58  Aligned_cols=47  Identities=26%  Similarity=0.317  Sum_probs=34.8

Q ss_pred             CCccchHHHHHHHHHh---hhc---------CCCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945          152 GKTVGLDSIISEVWRC---IED---------HNEKVIGLYGMGGVGKTTLLKKLNNKFR  198 (206)
Q Consensus       152 ~~~~g~~~~~~~l~~~---L~~---------~~~~vI~IvG~~G~GKTTLa~~i~~~~~  198 (206)
                      ..++|.++.++.|.+.   +..         ...+-|-++|++|+|||+||+.|.+...
T Consensus        12 ~Di~Gl~~~k~~l~e~v~~~~~~~~~~~~g~~~~~~iLL~GppGtGKT~la~~iA~~~~   70 (256)
T d1lv7a_          12 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAK   70 (256)
T ss_dssp             GGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             HHHhchHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEeeCCCCCCccHHHHHHHHHcC
Confidence            4588888777766543   322         1245688999999999999999998763

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.41  E-value=9.8e-05  Score=54.90  Aligned_cols=26  Identities=27%  Similarity=0.198  Sum_probs=22.5

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945          173 EKVIGLYGMGGVGKTTLLKKLNNKFR  198 (206)
Q Consensus       173 ~~vI~IvG~~G~GKTTLa~~i~~~~~  198 (206)
                      .+-|-++|++|+|||+||+.|.+...
T Consensus        40 ~~~vLL~GppGtGKT~la~alA~~~~   65 (246)
T d1d2na_          40 LVSVLLEGPPHSGKTALAAKIAEESN   65 (246)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred             CeEEEEECcCCCCHHHHHHHHhhccc
Confidence            45688999999999999999998753

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=97.17  E-value=0.00029  Score=54.17  Aligned_cols=46  Identities=24%  Similarity=0.249  Sum_probs=36.1

Q ss_pred             CCccchHHHHHHHHHhhhc---------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          152 GKTVGLDSIISEVWRCIED---------HNEKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~---------~~~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      ..++|.+..++.+...+..         ....++.++|+.|+|||.||+.+....
T Consensus        22 ~~viGQ~~a~~~v~~~v~~~~~~l~~~~~p~~~~lf~Gp~GvGKT~lak~la~~l   76 (315)
T d1r6bx3          22 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL   76 (315)
T ss_dssp             TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CeecChHHHHHHHHHHHHHHHccCCCCCCCceEEEEECCCcchhHHHHHHHHhhc
Confidence            3478988888888776641         224578899999999999999987654

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=97.17  E-value=0.00027  Score=54.66  Aligned_cols=36  Identities=25%  Similarity=0.419  Sum_probs=27.5

Q ss_pred             HHHHHhhhc--CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          162 SEVWRCIED--HNEKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       162 ~~l~~~L~~--~~~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      .+++..+..  ++..+|+|.|++|+|||||+..+....
T Consensus        41 ~~ll~~~~~~~~~~~~IgitG~pGaGKSTLi~~l~~~~   78 (327)
T d2p67a1          41 TQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLL   78 (327)
T ss_dssp             HHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             HHHHHHhhhccCCceEEEeeCCCCCCHHHHHHHHHHHH
Confidence            344444433  568899999999999999999886554

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.07  E-value=0.00046  Score=53.21  Aligned_cols=37  Identities=22%  Similarity=0.440  Sum_probs=28.2

Q ss_pred             HHHHHHhhh--cCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          161 ISEVWRCIE--DHNEKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       161 ~~~l~~~L~--~~~~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      ...++..+.  .++..+|+|.|++|+|||||+..+....
T Consensus        37 ~~~~~~~~~~~~~~~~~igitG~pGaGKSTli~~l~~~~   75 (323)
T d2qm8a1          37 VRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLL   75 (323)
T ss_dssp             HHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhccCCceEEeeeCCCCCCHHHHHHHHHHHH
Confidence            444555543  3567899999999999999999887653

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.90  E-value=0.00024  Score=53.32  Aligned_cols=26  Identities=38%  Similarity=0.547  Sum_probs=22.6

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945          173 EKVIGLYGMGGVGKTTLLKKLNNKFR  198 (206)
Q Consensus       173 ~~vI~IvG~~G~GKTTLa~~i~~~~~  198 (206)
                      .+-|-++|++|+|||+|++.+.+...
T Consensus        41 ~~giLL~Gp~GtGKT~l~~ala~~~~   66 (265)
T d1r7ra3          41 SKGVLFYGPPGCGKTLLAKAIANECQ   66 (265)
T ss_dssp             CCEEEEBCCTTSSHHHHHHHHHHHTT
T ss_pred             CCeEEEECCCCCcchhHHHHHHHHhC
Confidence            34688999999999999999998753

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=96.89  E-value=0.00033  Score=53.65  Aligned_cols=27  Identities=26%  Similarity=0.319  Sum_probs=23.3

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          171 HNEKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       171 ~~~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      ...-+|||.|..|+||||+++.+....
T Consensus        78 k~P~iIGIaG~sgSGKSTla~~L~~lL  104 (308)
T d1sq5a_          78 RIPYIISIAGSVAVGKSTTARVLQALL  104 (308)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCCEEEEEeCCCCCCCcHHHHHHHHHH
Confidence            346699999999999999999987654

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=96.83  E-value=0.00025  Score=54.80  Aligned_cols=45  Identities=20%  Similarity=0.259  Sum_probs=32.8

Q ss_pred             CCccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhh
Q 037945          152 GKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNK  196 (206)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~  196 (206)
                      +.++|.+..+.-|...+-.....=+-++|++|+||||||+.+..-
T Consensus         7 ~~I~Gq~~~kral~laa~~~~~h~vLl~G~pG~GKT~lar~~~~i   51 (333)
T d1g8pa_           7 SAIVGQEDMKLALLLTAVDPGIGGVLVFGDRGTGKSTAVRALAAL   51 (333)
T ss_dssp             GGSCSCHHHHHHHHHHHHCGGGCCEEEECCGGGCTTHHHHHHHHH
T ss_pred             hhccCcHHHHHHHHHHHhccCCCeEEEECCCCccHHHHHHHHHHh
Confidence            568999877765554443222224789999999999999988753

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=96.74  E-value=0.0007  Score=49.30  Aligned_cols=34  Identities=29%  Similarity=0.561  Sum_probs=25.9

Q ss_pred             HHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          161 ISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       161 ~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      ++.|...| .+.  ...++|.+|+|||||++.+..+.
T Consensus        86 ~~~L~~~l-~~k--t~~~~G~SGVGKSTLiN~L~~~~  119 (225)
T d1u0la2          86 IEELKEYL-KGK--ISTMAGLSGVGKSSLLNAINPGL  119 (225)
T ss_dssp             HHHHHHHH-SSS--EEEEECSTTSSHHHHHHHHSTTC
T ss_pred             HhhHHHHh-cCC--eEEEECCCCCCHHHHHHhhcchh
Confidence            34455545 344  78899999999999999997754

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=96.74  E-value=0.00095  Score=51.20  Aligned_cols=45  Identities=33%  Similarity=0.397  Sum_probs=33.9

Q ss_pred             CccchHHHHHHHHHhhhc---------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          153 KTVGLDSIISEVWRCIED---------HNEKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       153 ~~~g~~~~~~~l~~~L~~---------~~~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      .++|.+..++.+...+..         ....++.++|+.|+|||.||+.+....
T Consensus        24 ~v~GQ~~ai~~v~~~i~~~~~~l~~~~kp~~~~lf~Gp~G~GKt~lak~la~~l   77 (315)
T d1qvra3          24 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATL   77 (315)
T ss_dssp             HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred             eEeCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCcchHHHHHHHHHHHh
Confidence            367888777777665542         124488899999999999999887654

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.64  E-value=0.00063  Score=51.45  Aligned_cols=27  Identities=22%  Similarity=0.196  Sum_probs=22.3

Q ss_pred             hcCCCeEEEEEcCCCCcHHHHHHHHHh
Q 037945          169 EDHNEKVIGLYGMGGVGKTTLLKKLNN  195 (206)
Q Consensus       169 ~~~~~~vI~IvG~~G~GKTTLa~~i~~  195 (206)
                      .....-+|||-|..|+|||||+..|..
T Consensus        23 ~~~~P~iIGi~G~qGSGKSTl~~~l~~   49 (286)
T d1odfa_          23 GNKCPLFIFFSGPQGSGKSFTSIQIYN   49 (286)
T ss_dssp             TCCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCCCEEEEeECCCCCCHHHHHHHHHH
Confidence            344566999999999999999987754

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=96.59  E-value=0.0015  Score=51.06  Aligned_cols=25  Identities=32%  Similarity=0.428  Sum_probs=21.4

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          173 EKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       173 ~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      ..-|-.+||.|+|||-||+.+....
T Consensus        68 ~~niLfiGPTGvGKTElAk~LA~~~   92 (364)
T d1um8a_          68 KSNILLIGPTGSGKTLMAQTLAKHL   92 (364)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred             CcceeeeCCCCccHHHHHHHHHhhc
Confidence            4568999999999999999987653

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=96.58  E-value=0.002  Score=46.48  Aligned_cols=25  Identities=40%  Similarity=0.569  Sum_probs=21.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945          174 KVIGLYGMGGVGKTTLLKKLNNKFR  198 (206)
Q Consensus       174 ~vI~IvG~~G~GKTTLa~~i~~~~~  198 (206)
                      ..+-|+|+.|+|||.|++.+++...
T Consensus        37 n~l~l~G~~G~GKTHLl~A~~~~~~   61 (213)
T d1l8qa2          37 NPIFIYGSVGTGKTHLLQAAGNEAK   61 (213)
T ss_dssp             SSEEEECSSSSSHHHHHHHHHHHHH
T ss_pred             CcEEEECCCCCcHHHHHHHHHHHhc
Confidence            3478999999999999999998753

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=96.45  E-value=0.0018  Score=44.38  Aligned_cols=26  Identities=31%  Similarity=0.335  Sum_probs=22.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhhhcC
Q 037945          174 KVIGLYGMGGVGKTTLLKKLNNKFRD  199 (206)
Q Consensus       174 ~vI~IvG~~G~GKTTLa~~i~~~~~~  199 (206)
                      .+|.+.|.=|+||||++|.+.....+
T Consensus        34 ~ii~L~G~LGaGKTtfvr~~~~~lg~   59 (158)
T d1htwa_          34 IMVYLNGDLGAGKTTLTRGMLQGIGH   59 (158)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred             eEEEEecCCCccHHHHHHHHHhhccc
Confidence            39999999999999999999887643

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.38  E-value=0.0012  Score=49.12  Aligned_cols=25  Identities=36%  Similarity=0.517  Sum_probs=21.9

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          173 EKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       173 ~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      .+-|-++|++|+|||+|++.+.+..
T Consensus        38 ~~giLL~GppGtGKT~l~~ala~~~   62 (258)
T d1e32a2          38 PRGILLYGPPGTGKTLIARAVANET   62 (258)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred             CceeEEecCCCCCchHHHHHHHHHh
Confidence            3468899999999999999998865

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=96.31  E-value=0.0029  Score=49.34  Aligned_cols=27  Identities=26%  Similarity=0.137  Sum_probs=23.6

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945          172 NEKVIGLYGMGGVGKTTLLKKLNNKFR  198 (206)
Q Consensus       172 ~~~vI~IvG~~G~GKTTLa~~i~~~~~  198 (206)
                      .-+.+.++||+|+||||+|+.+.+...
T Consensus       153 ~~~~~~~~g~~~~gk~~~~~~~~~~~~  179 (362)
T d1svma_         153 KKRYWLFKGPIDSGKTTLAAALLELCG  179 (362)
T ss_dssp             TCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred             CcCeEEEECCCCCCHHHHHHHHHHHcC
Confidence            345899999999999999999998764

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=96.16  E-value=0.0035  Score=50.22  Aligned_cols=47  Identities=23%  Similarity=0.309  Sum_probs=34.8

Q ss_pred             CCccchHHHHHHHHHhhhc--------C------CCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945          152 GKTVGLDSIISEVWRCIED--------H------NEKVIGLYGMGGVGKTTLLKKLNNKFR  198 (206)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~--------~------~~~vI~IvG~~G~GKTTLa~~i~~~~~  198 (206)
                      .+++|.+..+.-+.-.+.+        .      ..+=|-++||.|+|||.||+.+.....
T Consensus        14 ~yVvGQ~~AKk~lsvav~nhyrR~~~~~~~~~ei~ksNILliGPTGvGKTlLAr~LAk~l~   74 (443)
T d1g41a_          14 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLAN   74 (443)
T ss_dssp             TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             CcccCcHHHHHHHHHHHHHHHHHhhcccccccccccccEEEECCCCCCHHHHHHHHHHHhC
Confidence            4688888877766665531        1      123588999999999999999987653

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=96.14  E-value=0.0029  Score=46.87  Aligned_cols=39  Identities=23%  Similarity=0.384  Sum_probs=28.7

Q ss_pred             HHHHHHHHhhhcC--CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          159 SIISEVWRCIEDH--NEKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       159 ~~~~~l~~~L~~~--~~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      ..+.++...+.+.  +.-.|.++|..|+|||||.+.|++..
T Consensus        16 ~~l~e~~~~l~~~~~~~l~I~LvG~tg~GKSSliN~ilg~~   56 (257)
T d1h65a_          16 TKLLELLGNLKQEDVNSLTILVMGKGGVGKSSTVNSIIGER   56 (257)
T ss_dssp             HHHHHHHHHHHHTTCCEEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred             HHHHHHHHHHhhcCCCCcEEEEECCCCCcHHHHHHHHhCCC
Confidence            3445555555542  33468899999999999999999864

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=96.00  E-value=0.0037  Score=47.98  Aligned_cols=25  Identities=28%  Similarity=0.335  Sum_probs=21.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhhcC
Q 037945          175 VIGLYGMGGVGKTTLLKKLNNKFRD  199 (206)
Q Consensus       175 vI~IvG~~G~GKTTLa~~i~~~~~~  199 (206)
                      -|.|.|+.|+|||||++.+.+...+
T Consensus       168 nili~G~tgSGKTT~l~al~~~i~~  192 (323)
T d1g6oa_         168 NVIVCGGTGSGKTTYIKSIMEFIPK  192 (323)
T ss_dssp             CEEEEESTTSSHHHHHHHHGGGSCT
T ss_pred             CEEEEeeccccchHHHHHHhhhccc
Confidence            5899999999999999999887643

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=95.84  E-value=0.0036  Score=47.92  Aligned_cols=23  Identities=30%  Similarity=0.531  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhh
Q 037945          175 VIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       175 vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      ++-++|++|+|||.||+.+.+..
T Consensus       125 ~~l~~G~pG~GKT~la~ala~~~  147 (321)
T d1w44a_         125 MVIVTGKGNSGKTPLVHALGEAL  147 (321)
T ss_dssp             EEEEECSSSSCHHHHHHHHHHHH
T ss_pred             eEEEECCCCccHHHHHHHHHHHh
Confidence            56668999999999999998875

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.75  E-value=0.0033  Score=45.35  Aligned_cols=21  Identities=29%  Similarity=0.401  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHh
Q 037945          175 VIGLYGMGGVGKTTLLKKLNN  195 (206)
Q Consensus       175 vI~IvG~~G~GKTTLa~~i~~  195 (206)
                      ++-|.|++|+|||||+-.+..
T Consensus        36 ~~li~G~pGsGKT~l~lq~~~   56 (251)
T d1szpa2          36 ITELFGEFRTGKSQLCHTLAV   56 (251)
T ss_dssp             EEEEEESTTSSHHHHHHHHTT
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            999999999999999987643

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=95.59  E-value=0.004  Score=45.23  Aligned_cols=23  Identities=30%  Similarity=0.423  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhh
Q 037945          174 KVIGLYGMGGVGKTTLLKKLNNK  196 (206)
Q Consensus       174 ~vI~IvG~~G~GKTTLa~~i~~~  196 (206)
                      +++-|.|++|+|||||+-.+...
T Consensus        37 ~~~li~G~pGsGKT~~~lq~~~~   59 (254)
T d1pzna2          37 AITEVFGEFGSGKTQLAHTLAVM   59 (254)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHH
Confidence            39999999999999999877654

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.51  E-value=0.0048  Score=46.24  Aligned_cols=33  Identities=27%  Similarity=0.411  Sum_probs=26.6

Q ss_pred             HHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          164 VWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       164 l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      ++..+ ++.+.||+|+|+-++|||||+..+++..
T Consensus        24 ~l~~~-~~~v~vvsi~G~~~sGKS~llN~l~~~~   56 (277)
T d1f5na2          24 ILSAI-TQPMVVVAIVGLYRTGKSYLMNKLAGKK   56 (277)
T ss_dssp             HHHTC-CSBEEEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred             HHHcC-CCCEEEEEEECCCCCCHHHHHHHHcCCC
Confidence            33433 4568899999999999999999998753

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=95.51  E-value=0.0037  Score=45.13  Aligned_cols=23  Identities=26%  Similarity=0.394  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhh
Q 037945          175 VIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       175 vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      ++-|.|.+|+|||||+..+....
T Consensus        36 l~~i~G~~G~GKT~~~l~~a~~~   58 (258)
T d2i1qa2          36 VTEFAGVFGSGKTQIMHQSCVNL   58 (258)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHH
Confidence            99999999999999999886543

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.41  E-value=0.0057  Score=44.34  Aligned_cols=23  Identities=26%  Similarity=0.271  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhh
Q 037945          174 KVIGLYGMGGVGKTTLLKKLNNK  196 (206)
Q Consensus       174 ~vI~IvG~~G~GKTTLa~~i~~~  196 (206)
                      +++-|+|++|+|||||+..+...
T Consensus        38 ~~~~i~G~~GsGKT~lalq~~~~   60 (258)
T d1v5wa_          38 AITEAFGEFRTGKTQLSHTLCVT   60 (258)
T ss_dssp             EEEEEECCTTCTHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHH
Confidence            39999999999999999987653

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=95.35  E-value=0.0084  Score=45.04  Aligned_cols=33  Identities=18%  Similarity=0.122  Sum_probs=26.9

Q ss_pred             HHHHhhhc---CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          163 EVWRCIED---HNEKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       163 ~l~~~L~~---~~~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      +++..+..   ++  .++|.|..|+|||||+..+.+..
T Consensus        32 r~ID~l~PigrGQ--r~~I~g~~g~GKT~l~~~i~~~~   67 (289)
T d1xpua3          32 RVLDLASPIGRGQ--RGLIVAPPKAGKTMLLQNIAQSI   67 (289)
T ss_dssp             HHHHHHSCCBTTC--EEEEEECSSSSHHHHHHHHHHHH
T ss_pred             eeeeecccccCCC--eeeEeCCCCCCHHHHHHHHHHHH
Confidence            45666654   67  99999999999999999987654

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=95.24  E-value=0.0015  Score=47.65  Aligned_cols=23  Identities=30%  Similarity=0.567  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhh
Q 037945          175 VIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       175 vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      ...++|.+|+|||||++.+..+.
T Consensus        99 ~~vl~G~SGVGKSSLiN~L~~~~  121 (231)
T d1t9ha2          99 TTVFAGQSGVGKSSLLNAISPEL  121 (231)
T ss_dssp             EEEEEESHHHHHHHHHHHHCC--
T ss_pred             eEEEECCCCccHHHHHHhhccHh
Confidence            56799999999999999998764

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.19  E-value=0.0098  Score=46.85  Aligned_cols=22  Identities=23%  Similarity=0.478  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHh
Q 037945          174 KVIGLYGMGGVGKTTLLKKLNN  195 (206)
Q Consensus       174 ~vI~IvG~~G~GKTTLa~~i~~  195 (206)
                      --|+|+|.+|+|||||++.+.+
T Consensus        57 l~Iai~G~~n~GKSSLiNaL~G   78 (400)
T d1tq4a_          57 LNVAVTGETGSGKSSFINTLRG   78 (400)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHhC
Confidence            4699999999999999999987

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=94.74  E-value=0.012  Score=43.52  Aligned_cols=32  Identities=19%  Similarity=0.212  Sum_probs=24.5

Q ss_pred             HHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhh
Q 037945          163 EVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNK  196 (206)
Q Consensus       163 ~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~  196 (206)
                      ++..-+..++  ++.|.|.+|+|||||+..+.-+
T Consensus        27 ~~~~G~~~G~--l~vi~G~~G~GKT~~~~~la~~   58 (277)
T d1cr2a_          27 DKTLGARGGE--VIMVTSGSGMGKSTFVRQQALQ   58 (277)
T ss_dssp             HHHCSBCTTC--EEEEECSTTSSHHHHHHHHHHH
T ss_pred             HHhcCCCCCe--EEEEEeCCCCCHHHHHHHHHHh
Confidence            3434455677  8899999999999998877544

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=94.40  E-value=0.016  Score=42.60  Aligned_cols=26  Identities=31%  Similarity=0.401  Sum_probs=21.1

Q ss_pred             cCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          170 DHNEKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       170 ~~~~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      .+.  +..|+|.+|+|||||+-.+.-..
T Consensus        28 pg~--~~~i~G~~G~GKS~l~l~la~~i   53 (274)
T d1nlfa_          28 AGT--VGALVSPGGAGKSMLALQLAAQI   53 (274)
T ss_dssp             TTS--EEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCc--EEEEEeCCCCCHHHHHHHHHHHH
Confidence            355  78899999999999998776543

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=94.34  E-value=0.035  Score=43.57  Aligned_cols=32  Identities=25%  Similarity=0.251  Sum_probs=25.3

Q ss_pred             HhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          166 RCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       166 ~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      ..+.......|-|.|+.|+||||.+..+.+..
T Consensus       151 ~~l~~~~~GliLvtGpTGSGKSTTl~~~l~~~  182 (401)
T d1p9ra_         151 RRLIKRPHGIILVTGPTGSGKSTTLYAGLQEL  182 (401)
T ss_dssp             HHHHTSSSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             HHHHhhhhceEEEEcCCCCCccHHHHHHhhhh
Confidence            34444444599999999999999999888765

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=94.16  E-value=0.014  Score=43.37  Aligned_cols=26  Identities=31%  Similarity=0.391  Sum_probs=22.5

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945          173 EKVIGLYGMGGVGKTTLLKKLNNKFR  198 (206)
Q Consensus       173 ~~vI~IvG~~G~GKTTLa~~i~~~~~  198 (206)
                      .-.|+|+|++.+|||||++.+.+...
T Consensus       112 ~~~v~vvG~PNvGKSsliN~L~~~~~  137 (273)
T d1puja_         112 AIRALIIGIPNVGKSTLINRLAKKNI  137 (273)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTSCC
T ss_pred             ceEEEEEecCccchhhhhhhhhccce
Confidence            44699999999999999999988653

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.77  E-value=0.035  Score=41.26  Aligned_cols=25  Identities=48%  Similarity=0.744  Sum_probs=22.0

Q ss_pred             cCCCeEEEEEcCCCCcHHHHHHHHHhh
Q 037945          170 DHNEKVIGLYGMGGVGKTTLLKKLNNK  196 (206)
Q Consensus       170 ~~~~~vI~IvG~~G~GKTTLa~~i~~~  196 (206)
                      .++  .++|.|..|+|||||+..+.+.
T Consensus        67 kGQ--r~~If~~~g~GKt~l~~~i~~~   91 (276)
T d2jdid3          67 KGG--KIGLFGGAGVGKTVLIMELINN   91 (276)
T ss_dssp             TTC--EEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCC--EEEeeCCCCCCHHHHHHHHHHH
Confidence            366  8999999999999998888766

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=93.63  E-value=0.037  Score=39.10  Aligned_cols=37  Identities=8%  Similarity=0.148  Sum_probs=27.1

Q ss_pred             HHHHHHhhhc-CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          161 ISEVWRCIED-HNEKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       161 ~~~l~~~L~~-~~~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      +..+..+|.. ..-+.|.++|+++.|||+++..|.+..
T Consensus        40 l~~l~~~l~~~PKkn~i~~~GP~~TGKS~f~~sl~~~l   77 (205)
T d1tuea_          40 LGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFI   77 (205)
T ss_dssp             HHHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCCceEEEEECCCCccHHHHHHHHHHHh
Confidence            3344444443 344599999999999999999887765

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=93.49  E-value=0.026  Score=43.64  Aligned_cols=21  Identities=38%  Similarity=0.458  Sum_probs=17.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHH
Q 037945          174 KVIGLYGMGGVGKTTLLKKLN  194 (206)
Q Consensus       174 ~vI~IvG~~G~GKTTLa~~i~  194 (206)
                      ++.-|.|++|+||||++..+.
T Consensus       164 ~~~vI~G~pGTGKTt~i~~~l  184 (359)
T d1w36d1         164 RISVISGGPGTGKTTTVAKLL  184 (359)
T ss_dssp             SEEEEECCTTSTHHHHHHHHH
T ss_pred             CeEEEEcCCCCCceehHHHHH
Confidence            388899999999999886543

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=92.55  E-value=0.044  Score=40.42  Aligned_cols=24  Identities=29%  Similarity=0.479  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          174 KVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       174 ~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      +++-|+|++|+|||||+-.+....
T Consensus        55 ~itei~G~~gsGKTtl~l~~~~~~   78 (263)
T d1u94a1          55 RIVEIYGPESSGKTTLTLQVIAAA   78 (263)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             eEEEEecCCCcHHHHHHHHHHHHH
Confidence            399999999999999998876654

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=92.50  E-value=0.12  Score=38.13  Aligned_cols=35  Identities=17%  Similarity=0.263  Sum_probs=26.2

Q ss_pred             HHHHhhhc--CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          163 EVWRCIED--HNEKVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       163 ~l~~~L~~--~~~~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      .+..+|..  +.-..+-++|+|+.||||++..|..-.
T Consensus        92 ~l~~~L~~~~~k~n~~~l~G~~~tGKS~f~~~i~~~l  128 (267)
T d1u0ja_          92 VFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTV  128 (267)
T ss_dssp             HHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             HHHHHHcCCCCccEEEEEEcCCCCCHHHHHHHHHHHh
Confidence            34444532  345689999999999999999987654

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=92.47  E-value=0.052  Score=39.28  Aligned_cols=23  Identities=17%  Similarity=0.314  Sum_probs=20.0

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHH
Q 037945          172 NEKVIGLYGMGGVGKTTLLKKLN  194 (206)
Q Consensus       172 ~~~vI~IvG~~G~GKTTLa~~i~  194 (206)
                      +-+++-|.|+|..||||++|.|.
T Consensus        40 ~~~~~iiTGpN~~GKSt~lk~i~   62 (234)
T d1wb9a2          40 QRRMLIITGPNMGGKSTYMRQTA   62 (234)
T ss_dssp             SSCEEEEECCTTSSHHHHHHHHH
T ss_pred             CceEEEEeccCchhhHHHHHHHH
Confidence            34688999999999999999874

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=91.32  E-value=0.062  Score=39.70  Aligned_cols=24  Identities=29%  Similarity=0.419  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          174 KVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       174 ~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      +++-|+|++|+|||||+-.+....
T Consensus        58 ~itei~G~~~sGKT~l~l~~~~~a   81 (268)
T d1xp8a1          58 RITEIYGPESGGKTTLALAIVAQA   81 (268)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             eEEEEecCCccchHHHHHHHHHHH
Confidence            499999999999999998876554

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=90.68  E-value=0.076  Score=41.51  Aligned_cols=20  Identities=35%  Similarity=0.586  Sum_probs=17.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHH
Q 037945          175 VIGLYGMGGVGKTTLLKKLN  194 (206)
Q Consensus       175 vI~IvG~~G~GKTTLa~~i~  194 (206)
                      =+.|+|..|+|||++++.+.
T Consensus        52 H~~I~G~tGsGKT~~l~~li   71 (433)
T d1e9ra_          52 HLLVNGATGTGKSVLLRELA   71 (433)
T ss_dssp             CEEEEECTTSSHHHHHHHHH
T ss_pred             eEEEEeCCCCcHHHHHHHHH
Confidence            37999999999999987544

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=90.57  E-value=0.085  Score=38.96  Aligned_cols=24  Identities=33%  Similarity=0.437  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhhh
Q 037945          174 KVIGLYGMGGVGKTTLLKKLNNKF  197 (206)
Q Consensus       174 ~vI~IvG~~G~GKTTLa~~i~~~~  197 (206)
                      +++-|.|++|+|||||+-.++...
T Consensus        61 ~i~e~~G~~~~GKT~l~l~~~~~~   84 (269)
T d1mo6a1          61 RVIEIYGPESSGKTTVALHAVANA   84 (269)
T ss_dssp             SEEEEECSSSSSHHHHHHHHHHHH
T ss_pred             eeEEEecCCCcHHHHHHHHHHHHH
Confidence            399999999999999987766543

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=90.53  E-value=0.093  Score=37.63  Aligned_cols=20  Identities=25%  Similarity=0.418  Sum_probs=18.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHH
Q 037945          175 VIGLYGMGGVGKTTLLKKLN  194 (206)
Q Consensus       175 vI~IvG~~G~GKTTLa~~i~  194 (206)
                      ++-|.|+|..||||++|.|.
T Consensus        37 ~~iiTGpN~~GKSt~lk~i~   56 (224)
T d1ewqa2          37 LVLITGPNMAGKSTFLRQTA   56 (224)
T ss_dssp             EEEEESCSSSSHHHHHHHHH
T ss_pred             EEEEECCCccccchhhhhhH
Confidence            78899999999999999764

>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=89.79  E-value=0.13  Score=38.30  Aligned_cols=24  Identities=17%  Similarity=0.009  Sum_probs=20.2

Q ss_pred             cCCCeEEEEEcCCCCcHHHHHHHHHh
Q 037945          170 DHNEKVIGLYGMGGVGKTTLLKKLNN  195 (206)
Q Consensus       170 ~~~~~vI~IvG~~G~GKTTLa~~i~~  195 (206)
                      .++  .++|.|..|+|||+|+..+..
T Consensus        67 ~GQ--r~~If~~~g~GKt~ll~~~~~   90 (285)
T d2jdia3          67 RGQ--RELIIGDRQTGKTSIAIDTII   90 (285)
T ss_dssp             TTC--BCEEEESTTSSHHHHHHHHHH
T ss_pred             CCC--EEEeecCCCCChHHHHHHHHH
Confidence            366  899999999999999876653

>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Hel308 helicase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=85.84  E-value=0.21  Score=34.61  Aligned_cols=24  Identities=21%  Similarity=0.023  Sum_probs=17.2

Q ss_pred             hhhcCCCeEEEEEcCCCCcHHHHHHH
Q 037945          167 CIEDHNEKVIGLYGMGGVGKTTLLKK  192 (206)
Q Consensus       167 ~L~~~~~~vI~IvG~~G~GKTTLa~~  192 (206)
                      .+..+.  -+-|.++.|+|||+.+..
T Consensus        36 ~l~~~~--~~il~apTGsGKT~~a~l   59 (202)
T d2p6ra3          36 KVFSGK--NLLLAMPTAAGKTLLAEM   59 (202)
T ss_dssp             HHTTCS--CEEEECSSHHHHHHHHHH
T ss_pred             HHHcCC--CEEEEcCCCCchhHHHHH
Confidence            344444  456999999999987643

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=85.67  E-value=0.48  Score=28.82  Aligned_cols=24  Identities=29%  Similarity=0.510  Sum_probs=21.0

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhh
Q 037945          173 EKVIGLYGMGGVGKTTLLKKLNNK  196 (206)
Q Consensus       173 ~~vI~IvG~~G~GKTTLa~~i~~~  196 (206)
                      .+.|=++|.+|+|.+.||+.+.+.
T Consensus         8 ~~~ihfiGigG~GMs~LA~~L~~~   31 (96)
T d1p3da1           8 VQQIHFIGIGGAGMSGIAEILLNE   31 (96)
T ss_dssp             CCEEEEETTTSTTHHHHHHHHHHH
T ss_pred             CCEEEEEEECHHHHHHHHHHHHhC
Confidence            457889999999999999988765

>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

Probab=85.54  E-value=0.16  Score=37.63  Aligned_cols=23  Identities=17%  Similarity=0.016  Sum_probs=19.5

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHh
Q 037945          171 HNEKVIGLYGMGGVGKTTLLKKLNN  195 (206)
Q Consensus       171 ~~~~vI~IvG~~G~GKTTLa~~i~~  195 (206)
                      ++  .++|+|..|+|||+|+..+..
T Consensus        67 GQ--r~~Ifg~~g~GKt~l~~~~~~   89 (276)
T d1fx0a3          67 GQ--RELIIGDRQTGKTAVATDTIL   89 (276)
T ss_dssp             TC--BCBEEESSSSSHHHHHHHHHH
T ss_pred             Cc--eEeeccCCCCChHHHHHHHHh
Confidence            55  899999999999999986543

>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Transcription-repair coupling factor, TRCF
species: Escherichia coli [TaxId: 562]

Probab=84.29  E-value=5.2  Score=28.20  Aligned_cols=39  Identities=18%  Similarity=0.070  Sum_probs=31.7

Q ss_pred             chHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHH
Q 037945          156 GLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLN  194 (206)
Q Consensus       156 g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~  194 (206)
                      ......++|...+..+.....-+.|..|+|||-.+-...
T Consensus        59 ~Q~~~~~~i~~~~~~~~~~~~LL~GdvGsGKT~V~~~a~   97 (233)
T d2eyqa3          59 DQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAA   97 (233)
T ss_dssp             HHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhccCccCeEEEcCCCCCcHHHHHHHH
Confidence            455677888888888887789999999999998876543