Citrus Sinensis ID: 037951
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 627 | 2.2.26 [Sep-21-2011] | |||||||
| C0LGP4 | 1010 | Probable LRR receptor-lik | yes | no | 0.955 | 0.593 | 0.436 | 1e-126 | |
| C0LGT6 | 1031 | LRR receptor-like serine/ | no | no | 0.968 | 0.588 | 0.432 | 1e-122 | |
| Q9SD62 | 1025 | Putative receptor-like pr | no | no | 0.955 | 0.584 | 0.448 | 1e-108 | |
| Q9FL28 | 1173 | LRR receptor-like serine/ | no | no | 0.902 | 0.482 | 0.352 | 3e-83 | |
| Q9LHP4 | 1141 | Receptor-like protein kin | no | no | 0.814 | 0.447 | 0.359 | 6e-75 | |
| Q8VZG8 | 1045 | Probable LRR receptor-lik | no | no | 0.862 | 0.517 | 0.327 | 4e-73 | |
| Q9SHI2 | 1101 | Leucine-rich repeat recep | no | no | 0.853 | 0.485 | 0.344 | 1e-72 | |
| Q9FIZ3 | 1252 | LRR receptor-like serine/ | no | no | 0.854 | 0.428 | 0.333 | 2e-72 | |
| Q9M2Z1 | 1002 | Leucine-rich repeat recep | no | no | 0.913 | 0.571 | 0.345 | 3e-72 | |
| Q9LVP0 | 1102 | Probable leucine-rich rep | no | no | 0.826 | 0.470 | 0.357 | 4e-72 |
| >sp|C0LGP4|Y3475_ARATH Probable LRR receptor-like serine/threonine-protein kinase At3g47570 OS=Arabidopsis thaliana GN=At3g47570 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 452 bits (1164), Expect = e-126, Method: Compositional matrix adjust.
Identities = 268/614 (43%), Positives = 370/614 (60%), Gaps = 15/614 (2%)
Query: 8 LLQVAAF-EEGDLAALQAFKSMISHDPQGILNSWNDSRHFCEWEGITCDLRSK------- 59
LL+ F +E D AL FKS +S D + +L+SWN S C W+G+TC ++K
Sbjct: 14 LLETHGFTDETDRQALLQFKSQVSEDKRVVLSSWNHSFPLCNWKGVTCGRKNKRVTHLEL 73
Query: 60 ---ALSGLLSPQIGNLSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPAN 116
L G++SP IGNLSFL ++L N G IP E G+L RLE L + N L G IP
Sbjct: 74 GRLQLGGVISPSIGNLSFLVSLDLYENFFGGTIPQEVGQLSRLEYLDMGINYLRGPIPLG 133
Query: 117 LSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTGGIPPFLGNLTSLEVVSL 176
L CSRL L L +N+L GS+P E SL L QL L NN+ G +P LGNLT LE ++L
Sbjct: 134 LYNCSRLLNLRLDSNRLGGSVPSELGSLTNLVQLNLYGNNMRGKLPTSLGNLTLLEQLAL 193
Query: 177 AGNPFGGNIPDSLGQLKELKTLGIGGNNLSGSIPPSIYNLSFLVIFSVSENQMHGSLPPS 236
+ N G IP + QL ++ +L + NN SG PP++YNLS L + + N G L P
Sbjct: 194 SHNNLEGEIPSDVAQLTQIWSLQLVANNFSGVFPPALYNLSSLKLLGIGYNHFSGRLRPD 253
Query: 237 LGLYFPNLKLFQTNENFFSGSIPISLSNASKLEYVEIASNSFFGKLSVNFGGMKNLSYLI 296
LG+ PNL F N+F+GSIP +LSN S LE + + N+ G + FG + NL L
Sbjct: 254 LGILLPNLLSFNMGGNYFTGSIPTTLSNISTLERLGMNENNLTGSIPT-FGNVPNLKLLF 312
Query: 297 LEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLSSQLQILVLGTNQ 356
L N+LGS S ++ F+ SL NC++L+ L +G N+ G LP SIANLS++L L LG
Sbjct: 313 LHTNSLGSDSSRDLEFLTSLTNCTQLETLGIGRNRLGGDLPISIANLSAKLVTLDLGGTL 372
Query: 357 LYGSIPSGIGNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLGNL 416
+ GSIP IGNL+NL L ++N +G +P +GKLLNL+ L N SG IP+ +GN+
Sbjct: 373 ISGSIPYDIGNLINLQKLILDQNMLSGPLPTSLGKLLNLRYLSLFSNRLSGGIPAFIGNM 432
Query: 417 SSLYEIFLGDNNLSGVIPSSLGNLERLAILEMFANELSGTIPGDIFNISSLSVSLDLAEN 476
+ L + L +N G++P+SLGN L L + N+L+GTIP +I I L + LD++ N
Sbjct: 433 TMLETLDLSNNGFEGIVPTSLGNCSHLLELWIGDNKLNGTIPLEIMKIQQL-LRLDMSGN 491
Query: 477 HFVGSIPPRIGNLKALRCFDVSNNDLSGEIPSELGLCSSLEEIYLAENFFNGFIPSFFRT 536
+GS+P IG L+ L + +N LSG++P LG C ++E ++L N F G IP +
Sbjct: 492 SLIGSLPQDIGALQNLGTLSLGDNKLSGKLPQTLGNCLTMESLFLEGNLFYGDIPD-LKG 550
Query: 537 SRGIRKVDLSRNNFFGQIPIFLEALS-LEYLNLSFNDFEGRLPTRGIFANASAISVGGCN 595
G+++VDLS N+ G IP + + S LEYLNLSFN+ EG++P +GIF NA+ +S+ G N
Sbjct: 551 LVGVKEVDLSNNDLSGSIPEYFASFSKLEYLNLSFNNLEGKVPVKGIFENATTVSIVGNN 610
Query: 596 RLCGGIHELQLPKC 609
LCGGI QL C
Sbjct: 611 DLCGGIMGFQLKPC 624
|
Arabidopsis thaliana (taxid: 3702) EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1 |
| >sp|C0LGT6|EFR_ARATH LRR receptor-like serine/threonine-protein kinase EFR OS=Arabidopsis thaliana GN=EFR PE=1 SV=1 | Back alignment and function description |
|---|
Score = 438 bits (1126), Expect = e-122, Method: Compositional matrix adjust.
Identities = 271/627 (43%), Positives = 373/627 (59%), Gaps = 20/627 (3%)
Query: 8 LLQVAAFE------EGDLAALQAFKSMIS-HDPQGILNSWNDSRHFCEWEGITCDLRSK- 59
LLQV F E D+ AL FKS +S ++ + +L SWN S FC W G+TC R +
Sbjct: 15 LLQVCIFAQARFSNETDMQALLEFKSQVSENNKREVLASWNHSSPFCNWIGVTCGRRRER 74
Query: 60 ---------ALSGLLSPQIGNLSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLV 110
L+G++SP IGNLSFLR +NL +N+ IP + GRL RL+ L +S N L
Sbjct: 75 VISLNLGGFKLTGVISPSIGNLSFLRLLNLADNSFGSTIPQKVGRLFRLQYLNMSYNLLE 134
Query: 111 GKIPANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTGGIPPFLGNLTS 170
G+IP++LS CSRL+ + L +N L +P E SL KL L L NNLTG P LGNLTS
Sbjct: 135 GRIPSSLSNCSRLSTVDLSSNHLGHGVPSELGSLSKLAILDLSKNNLTGNFPASLGNLTS 194
Query: 171 LEVVSLAGNPFGGNIPDSLGQLKELKTLGIGGNNLSGSIPPSIYNLSFLVIFSVSENQMH 230
L+ + A N G IPD + +L ++ I N+ SG PP++YN+S L S+++N
Sbjct: 195 LQKLDFAYNQMRGEIPDEVARLTQMVFFQIALNSFSGGFPPALYNISSLESLSLADNSFS 254
Query: 231 GSLPPSLGLYFPNLKLFQTNENFFSGSIPISLSNASKLEYVEIASNSFFGKLSVNFGGMK 290
G+L G PNL+ N F+G+IP +L+N S LE +I+SN G + ++FG ++
Sbjct: 255 GNLRADFGYLLPNLRRLLLGTNQFTGAIPKTLANISSLERFDISSNYLSGSIPLSFGKLR 314
Query: 291 NLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLSSQLQIL 350
NL +L + N+LG+ S + F+ ++ANC++L+ L +G N+ G LP SIANLS+ L L
Sbjct: 315 NLWWLGIRNNSLGNNSSSGLEFIGAVANCTQLEYLDVGYNRLGGELPASIANLSTTLTSL 374
Query: 351 VLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIP 410
LG N + G+IP IGNLV+L L E N +G +P GKLLNLQ +D N SGEIP
Sbjct: 375 FLGQNLISGTIPHDIGNLVSLQELSLETNMLSGELPVSFGKLLNLQVVDLYSNAISGEIP 434
Query: 411 STLGNLSSLYEIFLGDNNLSGVIPSSLGNLERLAILEMFANELSGTIPGDIFNISSLSVS 470
S GN++ L ++ L N+ G IP SLG L L M N L+GTIP +I I SL+
Sbjct: 435 SYFGNMTRLQKLHLNSNSFHGRIPQSLGRCRYLLDLWMDTNRLNGTIPQEILQIPSLAY- 493
Query: 471 LDLAENHFVGSIPPRIGNLKALRCFDVSNNDLSGEIPSELGLCSSLEEIYLAENFFNGFI 530
+DL+ N G P +G L+ L S N LSG++P +G C S+E +++ N F+G I
Sbjct: 494 IDLSNNFLTGHFPEEVGKLELLVGLGASYNKLSGKMPQAIGGCLSMEFLFMQGNSFDGAI 553
Query: 531 PSFFRTSRGIRKVDLSRNNFFGQIPIFLEAL-SLEYLNLSFNDFEGRLPTRGIFANASAI 589
P R ++ VD S NN G+IP +L +L SL LNLS N FEGR+PT G+F NA+A+
Sbjct: 554 PDISRLV-SLKNVDFSNNNLSGRIPRYLASLPSLRNLNLSMNKFEGRVPTTGVFRNATAV 612
Query: 590 SVGGCNRLCGGIHELQLPKCPEHESSR 616
SV G +CGG+ E+QL C S R
Sbjct: 613 SVFGNTNICGGVREMQLKPCIVQASPR 639
|
Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of elongation factor Tu (EF-Tu), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Reduces transformation by Rhizobium radiobacter probably by inducing plant defense during the interaction. Binding to the effector AvrPto1 from P.syringae blocks the downstream plant immune response. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q9SD62|Y3471_ARATH Putative receptor-like protein kinase At3g47110 OS=Arabidopsis thaliana GN=At3g47110 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 394 bits (1012), Expect = e-108, Method: Compositional matrix adjust.
Identities = 276/616 (44%), Positives = 369/616 (59%), Gaps = 17/616 (2%)
Query: 15 EEGDLAALQAFKSMISHDPQGILNSWNDSRHFCEWEGITCDLRSK----------ALSGL 64
EE D AL FKS +S + +L SWNDS C W G+ C L+ + L+G+
Sbjct: 37 EETDKQALLEFKSQVSETSRVVLGSWNDSLPLCSWTGVKCGLKHRRVTGVDLGGLKLTGV 96
Query: 65 LSPQIGNLSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLT 124
+SP +GNLSFLR +NL +N G IP E G L RL+ L +S+N G IP LS CS L+
Sbjct: 97 VSPFVGNLSFLRSLNLADNFFHGAIPSEVGNLFRLQYLNMSNNLFGGVIPVVLSNCSSLS 156
Query: 125 VLVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTGGIPPFLGNLTSLEVVSLAGNPFGGN 184
L L +N L +P EF SL KL L+L NNLTG P LGNLTSL+++ N G
Sbjct: 157 TLDLSSNHLEQGVPLEFGSLSKLVLLSLGRNNLTGKFPASLGNLTSLQMLDFIYNQIEGE 216
Query: 185 IPDSLGQLKELKTLGIGGNNLSGSIPPSIYNLSFLVIFSVSENQMHGSLPPSLGLYFPNL 244
IP + +LK++ I N +G PP IYNLS L+ S++ N G+L P G PNL
Sbjct: 217 IPGDIARLKQMIFFRIALNKFNGVFPPPIYNLSSLIFLSITGNSFSGTLRPDFGSLLPNL 276
Query: 245 KLFQTNENFFSGSIPISLSNASKLEYVEIASNSFFGKLSVNFGGMKNLSYLILEYNNLGS 304
++ N F+G+IP +LSN S L ++I SN GK+ ++FG ++NL L L N+LG+
Sbjct: 277 QILYMGINSFTGTIPETLSNISSLRQLDIPSNHLTGKIPLSFGRLQNLLLLGLNNNSLGN 336
Query: 305 GESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLSSQLQILVLGTNQLYGSIPSG 364
S ++ F+ +L NCS+LQ L++G N+ G LP IANLS+QL L LG N + GSIP G
Sbjct: 337 YSSGDLDFLGALTNCSQLQYLNVGFNKLGGQLPVFIANLSTQLTELSLGGNLISGSIPHG 396
Query: 365 IGNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFL 424
IGNLV+L +L EN TG +P +G+L L+ + N SGEIPS+LGN+S L ++L
Sbjct: 397 IGNLVSLQTLDLGENLLTGKLPPSLGELSELRKVLLYSNGLSGEIPSSLGNISGLTYLYL 456
Query: 425 GDNNLSGVIPSSLGNLERLAILEMFANELSGTIPGDIFNISSLSVSLDLAENHFVGSIPP 484
+N+ G IPSSLG+ L L + N+L+G+IP ++ + SL V L+++ N VG +
Sbjct: 457 LNNSFEGSIPSSLGSCSYLLDLNLGTNKLNGSIPHELMELPSL-VVLNVSFNLLVGPLRQ 515
Query: 485 RIGNLKALRCFDVSNNDLSGEIPSELGLCSSLEEIYLAENFFNGFIPSFFRTSRGIRKVD 544
IG LK L DVS N LSG+IP L C SLE + L N F G IP R G+R +D
Sbjct: 516 DIGKLKFLLALDVSYNKLSGQIPQTLANCLSLEFLLLQGNSFVGPIPD-IRGLTGLRFLD 574
Query: 545 LSRNNFFGQIPIFLEALS-LEYLNLSFNDFEGRLPTRGIFANASAISVGGCNRLCGGIHE 603
LS+NN G IP ++ S L+ LNLS N+F+G +PT G+F N SA+SV G LCGGI
Sbjct: 575 LSKNNLSGTIPEYMANFSKLQNLNLSLNNFDGAVPTEGVFRNTSAMSVFGNINLCGGIPS 634
Query: 604 LQLPKC----PEHESS 615
LQL C P SS
Sbjct: 635 LQLQPCSVELPRRHSS 650
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q9FL28|FLS2_ARATH LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 310 bits (793), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 216/613 (35%), Positives = 317/613 (51%), Gaps = 47/613 (7%)
Query: 2 FLFFITLLQVAAFEEGDLAALQAFKSMISHDPQGILNSWN--DSRHFCEWEGITCD---- 55
F FF L +FE ++ AL++FK+ IS+DP G+L+ W S C W GITCD
Sbjct: 15 FFFFGIALAKQSFEP-EIEALKSFKNGISNDPLGVLSDWTIIGSLRHCNWTGITCDSTGH 73
Query: 56 -----LRSKALSGLLSPQIGNLSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLV 110
L K L G+LSP I NL++L+ ++L +N+ G+IP E G+L L L+L N
Sbjct: 74 VVSVSLLEKQLEGVLSPAIANLTYLQVLDLTSNSFTGKIPAEIGKLTELNQLILYLNYFS 133
Query: 111 GKIPANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTGGIPPFLGNLTS 170
G IP+ + + L L NN L G +P E L + NNLTG IP LG+L
Sbjct: 134 GSIPSGIWELKNIFYLDLRNNLLSGDVPEEICKTSSLVLIGFDYNNLTGKIPECLGDLVH 193
Query: 171 LEVVSLAGNPFGGNIPDSLGQLKELKTLGIGGNNLSGSIPPSIYNLSFLVIFSVSENQMH 230
L++ AGN G+IP S+G L L L + GN L+G IP NL L ++EN +
Sbjct: 194 LQMFVAAGNHLTGSIPVSIGTLANLTDLDLSGNQLTGKIPRDFGNLLNLQSLVLTENLLE 253
Query: 231 GSLPPSLGLYFPNLKLFQTNENFFSGSIPISLSNASKLEYVEIASNSFFGKLSVNFGGMK 290
G +P +G +L + +N +G IP L N +L+ + I N + + +
Sbjct: 254 GDIPAEIG-NCSSLVQLELYDNQLTGKIPAELGNLVQLQALRIYKNKLTSSIPSSLFRLT 312
Query: 291 NLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLSSQLQIL 350
L++L L N+L S+E+GF+ S L+VL+L N F G P SI NL + L +L
Sbjct: 313 QLTHLGLSENHLVGPISEEIGFLES------LEVLTLHSNNFTGEFPQSITNLRN-LTVL 365
Query: 351 VLGTNQLYGSIPSGIGNLVNLYSLQTEE------------------------NQFTGSIP 386
+G N + G +P+ +G L NL +L + NQ TG IP
Sbjct: 366 TVGFNNISGELPADLGLLTNLRNLSAHDNLLTGPIPSSISNCTGLKLLDLSHNQMTGEIP 425
Query: 387 KEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLGDNNLSGVIPSSLGNLERLAIL 446
+ G+ +NL + G NHF+GEIP + N S+L + + DNNL+G + +G L++L IL
Sbjct: 426 RGFGR-MNLTFISIGRNHFTGEIPDDIFNCSNLETLSVADNNLTGTLKPLIGKLQKLRIL 484
Query: 447 EMFANELSGTIPGDIFNISSLSVSLDLAENHFVGSIPPRIGNLKALRCFDVSNNDLSGEI 506
++ N L+G IP +I N+ L++ L L N F G IP + NL L+ + +NDL G I
Sbjct: 485 QVSYNSLTGPIPREIGNLKDLNI-LYLHSNGFTGRIPREMSNLTLLQGLRMYSNDLEGPI 543
Query: 507 PSELGLCSSLEEIYLAENFFNGFIPSFFRTSRGIRKVDLSRNNFFGQIPIFLEALS-LEY 565
P E+ L + L+ N F+G IP+ F + + L N F G IP L++LS L
Sbjct: 544 PEEMFDMKLLSVLDLSNNKFSGQIPALFSKLESLTYLSLQGNKFNGSIPASLKSLSLLNT 603
Query: 566 LNLSFNDFEGRLP 578
++S N G +P
Sbjct: 604 FDISDNLLTGTIP 616
|
Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of flagellin (flg22), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Flagellin-binding to the receptor is the first step to initiate the innate immune MAP kinase signaling cascade (MEKK1, MKK4/MKK5 and MPK3/MPK6), resulting in enhanced resistance against pathogens. Binding to the effector AvrPto1 from Pseudomonas syringae blocks the downstream plant immune response. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q9LHP4|RCH2_ARATH Receptor-like protein kinase 2 OS=Arabidopsis thaliana GN=RCH2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 282 bits (721), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 188/523 (35%), Positives = 292/523 (55%), Gaps = 12/523 (2%)
Query: 61 LSGLLSPQIGNLSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPANLSYC 120
L+G L +G+ L+ ++L +N + G+IP +LR LETL+L+ N L GKIP ++S C
Sbjct: 117 LTGTLPESLGDCLGLKVLDLSSNGLVGDIPWSLSKLRNLETLILNSNQLTGKIPPDISKC 176
Query: 121 SRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPMNN-LTGGIPPFLGNLTSLEVVSLAGN 179
S+L L+L +N L GSIP E L L+ + + N ++G IP +G+ ++L V+ LA
Sbjct: 177 SKLKSLILFDNLLTGSIPTELGKLSGLEVIRIGGNKEISGQIPSEIGDCSNLTVLGLAET 236
Query: 180 PFGGNIPDSLGQLKELKTLGIGGNNLSGSIPPSIYNLSFLVIFSVSENQMHGSLPPSLGL 239
GN+P SLG+LK+L+TL I +SG IP + N S LV + EN + GS+P +G
Sbjct: 237 SVSGNLPSSLGKLKKLETLSIYTTMISGEIPSDLGNCSELVDLFLYENSLSGSIPREIGQ 296
Query: 240 YFPNLKLFQTNENFFSGSIPISLSNASKLEYVEIASNSFFGKLSVNFGGMKNLSYLILEY 299
+LF +N G IP + N S L+ ++++ N G + + G + L ++
Sbjct: 297 LTKLEQLFLW-QNSLVGGIPEEIGNCSNLKMIDLSLNLLSGSIPSSIGRLSFLEEFMISD 355
Query: 300 NNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLSSQLQILVLGTNQLYG 359
N +++NCS L L L NQ G +P + L+ +L + +NQL G
Sbjct: 356 NKFSGS------IPTTISNCSSLVQLQLDKNQISGLIPSELGTLT-KLTLFFAWSNQLEG 408
Query: 360 SIPSGIGNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSL 419
SIP G+ + +L +L N TG+IP + L NL L N SG IP +GN SSL
Sbjct: 409 SIPPGLADCTDLQALDLSRNSLTGTIPSGLFMLRNLTKLLLISNSLSGFIPQEIGNCSSL 468
Query: 420 YEIFLGDNNLSGVIPSSLGNLERLAILEMFANELSGTIPGDIFNISSLSVSLDLAENHFV 479
+ LG N ++G IPS +G+L+++ L+ +N L G +P +I + S L + +DL+ N
Sbjct: 469 VRLRLGFNRITGEIPSGIGSLKKINFLDFSSNRLHGKVPDEIGSCSELQM-IDLSNNSLE 527
Query: 480 GSIPPRIGNLKALRCFDVSNNDLSGEIPSELGLCSSLEEIYLAENFFNGFIPSFFRTSRG 539
GS+P + +L L+ DVS N SG+IP+ LG SL ++ L++N F+G IP+ G
Sbjct: 528 GSLPNPVSSLSGLQVLDVSANQFSGKIPASLGRLVSLNKLILSKNLFSGSIPTSLGMCSG 587
Query: 540 IRKVDLSRNNFFGQIPIFL-EALSLEY-LNLSFNDFEGRLPTR 580
++ +DL N G+IP L + +LE LNLS N G++P++
Sbjct: 588 LQLLDLGSNELSGEIPSELGDIENLEIALNLSSNRLTGKIPSK 630
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q8VZG8|Y4885_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g08850 OS=Arabidopsis thaliana GN=At4g08850 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 276 bits (706), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 181/553 (32%), Positives = 288/553 (52%), Gaps = 12/553 (2%)
Query: 55 DLRSKALSGLLSPQIGNLSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIP 114
DL L G + P++G+LS L ++L+ N + G IP E GRL ++ + + DN L G IP
Sbjct: 148 DLSINQLVGEIPPELGDLSNLDTLHLVENKLNGSIPSEIGRLTKVTEIAIYDNLLTGPIP 207
Query: 115 ANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTGGIPPFLGNLTSLEVV 174
++ ++L L L N L GSIP E +L L++L L NNLTG IP GNL ++ ++
Sbjct: 208 SSFGNLTKLVNLYLFINSLSGSIPSEIGNLPNLRELCLDRNNLTGKIPSSFGNLKNVTLL 267
Query: 175 SLAGNPFGGNIPDSLGQLKELKTLGIGGNNLSGSIPPSIYNLSFLVIFSVSENQMHGSLP 234
++ N G IP +G + L TL + N L+G IP ++ N+ L + + NQ++GS+P
Sbjct: 268 NMFENQLSGEIPPEIGNMTALDTLSLHTNKLTGPIPSTLGNIKTLAVLHLYLNQLNGSIP 327
Query: 235 PSLGLYFPNLKLFQTNENFFSGSIPISLSNASKLEYVEIASNSFFGKLSVNFGGMKNLSY 294
P LG + L + +EN +G +P S + LE++ + N G + L+
Sbjct: 328 PELGEMESMIDL-EISENKLTGPVPDSFGKLTALEWLFLRDNQLSGPIPPGIANSTELTV 386
Query: 295 LILEYNNLGSGESDEMGFM-NSLANCSKLQVLSLGGNQFRGALPHSIANLSSQLQILVLG 353
L L+ NN GF+ +++ KL+ L+L N F G +P S+ + S +++ G
Sbjct: 387 LQLDTNNF-------TGFLPDTICRGGKLENLTLDDNHFEGPVPKSLRDCKSLIRVRFKG 439
Query: 354 TNQLYGSIPSGIGNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIPSTL 413
N G I G L + N F G + + L N +G IP +
Sbjct: 440 -NSFSGDISEAFGVYPTLNFIDLSNNNFHGQLSANWEQSQKLVAFILSNNSITGAIPPEI 498
Query: 414 GNLSSLYEIFLGDNNLSGVIPSSLGNLERLAILEMFANELSGTIPGDIFNISSLSVSLDL 473
N++ L ++ L N ++G +P S+ N+ R++ L++ N LSG IP I +++L LDL
Sbjct: 499 WNMTQLSQLDLSSNRITGELPESISNINRISKLQLNGNRLSGKIPSGIRLLTNLEY-LDL 557
Query: 474 AENHFVGSIPPRIGNLKALRCFDVSNNDLSGEIPSELGLCSSLEEIYLAENFFNGFIPSF 533
+ N F IPP + NL L ++S NDL IP L S L+ + L+ N +G I S
Sbjct: 558 SSNRFSSEIPPTLNNLPRLYYMNLSRNDLDQTIPEGLTKLSQLQMLDLSYNQLDGEISSQ 617
Query: 534 FRTSRGIRKVDLSRNNFFGQI-PIFLEALSLEYLNLSFNDFEGRLPTRGIFANASAISVG 592
FR+ + + ++DLS NN GQI P F + L+L ++++S N+ +G +P F NA +
Sbjct: 618 FRSLQNLERLDLSHNNLSGQIPPSFKDMLALTHVDVSHNNLQGPIPDNAAFRNAPPDAFE 677
Query: 593 GCNRLCGGIHELQ 605
G LCG ++ Q
Sbjct: 678 GNKDLCGSVNTTQ 690
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q9SHI2|Y1723_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 OS=Arabidopsis thaliana GN=At1g17230 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 274 bits (701), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 196/569 (34%), Positives = 276/569 (48%), Gaps = 34/569 (5%)
Query: 15 EEGDLAALQAFKSMISHDPQGILNSWND-SRHFCEWEGITC---------DLRSKALSGL 64
EEG + L FK+ + +D G L SWN + C W GI C DL LSG
Sbjct: 26 EEGRV--LLEFKAFL-NDSNGYLASWNQLDSNPCNWTGIACTHLRTVTSVDLNGMNLSGT 82
Query: 65 LSPQIGNLSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLT 124
LSP I L LR++N+ N I G IP + R LE L L N G IP L+ L
Sbjct: 83 LSPLICKLHGLRKLNVSTNFISGPIPQDLSLCRSLEVLDLCTNRFHGVIPIQLTMIITLK 142
Query: 125 VLVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTGGIPPFLGNLTSLEVVSLAGNPFGGN 184
L L N L GSIP + +L L++L + NNLTG IPP + L L ++ N F G
Sbjct: 143 KLYLCENYLFGSIPRQIGNLSSLQELVIYSNNLTGVIPPSMAKLRQLRIIRAGRNGFSGV 202
Query: 185 IPDSLGQLKELKTLGIGGNNLSGSIPPSIYNLSFLVIFSVSENQMHGSLPPSLGLYFPNL 244
IP + + LK LG+ N L GS+P + L L + +N++ G +PPS+G L
Sbjct: 203 IPSEISGCESLKVLGLAENLLEGSLPKQLEKLQNLTDLILWQNRLSGEIPPSVG-NISRL 261
Query: 245 KLFQTNENFFSGSIPISLSNASKLEYVEIASNSFFGKLSVNFGGMKNLSYLILEYNNLGS 304
++ +EN+F+GSIP + +K++ + + +N G++ G + + + + N L
Sbjct: 262 EVLALHENYFTGSIPREIGKLTKMKRLYLYTNQLTGEIPREIGNLIDAAEIDFSENQLTG 321
Query: 305 GESDEMGFM------------------NSLANCSKLQVLSLGGNQFRGALPHSIANLSSQ 346
E G + L + L+ L L N+ G +P + L
Sbjct: 322 FIPKEFGHILNLKLLHLFENILLGPIPRELGELTLLEKLDLSINRLNGTIPQELQFL-PY 380
Query: 347 LQILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFS 406
L L L NQL G IP IG N L N +G IP + L L G N S
Sbjct: 381 LVDLQLFDNQLEGKIPPLIGFYSNFSVLDMSANSLSGPIPAHFCRFQTLILLSLGSNKLS 440
Query: 407 GEIPSTLGNLSSLYEIFLGDNNLSGVIPSSLGNLERLAILEMFANELSGTIPGDIFNISS 466
G IP L SL ++ LGDN L+G +P L NL+ L LE+ N LSG I D+ + +
Sbjct: 441 GNIPRDLKTCKSLTKLMLGDNQLTGSLPIELFNLQNLTALELHQNWLSGNISADLGKLKN 500
Query: 467 LSVSLDLAENHFVGSIPPRIGNLKALRCFDVSNNDLSGEIPSELGLCSSLEEIYLAENFF 526
L L LA N+F G IPP IGNL + F++S+N L+G IP ELG C +++ + L+ N F
Sbjct: 501 LE-RLRLANNNFTGEIPPEIGNLTKIVGFNISSNQLTGHIPKELGSCVTIQRLDLSGNKF 559
Query: 527 NGFIPSFFRTSRGIRKVDLSRNNFFGQIP 555
+G+I + + LS N G+IP
Sbjct: 560 SGYIAQELGQLVYLEILRLSDNRLTGEIP 588
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q9FIZ3|GSO2_ARATH LRR receptor-like serine/threonine-protein kinase GSO2 OS=Arabidopsis thaliana GN=GSO2 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 273 bits (699), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 207/621 (33%), Positives = 308/621 (49%), Gaps = 85/621 (13%)
Query: 53 TCDLRSKALSGLLSPQIGNLSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGK 112
T +L + SG + Q+G+L ++ +NL+ N +QG IP L L+TL LS N+L G
Sbjct: 244 TLNLGDNSFSGEIPSQLGDLVSIQYLNLIGNQLQGLIPKRLTELANLQTLDLSSNNLTGV 303
Query: 113 IPANLSYCSRLTVLVLGNNKLVGSIPFEFVSL-YKLKQLALPMNNLTGGIPPFLGNLTSL 171
I ++L LVL N+L GS+P S LKQL L L+G IP + N SL
Sbjct: 304 IHEEFWRMNQLEFLVLAKNRLSGSLPKTICSNNTSLKQLFLSETQLSGEIPAEISNCQSL 363
Query: 172 EVVSLAGNPFGGNIPDSLGQLKELKTLGIGGNNLSGSIPPSIYNLSFLVIFSVSENQMHG 231
+++ L+ N G IPDSL QL EL L + N+L G++ SI NL+ L F++ N + G
Sbjct: 364 KLLDLSNNTLTGQIPDSLFQLVELTNLYLNNNSLEGTLSSSISNLTNLQEFTLYHNNLEG 423
Query: 232 SLPPSLGLYFPNLKLFQTNENFFSGSIPISLSNASKLEYVEIASNSFFGKLSVNFGGMKN 291
+P +G + L++ EN FSG +P+ + N ++L+ ++ N G++ + G +K+
Sbjct: 424 KVPKEIG-FLGKLEIMYLYENRFSGEMPVEIGNCTRLQEIDWYGNRLSGEIPSSIGRLKD 482
Query: 292 LSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLSSQLQILV 351
L+ L L N L SL NC ++ V+ L NQ G++P S L++ L++ +
Sbjct: 483 LTRLHLRENELVGN------IPASLGNCHQMTVIDLADNQLSGSIPSSFGFLTA-LELFM 535
Query: 352 LGTNQLYGSIPSGIGNLVNLY-----------------------SLQTEENQFTGSIPKE 388
+ N L G++P + NL NL S EN F G IP E
Sbjct: 536 IYNNSLQGNLPDSLINLKNLTRINFSSNKFNGSISPLCGSSSYLSFDVTENGFEGDIPLE 595
Query: 389 MGKLLNLQGLDFGGNHFSGEIPSTLGNLS------------------------SLYEIFL 424
+GK NL L G N F+G IP T G +S L I L
Sbjct: 596 LGKSTNLDRLRLGKNQFTGRIPRTFGKISELSLLDISRNSLSGIIPVELGLCKKLTHIDL 655
Query: 425 GDNNLSGVIPSSLGNLERLAILEMFANELSGTIPGDIFNISSLSVSLDLAENHFVGSIPP 484
+N LSGVIP+ LG L L L++ +N+ G++P +IF+++++ ++L L N GSIP
Sbjct: 656 NNNYLSGVIPTWLGKLPLLGELKLSSNKFVGSLPTEIFSLTNI-LTLFLDGNSLNGSIPQ 714
Query: 485 RIGNLKALRCFDVSNNDLSGEIPSELGLCSSLEEIYLAENF------------------- 525
IGNL+AL ++ N LSG +PS +G S L E+ L+ N
Sbjct: 715 EIGNLQALNALNLEENQLSGPLPSTIGKLSKLFELRLSRNALTGEIPVEIGQLQDLQSAL 774
Query: 526 ------FNGFIPSFFRTSRGIRKVDLSRNNFFGQIPIFL-EALSLEYLNLSFNDFEGRLP 578
F G IPS T + +DLS N G++P + + SL YLNLS+N+ EG+L
Sbjct: 775 DLSYNNFTGRIPSTISTLPKLESLDLSHNQLVGEVPGQIGDMKSLGYLNLSYNNLEGKLK 834
Query: 579 TRGIFANASAISVGGCNRLCG 599
+ F+ A + G LCG
Sbjct: 835 KQ--FSRWQADAFVGNAGLCG 853
|
Together with GSO1, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons. Involved in the nuclear division phase of megagametogenesis. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q9M2Z1|BAME2_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM2 OS=Arabidopsis thaliana GN=BAM2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 273 bits (698), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 206/597 (34%), Positives = 306/597 (51%), Gaps = 24/597 (4%)
Query: 18 DLAALQAFKSMISHDPQG-ILNSWNDSRHFCEWEGITCDLRSKA----------LSGLLS 66
+L AL + KS + D +L SWN S FC W G+TCD+ + LSG LS
Sbjct: 27 ELHALLSLKSSFTIDEHSPLLTSWNLSTTFCSWTGVTCDVSLRHVTSLDLSGLNLSGTLS 86
Query: 67 PQIGNLSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPANLSY-CSRLTV 125
+ +L L+ ++L N I G IP + L L L LS+N G P LS L V
Sbjct: 87 SDVAHLPLLQNLSLAANQISGPIPPQISNLYELRHLNLSNNVFNGSFPDELSSGLVNLRV 146
Query: 126 LVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTGGIPPFLGNLTSLEVVSLAGNPFGGNI 185
L L NN L G +P +L +L+ L L N +G IP G LE ++++GN G I
Sbjct: 147 LDLYNNNLTGDLPVSLTNLTQLRHLHLGGNYFSGKIPATYGTWPVLEYLAVSGNELTGKI 206
Query: 186 PDSLGQLKELKTLGIGG-NNLSGSIPPSIYNLSFLVIFSVSENQMHGSLPPSLGLYFPNL 244
P +G L L+ L IG N +PP I NLS LV F + + G +PP +G L
Sbjct: 207 PPEIGNLTTLRELYIGYYNAFENGLPPEIGNLSELVRFDAANCGLTGEIPPEIG-KLQKL 265
Query: 245 KLFQTNENFFSGSIPISLSNASKLEYVEIASNSFFGKLSVNFGGMKNLSYLILEYNNLGS 304
N F+G+I L S L+ +++++N F G++ +F +KNL+ L L N L
Sbjct: 266 DTLFLQVNAFTGTITQELGLISSLKSMDLSNNMFTGEIPTSFSQLKNLTLLNLFRNKLYG 325
Query: 305 GESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLSSQLQILVLGTNQLYGSIPSG 364
+ +G M +L+VL L N F G++P + + +L IL L +N+L G++P
Sbjct: 326 AIPEFIGEM------PELEVLQLWENNFTGSIPQKLGE-NGRLVILDLSSNKLTGTLPPN 378
Query: 365 IGNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFL 424
+ + L +L T N GSIP +GK +L + G N +G IP L L L ++ L
Sbjct: 379 MCSGNRLMTLITLGNFLFGSIPDSLGKCESLTRIRMGENFLNGSIPKELFGLPKLSQVEL 438
Query: 425 GDNNLSGVIPSSLGNLE-RLAILEMFANELSGTIPGDIFNISSLSVSLDLAENHFVGSIP 483
DN L+G +P S G + L + + N+LSG++P I N+S + L L N F GSIP
Sbjct: 439 QDNYLTGELPISGGGVSGDLGQISLSNNQLSGSLPAAIGNLSGVQ-KLLLDGNKFSGSIP 497
Query: 484 PRIGNLKALRCFDVSNNDLSGEIPSELGLCSSLEEIYLAENFFNGFIPSFFRTSRGIRKV 543
P IG L+ L D S+N SG I E+ C L + L+ N +G IP+ + + +
Sbjct: 498 PEIGRLQQLSKLDFSHNLFSGRIAPEISRCKLLTFVDLSRNELSGDIPNELTGMKILNYL 557
Query: 544 DLSRNNFFGQIPIFLEAL-SLEYLNLSFNDFEGRLPTRGIFANASAISVGGCNRLCG 599
+LSRN+ G IP+ + ++ SL ++ S+N+ G +P+ G F+ + S G + LCG
Sbjct: 558 NLSRNHLVGSIPVTIASMQSLTSVDFSYNNLSGLVPSTGQFSYFNYTSFVGNSHLCG 614
|
Necessary for male gametophyte development, as well as ovule specification and function. Involved in cell-cell communication process required during early anther development, and regulating cell division and differentiation to organize cell layers. Required for the development of high-ordered vascular strands within the leaf and a correlated control of leaf shape, size and symmetry. May regulate the CLV1-dependent CLV3-mediated signaling in meristems maintenance. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q9LVP0|Y5639_ARATH Probable leucine-rich repeat receptor-like protein kinase At5g63930 OS=Arabidopsis thaliana GN=At5g63930 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 273 bits (697), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 190/531 (35%), Positives = 285/531 (53%), Gaps = 13/531 (2%)
Query: 61 LSGLLSPQIGNLSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPANLSYC 120
+SG L +IGNL L ++ +N I G++P G L+RL + N + G +P+ + C
Sbjct: 157 ISGSLPVEIGNLLSLSQLVTYSNNISGQLPRSIGNLKRLTSFRAGQNMISGSLPSEIGGC 216
Query: 121 SRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTGGIPPFLGNLTSLEVVSLAGNP 180
L +L L N+L G +P E L KL Q+ L N +G IP + N TSLE ++L N
Sbjct: 217 ESLVMLGLAQNQLSGELPKEIGMLKKLSQVILWENEFSGFIPREISNCTSLETLALYKNQ 276
Query: 181 FGGNIPDSLGQLKELKTLGIGGNNLSGSIPPSIYNLSFLVIFSVSENQMHGSLPPSLGLY 240
G IP LG L+ L+ L + N L+G+IP I NLS+ + SEN + G +P LG
Sbjct: 277 LVGPIPKELGDLQSLEFLYLYRNGLNGTIPREIGNLSYAIEIDFSENALTGEIPLELG-N 335
Query: 241 FPNLKLFQTNENFFSGSIPISLSNASKLEYVEIASNSFFGKLSVNFGGMKNLSYLILEYN 300
L+L EN +G+IP+ LS L ++++ N+ G + + F ++ L L L N
Sbjct: 336 IEGLELLYLFENQLTGTIPVELSTLKNLSKLDLSINALTGPIPLGFQYLRGLFMLQLFQN 395
Query: 301 NLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLSSQLQILVLGTNQLYGS 360
+L ++G+ S L VL + N G +P + L S + IL LGTN L G+
Sbjct: 396 SLSGTIPPKLGWY------SDLWVLDMSDNHLSGRIPSYLC-LHSNMIILNLGTNNLSGN 448
Query: 361 IPSGIGNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLY 420
IP+GI L L+ N G P + K +N+ ++ G N F G IP +GN S+L
Sbjct: 449 IPTGITTCKTLVQLRLARNNLVGRFPSNLCKQVNVTAIELGQNRFRGSIPREVGNCSALQ 508
Query: 421 EIFLGDNNLSGVIPSSLGNLERLAILEMFANELSGTIPGDIFNISSLSVSLDLAENHFVG 480
+ L DN +G +P +G L +L L + +N+L+G +P +IFN L LD+ N+F G
Sbjct: 509 RLQLADNGFTGELPREIGMLSQLGTLNISSNKLTGEVPSEIFNCKMLQ-RLDMCCNNFSG 567
Query: 481 SIPPRIGNLKALRCFDVSNNDLSGEIPSELGLCSSLEEIYLAENFFNGFIPSFFRTSRGI 540
++P +G+L L +SNN+LSG IP LG S L E+ + N FNG IP + G+
Sbjct: 568 TLPSEVGSLYQLELLKLSNNNLSGTIPVALGNLSRLTELQMGGNLFNGSIPRELGSLTGL 627
Query: 541 R-KVDLSRNNFFGQIPIFLEALS-LEYLNLSFNDFEGRLPTRGIFANASAI 589
+ ++LS N G+IP L L LE+L L+ N+ G +P+ FAN S++
Sbjct: 628 QIALNLSYNKLTGEIPPELSNLVMLEFLLLNNNNLSGEIPSS--FANLSSL 676
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 627 | ||||||
| 224115346 | 1017 | predicted protein [Populus trichocarpa] | 0.955 | 0.588 | 0.550 | 1e-168 | |
| 359482058 | 1040 | PREDICTED: probable LRR receptor-like se | 0.960 | 0.578 | 0.513 | 1e-158 | |
| 147853780 | 1904 | hypothetical protein VITISV_030954 [Viti | 0.960 | 0.316 | 0.512 | 1e-157 | |
| 224090977 | 1034 | predicted protein [Populus trichocarpa] | 0.958 | 0.581 | 0.509 | 1e-157 | |
| 255577438 | 1028 | receptor-kinase, putative [Ricinus commu | 0.980 | 0.598 | 0.483 | 1e-155 | |
| 224119022 | 1021 | predicted protein [Populus trichocarpa] | 0.977 | 0.600 | 0.463 | 1e-145 | |
| 356529793 | 922 | PREDICTED: probable LRR receptor-like se | 0.953 | 0.648 | 0.469 | 1e-145 | |
| 224097752 | 1025 | predicted protein [Populus trichocarpa] | 0.969 | 0.593 | 0.467 | 1e-143 | |
| 224141953 | 1026 | predicted protein [Populus trichocarpa] | 0.958 | 0.585 | 0.502 | 1e-143 | |
| 224119102 | 1007 | predicted protein [Populus trichocarpa] | 0.945 | 0.588 | 0.469 | 1e-143 |
| >gi|224115346|ref|XP_002317009.1| predicted protein [Populus trichocarpa] gi|222860074|gb|EEE97621.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 598 bits (1541), Expect = e-168, Method: Compositional matrix adjust.
Identities = 335/609 (55%), Positives = 426/609 (69%), Gaps = 10/609 (1%)
Query: 18 DLAALQAFKSMISHDPQGILNSWNDSRHFCEWEGITC----------DLRSKALSGLLSP 67
D AL FKS I HDPQ I SWNDS HFC+W+G+ C L S L G +SP
Sbjct: 39 DRLALLDFKSKIIHDPQNIFGSWNDSLHFCQWQGVRCGRRHERVTVLKLESSGLVGSISP 98
Query: 68 QIGNLSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLTVLV 127
+GNLSFL ++L NNT+QG+IP GRL RL+ L+L++NS VG+IP NLS+CS+L L
Sbjct: 99 ALGNLSFLWGLDLSNNTLQGKIPDGLGRLFRLQILVLNNNSFVGEIPGNLSHCSKLDYLG 158
Query: 128 LGNNKLVGSIPFEFVSLYKLKQLALPMNNLTGGIPPFLGNLTSLEVVSLAGNPFGGNIPD 187
L +N LVG IP E VSL KL++L + NNL+G IPPF+GNLTSL +S A N F G IPD
Sbjct: 159 LASNNLVGKIPAELVSLSKLEKLVIHKNNLSGAIPPFIGNLTSLNSISAAANNFQGRIPD 218
Query: 188 SLGQLKELKTLGIGGNNLSGSIPPSIYNLSFLVIFSVSENQMHGSLPPSLGLYFPNLKLF 247
+LGQLK L++LG+G N LSG+IP IYNLS L I S+SENQ+ G LP +G+ PNL+
Sbjct: 219 TLGQLKNLESLGLGTNFLSGTIPLPIYNLSTLSILSLSENQLQGYLPSDIGVSLPNLQYI 278
Query: 248 QTNENFFSGSIPISLSNASKLEYVEIASNSFFGKLSVNFGGMKNLSYLILEYNNLGSGES 307
Q N FSGSIP+S+SN+S L+ +E NSF GKLSVNFGG+K+L+ + L +N +GSGE
Sbjct: 279 QIRANQFSGSIPLSISNSSNLQVLEAGDNSFSGKLSVNFGGLKHLAVVSLSFNKMGSGEP 338
Query: 308 DEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLSSQLQILVLGTNQLYGSIPSGIGN 367
E+ F++SL NC+ L + + GN F G LP+S+ NLS+ L L LG NQL+G I SGIGN
Sbjct: 339 GELSFLDSLINCTSLYAIDIVGNHFEGMLPNSLGNLSTGLTFLGLGQNQLFGGIHSGIGN 398
Query: 368 LVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLGDN 427
L+NL +L E NQ +G IP ++GKL LQ N SG IPS++GNL+ L E L N
Sbjct: 399 LINLNTLGLEFNQLSGPIPLDIGKLRMLQRFSLSYNRLSGHIPSSIGNLTLLLEFDLQGN 458
Query: 428 NLSGVIPSSLGNLERLAILEMFANELSGTIPGDIFNISSLSVSLDLAENHFVGSIPPRIG 487
L G IPSS+GN ++L +L + N LSG P ++F ISSLSVSLDL++N+F GS+P IG
Sbjct: 459 QLQGTIPSSIGNCQKLLLLHLSRNNLSGNAPKELFAISSLSVSLDLSQNYFNGSLPSEIG 518
Query: 488 NLKALRCFDVSNNDLSGEIPSELGLCSSLEEIYLAENFFNGFIPSFFRTSRGIRKVDLSR 547
+LK+L +VS N+ SGEIPS L C+SLE +Y+ NFF G IPS F T RGI+K+DLS
Sbjct: 519 SLKSLAKLNVSYNEFSGEIPSTLASCTSLEYLYMQHNFFQGSIPSSFSTLRGIQKLDLSH 578
Query: 548 NNFFGQIPIFLEALSLEYLNLSFNDFEGRLPTRGIFANASAISVGGCNRLCGGIHELQLP 607
NN GQIP FL+ +L LNLSFNDFEG +PT+G F NA+AISV G +LCGGI EL+LP
Sbjct: 579 NNLSGQIPKFLDTFALLTLNLSFNDFEGEVPTKGAFGNATAISVDGNKKLCGGISELKLP 638
Query: 608 KCPEHESSR 616
KC +S +
Sbjct: 639 KCNFKKSKK 647
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359482058|ref|XP_002274540.2| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 564 bits (1453), Expect = e-158, Method: Compositional matrix adjust.
Identities = 317/617 (51%), Positives = 401/617 (64%), Gaps = 15/617 (2%)
Query: 16 EGDLAALQAFKSMISHDPQGILNSWNDSRHFCEWEGITC----------DLRSKALSGLL 65
E D AL A K+ I+ DP GI SWNDS HFC W G+TC +L S L G L
Sbjct: 38 ETDRLALLAIKAQITQDPLGITTSWNDSVHFCNWTGVTCGHRHQRVNTLNLNSLHLVGSL 97
Query: 66 SPQIGNLSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLTV 125
SP IGNL+FL +NL N G+IP E GRL RL L L++NS G+IPANLS CS L
Sbjct: 98 SPSIGNLTFLTGLNLELNNFHGQIPQELGRLSRLRALNLTNNSFSGEIPANLSRCSNLVY 157
Query: 126 LVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTGGIPPFLGNLTSLEVVSLAGNPFGGNI 185
LG N L+G IP S K+ ++ L NNLTG +P LGNLTS++ +S A N G+I
Sbjct: 158 FRLGFNNLIGRIPSWLGSYPKVVRMQLHYNNLTGPVPDSLGNLTSIKSLSFAVNHLEGSI 217
Query: 186 PDSLGQLKELKTLGIGGNNLSGSIPPSIYNLSFLVIFSVSENQMHGSLPPSLGLYFPNLK 245
P +LGQL+ L+ +G+G N SG IP S+YN+S L +FS+ N+++GSLP L PNL+
Sbjct: 218 PQALGQLQTLEFMGLGMNGFSGIIPSSVYNMSSLEVFSLPYNKLYGSLPWDLAFTLPNLQ 277
Query: 246 LFQTNENFFSGSIPISLSNASKLEYVEIASNSFFGKLSVNFGGMKNLSYLILEYNNLGSG 305
+ N F+GS+P SLSNAS L +I ++F GK+S++FGGM NL L L N LG G
Sbjct: 278 VLNIGNNDFTGSLPSSLSNASNLLEFDITMSNFTGKVSIDFGGMPNLWGLFLASNPLGKG 337
Query: 306 ESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLSSQLQILVLGTNQLYGSIPSGI 365
E+D++ F+NSL C L+VL L G+QF G LP+SIANLS+QL L L NQL G+IP GI
Sbjct: 338 EADDLSFLNSLMKCRALKVLDLSGSQFGGVLPNSIANLSTQLMKLKLDNNQLSGTIPPGI 397
Query: 366 GNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLG 425
GNLVNL L N FTGSIP +G L L +D N SG IPS+LGN++ LY + L
Sbjct: 398 GNLVNLTDLILANNDFTGSIPVLIGNLQMLGRIDLSRNQLSGHIPSSLGNITRLYSLHLQ 457
Query: 426 DNNLSGVIPSSLGNLERLAILEMFANELSGTIPGDIFNISSLSVSLDLAENHFVGSIPPR 485
+N+LSG IPSS GNL L L++ N L+GTIP + ++ SL++SL+LA N G +P
Sbjct: 458 NNHLSGKIPSSFGNLLYLQELDLSYNSLNGTIPEKVMDLVSLTISLNLARNQLTGLLPSE 517
Query: 486 IGNLKALRCFDVSNNDLSGEIPSELGLCSSLEEIYLAENFFNGFIPSFFRTSRGIRKVDL 545
+ LK L DVS N LSGEIP LG C +LE +++ NFF G IP F + RG+ +DL
Sbjct: 518 VRKLKNLGHLDVSENKLSGEIPDGLGSCLTLEHLHMEGNFFKGSIPPSFISLRGLLDLDL 577
Query: 546 SRNNFFGQIPIFLEALSLEYLNLSFNDFEGRLPTRGIFANASAISVGGCNRLCGGIHELQ 605
SRNN GQIP FL+ LSL LNLSFN+FEG+LPT+G+F NA++ SV G N+LCGGI EL
Sbjct: 578 SRNNLSGQIPEFLQQLSLSNLNLSFNNFEGQLPTKGVFNNATSTSVAGNNKLCGGIPELH 637
Query: 606 LPKCP-----EHESSRG 617
LP CP ES RG
Sbjct: 638 LPACPVTKPKTGESKRG 654
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147853780|emb|CAN83822.1| hypothetical protein VITISV_030954 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 562 bits (1448), Expect = e-157, Method: Compositional matrix adjust.
Identities = 316/617 (51%), Positives = 400/617 (64%), Gaps = 15/617 (2%)
Query: 16 EGDLAALQAFKSMISHDPQGILNSWNDSRHFCEWEGITC----------DLRSKALSGLL 65
E D AL A K+ I+ DP GI SWNDS HFC W G+TC +L S L G L
Sbjct: 69 ETDRLALLAIKAQITQDPLGITTSWNDSVHFCNWTGVTCGHRHQRVNTLNLSSLHLVGSL 128
Query: 66 SPQIGNLSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLTV 125
SP IGNL+FL +NL N G+IP E GRL RL L L++NS G+IPANLS CS L
Sbjct: 129 SPSIGNLTFLTGLNLELNNFHGQIPQELGRLSRLRALNLTNNSFSGEIPANLSRCSNLVY 188
Query: 126 LVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTGGIPPFLGNLTSLEVVSLAGNPFGGNI 185
LG N L+G IP S K+ ++ L NNLTG +P LGNLTS++ +S A N G+I
Sbjct: 189 FRLGFNNLIGRIPSWLGSYPKVVRMQLHYNNLTGPVPDSLGNLTSIKSLSFAVNHLEGSI 248
Query: 186 PDSLGQLKELKTLGIGGNNLSGSIPPSIYNLSFLVIFSVSENQMHGSLPPSLGLYFPNLK 245
P +LGQL+ L+ +G+G N SG IP S+YN+S L +FS+ N+++GSLP L PNL+
Sbjct: 249 PQALGQLQTLEFMGLGMNGFSGIIPSSVYNMSSLEVFSLPYNKLYGSLPWDLAFTLPNLQ 308
Query: 246 LFQTNENFFSGSIPISLSNASKLEYVEIASNSFFGKLSVNFGGMKNLSYLILEYNNLGSG 305
+ N F+G +P SLSNAS L +I ++F GK+S++FGGM NL L L N LG G
Sbjct: 309 VLNIGNNDFTGPLPSSLSNASNLLEFDITMSNFTGKVSIDFGGMPNLWGLFLASNPLGKG 368
Query: 306 ESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLSSQLQILVLGTNQLYGSIPSGI 365
E+D++ F+NSL C L+VL L G+QF G LP+SIANLS+QL L L NQL G+IP GI
Sbjct: 369 EADDLSFLNSLMKCRALKVLDLSGSQFGGVLPNSIANLSTQLMKLKLDNNQLSGTIPPGI 428
Query: 366 GNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLG 425
GNLVNL L N FTGSIP +G L L +D N SG IPS+LGN++ LY + L
Sbjct: 429 GNLVNLTDLILANNDFTGSIPVLIGNLQMLGRIDLSRNQLSGHIPSSLGNITRLYSLHLQ 488
Query: 426 DNNLSGVIPSSLGNLERLAILEMFANELSGTIPGDIFNISSLSVSLDLAENHFVGSIPPR 485
+N+LSG IPSS GNL L L++ N L+GTIP + ++ SL++SL+LA N G +P
Sbjct: 489 NNHLSGKIPSSFGNLLYLQELDLSYNSLNGTIPEKVMDLVSLTISLNLARNQLTGLLPSE 548
Query: 486 IGNLKALRCFDVSNNDLSGEIPSELGLCSSLEEIYLAENFFNGFIPSFFRTSRGIRKVDL 545
+ LK L DVS N LSGEIP LG C +LE +++ NFF G IP F + RG+ +DL
Sbjct: 549 VRKLKNLGHLDVSENKLSGEIPDGLGSCLTLEHLHMEGNFFKGSIPPSFISLRGLLDLDL 608
Query: 546 SRNNFFGQIPIFLEALSLEYLNLSFNDFEGRLPTRGIFANASAISVGGCNRLCGGIHELQ 605
SRNN GQIP FL+ LSL LNLSFN+FEG+LPT+G+F NA++ SV G N+LCGGI EL
Sbjct: 609 SRNNLSGQIPEFLQQLSLSNLNLSFNNFEGQLPTKGVFNNATSTSVAGNNKLCGGIPELH 668
Query: 606 LPKCP-----EHESSRG 617
LP CP ES RG
Sbjct: 669 LPACPVTKPKTGESKRG 685
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224090977|ref|XP_002309132.1| predicted protein [Populus trichocarpa] gi|222855108|gb|EEE92655.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 561 bits (1447), Expect = e-157, Method: Compositional matrix adjust.
Identities = 312/612 (50%), Positives = 410/612 (66%), Gaps = 11/612 (1%)
Query: 16 EGDLAALQAFKSMISHDPQGILNSWNDSRHFCEWEGITC----------DLRSKALSGLL 65
E D AL A K+ I DP G+++SWNDS HFC W GI C +L L G L
Sbjct: 36 ETDHLALLAIKAQIKLDPLGLMSSWNDSLHFCNWGGIICGNLHQRVITLNLSHYGLVGSL 95
Query: 66 SPQIGNLSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLTV 125
SPQIGN+SFLR I+L N GEIP E GRL RL+ + S+NS G+IPANLS CS L +
Sbjct: 96 SPQIGNMSFLRGISLEQNYFHGEIPQEIGRLDRLKYINFSNNSFSGEIPANLSGCSSLLM 155
Query: 126 LVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTGGIPPFLGNLTSLEVVSLAGNPFGGNI 185
L LG NKL G IP++ SL KL+++ L NNL G +P LGN++S+ +SL+ N F G+I
Sbjct: 156 LRLGFNKLTGQIPYQLGSLQKLERVQLHYNNLNGSVPDSLGNISSVRSLSLSVNNFEGSI 215
Query: 186 PDSLGQLKELKTLGIGGNNLSGSIPPSIYNLSFLVIFSVSENQMHGSLPPSLGLYFPNLK 245
PD+LG+LK L LG+G NNLSG IPP+I+NLS L++F++ NQ+HG+LP LGL PNL+
Sbjct: 216 PDALGRLKTLNFLGLGLNNLSGMIPPTIFNLSSLIVFTLPYNQLHGTLPSDLGLTLPNLQ 275
Query: 246 LFQTNENFFSGSIPISLSNASKLEYVEIASNSFFGKLSVNFGGMKNLSYLILEYNNLGSG 305
+ NFFSG +P+S+SNAS L ++I + S F K++++FGG+ NL L L N LG G
Sbjct: 276 VLNIGHNFFSGPLPVSISNASNLLELDIDT-SNFTKVTIDFGGLPNLWSLALSSNPLGKG 334
Query: 306 ESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLSSQLQILVLGTNQLYGSIPSGI 365
E+D++ F++SL C L++L L + F G +P SI NLS+QL +L L NQL GSIP+ I
Sbjct: 335 EADDLSFIDSLTKCRNLRLLDLSNSHFGGVIPDSIGNLSTQLFLLKLRGNQLSGSIPTVI 394
Query: 366 GNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLG 425
NL+NL L E+N +GSIP +G L LQ LD N SG IPS+LGN++ L+E L
Sbjct: 395 ENLLNLAELTVEKNYLSGSIPSVLGNLKMLQRLDLSENKLSGLIPSSLGNITQLFEFHLQ 454
Query: 426 DNNLSGVIPSSLGNLERLAILEMFANELSGTIPGDIFNISSLSVSLDLAENHFVGSIPPR 485
N + G IPSS GNL+ L L++ N LSGTIP ++ +SSL++SL+LA+N G +PP
Sbjct: 455 KNQIMGSIPSSFGNLKYLQNLDLSQNLLSGTIPKEVMGLSSLTISLNLAQNQLTGPLPPE 514
Query: 486 IGNLKALRCFDVSNNDLSGEIPSELGLCSSLEEIYLAENFFNGFIPSFFRTSRGIRKVDL 545
NL L DVS N L G+IPS LG C +LE++++ NFF G IP F + RG+R +DL
Sbjct: 515 AQNLMNLGYLDVSENKLYGQIPSSLGSCVTLEKLHMQGNFFEGAIPPSFSSLRGLRDMDL 574
Query: 546 SRNNFFGQIPIFLEALSLEYLNLSFNDFEGRLPTRGIFANASAISVGGCNRLCGGIHELQ 605
SRNN GQIP FL+ L+L LNLSFN FEG +P G F NA+AIS+ G RLCGGI +L+
Sbjct: 575 SRNNLSGQIPQFLKRLALISLNLSFNHFEGEVPREGAFLNATAISLSGNKRLCGGIPQLK 634
Query: 606 LPKCPEHESSRG 617
LP+C + S G
Sbjct: 635 LPRCVVNRSKNG 646
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255577438|ref|XP_002529598.1| receptor-kinase, putative [Ricinus communis] gi|223530931|gb|EEF32790.1| receptor-kinase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 555 bits (1430), Expect = e-155, Method: Compositional matrix adjust.
Identities = 306/633 (48%), Positives = 410/633 (64%), Gaps = 18/633 (2%)
Query: 1 MFLFFITLLQVAAFE------EGDLAALQAFKSMISHDPQGILNSWNDSRHFCEWEGITC 54
+++ F+ ++Q++ E D +L AFK+ I+ DP IL+SWN+S HFC+W GITC
Sbjct: 12 LWVLFLKMIQLSCSSLSGRGNETDRLSLLAFKAHITDDPLHILSSWNESLHFCKWSGITC 71
Query: 55 ----------DLRSKALSGLLSPQIGNLSFLREINLMNNTIQGEIPLEFGRLRRLETLLL 104
DL S LSG L+ IGNLSFLR +NL NN++ IP E GRL RL TL+L
Sbjct: 72 GSRHQRVIEIDLESSRLSGSLTAFIGNLSFLRVLNLQNNSLSHYIPQEIGRLFRLRTLIL 131
Query: 105 SDNSLVGKIPANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTGGIPPF 164
NS G+IP N+SYCS L L LG N L G +P E SL KL+ +N LTG I P
Sbjct: 132 RRNSFSGEIPVNISYCSNLLTLRLGRNNLTGKLPAELKSLSKLQMFEFEINYLTGEISPS 191
Query: 165 LGNLTSLEVVSLAGNPFGGNIPDSLGQLKELKTLGIGGNNLSGSIPPSIYNLSFLVIFSV 224
NL+SLE++ N F G IP+S+GQLK L+T +GG+N SG IPPSI+NLS L I SV
Sbjct: 192 FSNLSSLEIIYGTRNNFHGEIPNSIGQLKSLQTFSLGGSNFSGVIPPSIFNLSSLTILSV 251
Query: 225 SENQMHGSLPPSLGLYFPNLKLFQTNENFFSGSIPISLSNASKLEYVEIASNSFFGKLSV 284
NQ+HG+LPP LG P L++ + N FSGSIP ++SNAS L ++++ N+F GK+
Sbjct: 252 PINQLHGNLPPDLGQSLPKLEVLRLYANKFSGSIPPTISNASNLVALDVSQNNFTGKVP- 310
Query: 285 NFGGMKNLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLS 344
+ + NLSY+ + NNLG+GE D++ F+ +LAN + L++L++ N G LP ++N S
Sbjct: 311 SLARLHNLSYIGIHKNNLGNGEDDDLSFLYTLANNTNLEILAITENNLGGVLPEMLSNFS 370
Query: 345 SQLQILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNH 404
++L + G N++ G IPS I NL+ L +L E N+ TGSIP +GKL NL L N+
Sbjct: 371 TKLVHMAFGRNKIRGRIPSEIDNLIRLEALGFERNELTGSIPSSLGKLKNLIKLYLNDNN 430
Query: 405 FSGEIPSTLGNLSSLYEIFLGDNNLSGVIPSSLGNLERLAILEMFANELSGTIPGDIFNI 464
SG IPS+LGN++SL I L NNL G IPSSLGN +++ ++++ N LSGTIP ++ +I
Sbjct: 431 ISGSIPSSLGNITSLSTISLKVNNLEGSIPSSLGNCQQMLLMDLSRNNLSGTIPKELISI 490
Query: 465 SSLSVSLDLAENHFVGSIPPRIGNLKALRCFDVSNNDLSGEIPSELGLCSSLEEIYLAEN 524
SLS+SLDL+EN F GS+P +G L L DVS N LSGEIP LG C+ LE +YL N
Sbjct: 491 PSLSISLDLSENQFTGSLPMEVGGLVNLGYLDVSKNKLSGEIPKSLGSCTRLETLYLQGN 550
Query: 525 FFNGFIPSFFRTSRGIRKVDLSRNNFFGQIP-IFLEALSLEYLNLSFNDFEGRLPTRGIF 583
F G IP + RGI ++LS NN GQIP F E SLE L+LS+NDFEG +P G+F
Sbjct: 551 AFQGTIPVSLSSLRGINDLNLSHNNLTGQIPNFFAEFKSLEKLDLSYNDFEGEVPAEGVF 610
Query: 584 ANASAISVGGCNRLCGGIHELQLPKCPEHESSR 616
NASA S+ G LCGGI E+ LP+C ++S +
Sbjct: 611 KNASAFSISGNKNLCGGIPEINLPRCTLNKSMK 643
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224119022|ref|XP_002331306.1| predicted protein [Populus trichocarpa] gi|222873889|gb|EEF11020.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 521 bits (1342), Expect = e-145, Method: Compositional matrix adjust.
Identities = 292/630 (46%), Positives = 407/630 (64%), Gaps = 17/630 (2%)
Query: 2 FLFFITLLQVAAFE---EGDLAALQAFKSMISHDPQGILNSWNDSRHFCEWEGITC---- 54
F+F ++L+ V + E DL AL FK+ I DP GI++SWN + HFC+W G++C
Sbjct: 11 FVFLLSLISVTCSDYTNETDLLALIQFKNKIVDDPLGIMSSWNSTIHFCQWHGVSCGRRH 70
Query: 55 ------DLRSKALSGLLSPQIGNLSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNS 108
L+S LSG +SP IGNLSFLRE++L NN+ EIP + GRLR L+ L +NS
Sbjct: 71 QRVRVLALQSLKLSGTISPHIGNLSFLRELHLQNNSFFHEIPPQVGRLRSLQIFSLHNNS 130
Query: 109 LVGKIPANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTGGIPPFLGNL 168
+ G+IP ++S CS L + + N L G IP E SL KLK L L +N LTG IPP LGNL
Sbjct: 131 ISGQIPPSISDCSNLISIKIEFNNLTGEIPMELGSLLKLKNLTLEVNGLTGTIPPSLGNL 190
Query: 169 TSLEVVSLAGNP-FGGNIPDSLGQLKELKTLGIGGNNLSGSIPPSIYNLSFLVIFSVSEN 227
+SLE++ L N GN+P +LG+LK L+ L + N LSG IPPSI+NLS L + N
Sbjct: 191 SSLEILRLEKNKILFGNVPSTLGKLKNLRILNLMDNRLSGVIPPSIFNLSSLTALDIGFN 250
Query: 228 QMHGSLPPSLGLYFPNLKLFQTNENFFSGSIPISLSNASKLEYVEIASNSFFGKLSVNFG 287
HG+LP +G+ PNL+ F N F+GSIP+S+SNAS +E ++++ N+ G++
Sbjct: 251 LFHGNLPSDIGISLPNLEFFSIASNQFTGSIPVSISNASNIELLQVSLNNLTGEVPT-LE 309
Query: 288 GMKNLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLSSQL 347
+ L++ L N+LGSG+++++ F++SL N + L+ LS+ N F G LP I+NLS+ L
Sbjct: 310 KLHRLNFFTLFSNHLGSGQANDLSFLSSLTNATTLEYLSIKRNNFGGELPKQISNLSTML 369
Query: 348 QILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSG 407
++ L N + GSIP+GI LVNL N+ +G IP +G+L NL+GL N+ SG
Sbjct: 370 GVISLPENNILGSIPAGIEKLVNLKVFDVGNNKISGIIPSSIGELQNLEGLVLDYNNLSG 429
Query: 408 EIPSTLGNLSSLYEIFLGDNNLSGVIPSSLGNLERLAILEMFANELSGTIPGDIFNISSL 467
IPS++GNL+ L ++LGDN+L G IPSSLGN ++L +L + N LSG IP +F I SL
Sbjct: 430 RIPSSVGNLTKLMALYLGDNSLEGSIPSSLGNCKKLLVLTLCGNNLSGDIPPGLFGIFSL 489
Query: 468 SVSLDLAENHFVGSIPPRIGNLKALRCFDVSNNDLSGEIPSELGLCSSLEEIYLAENFFN 527
+ + ++NHF GS+P IG L L DVS N LSGEIPS LG C SLE++Y+ NFF+
Sbjct: 490 -LYICFSKNHFSGSLPIEIGKLINLEFLDVSGNMLSGEIPSSLGGCISLEDLYMNSNFFH 548
Query: 528 GFIPSFFRTSRGIRKVDLSRNNFFGQIPIFLEAL-SLEYLNLSFNDFEGRLPTRGIFANA 586
G IPS + RG+ + + S NN G+IP F + SLE L+LS+N+FEG +P GIF N+
Sbjct: 549 GSIPSALSSLRGVLQFNFSHNNLSGKIPEFFQGFNSLEMLDLSYNNFEGMIPDEGIFKNS 608
Query: 587 SAISVGGCNRLCGGIHELQLPKCPEHESSR 616
+A+SV G ++LCGG EL LP+C H+ R
Sbjct: 609 TAVSVIGNSQLCGGNTELGLPRCKVHQPKR 638
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356529793|ref|XP_003533472.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 521 bits (1341), Expect = e-145, Method: Compositional matrix adjust.
Identities = 287/611 (46%), Positives = 392/611 (64%), Gaps = 13/611 (2%)
Query: 11 VAAFEEGDLAALQAFKSMISHDPQGILNSWNDSRHFCEWEGITCDLRSK----------A 60
+A+ E D AL FK IS+DP GIL SWN S HFC W GITC+L +
Sbjct: 4 IASGNETDHLALFNFKKSISNDPYGILFSWNTSTHFCNWHGITCNLMLQRVTELNLDGYQ 63
Query: 61 LSGLLSPQIGNLSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPANLSYC 120
L G +SP +GNLS++R ++L NN G+IP E GRL +L+ L + +NSL G+IP NL+ C
Sbjct: 64 LKGFISPHVGNLSYMRNLSLSNNNFHGKIPQELGRLSQLQHLSIENNSLGGEIPTNLTGC 123
Query: 121 SRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTGGIPPFLGNLTSLEVVSLAGNP 180
+ L L N L+G IP E VSL KL+ L++ N LTG IP F+GNL+SL V+ + N
Sbjct: 124 THLNSLFSYGNNLIGKIPIEIVSLQKLQYLSISQNKLTGRIPSFIGNLSSLIVLGVGYNN 183
Query: 181 FGGNIPDSLGQLKELKTLGIGGNNLSGSIPPSIYNLSFLVIFSVSENQMHGSLPPSLGLY 240
G IP + +LK LK L G N L+G+ P +YN+S L + + +ENQ++G+LPP++
Sbjct: 184 LEGEIPQEICRLKSLKWLSTGINKLTGTFPSCLYNMSSLTVLAATENQLNGTLPPNMFHT 243
Query: 241 FPNLKLFQTNENFFSGSIPISLSNASKLEYVEIASNSFFGKLSVNFGGMKNLSYLILEYN 300
PNL++F+ N SG IP S++N S L +EI + F G++ + G ++NL L L N
Sbjct: 244 LPNLRVFEIGGNKISGPIPPSITNTSILSILEIGGH-FRGQVP-SLGKLQNLQILNLSPN 301
Query: 301 NLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLSSQLQILVLGTNQLYGS 360
NLG+ ++++ F+NSL NCSKLQVLS+ N F G LP+S+ NLS+QL L LG NQ+ G
Sbjct: 302 NLGNNSTNDLEFLNSLTNCSKLQVLSIAHNNFGGQLPNSLGNLSTQLSELALGGNQISGK 361
Query: 361 IPSGIGNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLY 420
IP+ +GNL+NL L E++ F G IP GK LQ L+ N SG++P+ LGNLS L+
Sbjct: 362 IPTELGNLINLVLLGLEQSHFQGIIPSAFGKFQKLQLLELSANKLSGDLPAFLGNLSQLF 421
Query: 421 EIFLGDNNLSGVIPSSLGNLERLAILEMFANELSGTIPGDIFNISSLSVSLDLAENHFVG 480
+ LG+N L G IPSS+GN + L L + N L GTIP +IFN+SSL+ LDL++N G
Sbjct: 422 HLGLGENKLEGNIPSSIGNCQMLQYLYLRQNNLRGTIPLEIFNLSSLTQVLDLSQNSLSG 481
Query: 481 SIPPRIGNLKALRCFDVSNNDLSGEIPSELGLCSSLEEIYLAENFFNGFIPSFFRTSRGI 540
SIP + NLK + DVS N LSGEIP + C+ LE +YL N G IPS + + +
Sbjct: 482 SIPKEVNNLKNINLLDVSENHLSGEIPGTIRECTMLEYLYLQGNSLQGIIPSSLASLKSL 541
Query: 541 RKVDLSRNNFFGQIPIFLEALS-LEYLNLSFNDFEGRLPTRGIFANASAISVGGCNRLCG 599
+++DLSRN G IP L+ +S LEYLN+SFN +G +PT G+F NAS + V G ++LCG
Sbjct: 542 QRLDLSRNRLSGSIPNVLQNMSFLEYLNVSFNMLDGEVPTEGVFQNASGLVVTGNSKLCG 601
Query: 600 GIHELQLPKCP 610
GI +L LP CP
Sbjct: 602 GISKLHLPPCP 612
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224097752|ref|XP_002311067.1| predicted protein [Populus trichocarpa] gi|222850887|gb|EEE88434.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 516 bits (1330), Expect = e-143, Method: Compositional matrix adjust.
Identities = 293/627 (46%), Positives = 394/627 (62%), Gaps = 19/627 (3%)
Query: 1 MFLFFITLLQV-------AAFEEGDLAALQAFKSMISHDPQGILNSWNDSRHFCEWEGIT 53
++L F+ ++Q+ E D +L A KS I++DP G+L+SWN+S HFC+W G+
Sbjct: 11 LWLLFLQIIQLPIPFSLPTGGNETDRLSLLALKSQITNDPFGMLSSWNESLHFCDWSGVI 70
Query: 54 C----------DLRSKALSGLLSPQIGNLSFLREINLMNNTIQGEIPLEFGRLRRLETLL 103
C DL S L G LSP IGNLSFLR + L NN IP E G L RL L
Sbjct: 71 CGKRHRRVVEIDLHSAQLVGSLSPHIGNLSFLRILKLENNRFSHNIPQELGHLFRLRMLS 130
Query: 104 LSDNSLVGKIPANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTGGIPP 163
L +N+ GKIP N+S+CS L +L L N L G +P E SL KL+ N L GGIP
Sbjct: 131 LENNTFDGKIPVNISHCSNLLILSLSGNNLTGKLPIELGSLSKLQVFFFQFNYLVGGIPS 190
Query: 164 FLGNLTSLEVVSLAGNPFGGNIPDSLGQLKELKTLGIGGNNLSGSIPPSIYNLSFLVIFS 223
GNL+++ + AGN G IP+S+GQLK LK+ G NN++G IPPSIYNLS L+ F+
Sbjct: 191 SFGNLSAIIQIFGAGNYLQGGIPNSIGQLKSLKSFSFGRNNMTGMIPPSIYNLSSLMRFA 250
Query: 224 VSENQMHGSLPPSLGLYFPNLKLFQTNENFFSGSIPISLSNASKLEYVEIASNSFFGKLS 283
V NQ+HG+LPP LGL PNL++ + N FSGSIP + SNAS + +E+++N+ G++
Sbjct: 251 VPVNQLHGNLPPDLGLTLPNLEILLMSFNRFSGSIPPTFSNASTIAVIELSNNNLTGRVP 310
Query: 284 VNFGGMKNLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIANL 343
+ + L +LI++ N LG+G D++ F+ LAN + L+ LS+ N F G LP I+N
Sbjct: 311 -DLSSLSKLRWLIVDVNYLGNGNDDDLSFLPPLANKTSLEELSINDNNFGGLLPKIISNF 369
Query: 344 SSQLQILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGN 403
S L+ + G NQ+ GSIPSGIGNL+ L +L E NQ TG IP +GKL NL L GGN
Sbjct: 370 SENLKRMTFGRNQIRGSIPSGIGNLIGLDTLGLEMNQLTGVIPNSIGKLQNLGVLALGGN 429
Query: 404 HFSGEIPSTLGNLSSLYEIFLGDNNLSGVIPSSLGNLERLAILEMFANELSGTIPGDIFN 463
SG IPS++GN++SL E++L NNL G IPSSLGN + L IL + N LSG+IP ++ +
Sbjct: 430 KISGNIPSSMGNITSLLEVYLSANNLQGRIPSSLGNCQNLLILHLDQNNLSGSIPKEVIS 489
Query: 464 ISSLSVSLDLAENHFVGSIPPRIGNLKALRCFDVSNNDLSGEIPSELGLCSSLEEIYLAE 523
I S S L L+EN GS+P +G L L F++S+N LSGEIP LG C SLE +Y+
Sbjct: 490 IPSSSRILVLSENQLTGSLPLEVGKLANLGYFNLSHNRLSGEIPRTLGSCVSLEFLYMEG 549
Query: 524 NFFNGFIPSFFRTSRGIRKVDLSRNNFFGQIPIFLEALS-LEYLNLSFNDFEGRLPTRGI 582
N F G IP + R ++ ++LS NN G+IP FL L L L+LSFN+ EG +P +GI
Sbjct: 550 NLFQGPIPESLSSLRALQILNLSHNNLSGEIPKFLAELKLLTSLDLSFNNLEGEVPVQGI 609
Query: 583 FANASAISVGGCNRLCGGIHELQLPKC 609
FA AS S+ G +LCGG+ +L L +C
Sbjct: 610 FARASGFSMLGNKKLCGGMPQLNLSRC 636
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224141953|ref|XP_002324325.1| predicted protein [Populus trichocarpa] gi|222865759|gb|EEF02890.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 514 bits (1324), Expect = e-143, Method: Compositional matrix adjust.
Identities = 307/611 (50%), Positives = 387/611 (63%), Gaps = 10/611 (1%)
Query: 16 EGDLAALQAFKSMISHDPQGILNSWNDSRHFCEWEGITCDLR----------SKALSGLL 65
E D AL AFK+ I L+SWNDS FC W GITC R + L+G L
Sbjct: 31 ETDYEALLAFKAKIQDPHSNTLSSWNDSLDFCNWPGITCGRRHGRVRIINLVDQKLAGTL 90
Query: 66 SPQIGNLSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLTV 125
SP +GN+SFLREI L NNTI GEIP E GRL RL L+L++NS+ GKIPANLS CS L
Sbjct: 91 SPYVGNISFLREIRLANNTIHGEIPPEVGRLLRLRVLMLTNNSIEGKIPANLSGCSSLAE 150
Query: 126 LVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTGGIPPFLGNLTSLEVVSLAGNPFGGNI 185
L + NKL G IP E L KL L+ NNL G IP +GNLTSLE +SL N G I
Sbjct: 151 LYIDRNKLGGEIPTELGFLSKLTILSFRQNNLLGKIPHSIGNLTSLESLSLKRNVLEGTI 210
Query: 186 PDSLGQLKELKTLGIGGNNLSGSIPPSIYNLSFLVIFSVSENQMHGSLPPSLGLYFPNLK 245
PDSLG+LK L +L +G N LSG IPPS+YNLS + F + N GSLP +LGL FP+L+
Sbjct: 211 PDSLGRLKRLTSLLLGENKLSGFIPPSLYNLSLITTFYLGGNGFRGSLPSNLGLSFPHLQ 270
Query: 246 LFQTNENFFSGSIPISLSNASKLEYVEIASNSFFGKLSVNFGGMKNLSYLILEYNNLGSG 305
+N FSG IP SL+NAS+L+ V NS GK+ FG + +LS L NNLG+G
Sbjct: 271 WLALWQNQFSGPIPGSLTNASELQIVSFTYNSLTGKIPDIFGKLHHLSGLHFGSNNLGTG 330
Query: 306 ESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLSSQLQILVLGTNQLYGSIPSGI 365
DEM F+ SL NCS L+V+S+ N+ G+LP ++ NLS+ + L N + G IPSGI
Sbjct: 331 GDDEMAFLASLTNCSMLKVVSINNNRLEGSLPITVGNLSTYMVYFGLSGNHIVGRIPSGI 390
Query: 366 GNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLG 425
GNLVNL L + N FTG IP G L L+ N SG+IPS+LGNLS L ++L
Sbjct: 391 GNLVNLTFLYMDRNHFTGEIPTSFGNLRKLEQFSLFSNRLSGKIPSSLGNLSLLSVLYLD 450
Query: 426 DNNLSGVIPSSLGNLERLAILEMFANELSGTIPGDIFNISSLSVSLDLAENHFVGSIPPR 485
DN L IP+SLG + L L + L+G+IP +F SS+ SL+L+ N F GS+P
Sbjct: 451 DNKLKDTIPASLGGCKNLVSLGLSRKNLNGSIPEQLFGTSSVLFSLNLSHNQFTGSLPST 510
Query: 486 IGNLKALRCFDVSNNDLSGEIPSELGLCSSLEEIYLAENFFNGFIPSFFRTSRGIRKVDL 545
IG+LK L DVS N LSGEIP+ G C+SLE +++ +NFF G IPS F + RGI+ +DL
Sbjct: 511 IGSLKGLSELDVSWNMLSGEIPTSFGGCTSLEVLHMEDNFFQGSIPSSFSSLRGIQFLDL 570
Query: 546 SRNNFFGQIPIFLEALSLEYLNLSFNDFEGRLPTRGIFANASAISVGGCNRLCGGIHELQ 605
S NN GQ+P FL + LNLS+N+FEG +P +G+F N SA+SV G ++LCGGI EL
Sbjct: 571 SCNNLSGQLPNFLVTIPFISLNLSYNNFEGEVPRKGVFTNESAVSVVGNDKLCGGILELH 630
Query: 606 LPKCPEHESSR 616
LP+CP E +
Sbjct: 631 LPECPNKEPKK 641
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224119102|ref|XP_002331325.1| predicted protein [Populus trichocarpa] gi|222873908|gb|EEF11039.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 513 bits (1322), Expect = e-143, Method: Compositional matrix adjust.
Identities = 284/605 (46%), Positives = 390/605 (64%), Gaps = 12/605 (1%)
Query: 16 EGDLAALQAFKSMISHDPQGILNSWNDSRHFCEWEGITC----------DLRSKALSGLL 65
E D AL FKS I+HDP GI+ WN S HFC W G+TC DL+S LSG +
Sbjct: 33 ETDRLALLDFKSKITHDPLGIMRLWNSSIHFCHWFGVTCSQKHQRVAVLDLQSLKLSGSV 92
Query: 66 SPQIGNLSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLTV 125
SP IGNLSFLR + L +N+ EIP + G L RL+ L L +NS G+IPA++S L
Sbjct: 93 SPYIGNLSFLRNLYLQHNSFSHEIPAQIGHLHRLQILALHNNSFTGEIPASMSSSYNLVS 152
Query: 126 LVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTGGIPPFLGNLTSLEVVSLAGNPFGGNI 185
L+L NNKL G IP EF S KL L + NNL G IPP LGN++SL+ + L N GN+
Sbjct: 153 LILDNNKLTGEIPKEFGSFLKLTDLYIDDNNLVGTIPPSLGNISSLQELWLDDNNLFGNL 212
Query: 186 PDSLGQLKELKTLGIGGNNLSGSIPPSIYNLSFLVIFSVSENQMHGSLPPSLGLYFPNLK 245
P +L +L L+ L + N SG+IPPS+ NLS L F V N G+LPP LG+ PNL+
Sbjct: 213 PATLSKLVNLRVLSLFNNRFSGTIPPSMLNLSSLRTFQVGLNHFQGNLPPDLGISLPNLE 272
Query: 246 LFQTNENFFSGSIPISLSNASKLEYVEIASNSFFGKLSVNFGGMKNLSYLILEYNNLGSG 305
F N F+GS+P+S+SN S LE +E+ N GK+ + ++ L + + NNLGSG
Sbjct: 273 FFSIYSNQFTGSVPVSISNLSNLEMLELNLNKLRGKMP-SLEKLQRLLSITIASNNLGSG 331
Query: 306 ESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLSSQLQILVLGTNQLYGSIPSGI 365
E++++ F++SL N + L+ L + N F+G LP I+NLS+ L+I+ L +N L+GSIP GI
Sbjct: 332 EANDLSFLSSLTNATNLEELIITQNNFQGQLPPQISNLSTTLEIMGLDSNLLFGSIPDGI 391
Query: 366 GNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLG 425
NL++L + + N +G IP +GKL NL+ L N+FSG+IPS+LGNL++L ++L
Sbjct: 392 ENLISLNDFEVQNNHLSGIIPSTIGKLQNLEILGLALNNFSGDIPSSLGNLTNLIGLYLN 451
Query: 426 DNNLSGVIPSSLGNLERLAILEMFANELSGTIPGDIFNISSLSVSLDLAENHFVGSIPPR 485
D N+ G IPSSL N +L L++ N ++G+IP IF +SSLS++LDL+ NH GS+P
Sbjct: 452 DINVQGSIPSSLANCNKLLELDLSGNYITGSIPPGIFGLSSLSINLDLSRNHLSGSLPKE 511
Query: 486 IGNLKALRCFDVSNNDLSGEIPSELGLCSSLEEIYLAENFFNGFIPSFFRTSRGIRKVDL 545
+GNL+ L F +S N +SG+IPS L C SL+ +YL NFF G +PS T RGI++ +
Sbjct: 512 VGNLENLEIFAISGNMISGKIPSSLAQCISLQFLYLDANFFEGSVPSSLSTLRGIQEFNF 571
Query: 546 SRNNFFGQIPIFLEAL-SLEYLNLSFNDFEGRLPTRGIFANASAISVGGCNRLCGGIHEL 604
S NN G+I F + SLE L+LS+N+FEG +P RGIF NA+A SV G ++LCGG +
Sbjct: 572 SHNNLSGKIHEFFQDFRSLEILDLSYNNFEGMVPFRGIFKNATATSVIGNSKLCGGTPDF 631
Query: 605 QLPKC 609
+LP C
Sbjct: 632 ELPPC 636
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 627 | ||||||
| TAIR|locus:2079142 | 1010 | AT3G47570 [Arabidopsis thalian | 0.958 | 0.595 | 0.435 | 5.5e-125 | |
| TAIR|locus:2075631 | 1009 | AT3G47090 [Arabidopsis thalian | 0.968 | 0.601 | 0.436 | 4.9e-124 | |
| TAIR|locus:2149922 | 1031 | EFR "EF-TU receptor" [Arabidop | 0.976 | 0.593 | 0.429 | 1e-123 | |
| UNIPROTKB|Q40640 | 1025 | Xa21 "Receptor kinase-like pro | 0.942 | 0.576 | 0.452 | 1.3e-123 | |
| TAIR|locus:2075661 | 1025 | AT3G47110 [Arabidopsis thalian | 0.945 | 0.578 | 0.450 | 1.7e-123 | |
| TAIR|locus:2079157 | 1011 | AT3G47580 [Arabidopsis thalian | 0.963 | 0.597 | 0.425 | 3e-117 | |
| UNIPROTKB|O24435 | 813 | O24435 "Receptor kinase-like p | 0.925 | 0.713 | 0.427 | 6.1e-110 | |
| TAIR|locus:2170483 | 1173 | FLS2 "FLAGELLIN-SENSITIVE 2" [ | 0.902 | 0.482 | 0.355 | 2.7e-84 | |
| TAIR|locus:2122239 | 1136 | AT4G36180 [Arabidopsis thalian | 0.934 | 0.515 | 0.360 | 9.1e-81 | |
| TAIR|locus:2085949 | 1141 | AT3G24240 [Arabidopsis thalian | 0.829 | 0.455 | 0.359 | 1e-80 |
| TAIR|locus:2079142 AT3G47570 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1228 (437.3 bits), Expect = 5.5e-125, P = 5.5e-125
Identities = 268/616 (43%), Positives = 371/616 (60%)
Query: 6 ITLLQVAAF-EEGDLAALQAFKSMISHDPQGILNSWNDSRHFCEWEGITCDLRSKA---- 60
+ LL+ F +E D AL FKS +S D + +L+SWN S C W+G+TC ++K
Sbjct: 12 LMLLETHGFTDETDRQALLQFKSQVSEDKRVVLSSWNHSFPLCNWKGVTCGRKNKRVTHL 71
Query: 61 ------LSGLLSPQIGNLSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIP 114
L G++SP IGNLSFL ++L N G IP E G+L RLE L + N L G IP
Sbjct: 72 ELGRLQLGGVISPSIGNLSFLVSLDLYENFFGGTIPQEVGQLSRLEYLDMGINYLRGPIP 131
Query: 115 ANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTGGIPPFLGNLTSLEVV 174
L CSRL L L +N+L GS+P E SL L QL L NN+ G +P LGNLT LE +
Sbjct: 132 LGLYNCSRLLNLRLDSNRLGGSVPSELGSLTNLVQLNLYGNNMRGKLPTSLGNLTLLEQL 191
Query: 175 SLAGNPFGGNIPDSLGQLKELKTLGIGGNNLSGSIPPSIYNLSFLVIFSVSENQMHGSLP 234
+L+ N G IP + QL ++ +L + NN SG PP++YNLS L + + N G L
Sbjct: 192 ALSHNNLEGEIPSDVAQLTQIWSLQLVANNFSGVFPPALYNLSSLKLLGIGYNHFSGRLR 251
Query: 235 PSLGLYFPNLKLFQTNENFFSGSIPISLSNASKLEYVEIASNSFFGKLSVNFGGMKNLSY 294
P LG+ PNL F N+F+GSIP +LSN S LE + + N+ G + FG + NL
Sbjct: 252 PDLGILLPNLLSFNMGGNYFTGSIPTTLSNISTLERLGMNENNLTGSIPT-FGNVPNLKL 310
Query: 295 LILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLSSQLQILVLGT 354
L L N+LGS S ++ F+ SL NC++L+ L +G N+ G LP SIANLS++L L LG
Sbjct: 311 LFLHTNSLGSDSSRDLEFLTSLTNCTQLETLGIGRNRLGGDLPISIANLSAKLVTLDLGG 370
Query: 355 NQLYGSIPSGIGNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLG 414
+ GSIP IGNL+NL L ++N +G +P +GKLLNL+ L N SG IP+ +G
Sbjct: 371 TLISGSIPYDIGNLINLQKLILDQNMLSGPLPTSLGKLLNLRYLSLFSNRLSGGIPAFIG 430
Query: 415 NLSSLYEIFLGDNNLSGVIPSSLGNLERLAILEMFANELSGTIPGDIFNISSLSVSLDLA 474
N++ L + L +N G++P+SLGN L L + N+L+GTIP +I I L + LD++
Sbjct: 431 NMTMLETLDLSNNGFEGIVPTSLGNCSHLLELWIGDNKLNGTIPLEIMKIQQL-LRLDMS 489
Query: 475 ENHFVGSIPPRIGNLKALRCFDVSNNDLSGEIPSELGLCSSLEEIYLAENFFNGFIPSFF 534
N +GS+P IG L+ L + +N LSG++P LG C ++E ++L N F G IP
Sbjct: 490 GNSLIGSLPQDIGALQNLGTLSLGDNKLSGKLPQTLGNCLTMESLFLEGNLFYGDIPDL- 548
Query: 535 RTSRGIRKVDLSRNNFFGQIPIFLEALS-LEYLNLSFNDFEGRLPTRGIFANASAISVGG 593
+ G+++VDLS N+ G IP + + S LEYLNLSFN+ EG++P +GIF NA+ +S+ G
Sbjct: 549 KGLVGVKEVDLSNNDLSGSIPEYFASFSKLEYLNLSFNNLEGKVPVKGIFENATTVSIVG 608
Query: 594 CNRLCGGIHELQLPKC 609
N LCGGI QL C
Sbjct: 609 NNDLCGGIMGFQLKPC 624
|
|
| TAIR|locus:2075631 AT3G47090 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1219 (434.2 bits), Expect = 4.9e-124, P = 4.9e-124
Identities = 272/623 (43%), Positives = 370/623 (59%)
Query: 1 MFLFFITLLQVAAF---EEGDLAALQAFKSMISHDPQGILNSWNDSRHFCEWEGITC--- 54
+ L F L+Q+ A+ +E D AL KS +S + L++WN+S C W+ + C
Sbjct: 5 LLLAFNALMQLEAYGFTDESDRQALLEIKSQVSESKRDALSAWNNSFPLCSWKWVRCGRK 64
Query: 55 -------DLRSKALSGLLSPQIGNLSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDN 107
DL L G++SP IGNLSFL ++L NN+ G IP E G L RL+ L + N
Sbjct: 65 HKRVTRLDLGGLQLGGVISPSIGNLSFLIYLDLSNNSFGGTIPQEMGNLFRLKYLAVGFN 124
Query: 108 SLVGKIPANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTGGIPPFLGN 167
L G+IPA+LS CSRL L L +N L +P E SL KL L L +N+L G P F+ N
Sbjct: 125 YLEGEIPASLSNCSRLLYLDLFSNNLGDGVPSELGSLRKLLYLYLGLNDLKGKFPVFIRN 184
Query: 168 LTSLEVVSLAGNPFGGNIPDSLGQLKELKTLGIGGNNLSGSIPPSIYNLSFLVIFSVSEN 227
LTSL V++L N G IPD + L ++ +L + NN SG PP+ YNLS L + N
Sbjct: 185 LTSLIVLNLGYNHLEGEIPDDIAMLSQMVSLTLTMNNFSGVFPPAFYNLSSLENLYLLGN 244
Query: 228 QMHGSLPPSLGLYFPNLKLFQTNENFFSGSIPISLSNASKLEYVEIASNSFFGKLSVNFG 287
G+L P G PN+ + NF +G+IP +L+N S LE I N G +S NFG
Sbjct: 245 GFSGNLKPDFGNLLPNIHELSLHGNFLTGAIPTTLANISTLEMFGIGKNRMTGSISPNFG 304
Query: 288 GMKNLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLSSQL 347
++NL YL L N+LGS ++ F+++L NCS L LS+ N+ GALP SI N+S++L
Sbjct: 305 KLENLHYLELANNSLGSYSFGDLAFLDALTNCSHLHGLSVSYNRLGGALPTSIVNMSTEL 364
Query: 348 QILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSG 407
+L L N +YGSIP IGNL+ L SL +N TG +P +G L+ L L N FSG
Sbjct: 365 TVLNLKGNLIYGSIPHDIGNLIGLQSLLLADNLLTGPLPTSLGNLVGLGELILFSNRFSG 424
Query: 408 EIPSTLGNLSSLYEIFLGDNNLSGVIPSSLGNLERLAILEMFANELSGTIPGDIFNISSL 467
EIPS +GNL+ L +++L +N+ G++P SLG+ + L++ N+L+GTIP +I I +L
Sbjct: 425 EIPSFIGNLTQLVKLYLSNNSFEGIVPPSLGDCSHMLDLQIGYNKLNGTIPKEIMQIPTL 484
Query: 468 SVSLDLAENHFVGSIPPRIGNLKALRCFDVSNNDLSGEIPSELGLCSSLEEIYLAENFFN 527
V L++ N GS+P IG L+ L + NN+LSG +P LG C S+E IYL EN F+
Sbjct: 485 -VHLNMESNSLSGSLPNDIGRLQNLVELLLGNNNLSGHLPQTLGKCLSMEVIYLQENHFD 543
Query: 528 GFIPSFFRTSRGIRKVDLSRNNFFGQIPIFLEALS-LEYLNLSFNDFEGRLPTRGIFANA 586
G IP + G++ VDLS NN G I + E S LEYLNLS N+FEGR+PT GIF NA
Sbjct: 544 GTIPDI-KGLMGVKNVDLSNNNLSGSISEYFENFSKLEYLNLSDNNFEGRVPTEGIFQNA 602
Query: 587 SAISVGGCNRLCGGIHELQLPKC 609
+ +SV G LCG I EL+L C
Sbjct: 603 TLVSVFGNKNLCGSIKELKLKPC 625
|
|
| TAIR|locus:2149922 EFR "EF-TU receptor" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1216 (433.1 bits), Expect = 1.0e-123, P = 1.0e-123
Identities = 269/627 (42%), Positives = 373/627 (59%)
Query: 3 LFFITLLQVAAFE-EGDLAALQAFKSMIS-HDPQGILNSWNDSRHFCEWEGITCDLRSKA 60
L + + A F E D+ AL FKS +S ++ + +L SWN S FC W G+TC R +
Sbjct: 15 LLQVCIFAQARFSNETDMQALLEFKSQVSENNKREVLASWNHSSPFCNWIGVTCGRRRER 74
Query: 61 ----------LSGLLSPQIGNLSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLV 110
L+G++SP IGNLSFLR +NL +N+ IP + GRL RL+ L +S N L
Sbjct: 75 VISLNLGGFKLTGVISPSIGNLSFLRLLNLADNSFGSTIPQKVGRLFRLQYLNMSYNLLE 134
Query: 111 GKIPANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTGGIPPFLGNLTS 170
G+IP++LS CSRL+ + L +N L +P E SL KL L L NNLTG P LGNLTS
Sbjct: 135 GRIPSSLSNCSRLSTVDLSSNHLGHGVPSELGSLSKLAILDLSKNNLTGNFPASLGNLTS 194
Query: 171 LEVVSLAGNPFGGNIPDSLGQLKELKTLGIGGNNLSGSIPPSIYNLSFLVIFSVSENQMH 230
L+ + A N G IPD + +L ++ I N+ SG PP++YN+S L S+++N
Sbjct: 195 LQKLDFAYNQMRGEIPDEVARLTQMVFFQIALNSFSGGFPPALYNISSLESLSLADNSFS 254
Query: 231 GSLPPSLGLYFPNLKLFQTNENFFSGSIPISLSNASKLEYVEIASNSFFGKLSVNFGGMK 290
G+L G PNL+ N F+G+IP +L+N S LE +I+SN G + ++FG ++
Sbjct: 255 GNLRADFGYLLPNLRRLLLGTNQFTGAIPKTLANISSLERFDISSNYLSGSIPLSFGKLR 314
Query: 291 NLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLSSQLQIL 350
NL +L + N+LG+ S + F+ ++ANC++L+ L +G N+ G LP SIANLS+ L L
Sbjct: 315 NLWWLGIRNNSLGNNSSSGLEFIGAVANCTQLEYLDVGYNRLGGELPASIANLSTTLTSL 374
Query: 351 VLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIP 410
LG N + G+IP IGNLV+L L E N +G +P GKLLNLQ +D N SGEIP
Sbjct: 375 FLGQNLISGTIPHDIGNLVSLQELSLETNMLSGELPVSFGKLLNLQVVDLYSNAISGEIP 434
Query: 411 STLGNLSSLYEIFLGDNNLSGVIPSSLGNLERLAILEMFANELSGTIPGDIFNISSLSVS 470
S GN++ L ++ L N+ G IP SLG L L M N L+GTIP +I I SL+
Sbjct: 435 SYFGNMTRLQKLHLNSNSFHGRIPQSLGRCRYLLDLWMDTNRLNGTIPQEILQIPSLAY- 493
Query: 471 LDLAENHFVGSIPPRIGNLKALRCFDVSNNDLSGEIPSELGLCSSLEEIYLAENFFNGFI 530
+DL+ N G P +G L+ L S N LSG++P +G C S+E +++ N F+G I
Sbjct: 494 IDLSNNFLTGHFPEEVGKLELLVGLGASYNKLSGKMPQAIGGCLSMEFLFMQGNSFDGAI 553
Query: 531 PSFFRTSRGIRKVDLSRNNFFGQIPIFLEAL-SLEYLNLSFNDFEGRLPTRGIFANASAI 589
P R ++ VD S NN G+IP +L +L SL LNLS N FEGR+PT G+F NA+A+
Sbjct: 554 PDISRLV-SLKNVDFSNNNLSGRIPRYLASLPSLRNLNLSMNKFEGRVPTTGVFRNATAV 612
Query: 590 SVGGCNRLCGGIHELQLPKCPEHESSR 616
SV G +CGG+ E+QL C S R
Sbjct: 613 SVFGNTNICGGVREMQLKPCIVQASPR 639
|
|
| UNIPROTKB|Q40640 Xa21 "Receptor kinase-like protein" [Oryza sativa (taxid:4530)] | Back alignment and assigned GO terms |
|---|
Score = 1215 (432.8 bits), Expect = 1.3e-123, P = 1.3e-123
Identities = 276/610 (45%), Positives = 364/610 (59%)
Query: 18 DLAALQAFKSMISHDPQGIL--NSWNDSRHFCEWEGITCD--------------LRSKAL 61
+LA L S++ Q + N+ +H C W G+ C LRS L
Sbjct: 33 ELALLSFKSSLLYQGGQSLASWNTSGHGQH-CTWVGVVCGRRRRRHPHRVVKLLLRSSNL 91
Query: 62 SGLLSPQIGNLSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPANLSYCS 121
SG++SP +GNLSFLRE++L +N + GEIP E RL RL+ L LSDNS+ G IPA + C+
Sbjct: 92 SGIISPSLGNLSFLRELDLGDNYLSGEIPPELSRLSRLQLLELSDNSIQGSIPAAIGACT 151
Query: 122 RLTVLVLGNNKLVGSIPFEF-VSLYKLKQLALPMNNLTGGIPPFLGNLTSLEVVSLAGNP 180
+LT L L +N+L G IP E SL L L L N L+G IP LGNLTSL+ L+ N
Sbjct: 152 KLTSLDLSHNQLRGMIPREIGASLKHLSNLYLYKNGLSGEIPSALGNLTSLQEFDLSFNR 211
Query: 181 FGGNIPDSLGQLKELKTLGIGGNNLSGSIPPSIYNLSFLVIFSVSENQMHGSLPPSLGLY 240
G IP SLGQL L T+ +G NNLSG IP SI+NLS L FSV EN++ G +P +
Sbjct: 212 LSGAIPSSLGQLSSLLTMNLGQNNLSGMIPNSIWNLSSLRAFSVRENKLGGMIPTNAFKT 271
Query: 241 FPNLKLFQTNENFFSGSIPISLSNASKLEYVEIASNSFFGKLSVNFGGMKNLSYLILEYN 300
L++ N F G IP S++NAS L ++I N F G ++ FG ++NL+ L L N
Sbjct: 272 LHLLEVIDMGTNRFHGKIPASVANASHLTVIQIYGNLFSGIITSGFGRLRNLTELYLWRN 331
Query: 301 NLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLSSQLQILVLGTNQLYGS 360
+ E D+ GF++ L NCSKLQ L+LG N G LP+S +NLS+ L L L N++ GS
Sbjct: 332 LFQTREQDDWGFISDLTNCSKLQTLNLGENNLGGVLPNSFSNLSTSLSFLALELNKITGS 391
Query: 361 IPSGIGNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLY 420
IP IGNL+ L L N F GS+P +G+L NL L N+ SG IP +GNL+ L
Sbjct: 392 IPKDIGNLIGLQHLYLCNNNFRGSLPSSLGRLKNLGILLAYENNLSGSIPLAIGNLTELN 451
Query: 421 EIFLGDNNLSGVIPSSLGNLERLAILEMFANELSGTIPGDIFNISSLSVSLDLAENHFVG 480
+ LG N SG IP +L NL L L + N LSG IP ++FNI +LS+ +++++N+ G
Sbjct: 452 ILLLGTNKFSGWIPYTLSNLTNLLSLGLSTNNLSGPIPSELFNIQTLSIMINVSKNNLEG 511
Query: 481 SIPPRIGNLKALRCFDVSNNDLSGEIPSELGLCSSLEEIYLAENFFNGFIPSFFRTSRGI 540
SIP IG+LK L F +N LSG+IP+ LG C L +YL N +G IPS +G+
Sbjct: 512 SIPQEIGHLKNLVEFHAESNRLSGKIPNTLGDCQLLRYLYLQNNLLSGSIPSALGQLKGL 571
Query: 541 RKVDLSRNNFFGQIPIFLEALS-LEYLNLSFNDFEGRLPTRGIFANASAISVGGCNRLCG 599
+DLS NN GQIP L ++ L LNLSFN F G +PT G FA AS IS+ G +LCG
Sbjct: 572 ETLDLSSNNLSGQIPTSLADITMLHSLNLSFNSFVGEVPTIGAFAAASGISIQGNAKLCG 631
Query: 600 GIHELQLPKC 609
GI +L LP+C
Sbjct: 632 GIPDLHLPRC 641
|
|
| TAIR|locus:2075661 AT3G47110 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1214 (432.4 bits), Expect = 1.7e-123, P = 1.7e-123
Identities = 273/606 (45%), Positives = 366/606 (60%)
Query: 15 EEGDLAALQAFKSMISHDPQGILNSWNDSRHFCEWEGITCDLRSKA----------LSGL 64
EE D AL FKS +S + +L SWNDS C W G+ C L+ + L+G+
Sbjct: 37 EETDKQALLEFKSQVSETSRVVLGSWNDSLPLCSWTGVKCGLKHRRVTGVDLGGLKLTGV 96
Query: 65 LSPQIGNLSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLT 124
+SP +GNLSFLR +NL +N G IP E G L RL+ L +S+N G IP LS CS L+
Sbjct: 97 VSPFVGNLSFLRSLNLADNFFHGAIPSEVGNLFRLQYLNMSNNLFGGVIPVVLSNCSSLS 156
Query: 125 VLVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTGGIPPFLGNLTSLEVVSLAGNPFGGN 184
L L +N L +P EF SL KL L+L NNLTG P LGNLTSL+++ N G
Sbjct: 157 TLDLSSNHLEQGVPLEFGSLSKLVLLSLGRNNLTGKFPASLGNLTSLQMLDFIYNQIEGE 216
Query: 185 IPDSLGQLKELKTLGIGGNNLSGSIPPSIYNLSFLVIFSVSENQMHGSLPPSLGLYFPNL 244
IP + +LK++ I N +G PP IYNLS L+ S++ N G+L P G PNL
Sbjct: 217 IPGDIARLKQMIFFRIALNKFNGVFPPPIYNLSSLIFLSITGNSFSGTLRPDFGSLLPNL 276
Query: 245 KLFQTNENFFSGSIPISLSNASKLEYVEIASNSFFGKLSVNFGGMKNLSYLILEYNNLGS 304
++ N F+G+IP +LSN S L ++I SN GK+ ++FG ++NL L L N+LG+
Sbjct: 277 QILYMGINSFTGTIPETLSNISSLRQLDIPSNHLTGKIPLSFGRLQNLLLLGLNNNSLGN 336
Query: 305 GESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLSSQLQILVLGTNQLYGSIPSG 364
S ++ F+ +L NCS+LQ L++G N+ G LP IANLS+QL L LG N + GSIP G
Sbjct: 337 YSSGDLDFLGALTNCSQLQYLNVGFNKLGGQLPVFIANLSTQLTELSLGGNLISGSIPHG 396
Query: 365 IGNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFL 424
IGNLV+L +L EN TG +P +G+L L+ + N SGEIPS+LGN+S L ++L
Sbjct: 397 IGNLVSLQTLDLGENLLTGKLPPSLGELSELRKVLLYSNGLSGEIPSSLGNISGLTYLYL 456
Query: 425 GDNNLSGVIPSSLGNLERLAILEMFANELSGTIPGDIFNISSLSVSLDLAENHFVGSIPP 484
+N+ G IPSSLG+ L L + N+L+G+IP ++ + SL V L+++ N VG +
Sbjct: 457 LNNSFEGSIPSSLGSCSYLLDLNLGTNKLNGSIPHELMELPSLVV-LNVSFNLLVGPLRQ 515
Query: 485 RIGNLKALRCFDVSNNDLSGEIPSELGLCSSLEEIYLAENFFNGFIPSFFRTSRGIRKVD 544
IG LK L DVS N LSG+IP L C SLE + L N F G IP R G+R +D
Sbjct: 516 DIGKLKFLLALDVSYNKLSGQIPQTLANCLSLEFLLLQGNSFVGPIPDI-RGLTGLRFLD 574
Query: 545 LSRNNFFGQIPIFLEALS-LEYLNLSFNDFEGRLPTRGIFANASAISVGGCNRLCGGIHE 603
LS+NN G IP ++ S L+ LNLS N+F+G +PT G+F N SA+SV G LCGGI
Sbjct: 575 LSKNNLSGTIPEYMANFSKLQNLNLSLNNFDGAVPTEGVFRNTSAMSVFGNINLCGGIPS 634
Query: 604 LQLPKC 609
LQL C
Sbjct: 635 LQLQPC 640
|
|
| TAIR|locus:2079157 AT3G47580 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1155 (411.6 bits), Expect = 3.0e-117, P = 3.0e-117
Identities = 263/618 (42%), Positives = 359/618 (58%)
Query: 8 LLQVAAF-EEGDLAALQAFKSMISHDPQGILNSWNDSRHFCEWEGITCDLRSKA------ 60
LL F +E D AL FKS +S + +L+SWN+S C W+ +TC + K
Sbjct: 14 LLGADGFTDETDRQALLEFKSQVSEGKRDVLSSWNNSFPLCNWKWVTCGRKHKRVTHLNL 73
Query: 61 ----LSGLLSPQIGNLSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPAN 116
L G++SP IGN+SFL ++L +N G IP E G L RLE L ++ NSL G IPA
Sbjct: 74 GGLQLGGIVSPSIGNVSFLISLDLSDNAFGGIIPREVGNLFRLEHLYMAFNSLEGGIPAT 133
Query: 117 LSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTGGIPPFLGNLTSLEVVSL 176
LS CSRL L L +N L +P E SL KL L L NNL G +P LGNLTSL+ +
Sbjct: 134 LSNCSRLLNLDLYSNPLRQGVPSELGSLTKLVILDLGRNNLKGKLPRSLGNLTSLKSLGF 193
Query: 177 AGNPFGGNIPDSLGQLKELKTLGIGGNNLSGSIPPSIYNLSFLVIFSVSENQMHGSLPPS 236
N G +PD L +L ++ LG+ N G PP+IYNLS L + + GSL P
Sbjct: 194 TDNNIEGEVPDELARLSQMVGLGLSMNKFFGVFPPAIYNLSALEDLFLFGSGFSGSLKPD 253
Query: 237 LGLYFPNLKLFQTNENFFSGSIPISLSNASKLEYVEIASNSFFGKLSVNFGGMKNLSYLI 296
G PN++ EN G+IP +LSN S L+ I N G + NFG + +L YL
Sbjct: 254 FGNLLPNIRELNLGENDLVGAIPTTLSNISTLQKFGINKNMMTGGIYPNFGKVPSLQYLD 313
Query: 297 LEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLSSQLQILVLGTNQ 356
L N LGS ++ F++SL NC+ LQ+LS+G + GALP SIAN+S++L L L N
Sbjct: 314 LSENPLGSYTFGDLEFIDSLTNCTHLQLLSVGYTRLGGALPTSIANMSTELISLNLIGNH 373
Query: 357 LYGSIPSGIGNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLGNL 416
+GSIP IGNL+ L LQ +N TG +P +GKLL L L N SGEIPS +GNL
Sbjct: 374 FFGSIPQDIGNLIGLQRLQLGKNMLTGPLPTSLGKLLRLGLLSLYSNRMSGEIPSFIGNL 433
Query: 417 SSLYEIFLGDNNLSGVIPSSLGNLERLAILEMFANELSGTIPGDIFNISSLSVSLDLAEN 476
+ L ++L +N+ G++P SLG + L + N+L+GTIP +I I +L V+L + N
Sbjct: 434 TQLEILYLSNNSFEGIVPPSLGKCSHMLDLRIGYNKLNGTIPKEIMQIPTL-VNLSMEGN 492
Query: 477 HFVGSIPPRIGNLKALRCFDVSNNDLSGEIPSELGLCSSLEEIYLAENFFNGFIPSFFRT 536
GS+P IG+L+ L + NN SG +P LG C ++E+++L N F+G IP+ R
Sbjct: 493 SLSGSLPNDIGSLQNLVKLSLENNKFSGHLPQTLGNCLAMEQLFLQGNSFDGAIPNI-RG 551
Query: 537 SRGIRKVDLSRNNFFGQIPIFLEALS-LEYLNLSFNDFEGRLPTRGIFANASAISVGGCN 595
G+R+VDLS N+ G IP + S LEYLNLS N+F G++P++G F N++ + V G
Sbjct: 552 LMGVRRVDLSNNDLSGSIPEYFANFSKLEYLNLSINNFTGKVPSKGNFQNSTIVFVFGNK 611
Query: 596 RLCGGIHELQLPKCPEHE 613
LCGGI +L+L C E
Sbjct: 612 NLCGGIKDLKLKPCLAQE 629
|
|
| UNIPROTKB|O24435 O24435 "Receptor kinase-like protein" [Oryza sativa (taxid:4530)] | Back alignment and assigned GO terms |
|---|
Score = 1086 (387.4 bits), Expect = 6.1e-110, P = 6.1e-110
Identities = 255/596 (42%), Positives = 331/596 (55%)
Query: 17 GDLAALQAFKSMISHDPQGILNSWNDSRH--FCEWEGITCDLRSKALSGLLSPQIGNLSF 74
GD AL +FKS + + L SWN S H C W G+ C R P
Sbjct: 33 GDELALLSFKSSLLYQGGQSLASWNTSGHGQHCTWVGVVCGRRH--------PHR----- 79
Query: 75 LREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLTVLVLGNNKLV 134
+ ++ L ++ + G I G L L TL LSDN L GKIP LS SRL LVL N L
Sbjct: 80 VVKLRLRSSNLAGIISPSLGNLSFLRTLQLSDNHLSGKIPQELSRLSRLQQLVLNFNSLS 139
Query: 135 GSIPFEFVSLYKLKQLALPMNNLTGGIPPFLGNLTSLEVVSLAGNPFGGNIPDSLGQLKE 194
G IP +L L L L N L+G IP LG LT L ++LA N G+IP S GQL+
Sbjct: 140 GEIPAALGNLTSLSVLELTNNTLSGAIPSSLGKLTGLTDLALAENTLSGSIPSSFGQLRR 199
Query: 195 LKTLGIGGNNLSGSIPPSIYNLSFLVIFSVSENQMHGSLPPSLGLYFPNLKLFQTNENFF 254
L L + NNLSG+IP I+N+S L IF V N++ G+LP + P+L+ N F
Sbjct: 200 LSFLSLAFNNLSGAIPDPIWNISSLTIFEVISNKLSGTLPTNAFSNLPSLQEVYMYYNQF 259
Query: 255 SGSIPISLSNASKLEYVEIASNSFFGKLSVNFGGMKNLSYLILEYNNLGSGESDEMGFMN 314
G IP S+ NAS + I NSF G + G M+NL L L + E+++ FM
Sbjct: 260 HGRIPASIGNASNISIFTIGLNSFSGVVPPEIGRMRNLQRLELPETLSEAEETNDWKFMT 319
Query: 315 SLANCSKLQVLSLGGNQFRGALPHSIANLSSQLQILVLGTNQLYGSIPSGIGNLVNLYSL 374
+L NCS LQ + LGG +F G LP S++NLSS L L + N++ GS+P IGNLVNL L
Sbjct: 320 ALTNCSNLQEVELGGCKFGGVLPDSVSNLSSSLVSLSIRDNKISGSLPRDIGNLVNLQYL 379
Query: 375 QTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLGDNNLSGVIP 434
N TGS+P KL NL+ L N G +P T+GNL+ L + + N G IP
Sbjct: 380 SLANNSLTGSLPSSFSKLKNLRRLTVDNNKLIGSLPLTIGNLTQLTNMEVQFNAFGGTIP 439
Query: 435 SSLGNLERLAILEMFANELSGTIPGDIFNISSLSVSLDLAENHFVGSIPPRIGNLKALRC 494
S+LGNL +L + + N G IP +IF+I +LS LD++ N+ GSIP IG LK +
Sbjct: 440 STLGNLTKLFQINLGHNNFIGQIPIEIFSIPALSEILDVSHNNLEGSIPKEIGKLKNIVE 499
Query: 495 FDVSNNDLSGEIPSELGLCSSLEEIYLAENFFNGFIPSFFRTSRGIRKVDLSRNNFFGQI 554
F +N LSGE PS +G C L+ ++L NF NG IP +G+ +DLS NN GQI
Sbjct: 500 FHADSNKLSGENPSTIGECQLLQHLFLQNNFLNGSIPIALTQLKGLDTLDLSGNNLSGQI 559
Query: 555 PIFLEALSLEY-LNLSFNDFEGRLPTRGIFANASAISVGGCNRLCGGIHELQLPKC 609
P+ L + L + LNLSFN F G +PT G+FANAS I + G +CGGI EL LP C
Sbjct: 560 PMSLGDMPLLHSLNLSFNSFHGEVPTNGVFANASEIYIQGNAHICGGIPELHLPTC 615
|
|
| TAIR|locus:2170483 FLS2 "FLAGELLIN-SENSITIVE 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 844 (302.2 bits), Expect = 2.7e-84, P = 2.7e-84
Identities = 218/613 (35%), Positives = 317/613 (51%)
Query: 2 FLFFITLLQVAAFEEGDLAALQAFKSMISHDPQGILNSWN---DSRHFCEWEGITCD--- 55
F FF L +FE ++ AL++FK+ IS+DP G+L+ W RH C W GITCD
Sbjct: 15 FFFFGIALAKQSFEP-EIEALKSFKNGISNDPLGVLSDWTIIGSLRH-CNWTGITCDSTG 72
Query: 56 ------LRSKALSGLLSPQIGNLSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSL 109
L K L G+LSP I NL++L+ ++L +N+ G+IP E G+L L L+L N
Sbjct: 73 HVVSVSLLEKQLEGVLSPAIANLTYLQVLDLTSNSFTGKIPAEIGKLTELNQLILYLNYF 132
Query: 110 VGKIPANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTGGIPPFLGNLT 169
G IP+ + + L L NN L G +P E L + NNLTG IP LG+L
Sbjct: 133 SGSIPSGIWELKNIFYLDLRNNLLSGDVPEEICKTSSLVLIGFDYNNLTGKIPECLGDLV 192
Query: 170 SLEVVSLAGNPFGGNIPDSLGQLKELKTLGIGGNNLSGSIPPSIYNLSFLVIFSVSENQM 229
L++ AGN G+IP S+G L L L + GN L+G IP NL L ++EN +
Sbjct: 193 HLQMFVAAGNHLTGSIPVSIGTLANLTDLDLSGNQLTGKIPRDFGNLLNLQSLVLTENLL 252
Query: 230 HGSLPPSLGLYFPNLKLFQTNENFFSGSIPISLSNASKLEYVEIASNSFFGKLSVNFGGM 289
G +P +G +L + +N +G IP L N +L+ + I N + + +
Sbjct: 253 EGDIPAEIG-NCSSLVQLELYDNQLTGKIPAELGNLVQLQALRIYKNKLTSSIPSSLFRL 311
Query: 290 KNLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLSSQLQI 349
L++L L N+L S+E+GF+ SL +VL+L N F G P SI NL + L +
Sbjct: 312 TQLTHLGLSENHLVGPISEEIGFLESL------EVLTLHSNNFTGEFPQSITNLRN-LTV 364
Query: 350 LVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSIPKEMG-----KLL----------- 393
L +G N + G +P+ +G L NL +L +N TG IP + KLL
Sbjct: 365 LTVGFNNISGELPADLGLLTNLRNLSAHDNLLTGPIPSSISNCTGLKLLDLSHNQMTGEI 424
Query: 394 -------NLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLGDNNLSGVIPSSLGNLERLAIL 446
NL + G NHF+GEIP + N S+L + + DNNL+G + +G L++L IL
Sbjct: 425 PRGFGRMNLTFISIGRNHFTGEIPDDIFNCSNLETLSVADNNLTGTLKPLIGKLQKLRIL 484
Query: 447 EMFANELSGTIPGDIFNISSLSVSLDLAENHFVGSIPPRIGNLKALRCFDVSNNDLSGEI 506
++ N L+G IP +I N+ L++ L L N F G IP + NL L+ + +NDL G I
Sbjct: 485 QVSYNSLTGPIPREIGNLKDLNI-LYLHSNGFTGRIPREMSNLTLLQGLRMYSNDLEGPI 543
Query: 507 PSELGLCSSLEEIYLAENFFNGFIPSFFRTSRGIRKVDLSRNNFFGQIPIFLEALSL-EY 565
P E+ L + L+ N F+G IP+ F + + L N F G IP L++LSL
Sbjct: 544 PEEMFDMKLLSVLDLSNNKFSGQIPALFSKLESLTYLSLQGNKFNGSIPASLKSLSLLNT 603
Query: 566 LNLSFNDFEGRLP 578
++S N G +P
Sbjct: 604 FDISDNLLTGTIP 616
|
|
| TAIR|locus:2122239 AT4G36180 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 811 (290.5 bits), Expect = 9.1e-81, P = 9.1e-81
Identities = 223/618 (36%), Positives = 321/618 (51%)
Query: 2 FLFFIT---LLQVAAFEEGDLAALQAFKSMISHDPQGILNSWNDSRHF--CEWEGITC-- 54
F+F + L+ A + ++ AL AFK + HDP G L SW+ S C+W G+ C
Sbjct: 9 FIFLVIYAPLVSYADESQAEIDALTAFKLNL-HDPLGALTSWDPSTPAAPCDWRGVGCTN 67
Query: 55 ----DLRSKAL--SGLLSPQIGNLSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNS 108
++R L SG +S +I L LR+++L +N+ G IP RL ++ L NS
Sbjct: 68 HRVTEIRLPRLQLSGRISDRISGLRMLRKLSLRSNSFNGTIPTSLAYCTRLLSVFLQYNS 127
Query: 109 LVGKIPANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTGGIPPFLGNL 168
L GK+P + + L V + N+L G IP S L+ L + N +G IP L NL
Sbjct: 128 LSGKLPPAMRNLTSLEVFNVAGNRLSGEIPVGLPS--SLQFLDISSNTFSGQIPSGLANL 185
Query: 169 TSLEVVSLAGNPFGGNIPDSLGQLKELKTLGIGGNNLSGSIPPSIYNLSFLVIFSVSENQ 228
T L++++L+ N G IP SLG L+ L+ L + N L G++P +I N S LV S SEN+
Sbjct: 186 TQLQLLNLSYNQLTGEIPASLGNLQSLQYLWLDFNLLQGTLPSAISNCSSLVHLSASENE 245
Query: 229 MHGSLPPSLGLYFPNLKLFQTNENFFSGSIPISLSNASKLEYVEIASNSFFG--KLSVNF 286
+ G +P + G P L++ + N FSG++P SL + L V++ N+F +
Sbjct: 246 IGGVIPAAYGA-LPKLEVLSLSNNNFSGTVPFSLFCNTSLTIVQLGFNAFSDIVRPETTA 304
Query: 287 GGMKNLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLSSQ 346
L L L+ N + SG F L N L+ L + GN F G +P I NL +
Sbjct: 305 NCRTGLQVLDLQENRI-SGR-----FPLWLTNILSLKNLDVSGNLFSGEIPPDIGNLK-R 357
Query: 347 LQILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFS 406
L+ L L N L G IP I +L L E N G IP+ +G + L+ L G N FS
Sbjct: 358 LEELKLANNSLTGEIPVEIKQCGSLDVLDFEGNSLKGQIPEFLGYMKALKVLSLGRNSFS 417
Query: 407 GEIPSTLGNLSSLYEIFLGDNNLSGVIPSSLGNLERLAILEMFANELSGTIPGDIFNISS 466
G +PS++ NL L + LG+NNL+G P L L L+ L++ N SG +P I N+S+
Sbjct: 418 GYVPSSMVNLQQLERLNLGENNLNGSFPVELMALTSLSELDLSGNRFSGAVPVSISNLSN 477
Query: 467 LSVSLDLAENHFVGSIPPRIGNLKALRCFDVSNNDLSGEIPSELGLCSSLEEIYLAENFF 526
LS L+L+ N F G IP +GNL L D+S ++SGE+P EL +++ I L N F
Sbjct: 478 LSF-LNLSGNGFSGEIPASVGNLFKLTALDLSKQNMSGEVPVELSGLPNVQVIALQGNNF 536
Query: 527 NGFIPSFFRTSRGIRKVDLSRNNFFGQIPIFLEALSLEY-LNLSFNDFEGRLPTRGIFAN 585
+G +P F + +R V+LS N+F G+IP L L L+LS N G +P N
Sbjct: 537 SGVVPEGFSSLVSLRYVNLSSNSFSGEIPQTFGFLRLLVSLSLSDNHISGSIPPE--IGN 594
Query: 586 ASAISVGGC--NRLCGGI 601
SA+ V NRL G I
Sbjct: 595 CSALEVLELRSNRLMGHI 612
|
|
| TAIR|locus:2085949 AT3G24240 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 811 (290.5 bits), Expect = 1.0e-80, P = 1.0e-80
Identities = 192/534 (35%), Positives = 300/534 (56%)
Query: 61 LSGLLSPQIGNLSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPANLSYC 120
L+G L +G+ L+ ++L +N + G+IP +LR LETL+L+ N L GKIP ++S C
Sbjct: 117 LTGTLPESLGDCLGLKVLDLSSNGLVGDIPWSLSKLRNLETLILNSNQLTGKIPPDISKC 176
Query: 121 SRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPMNN-LTGGIPPFLGNLTSLEVVSLAGN 179
S+L L+L +N L GSIP E L L+ + + N ++G IP +G+ ++L V+ LA
Sbjct: 177 SKLKSLILFDNLLTGSIPTELGKLSGLEVIRIGGNKEISGQIPSEIGDCSNLTVLGLAET 236
Query: 180 PFGGNIPDSLGQLKELKTLGIGGNNLSGSIPPSIYNLSFLVIFSVSENQMHGSLPPSLGL 239
GN+P SLG+LK+L+TL I +SG IP + N S LV + EN + GS+P +G
Sbjct: 237 SVSGNLPSSLGKLKKLETLSIYTTMISGEIPSDLGNCSELVDLFLYENSLSGSIPREIGQ 296
Query: 240 YFPNLKLFQTNENFFSGSIPISLSNASKLEYVEIASNSFFGKLSVNFGGMKNLSYLILEY 299
+LF +N G IP + N S L+ ++++ N G + + G + L ++
Sbjct: 297 LTKLEQLFLW-QNSLVGGIPEEIGNCSNLKMIDLSLNLLSGSIPSSIGRLSFLEEFMISD 355
Query: 300 NNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLSSQLQILVLGTNQLYG 359
N SG +++NCS L L L NQ G +P + L+ +L + +NQL G
Sbjct: 356 NKF-SGS-----IPTTISNCSSLVQLQLDKNQISGLIPSELGTLT-KLTLFFAWSNQLEG 408
Query: 360 SIPSGIGNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSL 419
SIP G+ + +L +L N TG+IP + L NL L N SG IP +GN SSL
Sbjct: 409 SIPPGLADCTDLQALDLSRNSLTGTIPSGLFMLRNLTKLLLISNSLSGFIPQEIGNCSSL 468
Query: 420 YEIFLGDNNLSGVIPSSLGNLERLAILEMFANELSGTIPGDIFNISSLSVSLDLAENHFV 479
+ LG N ++G IPS +G+L+++ L+ +N L G +P +I + S L + +DL+ N
Sbjct: 469 VRLRLGFNRITGEIPSGIGSLKKINFLDFSSNRLHGKVPDEIGSCSELQM-IDLSNNSLE 527
Query: 480 GSIPPRIGNLKALRCFDVSNNDLSGEIPSELGLCSSLEEIYLAENFFNGFIPSFFRTSRG 539
GS+P + +L L+ DVS N SG+IP+ LG SL ++ L++N F+G IP+ G
Sbjct: 528 GSLPNPVSSLSGLQVLDVSANQFSGKIPASLGRLVSLNKLILSKNLFSGSIPTSLGMCSG 587
Query: 540 IRKVDLSRNNFFGQIPIFLEAL-SLEY-LNLSFNDFEGRLPTRGIFANASAISV 591
++ +DL N G+IP L + +LE LNLS N G++P++ A+ + +S+
Sbjct: 588 LQLLDLGSNELSGEIPSELGDIENLEIALNLSSNRLTGKIPSK--IASLNKLSI 639
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
 |
 |
 |
 |
 |
 |
 |
 |
||
 | gw1.XI.617.1 | hypothetical protein (973 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 627 | |||
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 1e-100 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 7e-16 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 1e-12 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 2e-12 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 4e-12 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 5e-11 | |
| pfam08263 | 42 | pfam08263, LRRNT_2, Leucine rich repeat N-terminal | 3e-10 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 2e-09 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 3e-09 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 8e-09 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 3e-08 | |
| COG4886 | 394 | COG4886, COG4886, Leucine-rich repeat (LRR) protei | 6e-08 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 6e-07 | |
| COG4886 | 394 | COG4886, COG4886, Leucine-rich repeat (LRR) protei | 1e-05 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 7e-05 | |
| pfam13855 | 60 | pfam13855, LRR_8, Leucine rich repeat | 2e-04 | |
| cd00116 | 319 | cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo | 3e-04 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 5e-04 | |
| COG4886 | 394 | COG4886, COG4886, Leucine-rich repeat (LRR) protei | 7e-04 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 325 bits (835), Expect = e-100
Identities = 232/622 (37%), Positives = 321/622 (51%), Gaps = 28/622 (4%)
Query: 1 MFLFFITLLQVAAFEEGDLAALQAFKSMISHDPQGILNSWNDSRHFCEWEGITC------ 54
+F+ F L + +L L +FKS I +DP L++WN S C W+GITC
Sbjct: 13 IFMLFFLFLNFSMLHAEELELLLSFKSSI-NDPLKYLSNWNSSADVCLWQGITCNNSSRV 71
Query: 55 ---DLRSKALSGLLSPQIGNLSFLREINLMNNTIQGEIPLE-FGRLRRLETLLLSDNSLV 110
DL K +SG +S I L +++ INL NN + G IP + F L L LS+N+
Sbjct: 72 VSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFT 131
Query: 111 GKIPANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTGGIPPFLGNLTS 170
G IP L L L NN L G IP + S LK L L N L G IP L NLTS
Sbjct: 132 GSIPRGSIPN--LETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTS 189
Query: 171 LEVVSLAGNPFGGNIPDSLGQLKELKTLGIGGNNLSGSIPPSIYNLSFLVIFSVSENQMH 230
LE ++LA N G IP LGQ+K LK + +G NNLSG IP I L+ L + N +
Sbjct: 190 LEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLT 249
Query: 231 GSLPPSLGLYFPNLKLFQTNENFFSGSIPISLSNASKLEYVEIASNSFFGKLSVNFGGMK 290
G +P SLG NL+ +N SG IP S+ + KL ++++ NS G++ ++
Sbjct: 250 GPIPSSLG-NLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQ 308
Query: 291 NLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLSSQ--LQ 348
NL L L NN +G+ +L + +LQVL L N+F G +P NL L
Sbjct: 309 NLEILHLFSNNF-TGKIPV-----ALTSLPRLQVLQLWSNKFSGEIP---KNLGKHNNLT 359
Query: 349 ILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGE 408
+L L TN L G IP G+ + NL+ L N G IPK +G +L+ + N FSGE
Sbjct: 360 VLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGE 419
Query: 409 IPSTLGNLSSLYEIFLGDNNLSGVIPSSLGNLERLAILEMFANELSGTIPGDIFNISSLS 468
+PS L +Y + + +NNL G I S ++ L +L + N+ G +P D F L
Sbjct: 420 LPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLP-DSFGSKRLE 478
Query: 469 VSLDLAENHFVGSIPPRIGNLKALRCFDVSNNDLSGEIPSELGLCSSLEEIYLAENFFNG 528
+LDL+ N F G++P ++G+L L +S N LSGEIP EL C L + L+ N +G
Sbjct: 479 -NLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSG 537
Query: 529 FIPSFFRTSRGIRKVDLSRNNFFGQIPIFLEAL-SLEYLNLSFNDFEGRLPTRGIFANAS 587
IP+ F + ++DLS+N G+IP L + SL +N+S N G LP+ G F +
Sbjct: 538 QIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAIN 597
Query: 588 AISVGGCNRLCGGIHELQLPKC 609
A +V G LCGG LP C
Sbjct: 598 ASAVAGNIDLCGGDTTSGLPPC 619
|
Length = 968 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 80.6 bits (199), Expect = 7e-16
Identities = 41/88 (46%), Positives = 58/88 (65%)
Query: 126 LVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTGGIPPFLGNLTSLEVVSLAGNPFGGNI 185
L L N L G IP + L L+ + L N++ G IPP LG++TSLEV+ L+ N F G+I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482
Query: 186 PDSLGQLKELKTLGIGGNNLSGSIPPSI 213
P+SLGQL L+ L + GN+LSG +P ++
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAAL 510
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 70.2 bits (172), Expect = 1e-12
Identities = 34/90 (37%), Positives = 52/90 (57%), Gaps = 1/90 (1%)
Query: 325 LSLGGNQFRGALPHSIANLSSQLQILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGS 384
L L RG +P+ I+ L LQ + L N + G+IP +G++ +L L N F GS
Sbjct: 423 LGLDNQGLRGFIPNDISKLR-HLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS 481
Query: 385 IPKEMGKLLNLQGLDFGGNHFSGEIPSTLG 414
IP+ +G+L +L+ L+ GN SG +P+ LG
Sbjct: 482 IPESLGQLTSLRILNLNGNSLSGRVPAALG 511
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 69.5 bits (170), Expect = 2e-12
Identities = 33/77 (42%), Positives = 47/77 (61%)
Query: 383 GSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLGDNNLSGVIPSSLGNLER 442
G IP ++ KL +LQ ++ GN G IP +LG+++SL + L N+ +G IP SLG L
Sbjct: 432 GFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTS 491
Query: 443 LAILEMFANELSGTIPG 459
L IL + N LSG +P
Sbjct: 492 LRILNLNGNSLSGRVPA 508
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 68.7 bits (168), Expect = 4e-12
Identities = 36/85 (42%), Positives = 52/85 (61%), Gaps = 1/85 (1%)
Query: 355 NQ-LYGSIPSGIGNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIPSTL 413
NQ L G IP+ I L +L S+ N G+IP +G + +L+ LD N F+G IP +L
Sbjct: 427 NQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESL 486
Query: 414 GNLSSLYEIFLGDNNLSGVIPSSLG 438
G L+SL + L N+LSG +P++LG
Sbjct: 487 GQLTSLRILNLNGNSLSGRVPAALG 511
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 65.2 bits (159), Expect = 5e-11
Identities = 40/115 (34%), Positives = 54/115 (46%), Gaps = 25/115 (21%)
Query: 397 GLDFGGNHFSGEIPSTLGNLSSLYEIFLGDNNLSGVIPSSLGNLERLAILEMFANELSGT 456
GL G IP+ + L L I L N++ G IP SLG
Sbjct: 422 GLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLG------------------ 463
Query: 457 IPGDIFNISSLSVSLDLAENHFVGSIPPRIGNLKALRCFDVSNNDLSGEIPSELG 511
+I+SL V LDL+ N F GSIP +G L +LR +++ N LSG +P+ LG
Sbjct: 464 ------SITSLEV-LDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALG 511
|
Length = 623 |
| >gnl|CDD|219766 pfam08263, LRRNT_2, Leucine rich repeat N-terminal domain | Back alignment and domain information |
|---|
Score = 55.4 bits (134), Expect = 3e-10
Identities = 21/39 (53%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 18 DLAALQAFKSMISHDPQGILNSWNDS-RHFCEWEGITCD 55
D AL AFKS ++ DP G L+SWN S C W G+TCD
Sbjct: 4 DRDALLAFKSSLNGDPSGALSSWNPSSSDPCSWTGVTCD 42
|
Leucine Rich Repeats pfam00560 are short sequence motifs present in a number of proteins with diverse functions and cellular locations. Leucine Rich Repeats are often flanked by cysteine rich domains. This domain is often found at the N-terminus of tandem leucine rich repeats. Length = 42 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 60.6 bits (147), Expect = 2e-09
Identities = 30/80 (37%), Positives = 46/80 (57%), Gaps = 1/80 (1%)
Query: 453 LSGTIPGDIFNISSLSVSLDLAENHFVGSIPPRIGNLKALRCFDVSNNDLSGEIPSELGL 512
L G IP DI + L S++L+ N G+IPP +G++ +L D+S N +G IP LG
Sbjct: 430 LRGFIPNDISKLRHLQ-SINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQ 488
Query: 513 CSSLEEIYLAENFFNGFIPS 532
+SL + L N +G +P+
Sbjct: 489 LTSLRILNLNGNSLSGRVPA 508
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 59.4 bits (144), Expect = 3e-09
Identities = 34/90 (37%), Positives = 54/90 (60%), Gaps = 2/90 (2%)
Query: 151 ALPMNN--LTGGIPPFLGNLTSLEVVSLAGNPFGGNIPDSLGQLKELKTLGIGGNNLSGS 208
L ++N L G IP + L L+ ++L+GN GNIP SLG + L+ L + N+ +GS
Sbjct: 422 GLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS 481
Query: 209 IPPSIYNLSFLVIFSVSENQMHGSLPPSLG 238
IP S+ L+ L I +++ N + G +P +LG
Sbjct: 482 IPESLGQLTSLRILNLNGNSLSGRVPAALG 511
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 58.3 bits (141), Expect = 8e-09
Identities = 40/122 (32%), Positives = 59/122 (48%)
Query: 471 LDLAENHFVGSIPPRIGNLKALRCFDVSNNDLSGEIPSELGLCSSLEEIYLAENFFNGFI 530
L L G IP I L+ L+ ++S N + G IP LG +SLE + L+ N FNG I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482
Query: 531 PSFFRTSRGIRKVDLSRNNFFGQIPIFLEALSLEYLNLSFNDFEGRLPTRGIFANASAIS 590
P +R ++L+ N+ G++P L L + +F D G G+ A +S
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACGPHLS 542
Query: 591 VG 592
VG
Sbjct: 543 VG 544
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 56.4 bits (136), Expect = 3e-08
Identities = 30/84 (35%), Positives = 47/84 (55%), Gaps = 2/84 (2%)
Query: 311 GFM-NSLANCSKLQVLSLGGNQFRGALPHSIANLSSQLQILVLGTNQLYGSIPSGIGNLV 369
GF+ N ++ LQ ++L GN RG +P S+ +++S L++L L N GSIP +G L
Sbjct: 432 GFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITS-LEVLDLSYNSFNGSIPESLGQLT 490
Query: 370 NLYSLQTEENQFTGSIPKEMGKLL 393
+L L N +G +P +G L
Sbjct: 491 SLRILNLNGNSLSGRVPAALGGRL 514
|
Length = 623 |
| >gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Score = 55.0 bits (132), Expect = 6e-08
Identities = 73/225 (32%), Positives = 109/225 (48%), Gaps = 13/225 (5%)
Query: 360 SIPSGIGNLVNLYSLQT---EENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLGNL 416
S G NL+NL L + N+ +I E+ +L NL LD N+ + +IP +G L
Sbjct: 81 SSLDGSENLLNLLPLPSLDLNLNRLRSNIS-ELLELTNLTSLDLDNNNIT-DIPPLIGLL 138
Query: 417 -SSLYEIFLGDNNLSGVIPSSLGNLERLAILEMFANELSGTIPGDIFNISSLSVSLDLAE 475
S+L E+ L DN + +PS L NL L L++ N+LS +P + N+S+L+ +LDL+
Sbjct: 139 KSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLN-NLDLSG 195
Query: 476 NHFVGSIPPRIGNLKALRCFDVSNNDLSGEIPSELGLCSSLEEIYLAENFFNGFIPSFFR 535
N +PP I L AL D+SNN + E+ S L +L + L+ N +P
Sbjct: 196 NKI-SDLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIG 252
Query: 536 TSRGIRKVDLSRNNFFGQIPIFLEALSLEYLNLSFNDFEGRLPTR 580
+ +DLS N I +L L+LS N LP
Sbjct: 253 NLSNLETLDLSNNQIS-SISSLGSLTNLRELDLSGNSLSNALPLI 296
|
Length = 394 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 52.1 bits (125), Expect = 6e-07
Identities = 32/91 (35%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 198 LGIGGNNLSGSIPPSIYNLSFLVIFSVSENQMHGSLPPSLGLYFPNLKLFQTNENFFSGS 257
LG+ L G IP I L L ++S N + G++PPSLG +L++ + N F+GS
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLG-SITSLEVLDLSYNSFNGS 481
Query: 258 IPISLSNASKLEYVEIASNSFFGKLSVNFGG 288
IP SL + L + + NS G++ GG
Sbjct: 482 IPESLGQLTSLRILNLNGNSLSGRVPAALGG 512
|
Length = 623 |
| >gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Score = 47.7 bits (113), Expect = 1e-05
Identities = 60/234 (25%), Positives = 103/234 (44%), Gaps = 9/234 (3%)
Query: 65 LSPQIGNLSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLT 124
S + NL L ++L N ++ I L L +L L +N++ P S L
Sbjct: 85 GSENLLNLLPLPSLDLNLNRLRSNISELL-ELTNLTSLDLDNNNITDIPPLIGLLKSNLK 143
Query: 125 VLVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTGGIPPFLGNLTSLEVVSLAGNPFGGN 184
L L +NK+ S+P +L LK L L N+L+ +P L NL++L + L+GN +
Sbjct: 144 ELDLSDNKI-ESLPSPLRNLPNLKNLDLSFNDLSD-LPKLLSNLSNLNNLDLSGNKIS-D 200
Query: 185 IPDSLGQLKELKTLGIGGNNLSGSIPPSIYNLSFLVIFSVSENQMHGSLPPSLGLYFPNL 244
+P + L L+ L + N++ + S+ NL L +S N++ P NL
Sbjct: 201 LPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKL--EDLPESIGNLSNL 257
Query: 245 KLFQTNENFFSGSIPISLSNASKLEYVEIASNSFFGKLSVNFGGMKNLSYLILE 298
+ + N S SL + + L ++++ NS L + + L L+
Sbjct: 258 ETLDLSNNQ--ISSISSLGSLTNLRELDLSGNSLSNALPLIALLLLLLELLLNL 309
|
Length = 394 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 45.6 bits (108), Expect = 7e-05
Identities = 25/63 (39%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 304 SGESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLSSQLQILVLGTNQLYGSIPS 363
SG S SL + + L+VL L N F G++P S+ L+S L+IL L N L G +P+
Sbjct: 450 SGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTS-LRILNLNGNSLSGRVPA 508
Query: 364 GIG 366
+G
Sbjct: 509 ALG 511
|
Length = 623 |
| >gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat | Back alignment and domain information |
|---|
Score = 39.4 bits (93), Expect = 2e-04
Identities = 21/60 (35%), Positives = 25/60 (41%)
Query: 98 RLETLLLSDNSLVGKIPANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPMNNL 157
L++L LS+N L L VL L N L P F L L+ L L NNL
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
|
Length = 60 |
| >gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 3e-04
Identities = 43/158 (27%), Positives = 66/158 (41%), Gaps = 22/158 (13%)
Query: 70 GNLSFLREINLMNNTIQGEIPLEFGRLRR---LETLLLSDNSLVGKIPANLSYCS----- 121
L+E++L +N + + L R L+ L L++N L G L
Sbjct: 78 TKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGL-GDRGLRLLAKGLKDLP 136
Query: 122 -RLTVLVLGNNKLVG----SIPFEFVSLYKLKQLALPMNNLTG-GIP---PFLGNLTSLE 172
L LVLG N+L G ++ + LK+L L N + GI L +LE
Sbjct: 137 PALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLE 196
Query: 173 VVSLAGNPF----GGNIPDSLGQLKELKTLGIGGNNLS 206
V+ L N + ++L LK L+ L +G NNL+
Sbjct: 197 VLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLT 234
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 5e-04
Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 6/85 (7%)
Query: 256 GSIPISLSNASKLEYVEIASNSFFGKLSVNFGGMKNLSYLILEYNNLGSGESDEMGFMNS 315
G IP +S L+ + ++ NS G + + G + +L L L YN+ +G E S
Sbjct: 432 GFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSF-NGSIPE-----S 485
Query: 316 LANCSKLQVLSLGGNQFRGALPHSI 340
L + L++L+L GN G +P ++
Sbjct: 486 LGQLTSLRILNLNGNSLSGRVPAAL 510
|
Length = 623 |
| >gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Score = 41.9 bits (98), Expect = 7e-04
Identities = 54/169 (31%), Positives = 77/169 (45%), Gaps = 14/169 (8%)
Query: 290 KNLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLSSQLQI 349
NL L L N + S S L N L+ L L N LP ++NLS+ L
Sbjct: 140 SNLKELDLSDNKIESLPSP-------LRNLPNLKNLDLSFNDLS-DLPKLLSNLSN-LNN 190
Query: 350 LVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEI 409
L L N++ +P I L L L N + + L NL GL+ N ++
Sbjct: 191 LDLSGNKI-SDLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNN-KLEDL 247
Query: 410 PSTLGNLSSLYEIFLGDNNLSGVIPSSLGNLERLAILEMFANELSGTIP 458
P ++GNLS+L + L +N +S SSLG+L L L++ N LS +P
Sbjct: 248 PESIGNLSNLETLDLSNNQIS--SISSLGSLTNLRELDLSGNSLSNALP 294
|
Length = 394 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 627 | |||
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 100.0 | |
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 100.0 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 100.0 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 100.0 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 100.0 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 100.0 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 100.0 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 99.98 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 99.97 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 99.97 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 99.91 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 99.91 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 99.9 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 99.9 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 99.81 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 99.81 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 99.76 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 99.75 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 99.75 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 99.75 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 99.72 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 99.63 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 99.43 | |
| KOG0532 | 722 | consensus Leucine-rich repeat (LRR) protein, conta | 99.24 | |
| KOG0532 | 722 | consensus Leucine-rich repeat (LRR) protein, conta | 99.23 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 99.18 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 99.16 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 99.15 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 99.13 | |
| KOG1909 | 382 | consensus Ran GTPase-activating protein [RNA proce | 99.13 | |
| KOG1909 | 382 | consensus Ran GTPase-activating protein [RNA proce | 99.11 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 99.08 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 99.07 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 99.05 | |
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 99.0 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 99.0 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 98.89 | |
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 98.89 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 98.79 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 98.76 | |
| KOG0531 | 414 | consensus Protein phosphatase 1, regulatory subuni | 98.68 | |
| KOG0531 | 414 | consensus Protein phosphatase 1, regulatory subuni | 98.62 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 98.49 | |
| KOG1859 | 1096 | consensus Leucine-rich repeat proteins [General fu | 98.43 | |
| PF08263 | 43 | LRRNT_2: Leucine rich repeat N-terminal domain; In | 98.41 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 98.37 | |
| KOG1859 | 1096 | consensus Leucine-rich repeat proteins [General fu | 98.27 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 98.25 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 98.22 | |
| COG5238 | 388 | RNA1 Ran GTPase-activating protein (RanGAP) involv | 98.21 | |
| KOG4579 | 177 | consensus Leucine-rich repeat (LRR) protein associ | 98.17 | |
| COG5238 | 388 | RNA1 Ran GTPase-activating protein (RanGAP) involv | 98.15 | |
| KOG4579 | 177 | consensus Leucine-rich repeat (LRR) protein associ | 98.11 | |
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 98.0 | |
| KOG1644 | 233 | consensus U2-associated snRNP A' protein [RNA proc | 97.94 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 97.91 | |
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 97.89 | |
| KOG4341 | 483 | consensus F-box protein containing LRR [General fu | 97.81 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 97.8 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 97.55 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 97.47 | |
| PF13306 | 129 | LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_ | 97.46 | |
| KOG4341 | 483 | consensus F-box protein containing LRR [General fu | 97.44 | |
| KOG1644 | 233 | consensus U2-associated snRNP A' protein [RNA proc | 97.38 | |
| PF13306 | 129 | LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_ | 97.25 | |
| KOG2739 | 260 | consensus Leucine-rich acidic nuclear protein [Cel | 96.94 | |
| KOG2739 | 260 | consensus Leucine-rich acidic nuclear protein [Cel | 96.79 | |
| KOG1947 | 482 | consensus Leucine rich repeat proteins, some prote | 96.4 | |
| KOG2123 | 388 | consensus Uncharacterized conserved protein [Funct | 96.37 | |
| KOG1947 | 482 | consensus Leucine rich repeat proteins, some prote | 96.3 | |
| KOG2123 | 388 | consensus Uncharacterized conserved protein [Funct | 96.19 | |
| KOG0473 | 326 | consensus Leucine-rich repeat protein [Function un | 95.53 | |
| PF00560 | 22 | LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le | 94.97 | |
| KOG4308 | 478 | consensus LRR-containing protein [Function unknown | 94.67 | |
| PF00560 | 22 | LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le | 94.53 | |
| PF13504 | 17 | LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO | 92.23 | |
| KOG4308 | 478 | consensus LRR-containing protein [Function unknown | 92.17 | |
| KOG0473 | 326 | consensus Leucine-rich repeat protein [Function un | 91.92 | |
| KOG3864 | 221 | consensus Uncharacterized conserved protein [Funct | 90.43 | |
| smart00370 | 26 | LRR Leucine-rich repeats, outliers. | 87.63 | |
| smart00369 | 26 | LRR_TYP Leucine-rich repeats, typical (most popula | 87.63 | |
| KOG3864 | 221 | consensus Uncharacterized conserved protein [Funct | 86.82 | |
| PF13516 | 24 | LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI | 84.67 | |
| smart00370 | 26 | LRR Leucine-rich repeats, outliers. | 83.72 | |
| smart00369 | 26 | LRR_TYP Leucine-rich repeats, typical (most popula | 83.72 | |
| KOG4242 | 553 | consensus Predicted myosin-I-binding protein [Cell | 81.87 |
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-69 Score=620.35 Aligned_cols=595 Identities=37% Similarity=0.580 Sum_probs=549.9
Q ss_pred hHHHHHhhhcC-CHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccccee---------ecCCCCcceecccccCCCC
Q 037951 4 FFITLLQVAAF-EEGDLAALQAFKSMISHDPQGILNSWNDSRHFCEWEGITC---------DLRSKALSGLLSPQIGNLS 73 (627)
Q Consensus 4 ~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~w~~~~~~c~~~~~~c---------~l~~~~l~~~~~~~l~~l~ 73 (627)
+++++.....+ .++|+++|.+||.++. +|...+.+|....++|.|.|+.| |++++++++.++..+..++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~w~~~~~~c~w~gv~c~~~~~v~~L~L~~~~i~~~~~~~~~~l~ 93 (968)
T PLN00113 15 MLFFLFLNFSMLHAEELELLLSFKSSIN-DPLKYLSNWNSSADVCLWQGITCNNSSRVVSIDLSGKNISGKISSAIFRLP 93 (968)
T ss_pred HHHHHHHHccCCCHHHHHHHHHHHHhCC-CCcccCCCCCCCCCCCcCcceecCCCCcEEEEEecCCCccccCChHHhCCC
Confidence 33333333344 6678999999999995 77778899988888999999999 5778889999999999999
Q ss_pred CCCEEECCCCCCcccCCcccC-CCCCCCEEeCCCCcCcccCCccccCCCCCCEEEccCccccccCCccccCCCCCCeeeC
Q 037951 74 FLREINLMNNTIQGEIPLEFG-RLRRLETLLLSDNSLVGKIPANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLAL 152 (627)
Q Consensus 74 ~L~~L~Ls~~~~~~~~~~~~~-~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l 152 (627)
+|++|++++|.+.+.+|..+. .+++|++|++++|.+++..|. +.+++|++|++++|.+.+..|..++.+++|++|++
T Consensus 94 ~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L 171 (968)
T PLN00113 94 YIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDL 171 (968)
T ss_pred CCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEEC
Confidence 999999999999988887654 899999999999999987775 56899999999999999899999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCccCCCCCccEEEeeCccccccCCccccCCCCCcEEEeecccCccC
Q 037951 153 PMNNLTGGIPPFLGNLTSLEVVSLAGNPFGGNIPDSLGQLKELKTLGIGGNNLSGSIPPSIYNLSFLVIFSVSENQMHGS 232 (627)
Q Consensus 153 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~ 232 (627)
++|.+.+.+|..++++++|++|++++|.+.+..|..+.++++|++|++++|.+.+.+|..++.+++|+.|++++|.+.+.
T Consensus 172 ~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ 251 (968)
T PLN00113 172 GGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGP 251 (968)
T ss_pred ccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhhhhcCCCCceeccCCccccccCCccccCCCCCcEeecccccccccCccCcCCCCCcCEEeccCccCCCCCCCCccc
Q 037951 233 LPPSLGLYFPNLKLFQTNENFFSGSIPISLSNASKLEYVEIASNSFFGKLSVNFGGMKNLSYLILEYNNLGSGESDEMGF 312 (627)
Q Consensus 233 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~ 312 (627)
+|..+.. +++|++|++++|.+.+.+|..+..+++|+.|++++|.+.+..|..+.++++|+.|++++|.+.+ ..
T Consensus 252 ~p~~l~~-l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~------~~ 324 (968)
T PLN00113 252 IPSSLGN-LKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTG------KI 324 (968)
T ss_pred cChhHhC-CCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCC------cC
Confidence 9988776 8999999999999999999999999999999999999999999999999999999999999887 34
Q ss_pred cccCCCCCcccEEEccCcccccccchhHHhccccccEEEeecccccccCcccccCCCCCCEEeCCCCccccccchhhcCC
Q 037951 313 MNSLANCSKLQVLSLGGNQFRGALPHSIANLSSQLQILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSIPKEMGKL 392 (627)
Q Consensus 313 ~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l 392 (627)
+..+..+++|+.|++++|.+.+..|..+.... +|+.|++++|++.+.+|..+..+++|+.|++++|.+.+..|..+..+
T Consensus 325 ~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~-~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~ 403 (968)
T PLN00113 325 PVALTSLPRLQVLQLWSNKFSGEIPKNLGKHN-NLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGAC 403 (968)
T ss_pred ChhHhcCCCCCEEECcCCCCcCcCChHHhCCC-CCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCC
Confidence 55788899999999999999999999988886 89999999999999999999999999999999999999999999999
Q ss_pred CCCcEeeccCCcccccCChhhhCCCCCCEEEccCCccccccChhhcCCCCCCEEECcCCcCcccCCccccccccCccEEE
Q 037951 393 LNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLGDNNLSGVIPSSLGNLERLAILEMFANELSGTIPGDIFNISSLSVSLD 472 (627)
Q Consensus 393 ~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~ll~~L~ 472 (627)
++|+.|++++|++++..|..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+.+.+|..+ ....+ +.|+
T Consensus 404 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L-~~L~ 481 (968)
T PLN00113 404 RSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRL-ENLD 481 (968)
T ss_pred CCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccc-eEEE
Confidence 999999999999999999999999999999999999999999888999999999999999998888755 44667 8999
Q ss_pred ccCCccccCCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEECCCCcccccCChhccCCCCCCEEECCCCcCcc
Q 037951 473 LAENHFVGSIPPRIGNLKALRCFDVSNNDLSGEIPSELGLCSSLEEIYLAENFFNGFIPSFFRTSRGIRKVDLSRNNFFG 552 (627)
Q Consensus 473 l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~ls~n~l~~ 552 (627)
+++|++.+..|..+.++++|++|++++|.+.+.+|..+..+++|++|+|++|.+++.+|..+..+++|+.||+++|.+.+
T Consensus 482 ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 561 (968)
T PLN00113 482 LSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSG 561 (968)
T ss_pred CcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhcccCc-CCeeeCcCCcccccCCCCCccCCCCccccccCCCCcccCCCCCCCCCCC
Q 037951 553 QIPIFLEALS-LEYLNLSFNDFEGRLPTRGIFANASAISVGGCNRLCGGIHELQLPKCPE 611 (627)
Q Consensus 553 ~~p~~~~~~~-L~~L~ls~n~l~~~~p~~~~~~~l~~l~~~~n~~l~~~~~~l~i~~c~~ 611 (627)
.+|..+..+. |+++++++|++.+.+|..+.+.++....+.|||.+||..+...+++|..
T Consensus 562 ~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~~~~~~~~c~~ 621 (968)
T PLN00113 562 EIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCGGDTTSGLPPCKR 621 (968)
T ss_pred cCChhHhcCcccCEEeccCCcceeeCCCcchhcccChhhhcCCccccCCccccCCCCCcc
Confidence 9999998888 9999999999999999999999999999999999998766556677753
|
|
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-59 Score=532.45 Aligned_cols=536 Identities=33% Similarity=0.507 Sum_probs=493.7
Q ss_pred CCccc--ceeecCCCCcceecccccCCCCCCCEEECCCCCCcccCCcccCCCCCCCEEeCCCCcCcccCCcccc-CCCCC
Q 037951 47 CEWEG--ITCDLRSKALSGLLSPQIGNLSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPANLS-YCSRL 123 (627)
Q Consensus 47 c~~~~--~~c~l~~~~l~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~-~l~~L 123 (627)
-.|.. ..|.+.+..+. +..+++.|+++++.+.+.++..|..+++|++|+|++|++.+.+|..+. .+++|
T Consensus 49 ~~w~~~~~~c~w~gv~c~--------~~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L 120 (968)
T PLN00113 49 SNWNSSADVCLWQGITCN--------NSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSL 120 (968)
T ss_pred CCCCCCCCCCcCcceecC--------CCCcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCC
Confidence 46742 34666554443 234799999999999999999999999999999999999988887754 99999
Q ss_pred CEEEccCccccccCCccccCCCCCCeeeCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCccCCCCCccEEEeeCc
Q 037951 124 TVLVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTGGIPPFLGNLTSLEVVSLAGNPFGGNIPDSLGQLKELKTLGIGGN 203 (627)
Q Consensus 124 ~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n 203 (627)
++|++++|++++.+|. +.+++|++|++++|.+.+.+|..++++++|++|++++|.+.+.+|..+.++++|++|++++|
T Consensus 121 ~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n 198 (968)
T PLN00113 121 RYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASN 198 (968)
T ss_pred CEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCC
Confidence 9999999999877775 56899999999999999999999999999999999999999899999999999999999999
Q ss_pred cccccCCccccCCCCCcEEEeecccCccCCChhhhhcCCCCceeccCCccccccCCccccCCCCCcEeecccccccccCc
Q 037951 204 NLSGSIPPSIYNLSFLVIFSVSENQMHGSLPPSLGLYFPNLKLFQTNENFFSGSIPISLSNASKLEYVEIASNSFFGKLS 283 (627)
Q Consensus 204 ~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 283 (627)
.+.+.+|..++.+++|+.|++++|.+.+.+|..+.. +++|++|++++|.+.+.+|..+.++++|+.|++++|.+.+..|
T Consensus 199 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~-l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p 277 (968)
T PLN00113 199 QLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGG-LTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIP 277 (968)
T ss_pred CCcCcCChHHcCcCCccEEECcCCccCCcCChhHhc-CCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCc
Confidence 999999999999999999999999999999988876 9999999999999999999999999999999999999999999
Q ss_pred cCcCCCCCcCEEeccCccCCCCCCCCccccccCCCCCcccEEEccCcccccccchhHHhccccccEEEeecccccccCcc
Q 037951 284 VNFGGMKNLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLSSQLQILVLGTNQLYGSIPS 363 (627)
Q Consensus 284 ~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 363 (627)
..+..+++|+.|++++|.+.+ .++..+..+++|+.|++++|.+.+..|..+..++ +|+.|++++|.+.+.+|.
T Consensus 278 ~~l~~l~~L~~L~Ls~n~l~~------~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~-~L~~L~L~~n~l~~~~p~ 350 (968)
T PLN00113 278 PSIFSLQKLISLDLSDNSLSG------EIPELVIQLQNLEILHLFSNNFTGKIPVALTSLP-RLQVLQLWSNKFSGEIPK 350 (968)
T ss_pred hhHhhccCcCEEECcCCeecc------CCChhHcCCCCCcEEECCCCccCCcCChhHhcCC-CCCEEECcCCCCcCcCCh
Confidence 889999999999999999876 4556778899999999999999999999998887 899999999999999999
Q ss_pred cccCCCCCCEEeCCCCccccccchhhcCCCCCcEeeccCCcccccCChhhhCCCCCCEEEccCCccccccChhhcCCCCC
Q 037951 364 GIGNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLGDNNLSGVIPSSLGNLERL 443 (627)
Q Consensus 364 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L 443 (627)
.+..+++|+.|++++|++.+..|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|.+++..|..+..+++|
T Consensus 351 ~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L 430 (968)
T PLN00113 351 NLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLV 430 (968)
T ss_pred HHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEECcCCcCcccCCccccccccCccEEEccCCccccCCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEECCC
Q 037951 444 AILEMFANELSGTIPGDIFNISSLSVSLDLAENHFVGSIPPRIGNLKALRCFDVSNNDLSGEIPSELGLCSSLEEIYLAE 523 (627)
Q Consensus 444 ~~L~l~~n~l~~~~~~~~~~~~~ll~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~ 523 (627)
+.|++++|.+.+.+|..+..++++ +.|++++|.+.+..|..+ ..++|+.|++++|++++..|..+..+++|+.|++++
T Consensus 431 ~~L~Ls~N~l~~~~~~~~~~l~~L-~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 508 (968)
T PLN00113 431 YFLDISNNNLQGRINSRKWDMPSL-QMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSE 508 (968)
T ss_pred CEEECcCCcccCccChhhccCCCC-cEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhhccCEEECcC
Confidence 999999999999999888889999 999999999998888765 458999999999999999999999999999999999
Q ss_pred CcccccCChhccCCCCCCEEECCCCcCccccchhcccCc-CCeeeCcCCcccccCCCC-CccCCCCccccccCCCCcccC
Q 037951 524 NFFNGFIPSFFRTSRGIRKVDLSRNNFFGQIPIFLEALS-LEYLNLSFNDFEGRLPTR-GIFANASAISVGGCNRLCGGI 601 (627)
Q Consensus 524 n~i~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~~~-L~~L~ls~n~l~~~~p~~-~~~~~l~~l~~~~n~~l~~~~ 601 (627)
|.+++.+|..+..+++|++|++++|.+++.+|..+..++ |+.|++++|++++.+|.. ..+.+|+.+++.+|+ +.|.+
T Consensus 509 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~-l~~~~ 587 (968)
T PLN00113 509 NKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNH-LHGSL 587 (968)
T ss_pred CcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCc-ceeeC
Confidence 999999999999999999999999999999999999888 999999999999999954 567889999999997 55666
Q ss_pred CC
Q 037951 602 HE 603 (627)
Q Consensus 602 ~~ 603 (627)
|.
T Consensus 588 p~ 589 (968)
T PLN00113 588 PS 589 (968)
T ss_pred CC
Confidence 64
|
|
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-37 Score=302.04 Aligned_cols=395 Identities=22% Similarity=0.217 Sum_probs=321.1
Q ss_pred CCcccceeecCCCCcceecccccCC--CCCCCEEECCCCCCcccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCC
Q 037951 47 CEWEGITCDLRSKALSGLLSPQIGN--LSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLT 124 (627)
Q Consensus 47 c~~~~~~c~l~~~~l~~~~~~~l~~--l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~ 124 (627)
|.-.+..-|++.+.+.......+.. ....+.||+++|++....+..|.++++|+.+++.+|.++ .+|...+...+|+
T Consensus 50 c~c~~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~ 128 (873)
T KOG4194|consen 50 CPCNTRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLE 128 (873)
T ss_pred CCCCceeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hccccccccccee
Confidence 4444444455555555432222222 135678999999999888888999999999999999988 7888777778899
Q ss_pred EEEccCccccccCCccccCCCCCCeeeCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCccCCCCCccEEEeeCcc
Q 037951 125 VLVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTGGIPPFLGNLTSLEVVSLAGNPFGGNIPDSLGQLKELKTLGIGGNN 204 (627)
Q Consensus 125 ~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~ 204 (627)
.|+|.+|.|+..-.+.+..++.||.|||+.|.++...-..|..-.++++|+|++|+|+......|..+.+|.+|.|++|+
T Consensus 129 ~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNr 208 (873)
T KOG4194|consen 129 KLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNR 208 (873)
T ss_pred EEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCc
Confidence 99999999988888889999999999999999986655667777899999999999998888889999999999999999
Q ss_pred ccccCCccccCCCCCcEEEeecccCccCCChhhhhcCCCCceeccCCccccccCCccccCCCCCcEeecccccccccCcc
Q 037951 205 LSGSIPPSIYNLSFLVIFSVSENQMHGSLPPSLGLYFPNLKLFQTNENFFSGSIPISLSNASKLEYVEIASNSFFGKLSV 284 (627)
Q Consensus 205 ~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 284 (627)
++..-+..|.++++|+.|++..|.+. .+....+..+++|+.+.+..|.+.......|..+.++++|++..|++...-..
T Consensus 209 ittLp~r~Fk~L~~L~~LdLnrN~ir-ive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g 287 (873)
T KOG4194|consen 209 ITTLPQRSFKRLPKLESLDLNRNRIR-IVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEG 287 (873)
T ss_pred ccccCHHHhhhcchhhhhhcccccee-eehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcc
Confidence 99555566777999999999999886 33344455688999999999988877777888899999999999998888788
Q ss_pred CcCCCCCcCEEeccCccCCCCCCCCccccccCCCCCcccEEEccCcccccccchhHHhccccccEEEeecccccccCccc
Q 037951 285 NFGGMKNLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLSSQLQILVLGTNQLYGSIPSG 364 (627)
Q Consensus 285 ~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 364 (627)
++-+++.|+.|++++|.|..+..+.| ..+++|+.|+++.|.++..-+..+..+. .|++|+|+.|.++.....+
T Consensus 288 ~lfgLt~L~~L~lS~NaI~rih~d~W------sftqkL~~LdLs~N~i~~l~~~sf~~L~-~Le~LnLs~Nsi~~l~e~a 360 (873)
T KOG4194|consen 288 WLFGLTSLEQLDLSYNAIQRIHIDSW------SFTQKLKELDLSSNRITRLDEGSFRVLS-QLEELNLSHNSIDHLAEGA 360 (873)
T ss_pred cccccchhhhhccchhhhheeecchh------hhcccceeEeccccccccCChhHHHHHH-HhhhhcccccchHHHHhhH
Confidence 88889999999999999888776644 3467889999999999866666676666 8999999999888777777
Q ss_pred ccCCCCCCEEeCCCCcccccc---chhhcCCCCCcEeeccCCcccccCChhhhCCCCCCEEEccCCccccccChhhcCCC
Q 037951 365 IGNLVNLYSLQTEENQFTGSI---PKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLGDNNLSGVIPSSLGNLE 441 (627)
Q Consensus 365 ~~~l~~L~~L~l~~n~~~~~~---~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~ 441 (627)
|..+.+|++||+++|.+...+ ...|.++++|++|++.+|++......+|.++++|++||+.+|.+...-+.+|..+
T Consensus 361 f~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m- 439 (873)
T KOG4194|consen 361 FVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM- 439 (873)
T ss_pred HHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-
Confidence 888899999999999887544 3457788999999999999986666788899999999999999888888888887
Q ss_pred CCCEEECcCC
Q 037951 442 RLAILEMFAN 451 (627)
Q Consensus 442 ~L~~L~l~~n 451 (627)
.|++|.+..-
T Consensus 440 ~Lk~Lv~nSs 449 (873)
T KOG4194|consen 440 ELKELVMNSS 449 (873)
T ss_pred hhhhhhhccc
Confidence 7888877653
|
|
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-38 Score=303.87 Aligned_cols=393 Identities=20% Similarity=0.190 Sum_probs=341.5
Q ss_pred CCCEEECCCCCCcccCCcccCCC--CCCCEEeCCCCcCcccCCccccCCCCCCEEEccCccccccCCccccCCCCCCeee
Q 037951 74 FLREINLMNNTIQGEIPLEFGRL--RRLETLLLSDNSLVGKIPANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLA 151 (627)
Q Consensus 74 ~L~~L~Ls~~~~~~~~~~~~~~l--~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ 151 (627)
.-+.||.+++.+....-..+..+ ..-+.|++++|++....+..|.++++|+.+.+.+|.++ .+|...+...+|+.|+
T Consensus 53 ~~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~ 131 (873)
T KOG4194|consen 53 NTRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLD 131 (873)
T ss_pred CceeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEe
Confidence 45678999988764322222222 34567999999999999999999999999999999998 7888888888899999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCccCCCCCccEEEeeCccccccCCccccCCCCCcEEEeecccCcc
Q 037951 152 LPMNNLTGGIPPFLGNLTSLEVVSLAGNPFGGNIPDSLGQLKELKTLGIGGNNLSGSIPPSIYNLSFLVIFSVSENQMHG 231 (627)
Q Consensus 152 l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~ 231 (627)
|.+|.|++.-.+.++-++.|+.|||+.|.++.+....|..-.++++|+|++|.|+..-...|..+.+|..|.++.|+++
T Consensus 132 L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrit- 210 (873)
T KOG4194|consen 132 LRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRIT- 210 (873)
T ss_pred eeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCccc-
Confidence 9999999888888999999999999999999776677888899999999999999877888999999999999999998
Q ss_pred CCChhhhhcCCCCceeccCCccccccCCccccCCCCCcEeecccccccccCccCcCCCCCcCEEeccCccCCCCCCCCcc
Q 037951 232 SLPPSLGLYFPNLKLFQTNENFFSGSIPISLSNASKLEYVEIASNSFFGKLSVNFGGMKNLSYLILEYNNLGSGESDEMG 311 (627)
Q Consensus 232 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~ 311 (627)
.+|...++.+++|+.|++..|.+.-..-..|..+++|+.+.+..|++.......|-++.+++.|+|+.|++..+..+
T Consensus 211 tLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g--- 287 (873)
T KOG4194|consen 211 TLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEG--- 287 (873)
T ss_pred ccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcc---
Confidence 78888887899999999999998765566788999999999999999988888899999999999999999886543
Q ss_pred ccccCCCCCcccEEEccCcccccccchhHHhccccccEEEeecccccccCcccccCCCCCCEEeCCCCccccccchhhcC
Q 037951 312 FMNSLANCSKLQVLSLGGNQFRGALPHSIANLSSQLQILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSIPKEMGK 391 (627)
Q Consensus 312 ~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~ 391 (627)
++-+++.|++|+++.|.|...-++.+.-.. +|+.|+|++|+++...+..|..+..|++|.++.|.++.....+|.+
T Consensus 288 ---~lfgLt~L~~L~lS~NaI~rih~d~Wsftq-kL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~ 363 (873)
T KOG4194|consen 288 ---WLFGLTSLEQLDLSYNAIQRIHIDSWSFTQ-KLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVG 363 (873)
T ss_pred ---cccccchhhhhccchhhhheeecchhhhcc-cceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHH
Confidence 677889999999999999877777666555 8999999999999888889999999999999999999888888999
Q ss_pred CCCCcEeeccCCcccccCCh---hhhCCCCCCEEEccCCccccccChhhcCCCCCCEEECcCCcCcccCCccccccccCc
Q 037951 392 LLNLQGLDFGGNHFSGEIPS---TLGNLSSLYEIFLGDNNLSGVIPSSLGNLERLAILEMFANELSGTIPGDIFNISSLS 468 (627)
Q Consensus 392 l~~L~~L~L~~n~~~~~~~~---~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~ll 468 (627)
+.+|+.|||+.|.+...+.+ .|..+++|+.|++.+|++......+|..+++|+.|++.+|.+....|..|..+ .+
T Consensus 364 lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~L- 441 (873)
T KOG4194|consen 364 LSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-EL- 441 (873)
T ss_pred hhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hh-
Confidence 99999999999998755443 57789999999999999997777889999999999999999997777777766 66
Q ss_pred cEEEccCCc
Q 037951 469 VSLDLAENH 477 (627)
Q Consensus 469 ~~L~l~~n~ 477 (627)
++|.+..-.
T Consensus 442 k~Lv~nSss 450 (873)
T KOG4194|consen 442 KELVMNSSS 450 (873)
T ss_pred hhhhhcccc
Confidence 677665433
|
|
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-40 Score=308.26 Aligned_cols=476 Identities=26% Similarity=0.349 Sum_probs=323.7
Q ss_pred CCCEEeCCCCcCcccCCccccCCCCCCEEEccCccccccCCccccCCCCCCeeeCCCCCCCCCCCCCCCCCCCCCEEECC
Q 037951 98 RLETLLLSDNSLVGKIPANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTGGIPPFLGNLTSLEVVSLA 177 (627)
Q Consensus 98 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~ 177 (627)
.++.+.+++|.+. .+-+.+.++..|.+|++.+|++. ..|.+++.+..++.++.++|++. .+|+.++.+.+|..++++
T Consensus 46 ~l~~lils~N~l~-~l~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s 122 (565)
T KOG0472|consen 46 DLQKLILSHNDLE-VLREDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCS 122 (565)
T ss_pred chhhhhhccCchh-hccHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcc
Confidence 3444444444444 23333444444444444444444 34444444444444444444444 344444444444444444
Q ss_pred CCCCCCCCCCccCCCCCccEEEeeCccccccCCccccCCCCCcEEEeecccCccCCChhhhhcCCCCceeccCCcccccc
Q 037951 178 GNPFGGNIPDSLGQLKELKTLGIGGNNLSGSIPPSIYNLSFLVIFSVSENQMHGSLPPSLGLYFPNLKLFQTNENFFSGS 257 (627)
Q Consensus 178 ~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 257 (627)
.|.+. ..++.++.+..+..++..+|+++ ..|+.+.++.++..+++.+|.+....|.... +..|++++...|.++ .
T Consensus 123 ~n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~--m~~L~~ld~~~N~L~-t 197 (565)
T KOG0472|consen 123 SNELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHIA--MKRLKHLDCNSNLLE-T 197 (565)
T ss_pred cccee-ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHHHHH--HHHHHhcccchhhhh-c
Confidence 44444 33444444555555555555554 4455555555555555555555522222222 555666666655554 6
Q ss_pred CCccccCCCCCcEeecccccccccCccCcCCCCCcCEEeccCccCCCCCCCCccccccCCCCCcccEEEccCcccccccc
Q 037951 258 IPISLSNASKLEYVEIASNSFFGKLSVNFGGMKNLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGALP 337 (627)
Q Consensus 258 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~ 337 (627)
+|..++.+.+|+.|++..|++... | .|.++..|+++++..|.+...+. +..++++++..||+..|++. +.|
T Consensus 198 lP~~lg~l~~L~~LyL~~Nki~~l-P-ef~gcs~L~Elh~g~N~i~~lpa------e~~~~L~~l~vLDLRdNklk-e~P 268 (565)
T KOG0472|consen 198 LPPELGGLESLELLYLRRNKIRFL-P-EFPGCSLLKELHVGENQIEMLPA------EHLKHLNSLLVLDLRDNKLK-EVP 268 (565)
T ss_pred CChhhcchhhhHHHHhhhcccccC-C-CCCccHHHHHHHhcccHHHhhHH------HHhcccccceeeeccccccc-cCc
Confidence 777888999999999999998644 3 68999999999999999887543 24568899999999999998 788
Q ss_pred hhHHhccccccEEEeecccccccCcccccCCCCCCEEeCCCCccccccchhhcCCC--CCcEe-------eccCCccc--
Q 037951 338 HSIANLSSQLQILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSIPKEMGKLL--NLQGL-------DFGGNHFS-- 406 (627)
Q Consensus 338 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~--~L~~L-------~L~~n~~~-- 406 (627)
+.+.-+. +|++||+++|.++ ..|..++++ .|+.|-+.+|.+...-.+.+.+-+ -|++| .++...-.
T Consensus 269 de~clLr-sL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e 345 (565)
T KOG0472|consen 269 DEICLLR-SLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTE 345 (565)
T ss_pred hHHHHhh-hhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCccccc
Confidence 8888887 7999999999998 677789998 999999999987632222111100 01111 11111110
Q ss_pred --cc-CCh---hhhCCCCCCEEEccCCccccccChhhcC--CCCCCEEECcCCcCcccCCccccccccCccEEEccCCcc
Q 037951 407 --GE-IPS---TLGNLSSLYEIFLGDNNLSGVIPSSLGN--LERLAILEMFANELSGTIPGDIFNISSLSVSLDLAENHF 478 (627)
Q Consensus 407 --~~-~~~---~~~~~~~L~~L~l~~n~~~~~~~~~l~~--l~~L~~L~l~~n~l~~~~~~~~~~~~~ll~~L~l~~n~l 478 (627)
.. .+. ......+.+.|++++-+++....+.|.. -.-....+++.|++. .+|..+..+..+...+.+++|.+
T Consensus 346 ~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~i 424 (565)
T KOG0472|consen 346 TAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKI 424 (565)
T ss_pred ccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCcc
Confidence 01 111 1233567888999998888443333432 233788999999998 89998888888866667777766
Q ss_pred ccCCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEECCCCcccccCChhccCCCCCCEEECCCCcCccccchhc
Q 037951 479 VGSIPPRIGNLKALRCFDVSNNDLSGEIPSELGLCSSLEEIYLAENFFNGFIPSFFRTSRGIRKVDLSRNNFFGQIPIFL 558 (627)
Q Consensus 479 ~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~ 558 (627)
. .+|..++.+++|+.|++++|-+. .+|..++.+..||.|+++.|++. .+|+.+..+..++.+-.++|++...-|+.+
T Consensus 425 s-fv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l 501 (565)
T KOG0472|consen 425 S-FVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGL 501 (565)
T ss_pred c-cchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHh
Confidence 4 78888999999999999999997 89999999999999999999887 688888888889998888899987777778
Q ss_pred ccCc-CCeeeCcCCcccccCCCCCccCCCCccccccCCCC
Q 037951 559 EALS-LEYLNLSFNDFEGRLPTRGIFANASAISVGGCNRL 597 (627)
Q Consensus 559 ~~~~-L~~L~ls~n~l~~~~p~~~~~~~l~~l~~~~n~~l 597 (627)
..+. |..||+.+|.+....|..+...+++.+.+.|||+-
T Consensus 502 ~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 502 KNMRNLTTLDLQNNDLQQIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred hhhhhcceeccCCCchhhCChhhccccceeEEEecCCccC
Confidence 8888 99999999999977777788999999999999964
|
|
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-40 Score=305.14 Aligned_cols=471 Identities=24% Similarity=0.339 Sum_probs=276.2
Q ss_pred ecCCCCcceecccccCCCCCCCEEECCCCCCcccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEEccCcccc
Q 037951 55 DLRSKALSGLLSPQIGNLSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLTVLVLGNNKLV 134 (627)
Q Consensus 55 ~l~~~~l~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~ 134 (627)
++++|.+... .+++.++..+.+|++.+|++. ..|.+++.+..++.++.++|++. .+|+.+..+.+|+.++.++|.+.
T Consensus 51 ils~N~l~~l-~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~ 127 (565)
T KOG0472|consen 51 ILSHNDLEVL-REDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELK 127 (565)
T ss_pred hhccCchhhc-cHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcccccee
Confidence 3444444432 234455555555566555554 45555555555555555555555 55555555555555555555555
Q ss_pred ccCCccccCCCCCCeeeCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCccCCCCCccEEEeeCccccccCCcccc
Q 037951 135 GSIPFEFVSLYKLKQLALPMNNLTGGIPPFLGNLTSLEVVSLAGNPFGGNIPDSLGQLKELKTLGIGGNNLSGSIPPSIY 214 (627)
Q Consensus 135 ~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~ 214 (627)
..++.++.+..|+.++..+|+++ ..|+++..+.+|..+++.+|.+.. .|...-+++.|++++...|.+. .+|+.++
T Consensus 128 -el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~-l~~~~i~m~~L~~ld~~~N~L~-tlP~~lg 203 (565)
T KOG0472|consen 128 -ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKA-LPENHIAMKRLKHLDCNSNLLE-TLPPELG 203 (565)
T ss_pred -ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhh-CCHHHHHHHHHHhcccchhhhh-cCChhhc
Confidence 45555555555555555555555 345555555555555555555552 2333333555555555555554 4555555
Q ss_pred CCCCCcEEEeecccCccCCChhhhhcCCCCceeccCCccccccCCccccCCCCCcEeecccccccccCccCcCCCCCcCE
Q 037951 215 NLSFLVIFSVSENQMHGSLPPSLGLYFPNLKLFQTNENFFSGSIPISLSNASKLEYVEIASNSFFGKLSVNFGGMKNLSY 294 (627)
Q Consensus 215 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 294 (627)
.+.+|+.|++..|++ . .+| .|..|..|.+++++.|.+..........++++..
T Consensus 204 ~l~~L~~LyL~~Nki-------------------------~-~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~v 256 (565)
T KOG0472|consen 204 GLESLELLYLRRNKI-------------------------R-FLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLV 256 (565)
T ss_pred chhhhHHHHhhhccc-------------------------c-cCC-CCCccHHHHHHHhcccHHHhhHHHHhccccccee
Confidence 555555555555544 3 344 5778999999999999987665566679999999
Q ss_pred EeccCccCCCCCCCCccccccCCCCCcccEEEccCcccccccchhHHhccccccEEEeecccccccCcccccC-----CC
Q 037951 295 LILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLSSQLQILVLGTNQLYGSIPSGIGN-----LV 369 (627)
Q Consensus 295 L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~-----l~ 369 (627)
||+..|+++.+ +..+.-+++|+.||+++|.++ ..|..++++ +|+.|.+.+|.+...--+.+.. ++
T Consensus 257 LDLRdNklke~-------Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl--hL~~L~leGNPlrTiRr~ii~~gT~~vLK 326 (565)
T KOG0472|consen 257 LDLRDNKLKEV-------PDEICLLRSLERLDLSNNDIS-SLPYSLGNL--HLKFLALEGNPLRTIRREIISKGTQEVLK 326 (565)
T ss_pred eeccccccccC-------chHHHHhhhhhhhcccCCccc-cCCcccccc--eeeehhhcCCchHHHHHHHHcccHHHHHH
Confidence 99999999874 456777899999999999999 778888888 6999999999875311000000 01
Q ss_pred CCCE----EeCCCCc---cc-cc----cchhhcCCCCCcEeeccCCcccccCChhhhCC--CCCCEEEccCCccccccCh
Q 037951 370 NLYS----LQTEENQ---FT-GS----IPKEMGKLLNLQGLDFGGNHFSGEIPSTLGNL--SSLYEIFLGDNNLSGVIPS 435 (627)
Q Consensus 370 ~L~~----L~l~~n~---~~-~~----~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~--~~L~~L~l~~n~~~~~~~~ 435 (627)
.|+. =-++... -+ .. .........+.+.|++++-+++.+..+.|..- .-....+++.|++. .+|.
T Consensus 327 yLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~-elPk 405 (565)
T KOG0472|consen 327 YLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLC-ELPK 405 (565)
T ss_pred HHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHh-hhhh
Confidence 1111 0000000 00 00 00112234455666666666663322233221 12556666666665 4555
Q ss_pred hhcCCCCCCEEECcCCcCcccCCccccccccCccEEEccCCccccCCCccccCCCCCCEEEccCCcccccCCccccCCCC
Q 037951 436 SLGNLERLAILEMFANELSGTIPGDIFNISSLSVSLDLAENHFVGSIPPRIGNLKALRCFDVSNNDLSGEIPSELGLCSS 515 (627)
Q Consensus 436 ~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~ll~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~ 515 (627)
.+..+..+.+.-+..+...+..|..++.++.+ ..|++++|-+. .+|..++.+..|+.||+|.|++. .+|.++-.+..
T Consensus 406 ~L~~lkelvT~l~lsnn~isfv~~~l~~l~kL-t~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~ 482 (565)
T KOG0472|consen 406 RLVELKELVTDLVLSNNKISFVPLELSQLQKL-TFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQT 482 (565)
T ss_pred hhHHHHHHHHHHHhhcCccccchHHHHhhhcc-eeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHH
Confidence 55544444433333333333556666666666 56666666655 45666666666666666666665 66666665566
Q ss_pred CCEEECCCCcccccCChhccCCCCCCEEECCCCcCccccchhcccCc-CCeeeCcCCccc
Q 037951 516 LEEIYLAENFFNGFIPSFFRTSRGIRKVDLSRNNFFGQIPIFLEALS-LEYLNLSFNDFE 574 (627)
Q Consensus 516 L~~L~L~~n~i~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~~~-L~~L~ls~n~l~ 574 (627)
++.+-.++|++....|.++.++.+|.+||+.+|.+. .+|..+++++ |++|++++|++.
T Consensus 483 lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 483 LETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred HHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence 666666666666666666666666666666666665 5666666666 666666666665
|
|
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-38 Score=322.87 Aligned_cols=484 Identities=26% Similarity=0.355 Sum_probs=340.0
Q ss_pred EECCCCCCcccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEEccCccccccCCccccCCCCCCeeeCCCCCC
Q 037951 78 INLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPMNNL 157 (627)
Q Consensus 78 L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l 157 (627)
+|.+.+.+. .+|.-+-.-..++.|+++.|-+....-+.+.+..+|+.|++++|.+. ..|..+..+.+|+.|+++.|.+
T Consensus 3 vd~s~~~l~-~ip~~i~~~~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i 80 (1081)
T KOG0618|consen 3 VDASDEQLE-LIPEQILNNEALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYI 80 (1081)
T ss_pred cccccccCc-ccchhhccHHHHHhhhccccccccCchHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhhH
Confidence 455555554 44544444444666666666554222233444555777777777666 5666667777777777777766
Q ss_pred CCCCCCCCCCCCCCCEEECCCCCCCCCCCCccCCCCCccEEEeeCccccccCCccccCCCCCcEEEeecccCccCCChhh
Q 037951 158 TGGIPPFLGNLTSLEVVSLAGNPFGGNIPDSLGQLKELKTLGIGGNNLSGSIPPSIYNLSFLVIFSVSENQMHGSLPPSL 237 (627)
Q Consensus 158 ~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~ 237 (627)
. ..|....++.+|+++.|.+|... ..|..+..+++|+.|+++.|.+. .+|..+..++.++.+.+++|.....++.
T Consensus 81 ~-~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~lg~-- 155 (1081)
T KOG0618|consen 81 R-SVPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKIQRLGQ-- 155 (1081)
T ss_pred h-hCchhhhhhhcchhheeccchhh-cCchhHHhhhcccccccchhccC-CCchhHHhhhHHHHHhhhcchhhhhhcc--
Confidence 6 45566666777777777777666 56666777777777777777766 6666666777777777766622212221
Q ss_pred hhcCCCCceeccCCccccccCCccccCCCCCcEeecccccccccCccCcCCCCCcCEEeccCccCCCCCCCCccccccCC
Q 037951 238 GLYFPNLKLFQTNENFFSGSIPISLSNASKLEYVEIASNSFFGKLSVNFGGMKNLSYLILEYNNLGSGESDEMGFMNSLA 317 (627)
Q Consensus 238 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~ 317 (627)
...+.+++..+.+.+.++..+..++. .+++++|.+. ...+..+++|+.+....|.+.....
T Consensus 156 ----~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~---~~dls~~~~l~~l~c~rn~ls~l~~---------- 216 (1081)
T KOG0618|consen 156 ----TSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME---VLDLSNLANLEVLHCERNQLSELEI---------- 216 (1081)
T ss_pred ----ccchhhhhhhhhcccchhcchhhhhe--eeecccchhh---hhhhhhccchhhhhhhhcccceEEe----------
Confidence 12666777777777777666666665 6888888775 2235667788888888877765322
Q ss_pred CCCcccEEEccCcccccccchhHHhccccccEEEeecccccccCcccccCCCCCCEEeCCCCccccccchhhcCCCCCcE
Q 037951 318 NCSKLQVLSLGGNQFRGALPHSIANLSSQLQILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSIPKEMGKLLNLQG 397 (627)
Q Consensus 318 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~ 397 (627)
.-++++.|+.+.|.++...+. ..+.++++++++.|+++ .+|.+++.+.+|+.++..+|.++ .+|..+...++|+.
T Consensus 217 ~g~~l~~L~a~~n~l~~~~~~---p~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~ 291 (1081)
T KOG0618|consen 217 SGPSLTALYADHNPLTTLDVH---PVPLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVS 291 (1081)
T ss_pred cCcchheeeeccCcceeeccc---cccccceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHH
Confidence 237788888888888733222 22347999999999988 56688999999999999999986 77878888889999
Q ss_pred eeccCCcccccCChhhhCCCCCCEEEccCCccccccChh-hcCCCC-CCEEECcCCcCcccCCccc-cccccCccEEEcc
Q 037951 398 LDFGGNHFSGEIPSTLGNLSSLYEIFLGDNNLSGVIPSS-LGNLER-LAILEMFANELSGTIPGDI-FNISSLSVSLDLA 474 (627)
Q Consensus 398 L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~-l~~l~~-L~~L~l~~n~l~~~~~~~~-~~~~~ll~~L~l~ 474 (627)
|.+..|.+. .+|...+...+|++|++..|++. ..|+. +.-... |..|+.+.|.+. ..|..- .....+ +.|.+.
T Consensus 292 l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~-~lp~~~e~~~~~L-q~Lyla 367 (1081)
T KOG0618|consen 292 LSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLS-TLPSYEENNHAAL-QELYLA 367 (1081)
T ss_pred HHhhhhhhh-hCCCcccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhcccc-ccccccchhhHHH-HHHHHh
Confidence 999999988 56666777899999999999988 44443 333333 777888888777 444322 233444 788899
Q ss_pred CCccccCCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEECCCCcccccCChhccCCCCCCEEECCCCcCcccc
Q 037951 475 ENHFVGSIPPRIGNLKALRCFDVSNNDLSGEIPSELGLCSSLEEIYLAENFFNGFIPSFFRTSRGIRKVDLSRNNFFGQI 554 (627)
Q Consensus 475 ~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~ls~n~l~~~~ 554 (627)
+|+++...-..+.+..+|+.|+|++|++.......+.++..|+.|+||||+++ .+|..+..+..|++|...+|.+. ..
T Consensus 368 nN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~f 445 (1081)
T KOG0618|consen 368 NNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SF 445 (1081)
T ss_pred cCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ec
Confidence 99998766666788889999999999987333445788899999999999988 46788888899999988888888 78
Q ss_pred chhcccCcCCeeeCcCCcccccCCCCCcc-CCCCccccccCCCCc
Q 037951 555 PIFLEALSLEYLNLSFNDFEGRLPTRGIF-ANASAISVGGCNRLC 598 (627)
Q Consensus 555 p~~~~~~~L~~L~ls~n~l~~~~p~~~~~-~~l~~l~~~~n~~l~ 598 (627)
|.......|+.+|+|.|.++...-....+ ++|++++++||+++.
T Consensus 446 Pe~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l~ 490 (1081)
T KOG0618|consen 446 PELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTRLV 490 (1081)
T ss_pred hhhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCcccc
Confidence 84444444999999999987665444555 889999999998653
|
|
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.6e-35 Score=302.09 Aligned_cols=464 Identities=25% Similarity=0.306 Sum_probs=213.0
Q ss_pred CCCCCEEECCCCCCcccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEEccCccccccCCccccCCCCCCeee
Q 037951 72 LSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLA 151 (627)
Q Consensus 72 l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ 151 (627)
...+..|+++.|-+-...-+.+.+..+|+.|++++|.+. ..|..+..+++|+.|.++.|.+. ..|.+...+.+|+++.
T Consensus 20 ~~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~ln 97 (1081)
T KOG0618|consen 20 NEALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLN 97 (1081)
T ss_pred HHHHHhhhccccccccCchHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhhe
Confidence 334555555555443211122333444566666655555 45555555556666666665555 4555555555666666
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCccCCCCCccEEEeeCccccccCCccccCCCCCcEEEeecccCcc
Q 037951 152 LPMNNLTGGIPPFLGNLTSLEVVSLAGNPFGGNIPDSLGQLKELKTLGIGGNNLSGSIPPSIYNLSFLVIFSVSENQMHG 231 (627)
Q Consensus 152 l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~ 231 (627)
|..|.+. ..|..+..+++|++|+++.|.+. .+|..+..+..+..+..++|..... ++... ++.+++..|.+.+
T Consensus 98 L~~n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~----lg~~~-ik~~~l~~n~l~~ 170 (1081)
T KOG0618|consen 98 LKNNRLQ-SLPASISELKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKIQR----LGQTS-IKKLDLRLNVLGG 170 (1081)
T ss_pred eccchhh-cCchhHHhhhcccccccchhccC-CCchhHHhhhHHHHHhhhcchhhhh----hcccc-chhhhhhhhhccc
Confidence 6555555 45555555666666666666555 4455555555555555555511111 11111 4444444444444
Q ss_pred CCChhhhhcCCCCceeccCCccccccCCccccCCCCCcEeecccccccccCccCcCCCCCcCEEeccCccCCCCCCCCcc
Q 037951 232 SLPPSLGLYFPNLKLFQTNENFFSGSIPISLSNASKLEYVEIASNSFFGKLSVNFGGMKNLSYLILEYNNLGSGESDEMG 311 (627)
Q Consensus 232 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~ 311 (627)
.++..... +.. .+++++|.+. ...+..+.+|+.+....|++..... .-++++.|+.++|.++....
T Consensus 171 ~~~~~i~~-l~~--~ldLr~N~~~---~~dls~~~~l~~l~c~rn~ls~l~~----~g~~l~~L~a~~n~l~~~~~---- 236 (1081)
T KOG0618|consen 171 SFLIDIYN-LTH--QLDLRYNEME---VLDLSNLANLEVLHCERNQLSELEI----SGPSLTALYADHNPLTTLDV---- 236 (1081)
T ss_pred chhcchhh-hhe--eeecccchhh---hhhhhhccchhhhhhhhcccceEEe----cCcchheeeeccCcceeecc----
Confidence 44433322 111 3555555443 1123344445555444444332211 12445555555554443111
Q ss_pred ccccCCCCCcccEEEccCcccccccchhHHhccccccEEEeecccccccCcccccCCCCCCEEeCCCCccccccchhhcC
Q 037951 312 FMNSLANCSKLQVLSLGGNQFRGALPHSIANLSSQLQILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSIPKEMGK 391 (627)
Q Consensus 312 ~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~ 391 (627)
-....+|+.+++++|+++ .+|+++..+. +|+.++..+|.++ .+|..+...++|+.|.+..|.+. .+|....+
T Consensus 237 ----~p~p~nl~~~dis~n~l~-~lp~wi~~~~-nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~ 308 (1081)
T KOG0618|consen 237 ----HPVPLNLQYLDISHNNLS-NLPEWIGACA-NLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEG 308 (1081)
T ss_pred ----ccccccceeeecchhhhh-cchHHHHhcc-cceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccc
Confidence 111234555555555555 3445544444 5555555555553 44444444555555555555554 33444444
Q ss_pred CCCCcEeeccCCcccccCChhh-hCCC-CCCEEEccCCccccccCh-hhcCCCCCCEEECcCCcCcccCCccccccccCc
Q 037951 392 LLNLQGLDFGGNHFSGEIPSTL-GNLS-SLYEIFLGDNNLSGVIPS-SLGNLERLAILEMFANELSGTIPGDIFNISSLS 468 (627)
Q Consensus 392 l~~L~~L~L~~n~~~~~~~~~~-~~~~-~L~~L~l~~n~~~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~ll 468 (627)
.++|+.|+|..|.+. .+|..+ .... +++.|+.+.|++.. .|. .=..+..|+.|++.+|.+.+..-.-+.+...+
T Consensus 309 ~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~-lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hL- 385 (1081)
T KOG0618|consen 309 LKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLST-LPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHL- 385 (1081)
T ss_pred cceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhccccc-cccccchhhHHHHHHHHhcCcccccchhhhccccce-
Confidence 555555555555554 223222 1111 13444444444431 111 01122334444555554444333334444444
Q ss_pred cEEEccCCccccCCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEECCCCcccccCChhccCCCCCCEEECCCC
Q 037951 469 VSLDLAENHFVGSIPPRIGNLKALRCFDVSNNDLSGEIPSELGLCSSLEEIYLAENFFNGFIPSFFRTSRGIRKVDLSRN 548 (627)
Q Consensus 469 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~ls~n 548 (627)
+.|++++|++.......+.++..|++|+||+|+++ .+|.++..++.|++|...+|.+.. .| .+..+++|+.+|+|.|
T Consensus 386 KVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~~-fP-e~~~l~qL~~lDlS~N 462 (1081)
T KOG0618|consen 386 KVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLLS-FP-ELAQLPQLKVLDLSCN 462 (1081)
T ss_pred eeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCceee-ch-hhhhcCcceEEecccc
Confidence 45555555444333333445555555555555554 444555555555555555555542 23 3444555555555555
Q ss_pred cCccc-cchhcccCcCCeeeCcCCc
Q 037951 549 NFFGQ-IPIFLEALSLEYLNLSFND 572 (627)
Q Consensus 549 ~l~~~-~p~~~~~~~L~~L~ls~n~ 572 (627)
.+... +|......+|++||+++|.
T Consensus 463 ~L~~~~l~~~~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 463 NLSEVTLPEALPSPNLKYLDLSGNT 487 (1081)
T ss_pred hhhhhhhhhhCCCcccceeeccCCc
Confidence 55432 2222221225555555554
|
|
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3e-34 Score=281.64 Aligned_cols=365 Identities=25% Similarity=0.408 Sum_probs=221.8
Q ss_pred CCCCCCCEEECCCCCCc-ccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEEccCccccccCCccccCCCCCC
Q 037951 70 GNLSFLREINLMNNTIQ-GEIPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLK 148 (627)
Q Consensus 70 ~~l~~L~~L~Ls~~~~~-~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~ 148 (627)
+-++.+|-+|+++|.++ +..|.....+++++.|.|...++. .+|+.++.+.+|++|.+++|++. .+-..+..++.||
T Consensus 4 gVLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LR 81 (1255)
T KOG0444|consen 4 GVLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLR 81 (1255)
T ss_pred cccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhH
Confidence 34567888999999998 468888899999999999999888 88999999999999999999987 5566788889999
Q ss_pred eeeCCCCCCCC-CCCCCCCCCCCCCEEECCCCCCCCCCCCccCCCCCccEEEeeCccccccCCc-cccCCCCCcEEEeec
Q 037951 149 QLALPMNNLTG-GIPPFLGNLTSLEVVSLAGNPFGGNIPDSLGQLKELKTLGIGGNNLSGSIPP-SIYNLSFLVIFSVSE 226 (627)
Q Consensus 149 ~L~l~~n~l~~-~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~-~l~~l~~L~~L~l~~ 226 (627)
.+.+.+|.+.. .+|..+..+..|..|||++|++. ..|..+...+++-.|+|++|+|. .+|. .+.+++.|-.||++.
T Consensus 82 sv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~ 159 (1255)
T KOG0444|consen 82 SVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSN 159 (1255)
T ss_pred HHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhcccc
Confidence 99999998853 67788888899999999999888 67888888888888888888887 4443 344677777777777
Q ss_pred ccCccCCChhhhhcCCCCceeccCCccccccCCccccCCCCCcEeeccccccc-ccCccCcCCCCCcCEEeccCccCCCC
Q 037951 227 NQMHGSLPPSLGLYFPNLKLFQTNENFFSGSIPISLSNASKLEYVEIASNSFF-GKLSVNFGGMKNLSYLILEYNNLGSG 305 (627)
Q Consensus 227 n~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~~~~~l~~l~~L~~L~l~~n~l~~~ 305 (627)
|++. .+|+.+.. +..|++|.+++|.+....-..+..+++|+.|.+++.+-+ ..+|..+..+.+|+.++++.|++..
T Consensus 160 NrLe-~LPPQ~RR-L~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~- 236 (1255)
T KOG0444|consen 160 NRLE-MLPPQIRR-LSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPI- 236 (1255)
T ss_pred chhh-hcCHHHHH-HhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCc-
Confidence 7775 45554443 555555555555444322223334444555555444322 2234444444455555555544443
Q ss_pred CCCCccccccCCCCCcccEEEccCcccccccchhHHhccccccEEEeecccccccCcccccCCCCCCEEeCCCCccc-cc
Q 037951 306 ESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLSSQLQILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFT-GS 384 (627)
Q Consensus 306 ~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~-~~ 384 (627)
++..+-++++|+.|++++|+++ .+......+. +|++|+++.|+++ .+|.+++.+++|+.|+..+|+++ .-
T Consensus 237 ------vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~-~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeG 307 (1255)
T KOG0444|consen 237 ------VPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWE-NLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEG 307 (1255)
T ss_pred ------chHHHhhhhhhheeccCcCcee-eeeccHHHHh-hhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccC
Confidence 2233444444444444444444 2222222222 4444444444444 44444444444444444444433 12
Q ss_pred cchhhcCCCCCcEeeccCCcccccCChhhhCCCCCCEEEccCCccccccChhhcCCCCCCEEECcCCc
Q 037951 385 IPKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLGDNNLSGVIPSSLGNLERLAILEMFANE 452 (627)
Q Consensus 385 ~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~ 452 (627)
+|..++.+.+|+.+..++|.+. ..|+.++.|..|+.|.++.|.+. .+|+++.-++.|+.|++..|.
T Consensus 308 iPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNp 373 (1255)
T KOG0444|consen 308 IPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENP 373 (1255)
T ss_pred CccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCc
Confidence 3444444444444444444443 44444444444444444444443 334444444444444444443
|
|
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-32 Score=270.22 Aligned_cols=366 Identities=26% Similarity=0.402 Sum_probs=225.2
Q ss_pred CCCCCEEECCCCCCC-CCCCCccCCCCCccEEEeeCccccccCCccccCCCCCcEEEeecccCccCCChhhhhcCCCCce
Q 037951 168 LTSLEVVSLAGNPFG-GNIPDSLGQLKELKTLGIGGNNLSGSIPPSIYNLSFLVIFSVSENQMHGSLPPSLGLYFPNLKL 246 (627)
Q Consensus 168 l~~L~~L~L~~n~~~-~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~ 246 (627)
++-.+-.|+++|.++ +..|.....+++++.|.|....+. .+|+.++.+.+|++|.++.|++. .+-..+.. +|.|+.
T Consensus 6 LpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~-Lp~LRs 82 (1255)
T KOG0444|consen 6 LPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELSD-LPRLRS 82 (1255)
T ss_pred cceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhcc-chhhHH
Confidence 334456778888887 466777777888888888887777 67888888888888888887776 22222222 666777
Q ss_pred eccCCccccc-cCCccccCCCCCcEeecccccccccCccCcCCCCCcCEEeccCccCCCCCCCCccccccCCCCCcccEE
Q 037951 247 FQTNENFFSG-SIPISLSNASKLEYVEIASNSFFGKLSVNFGGMKNLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVL 325 (627)
Q Consensus 247 L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L 325 (627)
+.+..|.+.. .+|..+..+..|+.||+++|++. .+|..+...+++-.|++++|+|..++.. .+.++..|-.|
T Consensus 83 v~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~------lfinLtDLLfL 155 (1255)
T KOG0444|consen 83 VIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNS------LFINLTDLLFL 155 (1255)
T ss_pred HhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCch------HHHhhHhHhhh
Confidence 7777666542 45556666666667777766653 3444555666666666666666654432 34455566666
Q ss_pred EccCcccccccchhHHhccccccEEEeecccccccCcccccCCCCCCEEeCCCCccc-cccchhhcCCCCCcEeeccCCc
Q 037951 326 SLGGNQFRGALPHSIANLSSQLQILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFT-GSIPKEMGKLLNLQGLDFGGNH 404 (627)
Q Consensus 326 ~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~ 404 (627)
++++|++. .+|..+..+. .|++|++++|.+.-.--..+..+++|+.|.+++.+-+ .-+|.++..+.+|..+|++.|.
T Consensus 156 DLS~NrLe-~LPPQ~RRL~-~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~ 233 (1255)
T KOG0444|consen 156 DLSNNRLE-MLPPQIRRLS-MLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENN 233 (1255)
T ss_pred ccccchhh-hcCHHHHHHh-hhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccC
Confidence 66666665 5555555554 5666666666654322233444555666666655322 3455566666666666666666
Q ss_pred ccccCChhhhCCCCCCEEEccCCccccccChhhcCCCCCCEEECcCCcCcccCCccccccccCccEEEccCCcccc-CCC
Q 037951 405 FSGEIPSTLGNLSSLYEIFLGDNNLSGVIPSSLGNLERLAILEMFANELSGTIPGDIFNISSLSVSLDLAENHFVG-SIP 483 (627)
Q Consensus 405 ~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~ll~~L~l~~n~l~~-~~~ 483 (627)
+. ..|+.+.++++|+.|++++|+++ .+........+|++|+++.|++. .+|..++.++.+ +.|.+.+|+++- -+|
T Consensus 234 Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL-~kLy~n~NkL~FeGiP 309 (1255)
T KOG0444|consen 234 LP-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKL-TKLYANNNKLTFEGIP 309 (1255)
T ss_pred CC-cchHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhhhHHH-HHHHhccCcccccCCc
Confidence 65 55666666666666666666665 33333444555666666666666 666666666666 566666665532 345
Q ss_pred ccccCCCCCCEEEccCCcccccCCccccCCCCCCEEECCCCcccccCChhccCCCCCCEEECCCCcCc
Q 037951 484 PRIGNLKALRCFDVSNNDLSGEIPSELGLCSSLEEIYLAENFFNGFIPSFFRTSRGIRKVDLSRNNFF 551 (627)
Q Consensus 484 ~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~ls~n~l~ 551 (627)
..++.+.+|+.+..++|.+. ..|+.+..|..|+.|.|++|.+. .+|+++.-++.|+.||+..|+-.
T Consensus 310 SGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnL 375 (1255)
T KOG0444|consen 310 SGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNL 375 (1255)
T ss_pred cchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCc
Confidence 55666666666666666665 56666666666666666666655 35666666666666666666555
|
|
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.4e-22 Score=232.99 Aligned_cols=346 Identities=21% Similarity=0.217 Sum_probs=199.6
Q ss_pred CcccCCCCCCCEEeCCCCc------CcccCCccccCCC-CCCEEEccCccccccCCccccCCCCCCeeeCCCCCCCCCCC
Q 037951 90 PLEFGRLRRLETLLLSDNS------LVGKIPANLSYCS-RLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTGGIP 162 (627)
Q Consensus 90 ~~~~~~l~~L~~L~L~~n~------i~~~~~~~~~~l~-~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~ 162 (627)
+.+|.++++|+.|.+..+. +...+|..+..++ +|+.|++.++.+. .+|..+ ...+|++|++.++.+. .++
T Consensus 551 ~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~ 627 (1153)
T PLN03210 551 ENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLW 627 (1153)
T ss_pred HHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-ccc
Confidence 4557777888888775543 2234566666654 5788888777776 566665 4577888888887776 466
Q ss_pred CCCCCCCCCCEEECCCCCCCCCCCCccCCCCCccEEEeeCccccccCCccccCCCCCcEEEeecccCccCCChhhhhcCC
Q 037951 163 PFLGNLTSLEVVSLAGNPFGGNIPDSLGQLKELKTLGIGGNNLSGSIPPSIYNLSFLVIFSVSENQMHGSLPPSLGLYFP 242 (627)
Q Consensus 163 ~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~ 242 (627)
..+..+++|+.|+++++.....+| .+..+++|++|++++|.....+|..+..+++|+.|++++|.....+|... .++
T Consensus 628 ~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i--~l~ 704 (1153)
T PLN03210 628 DGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI--NLK 704 (1153)
T ss_pred cccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC--CCC
Confidence 667777888888887765443454 36677788888887776655777777777888888887765555666544 366
Q ss_pred CCceeccCCccccccCCccccCCCCCcEeecccccccccCccCcCCCCCcCEEeccCccCCCCCCCCccc-cccCCCCCc
Q 037951 243 NLKLFQTNENFFSGSIPISLSNASKLEYVEIASNSFFGKLSVNFGGMKNLSYLILEYNNLGSGESDEMGF-MNSLANCSK 321 (627)
Q Consensus 243 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~-~~~l~~~~~ 321 (627)
+|+.|++++|...+.+|.. .++|+.|+++++.+.. .|..+ .+++|++|.+.++............ ......+++
T Consensus 705 sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~~-lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~s 779 (1153)
T PLN03210 705 SLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIEE-FPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPS 779 (1153)
T ss_pred CCCEEeCCCCCCccccccc---cCCcCeeecCCCcccc-ccccc-cccccccccccccchhhccccccccchhhhhcccc
Confidence 7777777776544444432 3567777777776543 33322 4566776666654322111000000 001112345
Q ss_pred ccEEEccCcccccccchhHHhccccccEEEeecccccccCcccccCCCCCCEEeCCCCccccccchhhcCCCCCcEeecc
Q 037951 322 LQVLSLGGNQFRGALPHSIANLSSQLQILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFG 401 (627)
Q Consensus 322 L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~ 401 (627)
|+.|++++|.....+|..+..+. +|+.|++++|...+.+|..+ ++++|+.|++++|.....+|.. .++|+.|+++
T Consensus 780 L~~L~Ls~n~~l~~lP~si~~L~-~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls 854 (1153)
T PLN03210 780 LTRLFLSDIPSLVELPSSIQNLH-KLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLNLS 854 (1153)
T ss_pred chheeCCCCCCccccChhhhCCC-CCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---ccccCEeECC
Confidence 56666666555545555555554 56666665554333444433 4555555665555433233321 2455555555
Q ss_pred CCcccccCChhhhCCCCCCEEEccCCccccccChhhcCCCCCCEEECcCCc
Q 037951 402 GNHFSGEIPSTLGNLSSLYEIFLGDNNLSGVIPSSLGNLERLAILEMFANE 452 (627)
Q Consensus 402 ~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~ 452 (627)
+|.+. .+|..+..+++|+.|++++|+-...+|..+..+++|+.+++++|.
T Consensus 855 ~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 855 RTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred CCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence 55555 445555555555555555544333444445555555555555553
|
syringae 6; Provisional |
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.9e-23 Score=237.61 Aligned_cols=341 Identities=21% Similarity=0.208 Sum_probs=271.7
Q ss_pred ccccCCCCCCCEEECCCCC------CcccCCcccCCCC-CCCEEeCCCCcCcccCCccccCCCCCCEEEccCccccccCC
Q 037951 66 SPQIGNLSFLREINLMNNT------IQGEIPLEFGRLR-RLETLLLSDNSLVGKIPANLSYCSRLTVLVLGNNKLVGSIP 138 (627)
Q Consensus 66 ~~~l~~l~~L~~L~Ls~~~------~~~~~~~~~~~l~-~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~ 138 (627)
+..|..+++|++|.+..+. +...+|..|..++ +|+.|++.++.+. .+|..| ...+|++|++++|++. .++
T Consensus 551 ~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~ 627 (1153)
T PLN03210 551 ENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLW 627 (1153)
T ss_pred HHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-ccc
Confidence 4568899999999997653 2334677777764 6999999999887 778777 5789999999999988 678
Q ss_pred ccccCCCCCCeeeCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCccCCCCCccEEEeeCccccccCCccccCCCC
Q 037951 139 FEFVSLYKLKQLALPMNNLTGGIPPFLGNLTSLEVVSLAGNPFGGNIPDSLGQLKELKTLGIGGNNLSGSIPPSIYNLSF 218 (627)
Q Consensus 139 ~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~ 218 (627)
..+..+++|+.|+++++.....+|. ++.+++|++|++++|.....+|..+.++++|+.|++++|..-..+|..+ ++++
T Consensus 628 ~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~s 705 (1153)
T PLN03210 628 DGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKS 705 (1153)
T ss_pred cccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCC
Confidence 8889999999999999875556664 8889999999999987766889999999999999999986655777765 7899
Q ss_pred CcEEEeecccCccCCChhhhhcCCCCceeccCCccccccCCccccCCCCCcEeeccccccc-------ccCccCcCCCCC
Q 037951 219 LVIFSVSENQMHGSLPPSLGLYFPNLKLFQTNENFFSGSIPISLSNASKLEYVEIASNSFF-------GKLSVNFGGMKN 291 (627)
Q Consensus 219 L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-------~~~~~~l~~l~~ 291 (627)
|+.|++++|.....+|.. ..+|++|+++++.+. .+|..+ .+++|++|.+.++... ...+......++
T Consensus 706 L~~L~Lsgc~~L~~~p~~----~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~s 779 (1153)
T PLN03210 706 LYRLNLSGCSRLKSFPDI----STNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPS 779 (1153)
T ss_pred CCEEeCCCCCCccccccc----cCCcCeeecCCCccc-cccccc-cccccccccccccchhhccccccccchhhhhcccc
Confidence 999999999766666643 578999999999876 455544 5788888888764321 112222334578
Q ss_pred cCEEeccCccCCCCCCCCccccccCCCCCcccEEEccCcccccccchhHHhccccccEEEeecccccccCcccccCCCCC
Q 037951 292 LSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLSSQLQILVLGTNQLYGSIPSGIGNLVNL 371 (627)
Q Consensus 292 L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L 371 (627)
|+.|++++|.... .++..+.++++|+.|++++|...+.+|... .+. +|+.|++++|.....+|.. .++|
T Consensus 780 L~~L~Ls~n~~l~------~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~-sL~~L~Ls~c~~L~~~p~~---~~nL 848 (1153)
T PLN03210 780 LTRLFLSDIPSLV------ELPSSIQNLHKLEHLEIENCINLETLPTGI-NLE-SLESLDLSGCSRLRTFPDI---STNI 848 (1153)
T ss_pred chheeCCCCCCcc------ccChhhhCCCCCCEEECCCCCCcCeeCCCC-Ccc-ccCEEECCCCCcccccccc---cccc
Confidence 9999999986544 456678899999999999987655777665 344 8999999998665555543 4689
Q ss_pred CEEeCCCCccccccchhhcCCCCCcEeeccCCcccccCChhhhCCCCCCEEEccCCcc
Q 037951 372 YSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLGDNNL 429 (627)
Q Consensus 372 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~ 429 (627)
+.|++++|.++ .+|..+..+++|+.|++++|.-...+|.....+++|+.+++++|.-
T Consensus 849 ~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~ 905 (1153)
T PLN03210 849 SDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGA 905 (1153)
T ss_pred CEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcc
Confidence 99999999998 6788899999999999999765556777788899999999999973
|
syringae 6; Provisional |
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.1e-26 Score=214.16 Aligned_cols=446 Identities=21% Similarity=0.176 Sum_probs=255.3
Q ss_pred ceeecCCCCcceecccccCCCCCCCEEECCCCCCcccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEEccC-
Q 037951 52 ITCDLRSKALSGLLSPQIGNLSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLTVLVLGN- 130 (627)
Q Consensus 52 ~~c~l~~~~l~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ls~- 130 (627)
...|+++.+++.+ |..+. .....++|..|+|+...+.+|..+++||.|||++|+|+.+-|++|.++++|..|.+-+
T Consensus 49 ~~VdCr~~GL~eV-P~~LP--~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~ 125 (498)
T KOG4237|consen 49 GIVDCRGKGLTEV-PANLP--PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGN 125 (498)
T ss_pred ceEEccCCCcccC-cccCC--CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcC
Confidence 4446677776654 32222 3567899999999987888999999999999999999999999999999988887766
Q ss_pred ccccccCCccccCCCCCCeeeCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCccCCCCCccEEEeeCccccccCC
Q 037951 131 NKLVGSIPFEFVSLYKLKQLALPMNNLTGGIPPFLGNLTSLEVVSLAGNPFGGNIPDSLGQLKELKTLGIGGNNLSGSIP 210 (627)
Q Consensus 131 n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~ 210 (627)
|+|+......|+++..|+.|.+.-|++.....+.|..+++|..|.+.+|.+..+-...|..+..++++.+..|.+..
T Consensus 126 NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~ic--- 202 (498)
T KOG4237|consen 126 NKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFIC--- 202 (498)
T ss_pred CchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCcccc---
Confidence 89997777889999999999999999998888889999999999999999984444488999999999998887431
Q ss_pred ccccCCCCCcEEEeecccCccCCChhhhhcCCCCceeccCCccccccCCccccCC-CCCcEeecccccccccCc-cCcCC
Q 037951 211 PSIYNLSFLVIFSVSENQMHGSLPPSLGLYFPNLKLFQTNENFFSGSIPISLSNA-SKLEYVEIASNSFFGKLS-VNFGG 288 (627)
Q Consensus 211 ~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~~~~-~~l~~ 288 (627)
..+++.+..........++ + ..-.....+.+..+...-+..+... ..+..--.+.+......| ..|++
T Consensus 203 --dCnL~wla~~~a~~~iets-----g---arc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~ 272 (498)
T KOG4237|consen 203 --DCNLPWLADDLAMNPIETS-----G---ARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKK 272 (498)
T ss_pred --ccccchhhhHHhhchhhcc-----c---ceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhh
Confidence 2233332221110000000 0 0000011111111110001111000 011100111111112222 23677
Q ss_pred CCCcCEEeccCccCCCCCCCCccccccCCCCCcccEEEccCcccccccchhHHhccccccEEEeecccccccCcccccCC
Q 037951 289 MKNLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLSSQLQILVLGTNQLYGSIPSGIGNL 368 (627)
Q Consensus 289 l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l 368 (627)
+++|++|++++|.++.+... +|.+...+++|++..|++...-..+|.++. .|+.|++.+|+++...|.+|..+
T Consensus 273 L~~L~~lnlsnN~i~~i~~~------aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls-~L~tL~L~~N~it~~~~~aF~~~ 345 (498)
T KOG4237|consen 273 LPNLRKLNLSNNKITRIEDG------AFEGAAELQELYLTRNKLEFVSSGMFQGLS-GLKTLSLYDNQITTVAPGAFQTL 345 (498)
T ss_pred cccceEeccCCCccchhhhh------hhcchhhhhhhhcCcchHHHHHHHhhhccc-cceeeeecCCeeEEEeccccccc
Confidence 77777777777777765543 566667777777777777655455555554 67777777777776677777777
Q ss_pred CCCCEEeCCCCcccccc-chhhcCCCCCcEeeccCCcccccCChhhhCCCCCCEEEccCCccccccChhhcCCCCCCEEE
Q 037951 369 VNLYSLQTEENQFTGSI-PKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLGDNNLSGVIPSSLGNLERLAILE 447 (627)
Q Consensus 369 ~~L~~L~l~~n~~~~~~-~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~ 447 (627)
.+|.+|.+-.|.+.-.- -.+++.+ +......+ .|. -++...++.+.+++..+...--+ .=+++
T Consensus 346 ~~l~~l~l~~Np~~CnC~l~wl~~W-------lr~~~~~~-~~~-Cq~p~~~~~~~~~dv~~~~~~c~------~~ee~- 409 (498)
T KOG4237|consen 346 FSLSTLNLLSNPFNCNCRLAWLGEW-------LRKKSVVG-NPR-CQSPGFVRQIPISDVAFGDFRCG------GPEEL- 409 (498)
T ss_pred ceeeeeehccCcccCccchHHHHHH-------HhhCCCCC-CCC-CCCCchhccccchhccccccccC------Ccccc-
Confidence 77777777666554110 0111111 11122111 111 12233556666666554321100 00000
Q ss_pred CcCCcCcccCCccccccccCccEEEccCCccccCCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEECCCCccc
Q 037951 448 MFANELSGTIPGDIFNISSLSVSLDLAENHFVGSIPPRIGNLKALRCFDVSNNDLSGEIPSELGLCSSLEEIYLAENFFN 527 (627)
Q Consensus 448 l~~n~l~~~~~~~~~~~~~ll~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~i~ 527 (627)
+|.-.+.-|. .++-+-+....++..+ ..+|..+. ...++|.+.+|.++ .+|.. .+.+| .+++++|+++
T Consensus 410 --~~~~s~~cP~---~c~c~~tVvRcSnk~l-k~lp~~iP--~d~telyl~gn~~~-~vp~~--~~~~l-~~dls~n~i~ 477 (498)
T KOG4237|consen 410 --GCLTSSPCPP---PCTCLDTVVRCSNKLL-KLLPRGIP--VDVTELYLDGNAIT-SVPDE--LLRSL-LLDLSNNRIS 477 (498)
T ss_pred --CCCCCCCCCC---CcchhhhhHhhcccch-hhcCCCCC--chhHHHhcccchhc-ccCHH--HHhhh-hcccccCcee
Confidence 0111111111 1122211122222222 23443332 34456677777776 55655 44566 6777777776
Q ss_pred ccCChhccCCCCCCEEECCCC
Q 037951 528 GFIPSFFRTSRGIRKVDLSRN 548 (627)
Q Consensus 528 ~~~~~~l~~l~~L~~L~ls~n 548 (627)
...-..|.++++|.+|-+++|
T Consensus 478 ~Lsn~tf~n~tql~tlilsyn 498 (498)
T KOG4237|consen 478 SLSNYTFSNMTQLSTLILSYN 498 (498)
T ss_pred hhhcccccchhhhheeEEecC
Confidence 655566777777777777765
|
|
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.2e-26 Score=211.74 Aligned_cols=427 Identities=19% Similarity=0.211 Sum_probs=244.0
Q ss_pred EECCCCCCcccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEEccCccccccCCccccCCCCCCeeeCCC-CC
Q 037951 78 INLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPM-NN 156 (627)
Q Consensus 78 L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~-n~ 156 (627)
+|-++-+++ .+|..+. +.-..++|..|+|+.+.|.+|+.+++|++||||+|.|+.+.|.+|.++.+|..|-+.+ |+
T Consensus 51 VdCr~~GL~-eVP~~LP--~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~Nk 127 (498)
T KOG4237|consen 51 VDCRGKGLT-EVPANLP--PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNK 127 (498)
T ss_pred EEccCCCcc-cCcccCC--CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCc
Confidence 555666666 5666554 4668899999999988888999999999999999999999999999999988887766 89
Q ss_pred CCCCCCCCCCCCCCCCEEECCCCCCCCCCCCccCCCCCccEEEeeCccccccCCccccCCCCCcEEEeecccCccCCChh
Q 037951 157 LTGGIPPFLGNLTSLEVVSLAGNPFGGNIPDSLGQLKELKTLGIGGNNLSGSIPPSIYNLSFLVIFSVSENQMHGSLPPS 236 (627)
Q Consensus 157 l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~ 236 (627)
|+......|+++.+|+.|.+.-|++.....+.|..++++..|.+..|.+...-...+..+..++.+.+..|.+...
T Consensus 128 I~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icd---- 203 (498)
T KOG4237|consen 128 ITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICD---- 203 (498)
T ss_pred hhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccc----
Confidence 9966667799999999999999999988888899999999999999988844444777788888887777664311
Q ss_pred hhhcCCCCceeccCCccccccCCccccCCCCCcEeecccccccccCccCcCCCCCcCEEeccCccCCCCCCCCccccccC
Q 037951 237 LGLYFPNLKLFQTNENFFSGSIPISLSNASKLEYVEIASNSFFGKLSVNFGGMKNLSYLILEYNNLGSGESDEMGFMNSL 316 (627)
Q Consensus 237 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l 316 (627)
-+|+.+ ... ....+..+++.....-..+.+.++...... .+..
T Consensus 204 -----CnL~wl---------------------a~~-------~a~~~ietsgarc~~p~rl~~~Ri~q~~a~--kf~c-- 246 (498)
T KOG4237|consen 204 -----CNLPWL---------------------ADD-------LAMNPIETSGARCVSPYRLYYKRINQEDAR--KFLC-- 246 (498)
T ss_pred -----cccchh---------------------hhH-------HhhchhhcccceecchHHHHHHHhcccchh--hhhh--
Confidence 111111 000 000111122222222222222222221111 0000
Q ss_pred CCCCcccEEEccCcccccccchh-HHhccccccEEEeecccccccCcccccCCCCCCEEeCCCCccccccchhhcCCCCC
Q 037951 317 ANCSKLQVLSLGGNQFRGALPHS-IANLSSQLQILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSIPKEMGKLLNL 395 (627)
Q Consensus 317 ~~~~~L~~L~l~~n~~~~~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L 395 (627)
....+..-..+.+...+..|.. |..++ +|++|++++|++++.-+.+|.+...+++|++..|++...-...|.++..|
T Consensus 247 -~~esl~s~~~~~d~~d~~cP~~cf~~L~-~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L 324 (498)
T KOG4237|consen 247 -SLESLPSRLSSEDFPDSICPAKCFKKLP-NLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGL 324 (498)
T ss_pred -hHHhHHHhhccccCcCCcChHHHHhhcc-cceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccc
Confidence 0001100011112222233322 22222 55555555555555555555555555555555555554444455555555
Q ss_pred cEeeccCCcccccCChhhhCCCCCCEEEccCCcccc-----ccChhhcCCCCCCEEECcCCcCcccCCccccccccCccE
Q 037951 396 QGLDFGGNHFSGEIPSTLGNLSSLYEIFLGDNNLSG-----VIPSSLGNLERLAILEMFANELSGTIPGDIFNISSLSVS 470 (627)
Q Consensus 396 ~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~-----~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~ll~~ 470 (627)
+.|+|.+|+|+...|.+|....+|.+|++-.|++-- ...++++.- ... ..| -++-+..++.
T Consensus 325 ~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~-----------~~~-~~~--~Cq~p~~~~~ 390 (498)
T KOG4237|consen 325 KTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKK-----------SVV-GNP--RCQSPGFVRQ 390 (498)
T ss_pred eeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHHHhhC-----------CCC-CCC--CCCCCchhcc
Confidence 556666666555555555555555555555444310 011111110 000 000 0000111123
Q ss_pred EEccCCcccc---CCCc---------cccCCCCCCEE-EccCCcccccCCccccCCCCCCEEECCCCcccccCChhccCC
Q 037951 471 LDLAENHFVG---SIPP---------RIGNLKALRCF-DVSNNDLSGEIPSELGLCSSLEEIYLAENFFNGFIPSFFRTS 537 (627)
Q Consensus 471 L~l~~n~l~~---~~~~---------~l~~l~~L~~L-~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l 537 (627)
+.+++..+.. ..|+ .=..++.+.++ ..|+..++ .+|..+. ..-.+|++.+|.++. +|.. .+
T Consensus 391 ~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvRcSnk~lk-~lp~~iP--~d~telyl~gn~~~~-vp~~--~~ 464 (498)
T KOG4237|consen 391 IPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDTVVRCSNKLLK-LLPRGIP--VDVTELYLDGNAITS-VPDE--LL 464 (498)
T ss_pred ccchhccccccccCCccccCCCCCCCCCCCcchhhhhHhhcccchh-hcCCCCC--chhHHHhcccchhcc-cCHH--HH
Confidence 3333332211 0111 11223444433 34444444 6666554 356789999999985 4544 56
Q ss_pred CCCCEEECCCCcCccccchhcccCc-CCeeeCcCC
Q 037951 538 RGIRKVDLSRNNFFGQIPIFLEALS-LEYLNLSFN 571 (627)
Q Consensus 538 ~~L~~L~ls~n~l~~~~p~~~~~~~-L~~L~ls~n 571 (627)
.+| .+|+++|+++..-...+.+++ |.+|-+++|
T Consensus 465 ~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn 498 (498)
T KOG4237|consen 465 RSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN 498 (498)
T ss_pred hhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence 778 899999999865556677777 888877765
|
|
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=4e-19 Score=189.68 Aligned_cols=113 Identities=26% Similarity=0.376 Sum_probs=58.9
Q ss_pred CCEEECCCCCCcccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEEccCccccccCCccccCCCCCCeeeCCC
Q 037951 75 LREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPM 154 (627)
Q Consensus 75 L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~ 154 (627)
-..|+++++.++ .+|..+. ++|+.|++++|+++ .+|. ..++|++|++++|+++ .+|.. .++|+.|++++
T Consensus 203 ~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt-~LP~---lp~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~Ls~ 271 (788)
T PRK15387 203 NAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPVL---PPGLLELSIFS 271 (788)
T ss_pred CcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCC-CCCC---CCCCCcEEEecCCccC-cccCc---ccccceeeccC
Confidence 445666666665 4555554 35666666666666 3443 2355666666666665 33322 24555666666
Q ss_pred CCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCccCCCCCccEEEeeCcccc
Q 037951 155 NNLTGGIPPFLGNLTSLEVVSLAGNPFGGNIPDSLGQLKELKTLGIGGNNLS 206 (627)
Q Consensus 155 n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~ 206 (627)
|.+. .+|.. ..+|+.|++++|+++. +|.. .++|+.|++++|.++
T Consensus 272 N~L~-~Lp~l---p~~L~~L~Ls~N~Lt~-LP~~---p~~L~~LdLS~N~L~ 315 (788)
T PRK15387 272 NPLT-HLPAL---PSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLA 315 (788)
T ss_pred Cchh-hhhhc---hhhcCEEECcCCcccc-cccc---ccccceeECCCCccc
Confidence 6554 23321 1345555555555552 3321 244555555555554
|
|
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.2e-19 Score=189.47 Aligned_cols=261 Identities=25% Similarity=0.255 Sum_probs=156.2
Q ss_pred eeccCCccccccCCccccCCCCCcEeecccccccccCccCcCCCCCcCEEeccCccCCCCCCCCccccccCCCCCcccEE
Q 037951 246 LFQTNENFFSGSIPISLSNASKLEYVEIASNSFFGKLSVNFGGMKNLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVL 325 (627)
Q Consensus 246 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L 325 (627)
.|+++.+.++ .+|..+. ++|+.|++.+|.++.. |. ..++|++|++++|.++.++. ..++|+.|
T Consensus 205 ~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt~L-P~---lp~~Lk~LdLs~N~LtsLP~----------lp~sL~~L 267 (788)
T PRK15387 205 VLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTSL-PA---LPPELRTLEVSGNQLTSLPV----------LPPGLLEL 267 (788)
T ss_pred EEEcCCCCCC-cCCcchh--cCCCEEEccCCcCCCC-CC---CCCCCcEEEecCCccCcccC----------ccccccee
Confidence 4444444444 3343332 2556666666655442 21 23566777777776665321 12466777
Q ss_pred EccCcccccccchhHHhccccccEEEeecccccccCcccccCCCCCCEEeCCCCccccccchhhcCCCCCcEeeccCCcc
Q 037951 326 SLGGNQFRGALPHSIANLSSQLQILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHF 405 (627)
Q Consensus 326 ~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~ 405 (627)
++++|.+. .+|. .+.+|+.|++++|+++. +|. ..++|+.|++++|++++ +|.. ..+|+.|++++|.+
T Consensus 268 ~Ls~N~L~-~Lp~----lp~~L~~L~Ls~N~Lt~-LP~---~p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L 334 (788)
T PRK15387 268 SIFSNPLT-HLPA----LPSGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQL 334 (788)
T ss_pred eccCCchh-hhhh----chhhcCEEECcCCcccc-ccc---cccccceeECCCCcccc-CCCC---cccccccccccCcc
Confidence 77777665 3332 22356777777777663 333 23567777777777763 3332 23566777777777
Q ss_pred cccCChhhhCCCCCCEEEccCCccccccChhhcCCCCCCEEECcCCcCcccCCccccccccCccEEEccCCccccCCCcc
Q 037951 406 SGEIPSTLGNLSSLYEIFLGDNNLSGVIPSSLGNLERLAILEMFANELSGTIPGDIFNISSLSVSLDLAENHFVGSIPPR 485 (627)
Q Consensus 406 ~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~ll~~L~l~~n~l~~~~~~~ 485 (627)
+ .+|.. ..+|+.|++++|++++ +|.. ..+|+.|++++|.+. .+|... ..+ +.|++++|++.+ +|..
T Consensus 335 ~-~LP~l---p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~-~LP~l~---~~L-~~LdLs~N~Lt~-LP~l 400 (788)
T PRK15387 335 T-SLPTL---PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLT-SLPALP---SGL-KELIVSGNRLTS-LPVL 400 (788)
T ss_pred c-ccccc---ccccceEecCCCccCC-CCCC---Ccccceehhhccccc-cCcccc---ccc-ceEEecCCcccC-CCCc
Confidence 6 34431 2467777777777773 4432 345677777777776 455432 234 677777777763 4432
Q ss_pred ccCCCCCCEEEccCCcccccCCccccCCCCCCEEECCCCcccccCChhccCCCCCCEEECCCCcCccccchhc
Q 037951 486 IGNLKALRCFDVSNNDLSGEIPSELGLCSSLEEIYLAENFFNGFIPSFFRTSRGIRKVDLSRNNFFGQIPIFL 558 (627)
Q Consensus 486 l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~ 558 (627)
.++|+.|++++|.++ .+|.. ..+|+.|++++|.++ .+|..+..+++|+.|++++|++++..+..+
T Consensus 401 ---~s~L~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 401 ---PSELKELMVSGNRLT-SLPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred ---ccCCCEEEccCCcCC-CCCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence 256777888888776 46643 245677788888877 467777777788888888888877666554
|
|
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.1e-19 Score=180.16 Aligned_cols=90 Identities=23% Similarity=0.319 Sum_probs=41.5
Q ss_pred ccCCCCCCEEeCCCCccccccchhhcCCCC---CcEeeccCCcccc----cCChhhhCC-CCCCEEEccCCccccc----
Q 037951 365 IGNLVNLYSLQTEENQFTGSIPKEMGKLLN---LQGLDFGGNHFSG----EIPSTLGNL-SSLYEIFLGDNNLSGV---- 432 (627)
Q Consensus 365 ~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~---L~~L~L~~n~~~~----~~~~~~~~~-~~L~~L~l~~n~~~~~---- 432 (627)
+..+++|+.|++++|.+....+..+..+.. |+.|++++|++.+ .+...+..+ ++|+.|++++|.+++.
T Consensus 77 l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~ 156 (319)
T cd00116 77 LTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEA 156 (319)
T ss_pred HHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHH
Confidence 344555555555555554333333333333 5555555555542 111223333 5555555555555421
Q ss_pred cChhhcCCCCCCEEECcCCcCc
Q 037951 433 IPSSLGNLERLAILEMFANELS 454 (627)
Q Consensus 433 ~~~~l~~l~~L~~L~l~~n~l~ 454 (627)
++..+..+++|+.|++++|.+.
T Consensus 157 ~~~~~~~~~~L~~L~l~~n~l~ 178 (319)
T cd00116 157 LAKALRANRDLKELNLANNGIG 178 (319)
T ss_pred HHHHHHhCCCcCEEECcCCCCc
Confidence 1223334445555555555544
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.1e-19 Score=178.94 Aligned_cols=250 Identities=24% Similarity=0.233 Sum_probs=176.6
Q ss_pred cccEEEeecccccc----cCcccccCCCCCCEEeCCCCccc------cccchhhcCCCCCcEeeccCCcccccCChhhhC
Q 037951 346 QLQILVLGTNQLYG----SIPSGIGNLVNLYSLQTEENQFT------GSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLGN 415 (627)
Q Consensus 346 ~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~l~~n~~~------~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~ 415 (627)
.++.++++++.+++ .++..+...+.++.++++++.+. ..++..+..+++|+.|++++|.+.+..+..+..
T Consensus 24 ~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 103 (319)
T cd00116 24 CLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLES 103 (319)
T ss_pred hccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHH
Confidence 45555555555432 13334445566777777766554 234456777899999999999998666666655
Q ss_pred CCC---CCEEEccCCcccc----ccChhhcCC-CCCCEEECcCCcCccc----CCccccccccCccEEEccCCccccC--
Q 037951 416 LSS---LYEIFLGDNNLSG----VIPSSLGNL-ERLAILEMFANELSGT----IPGDIFNISSLSVSLDLAENHFVGS-- 481 (627)
Q Consensus 416 ~~~---L~~L~l~~n~~~~----~~~~~l~~l-~~L~~L~l~~n~l~~~----~~~~~~~~~~ll~~L~l~~n~l~~~-- 481 (627)
+.. |++|++++|.++. .+...+..+ ++|+.|++++|.+.+. ++..+..+..+ ++|++++|.+.+.
T Consensus 104 l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L-~~L~l~~n~l~~~~~ 182 (319)
T cd00116 104 LLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDL-KELNLANNGIGDAGI 182 (319)
T ss_pred HhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCc-CEEECcCCCCchHHH
Confidence 555 9999999999873 223345666 8999999999998742 33345555677 8999999998742
Q ss_pred --CCccccCCCCCCEEEccCCccccc----CCccccCCCCCCEEECCCCcccccCChhcc-----CCCCCCEEECCCCcC
Q 037951 482 --IPPRIGNLKALRCFDVSNNDLSGE----IPSELGLCSSLEEIYLAENFFNGFIPSFFR-----TSRGIRKVDLSRNNF 550 (627)
Q Consensus 482 --~~~~l~~l~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~-----~l~~L~~L~ls~n~l 550 (627)
++..+..+++|++|++++|.+++. ++..+..+++|++|++++|.+++.....+. ..+.|++|++++|.+
T Consensus 183 ~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i 262 (319)
T cd00116 183 RALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDI 262 (319)
T ss_pred HHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCC
Confidence 233455668999999999998633 344567789999999999999864332222 247999999999998
Q ss_pred cc----ccchhcccCc-CCeeeCcCCccccc----CCC-CCcc-CCCCccccccCCC
Q 037951 551 FG----QIPIFLEALS-LEYLNLSFNDFEGR----LPT-RGIF-ANASAISVGGCNR 596 (627)
Q Consensus 551 ~~----~~p~~~~~~~-L~~L~ls~n~l~~~----~p~-~~~~-~~l~~l~~~~n~~ 596 (627)
+. .+...+.... |+++++++|++... +.. ...+ +.++.+++.+||+
T Consensus 263 ~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 263 TDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred CcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 72 3444455555 99999999999854 221 2334 6789999999874
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=5.1e-18 Score=182.55 Aligned_cols=223 Identities=22% Similarity=0.366 Sum_probs=111.3
Q ss_pred CCcEeecccccccccCccCcCCCCCcCEEeccCccCCCCCCCCccccccCCCCCcccEEEccCcccccccchhHHhcccc
Q 037951 267 KLEYVEIASNSFFGKLSVNFGGMKNLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLSSQ 346 (627)
Q Consensus 267 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~ 346 (627)
+...|+++++.++.. |..+ .+.++.|++++|.++.++. .+ +++|+.|++++|+++ .+|..+. .+
T Consensus 179 ~~~~L~L~~~~LtsL-P~~I--p~~L~~L~Ls~N~LtsLP~-------~l--~~nL~~L~Ls~N~Lt-sLP~~l~---~~ 242 (754)
T PRK15370 179 NKTELRLKILGLTTI-PACI--PEQITTLILDNNELKSLPE-------NL--QGNIKTLYANSNQLT-SIPATLP---DT 242 (754)
T ss_pred CceEEEeCCCCcCcC-Cccc--ccCCcEEEecCCCCCcCCh-------hh--ccCCCEEECCCCccc-cCChhhh---cc
Confidence 456677777666543 3322 2467777777777665332 11 136677777777666 4454332 25
Q ss_pred ccEEEeecccccccCcccccCCCCCCEEeCCCCccccccchhhcCCCCCcEeeccCCcccccCChhhhCCCCCCEEEccC
Q 037951 347 LQILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLGD 426 (627)
Q Consensus 347 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~ 426 (627)
|+.|++++|.+. .+|..+. .+|+.|++++|+++ .+|..+. ++|+.|++++|+++ .+|..+. ++|+.|++++
T Consensus 243 L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp--~sL~~L~Ls~ 313 (754)
T PRK15370 243 IQEMELSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIR-TLPAHLP--SGITHLNVQS 313 (754)
T ss_pred ccEEECcCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCccc-cCcccch--hhHHHHHhcC
Confidence 666666666665 3444332 35666666666665 3444332 35666666666655 2333221 3455566666
Q ss_pred CccccccChhhcCCCCCCEEECcCCcCcccCCccccccccCccEEEccCCccccCCCccccCCCCCCEEEccCCcccccC
Q 037951 427 NNLSGVIPSSLGNLERLAILEMFANELSGTIPGDIFNISSLSVSLDLAENHFVGSIPPRIGNLKALRCFDVSNNDLSGEI 506 (627)
Q Consensus 427 n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~ll~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~ 506 (627)
|.++. +|..+ .++|+.|++++|.+. .+|..+. +++ +.|++++|++. .+|..+. ++|++|++++|+++ .+
T Consensus 314 N~Lt~-LP~~l--~~sL~~L~Ls~N~Lt-~LP~~l~--~sL-~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt-~L 382 (754)
T PRK15370 314 NSLTA-LPETL--PPGLKTLEAGENALT-SLPASLP--PEL-QVLDVSKNQIT-VLPETLP--PTITTLDVSRNALT-NL 382 (754)
T ss_pred Ccccc-CCccc--cccceeccccCCccc-cCChhhc--Ccc-cEEECCCCCCC-cCChhhc--CCcCEEECCCCcCC-CC
Confidence 65552 33222 235555555555554 2443322 233 44555555444 2333221 34445555555444 33
Q ss_pred CccccCCCCCCEEECCCCccc
Q 037951 507 PSELGLCSSLEEIYLAENFFN 527 (627)
Q Consensus 507 ~~~l~~l~~L~~L~L~~n~i~ 527 (627)
|..+. ..|+.|++++|+++
T Consensus 383 P~~l~--~sL~~LdLs~N~L~ 401 (754)
T PRK15370 383 PENLP--AALQIMQASRNNLV 401 (754)
T ss_pred CHhHH--HHHHHHhhccCCcc
Confidence 33332 23444444554444
|
|
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.4e-18 Score=183.87 Aligned_cols=246 Identities=24% Similarity=0.411 Sum_probs=159.4
Q ss_pred CCcCEEeccCccCCCCCCCCccccccCCCCCcccEEEccCcccccccchhHHhccccccEEEeecccccccCcccccCCC
Q 037951 290 KNLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLSSQLQILVLGTNQLYGSIPSGIGNLV 369 (627)
Q Consensus 290 ~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~ 369 (627)
.+...|+++++.++.++. .+ .+.++.|++++|+++ .+|..+. .+|+.|++++|+++ .+|..+. .
T Consensus 178 ~~~~~L~L~~~~LtsLP~-------~I--p~~L~~L~Ls~N~Lt-sLP~~l~---~nL~~L~Ls~N~Lt-sLP~~l~--~ 241 (754)
T PRK15370 178 NNKTELRLKILGLTTIPA-------CI--PEQITTLILDNNELK-SLPENLQ---GNIKTLYANSNQLT-SIPATLP--D 241 (754)
T ss_pred cCceEEEeCCCCcCcCCc-------cc--ccCCcEEEecCCCCC-cCChhhc---cCCCEEECCCCccc-cCChhhh--c
Confidence 356778888877776432 12 246788888888887 5565443 27888888888877 4454443 4
Q ss_pred CCCEEeCCCCccccccchhhcCCCCCcEeeccCCcccccCChhhhCCCCCCEEEccCCccccccChhhcCCCCCCEEECc
Q 037951 370 NLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLGDNNLSGVIPSSLGNLERLAILEMF 449 (627)
Q Consensus 370 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~ 449 (627)
+|+.|++++|.+. .+|..+. .+|+.|++++|++. .+|..+. ++|+.|++++|++++ +|..+. ++|+.|+++
T Consensus 242 ~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls 312 (754)
T PRK15370 242 TIQEMELSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQ 312 (754)
T ss_pred cccEEECcCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCcccc-Ccccch--hhHHHHHhc
Confidence 6788888888777 5565553 46888888888777 4555442 478888888887773 444332 367777777
Q ss_pred CCcCcccCCccccccccCccEEEccCCccccCCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEECCCCccccc
Q 037951 450 ANELSGTIPGDIFNISSLSVSLDLAENHFVGSIPPRIGNLKALRCFDVSNNDLSGEIPSELGLCSSLEEIYLAENFFNGF 529 (627)
Q Consensus 450 ~n~l~~~~~~~~~~~~~ll~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~ 529 (627)
+|.+. .+|..+. .++ +.|++++|.+.+ +|..+. ++|+.|++++|+++ .+|..+. ++|++|++++|.++.
T Consensus 313 ~N~Lt-~LP~~l~--~sL-~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt~- 381 (754)
T PRK15370 313 SNSLT-ALPETLP--PGL-KTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALTN- 381 (754)
T ss_pred CCccc-cCCcccc--ccc-eeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCCC-
Confidence 77776 4554332 344 777777777764 454443 57777777777776 5665443 577777777777774
Q ss_pred CChhccCCCCCCEEECCCCcCccccch----hcccCc-CCeeeCcCCccc
Q 037951 530 IPSFFRTSRGIRKVDLSRNNFFGQIPI----FLEALS-LEYLNLSFNDFE 574 (627)
Q Consensus 530 ~~~~l~~l~~L~~L~ls~n~l~~~~p~----~~~~~~-L~~L~ls~n~l~ 574 (627)
+|..+. ..|+.|++++|.+. .+|. .....+ +..+++.+|+++
T Consensus 382 LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 382 LPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred CCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 444443 35777777777776 3443 222323 677777777775
|
|
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1e-19 Score=151.11 Aligned_cols=164 Identities=31% Similarity=0.509 Sum_probs=145.5
Q ss_pred cCCCCCCCEEECCCCCCcccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEEccCccccccCCccccCCCCCC
Q 037951 69 IGNLSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLK 148 (627)
Q Consensus 69 l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~ 148 (627)
+.++.+++.|.||+|+++ .+|..+..+.+|+.|++++|+++ .+|.+++.+++|+.|+++-|++. ..|..|+.++.|+
T Consensus 29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~le 105 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALE 105 (264)
T ss_pred ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhh
Confidence 446778899999999998 67778999999999999999998 88999999999999999999988 8999999999999
Q ss_pred eeeCCCCCCCC-CCCCCCCCCCCCCEEECCCCCCCCCCCCccCCCCCccEEEeeCccccccCCccccCCCCCcEEEeecc
Q 037951 149 QLALPMNNLTG-GIPPFLGNLTSLEVVSLAGNPFGGNIPDSLGQLKELKTLGIGGNNLSGSIPPSIYNLSFLVIFSVSEN 227 (627)
Q Consensus 149 ~L~l~~n~l~~-~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n 227 (627)
.||+.+|.+.. .+|..|..++.|+-|++++|.+. .+|..++++++|+.|.+..|.+- .+|..++.++.|+.|.+.+|
T Consensus 106 vldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgn 183 (264)
T KOG0617|consen 106 VLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGN 183 (264)
T ss_pred hhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccc
Confidence 99999998865 77888999999999999999999 78888999999999999999887 78889999999999999999
Q ss_pred cCccCCChhhh
Q 037951 228 QMHGSLPPSLG 238 (627)
Q Consensus 228 ~l~~~~~~~~~ 238 (627)
+++ .+|..++
T Consensus 184 rl~-vlppel~ 193 (264)
T KOG0617|consen 184 RLT-VLPPELA 193 (264)
T ss_pred eee-ecChhhh
Confidence 887 5555443
|
|
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.63 E-value=9.5e-18 Score=139.54 Aligned_cols=180 Identities=27% Similarity=0.542 Sum_probs=135.5
Q ss_pred cCCCCCCEEeCCCCccccccchhhcCCCCCcEeeccCCcccccCChhhhCCCCCCEEEccCCccccccChhhcCCCCCCE
Q 037951 366 GNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLGDNNLSGVIPSSLGNLERLAI 445 (627)
Q Consensus 366 ~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~ 445 (627)
.++..++.|.+++|+++ .+|..+..+.+|+.|++.+|++. .+|..++.+++|+.|++.-|++. ..|..|+.++.|+.
T Consensus 30 f~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~lev 106 (264)
T KOG0617|consen 30 FNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEV 106 (264)
T ss_pred cchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhh
Confidence 34556677777777777 55666777788888888888877 66777777888888888877776 67778888888888
Q ss_pred EECcCCcCc-ccCCccccccccCccEEEccCCccccCCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEECCCC
Q 037951 446 LEMFANELS-GTIPGDIFNISSLSVSLDLAENHFVGSIPPRIGNLKALRCFDVSNNDLSGEIPSELGLCSSLEEIYLAEN 524 (627)
Q Consensus 446 L~l~~n~l~-~~~~~~~~~~~~ll~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n 524 (627)
|++.+|.+. ..+|..|+.+..+ +.|++++|.+. .+|..++++++|+.|.+.+|.+. .+|..++.++.|++|.+.+|
T Consensus 107 ldltynnl~e~~lpgnff~m~tl-ralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgn 183 (264)
T KOG0617|consen 107 LDLTYNNLNENSLPGNFFYMTTL-RALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGN 183 (264)
T ss_pred hhccccccccccCCcchhHHHHH-HHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccc
Confidence 888887764 3678888888888 88899999887 77888899999999999999887 88888999999999999999
Q ss_pred cccccCChhccCCC---CCCEEECCCCcCcc
Q 037951 525 FFNGFIPSFFRTSR---GIRKVDLSRNNFFG 552 (627)
Q Consensus 525 ~i~~~~~~~l~~l~---~L~~L~ls~n~l~~ 552 (627)
.++...|+ ++++. +=+.+.+.+|+...
T Consensus 184 rl~vlppe-l~~l~l~~~k~v~r~E~NPwv~ 213 (264)
T KOG0617|consen 184 RLTVLPPE-LANLDLVGNKQVMRMEENPWVN 213 (264)
T ss_pred eeeecChh-hhhhhhhhhHHHHhhhhCCCCC
Confidence 98854443 44321 22333444555443
|
|
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=8.7e-13 Score=142.00 Aligned_cols=156 Identities=32% Similarity=0.491 Sum_probs=124.1
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCC-----CcccceeecCCCCcceecccccCCCCCCCEEECCCCCCc
Q 037951 12 AAFEEGDLAALQAFKSMISHDPQGILNSWNDSRHFC-----EWEGITCDLRSKALSGLLSPQIGNLSFLREINLMNNTIQ 86 (627)
Q Consensus 12 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~w~~~~~~c-----~~~~~~c~l~~~~l~~~~~~~l~~l~~L~~L~Ls~~~~~ 86 (627)
++..++|.++|..+|.++. ++. ..+|... .| .|.|+.|+..... ....++.|+|++|.+.
T Consensus 367 ~~t~~~~~~aL~~~k~~~~-~~~--~~~W~g~--~C~p~~~~w~Gv~C~~~~~~----------~~~~v~~L~L~~n~L~ 431 (623)
T PLN03150 367 SKTLLEEVSALQTLKSSLG-LPL--RFGWNGD--PCVPQQHPWSGADCQFDSTK----------GKWFIDGLGLDNQGLR 431 (623)
T ss_pred cccCchHHHHHHHHHHhcC-Ccc--cCCCCCC--CCCCcccccccceeeccCCC----------CceEEEEEECCCCCcc
Confidence 3446678999999999985 332 2478643 44 6999999542210 1124788999999999
Q ss_pred ccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEEccCccccccCCccccCCCCCCeeeCCCCCCCCCCCCCCC
Q 037951 87 GEIPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTGGIPPFLG 166 (627)
Q Consensus 87 ~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~ 166 (627)
+.+|..+..+++|+.|+|++|.+.+.+|..++.+++|+.|++++|++.+.+|..++.+++|++|++++|.+.+.+|..+.
T Consensus 432 g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~ 511 (623)
T PLN03150 432 GFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALG 511 (623)
T ss_pred ccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHh
Confidence 99999999999999999999999989999999999999999999999988999999999999999999999888888776
Q ss_pred CC-CCCCEEECCCCCCC
Q 037951 167 NL-TSLEVVSLAGNPFG 182 (627)
Q Consensus 167 ~l-~~L~~L~L~~n~~~ 182 (627)
.. .++..+++.+|...
T Consensus 512 ~~~~~~~~l~~~~N~~l 528 (623)
T PLN03150 512 GRLLHRASFNFTDNAGL 528 (623)
T ss_pred hccccCceEEecCCccc
Confidence 53 45667777777543
|
|
| >KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.24 E-value=5.4e-13 Score=131.84 Aligned_cols=192 Identities=24% Similarity=0.370 Sum_probs=135.6
Q ss_pred ccEEEeecccccccCcccccCCCCCCEEeCCCCccccccchhhcCCCCCcEeeccCCcccccCChhhhCCCCCCEEEccC
Q 037951 347 LQILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLGD 426 (627)
Q Consensus 347 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~ 426 (627)
-...+++.|++. .+|..++.+..|..+.+..|.+. .+|.++..+..|+.+||+.|++. .+|..++.++ |+.|.+++
T Consensus 77 t~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sN 152 (722)
T KOG0532|consen 77 TVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSN 152 (722)
T ss_pred hhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEec
Confidence 445677777776 66777777777777777777777 67777777788888888888877 6666666554 77777778
Q ss_pred CccccccChhhcCCCCCCEEECcCCcCcccCCccccccccCccEEEccCCccccCCCccccCCCCCCEEEccCCcccccC
Q 037951 427 NNLSGVIPSSLGNLERLAILEMFANELSGTIPGDIFNISSLSVSLDLAENHFVGSIPPRIGNLKALRCFDVSNNDLSGEI 506 (627)
Q Consensus 427 n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~ll~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~ 506 (627)
|+++ .+|+.++..+.|..|+.+.|.+. ++|..+..+.++ +.|.+..|++. .+|+.+.. -.|..||+|+|++. .+
T Consensus 153 Nkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~sl-r~l~vrRn~l~-~lp~El~~-LpLi~lDfScNkis-~i 226 (722)
T KOG0532|consen 153 NKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSL-RDLNVRRNHLE-DLPEELCS-LPLIRLDFSCNKIS-YL 226 (722)
T ss_pred Cccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHH-HHHHHhhhhhh-hCCHHHhC-CceeeeecccCcee-ec
Confidence 7777 66777777777777888887777 777777777777 77777777776 45555553 34677777777776 77
Q ss_pred CccccCCCCCCEEECCCCcccccCChhc---cCCCCCCEEECCCCc
Q 037951 507 PSELGLCSSLEEIYLAENFFNGFIPSFF---RTSRGIRKVDLSRNN 549 (627)
Q Consensus 507 ~~~l~~l~~L~~L~L~~n~i~~~~~~~l---~~l~~L~~L~ls~n~ 549 (627)
|-+|..++.|++|-|.+|.++ ..|..+ +...-.|+|+..-|+
T Consensus 227 Pv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 227 PVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred chhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhcc
Confidence 777777777777777777776 344333 223445666666663
|
|
| >KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.8e-13 Score=133.80 Aligned_cols=197 Identities=24% Similarity=0.392 Sum_probs=158.7
Q ss_pred CCCCcccEEEccCcccccccchhHHhccccccEEEeecccccccCcccccCCCCCCEEeCCCCccccccchhhcCCCCCc
Q 037951 317 ANCSKLQVLSLGGNQFRGALPHSIANLSSQLQILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSIPKEMGKLLNLQ 396 (627)
Q Consensus 317 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~ 396 (627)
..+..-...+++.|++. ++|..+..+. .|+.+.+..|.+. .+|..+.++..|..++++.|++. .+|..++.++ |+
T Consensus 72 ~~ltdt~~aDlsrNR~~-elp~~~~~f~-~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lk 146 (722)
T KOG0532|consen 72 YDLTDTVFADLSRNRFS-ELPEEACAFV-SLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LK 146 (722)
T ss_pred ccccchhhhhccccccc-cCchHHHHHH-HHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ce
Confidence 34455567888889888 7787777766 7888888888887 78888999999999999999988 6677777664 88
Q ss_pred EeeccCCcccccCChhhhCCCCCCEEEccCCccccccChhhcCCCCCCEEECcCCcCcccCCccccccccCccEEEccCC
Q 037951 397 GLDFGGNHFSGEIPSTLGNLSSLYEIFLGDNNLSGVIPSSLGNLERLAILEMFANELSGTIPGDIFNISSLSVSLDLAEN 476 (627)
Q Consensus 397 ~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~ll~~L~l~~n 476 (627)
.|-+++|+++ .+|..++..+.|..||.+.|.+. .+|..+.++.+|+.|.++.|++. .+|..+. ...+ ..||+++|
T Consensus 147 vli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~-~LpL-i~lDfScN 221 (722)
T KOG0532|consen 147 VLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELC-SLPL-IRLDFSCN 221 (722)
T ss_pred eEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHh-CCce-eeeecccC
Confidence 9999999988 77887888889999999999988 66778888999999999999988 7888777 4456 68999999
Q ss_pred ccccCCCccccCCCCCCEEEccCCcccccCCcccc---CCCCCCEEECCCCc
Q 037951 477 HFVGSIPPRIGNLKALRCFDVSNNDLSGEIPSELG---LCSSLEEIYLAENF 525 (627)
Q Consensus 477 ~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~---~l~~L~~L~L~~n~ 525 (627)
++. .+|.+|.+|+.|++|-|.+|.+. ..|..+. ...--++|+...+.
T Consensus 222 kis-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 222 KIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred cee-ecchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhcc
Confidence 987 78888999999999999999997 5555543 23334567776664
|
|
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.18 E-value=4e-11 Score=123.70 Aligned_cols=195 Identities=31% Similarity=0.489 Sum_probs=93.4
Q ss_pred EEEccCcccccccchhHHhccccccEEEeecccccccCcccccCCC-CCCEEeCCCCccccccchhhcCCCCCcEeeccC
Q 037951 324 VLSLGGNQFRGALPHSIANLSSQLQILVLGTNQLYGSIPSGIGNLV-NLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGG 402 (627)
Q Consensus 324 ~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~ 402 (627)
.++...+.+..... .+.... .++.|++.+|.++ .++....... +|+.|++++|.+. .++..+..+++|+.|++++
T Consensus 97 ~l~~~~~~~~~~~~-~~~~~~-~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~ 172 (394)
T COG4886 97 SLDLNLNRLRSNIS-ELLELT-NLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSF 172 (394)
T ss_pred eeeccccccccCch-hhhccc-ceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCC
Confidence 45666655532211 122222 4666666666665 3333344442 5666666666655 3334455556666666666
Q ss_pred CcccccCChhhhCCCCCCEEEccCCccccccChhhcCCCCCCEEECcCCcCcccCCccccccccCccEEEccCCccccCC
Q 037951 403 NHFSGEIPSTLGNLSSLYEIFLGDNNLSGVIPSSLGNLERLAILEMFANELSGTIPGDIFNISSLSVSLDLAENHFVGSI 482 (627)
Q Consensus 403 n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~ll~~L~l~~n~l~~~~ 482 (627)
|++. .++......+.|+.|++++|++. .+|........|+++.++.|+.. ..+..
T Consensus 173 N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~---------------------- 227 (394)
T COG4886 173 NDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSS---------------------- 227 (394)
T ss_pred chhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchh----------------------
Confidence 6655 33333334555555556555555 33433333334555555555322 22333
Q ss_pred CccccCCCCCCEEEccCCcccccCCccccCCCCCCEEECCCCcccccCChhccCCCCCCEEECCCCcCccc
Q 037951 483 PPRIGNLKALRCFDVSNNDLSGEIPSELGLCSSLEEIYLAENFFNGFIPSFFRTSRGIRKVDLSRNNFFGQ 553 (627)
Q Consensus 483 ~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~ls~n~l~~~ 553 (627)
+.++.++..+.+++|++. ..+..++.++.++.|++++|.++...+ +..+.+++.|++++|.+...
T Consensus 228 ---~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~ 292 (394)
T COG4886 228 ---LSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNA 292 (394)
T ss_pred ---hhhcccccccccCCceee-eccchhccccccceecccccccccccc--ccccCccCEEeccCcccccc
Confidence 344444444444444443 223444444445555555555543322 44445555555555544433
|
|
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.16 E-value=6.9e-11 Score=121.94 Aligned_cols=199 Identities=37% Similarity=0.529 Sum_probs=142.5
Q ss_pred CEEeccCccCCCCCCCCccccccCCCCCcccEEEccCcccccccchhHHhccccccEEEeecccccccCcccccCCCCCC
Q 037951 293 SYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLSSQLQILVLGTNQLYGSIPSGIGNLVNLY 372 (627)
Q Consensus 293 ~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 372 (627)
..++...+.+... ...+...+.++.|++.+|.++ .++.......++|+.|++++|++. .++..+..++.|+
T Consensus 96 ~~l~~~~~~~~~~-------~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~ 166 (394)
T COG4886 96 PSLDLNLNRLRSN-------ISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLK 166 (394)
T ss_pred ceeeccccccccC-------chhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhcccccc
Confidence 4577777766331 223445578999999999998 444444433127999999999998 5556788999999
Q ss_pred EEeCCCCccccccchhhcCCCCCcEeeccCCcccccCChhhhCCCCCCEEEccCCccccccChhhcCCCCCCEEECcCCc
Q 037951 373 SLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLGDNNLSGVIPSSLGNLERLAILEMFANE 452 (627)
Q Consensus 373 ~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~ 452 (627)
.|++++|++. .++...+..++|+.|++++|++. .+|........|+++.+++|.+. ..+..+..+.++..+.+.+|+
T Consensus 167 ~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~ 243 (394)
T COG4886 167 NLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNK 243 (394)
T ss_pred ccccCCchhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCce
Confidence 9999999998 56665557899999999999998 66665556677999999999755 456678888888888888887
Q ss_pred CcccCCccccccccCccEEEccCCccccCCCccccCCCCCCEEEccCCcccccCC
Q 037951 453 LSGTIPGDIFNISSLSVSLDLAENHFVGSIPPRIGNLKALRCFDVSNNDLSGEIP 507 (627)
Q Consensus 453 l~~~~~~~~~~~~~ll~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~ 507 (627)
+. .++..+..+..+ ++|++++|.+..... +..+.++++|++++|.+....+
T Consensus 244 ~~-~~~~~~~~l~~l-~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 244 LE-DLPESIGNLSNL-ETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred ee-eccchhcccccc-ceecccccccccccc--ccccCccCEEeccCccccccch
Confidence 76 334444555554 666666666653222 5556666666666666653333
|
|
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=6.5e-11 Score=127.60 Aligned_cols=116 Identities=31% Similarity=0.501 Sum_probs=78.9
Q ss_pred CCEEEccCCcccccCCccccCCCCCCEEECCCCcccccCChhccCCCCCCEEECCCCcCccccchhcccCc-CCeeeCcC
Q 037951 492 LRCFDVSNNDLSGEIPSELGLCSSLEEIYLAENFFNGFIPSFFRTSRGIRKVDLSRNNFFGQIPIFLEALS-LEYLNLSF 570 (627)
Q Consensus 492 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~~~-L~~L~ls~ 570 (627)
++.|+|++|.+.+.+|..++.+++|+.|+|++|.+++.+|..+..+++|+.|++++|.+.+.+|..+..+. |+.|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 55667777777666777777777777777777777767776677777777777777777777777666666 77777777
Q ss_pred CcccccCCCC--CccCCCCccccccCCCCcccCCCCCCCCCC
Q 037951 571 NDFEGRLPTR--GIFANASAISVGGCNRLCGGIHELQLPKCP 610 (627)
Q Consensus 571 n~l~~~~p~~--~~~~~l~~l~~~~n~~l~~~~~~l~i~~c~ 610 (627)
|++.|.+|.. ..+..+..+++.+|+.+||. |. +..|.
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~-p~--l~~C~ 538 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNAGLCGI-PG--LRACG 538 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCccccCC-CC--CCCCc
Confidence 7777777742 22344566778888888874 33 34563
|
|
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.4e-11 Score=112.35 Aligned_cols=203 Identities=21% Similarity=0.280 Sum_probs=99.5
Q ss_pred ccCCCCCcccEEEccCcccccccchhHHhccccccEEEeecccccccCcccccCCCCCCEEeCCCC-ccccccchhhcCC
Q 037951 314 NSLANCSKLQVLSLGGNQFRGALPHSIANLSSQLQILVLGTNQLYGSIPSGIGNLVNLYSLQTEEN-QFTGSIPKEMGKL 392 (627)
Q Consensus 314 ~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~~~~~~~~~~~~l 392 (627)
..+.-+++|+++.++.|.-..+. .+....+.|+++.+.+..++. .| .+-....+....-..- -.+|.....+..+
T Consensus 208 f~l~~f~~l~~~~~s~~~~~~i~--~~~~~kptl~t~~v~~s~~~~-~~-~l~pe~~~~D~~~~E~~t~~G~~~~~~dTW 283 (490)
T KOG1259|consen 208 FNLNAFRNLKTLKFSALSTENIV--DIELLKPTLQTICVHNTTIQD-VP-SLLPETILADPSGSEPSTSNGSALVSADTW 283 (490)
T ss_pred cchHHhhhhheeeeeccchhhee--ceeecCchhheeeeecccccc-cc-cccchhhhcCccCCCCCccCCceEEecchH
Confidence 34455677777777776433111 112223467777776654432 11 1111122222222111 1223333344456
Q ss_pred CCCcEeeccCCcccccCChhhhCCCCCCEEEccCCccccccChhhcCCCCCCEEECcCCcCcccCCccccccccCccEEE
Q 037951 393 LNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLGDNNLSGVIPSSLGNLERLAILEMFANELSGTIPGDIFNISSLSVSLD 472 (627)
Q Consensus 393 ~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~ll~~L~ 472 (627)
+.|+.+|+++|.|+ .+.+...-.|.++.|++++|.+... ..++.+++|+.|++++|.+. .+...-..+-.. ++|.
T Consensus 284 q~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNI-KtL~ 358 (490)
T KOG1259|consen 284 QELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNI-KTLK 358 (490)
T ss_pred hhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhH-hhhhhHhhhcCE-eeee
Confidence 67888888888887 5555566677888888888887733 23677777777777777665 222222222222 4444
Q ss_pred ccCCccccCCCccccCCCCCCEEEccCCccccc-CCccccCCCCCCEEECCCCccc
Q 037951 473 LAENHFVGSIPPRIGNLKALRCFDVSNNDLSGE-IPSELGLCSSLEEIYLAENFFN 527 (627)
Q Consensus 473 l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~-~~~~l~~l~~L~~L~L~~n~i~ 527 (627)
+++|.+... ..+..+-+|..||+++|+|... -...++++|.|+.+.|.+|.+.
T Consensus 359 La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 359 LAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred hhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence 444444311 1233444444444444444311 0122344444444444444443
|
|
| >KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.13 E-value=3e-12 Score=119.49 Aligned_cols=191 Identities=21% Similarity=0.245 Sum_probs=100.0
Q ss_pred CCCCCCeeeCCCCCCCCCCCCC----CCCCCCCCEEECCCCCCCCC-------------CCCccCCCCCccEEEeeCccc
Q 037951 143 SLYKLKQLALPMNNLTGGIPPF----LGNLTSLEVVSLAGNPFGGN-------------IPDSLGQLKELKTLGIGGNNL 205 (627)
Q Consensus 143 ~l~~L~~L~l~~n~l~~~~~~~----l~~l~~L~~L~L~~n~~~~~-------------~~~~l~~l~~L~~L~l~~n~~ 205 (627)
.+++|++|+||+|.+....+.. +..+..|++|+|.+|.+.-. .......-+.||++..++|++
T Consensus 90 ~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrl 169 (382)
T KOG1909|consen 90 GCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRL 169 (382)
T ss_pred cCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccc
Confidence 3445555555555544322222 23455555555555554411 011223345677777777766
Q ss_pred cc----cCCccccCCCCCcEEEeecccCccCCChhhhhcCCCCceeccCCccccccCCccccCCCCCcEeeccccccccc
Q 037951 206 SG----SIPPSIYNLSFLVIFSVSENQMHGSLPPSLGLYFPNLKLFQTNENFFSGSIPISLSNASKLEYVEIASNSFFGK 281 (627)
Q Consensus 206 ~~----~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 281 (627)
.. .+...+...+.|+.+.+..|.+...... .....+..+++|+.||+.+|.++..
T Consensus 170 en~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~---------------------al~eal~~~~~LevLdl~DNtft~e 228 (382)
T KOG1909|consen 170 ENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVT---------------------ALAEALEHCPHLEVLDLRDNTFTLE 228 (382)
T ss_pred ccccHHHHHHHHHhccccceEEEecccccCchhH---------------------HHHHHHHhCCcceeeecccchhhhH
Confidence 53 1233455566777777777766422211 1122345566666666666655433
Q ss_pred C----ccCcCCCCCcCEEeccCccCCCCCCCCccccccCC-CCCcccEEEccCcccccccc----hhHHhccccccEEEe
Q 037951 282 L----SVNFGGMKNLSYLILEYNNLGSGESDEMGFMNSLA-NCSKLQVLSLGGNQFRGALP----HSIANLSSQLQILVL 352 (627)
Q Consensus 282 ~----~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~-~~~~L~~L~l~~n~~~~~~~----~~~~~~~~~L~~L~l 352 (627)
. ...+..+++|+.+++++|.+..-+.. .+..++. ..+.|+++.+.+|.++.... ..+.. .+.|..|++
T Consensus 229 gs~~LakaL~s~~~L~El~l~dcll~~~Ga~--a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~e-k~dL~kLnL 305 (382)
T KOG1909|consen 229 GSVALAKALSSWPHLRELNLGDCLLENEGAI--AFVDALKESAPSLEVLELAGNEITRDAALALAACMAE-KPDLEKLNL 305 (382)
T ss_pred HHHHHHHHhcccchheeecccccccccccHH--HHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhc-chhhHHhcC
Confidence 2 23355666777777777766654332 2333332 25777777777777763322 22223 236778888
Q ss_pred ecccc
Q 037951 353 GTNQL 357 (627)
Q Consensus 353 ~~n~l 357 (627)
++|.+
T Consensus 306 ngN~l 310 (382)
T KOG1909|consen 306 NGNRL 310 (382)
T ss_pred Ccccc
Confidence 88877
|
|
| >KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.11 E-value=7.6e-12 Score=116.89 Aligned_cols=108 Identities=19% Similarity=0.263 Sum_probs=64.3
Q ss_pred cccEEEeecccccc----cCcccccCCCCCCEEeCCCCccccc----cchhhcCCCCCcEeeccCCcccccCChhh----
Q 037951 346 QLQILVLGTNQLYG----SIPSGIGNLVNLYSLQTEENQFTGS----IPKEMGKLLNLQGLDFGGNHFSGEIPSTL---- 413 (627)
Q Consensus 346 ~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~L~~n~~~~~~~~~~---- 413 (627)
.|+.+.+..|.+.. .+..++..+++|+.|||+.|-|+.. +...+..+++|+.|++++|.+...-...|
T Consensus 186 ~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al 265 (382)
T KOG1909|consen 186 TLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDAL 265 (382)
T ss_pred ccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHH
Confidence 44455555444431 1233456677777777777777632 23456667777777777777764433222
Q ss_pred -hCCCCCCEEEccCCcccccc----ChhhcCCCCCCEEECcCCcC
Q 037951 414 -GNLSSLYEIFLGDNNLSGVI----PSSLGNLERLAILEMFANEL 453 (627)
Q Consensus 414 -~~~~~L~~L~l~~n~~~~~~----~~~l~~l~~L~~L~l~~n~l 453 (627)
...|+|+.|.+.+|.++... ..++...+.|+.|++++|++
T Consensus 266 ~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 266 KESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred hccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 23677777888777776332 22344466677777777776
|
|
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.08 E-value=2.6e-11 Score=110.67 Aligned_cols=132 Identities=23% Similarity=0.235 Sum_probs=88.7
Q ss_pred CCCCCEEECcCCcCcccCCccccccccCccEEEccCCccccCCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEE
Q 037951 440 LERLAILEMFANELSGTIPGDIFNISSLSVSLDLAENHFVGSIPPRIGNLKALRCFDVSNNDLSGEIPSELGLCSSLEEI 519 (627)
Q Consensus 440 l~~L~~L~l~~n~l~~~~~~~~~~~~~ll~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L 519 (627)
...|+++++++|.+. .+.+++.-.+.+ +.|++++|.+... ..+..+++|++||||+|.++ .+...-..+.+.++|
T Consensus 283 Wq~LtelDLS~N~I~-~iDESvKL~Pki-r~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL 357 (490)
T KOG1259|consen 283 WQELTELDLSGNLIT-QIDESVKLAPKL-RRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTL 357 (490)
T ss_pred Hhhhhhccccccchh-hhhhhhhhccce-eEEeccccceeee--hhhhhcccceEeecccchhH-hhhhhHhhhcCEeee
Confidence 345666666666665 455555555555 6677777766532 22667788888888888877 444334456777888
Q ss_pred ECCCCcccccCChhccCCCCCCEEECCCCcCccccc-hhcccCc-CCeeeCcCCcccccCC
Q 037951 520 YLAENFFNGFIPSFFRTSRGIRKVDLSRNNFFGQIP-IFLEALS-LEYLNLSFNDFEGRLP 578 (627)
Q Consensus 520 ~L~~n~i~~~~~~~l~~l~~L~~L~ls~n~l~~~~p-~~~~~~~-L~~L~ls~n~l~~~~p 578 (627)
.|++|.|... .+++.+.+|..||+++|++...-. ..++.++ |+.+.+.+||+.+...
T Consensus 358 ~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vd 416 (490)
T KOG1259|consen 358 KLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVD 416 (490)
T ss_pred ehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccch
Confidence 8888887643 567778888888888888764322 4556666 8888888888876554
|
|
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=99.07 E-value=6.4e-11 Score=104.04 Aligned_cols=107 Identities=36% Similarity=0.455 Sum_probs=31.8
Q ss_pred CCCCCCEEECCCCCCcccCCcccC-CCCCCCEEeCCCCcCcccCCccccCCCCCCEEEccCccccccCCccc-cCCCCCC
Q 037951 71 NLSFLREINLMNNTIQGEIPLEFG-RLRRLETLLLSDNSLVGKIPANLSYCSRLTVLVLGNNKLVGSIPFEF-VSLYKLK 148 (627)
Q Consensus 71 ~l~~L~~L~Ls~~~~~~~~~~~~~-~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~l-~~l~~L~ 148 (627)
+...+++|+|.+|.|+. +. .++ .+.+|+.|++++|.|+. ++ .+..+++|++|++++|+++. +...+ ..+++|+
T Consensus 17 n~~~~~~L~L~~n~I~~-Ie-~L~~~l~~L~~L~Ls~N~I~~-l~-~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~L~ 91 (175)
T PF14580_consen 17 NPVKLRELNLRGNQIST-IE-NLGATLDKLEVLDLSNNQITK-LE-GLPGLPRLKTLDLSNNRISS-ISEGLDKNLPNLQ 91 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS---S--CHHHHHH-TT--
T ss_pred ccccccccccccccccc-cc-chhhhhcCCCEEECCCCCCcc-cc-CccChhhhhhcccCCCCCCc-cccchHHhCCcCC
Confidence 34457777777777763 22 243 46677777777777773 32 46667777777777777773 33333 3567777
Q ss_pred eeeCCCCCCCCC-CCCCCCCCCCCCEEECCCCCCC
Q 037951 149 QLALPMNNLTGG-IPPFLGNLTSLEVVSLAGNPFG 182 (627)
Q Consensus 149 ~L~l~~n~l~~~-~~~~l~~l~~L~~L~L~~n~~~ 182 (627)
+|++++|++... .-..+..+++|++|++.+|.+.
T Consensus 92 ~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 92 ELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred EEECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence 777777776531 1233455666666666666665
|
|
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.05 E-value=3.1e-11 Score=116.02 Aligned_cols=206 Identities=23% Similarity=0.267 Sum_probs=109.5
Q ss_pred cCCCCCCEEeCCCCccccccc--hhhcCCCCCcEeeccCCccccc--CChhhhCCCCCCEEEccCCccccccChh-hcCC
Q 037951 366 GNLVNLYSLQTEENQFTGSIP--KEMGKLLNLQGLDFGGNHFSGE--IPSTLGNLSSLYEIFLGDNNLSGVIPSS-LGNL 440 (627)
Q Consensus 366 ~~l~~L~~L~l~~n~~~~~~~--~~~~~l~~L~~L~L~~n~~~~~--~~~~~~~~~~L~~L~l~~n~~~~~~~~~-l~~l 440 (627)
.++.+|+.+.+.++... ..+ .....|++++.|||+.|-+... +......+|+|+.|+++.|++....... -..+
T Consensus 118 sn~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l 196 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL 196 (505)
T ss_pred hhHHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence 45677888888877665 222 3556678888888888776632 2223456777888888877765222111 1245
Q ss_pred CCCCEEECcCCcCccc-CCccccccccCccEEEccCCccccCCCccccCCCCCCEEEccCCcccccCC--ccccCCCCCC
Q 037951 441 ERLAILEMFANELSGT-IPGDIFNISSLSVSLDLAENHFVGSIPPRIGNLKALRCFDVSNNDLSGEIP--SELGLCSSLE 517 (627)
Q Consensus 441 ~~L~~L~l~~n~l~~~-~~~~~~~~~~ll~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~--~~l~~l~~L~ 517 (627)
+.|+.|.+++|.++.. +-.....++++ +.|++..|...........-+..|++|||++|++. ..+ ...+.++.|+
T Consensus 197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl-~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~~~~~l~~L~ 274 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKDVQWILLTFPSL-EVLYLEANEIILIKATSTKILQTLQELDLSNNNLI-DFDQGYKVGTLPGLN 274 (505)
T ss_pred hhhheEEeccCCCCHHHHHHHHHhCCcH-HHhhhhcccccceecchhhhhhHHhhccccCCccc-ccccccccccccchh
Confidence 5677777777766421 11112233444 56666666422222222334556666666666655 222 2345566666
Q ss_pred EEECCCCccccc-CChh-----ccCCCCCCEEECCCCcCcc--ccchhcccCc-CCeeeCcCCcccc
Q 037951 518 EIYLAENFFNGF-IPSF-----FRTSRGIRKVDLSRNNFFG--QIPIFLEALS-LEYLNLSFNDFEG 575 (627)
Q Consensus 518 ~L~L~~n~i~~~-~~~~-----l~~l~~L~~L~ls~n~l~~--~~p~~~~~~~-L~~L~ls~n~l~~ 575 (627)
.|+++.+.+... .|+. -...++|+.|+++.|++.. ++- .+.... |+.|.+-.|++..
T Consensus 275 ~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~-~l~~l~nlk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 275 QLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLN-HLRTLENLKHLRITLNYLNK 340 (505)
T ss_pred hhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccc-hhhccchhhhhhcccccccc
Confidence 666666665543 2221 2335566666666666642 111 111122 5555555555543
|
|
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.6e-10 Score=125.50 Aligned_cols=129 Identities=29% Similarity=0.342 Sum_probs=84.2
Q ss_pred CCCCEEECCCCCCcccCCcccCCCCCCCEEeCCCCc--CcccCCccccCCCCCCEEEccCccccccCCccccCCCCCCee
Q 037951 73 SFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNS--LVGKIPANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQL 150 (627)
Q Consensus 73 ~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~n~--i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L 150 (627)
..+|...+.+|.+. .++... ..++|++|-+.+|. +.....+.|..++.|++||+++|.--+.+|+.++.+.+||+|
T Consensus 523 ~~~rr~s~~~~~~~-~~~~~~-~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL 600 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIE-HIAGSS-ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYL 600 (889)
T ss_pred hheeEEEEeccchh-hccCCC-CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcc
Confidence 45666666666664 334333 23467777777764 443444456677777777777765555777777777777777
Q ss_pred eCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCccCCCCCccEEEeeCcc
Q 037951 151 ALPMNNLTGGIPPFLGNLTSLEVVSLAGNPFGGNIPDSLGQLKELKTLGIGGNN 204 (627)
Q Consensus 151 ~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~ 204 (627)
+++++.+. .+|..+++++.|.+|++..+.....++.....+.+||+|.+....
T Consensus 601 ~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 601 DLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred cccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc
Confidence 77777776 667777777777777777666544455556667777777776554
|
|
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.00 E-value=6.1e-11 Score=114.02 Aligned_cols=191 Identities=20% Similarity=0.198 Sum_probs=98.9
Q ss_pred cCCCCCCEEEccCccccccCC--ccccCCCCCCeeeCCCCCCCC--CCCCCCCCCCCCCEEECCCCCCCCCCCCc-cCCC
Q 037951 118 SYCSRLTVLVLGNNKLVGSIP--FEFVSLYKLKQLALPMNNLTG--GIPPFLGNLTSLEVVSLAGNPFGGNIPDS-LGQL 192 (627)
Q Consensus 118 ~~l~~L~~L~ls~n~l~~~~~--~~l~~l~~L~~L~l~~n~l~~--~~~~~l~~l~~L~~L~L~~n~~~~~~~~~-l~~l 192 (627)
+++.+|+...|.++.+. ..+ .....+++++.|||++|-+.. .+......+++|+.|+++.|++....... -..+
T Consensus 118 sn~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l 196 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL 196 (505)
T ss_pred hhHHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence 45667777777776665 222 245567777777777775543 12233455666777777766665222111 1134
Q ss_pred CCccEEEeeCccccccCCccccCCCCCcEEEeecccCccCCChhhhhcCCCCceeccCCccccccCCccccCCCCCcEee
Q 037951 193 KELKTLGIGGNNLSGSIPPSIYNLSFLVIFSVSENQMHGSLPPSLGLYFPNLKLFQTNENFFSGSIPISLSNASKLEYVE 272 (627)
Q Consensus 193 ~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 272 (627)
++|+.|.++.|.++. .-..++...+|+++.|++..|............+..|+.|+
T Consensus 197 ~~lK~L~l~~CGls~------------------------k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~Ld 252 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSW------------------------KDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELD 252 (505)
T ss_pred hhhheEEeccCCCCH------------------------HHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhcc
Confidence 555555555555542 22222233355555555555532222222233455666677
Q ss_pred cccccccccCc-cCcCCCCCcCEEeccCccCCCCCCCCccccccCCCCCcccEEEccCcccc
Q 037951 273 IASNSFFGKLS-VNFGGMKNLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFR 333 (627)
Q Consensus 273 l~~~~~~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~ 333 (627)
|++|.+..... ...+.++.|+.|.++.+.+.++.....+.......+++|+.|++..|++.
T Consensus 253 Ls~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~ 314 (505)
T KOG3207|consen 253 LSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR 314 (505)
T ss_pred ccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccc
Confidence 76666543321 22456666777777766666544332222333445556666666666553
|
|
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.5e-09 Score=95.38 Aligned_cols=109 Identities=28% Similarity=0.383 Sum_probs=28.8
Q ss_pred cCCCCCCCEEeCCCCcCcccCCcccc-CCCCCCEEEccCccccccCCccccCCCCCCeeeCCCCCCCCCCCCCC-CCCCC
Q 037951 93 FGRLRRLETLLLSDNSLVGKIPANLS-YCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTGGIPPFL-GNLTS 170 (627)
Q Consensus 93 ~~~l~~L~~L~L~~n~i~~~~~~~~~-~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l-~~l~~ 170 (627)
+.+..+++.|+|++|.|+.+ +.++ .+.+|++|++++|.++. + +.+..+++|++|++++|.++. +.+.+ ..+++
T Consensus 15 ~~n~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~-l-~~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~ 89 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITK-L-EGLPGLPRLKTLDLSNNRISS-ISEGLDKNLPN 89 (175)
T ss_dssp -----------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S--CHHHHHH-TT
T ss_pred cccccccccccccccccccc--cchhhhhcCCCEEECCCCCCcc-c-cCccChhhhhhcccCCCCCCc-cccchHHhCCc
Confidence 33455677777777777632 2344 46677777777777763 2 246666677777777777663 22223 24666
Q ss_pred CCEEECCCCCCCCCC-CCccCCCCCccEEEeeCcccc
Q 037951 171 LEVVSLAGNPFGGNI-PDSLGQLKELKTLGIGGNNLS 206 (627)
Q Consensus 171 L~~L~L~~n~~~~~~-~~~l~~l~~L~~L~l~~n~~~ 206 (627)
|++|++++|++.... -..+..+++|+.|++.+|+++
T Consensus 90 L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 90 LQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp --EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred CCEEECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence 666666666665321 123344455555555555544
|
|
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.9e-09 Score=118.72 Aligned_cols=274 Identities=22% Similarity=0.234 Sum_probs=153.2
Q ss_pred CCcCEEeccCccCCCCCCCCccccccCCCCCcccEEEccCcc--cccccchhHHhccccccEEEeecccccccCcccccC
Q 037951 290 KNLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQ--FRGALPHSIANLSSQLQILVLGTNQLYGSIPSGIGN 367 (627)
Q Consensus 290 ~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~--~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 367 (627)
...+.+.+-+|.+..+. .-..++.|++|-+.+|. +. .++..+....+.|+.||+++|.--+.+|..++.
T Consensus 523 ~~~rr~s~~~~~~~~~~--------~~~~~~~L~tLll~~n~~~l~-~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~ 593 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIEHIA--------GSSENPKLRTLLLQRNSDWLL-EISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGE 593 (889)
T ss_pred hheeEEEEeccchhhcc--------CCCCCCccceEEEeecchhhh-hcCHHHHhhCcceEEEECCCCCccCcCChHHhh
Confidence 44555555555443322 22334567778777775 44 444444443347888888877665678888888
Q ss_pred CCCCCEEeCCCCccccccchhhcCCCCCcEeeccCCcccccCChhhhCCCCCCEEEccCCcc--ccccChhhcCCCCCCE
Q 037951 368 LVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLGDNNL--SGVIPSSLGNLERLAI 445 (627)
Q Consensus 368 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~--~~~~~~~l~~l~~L~~ 445 (627)
+-+|+.|++++..+. .+|..++.+..|.+|++..+.....++.....+++|++|.+..-.. +......+..+++|+.
T Consensus 594 Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ 672 (889)
T KOG4658|consen 594 LVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLEN 672 (889)
T ss_pred hhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhh
Confidence 888888888888877 6788888888888888887776656666666688888888765442 2222223445555555
Q ss_pred EECcCCcCcc-cCCccccccccCccEEEccCCccccCCCccccCCCCCCEEEccCCcccccCCccccC------CCCCCE
Q 037951 446 LEMFANELSG-TIPGDIFNISSLSVSLDLAENHFVGSIPPRIGNLKALRCFDVSNNDLSGEIPSELGL------CSSLEE 518 (627)
Q Consensus 446 L~l~~n~l~~-~~~~~~~~~~~ll~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~------l~~L~~ 518 (627)
+......... .-......+.+..+.+.+.++... ..+..+..+.+|+.|.+.+|.+.......... ++++..
T Consensus 673 ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~~~~~-~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~ 751 (889)
T KOG4658|consen 673 LSITISSVLLLEDLLGMTRLRSLLQSLSIEGCSKR-TLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSK 751 (889)
T ss_pred heeecchhHhHhhhhhhHHHHHHhHhhhhcccccc-eeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHH
Confidence 5543332200 000112222222223333333332 34455677888888888888876322211111 122333
Q ss_pred EECCCCcccccCChhccCCCCCCEEECCCCcCccccchhcccCc-CCeeeCcCCcccc
Q 037951 519 IYLAENFFNGFIPSFFRTSRGIRKVDLSRNNFFGQIPIFLEALS-LEYLNLSFNDFEG 575 (627)
Q Consensus 519 L~L~~n~i~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~~~-L~~L~ls~n~l~~ 575 (627)
+.+.++.... .+.+..-.++|+.|.+.+|.....+........ ++.+-+..+.+.+
T Consensus 752 ~~~~~~~~~r-~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~ 808 (889)
T KOG4658|consen 752 VSILNCHMLR-DLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEG 808 (889)
T ss_pred HHhhcccccc-ccchhhccCcccEEEEecccccccCCCHHHHhhhcccEEeccccccc
Confidence 3333332211 222223457888888888877665544444444 5555555555544
|
|
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=98.79 E-value=4.1e-09 Score=75.97 Aligned_cols=61 Identities=31% Similarity=0.456 Sum_probs=43.8
Q ss_pred CCCCEEEccCCcccccCCccccCCCCCCEEECCCCcccccCChhccCCCCCCEEECCCCcC
Q 037951 490 KALRCFDVSNNDLSGEIPSELGLCSSLEEIYLAENFFNGFIPSFFRTSRGIRKVDLSRNNF 550 (627)
Q Consensus 490 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~ls~n~l 550 (627)
++|++|++++|+++...+..|..+++|++|++++|.++...+..|.++++|+.|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4567777777777744445677777777777777777777777777777777777777764
|
... |
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=98.76 E-value=4.9e-09 Score=75.56 Aligned_cols=59 Identities=37% Similarity=0.436 Sum_probs=36.4
Q ss_pred CCCEEECCCCCCcccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEEccCcc
Q 037951 74 FLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLTVLVLGNNK 132 (627)
Q Consensus 74 ~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ls~n~ 132 (627)
+|++|++++|+++...++.|.++++|++|++++|.++...+..|.++++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 45666666666664444566666666666666666665555566666666666666664
|
... |
| >KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.68 E-value=3.2e-09 Score=109.65 Aligned_cols=150 Identities=32% Similarity=0.362 Sum_probs=81.8
Q ss_pred CCCCCEEECCCCCCcccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEEccCccccccCCccccCCCCCCeee
Q 037951 72 LSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLA 151 (627)
Q Consensus 72 l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ 151 (627)
+..++.+++..|.+.. .-..+..+++|+.|++.+|+|.. +...+..+++|++|++++|.|+.. ..+..++.|+.|+
T Consensus 71 l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~ 146 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELN 146 (414)
T ss_pred hHhHHhhccchhhhhh-hhcccccccceeeeeccccchhh-cccchhhhhcchheeccccccccc--cchhhccchhhhe
Confidence 4455555566666552 22335566667777777776663 222255666677777777766532 2355555566666
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCC-CccCCCCCccEEEeeCccccccCCccccCCCCCcEEEeecccCc
Q 037951 152 LPMNNLTGGIPPFLGNLTSLEVVSLAGNPFGGNIP-DSLGQLKELKTLGIGGNNLSGSIPPSIYNLSFLVIFSVSENQMH 230 (627)
Q Consensus 152 l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~ 230 (627)
+++|.+.. ...+..++.|+.+++++|++....+ . ...+.+++.+.+.+|.+.. ...+..+..+..+++..|.++
T Consensus 147 l~~N~i~~--~~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~--i~~~~~~~~l~~~~l~~n~i~ 221 (414)
T KOG0531|consen 147 LSGNLISD--ISGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIRE--IEGLDLLKKLVLLSLLDNKIS 221 (414)
T ss_pred eccCcchh--ccCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhc--ccchHHHHHHHHhhcccccce
Confidence 66666652 2334446666666666666664322 1 3555666666666666542 222333333333344444443
|
|
| >KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.62 E-value=4.1e-09 Score=108.78 Aligned_cols=129 Identities=26% Similarity=0.291 Sum_probs=62.0
Q ss_pred CCCCcCEEeccCccCCCCCCCCccccccCCCCCcccEEEccCcccccccchhHHhccccccEEEeecccccccCcccccC
Q 037951 288 GMKNLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLSSQLQILVLGTNQLYGSIPSGIGN 367 (627)
Q Consensus 288 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 367 (627)
.+..++.+.+..|.+... ...+..+.+|+.|++.+|++..... .+..+. +|++|++++|.|+... .+..
T Consensus 70 ~l~~l~~l~l~~n~i~~~-------~~~l~~~~~l~~l~l~~n~i~~i~~-~l~~~~-~L~~L~ls~N~I~~i~--~l~~ 138 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAKI-------LNHLSKLKSLEALDLYDNKIEKIEN-LLSSLV-NLQVLDLSFNKITKLE--GLST 138 (414)
T ss_pred HhHhHHhhccchhhhhhh-------hcccccccceeeeeccccchhhccc-chhhhh-cchheecccccccccc--chhh
Confidence 344555555666655441 1234555666666666666653222 122232 5555666655554322 2334
Q ss_pred CCCCCEEeCCCCccccccchhhcCCCCCcEeeccCCcccccCChh-hhCCCCCCEEEccCCccc
Q 037951 368 LVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIPST-LGNLSSLYEIFLGDNNLS 430 (627)
Q Consensus 368 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~-~~~~~~L~~L~l~~n~~~ 430 (627)
++.|+.|++.+|.+... ..+..++.|+.+++++|++...-+ . ...+.+++.+++.+|.+.
T Consensus 139 l~~L~~L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~-~~~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 139 LTLLKELNLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIEN-DELSELISLEELDLGGNSIR 199 (414)
T ss_pred ccchhhheeccCcchhc--cCCccchhhhcccCCcchhhhhhh-hhhhhccchHHHhccCCchh
Confidence 44455555555555421 123335555555555555542221 1 234455555555555544
|
|
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.49 E-value=2.9e-09 Score=97.49 Aligned_cols=160 Identities=20% Similarity=0.163 Sum_probs=86.1
Q ss_pred CCCCCcEeecccccccccCccCcCCCCCcCEEeccCcc-CCCCCCCCccccccCCCCCcccEEEccCccccc-ccchhHH
Q 037951 264 NASKLEYVEIASNSFFGKLSVNFGGMKNLSYLILEYNN-LGSGESDEMGFMNSLANCSKLQVLSLGGNQFRG-ALPHSIA 341 (627)
Q Consensus 264 ~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~-~~~~~~~ 341 (627)
.|.+|+.+.+.++++.+.+...+++-.+|+.++++.+. ++.. +....+.+|+.|.+|+++.|.... .....+.
T Consensus 208 ~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n-----~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~ 282 (419)
T KOG2120|consen 208 QCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTEN-----ALQLLLSSCSRLDELNLSWCFLFTEKVTVAVA 282 (419)
T ss_pred HHHhhhhccccccccCcHHHHHHhccccceeeccccccccchh-----HHHHHHHhhhhHhhcCchHhhccchhhhHHHh
Confidence 44444444444444444444444444555555554432 1110 122234555666666666654432 2223344
Q ss_pred hccccccEEEeeccccc---ccCcccccCCCCCCEEeCCCCc-cccccchhhcCCCCCcEeeccCCcccccCChh---hh
Q 037951 342 NLSSQLQILVLGTNQLY---GSIPSGIGNLVNLYSLQTEENQ-FTGSIPKEMGKLLNLQGLDFGGNHFSGEIPST---LG 414 (627)
Q Consensus 342 ~~~~~L~~L~l~~n~l~---~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~---~~ 414 (627)
....+|+.|+++++.-. ..+......+++|.+||+++|. ++......|..++.|++|.++.|.. .+|.. +.
T Consensus 283 hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~ 360 (419)
T KOG2120|consen 283 HISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETLLELN 360 (419)
T ss_pred hhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcC--CChHHeeeec
Confidence 44456777777765321 1111123457788888888773 4444444566778888888888864 33443 45
Q ss_pred CCCCCCEEEccCCccc
Q 037951 415 NLSSLYEIFLGDNNLS 430 (627)
Q Consensus 415 ~~~~L~~L~l~~n~~~ 430 (627)
..|+|.+|++.++--.
T Consensus 361 s~psl~yLdv~g~vsd 376 (419)
T KOG2120|consen 361 SKPSLVYLDVFGCVSD 376 (419)
T ss_pred cCcceEEEEeccccCc
Confidence 6788888888776543
|
|
| >KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.43 E-value=4.5e-09 Score=107.42 Aligned_cols=123 Identities=26% Similarity=0.264 Sum_probs=73.1
Q ss_pred CCEEECcCCcCcccCCccccccccCccEEEccCCccccCCCccccCCCCCCEEEccCCcccccCCcc-ccCCCCCCEEEC
Q 037951 443 LAILEMFANELSGTIPGDIFNISSLSVSLDLAENHFVGSIPPRIGNLKALRCFDVSNNDLSGEIPSE-LGLCSSLEEIYL 521 (627)
Q Consensus 443 L~~L~l~~n~l~~~~~~~~~~~~~ll~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~-l~~l~~L~~L~L 521 (627)
|.+-+.++|.+. .+...+.-++.+ +.|++++|++... +.+..++.|++|||++|.+. .+|.. ...+. |+.|++
T Consensus 166 L~~a~fsyN~L~-~mD~SLqll~al-e~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~l 239 (1096)
T KOG1859|consen 166 LATASFSYNRLV-LMDESLQLLPAL-ESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNL 239 (1096)
T ss_pred HhhhhcchhhHH-hHHHHHHHHHHh-hhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhhh-heeeee
Confidence 333444444443 333333334444 5556666665532 24667777888888888776 55542 33344 788888
Q ss_pred CCCcccccCChhccCCCCCCEEECCCCcCccc-cchhcccCc-CCeeeCcCCcc
Q 037951 522 AENFFNGFIPSFFRTSRGIRKVDLSRNNFFGQ-IPIFLEALS-LEYLNLSFNDF 573 (627)
Q Consensus 522 ~~n~i~~~~~~~l~~l~~L~~L~ls~n~l~~~-~p~~~~~~~-L~~L~ls~n~l 573 (627)
++|.++.. .++.++.+|+.||+++|-+.+. --..++.+. |+.|.+.+||+
T Consensus 240 rnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 240 RNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred cccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 88877743 4567777888888888877652 123344444 67777777766
|
|
| >PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] | Back alignment and domain information |
|---|
Probab=98.41 E-value=3.6e-07 Score=59.98 Aligned_cols=40 Identities=50% Similarity=1.023 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCCCCCC--CCCCCcccceee
Q 037951 16 EGDLAALQAFKSMISHDPQGILNSWNDS--RHFCEWEGITCD 55 (627)
Q Consensus 16 ~~~~~~l~~~~~~~~~~~~~~~~~w~~~--~~~c~~~~~~c~ 55 (627)
++|+++|++||.++..+|...+.+|... .++|.|.||+||
T Consensus 2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~~~~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 2 NQDRQALLAFKKSLNNDPSGVLSSWNPSSDSDPCSWSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHHCTT-SC-CCCTT--TT--S-CCCSTTEEE-
T ss_pred cHHHHHHHHHHHhcccccCcccccCCCcCCCCCeeeccEEeC
Confidence 5799999999999987788899999987 799999999995
|
LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A. |
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.37 E-value=9.5e-09 Score=94.20 Aligned_cols=181 Identities=17% Similarity=0.083 Sum_probs=99.0
Q ss_pred CCcEEEeecccCccCCChhhhhcCCCCceeccCCccccccCCccccCCCCCcEeeccccccccc--CccCcCCCCCcCEE
Q 037951 218 FLVIFSVSENQMHGSLPPSLGLYFPNLKLFQTNENFFSGSIPISLSNASKLEYVEIASNSFFGK--LSVNFGGMKNLSYL 295 (627)
Q Consensus 218 ~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~--~~~~l~~l~~L~~L 295 (627)
.|+.+|++...++..-...+...+.+|+.+.+.++.+.+.+...++.-.+|+.++++.+.-... ..-.+.+++.|.+|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 4667777766666444444555566777777777777666666666667777777766543211 11224566677777
Q ss_pred eccCccCCCCCCCCccccccCCCCCcccEEEccCccc--ccccchhHHhccccccEEEeeccc-ccccCcccccCCCCCC
Q 037951 296 ILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQF--RGALPHSIANLSSQLQILVLGTNQ-LYGSIPSGIGNLVNLY 372 (627)
Q Consensus 296 ~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~--~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~ 372 (627)
++++|.+...... ... -.--++|+.|+++|+.- ...-.+.+..-.+++..||+++|. ++......|..++.|+
T Consensus 266 NlsWc~l~~~~Vt--v~V--~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~ 341 (419)
T KOG2120|consen 266 NLSWCFLFTEKVT--VAV--AHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQ 341 (419)
T ss_pred CchHhhccchhhh--HHH--hhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchhe
Confidence 7777665542211 011 11125666677766521 111122233333467777777663 3333333455666777
Q ss_pred EEeCCCCccccccchh---hcCCCCCcEeeccCCc
Q 037951 373 SLQTEENQFTGSIPKE---MGKLLNLQGLDFGGNH 404 (627)
Q Consensus 373 ~L~l~~n~~~~~~~~~---~~~l~~L~~L~L~~n~ 404 (627)
+|.++.|.. .+|+. +...|+|.+||+.++-
T Consensus 342 ~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 342 HLSLSRCYD--IIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred eeehhhhcC--CChHHeeeeccCcceEEEEecccc
Confidence 777776643 23332 3455667777766654
|
|
| >KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.27 E-value=2.6e-08 Score=102.01 Aligned_cols=157 Identities=25% Similarity=0.242 Sum_probs=89.6
Q ss_pred ccccCCCCCCCEEECCCCCCcccCCcccCCC-C--------------------------------CCCEEeCCCCcCccc
Q 037951 66 SPQIGNLSFLREINLMNNTIQGEIPLEFGRL-R--------------------------------RLETLLLSDNSLVGK 112 (627)
Q Consensus 66 ~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l-~--------------------------------~L~~L~L~~n~i~~~ 112 (627)
|-.+..++.||+|.+.++.+.. . ..+..+ . .|.+.+.++|.+. .
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~-~-~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~-~ 178 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLST-A-KGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLV-L 178 (1096)
T ss_pred CceeccccceeeEEecCcchhh-h-hhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHH-h
Confidence 4466778888888888887642 1 111111 1 2333444445444 3
Q ss_pred CCccccCCCCCCEEEccCccccccCCccccCCCCCCeeeCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCccCCC
Q 037951 113 IPANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTGGIPPFLGNLTSLEVVSLAGNPFGGNIPDSLGQL 192 (627)
Q Consensus 113 ~~~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l 192 (627)
+..++.-++.|+.|+|++|+++. ...+..+++|++||+++|.+....--.-..+. |+.|.+++|.++.. ..+.++
T Consensus 179 mD~SLqll~ale~LnLshNk~~~--v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL--~gie~L 253 (1096)
T KOG1859|consen 179 MDESLQLLPALESLNLSHNKFTK--VDNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTL--RGIENL 253 (1096)
T ss_pred HHHHHHHHHHhhhhccchhhhhh--hHHHHhcccccccccccchhccccccchhhhh-heeeeecccHHHhh--hhHHhh
Confidence 44455556667777777777662 23666777777777777776632222222333 77777777766633 346666
Q ss_pred CCccEEEeeCcccccc-CCccccCCCCCcEEEeecccCc
Q 037951 193 KELKTLGIGGNNLSGS-IPPSIYNLSFLVIFSVSENQMH 230 (627)
Q Consensus 193 ~~L~~L~l~~n~~~~~-~~~~l~~l~~L~~L~l~~n~l~ 230 (627)
++|+.||+++|-+.+. --..++.+..|+.|.+.||.+.
T Consensus 254 ksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 254 KSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred hhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 7777777777665531 1123445556666677776664
|
|
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.25 E-value=1.3e-07 Score=86.81 Aligned_cols=64 Identities=19% Similarity=0.126 Sum_probs=31.7
Q ss_pred CCCCcEeecccccccccC-ccCcCCCCCcCEEeccCccCCCCCCCCccccccCCCCCcccEEEcc
Q 037951 265 ASKLEYVEIASNSFFGKL-SVNFGGMKNLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLG 328 (627)
Q Consensus 265 ~~~L~~L~l~~~~~~~~~-~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~ 328 (627)
++.+..|.++.+++..-. .+.+.+++.|..|.++++.+.+.-.......--+..+++++.|+=+
T Consensus 223 ~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGs 287 (418)
T KOG2982|consen 223 FPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGS 287 (418)
T ss_pred CCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecCc
Confidence 444445555555543321 2335666666666666665544222221222234556666666544
|
|
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.22 E-value=2.8e-07 Score=84.75 Aligned_cols=185 Identities=18% Similarity=0.174 Sum_probs=85.9
Q ss_pred CCCCCeeeCCCCCCCC--CCCCCCCCCCCCCEEECCCCCCCCCCCCccCCCCCccEEEeeCcccccc-CCccccCCCCCc
Q 037951 144 LYKLKQLALPMNNLTG--GIPPFLGNLTSLEVVSLAGNPFGGNIPDSLGQLKELKTLGIGGNNLSGS-IPPSIYNLSFLV 220 (627)
Q Consensus 144 l~~L~~L~l~~n~l~~--~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~-~~~~l~~l~~L~ 220 (627)
.+.++.+||.+|.++. .+...+.++|.|+.|+++.|.+...+...-..+++|++|-+.+..+.-. ....+..+|.++
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt 149 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT 149 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence 3445555555555542 2333345556666666666655532221113445666666655554322 122334555566
Q ss_pred EEEeecccCccC--CChhhhhcCCCCceeccCCccccc--cCCccccCCCCCcEeecccccccccC-ccCcCCCCCcCEE
Q 037951 221 IFSVSENQMHGS--LPPSLGLYFPNLKLFQTNENFFSG--SIPISLSNASKLEYVEIASNSFFGKL-SVNFGGMKNLSYL 295 (627)
Q Consensus 221 ~L~l~~n~l~~~--~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~l~~~~~~~~~-~~~l~~l~~L~~L 295 (627)
.+.++.|.+.-. -........+.++++....|.+.- .....-.-++++..+-+..+.+.... ...+..++.+-.|
T Consensus 150 elHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~L 229 (418)
T KOG2982|consen 150 ELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCL 229 (418)
T ss_pred hhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhh
Confidence 666655533210 000111113344455444443221 00011123455666666666553322 2234455555566
Q ss_pred eccCccCCCCCCCCccccccCCCCCcccEEEccCcccc
Q 037951 296 ILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFR 333 (627)
Q Consensus 296 ~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~ 333 (627)
.+..++|.+ |.-...+..++.|..|.+.++.+.
T Consensus 230 nL~~~~ids-----wasvD~Ln~f~~l~dlRv~~~Pl~ 262 (418)
T KOG2982|consen 230 NLGANNIDS-----WASVDALNGFPQLVDLRVSENPLS 262 (418)
T ss_pred hhccccccc-----HHHHHHHcCCchhheeeccCCccc
Confidence 666666554 233445666666666666666554
|
|
| >COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.21 E-value=3e-07 Score=83.46 Aligned_cols=87 Identities=18% Similarity=0.186 Sum_probs=40.5
Q ss_pred CCcccEEEccCcccccccchhHHh----ccccccEEEeeccccccc-----CcccccCCCCCCEEeCCCCccccc----c
Q 037951 319 CSKLQVLSLGGNQFRGALPHSIAN----LSSQLQILVLGTNQLYGS-----IPSGIGNLVNLYSLQTEENQFTGS----I 385 (627)
Q Consensus 319 ~~~L~~L~l~~n~~~~~~~~~~~~----~~~~L~~L~l~~n~l~~~-----~~~~~~~l~~L~~L~l~~n~~~~~----~ 385 (627)
-|.|+.+....|++. ..+..... ....|+.+.+..|.|... +-..+..+.+|+.||+..|.++.. +
T Consensus 156 kp~Le~vicgrNRle-ngs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~L 234 (388)
T COG5238 156 KPKLEVVICGRNRLE-NGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYL 234 (388)
T ss_pred CCCceEEEeccchhc-cCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHH
Confidence 355666666666554 22211110 001455555555544311 111233455666666666665522 2
Q ss_pred chhhcCCCCCcEeeccCCccc
Q 037951 386 PKEMGKLLNLQGLDFGGNHFS 406 (627)
Q Consensus 386 ~~~~~~l~~L~~L~L~~n~~~ 406 (627)
..+++.++.|+.|.+.+|-++
T Consensus 235 a~al~~W~~lrEL~lnDClls 255 (388)
T COG5238 235 ADALCEWNLLRELRLNDCLLS 255 (388)
T ss_pred HHHhcccchhhhccccchhhc
Confidence 233445555666666665554
|
|
| >KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.17 E-value=9.5e-08 Score=77.46 Aligned_cols=79 Identities=22% Similarity=0.349 Sum_probs=42.2
Q ss_pred EEEccCCccccCCCccc-cCCCCCCEEEccCCcccccCCccccCCCCCCEEECCCCcccccCChhccCCCCCCEEECCCC
Q 037951 470 SLDLAENHFVGSIPPRI-GNLKALRCFDVSNNDLSGEIPSELGLCSSLEEIYLAENFFNGFIPSFFRTSRGIRKVDLSRN 548 (627)
Q Consensus 470 ~L~l~~n~l~~~~~~~l-~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~ls~n 548 (627)
..++++|.+.. .|+.| ...+.++.|++++|.+. .+|.++..++.|+.|+++.|++. ..|+.+..+.+|..||..+|
T Consensus 57 ~i~ls~N~fk~-fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~n 133 (177)
T KOG4579|consen 57 KISLSDNGFKK-FPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPEN 133 (177)
T ss_pred EEecccchhhh-CCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCC
Confidence 34455554442 22222 23345566666666665 55666666666666666666665 34444444556666665555
Q ss_pred cCc
Q 037951 549 NFF 551 (627)
Q Consensus 549 ~l~ 551 (627)
.+.
T Consensus 134 a~~ 136 (177)
T KOG4579|consen 134 ARA 136 (177)
T ss_pred ccc
Confidence 554
|
|
| >COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.15 E-value=1.3e-07 Score=85.68 Aligned_cols=42 Identities=21% Similarity=0.335 Sum_probs=22.5
Q ss_pred ccCCCCCCeeeCCCCCCCCCCCCC----CCCCCCCCEEECCCCCCC
Q 037951 141 FVSLYKLKQLALPMNNLTGGIPPF----LGNLTSLEVVSLAGNPFG 182 (627)
Q Consensus 141 l~~l~~L~~L~l~~n~l~~~~~~~----l~~l~~L~~L~L~~n~~~ 182 (627)
+-+|++|+..+|++|.+....|.. +++-+.|.+|.+++|.+.
T Consensus 88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlG 133 (388)
T COG5238 88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLG 133 (388)
T ss_pred HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCC
Confidence 345555666666666555433332 344556666666666544
|
|
| >KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.11 E-value=2.8e-07 Score=74.74 Aligned_cols=141 Identities=18% Similarity=0.227 Sum_probs=97.9
Q ss_pred EEEccCCccccCCCcc---ccCCCCCCEEEccCCcccccCCcccc-CCCCCCEEECCCCcccccCChhccCCCCCCEEEC
Q 037951 470 SLDLAENHFVGSIPPR---IGNLKALRCFDVSNNDLSGEIPSELG-LCSSLEEIYLAENFFNGFIPSFFRTSRGIRKVDL 545 (627)
Q Consensus 470 ~L~l~~n~l~~~~~~~---l~~l~~L~~L~Ls~n~l~~~~~~~l~-~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l 545 (627)
.++++.|++- .+++. +.....|+..+|++|.+. ..|..|. ..+..+.|++++|.|.. +|+.+..++.|+.|++
T Consensus 31 ~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neisd-vPeE~Aam~aLr~lNl 107 (177)
T KOG4579|consen 31 FLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEISD-VPEELAAMPALRSLNL 107 (177)
T ss_pred hcccccchhh-HHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhhh-chHHHhhhHHhhhccc
Confidence 4566666553 22222 345567788899999998 5666654 45689999999999985 6767999999999999
Q ss_pred CCCcCccccchhcccCc-CCeeeCcCCcccccCCCCCccCCCCccccccCCCCcccCCCCCCCCCC-CCCCCCCCCCCCC
Q 037951 546 SRNNFFGQIPIFLEALS-LEYLNLSFNDFEGRLPTRGIFANASAISVGGCNRLCGGIHELQLPKCP-EHESSRGGDLPGS 623 (627)
Q Consensus 546 s~n~l~~~~p~~~~~~~-L~~L~ls~n~l~~~~p~~~~~~~l~~l~~~~n~~l~~~~~~l~i~~c~-~~~~~~~~~~p~~ 623 (627)
+.|++. ..|..+..+. +..||.-+|... .+|....++++..+.=.||.-+.+ .|+ ++|++...++|.+
T Consensus 108 ~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl~~s~~~al~~lgnepl~~--------~~~~klqa~kp~~l~~s 177 (177)
T KOG4579|consen 108 RFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDLFYSSLPALIKLGNEPLGD--------ETKKKLQALKPEKLDLS 177 (177)
T ss_pred ccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHHhccccHHHHHhcCCcccc--------cCcccccccCCCCCCCC
Confidence 999998 5555555565 888888888765 666555556665444445533432 254 6888877777653
|
|
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Probab=98.00 E-value=2.4e-05 Score=77.79 Aligned_cols=56 Identities=11% Similarity=0.119 Sum_probs=29.5
Q ss_pred cCCCCCCEEeCCCCccccccchhhcCCCCCcEeeccCCcccccCChhhhCCCCCCEEEccCC
Q 037951 366 GNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLGDN 427 (627)
Q Consensus 366 ~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n 427 (627)
..+..++.|++++|.++ .+|. + ..+|+.|.+++|.-...+|..+ .++|++|++++|
T Consensus 49 ~~~~~l~~L~Is~c~L~-sLP~-L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~C 104 (426)
T PRK15386 49 EEARASGRLYIKDCDIE-SLPV-L--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHC 104 (426)
T ss_pred HHhcCCCEEEeCCCCCc-ccCC-C--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCc
Confidence 34466666666666555 3341 1 2346666666644333444433 245666666665
|
|
| >KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.94 E-value=1.7e-05 Score=69.32 Aligned_cols=105 Identities=30% Similarity=0.294 Sum_probs=64.6
Q ss_pred CCCCEEeCCCCcCcccCCccccCCCCCCEEEccCccccccCCccccCCCCCCeeeCCCCCCCCC-CCCCCCCCCCCCEEE
Q 037951 97 RRLETLLLSDNSLVGKIPANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTGG-IPPFLGNLTSLEVVS 175 (627)
Q Consensus 97 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~ 175 (627)
.+...+||++|.+.. + ..|..++.|.+|.+++|+|+.+.|.--..+++|+.|.+.+|.+... ...-+..++.|++|.
T Consensus 42 d~~d~iDLtdNdl~~-l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRK-L-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred cccceecccccchhh-c-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence 455667777776652 2 2466667777777777777755555555566677777777766531 123356677778887
Q ss_pred CCCCCCCCCC---CCccCCCCCccEEEeeCc
Q 037951 176 LAGNPFGGNI---PDSLGQLKELKTLGIGGN 203 (627)
Q Consensus 176 L~~n~~~~~~---~~~l~~l~~L~~L~l~~n 203 (627)
+-+|.++..- -..+..+++|++||+.+-
T Consensus 120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred ecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 7777776321 124556677777776654
|
|
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
Probab=97.91 E-value=9e-06 Score=53.38 Aligned_cols=36 Identities=33% Similarity=0.553 Sum_probs=18.0
Q ss_pred CCCEEEccCCcccccCCccccCCCCCCEEECCCCccc
Q 037951 491 ALRCFDVSNNDLSGEIPSELGLCSSLEEIYLAENFFN 527 (627)
Q Consensus 491 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~i~ 527 (627)
+|++|++++|+++ .+|..++++++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 4555555555555 34444555555555555555554
|
... |
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Probab=97.89 E-value=4.9e-05 Score=75.58 Aligned_cols=72 Identities=14% Similarity=0.111 Sum_probs=45.1
Q ss_pred cccEEEeecccccccCcccccCCCCCCEEeCCCCccccccchhhcCCCCCcEeeccCCcccccCChhhhCCCCCCEEEcc
Q 037951 346 QLQILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLG 425 (627)
Q Consensus 346 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~ 425 (627)
+++.|++++|.++ .+|. -..+|+.|.+++|.-...+|+.+ .++|+.|++++|.....+| ++|+.|+++
T Consensus 53 ~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP------~sLe~L~L~ 120 (426)
T PRK15386 53 ASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLP------ESVRSLEIK 120 (426)
T ss_pred CCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccc------cccceEEeC
Confidence 7888888888776 3442 23468888888764433566554 2578888888873222333 356677776
Q ss_pred CCcc
Q 037951 426 DNNL 429 (627)
Q Consensus 426 ~n~~ 429 (627)
.+..
T Consensus 121 ~n~~ 124 (426)
T PRK15386 121 GSAT 124 (426)
T ss_pred CCCC
Confidence 5543
|
|
| >KOG4341 consensus F-box protein containing LRR [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.81 E-value=9.2e-07 Score=85.35 Aligned_cols=278 Identities=15% Similarity=0.055 Sum_probs=140.4
Q ss_pred CcCEEeccCccCCCCCCCCccccccCCCCCcccEEEccCcc-cccccchhHHhccccccEEEeecc-cccccCcc-cccC
Q 037951 291 NLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQ-FRGALPHSIANLSSQLQILVLGTN-QLYGSIPS-GIGN 367 (627)
Q Consensus 291 ~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~-~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~-~~~~ 367 (627)
.|+.|.+.++.-.... .......+++++++|.+.+|. +++..-..+....+.+++|++..| .++...-. ....
T Consensus 139 ~lk~LSlrG~r~v~~s----slrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~g 214 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDS----SLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEG 214 (483)
T ss_pred ccccccccccccCCcc----hhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHh
Confidence 4556666555332211 223344567777777777764 344444445555557777777775 33322222 2345
Q ss_pred CCCCCEEeCCCCc-cccc-cchhhcCCCCCcEeeccCCcccc--cCChhhhCCCCCCEEEccCCc-cccccCh-hhcCCC
Q 037951 368 LVNLYSLQTEENQ-FTGS-IPKEMGKLLNLQGLDFGGNHFSG--EIPSTLGNLSSLYEIFLGDNN-LSGVIPS-SLGNLE 441 (627)
Q Consensus 368 l~~L~~L~l~~n~-~~~~-~~~~~~~l~~L~~L~L~~n~~~~--~~~~~~~~~~~L~~L~l~~n~-~~~~~~~-~l~~l~ 441 (627)
+++|++++++.|. +++. +.....++..++.+.+.||.-.+ .+...-..+..+.++++.+|. ++..... .-..+.
T Consensus 215 C~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~ 294 (483)
T KOG4341|consen 215 CRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCH 294 (483)
T ss_pred hhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhh
Confidence 6777777777763 3331 12234456666666666654221 011111235556666666664 2222111 112455
Q ss_pred CCCEEECcCCcCcccCC-ccccc-cccCccEEEccCCccccC-CCccc-cCCCCCCEEEccCCccc--ccCCccccCCCC
Q 037951 442 RLAILEMFANELSGTIP-GDIFN-ISSLSVSLDLAENHFVGS-IPPRI-GNLKALRCFDVSNNDLS--GEIPSELGLCSS 515 (627)
Q Consensus 442 ~L~~L~l~~n~l~~~~~-~~~~~-~~~ll~~L~l~~n~l~~~-~~~~l-~~l~~L~~L~Ls~n~l~--~~~~~~l~~l~~ 515 (627)
.|+.|..+++...+..+ ..++. ...+ +.+.++.|+.-+. -...+ .+++.|+.+++..+... +.+...-.+++.
T Consensus 295 ~lq~l~~s~~t~~~d~~l~aLg~~~~~L-~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~ 373 (483)
T KOG4341|consen 295 ALQVLCYSSCTDITDEVLWALGQHCHNL-QVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPR 373 (483)
T ss_pred HhhhhcccCCCCCchHHHHHHhcCCCce-EEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCch
Confidence 66777776654322111 12222 2333 6667766653211 11111 35677777777777543 223333356777
Q ss_pred CCEEECCCCcccccC-----ChhccCCCCCCEEECCCCcCcc-ccchhcccCc-CCeeeCcCCcc
Q 037951 516 LEEIYLAENFFNGFI-----PSFFRTSRGIRKVDLSRNNFFG-QIPIFLEALS-LEYLNLSFNDF 573 (627)
Q Consensus 516 L~~L~L~~n~i~~~~-----~~~l~~l~~L~~L~ls~n~l~~-~~p~~~~~~~-L~~L~ls~n~l 573 (627)
|++|.++++...... ...-.....|+.+.+++++.+. ..-..+.... |+.+++-++..
T Consensus 374 lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~ 438 (483)
T KOG4341|consen 374 LRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQD 438 (483)
T ss_pred hccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhh
Confidence 888888877543221 1111235667777777777654 2223444444 77777766654
|
|
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
Probab=97.80 E-value=1.8e-05 Score=51.96 Aligned_cols=36 Identities=39% Similarity=0.538 Sum_probs=14.7
Q ss_pred CCCEEeCCCCcCcccCCccccCCCCCCEEEccCcccc
Q 037951 98 RLETLLLSDNSLVGKIPANLSYCSRLTVLVLGNNKLV 134 (627)
Q Consensus 98 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~ 134 (627)
+|++|++++|+|+ .+|..++++++|++|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 3444444444444 23333444444444444444443
|
... |
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.55 E-value=1.7e-05 Score=85.80 Aligned_cols=126 Identities=20% Similarity=0.201 Sum_probs=56.2
Q ss_pred CCCCCCEEEccCcccccc-CCccccCCCCCCeeeCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCC-CCCCccCCCCCcc
Q 037951 119 YCSRLTVLVLGNNKLVGS-IPFEFVSLYKLKQLALPMNNLTGGIPPFLGNLTSLEVVSLAGNPFGG-NIPDSLGQLKELK 196 (627)
Q Consensus 119 ~l~~L~~L~ls~n~l~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~-~~~~~l~~l~~L~ 196 (627)
-+|.|++|.+++-.+... ......++++|+.||++++.++.. .+++.+++|++|.+.+=.+.. ..-..+.++++|+
T Consensus 146 ~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~ 223 (699)
T KOG3665|consen 146 MLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLR 223 (699)
T ss_pred hCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCC
Confidence 345555555555443211 122233455555555555555522 445555555555555544442 1112344455555
Q ss_pred EEEeeCccccccC------CccccCCCCCcEEEeecccCccCCChhhhhcCCCCce
Q 037951 197 TLGIGGNNLSGSI------PPSIYNLSFLVIFSVSENQMHGSLPPSLGLYFPNLKL 246 (627)
Q Consensus 197 ~L~l~~n~~~~~~------~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~ 246 (627)
.||+|........ -+.-..+|.|+.||.+++.+.+.+-+.+...-|+|+.
T Consensus 224 vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~ 279 (699)
T KOG3665|consen 224 VLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQ 279 (699)
T ss_pred eeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhh
Confidence 5555544332110 0111224555555555555544444444333444443
|
|
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.47 E-value=2.6e-05 Score=84.34 Aligned_cols=105 Identities=20% Similarity=0.284 Sum_probs=51.9
Q ss_pred CCCCEEECCCCCCC-CCCCCccC-CCCCccEEEeeCcccccc-CCccccCCCCCcEEEeecccCccCCChhhhhcCCCCc
Q 037951 169 TSLEVVSLAGNPFG-GNIPDSLG-QLKELKTLGIGGNNLSGS-IPPSIYNLSFLVIFSVSENQMHGSLPPSLGLYFPNLK 245 (627)
Q Consensus 169 ~~L~~L~L~~n~~~-~~~~~~l~-~l~~L~~L~l~~n~~~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~ 245 (627)
.+|++|++++...- ...+..++ .+|+|++|.+.+-.+... +.....++++|..||+++++++.. ..-..+.+|+
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl---~GIS~LknLq 198 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL---SGISRLKNLQ 198 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc---HHHhccccHH
Confidence 46788888775432 22223332 357777777777555422 223344666677777766666522 1111244555
Q ss_pred eeccCCccccc-cCCccccCCCCCcEeecccc
Q 037951 246 LFQTNENFFSG-SIPISLSNASKLEYVEIASN 276 (627)
Q Consensus 246 ~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~ 276 (627)
.|.+.+-.+.. ..-..+.++++|+.||+|..
T Consensus 199 ~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~ 230 (699)
T KOG3665|consen 199 VLSMRNLEFESYQDLIDLFNLKKLRVLDISRD 230 (699)
T ss_pred HHhccCCCCCchhhHHHHhcccCCCeeecccc
Confidence 55554444432 11122334444444444443
|
|
| >PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00034 Score=59.25 Aligned_cols=123 Identities=20% Similarity=0.215 Sum_probs=54.3
Q ss_pred cccCCCCCCCEEECCCCCCcccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEEccCccccccCCccccCCCC
Q 037951 67 PQIGNLSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYK 146 (627)
Q Consensus 67 ~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~ 146 (627)
..|..+++|+.+.+.. .+......+|..+++|+.+++.++ +.......|.++++++.+.+.+ .+.......|..+++
T Consensus 6 ~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~ 82 (129)
T PF13306_consen 6 NAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN 82 (129)
T ss_dssp TTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred HHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccc
Confidence 4556666777777764 444445566777777777777664 5544455566776677777755 333244455666666
Q ss_pred CCeeeCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCccCCCCCc
Q 037951 147 LKQLALPMNNLTGGIPPFLGNLTSLEVVSLAGNPFGGNIPDSLGQLKEL 195 (627)
Q Consensus 147 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L 195 (627)
|+.+++..+ +.......|.++ +|+.+.+.. .+.......|.++++|
T Consensus 83 l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 83 LKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp ECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred ccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence 776666544 332334445555 666666554 3332333445444444
|
|
| >KOG4341 consensus F-box protein containing LRR [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.44 E-value=4.9e-06 Score=80.48 Aligned_cols=15 Identities=13% Similarity=-0.081 Sum_probs=6.5
Q ss_pred hhcCCCCceeccCCc
Q 037951 238 GLYFPNLKLFQTNEN 252 (627)
Q Consensus 238 ~~~~~~L~~L~l~~~ 252 (627)
...+++|++++++.+
T Consensus 212 a~gC~kL~~lNlSwc 226 (483)
T KOG4341|consen 212 AEGCRKLKYLNLSWC 226 (483)
T ss_pred HHhhhhHHHhhhccC
Confidence 333444444444443
|
|
| >KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00031 Score=61.60 Aligned_cols=83 Identities=24% Similarity=0.216 Sum_probs=38.0
Q ss_pred CCCEEEccCccccccCCccccCCCCCCeeeCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCC-CCccCCCCCccEEEe
Q 037951 122 RLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTGGIPPFLGNLTSLEVVSLAGNPFGGNI-PDSLGQLKELKTLGI 200 (627)
Q Consensus 122 ~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~-~~~l~~l~~L~~L~l 200 (627)
+...+||++|.+. ....|..++.|.+|.+.+|.|+...|..-.-+++|..|.+.+|.+.... -.-+..+++|++|.+
T Consensus 43 ~~d~iDLtdNdl~--~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 43 QFDAIDLTDNDLR--KLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred ccceecccccchh--hcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence 4555566666554 1223445555555555555555333333333444555555555543110 012333444444444
Q ss_pred eCcccc
Q 037951 201 GGNNLS 206 (627)
Q Consensus 201 ~~n~~~ 206 (627)
-+|+++
T Consensus 121 l~Npv~ 126 (233)
T KOG1644|consen 121 LGNPVE 126 (233)
T ss_pred cCCchh
Confidence 444443
|
|
| >PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0012 Score=55.85 Aligned_cols=55 Identities=18% Similarity=0.332 Sum_probs=20.8
Q ss_pred ccccCCCCCCEEEccCCcccccCCccccCCCCCCEEECCCCcccccCChhccCCCCCC
Q 037951 484 PRIGNLKALRCFDVSNNDLSGEIPSELGLCSSLEEIYLAENFFNGFIPSFFRTSRGIR 541 (627)
Q Consensus 484 ~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~ 541 (627)
..|..+++++.+++..+ +.......|.++ .|+.+.+.. .++......|.++++|+
T Consensus 75 ~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l~ 129 (129)
T PF13306_consen 75 NAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKLK 129 (129)
T ss_dssp TTTTT-TTECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG------
T ss_pred ccccccccccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccCC
Confidence 34555666666666554 432334455565 666666665 33334445556555553
|
|
| >KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.0004 Score=63.64 Aligned_cols=62 Identities=27% Similarity=0.364 Sum_probs=30.8
Q ss_pred CCCCCCEEECCCCCCcccCCcccCCCCCCCEEeCCCC--cCcccCCccccCCCCCCEEEccCcccc
Q 037951 71 NLSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDN--SLVGKIPANLSYCSRLTVLVLGNNKLV 134 (627)
Q Consensus 71 ~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~n--~i~~~~~~~~~~l~~L~~L~ls~n~l~ 134 (627)
.+..|..|++.+..++.. ..|..+++|+.|.++.| .+.+.++.-...+++|++|++++|++.
T Consensus 41 ~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~ 104 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK 104 (260)
T ss_pred cccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence 344455555555444311 22445556666666666 333333333344456666666665554
|
|
| >KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.00064 Score=62.36 Aligned_cols=93 Identities=20% Similarity=0.187 Sum_probs=58.0
Q ss_pred CCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEEccCc--cccccCCccccCCCCCCeeeCCCCCCCC-CCCCCC
Q 037951 89 IPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLTVLVLGNN--KLVGSIPFEFVSLYKLKQLALPMNNLTG-GIPPFL 165 (627)
Q Consensus 89 ~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ls~n--~l~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~l 165 (627)
+......+..|+.|++.+..++.. ..+-.+++|+.|.++.| ++.+.++.-...+++|+++++++|++.- ..-..+
T Consensus 35 ~~gl~d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl 112 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPL 112 (260)
T ss_pred cccccccccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchh
Confidence 444455566777777777666522 23556778888888888 5655555555666888888888887762 111224
Q ss_pred CCCCCCCEEECCCCCCCC
Q 037951 166 GNLTSLEVVSLAGNPFGG 183 (627)
Q Consensus 166 ~~l~~L~~L~L~~n~~~~ 183 (627)
..+.+|..|++.+|....
T Consensus 113 ~~l~nL~~Ldl~n~~~~~ 130 (260)
T KOG2739|consen 113 KELENLKSLDLFNCSVTN 130 (260)
T ss_pred hhhcchhhhhcccCCccc
Confidence 455666677777666553
|
|
| >KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.00039 Score=74.02 Aligned_cols=38 Identities=29% Similarity=0.314 Sum_probs=17.3
Q ss_pred CCcccEEEccCcc-cccccchhHHhccccccEEEeeccc
Q 037951 319 CSKLQVLSLGGNQ-FRGALPHSIANLSSQLQILVLGTNQ 356 (627)
Q Consensus 319 ~~~L~~L~l~~n~-~~~~~~~~~~~~~~~L~~L~l~~n~ 356 (627)
+++|+.|.+.+|. +++..-..+....+.|++|++++|.
T Consensus 268 c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 268 CPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH 306 (482)
T ss_pred CCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence 4555555555444 3433333333333345555555443
|
|
| >KOG2123 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.37 E-value=9e-05 Score=68.03 Aligned_cols=82 Identities=24% Similarity=0.218 Sum_probs=44.9
Q ss_pred CCCCEEECCCCCCcccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEEccCccccccC-CccccCCCCCCeee
Q 037951 73 SFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLTVLVLGNNKLVGSI-PFEFVSLYKLKQLA 151 (627)
Q Consensus 73 ~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~-~~~l~~l~~L~~L~ 151 (627)
.+++.|++-+++++++ .-..+|+.|++|.|+-|+|+..-| +..|.+|++|+|..|.|.+.. ...+.++++|+.|+
T Consensus 19 ~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence 3556666666666532 123456666666666666663322 566666666666666654211 12345555556665
Q ss_pred CCCCCCC
Q 037951 152 LPMNNLT 158 (627)
Q Consensus 152 l~~n~l~ 158 (627)
|..|.-.
T Consensus 95 L~ENPCc 101 (388)
T KOG2123|consen 95 LDENPCC 101 (388)
T ss_pred hccCCcc
Confidence 5555443
|
|
| >KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.0004 Score=73.92 Aligned_cols=65 Identities=23% Similarity=0.238 Sum_probs=32.6
Q ss_pred CCCCCcccEEEccCcc-cccccchhHHhccccccEEEeeccc-cccc-CcccccCCCCCCEEeCCCCc
Q 037951 316 LANCSKLQVLSLGGNQ-FRGALPHSIANLSSQLQILVLGTNQ-LYGS-IPSGIGNLVNLYSLQTEENQ 380 (627)
Q Consensus 316 l~~~~~L~~L~l~~n~-~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~-~~~~~~~l~~L~~L~l~~n~ 380 (627)
...+++|+.|+++.+. +++..-..+....++|+.|.+.+|. +++. +......++.|++|+++.|.
T Consensus 239 ~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 239 LSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH 306 (482)
T ss_pred hhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence 3445666677776665 4544444444433356666655554 3321 11222345555666655553
|
|
| >KOG2123 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.00044 Score=63.62 Aligned_cols=81 Identities=20% Similarity=0.197 Sum_probs=37.2
Q ss_pred CcccEEEccCcccccccchhHHhccccccEEEeecccccccCcccccCCCCCCEEeCCCCcccccc-chhhcCCCCCcEe
Q 037951 320 SKLQVLSLGGNQFRGALPHSIANLSSQLQILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSI-PKEMGKLLNLQGL 398 (627)
Q Consensus 320 ~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~-~~~~~~l~~L~~L 398 (627)
.+.++|+..+|.++++ .+..-.+.|++|.|+-|+++..-| +..|++|++|+|..|.+.... -..+.++++|+.|
T Consensus 19 ~~vkKLNcwg~~L~DI---sic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDI---SICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHhhhhcccCCCccHH---HHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 3445555555555422 122222355555555555543222 445555555555555544211 1233444555555
Q ss_pred eccCCcc
Q 037951 399 DFGGNHF 405 (627)
Q Consensus 399 ~L~~n~~ 405 (627)
.|..|.-
T Consensus 94 WL~ENPC 100 (388)
T KOG2123|consen 94 WLDENPC 100 (388)
T ss_pred hhccCCc
Confidence 5554443
|
|
| >KOG0473 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.00022 Score=63.73 Aligned_cols=102 Identities=21% Similarity=0.206 Sum_probs=62.9
Q ss_pred eeecCCCCcceecccccCCCCCCCEEECCCCCCcccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEEccCcc
Q 037951 53 TCDLRSKALSGLLSPQIGNLSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLTVLVLGNNK 132 (627)
Q Consensus 53 ~c~l~~~~l~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ls~n~ 132 (627)
+||++-..++.+....+..++..+.||++.|.+. .+-.-|+.++.+..|+++.|.+. .+|+.++....++.+++..|.
T Consensus 22 tc~~s~s~~s~~~v~ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~ 99 (326)
T KOG0473|consen 22 TCDLSLSELSEIPVREIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNN 99 (326)
T ss_pred ccCCCHHHhcccchhhhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccc
Confidence 5666655555554456666777777777777654 34444666666777777776666 566666666666666666665
Q ss_pred ccccCCccccCCCCCCeeeCCCCCC
Q 037951 133 LVGSIPFEFVSLYKLKQLALPMNNL 157 (627)
Q Consensus 133 l~~~~~~~l~~l~~L~~L~l~~n~l 157 (627)
.. ..|.+++..+.++++++-.+.+
T Consensus 100 ~~-~~p~s~~k~~~~k~~e~k~~~~ 123 (326)
T KOG0473|consen 100 HS-QQPKSQKKEPHPKKNEQKKTEF 123 (326)
T ss_pred hh-hCCccccccCCcchhhhccCcc
Confidence 55 4555555555555555555543
|
|
| >PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] | Back alignment and domain information |
|---|
Probab=94.97 E-value=0.01 Score=32.19 Aligned_cols=18 Identities=44% Similarity=0.791 Sum_probs=8.3
Q ss_pred CCEEEccCCcccccCCccc
Q 037951 492 LRCFDVSNNDLSGEIPSEL 510 (627)
Q Consensus 492 L~~L~Ls~n~l~~~~~~~l 510 (627)
|++||+++|+++ .+|..|
T Consensus 2 L~~Ldls~n~l~-~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSF 19 (22)
T ss_dssp ESEEEETSSEES-EEGTTT
T ss_pred ccEEECCCCcCE-eCChhh
Confidence 444555555444 444333
|
LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A .... |
| >KOG4308 consensus LRR-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.67 E-value=0.00021 Score=74.07 Aligned_cols=60 Identities=22% Similarity=0.285 Sum_probs=29.0
Q ss_pred CCEEEccCCccccc----CCccccCC-CCCCEEECCCCcccccC----ChhccCCCCCCEEECCCCcCc
Q 037951 492 LRCFDVSNNDLSGE----IPSELGLC-SSLEEIYLAENFFNGFI----PSFFRTSRGIRKVDLSRNNFF 551 (627)
Q Consensus 492 L~~L~Ls~n~l~~~----~~~~l~~l-~~L~~L~L~~n~i~~~~----~~~l~~l~~L~~L~ls~n~l~ 551 (627)
+.+|++++|.+.+. ....+..+ ..++.++++.|+|+... .+.+..++.++.+.++.|.+.
T Consensus 235 ~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 235 LRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred hHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence 44455555554422 12233333 45555666666555442 233344555666666655554
|
|
| >PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] | Back alignment and domain information |
|---|
Probab=94.53 E-value=0.016 Score=31.42 Aligned_cols=19 Identities=42% Similarity=0.482 Sum_probs=10.5
Q ss_pred CCEEECCCCcccccCChhcc
Q 037951 516 LEEIYLAENFFNGFIPSFFR 535 (627)
Q Consensus 516 L~~L~L~~n~i~~~~~~~l~ 535 (627)
|++|++++|+++ .+|..|+
T Consensus 2 L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp ESEEEETSSEES-EEGTTTT
T ss_pred ccEEECCCCcCE-eCChhhc
Confidence 556666666666 3444443
|
LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A .... |
| >PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D | Back alignment and domain information |
|---|
Probab=92.23 E-value=0.087 Score=26.40 Aligned_cols=13 Identities=54% Similarity=0.805 Sum_probs=5.0
Q ss_pred CCCEEEccCCccc
Q 037951 491 ALRCFDVSNNDLS 503 (627)
Q Consensus 491 ~L~~L~Ls~n~l~ 503 (627)
+|+.|++++|+++
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 4455555555543
|
... |
| >KOG4308 consensus LRR-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.17 E-value=0.0014 Score=68.01 Aligned_cols=60 Identities=23% Similarity=0.248 Sum_probs=27.5
Q ss_pred CCEEeCCCCccccc----cchhhcCC-CCCcEeeccCCcccccCC----hhhhCCCCCCEEEccCCccc
Q 037951 371 LYSLQTEENQFTGS----IPKEMGKL-LNLQGLDFGGNHFSGEIP----STLGNLSSLYEIFLGDNNLS 430 (627)
Q Consensus 371 L~~L~l~~n~~~~~----~~~~~~~l-~~L~~L~L~~n~~~~~~~----~~~~~~~~L~~L~l~~n~~~ 430 (627)
+.++++..|.+.+. ....+..+ ..++.++++.|.+++.-. .....++.++++.++.|.+.
T Consensus 235 ~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 235 LRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred hHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence 44455555554322 12223333 445555555555553222 22334455555555555554
|
|
| >KOG0473 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.92 E-value=0.0041 Score=55.93 Aligned_cols=88 Identities=24% Similarity=0.210 Sum_probs=63.0
Q ss_pred ccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEEccCccccccCCccccCCCCCCeeeCCCCCCCCCCCCCCCCCCCC
Q 037951 92 EFGRLRRLETLLLSDNSLVGKIPANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTGGIPPFLGNLTSL 171 (627)
Q Consensus 92 ~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L 171 (627)
.+....+.+.||++.|++. .+...|+-+..|+.|+++.|.+. ..|..++....++++++..|..+ ..|.++++.+++
T Consensus 37 ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~ 113 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHP 113 (326)
T ss_pred hhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCc
Confidence 4566677788888888766 45556777777888888887776 66777777777777777776665 556777777777
Q ss_pred CEEECCCCCCC
Q 037951 172 EVVSLAGNPFG 182 (627)
Q Consensus 172 ~~L~L~~n~~~ 182 (627)
+++++-++.+.
T Consensus 114 k~~e~k~~~~~ 124 (326)
T KOG0473|consen 114 KKNEQKKTEFF 124 (326)
T ss_pred chhhhccCcch
Confidence 77777666654
|
|
| >KOG3864 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.43 E-value=0.058 Score=47.80 Aligned_cols=82 Identities=15% Similarity=0.203 Sum_probs=46.3
Q ss_pred CCCCEEeCCCCccccccchhhcCCCCCcEeeccCCcccccC-Chhh-hCCCCCCEEEccCCc-cccccChhhcCCCCCCE
Q 037951 369 VNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEI-PSTL-GNLSSLYEIFLGDNN-LSGVIPSSLGNLERLAI 445 (627)
Q Consensus 369 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~-~~~~-~~~~~L~~L~l~~n~-~~~~~~~~l~~l~~L~~ 445 (627)
..++.++-+++.+..+.-+.+..++.++.|.+.+|.-.+.. -+.+ +-.++|+.|++++|. |+......+..+++|+.
T Consensus 101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~ 180 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRR 180 (221)
T ss_pred ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHH
Confidence 34556666666665555555666666666666666532111 0111 124677777777666 66555556666677777
Q ss_pred EECcC
Q 037951 446 LEMFA 450 (627)
Q Consensus 446 L~l~~ 450 (627)
|.+.+
T Consensus 181 L~l~~ 185 (221)
T KOG3864|consen 181 LHLYD 185 (221)
T ss_pred HHhcC
Confidence 66654
|
|
| >smart00370 LRR Leucine-rich repeats, outliers | Back alignment and domain information |
|---|
Probab=87.63 E-value=0.5 Score=26.66 Aligned_cols=14 Identities=29% Similarity=0.463 Sum_probs=6.4
Q ss_pred CCCEEECCCCcccc
Q 037951 515 SLEEIYLAENFFNG 528 (627)
Q Consensus 515 ~L~~L~L~~n~i~~ 528 (627)
+|+.|+|++|.++.
T Consensus 3 ~L~~L~L~~N~l~~ 16 (26)
T smart00370 3 NLRELDLSNNQLSS 16 (26)
T ss_pred CCCEEECCCCcCCc
Confidence 44444444444443
|
|
| >smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily | Back alignment and domain information |
|---|
Probab=87.63 E-value=0.5 Score=26.66 Aligned_cols=14 Identities=29% Similarity=0.463 Sum_probs=6.4
Q ss_pred CCCEEECCCCcccc
Q 037951 515 SLEEIYLAENFFNG 528 (627)
Q Consensus 515 ~L~~L~L~~n~i~~ 528 (627)
+|+.|+|++|.++.
T Consensus 3 ~L~~L~L~~N~l~~ 16 (26)
T smart00369 3 NLRELDLSNNQLSS 16 (26)
T ss_pred CCCEEECCCCcCCc
Confidence 44444444444443
|
|
| >KOG3864 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=86.82 E-value=0.096 Score=46.47 Aligned_cols=35 Identities=23% Similarity=0.112 Sum_probs=20.7
Q ss_pred CCCCCEEeCCCC-ccccccchhhcCCCCCcEeeccC
Q 037951 368 LVNLYSLQTEEN-QFTGSIPKEMGKLLNLQGLDFGG 402 (627)
Q Consensus 368 l~~L~~L~l~~n-~~~~~~~~~~~~l~~L~~L~L~~ 402 (627)
.++|+.|++++| +|+...-..+..+++|+.|.+.+
T Consensus 150 ~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~ 185 (221)
T KOG3864|consen 150 APSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYD 185 (221)
T ss_pred ccchheeeccCCCeechhHHHHHHHhhhhHHHHhcC
Confidence 356666666666 45544445556666666666654
|
|
| >PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A | Back alignment and domain information |
|---|
Probab=84.67 E-value=0.49 Score=26.07 Aligned_cols=20 Identities=25% Similarity=0.341 Sum_probs=10.2
Q ss_pred CcccEEEccCcccccccchh
Q 037951 320 SKLQVLSLGGNQFRGALPHS 339 (627)
Q Consensus 320 ~~L~~L~l~~n~~~~~~~~~ 339 (627)
++|++|+|++|++++.....
T Consensus 2 ~~L~~L~l~~n~i~~~g~~~ 21 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGASA 21 (24)
T ss_dssp TT-SEEE-TSSBEHHHHHHH
T ss_pred CCCCEEEccCCcCCHHHHHH
Confidence 45666666666665544433
|
... |
| >smart00370 LRR Leucine-rich repeats, outliers | Back alignment and domain information |
|---|
Probab=83.72 E-value=1 Score=25.32 Aligned_cols=13 Identities=46% Similarity=0.514 Sum_probs=5.9
Q ss_pred CCCEEeCCCCcCc
Q 037951 98 RLETLLLSDNSLV 110 (627)
Q Consensus 98 ~L~~L~L~~n~i~ 110 (627)
+|++|+|++|++.
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00370 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 4444444444444
|
|
| >smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily | Back alignment and domain information |
|---|
Probab=83.72 E-value=1 Score=25.32 Aligned_cols=13 Identities=46% Similarity=0.514 Sum_probs=5.9
Q ss_pred CCCEEeCCCCcCc
Q 037951 98 RLETLLLSDNSLV 110 (627)
Q Consensus 98 ~L~~L~L~~n~i~ 110 (627)
+|++|+|++|++.
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00369 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 4444444444444
|
|
| >KOG4242 consensus Predicted myosin-I-binding protein [Cell motility] | Back alignment and domain information |
|---|
Probab=81.87 E-value=13 Score=37.91 Aligned_cols=83 Identities=16% Similarity=0.051 Sum_probs=40.0
Q ss_pred CCCEEEccCCcccccCCcc--ccCCCCCCEEECCCCcc---ccc--CChhc----cCCCCCCEEECCCCcCccccchhcc
Q 037951 491 ALRCFDVSNNDLSGEIPSE--LGLCSSLEEIYLAENFF---NGF--IPSFF----RTSRGIRKVDLSRNNFFGQIPIFLE 559 (627)
Q Consensus 491 ~L~~L~Ls~n~l~~~~~~~--l~~l~~L~~L~L~~n~i---~~~--~~~~l----~~l~~L~~L~ls~n~l~~~~p~~~~ 559 (627)
.+++|++.+|++.++.... ...-++.+.+++.+-.- .+. ..... ..-.-+..+.++.|+..........
T Consensus 355 R~q~l~~rdnnldgeg~~vgk~~~s~s~r~l~agrs~~kqvm~s~~~a~~v~k~~~~~g~l~el~ls~~~lka~l~s~in 434 (553)
T KOG4242|consen 355 RVQVLLQRDNNLDGEGGAVGKRKQSKSGRILKAGRSGDKQVMDSSTEAPPVSKKSRTHGVLAELSLSPGPLKAGLESAIN 434 (553)
T ss_pred eeeEeeccccccccccccccceeeccccccccccccCCceeccccccchhhhhhhcccccccCcccCCCcccccHHHHHH
Confidence 4677777777666543332 23345555555543221 110 00000 1123356666777766543333222
Q ss_pred c---Cc-CCeeeCcCCcc
Q 037951 560 A---LS-LEYLNLSFNDF 573 (627)
Q Consensus 560 ~---~~-L~~L~ls~n~l 573 (627)
. .+ +.+|++++|..
T Consensus 435 ~l~stqtl~kldisgn~m 452 (553)
T KOG4242|consen 435 KLLSTQTLAKLDISGNGM 452 (553)
T ss_pred hhccCcccccccccCCCc
Confidence 2 12 77777777755
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 627 | ||||
| 3riz_A | 772 | Crystal Structure Of The Plant Steroid Receptor Bri | 2e-46 | ||
| 3riz_A | 772 | Crystal Structure Of The Plant Steroid Receptor Bri | 2e-45 | ||
| 3rgx_A | 768 | Structural Insight Into Brassinosteroid Perception | 3e-46 | ||
| 3rgx_A | 768 | Structural Insight Into Brassinosteroid Perception | 3e-45 | ||
| 1ogq_A | 313 | The Crystal Structure Of Pgip (Polygalacturonase In | 2e-20 | ||
| 2o6q_A | 270 | Structural Diversity Of The Hagfish Variable Lympho | 2e-07 | ||
| 2o6q_A | 270 | Structural Diversity Of The Hagfish Variable Lympho | 7e-06 | ||
| 3rfs_A | 272 | Design Of A Binding Scaffold Based On Variable Lymp | 4e-06 | ||
| 3rfs_A | 272 | Design Of A Binding Scaffold Based On Variable Lymp | 9e-05 | ||
| 1w8a_A | 192 | Third Lrr Domain Of Drosophila Slit Length = 192 | 5e-06 | ||
| 1w8a_A | 192 | Third Lrr Domain Of Drosophila Slit Length = 192 | 7e-04 | ||
| 4fmz_A | 347 | Crystal Structure Of An Internalin (Inlf) From List | 2e-05 | ||
| 2o6s_A | 208 | Structural Diversity Of The Hagfish Variable Lympho | 2e-05 | ||
| 3rfj_A | 279 | Design Of A Binding Scaffold Based On Variable Lymp | 2e-05 | ||
| 4fho_A | 231 | Crystal Structure Of An Internalin C2 (Inlc2) From | 3e-05 | ||
| 3m19_A | 251 | Crystal Structure Of Variable Lymphocyte Receptor V | 5e-05 | ||
| 3m18_A | 251 | Crystal Structure Of Variable Lymphocyte Receptor V | 5e-05 | ||
| 2omt_A | 462 | Crystal Structure Of Inla G194s+sHEC1 COMPLEX Lengt | 7e-05 | ||
| 2omu_A | 462 | Crystal Structure Of Inla G194s+s Y369s/hec1 Comple | 7e-05 | ||
| 3ula_A | 279 | Crystal Structure Of The Tv3 Mutant F63w-Md-2-Erito | 9e-05 | ||
| 2z62_A | 276 | Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 A | 9e-05 | ||
| 3ul7_A | 278 | Crystal Structure Of The Tv3 Mutant F63w Length = 2 | 9e-05 | ||
| 3ul8_A | 279 | Crystal Structure Of The Tv3 Mutant V134l Length = | 1e-04 | ||
| 3ul9_A | 278 | Structure Of The Tv3 Mutant M41e Length = 278 | 1e-04 | ||
| 3e6j_A | 229 | Crystal Structure Of Variable Lymphocyte Receptor ( | 1e-04 | ||
| 1h6u_A | 308 | Internalin H: Crystal Structure Of Fused N-Terminal | 1e-04 | ||
| 2omx_A | 462 | Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX | 2e-04 | ||
| 2o6r_A | 177 | Structural Diversity Of The Hagfish Variable Lympho | 2e-04 | ||
| 3v47_A | 455 | Crystal Structure Of The N-Tetminal Fragment Of Zeb | 3e-04 | ||
| 2omz_A | 466 | Crystal Structure Of Inla Y369a/hec1 Complex Length | 5e-04 | ||
| 1o6s_A | 466 | Internalin (Listeria Monocytogenes) E-Cadherin (Hum | 6e-04 |
| >pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772 | Back alignment and structure |
|
| >pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772 | Back alignment and structure |
|
| >pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768 | Back alignment and structure |
|
| >pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768 | Back alignment and structure |
|
| >pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313 | Back alignment and structure |
|
| >pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors A29 Length = 270 | Back alignment and structure |
|
| >pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors A29 Length = 270 | Back alignment and structure |
|
| >pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 272 | Back alignment and structure |
|
| >pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 272 | Back alignment and structure |
|
| >pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit Length = 192 | Back alignment and structure |
|
| >pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit Length = 192 | Back alignment and structure |
|
| >pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria Monocytogenes Str. 4b F2365 At 1.91 A Resolution Length = 347 | Back alignment and structure |
|
| >pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors B59 Length = 208 | Back alignment and structure |
|
| >pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 279 | Back alignment and structure |
|
| >pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From Listeria Monocytogenes Str. 4b F2365 At 1.90 A Resolution Length = 231 | Back alignment and structure |
|
| >pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor Vlra.R5.1 Length = 251 | Back alignment and structure |
|
| >pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor Vlra.R2.1 In Complex With Hen Egg Lysozyme Length = 251 | Back alignment and structure |
|
| >pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX Length = 462 | Back alignment and structure |
|
| >pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex Length = 462 | Back alignment and structure |
|
| >pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran Complex Length = 279 | Back alignment and structure |
|
| >pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And Hagfish Vlrb.61 Length = 276 | Back alignment and structure |
|
| >pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w Length = 278 | Back alignment and structure |
|
| >pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l Length = 279 | Back alignment and structure |
|
| >pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e Length = 278 | Back alignment and structure |
|
| >pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr) Rbc36 In Complex With H-Trisaccharide Length = 229 | Back alignment and structure |
|
| >pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal Domains Length = 308 | Back alignment and structure |
|
| >pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX Length = 462 | Back alignment and structure |
|
| >pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors B61 Length = 177 | Back alignment and structure |
|
| >pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish Tlr5 In Complex With Salmonella Flagellin Length = 455 | Back alignment and structure |
|
| >pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex Length = 466 | Back alignment and structure |
|
| >pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human) Recognition Complex Length = 466 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 426 bits (1097), Expect = e-140
Identities = 167/588 (28%), Positives = 247/588 (42%), Gaps = 66/588 (11%)
Query: 55 DLRSKALSGLLSPQIGNLSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIP 114
D+ S S + P +G+ S L+ +++ N + G+ L+ L +S N VG IP
Sbjct: 206 DVSSNNFSTGI-PFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIP 264
Query: 115 ANLSYCSRLTVLVLGNNKLVGSIPFEFV-SLYKLKQLALPMNNLTGGIPPFLGNLTSLEV 173
L L L NK G IP + L L L N+ G +PPF G+ + LE
Sbjct: 265 P--LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLES 322
Query: 174 VSLAGNPFGGNIP-DSLGQLKELKTLGIGGNNLSGSIPPSIYNLSF-LVIFSVSENQMHG 231
++L+ N F G +P D+L +++ LK L + N SG +P S+ NLS L+ +S N G
Sbjct: 323 LALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSG 382
Query: 232 SLPPSLG-LYFPNLKLFQTNENFFSGSIPISLSNASKLEYVEIASNSFFGKLSVNFGGMK 290
+ P+L L+ N F+G IP +LSN S+L + ++ N G + + G +
Sbjct: 383 PILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLS 442
Query: 291 NLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLSSQLQIL 350
L L L N L GE L L+ L L N G +P ++N ++ L +
Sbjct: 443 KLRDLKLWLNML-EGE-----IPQELMYVKTLETLILDFNDLTGEIPSGLSNCTN-LNWI 495
Query: 351 VLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIP 410
L N+L G IP IG L NL L+ N F+G+IP E+G +L LD N F+G IP
Sbjct: 496 SLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIP 555
Query: 411 ST--------------------LGNLSSLYEIFLGDN--NLSGVIPSSLGNLERLAILEM 448
+ + N E N G+ L L +
Sbjct: 556 AAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNI 615
Query: 449 FANELSGTIPGDIFNISSLSVSLDLAENHFVGSIPPRIGNLKALRCFDVSNNDLSGEIPS 508
+ G N S+ LD++ N G IP IG++ L ++ +ND+SG IP
Sbjct: 616 TSRVYGGHTSPTFDNNGSMM-FLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPD 674
Query: 509 ELGLCSSLEEIYLAENFFNGFIPSFFRTSRGIRKVDLSRNNFFGQIPIFLEAL-SLEYLN 567
E+G L + DLS N G+IP + AL L ++
Sbjct: 675 EVGDLRGLNIL------------------------DLSSNKLDGRIPQAMSALTMLTEID 710
Query: 568 LSFNDFEGRLPTRGIFANASAISVGGCNRLCGGIHELQLPKCPEHESS 615
LS N+ G +P G F LCG LP+C +
Sbjct: 711 LSNNNLSGPIPEMGQFETFPPAKFLNNPGLCG----YPLPRCDPSNAD 754
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 424 bits (1093), Expect = e-140
Identities = 171/585 (29%), Positives = 274/585 (46%), Gaps = 42/585 (7%)
Query: 16 EGDLAALQAFKSMISHDPQGILNSWNDSRHFCEWEGITC--------DLRSKALS---GL 64
++ L +FK ++ + +L W+ +++ C ++G+TC DL SK L+
Sbjct: 11 YREIHQLISFKDVL--PDKNLLPDWSSNKNPCTFDGVTCRDDKVTSIDLSSKPLNVGFSA 68
Query: 65 LSPQIGNLSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPA--NLSYCSR 122
+S + +L+ L + L N+ I G + F L +L LS NSL G + +L CS
Sbjct: 69 VSSSLLSLTGLESLFLSNSHINGSVS-GFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSG 127
Query: 123 LTVLVLGNNKLVGSIPFE-FVSLYKLKQLALPMNNLTGGIPP---FLGNLTSLEVVSLAG 178
L L + +N L + L L+ L L N+++G L+ ++++G
Sbjct: 128 LKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISG 187
Query: 179 NPFGGNIPDSLGQLKELKTLGIGGNNLSGSIPPSIYNLSFLVIFSVSENQMHGSLPPSLG 238
N G++ + + L+ L + NN S I P + + S L +S N++ G ++
Sbjct: 188 NKISGDVD--VSRCVNLEFLDVSSNNFSTGI-PFLGDCSALQHLDISGNKLSGDFSRAIS 244
Query: 239 LYFPNLKLFQTNENFFSGSIPISLSNASKLEYVEIASNSFFGKLSVNFGG-MKNLSYLIL 297
LKL + N F G IP L+Y+ +A N F G++ G L+ L L
Sbjct: 245 -TCTELKLLNISSNQFVGPIP--PLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDL 301
Query: 298 EYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGALP-HSIANLSSQLQILVLGTNQ 356
N+ G +CS L+ L+L N F G LP ++ + L++L L N+
Sbjct: 302 SGNHF-YGA-----VPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRG-LKVLDLSFNE 354
Query: 357 LYGSIPSGIGNL-VNLYSLQTEENQFTGSIPKEMGK--LLNLQGLDFGGNHFSGEIPSTL 413
G +P + NL +L +L N F+G I + + LQ L N F+G+IP TL
Sbjct: 355 FSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTL 414
Query: 414 GNLSSLYEIFLGDNNLSGVIPSSLGNLERLAILEMFANELSGTIPGDIFNISSLSVSLDL 473
N S L + L N LSG IPSSLG+L +L L+++ N L G IP ++ + +L L L
Sbjct: 415 SNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLET-LIL 473
Query: 474 AENHFVGSIPPRIGNLKALRCFDVSNNDLSGEIPSELGLCSSLEEIYLAENFFNGFIPSF 533
N G IP + N L +SNN L+GEIP +G +L + L+ N F+G IP+
Sbjct: 474 DFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAE 533
Query: 534 FRTSRGIRKVDLSRNNFFGQIPIFLEALSLEYLNLSFNDFEGRLP 578
R + +DL+ N F G IP A+ + ++ N G+
Sbjct: 534 LGDCRSLIWLDLNTNLFNGTIP---AAMFKQSGKIAANFIAGKRY 575
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 409 bits (1054), Expect = e-134
Identities = 165/560 (29%), Positives = 255/560 (45%), Gaps = 30/560 (5%)
Query: 55 DLRSKALSGLLSP--QIGNLSFLREINLMNNTIQGEIPLE-FGRLRRLETLLLSDNSLVG 111
DL +LSG ++ +G+ S L+ +N+ +NT+ + +L LE L LS NS+ G
Sbjct: 106 DLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISG 165
Query: 112 KIPANLSY---CSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTGGIPPFLGNL 168
C L L + NK+ G + L+ L + NN + GIP FLG+
Sbjct: 166 ANVVGWVLSDGCGELKHLAISGNKISGDVDV--SRCVNLEFLDVSSNNFSTGIP-FLGDC 222
Query: 169 TSLEVVSLAGNPFGGNIPDSLGQLKELKTLGIGGNNLSGSIPPSIYNLSFLVIFSVSENQ 228
++L+ + ++GN G+ ++ ELK L I N G IPP L L S++EN+
Sbjct: 223 SALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENK 280
Query: 229 MHGSLPPSLGLYFPNLKLFQTNENFFSGSIPISLSNASKLEYVEIASNSFFGKLSVN-FG 287
G +P L L + N F G++P + S LE + ++SN+F G+L ++
Sbjct: 281 FTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLL 340
Query: 288 GMKNLSYLILEYNNLGSGESDEMGFMNSLANCS-KLQVLSLGGNQFRGALPHSIANLS-S 345
M+ L L L +N SGE SL N S L L L N F G + ++ +
Sbjct: 341 KMRGLKVLDLSFNEF-SGE-----LPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKN 394
Query: 346 QLQILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHF 405
LQ L L N G IP + N L SL N +G+IP +G L L+ L N
Sbjct: 395 TLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNML 454
Query: 406 SGEIPSTLGNLSSLYEIFLGDNNLSGVIPSSLGNLERLAILEMFANELSGTIPGDIFNIS 465
GEIP L + +L + L N+L+G IPS L N L + + N L+G IP I +
Sbjct: 455 EGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLE 514
Query: 466 SLSVSLDLAENHFVGSIPPRIGNLKALRCFDVSNNDLSGEIPSELGLCSSLEEIYLAENF 525
+L++ L L+ N F G+IP +G+ ++L D++ N +G IP+ + S +A NF
Sbjct: 515 NLAI-LKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGK----IAANF 569
Query: 526 FNGFIPSFFRTSRGIRKVDLSRN--NFFGQIPIFLEALS-LEYLNLSFNDFEGRLP-TRG 581
G + + ++ + N F G L LS N++ + G T
Sbjct: 570 IAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFD 629
Query: 582 IFANASAISVGGCNRLCGGI 601
+ + + N L G I
Sbjct: 630 NNGSMMFLDM-SYNMLSGYI 648
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 93.8 bits (234), Expect = 4e-20
Identities = 40/129 (31%), Positives = 59/129 (45%), Gaps = 1/129 (0%)
Query: 52 ITCDLRSKALSGLLSPQIGNLSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVG 111
C++ S+ G SP N + +++ N + G IP E G + L L L N + G
Sbjct: 611 NPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISG 670
Query: 112 KIPANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTGGIPPFLGNLTSL 171
IP + L +L L +NKL G IP +L L ++ L NNL+G I P +G +
Sbjct: 671 SIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPI-PEMGQFETF 729
Query: 172 EVVSLAGNP 180
NP
Sbjct: 730 PPAKFLNNP 738
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 48.8 bits (117), Expect = 4e-06
Identities = 16/64 (25%), Positives = 27/64 (42%)
Query: 524 NFFNGFIPSFFRTSRGIRKVDLSRNNFFGQIPIFLEALSLEYLNLSFNDFEGRLPTRGIF 583
N + S + G+ + LS ++ G + F + SL L+LS N G + T
Sbjct: 63 NVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSL 122
Query: 584 ANAS 587
+ S
Sbjct: 123 GSCS 126
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 283 bits (725), Expect = 6e-87
Identities = 97/596 (16%), Positives = 179/596 (30%), Gaps = 96/596 (16%)
Query: 39 SWNDSRHFCEW---EGITC---------DLRSKALSGLLSPQIGNLSFLREINLMNNTIQ 86
+WN ++ W G++ L SG + IG L+ L + L ++ +
Sbjct: 59 NWNFNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEK 118
Query: 87 G----EIPLEFGRLRRLETLLLSDNSLVGKIPANLSY--CSRLTVLVLGNNKLVGSIPFE 140
P E S L + ++ SI
Sbjct: 119 VNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKS 178
Query: 141 FVSLYKLKQLALPMNNLTGGIPPFLGNLTSLEVVSLAGNPFGG----------------- 183
K Q+ NN+T + + LT L + +PF
Sbjct: 179 SRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQ 237
Query: 184 --NIPDSLGQLKELKTLGIGGNNLSGSIPPSIYNLSFLVIFSVSENQMHGSLPPSLGLYF 241
LK+L + + +P + L + + +V+ N+
Sbjct: 238 YKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKD---- 293
Query: 242 PNLKLFQTNENFFSGSIPISLSNASKLEYVEIASNSFF-GKLSVNFGGMKNLSYLILEYN 300
K++ + I N+ + + MK L L YN
Sbjct: 294 -------------DWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYN 340
Query: 301 NLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLSSQLQILVLGTNQLYGS 360
L G + + + KL L+L NQ +P + + Q++ L N+L
Sbjct: 341 QL-------EGKLPAFGSEIKLASLNLAYNQITE-IPANFCGFTEQVENLSFAHNKL-KY 391
Query: 361 IPS--GIGNLVNLYSLQTEENQFTG-------SIPKEMGKLLNLQGLDFGGNHFSGEIPS 411
IP+ ++ + ++ N+ + K +N+ ++ N S
Sbjct: 392 IPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKE 451
Query: 412 TLGNLSSLYEIFLGDNNLSGV-------IPSSLGNLERLAILEMFANELSGTIPGDIF-- 462
S L I L N L+ + + N L +++ N+L+ + D
Sbjct: 452 LFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTK-LSDDFRAT 510
Query: 463 NISSLSVSLDLAENHFVGSIPPRIGNLKALRCFDVSN------NDLSGEIPSELGLCSSL 516
+ L +DL+ N F P + N L+ F + N N E P + LC SL
Sbjct: 511 TLPYLVG-IDLSYNSF-SKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSL 568
Query: 517 EEIYLAENFFNGFIPSFFRTSRGIRKVDLSRNNFFGQIP-IFLEALSLEYLNLSFN 571
++ + N I +D+ N + L ++
Sbjct: 569 TQLQIGSNDIRKVNEKIT---PNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYD 621
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 212 bits (542), Expect = 1e-60
Identities = 78/469 (16%), Positives = 147/469 (31%), Gaps = 52/469 (11%)
Query: 153 PMNNLTGGIPPFLGNLTSLEVVSLAGNPFGGNIPDSLGQLKELKTLGIGGNNLSG----S 208
++ L + + +SL G G +PD++GQL EL+ L +G +
Sbjct: 65 ELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLF 124
Query: 209 IPPSIYNLSFLVIFSVSENQMHGSLPPSLG-LYFPNLKLFQTNENFFSGSIPISLSNASK 267
P I + F +L N + SI S K
Sbjct: 125 GPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLK 184
Query: 268 LEYVEIASNSFFGKLSVNFGGMKNLSYLILEYNNLGSGESDEMGFMNSLA---------- 317
+ SN+ +S + L + + + E +
Sbjct: 185 DTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDL 243
Query: 318 ---NCSKLQVLSLGGNQFRGALPHSIANLSSQLQILVLGTNQL--------YGSIPSGIG 366
N L + + LP + L +Q++ + N+ +
Sbjct: 244 KWDNLKDLTDVEVYNCPNLTKLPTFLKALPE-MQLINVACNRGISGEQLKDDWQALADAP 302
Query: 367 NLVNLYSLQTEENQFT-GSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLG 425
+ + N + + K+ L L+ N G++P+ G+ L + L
Sbjct: 303 VGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPA-FGSEIKLASLNLA 361
Query: 426 DNNLSGVIPSSLGNLERLAILEMFANELSGTIPGDIFNISSLS--VSLDLAENHFVG--- 480
N ++ + + G E++ L N+L IP +IF+ S+S ++D + N
Sbjct: 362 YNQITEIPANFCGFTEQVENLSFAHNKLK-YIP-NIFDAKSVSVMSAIDFSYNEIGSVDG 419
Query: 481 ----SIPPRIGNLKALRCFDVSNNDLSGEIPSELGLCSSLEEIYLAENFFNGF------- 529
+ P + ++SNN +S S L I L N
Sbjct: 420 KNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKD 479
Query: 530 IPSFFRTSRGIRKVDLSRNNFFGQIP---IFLEALSLEYLNLSFNDFEG 575
F+ + + +DL N ++ L ++LS+N F
Sbjct: 480 ENENFKNTYLLTSIDLRFNK-LTKLSDDFRATTLPYLVGIDLSYNSFSK 527
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 204 bits (521), Expect = 9e-58
Identities = 60/434 (13%), Positives = 130/434 (29%), Gaps = 51/434 (11%)
Query: 65 LSPQIGNLSFLREINLMNNTIQGE-------------------IPLEFGRLRRLETLLLS 105
+S + L+ LR+ + N+ E L++ L+ L + +
Sbjct: 198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVY 257
Query: 106 DNSLVGKIPANLSYCSRLTVLVLGNNKLV--------GSIPFEFVSLYKLKQLALPMNNL 157
+ + K+P L + ++ + N+ + + K++ + + NNL
Sbjct: 258 NCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNL 317
Query: 158 TGG-IPPFLGNLTSLEVVSLAGNPFGGNIPDSLGQLKELKTLGIGGNNLSGSIPPSIYNL 216
+ L + L ++ N G + G +L +L + N ++
Sbjct: 318 KTFPVETSLQKMKKLGMLECLYNQLEG-KLPAFGSEIKLASLNLAYNQITEIPANFCGFT 376
Query: 217 SFLVIFSVSENQMHGSLPPSLGL-YFPNLKLFQTNENFFSG-------SIPISLSNASKL 268
+ S + N++ +P + + N + + +
Sbjct: 377 EQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINV 435
Query: 269 EYVEIASNSFFGKLSVNFGGMKNLSYLILEYNNLGS-GESDEMGFMNSLANCSKLQVLSL 327
+ +++N F LS + L N L ++ + N L + L
Sbjct: 436 SSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDL 495
Query: 328 GGNQFRGALPHSIANLS-SQLQILVLGTNQLYGSIPSGIGNLVNLYSLQTEE------NQ 380
N+ L + L + L N P+ N L N+
Sbjct: 496 RFNKLTK-LSDDFRATTLPYLVGIDLSYNSF-SKFPTQPLNSSTLKGFGIRNQRDAQGNR 553
Query: 381 FTGSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLGDNNLSGVIPSSLGNL 440
P+ + +L L G N N+S L + DN + S +
Sbjct: 554 TLREWPEGITLCPSLTQLQIGSNDIRKVNEKITPNISVLD---IKDNPNISIDLSYVCPY 610
Query: 441 ERLAILEMFANELS 454
+ +F ++
Sbjct: 611 IEAGMYMLFYDKTQ 624
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 106 bits (267), Expect = 3e-24
Identities = 30/245 (12%), Positives = 71/245 (28%), Gaps = 26/245 (10%)
Query: 373 SLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLGDNNLSG- 431
+ E + + + + GL G SG +P +G L+ L + LG +
Sbjct: 61 NFNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVN 120
Query: 432 ---VIPSSLGNLERLAILEMFANELSGTIPGDIFNISSLSVS-LDLAENHFVGSIPPRIG 487
P + + T + + + SI
Sbjct: 121 ERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSR 180
Query: 488 NLKALRCFDVSNNDLSGEIPSELGLCSSLEEIYLAENFFNGFIPSFFRTS---------- 537
+N+++ + + + L + Y+ + F +
Sbjct: 181 ITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYK 239
Query: 538 ---------RGIRKVDLSRNNFFGQIPIFLEAL-SLEYLNLSFNDFEGRLPTRGIFANAS 587
+ + V++ ++P FL+AL ++ +N++ N + + +
Sbjct: 240 TEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALA 299
Query: 588 AISVG 592
VG
Sbjct: 300 DAPVG 304
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 270 bits (692), Expect = 6e-86
Identities = 86/306 (28%), Positives = 122/306 (39%), Gaps = 15/306 (4%)
Query: 312 FMNSLANCSKLQ----VLSLGGNQFRGALPHSIANLSSQLQILVLGTNQLYGS--IPSGI 365
L N + L + G L + + L L L IPS +
Sbjct: 14 IKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYR-VNNLDLSGLNLPKPYPIPSSL 72
Query: 366 GNLVNLYSLQ-TEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFL 424
NL L L N G IP + KL L L + SG IP L + +L +
Sbjct: 73 ANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDF 132
Query: 425 GDNNLSGVIPSSLGNLERLAILEMFANELSGTIPGDIFNISSLSVSLDLAENHFVGSIPP 484
N LSG +P S+ +L L + N +SG IP + S L S+ ++ N G IPP
Sbjct: 133 SYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPP 192
Query: 485 RIGNLKALRCFDVSNNDLSGEIPSELGLCSSLEEIYLAENFFNGFIPSFFRTSRGIRKVD 544
NL L D+S N L G+ G + ++I+LA+N + S+ + +D
Sbjct: 193 TFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVG-LSKNLNGLD 250
Query: 545 LSRNNFFGQIPIFLEAL-SLEYLNLSFNDFEGRLPTRGIFANASAISVGGCNRLCGGIHE 603
L N +G +P L L L LN+SFN+ G +P G + LCG
Sbjct: 251 LRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSP-- 308
Query: 604 LQLPKC 609
LP C
Sbjct: 309 --LPAC 312
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 210 bits (537), Expect = 3e-63
Identities = 88/374 (23%), Positives = 135/374 (36%), Gaps = 77/374 (20%)
Query: 18 DLAALQAFKSMISHDPQGILNSWNDSRHFCE--WEGITCDLRSKALSGLLSPQIGNLSFL 75
D AL K + + L+SW + C W G+ CD +
Sbjct: 7 DKQALLQIKKDLGNPTT--LSSWLPTTDCCNRTWLGVLCD------------TDTQTYRV 52
Query: 76 REINLMNNTIQGE--IPLEFGRLRRLETLLLSD-NSLVGKIPANLSYCSRLTVLVLGNNK 132
++L + IP L L L + N+LVG IP ++ ++L L + +
Sbjct: 53 NNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT- 111
Query: 133 LVGSIPFEFVSLYKLKQLALPMNNLTGGIPPFLGNLTSLEVVSLAGNPFGGNIPDSLGQL 192
N++G IP FL + +L + + N G +P S+ L
Sbjct: 112 -----------------------NVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSL 148
Query: 193 KELKTLGIGGNNLSGSIPPSIYNLSFLVIFSVSENQMHGSLPPSLGLYFPNLKLFQTNEN 252
L + GN +SG+IP S + S L S+ + N
Sbjct: 149 PNLVGITFDGNRISGAIPDSYGSFS--------------KLFTSMTIS----------RN 184
Query: 253 FFSGSIPISLSNASKLEYVEIASNSFFGKLSVNFGGMKNLSYLILEYNNLGSGESDEMGF 312
+G IP + +N + L +V+++ N G SV FG KN + L N+L
Sbjct: 185 RLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSL-------AFD 236
Query: 313 MNSLANCSKLQVLSLGGNQFRGALPHSIANLSSQLQILVLGTNQLYGSIPSGIGNLVNLY 372
+ + L L L N+ G LP + L L L + N L G IP G GNL
Sbjct: 237 LGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKF-LHSLNVSFNNLCGEIPQG-GNLQRFD 294
Query: 373 SLQTEENQFTGSIP 386
N+ P
Sbjct: 295 VSAYANNKCLCGSP 308
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 160 bits (406), Expect = 2e-44
Identities = 49/206 (23%), Positives = 87/206 (42%), Gaps = 3/206 (1%)
Query: 55 DLRSKALSGLLSPQIGNLSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIP 114
+ +SG + + + L ++ N + G +P L L + N + G IP
Sbjct: 107 YITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIP 166
Query: 115 ANLSYCSRL-TVLVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTGGIPPFLGNLTSLEV 173
+ S+L T + + N+L G IP F +L L + L N L G G+ + +
Sbjct: 167 DSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQK 225
Query: 174 VSLAGNPFGGNIPDSLGQLKELKTLGIGGNNLSGSIPPSIYNLSFLVIFSVSENQMHGSL 233
+ LA N ++ +G K L L + N + G++P + L FL +VS N + G +
Sbjct: 226 IHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI 284
Query: 234 PPSLGLYFPNLKLFQTNENFFSGSIP 259
P L ++ + N+ +P
Sbjct: 285 PQGGNLQRFDVSAYANNKCLCGSPLP 310
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 270 bits (692), Expect = 2e-82
Identities = 112/541 (20%), Positives = 188/541 (34%), Gaps = 37/541 (6%)
Query: 55 DLRSKALSGLLSPQIGNLSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIP 114
DL L L S + L+ ++L IQ + L L TL+L+ N +
Sbjct: 34 DLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLAL 93
Query: 115 ANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTGG-IPPFLGNLTSLEV 173
S S L LV L F L LK+L + N + +P + NLT+LE
Sbjct: 94 GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEH 153
Query: 174 VSLAGNPFGGNIPDSLGQLKELK----TLGIGGNNLSGSIPPSIYNLSFLVIFSVSENQM 229
+ L+ N L L ++ +L + N ++ P + + L ++ N
Sbjct: 154 LDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LHKLTLRNNFD 212
Query: 230 HGSLPPSLGLYFPNLKLFQTNENFFSGSIPISLSNASKLE---YVEIASNS------FFG 280
++ + L++ + F + + S LE + I +
Sbjct: 213 SLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLD 272
Query: 281 KLSVNFGGMKNLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSI 340
+ F + N+S L + + + Q L L +F +
Sbjct: 273 DIIDLFNCLTNVSSFSLVSVTIER--------VKDFSYNFGWQHLELVNCKFGQFPTLKL 324
Query: 341 ANLSSQLQILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQ--FTGSIPKEMGKLLNLQGL 398
+L L G +L +L L N F G + +L+ L
Sbjct: 325 KSLKR------LTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYL 378
Query: 399 DFGGNHFSGEIPSTLGNLSSLYEIFLGDNNLSGVIPSS-LGNLERLAILEMFANELSGTI 457
D N + S L L + +NL + S +L L L++
Sbjct: 379 DLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF 437
Query: 458 PGDIFNISSLSVSLDLAENHFVGSIPPRI-GNLKALRCFDVSNNDLSGEIPSELGLCSSL 516
G +SSL V L +A N F + P I L+ L D+S L P+ SSL
Sbjct: 438 NGIFNGLSSLEV-LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL 496
Query: 517 EEIYLAENFFNGFIPSFFRTSRGIRKVDLSRNNFFGQIPIFLEAL--SLEYLNLSFNDFE 574
+ + ++ N F ++ ++ +D S N+ L+ SL +LNL+ NDF
Sbjct: 497 QVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 556
Query: 575 G 575
Sbjct: 557 C 557
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 228 bits (583), Expect = 1e-66
Identities = 106/549 (19%), Positives = 189/549 (34%), Gaps = 40/549 (7%)
Query: 55 DLRSKALSGLLSPQIGNLSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIP 114
DL + + +LS L + L N IQ F L L+ L+ + +L
Sbjct: 58 DLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLEN 117
Query: 115 ANLSYCSRLTVLVLGNNKLVG-SIPFEFVSLYKLKQLALPMNNLTGGIPPFLGNLTSLEV 173
+ + L L + +N + +P F +L L+ L L N + L L + +
Sbjct: 118 FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPL 177
Query: 174 V----SLAGNPFGGNIPDSLGQLKELKTLGIGGNNLSGSIPP-SIYNLSFLVIFSVSENQ 228
+ L+ NP P + +++ L L + N S ++ I L+ L + + +
Sbjct: 178 LNLSLDLSLNPMNFIQPGAFKEIR-LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGE 236
Query: 229 M--HGSLPPSLGLYFPNLKLFQTNEN------FFSGSIPISLSNASKLEYVEIASNSFFG 280
G+L L E ++ I + + + + S +
Sbjct: 237 FRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER 296
Query: 281 KLSVNFGGMKNLSYLILEYNNLGSGESDEMGFMNSL-------------ANCSKLQVLSL 327
+F +L L G + ++ + L + L+ L L
Sbjct: 297 --VKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDL 354
Query: 328 GGNQ--FRGALPHSIANLSSQLQILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSI 385
N F+G S +S L+ L L N + + S L L L + +
Sbjct: 355 SRNGLSFKGCCSQSDFGTTS-LKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMS 412
Query: 386 PKEM-GKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLGDNNLSGVI-PSSLGNLERL 443
+ L NL LD H LSSL + + N+ P L L
Sbjct: 413 EFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL 472
Query: 444 AILEMFANELSGTIPGDIFNISSLSVSLDLAENHFVGSIPPRIGNLKALRCFDVSNNDLS 503
L++ +L P ++SSL V L+++ N+F L +L+ D S N +
Sbjct: 473 TFLDLSQCQLEQLSPTAFNSLSSLQV-LNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM 531
Query: 504 GEIPSELG-LCSSLEEIYLAENFFNGFIPS--FFRTSRGIRKVDLSRNNFFGQIPIFLEA 560
EL SSL + L +N F F + + R++ + P +
Sbjct: 532 TSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQG 591
Query: 561 LSLEYLNLS 569
+ + LN++
Sbjct: 592 MPVLSLNIT 600
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 206 bits (527), Expect = 9e-59
Identities = 100/510 (19%), Positives = 159/510 (31%), Gaps = 47/510 (9%)
Query: 101 TLLLSDNSLVGKIPANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTGG 160
T + + KIP NL L L N L + F S +L+ L L +
Sbjct: 11 TYQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTI 67
Query: 161 IPPFLGNLTSLEVVSLAGNPFGGNIPDSLGQLKELKTLGIGGNNLSGSIPPSIYNLSFLV 220
+L+ L + L GNP + L L+ L NL+ I +L L
Sbjct: 68 EDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLK 127
Query: 221 IFSVSENQMHGSLPPSLGLYFPNLKLFQTNENFFSGSIPISLSNASKLEYVEIA---SNS 277
+V+ N + P NL+ + N L ++ + ++ S +
Sbjct: 128 ELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187
Query: 278 FFGKLSVNFGGMKNLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGA-- 335
+ L L L N + + L+V L +FR
Sbjct: 188 PMNFIQPGAFKEIRLHKLTLRNNFDSLNVMK-----TCIQGLAGLEVHRLVLGEFRNEGN 242
Query: 336 LPHSIANLSSQLQILVLGTNQL------YGSIPSGIGNLVNLYSLQTEENQFTGSIPKEM 389
L + L L + +L I L N+ S
Sbjct: 243 LEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDF-- 300
Query: 390 GKLLNLQGLDFGGNHFS-------------------GEIPSTLGNLSSLYEIFLGDNNLS 430
Q L+ F G + +L SL + L N LS
Sbjct: 301 SYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLS 360
Query: 431 --GVIPSSLGNLERLAILEMFANELSGTIPGDIFNISSLSVSLDLAENHFVGSIPPRI-G 487
G S L L++ N + T+ + + L LD ++ +
Sbjct: 361 FKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEH-LDFQHSNLKQMSEFSVFL 418
Query: 488 NLKALRCFDVSNNDLSGEIPSELGLCSSLEEIYLAENFFNGFI-PSFFRTSRGIRKVDLS 546
+L+ L D+S+ SSLE + +A N F P F R + +DLS
Sbjct: 419 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 478
Query: 547 RNNFFGQIPIFLEAL-SLEYLNLSFNDFEG 575
+ P +L SL+ LN+S N+F
Sbjct: 479 QCQLEQLSPTAFNSLSSLQVLNMSHNNFFS 508
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 259 bits (663), Expect = 2e-77
Identities = 111/551 (20%), Positives = 192/551 (34%), Gaps = 40/551 (7%)
Query: 55 DLRSKALSGLLSPQIGNLSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIP 114
L S ++ + + L ++L +N + +L L+ LLLS+N +
Sbjct: 103 HLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKS 162
Query: 115 ANLSYC--SRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTGGIPPFLG---NLT 169
L S L L L +N++ P F ++ +L L L L + L T
Sbjct: 163 EELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANT 222
Query: 170 SLEVVSLAGNPFGGNIPDSLGQLK--ELKTLGIGGNNLSGSIPPSIYNLSFLVIFSVSEN 227
S+ +SL+ + + LK L L + NNL+ S L L F + N
Sbjct: 223 SIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYN 282
Query: 228 QMHGSLPPSLG-------LYFP-NLKLFQTNENFFSGSIPISLSNASKLEYVEIASNSFF 279
+ SL L + + S LE++ + N
Sbjct: 283 NIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIP 342
Query: 280 GKLSVNFGGMKNLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHS 339
G S F G+ NL YL L + F++ S L +L+L N+ +
Sbjct: 343 GIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSL--AHSPLHILNLTKNKISKIESDA 400
Query: 340 IANLSSQLQILVLGTNQLYGSIPSG-IGNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGL 398
+ L L++L LG N++ + L N++ + N++ + +LQ L
Sbjct: 401 FSWLGH-LEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRL 459
Query: 399 DFGGNHFSG--EIPSTLGNLSSLYEIFLGDNNLSGVIPSSLGNLERLAILEMFANELSGT 456
PS L +L + L +NN++ + L LE+L IL++ N L+
Sbjct: 460 MLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLA-- 517
Query: 457 IPGDIFNISSLSVSLDLAENHFVGSIPPRIGNLKALRCFDVSNNDLSGEIPSELGLCSSL 516
L ++ G + L L ++ +N L
Sbjct: 518 ---------------RLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFEL 562
Query: 517 EEIYLAENFFNGFIPSFFRTSRGIRKVDLSRNNFFGQIPIFLEAL--SLEYLNLSFNDFE 574
+ I L N N S F ++ ++L +N +L L++ FN F+
Sbjct: 563 KIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFD 622
Query: 575 GRLPTRGIFAN 585
+ F N
Sbjct: 623 CTCESIAWFVN 633
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 255 bits (653), Expect = 4e-76
Identities = 111/560 (19%), Positives = 192/560 (34%), Gaps = 42/560 (7%)
Query: 47 CEWEGITCDLRSKALSGLLSPQIGNLSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSD 106
C D L+ + P + + +NL +N ++ F R +L +L +
Sbjct: 2 CTVSHEVADCSHLKLTQV--PD-DLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGF 58
Query: 107 NSLVGKIPANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTGGIPPFLG 166
N++ P L VL L +N+L F L +L L N++
Sbjct: 59 NTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFV 118
Query: 167 NLTSLEVVSLAGNPFGGNIPDSLGQLKELKTLGIGGNNLSGSIPPSIY--NLSFLVIFSV 224
+L + L+ N + QL+ L+ L + N + + S L +
Sbjct: 119 KQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLEL 178
Query: 225 SENQMHGSLPPSLGLYFPNLKLFQTNENFFSGSIPISLS---NASKLEYVEIASNSFFGK 281
S NQ+ P L N S+ L + + + ++++
Sbjct: 179 SSNQIKEFSPGCFH-AIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTT 237
Query: 282 LSVNFGGMK--NLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHS 339
+ F G+K NL+ L L YNNL +D S A +L+ L N + HS
Sbjct: 238 SNTTFLGLKWTNLTMLDLSYNNLNVVGND------SFAWLPQLEYFFLEYNNIQHLFSHS 291
Query: 340 IANLSS--------QLQILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSIPKEMGK 391
+ L + + L L L L E+N G
Sbjct: 292 LHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTG 351
Query: 392 LLNLQGLDFGGNHFSGE--IPSTLGNL--SSLYEIFLGDNNLSGVIPSSLGNLERLAILE 447
L+NL+ L + S T +L S L+ + L N +S + + L L +L+
Sbjct: 352 LINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLD 411
Query: 448 MFANELSGTIPGDIF-NISSLSVSLDLAENHFVGSIPPRIGNLKALRCFDVSNNDLSG-- 504
+ NE+ + G + + ++ + L+ N ++ + +L+ + L
Sbjct: 412 LGLNEIGQELTGQEWRGLENIFE-IYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVD 470
Query: 505 EIPSELGLCSSLEEIYLAENFFNGFIPSFFRTSRGIRKVDLSRNN--------FFGQIPI 556
PS +L + L+ N + +DL NN G
Sbjct: 471 SSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIY 530
Query: 557 FLEALS-LEYLNLSFNDFEG 575
FL+ LS L LNL N F+
Sbjct: 531 FLKGLSHLHILNLESNGFDE 550
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 214 bits (548), Expect = 3e-61
Identities = 93/480 (19%), Positives = 156/480 (32%), Gaps = 35/480 (7%)
Query: 55 DLRSKALSGLLSPQIGNLSFLREINLMNNTIQGEIPLEFG---RLRRLETLLLSDNSLVG 111
+L S + + L + L N + + + + L LS++ L
Sbjct: 177 ELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLST 236
Query: 112 KIPANLSYC--SRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTGGIPPFLGNLT 169
+ LT+L L N L F L +L+ L NN+ L L
Sbjct: 237 TSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLF 296
Query: 170 SLEVVSLAGNPFGGNI---------PDSLGQLKELKTLGIGGNNLSGSIPPSIYNLSFLV 220
++ ++L + +I S LK L+ L + N++ G L L
Sbjct: 297 NVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLK 356
Query: 221 IFSVSENQMHGSLPPS---LGLYFPNLKLFQTNENFFSGSIPISLSNASKLEYVEIASNS 277
S+S + + + L L + +N S + S LE +++ N
Sbjct: 357 YLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNE 416
Query: 278 FFGKLSVN-FGGMKNLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRG-- 334
+L+ + G++N+ + L YN NS A LQ L L +
Sbjct: 417 IGQELTGQEWRGLENIFEIYLSYNKYLQLTR------NSFALVPSLQRLMLRRVALKNVD 470
Query: 335 ALPHSIANLSSQLQILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFT--------GSIP 386
+ P L + L IL L N + + L L L + N G
Sbjct: 471 SSPSPFQPLRN-LTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPI 529
Query: 387 KEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLGDNNLSGVIPSSLGNLERLAIL 446
+ L +L L+ N F +L L I LG NNL+ + S N L L
Sbjct: 530 YFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSL 589
Query: 447 EMFANELSGTIPGDIFNISSLSVSLDLAENHFVGSIPPRIGNLKALRCFDVSNNDLSGEI 506
+ N ++ LD+ N F + + + + +LS
Sbjct: 590 NLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPELSSHY 649
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 243 bits (623), Expect = 2e-72
Identities = 103/534 (19%), Positives = 175/534 (32%), Gaps = 24/534 (4%)
Query: 55 DLRSKALSGLLSPQIGNLSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIP 114
+ L + + L L ++L I F RL+TL+L+ N L+
Sbjct: 39 EFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAE 98
Query: 115 ANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTGGIPPFLGNLTSLEVV 174
LS L L + + L+ L L N+++ P L+V+
Sbjct: 99 TALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVL 158
Query: 175 SLAGNPFGGNIPDSLGQLKELK--TLGIGGNNLSGSIPPSIYNLSFLVIFSVSENQMHGS 232
N + + L++ +L + GN+++ I P ++ + + Q
Sbjct: 159 DFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIA-GIEPGAFDSAVFQSLNFGGTQNLLV 217
Query: 233 LPPSL-GLYFPNLKLFQTNENFFSGSIPISLSN--ASKLEYVEIASNSFFGKLSVNFGGM 289
+ L +L L + P +E + + + FF S F
Sbjct: 218 IFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCF 277
Query: 290 KNLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLSSQLQI 349
L L L +L + L S L+ L L N+F S +N S L
Sbjct: 278 SGLQELDLTATHLSE-------LPSGLVGLSTLKKLVLSANKFENLCQISASNFPS-LTH 329
Query: 350 LVLGTNQLYGSIPSG-IGNLVNLYSLQTEENQFTGS--IPKEMGKLLNLQGLDFGGNHFS 406
L + N + +G + NL NL L + S ++ L +LQ L+ N
Sbjct: 330 LSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPL 389
Query: 407 GEIPSTLGNLSSLYEIFLGDNNLSGVIP-SSLGNLERLAILEMFANELSGTIPGDIFNIS 465
L + L L S NL L +L + + L + +
Sbjct: 390 SLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLP 449
Query: 466 SLSVSLDLAENHFVGSIPPRIG---NLKALRCFDVSNNDLSGEIPSELGLCSSLEEIYLA 522
+L L+L NHF + L L +S DLS + + L+
Sbjct: 450 ALQH-LNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLS 508
Query: 523 ENFFNGFIPSFFRTSRGIRKVDLSRNNFFGQIPIFLEAL-SLEYLNLSFNDFEG 575
N +GI ++L+ N+ +P L L +NL N +
Sbjct: 509 HNRLTSSSIEALSHLKGIY-LNLASNHISIILPSLLPILSQQRTINLRQNPLDC 561
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 233 bits (597), Expect = 9e-69
Identities = 103/544 (18%), Positives = 167/544 (30%), Gaps = 21/544 (3%)
Query: 42 DSRHFCEWEGITCDLRSKALSGLLSPQIGNLSFLREINLMNNTIQGEIPLEFGRLRRLET 101
D + + T + + L+ + P + + N + F RL L
Sbjct: 5 DQKCIEKEVNKTYNCENLGLNEI--PG-TLPNSTECLEFSFNVLPTIQNTTFSRLINLTF 61
Query: 102 LLLSDNSLVGKIPANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTGGI 161
L L+ + RL LVL N L+ LK L ++
Sbjct: 62 LDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSID 121
Query: 162 PPFLGNLTSLEVVSLAGNPFGGNIPDSLGQLKELKTLGIGGNNLSGSIPPSIYNLSFLVI 221
L N +LE + L N ++LK L N + + +L
Sbjct: 122 FIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATN 181
Query: 222 FSVSENQMHGSLPPSLGLYFPNLKLFQTNENFFSGSIPISLSNAS--KLEYVEIASNSFF 279
S++ N + + I L N++ L
Sbjct: 182 LSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDE 241
Query: 280 GKLSVNFGGMKNLS--YLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGALP 337
F G+ +S + L+ + + S N+ S LQ L L LP
Sbjct: 242 DISPAVFEGLCEMSVESINLQKHYFFNISS------NTFHCFSGLQELDLTATHLS-ELP 294
Query: 338 HSIANLSSQLQILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSIPKEM-GKLLNLQ 396
+ LS+ L+ LVL N+ N +L L + N + L NL+
Sbjct: 295 SGLVGLST-LKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLR 353
Query: 397 GLDFGGNH--FSGEIPSTLGNLSSLYEIFLGDNNLSGVIPSSLGNLERLAILEMFANELS 454
LD + S L NLS L + L N + + +L +L++ L
Sbjct: 354 ELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLK 413
Query: 455 GTIPGDIFNISSLSVSLDLAENHFVGSIPPRIGNLKALRCFDVSNNDLSGEIPSELGL-- 512
F L L+L+ + S L AL+ ++ N +
Sbjct: 414 VKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQ 473
Query: 513 -CSSLEEIYLAENFFNGFIPSFFRTSRGIRKVDLSRNNFFGQIPIFLEALSLEYLNLSFN 571
LE + L+ + F + + + VDLS N L L YLNL+ N
Sbjct: 474 TLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIYLNLASN 533
Query: 572 DFEG 575
Sbjct: 534 HISI 537
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 145 bits (368), Expect = 4e-37
Identities = 63/382 (16%), Positives = 128/382 (33%), Gaps = 20/382 (5%)
Query: 55 DLRSKALSGLLSPQIGNLSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIP 114
D+ + +S + + +S + INL + F L+ L L+ L ++P
Sbjct: 237 DMDDEDISPAVFEGLCEMS-VESINLQKHYFFNISSNTFHCFSGLQELDLTATHL-SELP 294
Query: 115 ANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTGGIPP-FLGNLTSLEV 173
+ L S L LVL NK + L L++ N + L NL +L
Sbjct: 295 SGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRE 354
Query: 174 VSLAGNPFG--GNIPDSLGQLKELKTLGIGGNNLSGSIPPSIYNLSFLVIFSVSENQMHG 231
+ L+ + L L L++L + N + L + ++ ++
Sbjct: 355 LDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKV 414
Query: 232 SLPPSLGLYFPNLKLFQTNENFFSGSIPISLSNASKLEYVEIASNSF---FGKLSVNFGG 288
S LK+ + + S L+++ + N F + + +
Sbjct: 415 KDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQT 474
Query: 289 MKNLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLSSQLQ 348
+ L L+L + +L S + + + + + L N+ + ++++L
Sbjct: 475 LGRLEILVLSFCDLSSIDQH------AFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-- 526
Query: 349 ILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGE 408
L L +N + +PS + L ++ +N + L
Sbjct: 527 YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTC--SNIYFLEW--YKENMQKLEDT 582
Query: 409 IPSTLGNLSSLYEIFLGDNNLS 430
+ N L + L D LS
Sbjct: 583 EDTLCENPPLLRGVRLSDVTLS 604
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 96.2 bits (240), Expect = 6e-21
Identities = 28/201 (13%), Positives = 62/201 (30%), Gaps = 3/201 (1%)
Query: 394 NLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLGDNNLSGVIPSSLGNLERLAILEMFANEL 453
+ + L+F N +T L +L + L + + + + RL L + AN L
Sbjct: 34 STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPL 93
Query: 454 SGTIPGDIFNISSLSVSLDLAENHFVGSIPPRIGNLKALRCFDVSNNDLSGEIPSELGLC 513
+ +L L + + N K L + +N +S +
Sbjct: 94 IFMAETALSGPKALKH-LFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPT 152
Query: 514 SSLEEIYLAENFFNGFIPSFFRTSRGIRKVDLS-RNNFFGQIPI-FLEALSLEYLNLSFN 571
L+ + N + + + + L+ N I ++ + LN
Sbjct: 153 EKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGT 212
Query: 572 DFEGRLPTRGIFANASAISVG 592
+ + ++ +G
Sbjct: 213 QNLLVIFKGLKNSTIQSLWLG 233
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 87.4 bits (217), Expect = 3e-18
Identities = 40/211 (18%), Positives = 70/211 (33%), Gaps = 7/211 (3%)
Query: 398 LDFGGNHFSGEIPSTLGNLSSLYEIFLGDNNLSGVIPSSLGNLERLAILEMFANELSGTI 457
+ + EIP TL +S + N L + ++ L L L++ ++
Sbjct: 17 YNCENLGLN-EIPGTL--PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIH 73
Query: 458 PGDIFNISSLSVSLDLAENHFVGSIPPRIGNLKALRCFDVSNNDLSGEIPSELGLCSSLE 517
+ L L L N + + KAL+ +S L +LE
Sbjct: 74 EDTFQSQHRLDT-LVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLE 132
Query: 518 EIYLAENFFNGFIPSFFRTSRGIRKVDLSRNNFFGQIP---IFLEALSLEYLNLSFNDFE 574
+YL N + + ++ +D N L+ + LNL+ ND
Sbjct: 133 SLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIA 192
Query: 575 GRLPTRGIFANASAISVGGCNRLCGGIHELQ 605
G P A +++ GG L L+
Sbjct: 193 GIEPGAFDSAVFQSLNFGGTQNLLVIFKGLK 223
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 246 bits (630), Expect = 2e-71
Identities = 89/602 (14%), Positives = 182/602 (30%), Gaps = 96/602 (15%)
Query: 32 DPQGILNSWNDSRHFCEWEGITC------------DLRSKALSGLLSPQIGNLSFLREIN 79
+ +WN ++ W L G + IG L+ L+ ++
Sbjct: 294 NNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLS 353
Query: 80 LMNNTIQGEIPLEFGRLRRLETLLLSDNS-------LVGKIPANLSYCSRLTVLVLGNNK 132
++ L + + + L+ L + N +
Sbjct: 354 FGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPE 413
Query: 133 LVGSIPFEFVSLYKLKQLALPMNNLTGGIPPFLGNLTSLEVVSLAGNPFGG--------- 183
+ +SL + L N I + LT L+++ A +PF
Sbjct: 414 MKPIKKDSRISLKDTQIGNL--TNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWED 471
Query: 184 ----------NIPDSLGQLKELKTLGIGGNNLSGSIPPSIYNLSFLVIFSVSENQMHGSL 233
N S LK+L + + +P +Y+L L +++ N+ +
Sbjct: 472 ANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAA 531
Query: 234 PPSLGLYFPNLKLFQTNENFFSGSIPISLSNASKLEYVEIASNSFFG-KLSVNFGGMKNL 292
+ K++ + N+ S + M L
Sbjct: 532 QLKADW----------------TRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKL 575
Query: 293 SYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLSSQLQILVL 352
L +N + + + KL L L NQ +P + Q++ L
Sbjct: 576 GLLDCVHNKVRH--------LEAFGTNVKLTDLKLDYNQIEE-IPEDFCAFTDQVEGLGF 626
Query: 353 GTNQLYGSIPS--GIGNLVNLYSLQTEENQFTG-----SIPKEMGKLLNLQGLDFGGNHF 405
N+L IP+ ++ + S+ N+ S + K +N + N
Sbjct: 627 SHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEI 685
Query: 406 SGEIPSTLGNLSSLYEIFLGDNNLS-------GVIPSSLGNLERLAILEMFANELSGTIP 458
S + I L +N ++ + N L +++ N+L+ ++
Sbjct: 686 QKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLS 744
Query: 459 GDIF--NISSLSVSLDLAENHFVGSIPPRIGNLKALRCF------DVSNNDLSGEIPSEL 510
D + LS +D++ N F S P + N L+ F D N + + P+ +
Sbjct: 745 DDFRATTLPYLSN-MDVSYNCF-SSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGI 802
Query: 511 GLCSSLEEIYLAENFFNGFIPSFFRTSRGIRKVDLSRNNFF-GQIPIFLEALSLEYLNLS 569
C SL ++ + N + +D++ N + + L
Sbjct: 803 TTCPSLIQLQIGSNDIRKVDEKLT---PQLYILDIADNPNISIDVTSVCPYIEAGMYVLL 859
Query: 570 FN 571
++
Sbjct: 860 YD 861
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 190 bits (483), Expect = 2e-51
Identities = 72/452 (15%), Positives = 137/452 (30%), Gaps = 45/452 (9%)
Query: 153 PMNNLTGGIPPFLGNLTSLEVVSLAGNPFGGNIPDSLGQLKELKTLGIGGNNLSGSIPPS 212
++ L N + +SLAG G +PD++GQL ELK L G ++ + S
Sbjct: 307 ELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLF 366
Query: 213 IYNLSFLVIFSVSENQMHGSLPPSLGLYFPNLKLFQTNENFFSG---SIPISLSNASKLE 269
+ ++++ Y L L ++ + PI + L+
Sbjct: 367 GDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLK 426
Query: 270 YVEI-ASNSFFGKLSVNFGGMKNLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLG 328
+I + +S + L + + + +
Sbjct: 427 DTQIGNLTNRITFISKAIQRLTKLQIIYFANSPF-----------TYDNIAVDWEDANSD 475
Query: 329 GNQFRGALPHSIANLSSQLQILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTG----- 383
+ S +NL L + L +P + +L L SL N+
Sbjct: 476 YAKQYENEELSWSNLKD-LTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLK 534
Query: 384 ----SIPKEMGKLLNLQGLDFGGNHFSG-EIPSTLGNLSSLYEIFLGDNNLSGVIPSSLG 438
+ + +Q G N+ ++L + L + N + + G
Sbjct: 535 ADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR--HLEAFG 592
Query: 439 NLERLAILEMFANELSGTIPGDIFNISSLSVSLDLAENHFVGSIPPR--IGNLKALRCFD 496
+L L++ N++ IP D + L + N IP ++ + D
Sbjct: 593 TNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKL-KYIPNIFNAKSVYVMGSVD 650
Query: 497 VSNNDLSGEIPS-----ELGLCSSLEEIYLAENFFNGFIPSFFRTSRGIRKVDLSRNNF- 550
S N + E + + + + L+ N F F T I + LS N
Sbjct: 651 FSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT 710
Query: 551 ------FGQIPIFLEAL-SLEYLNLSFNDFEG 575
+ L ++L FN
Sbjct: 711 SIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS 742
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 183 bits (467), Expect = 2e-49
Identities = 69/450 (15%), Positives = 133/450 (29%), Gaps = 63/450 (14%)
Query: 50 EGITCDLRSKALSGLLSPQIGNLSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSL 109
+ + NL L ++ L N ++P L L++L ++ N
Sbjct: 468 DWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRG 527
Query: 110 VG---------KIPANLSYCSRLTVLVLGNNKLVG-SIPFEFVSLYKLKQLALPMNNLTG 159
+ ++ + ++ + +G N L + KL L N +
Sbjct: 528 ISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR- 586
Query: 160 GIPPFLGNLTSLEVVSLAGNPFGGNIPDSLGQ-LKELKTLGIGGNNLSGSIPP--SIYNL 216
G L + L N IP+ +++ LG N L IP + ++
Sbjct: 587 -HLEAFGTNVKLTDLKLDYNQI-EEIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSV 643
Query: 217 SFLVIFSVSENQMHGSLPPSLGLYFPNLKLFQTNENFFSGSIPISLSNASKLEYVEIASN 276
+ S N++ GS ++ + K V ++ N
Sbjct: 644 YVMGSVDFSYNKI-GSEGRNISCSMDDYKG-------------------INASTVTLSYN 683
Query: 277 SFFGKLSVNFGGMKNLSYLILEYNNLGSGESDEMGFMN-SLANCSKLQVLSLGGNQFRGA 335
+ F +S +IL N + S + + + + N L + L N+
Sbjct: 684 EIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS- 742
Query: 336 LPHSIANLS-SQLQILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSIPKEMGKLLN 394
L + L + + N S P+ N L +
Sbjct: 743 LSDDFRATTLPYLSNMDVSYNCF-SSFPTQPLNSSQLKAFGIRHQ--------------- 786
Query: 395 LQGLDFGGNHFSGEIPSTLGNLSSLYEIFLGDNNLSGVIPSSLGNLERLAILEMFANEL- 453
D GN + P+ + SL ++ +G N++ V L L I + N
Sbjct: 787 ---RDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKLTPQLYILDIAD---NPNI 840
Query: 454 SGTIPGDIFNISSLSVSLDLAENHFVGSIP 483
S + I + L + +
Sbjct: 841 SIDVTSVCPYIEAGMYVLLYDKTQDIRGCD 870
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 78.8 bits (194), Expect = 2e-15
Identities = 33/278 (11%), Positives = 73/278 (26%), Gaps = 49/278 (17%)
Query: 368 LVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLGDN 427
L ++ +N S + + + + L N + + L
Sbjct: 274 LKAIWEALDGKNWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAGF 333
Query: 428 NLSGVIPSSLGNLERLAILEMFANELSGTIPGDIFNISSLSVSLDLAENHFVGSIPPRIG 487
G +P ++G L L +L + + + + +S + + +
Sbjct: 334 GAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLD 393
Query: 488 NLKALRCFDVSNNDLSG----------------------------EIPSELGLCSSLEEI 519
+ L D+ + ++ I + + L+ I
Sbjct: 394 YDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQII 453
Query: 520 YLAENFFNGFIPSFFRTS-------------------RGIRKVDLSRNNFFGQIPIFLEA 560
Y A + F + + + V+L Q+P FL
Sbjct: 454 YFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYD 513
Query: 561 L-SLEYLNLSFNDFEGRLPTRGIFANASAISVGGCNRL 597
L L+ LN++ N A ++
Sbjct: 514 LPELQSLNIACNRGIS-AAQLKADWTRLADDEDTGPKI 550
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 230 bits (589), Expect = 1e-67
Identities = 108/537 (20%), Positives = 184/537 (34%), Gaps = 35/537 (6%)
Query: 55 DLRSKALSGLLSPQIGNLSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIP 114
DL L L S N S L+ ++L I+ + L L L+L+ N + P
Sbjct: 38 DLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSP 97
Query: 115 ANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTG-GIPPFLGNLTSLEV 173
+ S + L LV KL F L LK+L + N + +P + NLT+L
Sbjct: 98 GSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVH 157
Query: 174 VSLAGNPFGGNIPDSLGQLKELK----TLGIGGNNLSGSIPPSIYNLSFLVIFSVSENQM 229
V L+ N + L L+E +L + N + I + L ++ N
Sbjct: 158 VDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID-FIQDQAFQGIKLHELTLRGNFN 216
Query: 230 HGSLPPSLGLYFPNLKLFQTNENFFSGSIPISLSNASKLE--------YVEIASNSFFGK 281
++ + L + + F + + S +E + + F
Sbjct: 217 SSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSD 276
Query: 282 LSVNFGGMKNLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIA 341
V F + N+S + L ++ + + K Q LS+ Q +
Sbjct: 277 DIVKFHCLANVSAMSLAGVSIKY--------LEDVPKHFKWQSLSIIRCQLKQ---FPTL 325
Query: 342 NLSSQLQILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSIPK--EMGKLLNLQGLD 399
+L L+ L L N+ SI L +L L N + S +L+ LD
Sbjct: 326 DLPF-LKSLTLTMNKG--SISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLD 382
Query: 400 FGGNHFSGEIPSTLGNLSSLYEIFLGDNNLSGVIP-SSLGNLERLAILEMFANELSGTIP 458
N + + L L + + L V S+ +LE+L L++
Sbjct: 383 LSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFD 441
Query: 459 GDIFNISSLSVSLDLAENHFVGSIPPRI-GNLKALRCFDVSNNDLSGEIPSELGLCSSLE 517
G ++SL+ L +A N F + + N L D+S L L+
Sbjct: 442 GIFLGLTSLNT-LKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQ 500
Query: 518 EIYLAENFFNGFIPSFFRTSRGIRKVDLSRNNFFGQIPIFLEAL-SLEYLNLSFNDF 573
+ ++ N S + + +D S N I SL + NL+ N
Sbjct: 501 LLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSV 557
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 181 bits (462), Expect = 1e-49
Identities = 90/507 (17%), Positives = 158/507 (31%), Gaps = 35/507 (6%)
Query: 99 LETLLLSDNSLVGKIPANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLT 158
+ + LS N L + S S L L L ++ + L+ L L L N +
Sbjct: 34 TKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQ 93
Query: 159 GGIPPFLGNLTSLEVVSLAGNPFGGNIPDSLGQLKELKTLGIGGNNLSG-SIPPSIYNLS 217
P LTSLE + +GQL LK L + N + +P NL+
Sbjct: 94 SFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLT 153
Query: 218 FLVIFSVSENQMHGSLPPSLGLYFPNLKLFQT---NENFFSGSIPISLSNASKLEYVEIA 274
LV +S N + L N ++ + + N I KL + +
Sbjct: 154 NLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID-FIQDQAFQGIKLHELTLR 212
Query: 275 SNSFFGKL-SVNFGGMKNLSYLILEYNNLGSGESDEMGFMNSLANCSKLQV--LSLGGNQ 331
N + + L L + E+ + + + + L
Sbjct: 213 GNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTN 272
Query: 332 FRGALPHSIANLSSQLQILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFT--------- 382
L++ + + L + + SL Q
Sbjct: 273 DFSDDIVKFHCLAN-VSAMSLAGVSI--KYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPF 329
Query: 383 ----------GSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLGNL--SSLYEIFLGDNNLS 430
GSI + L +L LD N S + +L +SL + L N
Sbjct: 330 LKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI 389
Query: 431 GVIPSSLGNLERLAILEMFANELSGTIPGDIFNISSLSVSLDLAENHFVGSIPPRIGNLK 490
++ ++ LE L L+ + L F + LD++ + L
Sbjct: 390 -IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLT 448
Query: 491 ALRCFDVSNNDLSGEIPSE-LGLCSSLEEIYLAENFFNGFIPSFFRTSRGIRKVDLSRNN 549
+L ++ N S ++L + L++ F T ++ +++S NN
Sbjct: 449 SLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNN 508
Query: 550 FFGQIP-IFLEALSLEYLNLSFNDFEG 575
+ + SL L+ SFN E
Sbjct: 509 LLFLDSSHYNQLYSLSTLDCSFNRIET 535
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 135 bits (343), Expect = 7e-34
Identities = 74/405 (18%), Positives = 134/405 (33%), Gaps = 28/405 (6%)
Query: 62 SGLLSPQIGNLSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPAN-LSYC 120
L N +++ N I I + + +L L L N I L
Sbjct: 170 VNDLQFLRENPQVNLSLDMSLNPID-FIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNL 228
Query: 121 SRLTVLVLGNNKLVGSIPFEFVSLY--------KLKQLALPMNNLTGGIPPFLGNLTSLE 172
+ L V L + E + + L N L ++
Sbjct: 229 AGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVS 288
Query: 173 VVSLAGNPFGGNIPDSLGQLKELKTLGIGGNNLSGSIPPSIYNLSFLVIFSVSENQMHGS 232
+SLAG + + + + ++L I L P +L FL +++ N+ S
Sbjct: 289 AMSLAGVSI--KYLEDVPKHFKWQSLSIIRCQLK-QFPTL--DLPFLKSLTLTMNKGSIS 343
Query: 233 LPPSLGLYFPNLKLFQTNENFFSGSIPISLSN--ASKLEYVEIASNSFFGKLSVNFGGMK 290
+ P+L + N S S S S+ + L +++++ N +S NF G++
Sbjct: 344 FK---KVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLE 399
Query: 291 NLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLSSQLQIL 350
L +L +++ L + ++ + KL L + + L+S L L
Sbjct: 400 ELQHLDFQHSTL-----KRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTS-LNTL 453
Query: 351 VLGTNQLYGSIPSGI-GNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEI 409
+ N + S + N NL L + Q L LQ L+ N+
Sbjct: 454 KMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLD 513
Query: 410 PSTLGNLSSLYEIFLGDNNLSGVIPSSLGNLERLAILEMFANELS 454
S L SL + N + + LA + N ++
Sbjct: 514 SSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVA 558
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 129 bits (327), Expect = 8e-32
Identities = 62/379 (16%), Positives = 118/379 (31%), Gaps = 46/379 (12%)
Query: 61 LSGLLSPQIGNLSFLREINLMNNTIQGEIPLE------FGRLRRL--ETLLLSDNSLVGK 112
S ++ + NL+ L L+ + E LE L + + L+ +
Sbjct: 217 SSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSD 276
Query: 113 IPANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTGGIPPFLGNLTSLE 172
+ ++ + L + + +K + L++ L P +L L+
Sbjct: 277 DIVKFHCLANVSAMSLAGVSI--KYLEDVPKHFKWQSLSIIRCQLK-QFPTL--DLPFLK 331
Query: 173 VVSLAGNPFGGNIPDSLGQLKELKTLGIGGNNLSGSIPPSIYNLSFLVIFSVSENQMHGS 232
++L N G+I L L L + N LS S S +L
Sbjct: 332 SLTLTMNK--GSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLG--------------- 374
Query: 233 LPPSLGLYFPNLKLFQTNENFFSGSIPISLSNASKLEYVEIASNSFFGKLSVN-FGGMKN 291
+L+ + N + + +L++++ ++ + F ++
Sbjct: 375 --------TNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEK 425
Query: 292 LSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLSSQLQILV 351
L YL + Y N + L L + GN F+ ++ ++ L L
Sbjct: 426 LLYLDISYTNTKIDFDG------IFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLD 479
Query: 352 LGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIPS 411
L QL L L L N +L +L LD N
Sbjct: 480 LSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGI 539
Query: 412 TLGNLSSLYEIFLGDNNLS 430
SL L +N+++
Sbjct: 540 LQHFPKSLAFFNLTNNSVA 558
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 86.6 bits (215), Expect = 6e-18
Identities = 31/154 (20%), Positives = 57/154 (37%), Gaps = 2/154 (1%)
Query: 55 DLRSKALSGLLSPQ-IGNLSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKI 113
D + L + +L L +++ + + F L L TL ++ NS
Sbjct: 405 DFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNT 464
Query: 114 PAN-LSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTGGIPPFLGNLTSLE 172
+N + + LT L L +L F +L++L+ L + NNL L SL
Sbjct: 465 LSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLS 524
Query: 173 VVSLAGNPFGGNIPDSLGQLKELKTLGIGGNNLS 206
+ + N + K L + N+++
Sbjct: 525 TLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVA 558
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 166 bits (422), Expect = 2e-44
Identities = 90/543 (16%), Positives = 183/543 (33%), Gaps = 31/543 (5%)
Query: 46 FCEWEGITCDLRSKALSGLLSPQIGNLSFLREINLMNNTIQGEIPLEFGRLRRLETLLLS 105
IT + + ++L N ++ F L+ L LS
Sbjct: 4 VEVVPNITYQCMELNFYKIPD---NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLS 60
Query: 106 DNSLVGKIPANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTGGIPPFL 165
+ S L+ L+L N + F L L++L NL +
Sbjct: 61 RCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPI 120
Query: 166 GNLTSLEVVSLAGNPFG-GNIPDSLGQLKELKTLGIGGNNLSGSIPPSIYNLSFLVIFSV 224
G+L +L+ +++A N +P+ L L+ L + N + + L + + ++
Sbjct: 121 GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNL 180
Query: 225 ----SENQMHGSLPPSLGLYFPNLKLFQTN--ENFFSGSIP-ISLSNASKLEYVEIASNS 277
S N M+ + P F ++L + NF S ++ + + LE +
Sbjct: 181 SLDLSLNPMN-FIQPGA---FKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGE 236
Query: 278 FFGK---LSVNFGGMKNLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRG 334
F + + ++ L L +E L + ++ + + SL
Sbjct: 237 FRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER 296
Query: 335 ALPHSIANLSSQLQILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSIPKEMGKLLN 394
S L+++ Q L +L L N+ + + L +
Sbjct: 297 VKDFSYNFGWQHLELVNCKFGQF------PTLKLKSLKRLTFTSNKGGNAFSEV--DLPS 348
Query: 395 LQGLDFGGN--HFSGEIPSTLGNLSSLYEIFLGDNNLSGVIPSSLGNLERLAILEMFANE 452
L+ LD N F G + +SL + L N + + S+ LE+L L+ +
Sbjct: 349 LEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSN 407
Query: 453 LSGTIPGDIFNISSLSVSLDLAENHFVGSIPPRIGNLKALRCFDVSNNDLSGEIPSE-LG 511
L +F + LD++ H + L +L ++ N +
Sbjct: 408 LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFT 467
Query: 512 LCSSLEEIYLAENFFNGFIPSFFRTSRGIRKVDLSRNNFFGQIPIFLEAL-SLEYLNLSF 570
+L + L++ P+ F + ++ ++++ N + L SL+ + L
Sbjct: 468 ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHT 527
Query: 571 NDF 573
N +
Sbjct: 528 NPW 530
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 129 bits (327), Expect = 5e-32
Identities = 74/457 (16%), Positives = 139/457 (30%), Gaps = 52/457 (11%)
Query: 53 TCDLRSKALSGLLSPQIGNLSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSL-VG 111
T L + L LS L+++ + + G L+ L+ L ++ N +
Sbjct: 80 TLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF 139
Query: 112 KIPANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLK----QLALPMNNLTGGIPPFLGN 167
K+P S + L L L +NK+ + L+++ L L +N + I P
Sbjct: 140 KLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF-IQPGAFK 198
Query: 168 LTSLEVVSLAGNPFGGNIPD-SLGQLKELKTLGI------GGNNLSGSIPPSIYNLSFLV 220
L ++L N N+ + L L+ + NL ++ L L
Sbjct: 199 EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLT 258
Query: 221 IFSVSENQMHGSLPPSLGLYFPNLKLFQTNENFFSGSIPISLSNASKLEYVEIASNSFFG 280
I + L + L+ + + + S +++E+ + F
Sbjct: 259 IEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQ 318
Query: 281 ------------KLSVN-------FGGMKNLSYLILEYNNLGSGESDEMGFMN------- 314
+ N + +L +L L N L
Sbjct: 319 FPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYL 378
Query: 315 ------------SLANCSKLQVLSLGGNQFRGALPHSIANLSSQLQILVLGTNQLYGSIP 362
+ +L+ L + + S+ L L + +
Sbjct: 379 DLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN 438
Query: 363 SGIGNLVNLYSLQTEENQFTGSIPKEM-GKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYE 421
L +L L+ N F + ++ +L NL LD P+ +LSSL
Sbjct: 439 GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQV 498
Query: 422 IFLGDNNLSGVIPSSLGNLERLAILEMFANELSGTIP 458
+ + N L V L L + + N + P
Sbjct: 499 LNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 535
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 122 bits (307), Expect = 2e-29
Identities = 91/502 (18%), Positives = 155/502 (30%), Gaps = 61/502 (12%)
Query: 101 TLLLSDNSLVGKIPANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTGG 160
T + + KIP NL L L N L + F S +L+ L L +
Sbjct: 11 TYQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTI 67
Query: 161 IPPFLGNLTSLEVVSLAGNPFGGNIPDSLGQLKELKTLGIGGNNLSGSIPPSIYNLSFLV 220
+L+ L + L GNP + L L+ L NL+ I +L L
Sbjct: 68 EDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLK 127
Query: 221 IFSVSENQMHGSLPPSLGLYFPNLKLFQTNENFFSGSIPISLSNASKLEYVEIASNSFFG 280
+V+ N + S +P SN + LE+++++SN
Sbjct: 128 ELNVAHNLIQ------------------------SFKLPEYFSNLTNLEHLDLSSNKIQS 163
Query: 281 KLSVNFGGMKNLSY----LILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGAL 336
+ + + L L N + + + L L+L N +
Sbjct: 164 IYCTDLRVLHQMPLLNLSLDLSLNPMNFIQP------GAFKEIR-LHKLTLRNNFDSLNV 216
Query: 337 PHSIANLSSQLQILVL------GTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSIPKEMG 390
+ + L++ L L S + L NL + + +
Sbjct: 217 MKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIID 276
Query: 391 ---KLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLGDNNLSGVIPSSLGNLERLAILE 447
L N+ + N + L + L +L+RL
Sbjct: 277 LFNCLTNVSSFSLVSVTIE-RVKDFSYN-FGWQHLELVNCKFGQFPTLKLKSLKRLTFTS 334
Query: 448 MFANELSGTIPGDIFNISSLSVSLDLAEN--HFVGSIPPRIGNLKALRCFDVSNNDLSGE 505
N+ ++ SL LDL+ N F G +L+ D+S N +
Sbjct: 335 ---NKGGNAFSE--VDLPSLEF-LDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-T 387
Query: 506 IPSELGLCSSLEEIYLAENFFNGFIP-SFFRTSRGIRKVDLSRNNFFGQIPIFLEAL-SL 563
+ S LE + + S F + R + +D+S + L SL
Sbjct: 388 MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL 447
Query: 564 EYLNLSFNDFEGRLPTRGIFAN 585
E L ++ N F+ IF
Sbjct: 448 EVLKMAGNSFQENFL-PDIFTE 468
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 97.9 bits (244), Expect = 1e-21
Identities = 58/372 (15%), Positives = 122/372 (32%), Gaps = 31/372 (8%)
Query: 232 SLPPSLGLYFPNLKLFQTNENFFSGSIPISLSNASKLEYVEIASNSFFGKLSVNFGGMKN 291
+P +L + K + N S + +L+ ++++ + + +
Sbjct: 21 KIPDNL---PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSH 77
Query: 292 LSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLSSQLQILV 351
LS LIL N + S + + S LQ L I +L + L+ L
Sbjct: 78 LSTLILTGNPIQSLALG------AFSGLSSLQKLVAVETNLASLENFPIGHLKT-LKELN 130
Query: 352 LGTNQL-YGSIPSGIGNLVNLYSLQTEENQFTGSIPKEMGKLLNLQG----LDFGGNHFS 406
+ N + +P NL NL L N+ ++ L + LD N +
Sbjct: 131 VAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN 190
Query: 407 GEIPSTLGNLSSLYEIFLGDNNLSGVIPS-SLGNLERLAILEMFANELSG-----TIPGD 460
I L+++ L +N S + + L L + + E
Sbjct: 191 -FIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKS 249
Query: 461 IF-NISSLSVS-LDLAENHFVGSIPPRI-GNLKALRCFDVSNNDLSGEIPSELGLCSSLE 517
+ +L++ LA + + L + F + + + + +
Sbjct: 250 ALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYN-FGWQ 307
Query: 518 EIYLAENFFNGFIPSFFRTSRGIRKVDLSRNNFFGQIPIFLEALSLEYLNLSFNDFEGRL 577
+ L F F ++ ++++ + N G ++ SLE+L+LS N +
Sbjct: 308 HLELVNCKFGQFPTLKLKS---LKRLTFTSNKG-GNAFSEVDLPSLEFLDLSRNGLSFKG 363
Query: 578 PTRGIFANASAI 589
+++
Sbjct: 364 CCSQSDFGTTSL 375
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 89.8 bits (223), Expect = 5e-19
Identities = 68/365 (18%), Positives = 120/365 (32%), Gaps = 34/365 (9%)
Query: 65 LSPQIGNLSFLREINLMNNTIQGEIPLE-FGRLRRLETLLL------SDNSLVGKIPANL 117
+ P L ++ L NN + L LE L ++ +L + L
Sbjct: 192 IQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSAL 251
Query: 118 SYCSRLTVLVLGNNKL---VGSIPFEFVSLYKLKQLALPMNNLTGGIPP--FLGNLTSLE 172
LT+ L + I F L + +L + + + LE
Sbjct: 252 EGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER-VKDFSYNFGWQHLE 310
Query: 173 VVSLAGNPFGGNIPDSLGQLKELKTLGIGGNNLSGSIPPSIYNLSFLVIFSVSENQMHG- 231
+V+ F +LK LK L N + S +L L +S N +
Sbjct: 311 LVNCKFGQFPTL------KLKSLKRLTFTSNKGGNA--FSEVDLPSLEFLDLSRNGLSFK 362
Query: 232 SLPPSLGLYFPNLKLFQTNENFFSGSIPISLSNASKLEYVEIASNSFFGKLSVN-FGGMK 290
+LK + N ++ + +LE+++ ++ + F ++
Sbjct: 363 GCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLR 421
Query: 291 NLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLSSQLQIL 350
NL YL + + + + S L+VL + GN F+ I L L
Sbjct: 422 NLIYLDISHTHTRVAFNG------IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL 475
Query: 351 VLGTNQLYGSIPSGI-GNLVNLYSLQTEENQFTGSIPKEM-GKLLNLQGLDFGGNHFSGE 408
L QL + +L +L L NQ S+P + +L +LQ + N +
Sbjct: 476 DLSQCQL-EQLSPTAFNSLSSLQVLNMASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCS 533
Query: 409 IPSTL 413
P
Sbjct: 534 CPRID 538
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 166 bits (422), Expect = 1e-43
Identities = 116/584 (19%), Positives = 201/584 (34%), Gaps = 56/584 (9%)
Query: 47 CEWEGITCDLRSKALSGLLSPQIGNLSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSD 106
C ++G R L+ + L+ + L N I+ F L +L+ L L
Sbjct: 2 CSFDGRIAFYRFCNLTQVPQ----VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGS 57
Query: 107 NSLVGKIPAN-LSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTGGIPP-- 163
I L +L LG++K+ P F L+ L +L L L+ +
Sbjct: 58 QYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDG 117
Query: 164 FLGNLTSLEVVSLAGNPFGG-NIPDSLGQLKELKTLGIGGNNLSGSIPPSIYNLSF--LV 220
+ NL +L + L+ N + S G+L LK++ N + + L L
Sbjct: 118 YFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLS 177
Query: 221 IFSVSENQMHGSLPPSLGLYFPNLKLFQTNE-----------------NFFSGSIPISLS 263
FS++ N ++ + G + N S S SL
Sbjct: 178 FFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLI 237
Query: 264 NASKLEYVEIASNSFFGKLSVNFGGMK--NLSYLILEYNNLGSGESDEMGFMNSLANCSK 321
A + ++ F G+ ++ +L L + + S S
Sbjct: 238 LAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNS------RVFETLKD 291
Query: 322 LQVLSLGGNQFRGALPHSIANLSSQLQILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQF 381
L+VL+L N+ + L + LQ+L L N L S L + + ++N
Sbjct: 292 LKVLNLAYNKINKIADEAFYGLDN-LQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHI 350
Query: 382 TGSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLGDNNLSGVIPSSLGNLE 441
+ L LQ LD N +T+ + S+ +IFL N L + +L
Sbjct: 351 AIIQDQTFKFLEKLQTLDLRDNAL-----TTIHFIPSIPDIFLSGNKLVTLPKINL---- 401
Query: 442 RLAILEMFANELSGTIPGDIF-NISSLSVSLDLAENHFVGSIPPRI-GNLKALRCFDVSN 499
++ + N L + L + L L +N F + +L +
Sbjct: 402 TANLIHLSENRLENLDILYFLLRVPHLQI-LILNQNRFSSCSGDQTPSENPSLEQLFLGE 460
Query: 500 NDLSGEIPSELGL-----CSSLEEIYLAENFFNGFIPSFFRTSRGIRKVDLSRNNFFGQI 554
N L +EL S L+ +YL N+ N P F +R + L+ N +
Sbjct: 461 NMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLT-VL 519
Query: 555 PIFLEALSLEYLNLSFNDFEGRLPTRGIFANASAISVGGCNRLC 598
+LE L++S N P +F + S + + +C
Sbjct: 520 SHNDLPANLEILDISRNQL--LAPNPDVFVSLSVLDITHNKFIC 561
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 44.0 bits (104), Expect = 1e-04
Identities = 25/125 (20%), Positives = 39/125 (31%), Gaps = 9/125 (7%)
Query: 466 SLSVSLDLAENHFVG--SIPPRIGNLKALRCFDVSNNDLSGEIPSELGLCSSLEEIYLAE 523
S S +A F +P + + L +S N + S L+ + L
Sbjct: 1 SCSFDGRIAFYRFCNLTQVPQVLNTTERL---LLSFNYIRTVTASSFPFLEQLQLLELGS 57
Query: 524 NFFNGFI-PSFFRTSRGIRKVDLSRNNFFGQIP--IFLEALSLEYLNLSFNDFEGRLPTR 580
+ I FR +R +DL + + F L L L F +
Sbjct: 58 QYTPLTIDKEAFRNLPNLRILDLGSSKI-YFLHPDAFQGLFHLFELRLYFCGLSDAVLKD 116
Query: 581 GIFAN 585
G F N
Sbjct: 117 GYFRN 121
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 157 bits (398), Expect = 5e-42
Identities = 89/474 (18%), Positives = 173/474 (36%), Gaps = 44/474 (9%)
Query: 98 RLETLLLSDNSLVGKIPANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPMNNL 157
L + ++ ++ + +I + + VLG + ++ L ++ L +
Sbjct: 2 PLGSATITQDTPINQIF-TDTALAEKMKTVLGKTNVTDTVSQT--DLDQVTTLQADRLGI 58
Query: 158 TGGIPPFLGNLTSLEVVSLAGNPFGGNIPDSLGQLKELKTLGIGGNNLSGSIPPSIYNLS 217
+ L +L ++ + N P L L +L + + N ++ P + NL+
Sbjct: 59 K--SIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLT 112
Query: 218 FLVIFSVSENQMHGSLPPSLGLYFPNLKLFQTNENFFSGSIPISLSNASKLEYVEIASNS 277
L ++ NQ+ + P L NL + + N S +LS + L+ + +
Sbjct: 113 NLTGLTLFNNQIT-DIDPLKNL--TNLNRLELSSNTISD--ISALSGLTSLQQLSFGNQV 167
Query: 278 FFGKLSVNFGGMKNLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGALP 337
+ L L + N + ++ LA + L+ L NQ P
Sbjct: 168 ---TDLKPLANLTTLERLDISSNKVSD--------ISVLAKLTNLESLIATNNQISDITP 216
Query: 338 HSIANLSSQLQILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSIPKEMGKLLNLQG 397
+ L++ L L L NQL + +L NL L NQ + P + L L
Sbjct: 217 --LGILTN-LDELSLNGNQL--KDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTE 269
Query: 398 LDFGGNHFSGEIPSTLGNLSSLYEIFLGDNNLSGVIPSSLGNLERLAILEMFANELSGTI 457
L G N S P L L++L + L +N L + P + NL+ L L ++ N +S
Sbjct: 270 LKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDIS 325
Query: 458 PGDIFNISSLSVSLDLAENHFVGSIPPRIGNLKALRCFDVSNNDLSGEIPSELGLCSSLE 517
P + +++ L L N S + NL + +N +S P L + +
Sbjct: 326 P--VSSLTKLQ-RLFFYNNKV--SDVSSLANLTNINWLSAGHNQISDLTP--LANLTRIT 378
Query: 518 EIYLAENFFNGFIPSFFRTSRGIRKVDLSRNNFFGQIPIFLEALSLEYLNLSFN 571
++ L + + ++ I + + S ++++N
Sbjct: 379 QLGLNDQAWTNAPVNYKANVS-IPNTVKNVTGALIAPATISDGGSYTEPDITWN 431
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 153 bits (388), Expect = 1e-40
Identities = 96/460 (20%), Positives = 167/460 (36%), Gaps = 74/460 (16%)
Query: 69 IGNLSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLTVLVL 128
L+ + L + + L ++ TL + K + Y + LT +
Sbjct: 20 DTALAEKMKTVLGKTNVTDTVSQT--DLDQVTTLQADRLGI--KSIDGVEYLNNLTQINF 75
Query: 129 GNNKLVGSIPFEFVSLYKLKQLALPMNNLTGGIPPFLGNLTSLEVVSLAGNPFGGNIPDS 188
NN+L P + +L KL + + N + L NLT+L ++L N D
Sbjct: 76 SNNQLTDITPLK--NLTKLVDILMNNNQIAD--ITPLANLTNLTGLTLFNNQI--TDIDP 129
Query: 189 LGQLKELKTLGIGGNNLSGSIPPSIYNLSFLVIFSVSENQMHGSLPPSLGLYFPNLKLFQ 248
L L L L + N +S ++ L+ L S
Sbjct: 130 LKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFGNQV-------------------- 167
Query: 249 TNENFFSGSIPISLSNASKLEYVEIASNSFFGKLSV--NFGGMKNLSYLILEYNNLGSGE 306
+ L+N + LE ++I+SN K+S + NL LI N +
Sbjct: 168 --------TDLKPLANLTTLERLDISSN----KVSDISVLAKLTNLESLIATNNQISD-- 213
Query: 307 SDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLSSQLQILVLGTNQLYGSIPSGIG 366
+ L + L LSL GNQ + ++A+L+ L L L NQ+ P +
Sbjct: 214 ------ITPLGILTNLDELSLNGNQLKD--IGTLASLT-NLTDLDLANNQISNLAP--LS 262
Query: 367 NLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLGD 426
L L L+ NQ + P + L L L+ N P + NL +L + L
Sbjct: 263 GLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYF 318
Query: 427 NNLSGVIPSSLGNLERLAILEMFANELSGTIPGDIFNISSLS--VSLDLAENHFVGSIPP 484
NN+S + P + +L +L L + N++S D+ ++++L+ L N P
Sbjct: 319 NNISDISP--VSSLTKLQRLFFYNNKVS-----DVSSLANLTNINWLSAGHNQISDLTP- 370
Query: 485 RIGNLKALRCFDVSNNDLSGEIPSELGLCSSLEEIYLAEN 524
+ NL + +++ + + S +
Sbjct: 371 -LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTG 409
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 149 bits (379), Expect = 2e-39
Identities = 97/453 (21%), Positives = 162/453 (35%), Gaps = 43/453 (9%)
Query: 55 DLRSKALSGLLSPQIGNLSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIP 114
+ + + L+ L +IN NN + PL L +L +L+++N + P
Sbjct: 52 QADRLGIKSI--DGVEYLNNLTQINFSNNQLTDITPL--KNLTKLVDILMNNNQIADITP 107
Query: 115 ANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTGGIPPFLGNLTSLEVV 174
L+ + LT L L NN++ P + +L L +L L N ++ L LTSL+ +
Sbjct: 108 --LANLTNLTGLTLFNNQITDIDPLK--NLTNLNRLELSSNTISD--ISALSGLTSLQQL 161
Query: 175 SLAGNPFGGNIPDSLGQLKELKTLGIGGNNLSGSIPPSIYNLSFLVIFSVSENQMHGSLP 234
S L L L+ L I N +S + L+ L + NQ+ P
Sbjct: 162 SFGNQVTD---LKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITP 216
Query: 235 PSLGLYFPNLKLFQTNENFFSGSIPISLSNASKLEYVEIASNSFFGKLSVNFGGMKNLSY 294
NL N N +L++ + L +++A+N G+ L+
Sbjct: 217 LG---ILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISN--LAPLSGLTKLTE 269
Query: 295 LILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLSSQLQILVLGT 354
L L N + + ++ LA + L L L NQ I+NL L L L
Sbjct: 270 LKLGANQISN--------ISPLAGLTALTNLELNENQLED--ISPISNL-KNLTYLTLYF 318
Query: 355 NQLYGSIPSGIGNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLG 414
N + P + +L L L N+ + + L N+ L G N S P L
Sbjct: 319 NNISDISP--VSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LA 372
Query: 415 NLSSLYEIFLGDNNLSGVIPSSLGNLERLAILEMFANELSGTIPGDIFNISSLSVSLDLA 474
NL+ + ++ L D + + N+ ++ L P I + S + D+
Sbjct: 373 NLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGAL--IAPATISDGGSYT-EPDIT 429
Query: 475 ENHFVGSIPPRIGNLKALRCFDVSNNDLSGEIP 507
N SG +
Sbjct: 430 WNL-PSYTNEVSYTFSQPVTIGKGTTTFSGTVT 461
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 152 bits (387), Expect = 1e-40
Identities = 98/513 (19%), Positives = 169/513 (32%), Gaps = 90/513 (17%)
Query: 64 LLSPQIGNLSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPANLS----- 118
++P+ + +FL+E ++ + E+P+E ++ + + P
Sbjct: 2 FINPRNVSNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREM 60
Query: 119 --------YCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTGGIPPFLGNLTS 170
+ L L N L S+P L+ L N+LT +P +L S
Sbjct: 61 AVSRLRDCLDRQAHELELNNLGLS-SLP---ELPPHLESLVASCNSLT-ELPELPQSLKS 115
Query: 171 LEVVSLAGNPFGGNIPDSLGQLKELKTLGIGGNNLSGSIPPSIYNLSFLVIFSVSENQMH 230
L V + P L+ LG+ N L P + N SFL I V N +
Sbjct: 116 LLVDNNNLKALSDLPP-------LLEYLGVSNNQLEKL--PELQNSSFLKIIDVDNNSLK 166
Query: 231 GSLPPSLGLYFPNLKLFQTNENFFSGSIPISLSNASKLEYVEIASNSFFGKLSVNFGGMK 290
LP P+L+ N +P L N L + +N L
Sbjct: 167 -KLPDLP----PSLEFIAAGNNQLE-ELP-ELQNLPFLTAIYADNN----SLKKLPDLPL 215
Query: 291 NLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLSSQLQIL 350
+L ++ N L + L N L + N + LP + L+ L
Sbjct: 216 SLESIVAGNNILEE--------LPELQNLPFLTTIYADNNLLK-TLPDLPPS----LEAL 262
Query: 351 VLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSIPKEMGKL--------------LNLQ 396
+ N L +P +L L + + + +P + L +L+
Sbjct: 263 NVRDNYL-TDLPELPQSLTFLDVSENIFSGLS-ELPPNLYYLNASSNEIRSLCDLPPSLE 320
Query: 397 GLDFGGNHFSGEIPSTLGNLSSLYEIFLGDNNLSGVIPSSLGNLERLAILEMFANELSGT 456
L+ N E+P+ L L N+L+ +P NL++L + N L
Sbjct: 321 ELNVSNNKLI-ELPALPPRLERLI---ASFNHLA-EVPELPQNLKQLHVEY---NPLR-E 371
Query: 457 IPGDIFNISSLSVSLDLAENHFVGSIPPRIGNLKALRCFDVSNNDLSGEIPSELGLCSSL 516
P ++ L ++ L +P NLK L V N L E P S+
Sbjct: 372 FPDIPESVEDLRMNSHL------AEVPELPQNLKQL---HVETNPLR-EFPDIPE---SV 418
Query: 517 EEIYLAENFFNGFIPSFFRTSRGIRKVDLSRNN 549
E++ + T+ + ++
Sbjct: 419 EDLRMNSERVVDPYEFAHETTDKLEDDVFEHHH 451
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 118 bits (299), Expect = 8e-29
Identities = 74/460 (16%), Positives = 141/460 (30%), Gaps = 99/460 (21%)
Query: 161 IPPFLGNLTSLEVVSLAGNPFGGNIPDSLGQLKELKTLGIGGNNLSGSIPPSIYNLSFLV 220
I P + T L+ + +P +K + + PP +
Sbjct: 3 INPRNVSNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMA 61
Query: 221 IFSVSENQMHG------------SLPPSLGLYFPNLKLFQTNENFFSGSIPISLSNASKL 268
+ + + SLP +L+ + N + +P + L
Sbjct: 62 VSRLRDCLDRQAHELELNNLGLSSLPELPP----HLESLVASCNSLT-ELPELPQSLKSL 116
Query: 269 EYVEIASNSFFGKLSVNFGGMKNLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLG 328
+ L YL + N L + L N S L+++ +
Sbjct: 117 LVDNNNLKALSDLPP-------LLEYLGVSNNQLEK--------LPELQNSSFLKIIDVD 161
Query: 329 GNQFRGALPHSIANLS------------------SQLQILVLGTNQLYGSIPSGIGNLVN 370
N + LP +L L + N L +P +L +
Sbjct: 162 NNSLK-KLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSL-KKLPDLPLSLES 219
Query: 371 LYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLGDNNLS 430
+ + N E+ L L + N +P +L +L + DN L+
Sbjct: 220 IVA---GNNILE--ELPELQNLPFLTTIYADNNLLK-TLPDLPPSLEALN---VRDNYLT 270
Query: 431 GVIPSSLGNLERLAILEMFANELSGTIPGDIFNISSLSVS----------------LDLA 474
+P +L L + E + LS P N+ L+ S L+++
Sbjct: 271 D-LPELPQSLTFLDVSENIFSGLSELPP----NLYYLNASSNEIRSLCDLPPSLEELNVS 325
Query: 475 ENHFVGSIPPRIGNLKALRCFDVSNNDLSGEIPSELGLCSSLEEIYLAENFFNGFIPSFF 534
N + +P L+ L S N L+ E+P +L+++++ N F
Sbjct: 326 NNKLI-ELPALPPRLERL---IASFNHLA-EVPELPQ---NLKQLHVEYNPLREFPDIPE 377
Query: 535 RTSRGIRKVDLSRNNFFGQIPIFLEALSLEYLNLSFNDFE 574
DL N+ ++P + +L+ L++ N
Sbjct: 378 SVE------DLRMNSHLAEVPELPQ--NLKQLHVETNPLR 409
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 117 bits (296), Expect = 2e-28
Identities = 86/439 (19%), Positives = 134/439 (30%), Gaps = 91/439 (20%)
Query: 65 LSPQIGNLSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLT 124
L +L L N + PL LE L +S+N L K+P L S L
Sbjct: 106 LPELPQSLKSLLVDNNNLKALSDLPPL-------LEYLGVSNNQLE-KLP-ELQNSSFLK 156
Query: 125 VLVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTGGIPPFLGNLTSLEVVSLAGNPFGGN 184
++ + NN L +P L+ +A N L P L NL L + N
Sbjct: 157 IIDVDNNSLK-KLP---DLPPSLEFIAAGNNQLE--ELPELQNLPFLTAIYADNNSLK-K 209
Query: 185 IPDSLGQLKELKTLGIGGNNLSGSIPPSIYNLSFLVIFSVSENQMHGSLPPSLGLYFPNL 244
+PD L+ + G N L P + NL FL N + +LP +L
Sbjct: 210 LPDLPLSLESIV---AGNNILE--ELPELQNLPFLTTIYADNNLLK-TLPDLPP----SL 259
Query: 245 KLFQTNENFFSGSIPISLSNASKLEYVEIASNSFFGKLSVNFGGMKNLSYLILEYNNLGS 304
+ +N+ + +P + + L+ E + NL YL N + S
Sbjct: 260 EALNVRDNYLT-DLPELPQSLTFLDVSENIFSGLSELP-------PNLYYLNASSNEIRS 311
Query: 305 GESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLSSQLQILVLGTNQLYGSIPSG 364
L+ L++ N+ LP L + L+ N L +P
Sbjct: 312 ----------LCDLPPSLEELNVSNNKLI-ELPALPPRL----ERLIASFNHL-AEVPEL 355
Query: 365 IGNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFL 424
NL L+ E N P + +L+ N E+P NL L+ +
Sbjct: 356 PQNLKQLH---VEYNPLR-EFPDIPESVEDLRM-----NSHLAEVPELPQNLKQLH---V 403
Query: 425 GDNNLSGVIPSSLGNLERLAILEMFANELSGTIPGDIFNISSLSVSLDLAENHFVGSIPP 484
N L P ++E L + V
Sbjct: 404 ETNPLR-EFPDIPESVE----------------------------DLRMNSERVVDPYEF 434
Query: 485 RIGNLKALRCFDVSNNDLS 503
L ++
Sbjct: 435 AHETTDKLEDDVFEHHHHH 453
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 151 bits (384), Expect = 2e-39
Identities = 90/531 (16%), Positives = 178/531 (33%), Gaps = 40/531 (7%)
Query: 53 TCDLRSKALSGLLSPQIGNLSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGK 112
CD RS++ + + S G + ++ ++L N I + L+ L+L + +
Sbjct: 9 VCDGRSRSFTSIPS---GLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRI-NT 64
Query: 113 IPAN-LSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTG-GIPPFLGNLTS 170
I + L L L +N L F L LK L L N G+ NLT+
Sbjct: 65 IEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTN 124
Query: 171 LEVVSLAGNPFGGNIP-DSLGQLKELKTLGIGGNNLSGSIPPSIYNLSFLVIFSVSENQM 229
L+ + + I L L L I +L S+ ++ + ++ ++
Sbjct: 125 LQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSES 184
Query: 230 HGSLPPSLGLYFPNLKLFQTNENFFSGSIPISLSNASKLEYVEIASNSFFGKLSVNFGGM 289
L +++ + + + L ++ + +F +
Sbjct: 185 A-FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNEL 243
Query: 290 KNLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLSSQLQI 349
L ILE + + +C+ + ++ + + ++
Sbjct: 244 LKLLRYILELSEV------------EFDDCTLNGLGDFNPSES-DVVSELGKVETVTIRR 290
Query: 350 LVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSIPKEMGKLL-NLQGLDFGGNHFSGE 408
L + L+ + + L + + E ++ +P + L +L+ LD N E
Sbjct: 291 LHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEE 349
Query: 409 IPST---LGNLSSLYEIFLGDNNLS--GVIPSSLGNLERLAILEMFANELSGTIPGDIFN 463
G SL + L N+L L L+ L L++ N +P
Sbjct: 350 YLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQW 408
Query: 464 ISSLSVSLDLAENHFVGSIPPRIGNLKALRCFDVSNNDLSGEIPSELGLCSSLEEIYLAE 523
+ L+L+ + + L DVSNN+L L L+E+Y++
Sbjct: 409 PEKMRF-LNLSSTGIR-VVKT--CIPQTLEVLDVSNNNLD-SFSLFL---PRLQELYISR 460
Query: 524 NFFNGFIPSFFRTSRGIRKVDLSRNNFFGQIPIFLEAL-SLEYLNLSFNDF 573
N + + + +SRN + L SL+ + L N +
Sbjct: 461 NKLKTLPDASLFPV--LLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPW 509
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 114 bits (286), Expect = 8e-27
Identities = 73/481 (15%), Positives = 158/481 (32%), Gaps = 58/481 (12%)
Query: 104 LSDNSLVGKIPANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTGGIPP 163
S IP+ L+ + + L L NK+ + + L+ L L + +
Sbjct: 12 GRSRSFT-SIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGD 68
Query: 164 FLGNLTSLEVVSLAGNPFGGNIPDSLGQLKELKTLGIGGNNLSG-SIPPSIYNLSFLVIF 222
+L SLE + L+ N G L LK L + GN + NL+ L
Sbjct: 69 AFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTL 128
Query: 223 SVSENQMHGSLPPSLGLYFPNLKLFQTNENFFSGSIPISLSNASKLEYVEIASNSFFGKL 282
+ + + +L + SL + + ++ + + L
Sbjct: 129 RIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLL 188
Query: 283 SVNFGGMKNLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIAN 342
+ + ++ YL L NL + + S ++ L+ G+ + +
Sbjct: 189 EIFADILSSVRYLELRDTNL---ARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLK 245
Query: 343 LS------SQLQILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSIPKEMGKLLNLQ 396
L S+++ N L PS + L ++ + ++
Sbjct: 246 LLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVE----------------TVTIR 289
Query: 397 GLDFGGNHFSGEIPSTLGNLSSLYEIFLGDNNLSGVIPSSLGNLERLAILEMFANELSGT 456
L + ++ + L + I + ++ + V S +L+ L L++ N +
Sbjct: 290 RLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMV-- 347
Query: 457 IPGDIFNISSLSVSLDLAENHFVGSIPPRIGNLKALRCFDVSNNDLSGEIPSELGLCS-- 514
L + G +L+ +S N L + +
Sbjct: 348 -------------EEYLKNSAC-------KGAWPSLQTLVLSQNHLR-SMQKTGEILLTL 386
Query: 515 -SLEEIYLAENFFNGFIPSFFRTSRGIRKVDLSRNNFFGQIPIFLEALSLEYLNLSFNDF 573
+L + ++ N F+ +P + +R ++LS + + +LE L++S N+
Sbjct: 387 KNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGI-RVVKTCIPQ-TLEVLDVSNNNL 443
Query: 574 E 574
+
Sbjct: 444 D 444
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 105 bits (263), Expect = 6e-24
Identities = 53/421 (12%), Positives = 116/421 (27%), Gaps = 48/421 (11%)
Query: 61 LSGLLSPQIGNLSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPANLSYC 120
S + L+ L E+ + +++ +R + L L + +
Sbjct: 136 FSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADIL 195
Query: 121 SRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTGGIPPFLGNLTSLEVVSLAGNP 180
S + L L + L + + L L
Sbjct: 196 SSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLL-------- 247
Query: 181 FGGNIPDSLGQLKELKTLGIGGNNLSGSIPPSIYNLSFLVIFSVSENQMHGSLPPSLGLY 240
+ + + + + ++ + +
Sbjct: 248 ----------------------RYILELSEVEFDDCTLNGLGDFNPSESD-VVSELGKVE 284
Query: 241 FPNLKLFQTNENFFSGSIPISLSNASKLEYVEIASNSFFGKLSVNFGGMKNLSYLILEYN 300
++ + + + S K++ + + ++ F +K+L +L L N
Sbjct: 285 TVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSEN 344
Query: 301 NLGSGESDEMGFMNSLANCSKLQVLSLGGNQFR--GALPHSIANLSSQLQILVLGTNQLY 358
+ + + LQ L L N R + L + L L + N
Sbjct: 345 LMVEEYLKNSACKGAWPS---LQTLVLSQNHLRSMQKTGEILLTLKN-LTSLDISRNTF- 399
Query: 359 GSIPSGIGNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSS 418
+P + L + L+ LD N+ L L
Sbjct: 400 HPMPDSCQWPEKMRFLNLSSTGIR-VVKT--CIPQTLEVLDVSNNNLD-SFSLFLPRLQE 455
Query: 419 LYEIFLGDNNLSGVIPSSLGNLERLAILEMFANELSGTIPGDIFNISSLSVSLDLAENHF 478
LY + N L + +SL L ++++ N+L ++P IF+ + + L N +
Sbjct: 456 LY---ISRNKLKTLPDASL--FPVLLVMKISRNQLK-SVPDGIFDRLTSLQKIWLHTNPW 509
Query: 479 V 479
Sbjct: 510 D 510
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 98.3 bits (245), Expect = 9e-22
Identities = 59/388 (15%), Positives = 130/388 (33%), Gaps = 20/388 (5%)
Query: 202 GNNLSGSIPPSIYNLSFLVIFSVSENQMHGSLPPSLGLYFPNLKLFQTNENFFSGSIPIS 261
+ + SIP + + + +S N++ + NL++ + + +
Sbjct: 14 SRSFT-SIPSGL--TAAMKSLDLSFNKIT-YIGHGDLRACANLQVLILKSSRINTIEGDA 69
Query: 262 LSNASKLEYVEIASNSFFGKLSVNFGGMKNLSYLILEYNNLGSGESDEMGFMNSLANCSK 321
+ LE+++++ N S FG + +L YL L N +G + N +
Sbjct: 70 FYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPY-----QTLGVTSLFPNLTN 124
Query: 322 LQVLSLGGNQFRGALPHSIANLSSQLQILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQF 381
LQ L +G + + + L L + L + ++ +++ L ++
Sbjct: 125 LQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSES 184
Query: 382 TGSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLGDNNLSGVIPSSLGNLE 441
+ L +++ L+ + + S L + S + S L
Sbjct: 185 AFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELL 244
Query: 442 RLAILEMFANELSGTIPGDIFNISSLSVSLDLAENHFVGSIPPRIGNLKALRCFDVSNND 501
+L + +E+ F+ +L+ D + +R +
Sbjct: 245 KLLRYILELSEVE-------FDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFY 297
Query: 502 LSGEIPSELGLCSSLEEIYLAENFFNGFIPSFFRTSRGIRKVDLSRNNF---FGQIPIFL 558
L ++ + L ++ I + + SF + + + +DLS N + +
Sbjct: 298 LFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACK 357
Query: 559 EAL-SLEYLNLSFNDFEGRLPTRGIFAN 585
A SL+ L LS N T I
Sbjct: 358 GAWPSLQTLVLSQNHLRSMQKTGEILLT 385
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 146 bits (372), Expect = 2e-39
Identities = 77/388 (19%), Positives = 147/388 (37%), Gaps = 61/388 (15%)
Query: 69 IGNLSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLTVLVL 128
+L+ L ++ + E L + L+++ + I + Y + L L L
Sbjct: 18 DADLAEGIRAVLQKASVTDVVTQE--ELESITKLVVAGEKV-ASIQG-IEYLTNLEYLNL 73
Query: 129 GNNKLVGSIPFEFVSLYKLKQLALPMNNLTGGIPPFLGNLTSLEVVSLAGNPFGGNIPDS 188
N++ P +L KL L + N +T L NLT+L + L +
Sbjct: 74 NGNQITDISPLS--NLVKLTNLYIGTNKIT--DISALQNLTNLRELYLNEDNISD--ISP 127
Query: 189 LGQLKELKTLGIGGNNLSGSIPPSIYNLSFLVIFSVSENQMHGSLPPSLGLYFPNLKLFQ 248
L L ++ +L +G N+ S + N++ L +V+E+++
Sbjct: 128 LANLTKMYSLNLGANHNL-SDLSPLSNMTGLNYLTVTESKV------------------- 167
Query: 249 TNENFFSGSIPISLSNASKLEYVEIASNSFFGKLSV--NFGGMKNLSYLILEYNNLGSGE 306
++N + L + + N ++ + +L Y N +
Sbjct: 168 --------KDVTPIANLTDLYSLSLNYN----QIEDISPLASLTSLHYFTAYVNQITD-- 213
Query: 307 SDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLSSQLQILVLGTNQLYGSIPSGIG 366
+ +AN ++L L +G N+ P +ANLS L L +GTNQ+ S + +
Sbjct: 214 ------ITPVANMTRLNSLKIGNNKITDLSP--LANLSQ-LTWLEIGTNQI--SDINAVK 262
Query: 367 NLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLGD 426
+L L L NQ + + L L L N E +G L++L +FL
Sbjct: 263 DLTKLKMLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQ 320
Query: 427 NNLSGVIPSSLGNLERLAILEMFANELS 454
N+++ + P L +L ++ + +
Sbjct: 321 NHITDIRP--LASLSKMDSADFANQVIK 346
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 146 bits (371), Expect = 3e-39
Identities = 89/405 (21%), Positives = 158/405 (39%), Gaps = 60/405 (14%)
Query: 99 LETLLLSDNSLVGKIPANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLT 158
TL + +I + + VL + + E L + +L + +
Sbjct: 2 AATLATLPAPI-NQIF-PDADLAEGIRAVLQKASVTDVVTQE--ELESITKLVVAGEKVA 57
Query: 159 GGIPPFLGNLTSLEVVSLAGNPFGGNIPDSLGQLKELKTLGIGGNNLSGSIPPSIYNLSF 218
+ LT+LE ++L GN P L L +L L IG N ++ ++ NL+
Sbjct: 58 S--IQGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKIT--DISALQNLTN 111
Query: 219 LVIFSVSENQMHGSLPPSLGLYFPNLKLFQTNENFFSGSIPISLSNASKLEYVEIASNSF 278
L ++E+ + S L+N +K+ + + +N
Sbjct: 112 LRELYLNEDNI---------------------------SDISPLANLTKMYSLNLGANHN 144
Query: 279 FGKLSVNFGGMKNLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGALPH 338
LS M L+YL + + + + +AN + L LSL NQ P
Sbjct: 145 LSDLS-PLSNMTGLNYLTVTESKVKD--------VTPIANLTDLYSLSLNYNQIEDISP- 194
Query: 339 SIANLSSQLQILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGL 398
+A+L+ L NQ+ P + N+ L SL+ N+ T P + L L L
Sbjct: 195 -LASLT-SLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWL 248
Query: 399 DFGGNHFSGEIPSTLGNLSSLYEIFLGDNNLSGVIPSSLGNLERLAILEMFANELSGTIP 458
+ G N S + + +L+ L + +G N +S + S L NL +L L + N+L
Sbjct: 249 EIGTNQISD--INAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDM 304
Query: 459 GDIFNISSLSVSLDLAENHFVGSIPPRIGNLKALRCFDVSNNDLS 503
I +++L+ L L++NH P + +L + D +N +
Sbjct: 305 EVIGGLTNLTT-LFLSQNHITDIRP--LASLSKMDSADFANQVIK 346
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 134 bits (339), Expect = 6e-35
Identities = 83/378 (21%), Positives = 152/378 (40%), Gaps = 61/378 (16%)
Query: 55 DLRSKALSGLLSPQIGNLSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIP 114
L+ +++ +++ L + ++ + + I L LE L L+ N + P
Sbjct: 28 VLQKASVTDVVT--QEELESITKLVVAGEKVA-SIQ-GIEYLTNLEYLNLNGNQITDISP 83
Query: 115 ANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTGGIPPFLGNLTSLEVV 174
LS +LT L +G NK+ + +L L++L L +N++ L NLT + +
Sbjct: 84 --LSNLVKLTNLYIGTNKI--TDISALQNLTNLRELYLNEDNISD--ISPLANLTKMYSL 137
Query: 175 SLAGNPFGGNIPDSLGQLKELKTLGIGGNNLSGSIPPSIYNLSFLVIFSVSENQMHGSLP 234
+L N ++ L + L L + + + P I NL+ L S++ NQ+
Sbjct: 138 NLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDI-- 192
Query: 235 PSLGLYFPNLKLFQTNENFFSGSIPISLSNASKLEYVEIASNSFFGKLS--VNFGGMKNL 292
L++ + L Y N +++ M L
Sbjct: 193 -------------------------SPLASLTSLHYFTAYVN----QITDITPVANMTRL 223
Query: 293 SYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLSSQLQILVL 352
+ L + N + ++ LAN S+L L +G NQ +++ +L ++L++L +
Sbjct: 224 NSLKIGNNKITD--------LSPLANLSQLTWLEIGTNQISD--INAVKDL-TKLKMLNV 272
Query: 353 GTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIPST 412
G+NQ+ S S + NL L SL NQ + +G L NL L NH + P
Sbjct: 273 GSNQI--SDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP-- 328
Query: 413 LGNLSSLYEIFLGDNNLS 430
L +LS + + +
Sbjct: 329 LASLSKMDSADFANQVIK 346
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 131 bits (333), Expect = 5e-34
Identities = 81/429 (18%), Positives = 154/429 (35%), Gaps = 88/429 (20%)
Query: 123 LTVLVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTGGIPPFLGNLTSLEVVSLAGNPFG 182
L + P L + + L ++T L S+ + +AG
Sbjct: 2 AATLATLPAPINQIFPDA--DLAEGIRAVLQKASVTD--VVTQEELESITKLVVAGEKVA 57
Query: 183 GNIPDSLGQLKELKTLGIGGNNLSGSIPPSIYNLSFLVIFSVSENQMHGSLPPSLGLYFP 242
+I + L L+ L + GN ++ P + NL L + N++
Sbjct: 58 -SIQG-IEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKI------------- 100
Query: 243 NLKLFQTNENFFSGSIPISLSNASKLEYVEIASNSFFGKLSV--NFGGMKNLSYLILEYN 300
+ +L N + L + + + +S + + L L N
Sbjct: 101 --------------TDISALQNLTNLRELYLNED----NISDISPLANLTKMYSLNLGAN 142
Query: 301 NLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLSSQLQILVLGTNQLYGS 360
+ S ++ L+N + L L++ ++ + P IANL+ L L L NQ+
Sbjct: 143 HNLS-------DLSPLSNMTGLNYLTVTESKVKDVTP--IANLT-DLYSLSLNYNQIEDI 192
Query: 361 IPSGIGNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLY 420
P + +L +L+ NQ T P + + L L G N + P L NLS L
Sbjct: 193 SP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLT 246
Query: 421 EIFLGDNNLSGVIPSSLGNLERLAILEMFANELSGTIPGDIFNISSLSVSLDLAENHFVG 480
+ +G N +S + +++ +L +L +L + +N++S
Sbjct: 247 WLEIGTNQISDI--NAVKDLTKLKMLNVGSNQIS-------------------------- 278
Query: 481 SIPPRIGNLKALRCFDVSNNDLSGEIPSELGLCSSLEEIYLAENFFNGFIPSFFRTSRGI 540
I + NL L ++NN L E +G ++L ++L++N P + +
Sbjct: 279 DISV-LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKM 335
Query: 541 RKVDLSRNN 549
D +
Sbjct: 336 DSADFANQV 344
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 117 bits (295), Expect = 5e-29
Identities = 62/312 (19%), Positives = 125/312 (40%), Gaps = 30/312 (9%)
Query: 260 ISLSNASKLEYVEIASNSFFGKLSVNFGGMKNLSYLILEYNNLGSGESDEMGFMNSLANC 319
++ ++ + S V +++++ L++ + S + +
Sbjct: 16 FPDADLAEGIRAVLQKASVTD--VVTQEELESITKLVVAGEKVAS--------IQGIEYL 65
Query: 320 SKLQVLSLGGNQFRGALPHSIANLSSQLQILVLGTNQLYGSIPSGIGNLVNLYSLQTEEN 379
+ L+ L+L GNQ P ++NL +L L +GTN++ + S + NL NL L E+
Sbjct: 66 TNLEYLNLNGNQITDISP--LSNLV-KLTNLYIGTNKI--TDISALQNLTNLRELYLNED 120
Query: 380 QFTGSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLGDNNLSGVIPSSLGN 439
+ P + L + L+ G NH S L N++ L + + ++ + V P + N
Sbjct: 121 NISDISP--LANLTKMYSLNLGANHNLS-DLSPLSNMTGLNYLTVTESKVKDVTP--IAN 175
Query: 440 LERLAILEMFANELSGTIPGDIFNISSLSVSLDLAENHFVGSIPPRIGNLKALRCFDVSN 499
L L L + N++ P + +++SL N P + N+ L + N
Sbjct: 176 LTDLYSLSLNYNQIEDISP--LASLTSLH-YFTAYVNQITDITP--VANMTRLNSLKIGN 230
Query: 500 NDLSGEIPSELGLCSSLEEIYLAENFFNGFIPSFFRTSRGIRKVDLSRNNFFGQIPIFLE 559
N ++ P L S L + + N + + + ++ +++ N I +
Sbjct: 231 NKITDLSP--LANLSQLTWLEIGTNQISD--INAVKDLTKLKMLNVGSNQI-SDISVLNN 285
Query: 560 ALSLEYLNLSFN 571
L L L+ N
Sbjct: 286 LSQLNSLFLNNN 297
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 62.6 bits (153), Expect = 1e-10
Identities = 32/179 (17%), Positives = 63/179 (35%), Gaps = 17/179 (9%)
Query: 395 LQGLDFGGNHFSGEIPSTLGNLSSLYEIFLGDNNLSGVIPSSLGNLERLAILEMFANELS 454
L + P +L+ L +++ V+ LE + L + +++
Sbjct: 2 AATLATLPAPINQIFP--DADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVA 57
Query: 455 GTIPGDIFNISSLS--VSLDLAENHFVGSIPPRIGNLKALRCFDVSNNDLSGEIPSELGL 512
I I L+ L+L N P + NL L + N ++ S L
Sbjct: 58 -----SIQGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKIT--DISALQN 108
Query: 513 CSSLEEIYLAENFFNGFIPSFFRTSRGIRKVDLSRNNFFGQIPIFLEALSLEYLNLSFN 571
++L E+YL E+ + P + ++L N+ + L YL ++ +
Sbjct: 109 LTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTES 165
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 137 bits (348), Expect = 2e-36
Identities = 63/361 (17%), Positives = 111/361 (30%), Gaps = 51/361 (14%)
Query: 159 GGIPPFLGNLTSLEVVSLAGNPFGGNIPDSLGQLKELKTLGIGGNNLSGSIPPSIYNLSF 218
G + + E + G+ D L Q + + + N +
Sbjct: 2 GSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQA----NSNN 57
Query: 219 LVIFSVSENQMHGSLPPSLG-LYFPNLKLFQTNENFFSGSIPISLSNASKLEYVEIASNS 277
I + + + + L P + P S L+++ I +
Sbjct: 58 PQIETRTGRALK-ATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAG 115
Query: 278 FFGKLSVNFGGMKNLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGALP 337
+L L L L N L + S+A+ ++L+ LS+ LP
Sbjct: 116 L-MELPDTMQQFAGLETLTLARNPLRA-------LPASIASLNRLRELSIRACPELTELP 167
Query: 338 HSIANLS--------SQLQILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSIPKEM 389
+A+ LQ L L + S+P+ I NL NL SL+ + + ++ +
Sbjct: 168 EPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAI 225
Query: 390 GKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLGDNNLSGVIPSSLGNLERLAILEMF 449
L L+ LD G P G + L + L D + +P + L +L
Sbjct: 226 HHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQL------ 279
Query: 450 ANELSGTIPGDIFNISSLSVSLDLAENHFVGSIPPRIGNLKALRCFDVSNNDLSGEIPSE 509
LDL + +P I L A V + L ++
Sbjct: 280 -------------------EKLDLRGCVNLSRLPSLIAQLPANCIILVPPH-LQAQLDQH 319
Query: 510 L 510
Sbjct: 320 R 320
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 137 bits (348), Expect = 3e-36
Identities = 65/375 (17%), Positives = 116/375 (30%), Gaps = 62/375 (16%)
Query: 69 IGNLSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLTVLVL 128
+ S + +T + +R + + N + +
Sbjct: 8 HHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQA-NSN---NPQIETR 63
Query: 129 GNNKLVGSIP-FEFVSLYKLKQLALPMNNLTGGIPPFLGNLTSLEVVSLAGNPFGGNIPD 187
L + E + L L L P L+ L+ +++ +PD
Sbjct: 64 TGRALKATADLLEDATQPGRVALELRSVPLPQ-FPDQAFRLSHLQHMTIDAAGLM-ELPD 121
Query: 188 SLGQLKELKTLGIGGNNLSGSIPPSIYNLSFLVIFSVSENQMHGSLPPSLGLYFPNLKLF 247
++ Q L+TL + N L ++P SI +L+ L S+ LP L
Sbjct: 122 TMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLAS-------- 172
Query: 248 QTNENFFSGSIPISLSNASKLEYVEIASNSFFGKLSVNFGGMKNLSYLILEYNNLGSGES 307
S G+ NL L LE+ + S
Sbjct: 173 --------------------------------TDASGEHQGLVNLQSLRLEWTGIRS--- 197
Query: 308 DEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLSSQLQILVLGTNQLYGSIPSGIGN 367
S+AN L+ L + + AL +I +L L+ L L + P G
Sbjct: 198 ----LPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPK-LEELDLRGCTALRNYPPIFGG 251
Query: 368 LVNLYSLQ-TEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLGD 426
L L + + ++P ++ +L L+ LD G +PS + L + I +
Sbjct: 252 RAPLKRLILKDCSNLL-TLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPP 310
Query: 427 N---NLSGVIPSSLG 438
+ L P +
Sbjct: 311 HLQAQLDQHRPVARP 325
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 131 bits (331), Expect = 6e-34
Identities = 56/365 (15%), Positives = 104/365 (28%), Gaps = 59/365 (16%)
Query: 92 EFGRLRRLETLLLSDNSLVGKIPANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLA 151
E L ++ + LS R + + +
Sbjct: 7 HHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHS----AWRQANSNNPQIET 62
Query: 152 LPMNNLTGGIPPFLGNLTS--LEVVSLAGNPFGGNIPDSLGQLKELKTLGIGGNNLSGSI 209
L L + T + L P PD +L L+ + I L +
Sbjct: 63 RTGRALKA-TADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-EL 119
Query: 210 PPSIYNLSFLVIFSVSENQMHGSLPPSLGLYFPNLKLFQTNENFFSGSIPISLSNASKLE 269
P ++ + L +++ N + +LP S+ + ++L
Sbjct: 120 PDTMQQFAGLETLTLARNPLR-ALPASIA-------------------------SLNRLR 153
Query: 270 YVEIASNSFFGKLSVNFGGMKNLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGG 329
+ I + +L LQ L L
Sbjct: 154 ELSIRACPELTELPEPLASTDAS---------------------GEHQGLVNLQSLRLEW 192
Query: 330 NQFRGALPHSIANLSSQLQILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSIPKEM 389
R +LP SIANL + L+ L + + L ++ I +L L L + P
Sbjct: 193 TGIR-SLPASIANLQN-LKSLKIRNSPL-SALGPAIHHLPKLEELDLRGCTALRNYPPIF 249
Query: 390 GKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLGDNNLSGVIPSSLGNLERLAILEMF 449
G L+ L +P + L+ L ++ L +PS + L I+ +
Sbjct: 250 GGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVP 309
Query: 450 ANELS 454
+ +
Sbjct: 310 PHLQA 314
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 126 bits (320), Expect = 2e-32
Identities = 50/303 (16%), Positives = 96/303 (31%), Gaps = 29/303 (9%)
Query: 257 SIPISLSNASKLEYVEIASNSFFGKLSVNFGGMKNLSYLILEYNNLGSGESDEMGFMNSL 316
LS + + + N L + + L
Sbjct: 27 PYHDVLSQWQRHYNADRNRWHSAWRQ----ANSNNPQIETRTGRALKA-------TADLL 75
Query: 317 ANCS--KLQVLSLGGNQFRGALPHSIANLSSQLQILVLGTNQLYGSIPSGIGNLVNLYSL 374
+ + L L P LS LQ + + L +P + L +L
Sbjct: 76 EDATQPGRVALELRSVPLP-QFPDQAFRLSH-LQHMTIDAAGL-MELPDTMQQFAGLETL 132
Query: 375 QTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLGN---------LSSLYEIFLG 425
N ++P + L L+ L E+P L + L +L + L
Sbjct: 133 TLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLE 191
Query: 426 DNNLSGVIPSSLGNLERLAILEMFANELSGTIPGDIFNISSLSVSLDLAENHFVGSIPPR 485
+ +P+S+ NL+ L L++ + LS + I ++ L LDL + + PP
Sbjct: 192 WTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKL-EELDLRGCTALRNYPPI 248
Query: 486 IGNLKALRCFDVSNNDLSGEIPSELGLCSSLEEIYLAENFFNGFIPSFFRTSRGIRKVDL 545
G L+ + + +P ++ + LE++ L +PS + +
Sbjct: 249 FGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILV 308
Query: 546 SRN 548
+
Sbjct: 309 PPH 311
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 117 bits (296), Expect = 3e-29
Identities = 55/305 (18%), Positives = 103/305 (33%), Gaps = 51/305 (16%)
Query: 65 LSPQIGNLSFLREINLMNNTIQGEIPLEFGRLRR--LETLLLSDNSLVGKIPANLSYCSR 122
+ + N + + ++ + L L L + P S
Sbjct: 48 SAWRQANSNNPQIETRTGRALK-ATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSH 105
Query: 123 LTVLVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTGGIPPFLGNLTSLEVVSLAGNPFG 182
L + + L+ +P L+ L L N L +P + +L L +S+ P
Sbjct: 106 LQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPEL 163
Query: 183 GNIPDSLGQ---------LKELKTLGIGGNNLSGSIPPSIYNLSFLVIFSVSENQMHGSL 233
+P+ L L L++L + + S+P SI NL L + + + +L
Sbjct: 164 TELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-AL 221
Query: 234 PPSLGLYFPNLKLFQTNENFFSGSIPISLSNASKLEYVEIASNSFFGKLSVNFGGMKNLS 293
P++ + KLE +++ + FGG L
Sbjct: 222 GPAIH-------------------------HLPKLEELDLRGCTALRNYPPIFGGRAPLK 256
Query: 294 YLIL-EYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLSSQLQILVL 352
LIL + +NL + + ++L+ L L G LP IA L + I+++
Sbjct: 257 RLILKDCSNLLT-------LPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPA-NCIILV 308
Query: 353 GTNQL 357
+
Sbjct: 309 PPHLQ 313
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 109 bits (275), Expect = 2e-26
Identities = 46/240 (19%), Positives = 94/240 (39%), Gaps = 22/240 (9%)
Query: 65 LSPQIGNLSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLT 124
Q LS L+ + + + E+P + LETL L+ N L +PA+++ +RL
Sbjct: 96 FPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLR 153
Query: 125 VLVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTGGIPPFLGNLTSLEVVSLAGNPFGGN 184
L + + +P S L +L+ + L +
Sbjct: 154 ELSIRACPELTELPEPLASTD---------------ASGEHQGLVNLQSLRLEWTGI-RS 197
Query: 185 IPDSLGQLKELKTLGIGGNNLSGSIPPSIYNLSFLVIFSVSENQMHGSLPPSLGLYFPNL 244
+P S+ L+ LK+L I + LS ++ P+I++L L + + PP G L
Sbjct: 198 LPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFG-GRAPL 255
Query: 245 K-LFQTNENFFSGSIPISLSNASKLEYVEIASNSFFGKLSVNFGGMKNLSYLILEYNNLG 303
K L + + ++P+ + ++LE +++ +L + +++ +
Sbjct: 256 KRLILKDCSNLL-TLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 83.1 bits (206), Expect = 1e-17
Identities = 31/152 (20%), Positives = 59/152 (38%), Gaps = 5/152 (3%)
Query: 65 LSPQIGNLSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLT 124
S + L L+ + L I+ +P L+ L++L + ++ L + + + +L
Sbjct: 175 ASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLE 232
Query: 125 VLVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTGGIPPFLGNLTSLEVVSLAGNPFGGN 184
L L + + P F LK+L L + +P + LT LE + L G
Sbjct: 233 ELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSR 292
Query: 185 IPDSLGQLKELKTLGIGGN---NLSGSIPPSI 213
+P + QL + + + L P +
Sbjct: 293 LPSLIAQLPANCIILVPPHLQAQLDQHRPVAR 324
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 65.7 bits (161), Expect = 9e-12
Identities = 23/107 (21%), Positives = 40/107 (37%)
Query: 65 LSPQIGNLSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLT 124
L P I +L L E++L T P FG L+ L+L D S + +P ++ ++L
Sbjct: 221 LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLE 280
Query: 125 VLVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTGGIPPFLGNLTSL 171
L L + +P L + +P + +
Sbjct: 281 KLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQHRPVARPAE 327
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 123 bits (310), Expect = 1e-30
Identities = 68/380 (17%), Positives = 136/380 (35%), Gaps = 31/380 (8%)
Query: 71 NLSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPAN-LSYCSRLTVLVLG 129
++++ T E L + + ++++ K+PA L ++ +L L
Sbjct: 19 YDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLN 77
Query: 130 NNKLVGSIPFEFVSLYKLKQLALPMNNLTGGIPPFLGNLTSLEVVSLAGNPFGGNIPDSL 189
+ ++ + F + +++L + N + P N+ L V+ L N
Sbjct: 78 DLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIF 137
Query: 190 GQLKELKTLGIGGNNLSGSIPPSI-YNLSFLVIFSVSENQMHGSLPPSLGLYFPNLKLFQ 248
+L TL + NNL I + L +S N++ + SL P+L
Sbjct: 138 HNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLT-HVDLSL---IPSLFHAN 192
Query: 249 TNENFFSGSIPISLSNASKLEYVEIASNSFFGKLSVNFGGMKNLSYLILEYNNLGSGESD 308
+ N S +L+ +E ++ + NS V L+ L L++NNL
Sbjct: 193 VSYNLLS-----TLAIPIAVEELDASHNSI---NVVRGPVNVELTILKLQHNNLTD---- 240
Query: 309 EMGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLSSQLQILVLGTNQLYGSIPSGIGNL 368
L N L + L N+ + H + +L+ L + N+L ++ +
Sbjct: 241 ----TAWLLNYPGLVEVDLSYNELEKIMYHPFVKM-QRLERLYISNNRL-VALNLYGQPI 294
Query: 369 VNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLGDNN 428
L L N + + + L+ L N + L +L + L N+
Sbjct: 295 PTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLK--LSTHHTLKNLTLSHND 350
Query: 429 LSGV-IPSSLGNLERLAILE 447
+ + N+ R A+ +
Sbjct: 351 WDCNSLRALFRNVARPAVDD 370
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 113 bits (284), Expect = 3e-27
Identities = 72/417 (17%), Positives = 135/417 (32%), Gaps = 79/417 (18%)
Query: 113 IPANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTGGIPP-FLGNLTSL 171
I +NL Y + + FE ++L K + + + +P L + +
Sbjct: 13 IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRK-LPAALLDSFRQV 71
Query: 172 EVVSLAGNPFGGNIPDSLGQLKELKTLGIGGNNLSGSIPPSI-YNLSFLVIFSVSENQMH 230
E+++L + ++ L +G N + +PP + N+ L + + N +
Sbjct: 72 ELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLS 130
Query: 231 GSLPPSLGLYFPNLKLFQTNENFFSGSIPISLSNASKLEYVEIASNSFFGKLSVNFGGMK 290
SLP + F
Sbjct: 131 -SLPRGI------------------------------------------------FHNTP 141
Query: 291 NLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLSSQLQIL 350
L+ L + NNL E D + + LQ L L N+ I +L
Sbjct: 142 KLTTLSMSNNNLERIEDD------TFQATTSLQNLQLSSNRLTHVDLSLIPSL----FHA 191
Query: 351 VLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIP 410
+ N L S + + + L N + + + L L N+ +
Sbjct: 192 NVSYNLL-----STLAIPIAVEELDASHNSIN-VVRGPV--NVELTILKLQHNNLTD--T 241
Query: 411 STLGNLSSLYEIFLGDNNLSGVIPSSLGNLERLAILEMFANELSGTIPGDIFNISSLSVS 470
+ L N L E+ L N L ++ ++RL L + N L + I +L V
Sbjct: 242 AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKV- 299
Query: 471 LDLAENHFVGSIPPRIGNLKALRCFDVSNNDLSGEIPSELGLCSSLEEIYLAENFFN 527
LDL+ NH + + L + +N + + L +L+ + L+ N ++
Sbjct: 300 LDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLK--LSTHHTLKNLTLSHNDWD 352
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 107 bits (270), Expect = 2e-25
Identities = 60/393 (15%), Positives = 127/393 (32%), Gaps = 57/393 (14%)
Query: 89 IPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLK 148
I + + + + ++ N+ + S +++
Sbjct: 13 IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVE 72
Query: 149 QLALPMNNLTGGIPPF-LGNLTSLEVVSLAGNPFGGNIPDSLGQLKELKTLGIGGNNLSG 207
L L + I + +++ + + N P + L L + N+LS
Sbjct: 73 LLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS- 130
Query: 208 SIPPSI-YNLSFLVIFSVSENQMHGSLPPSLGLYFPNLKLFQTNENFFSGSIPISLSNAS 266
S+P I +N L S+S N + + +
Sbjct: 131 SLPRGIFHNTPKLTTLSMSNNNLE-RIEDDT------------------------FQATT 165
Query: 267 KLEYVEIASNSFFGKLSVNFGGMKNLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLS 326
L+ ++++SN V+ + +L + + YN L ++LA ++ L
Sbjct: 166 SLQNLQLSSNRL---THVDLSLIPSLFHANVSYNLL-----------STLAIPIAVEELD 211
Query: 327 LGGNQFRGALPHSIANLSSQLQILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSIP 386
N + ++ +L IL L N L + + + N L + N+ I
Sbjct: 212 ASHNSIN-VVR---GPVNVELTILKLQHNNL--TDTAWLLNYPGLVEVDLSYNELE-KIM 264
Query: 387 KEM-GKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLGDNNLSGVIPSSLGNLERLAI 445
K+ L+ L N + + +L + L N+L + + +RL
Sbjct: 265 YHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLEN 322
Query: 446 LEMFANELSGTIPGDIFNISSLSVSLDLAENHF 478
L + N + T+ +L +L L+ N +
Sbjct: 323 LYLDHNSIV-TLKLSTH--HTLK-NLTLSHNDW 351
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 106 bits (266), Expect = 6e-25
Identities = 83/427 (19%), Positives = 151/427 (35%), Gaps = 55/427 (12%)
Query: 185 IPDSLGQLKELKTLGIGGNNLSGSIPPSIYNLSFLVIFSVSENQMHGSLPPSLGLYFPNL 244
I +L + I L+ I + + M LP +L F +
Sbjct: 13 IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQV 71
Query: 245 KLFQTNENFFSGSIPISLSNASKLEYVEIASNSFFGKLSVN-FGGMKNLSYLILEYNNLG 303
+L N+ + + A ++ + + N+ L + F + L+ L+LE N+L
Sbjct: 72 ELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAI-RYLPPHVFQNVPLLTVLVLERNDLS 130
Query: 304 SGESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLSSQLQILVLGTNQLYGSIPS 363
S N KL LS+ N + +S LQ L L +N+L +
Sbjct: 131 SLPR------GIFHNTPKLTTLSMSNNNLERIEDDTFQATTS-LQNLQLSSNRL-THVD- 181
Query: 364 GIGNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIF 423
+ + +L+ N + + + ++ LD N + + L +
Sbjct: 182 -LSLIPSLFHANVSYNLLS-----TLAIPIAVEELDASHNSIN-VVRG--PVNVELTILK 232
Query: 424 LGDNNLSGVIPSSLGNLERLAILEMFANELSGTIPGDIF-NISSLSVSLDLAENHFVGSI 482
L NNL+ + L N L +++ NEL I F + L L ++ N V ++
Sbjct: 233 LQHNNLTDT--AWLLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLE-RLYISNNRLV-AL 287
Query: 483 PPRIGNLKALRCFDVSNNDLSGEIPSELGLCSSLEEIYLAENFFNGFIPSFFRTSRGIRK 542
+ L+ D+S+N L + LE +YL N
Sbjct: 288 NLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSI---------------- 330
Query: 543 VDLSRNNFFGQIPIFLEALSLEYLNLSFNDFEGRLPTRGIFANASAISVGGCNRLCGGIH 602
V L + +L+ L LS ND++ R +F N + +V ++ C +
Sbjct: 331 VTLKLSTHH----------TLKNLTLSHNDWDC-NSLRALFRNVARPAVDDADQHCKIDY 379
Query: 603 ELQLPKC 609
+L+ C
Sbjct: 380 QLEHGLC 386
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 99.0 bits (247), Expect = 2e-22
Identities = 61/338 (18%), Positives = 118/338 (34%), Gaps = 38/338 (11%)
Query: 257 SIPISLSNASKLEYVEIASNSFFGKLSVNFGGMKNLSYLILEYNNLGSGESDEMGFMNSL 316
I +L V I + + N + + + + + L
Sbjct: 12 CIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPA------ALL 65
Query: 317 ANCSKLQVLSLGGNQFRGALPHSIANLSSQLQILVLGTNQLYGSIPSGI-GNLVNLYSLQ 375
+ ++++L+L Q ++ A + +Q L +G N + +P + N+ L L
Sbjct: 66 DSFRQVELLNLNDLQIEEIDTYAFAYAHT-IQKLYMGFNAIR-YLPPHVFQNVPLLTVLV 123
Query: 376 TEENQFTGSIPKEM-GKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLGDNNLSGVIP 434
E N + S+P+ + L L N+ T +SL + L N L+ V
Sbjct: 124 LERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDL 182
Query: 435 SSLGNLERLAI----------------LEMFANELSGTIPGDIFNISSLSVSLDLAENHF 478
S + +L + L+ N ++ + G + L+ L L N+
Sbjct: 183 SLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSIN-VVRGPVN--VELT-ILKLQHNNL 238
Query: 479 VGSIPPRIGNLKALRCFDVSNNDLSGEIPSE-LGLCSSLEEIYLAENFFNGFIPSFFRTS 537
+ + N L D+S N+L +I LE +Y++ N + + +
Sbjct: 239 --TDTAWLLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPI 294
Query: 538 RGIRKVDLSRNNFFGQIPIFLEAL-SLEYLNLSFNDFE 574
++ +DLS N+ + LE L L N
Sbjct: 295 PTLKVLDLSHNH-LLHVERNQPQFDRLENLYLDHNSIV 331
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 78.2 bits (193), Expect = 1e-15
Identities = 43/221 (19%), Positives = 78/221 (35%), Gaps = 14/221 (6%)
Query: 354 TNQLYGSIPSGIGNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIPSTL 413
Y I S + Y + + E L N + + F + + L
Sbjct: 6 RQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALL 65
Query: 414 GNLSSLYEIFLGDNNLSGVIPSSLGNLERLAILEMFANELSGTIPGDIF-NISSLSVSLD 472
+ + + L D + + + + L M N + +P +F N+ L+V L
Sbjct: 66 DSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTV-LV 123
Query: 473 LAENHFVGSIPPRI-GNLKALRCFDVSNNDLSGEIPSE-LGLCSSLEEIYLAENFFNGFI 530
L N S+P I N L +SNN+L I + +SL+ + L+ N
Sbjct: 124 LERNDLS-SLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLTHVD 181
Query: 531 PSFFRTSRGIRKVDLSRNNFFGQIPIFLEALSLEYLNLSFN 571
S + ++S N + +++E L+ S N
Sbjct: 182 LSLI---PSLFHANVSYN----LLSTLAIPIAVEELDASHN 215
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 73.5 bits (181), Expect = 3e-14
Identities = 39/198 (19%), Positives = 78/198 (39%), Gaps = 15/198 (7%)
Query: 56 LRSKALSGLLSPQIGNLSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPA 115
L +S L + + E++ +N+I + L L L N+L
Sbjct: 188 LFHANVSYNLLSTLAIPIAVEELDASHNSINV---VRGPVNVELTILKLQHNNLT-DTAW 243
Query: 116 NLSYCSRLTVLVLGNNKLVGSIPFE-FVSLYKLKQLALPMNNLTGGIPPFLGNLTSLEVV 174
L L + L N+L I + FV + +L++L + N L + + + +L+V+
Sbjct: 244 -LLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVL 300
Query: 175 SLAGNPFGGNIPDSLGQLKELKTLGIGGNNLSGSIPPSIYNLSFLVIFSVSENQMHGSLP 234
L+ N ++ + Q L+ L + N++ ++ S L ++S N +
Sbjct: 301 DLSHNHL-LHVERNQPQFDRLENLYLDHNSIV-TLKLS--THHTLKNLTLSHNDWDCN-- 354
Query: 235 PSLGLYFPNLKLFQTNEN 252
SL F N+ ++
Sbjct: 355 -SLRALFRNVARPAVDDA 371
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 62.4 bits (152), Expect = 2e-10
Identities = 30/145 (20%), Positives = 60/145 (41%), Gaps = 9/145 (6%)
Query: 67 PQIGNLSFLREINLMNNTIQGEIPLE-FGRLRRLETLLLSDNSLVGKIPANLSYCSRLTV 125
+ N L E++L N ++ +I F +++RLE L +S+N LV + L V
Sbjct: 242 AWLLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKV 299
Query: 126 LVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTGGIPPFLGNLTSLEVVSLAGNPFGGNI 185
L L +N L+ + +L+ L L N++ + +L+ ++L+ N + N
Sbjct: 300 LDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLKL--STHHTLKNLTLSHNDWDCN- 354
Query: 186 PDSLGQLKELKTLGIGGNNLSGSIP 210
+ + + + I
Sbjct: 355 -SLRALFRNVARPAVDDADQHCKID 378
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 124 bits (312), Expect = 2e-30
Identities = 63/441 (14%), Positives = 136/441 (30%), Gaps = 23/441 (5%)
Query: 136 SIPFEFVSLYKLKQLALPMNNLTGGIPPFLGNLTSLEVVSLAGNPFGGNIPDSLGQLKEL 195
+I + + K + ++L + + +++ + L+GNP L +L
Sbjct: 1 AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60
Query: 196 KTLGIGGNNLSGSIPPSIYNLSFLVIFSVSENQMHGSLPPSLGLYFPNLKLFQTNENFFS 255
+ L + N L + +LS L ++ N + L P+++ N S
Sbjct: 61 ELLNLSSNVLYE--TLDLESLSTLRTLDLNNNYVQ-ELLVG-----PSIETLHAANNNIS 112
Query: 256 GSIPISLSNASKLEYVEIASNSFFGKLSVNFGGMKNLSYLILEYNNLGSGESDEMGFMNS 315
+S S + + +A+N ++ G + YL L+ N + + E+
Sbjct: 113 R---VSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAEL----- 164
Query: 316 LANCSKLQVLSLGGNQFRGALPHSIANLSSQLQILVLGTNQLYGSIPSGIGNLVNLYSLQ 375
A+ L+ L+L N + + + ++L+ L L +N+L + + + +
Sbjct: 165 AASSDTLEHLNLQYNFIY-DVKGQV--VFAKLKTLDLSSNKL-AFMGPEFQSAAGVTWIS 220
Query: 376 TEENQFTGSIPKEMGKLLNLQGLDFGGNHFS-GEIPSTLGNLSSLYEIFLGDN-NLSGVI 433
N+ I K + NL+ D GN F G + + + L+G
Sbjct: 221 LRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQN 279
Query: 434 PSSLGNLERLAILEMFANELSGTIPGDIFNISSLSVSLDLAENHFVGSIPPRIGNLKALR 493
+L + + +L + + N R
Sbjct: 280 EEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQR 339
Query: 494 CFDVSNNDLSGEIPSELGLCSSLEEIYLAENFFNGFIPSFFRTSRGIRKVDLSRNNFFGQ 553
D I + + + + + + R +
Sbjct: 340 EIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIEL 399
Query: 554 IPIFLEALSLEYLNLSFNDFE 574
E L+ L +E
Sbjct: 400 QHATEEQSPLQLLRAIVKRYE 420
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 121 bits (306), Expect = 1e-29
Identities = 61/474 (12%), Positives = 140/474 (29%), Gaps = 30/474 (6%)
Query: 55 DLRSKALSGLLSPQIGNLSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIP 114
+ +L L+ + ++E++L N + + +LE L LS N L
Sbjct: 16 KVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYE--T 73
Query: 115 ANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTGGIPPFLGNLTSLEVV 174
+L S L L L NN + E + ++ L NN++ + + +
Sbjct: 74 LDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNIS-RVSC--SRGQGKKNI 125
Query: 175 SLAGNPFGGNIPDSLGQLKELKTLGIGGNNLSG-SIPPSIYNLSFLVIFSVSENQMHGSL 233
LA N G ++ L + N + + + L ++ N ++ +
Sbjct: 126 YLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DV 184
Query: 234 PPSLGLYFPNLKLFQTNENFFSGSIPISLSNASKLEYVEIASNSFFGKLSVNFGGMKNLS 293
+ LK + N + + +A+ + ++ + +N + +NL
Sbjct: 185 KGQVVF--AKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNK-LVLIEKALRFSQNLE 240
Query: 294 YLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLSSQLQILVLG 353
+ L N G + + ++Q ++ + L + + G
Sbjct: 241 HFDLRGNGFHCGTL-----RDFFSKNQRVQTVAKQTVKK---LTGQNEEECTVPTLGHYG 292
Query: 354 TNQLYGSIPSGIGNLVNLYSLQTEENQFTGS----IPKEMGKLLNLQGLDFGGNHFSGEI 409
L+ L + GS + E + +D + I
Sbjct: 293 AYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTVI 352
Query: 410 PSTLGNLSSLYEIFLGDNNLSGVIPSSLGNLERLAILEMFANELSGTIPGDIFNISSLSV 469
+ + L + + L A + S L +
Sbjct: 353 DQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQ-IELQHATEEQSPLQL 411
Query: 470 SLDLAENHFVGSIPPRIGNLKALRCFDVSNNDLSGEIPSELGLCSSLEEIYLAE 523
+ + + + + A+R +D+ + + ++ E L
Sbjct: 412 LRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKET-QLAEENARLKKLNGEADLA 464
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 120 bits (303), Expect = 3e-29
Identities = 63/442 (14%), Positives = 122/442 (27%), Gaps = 55/442 (12%)
Query: 89 IPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLK 148
I R + ++D+SL + + + L L N L + KL+
Sbjct: 2 IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61
Query: 149 QLALPMNNLTGGIPPFLGNLTSLEVVSLAGNPFGGNIPDSLGQLKELKTLGIGGNNLSGS 208
L L N L +L++L + L N L ++TL NN+S
Sbjct: 62 LLNLSSNVLY-ETLDL-ESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNIS-R 113
Query: 209 IPPSIYNLSFLVIFSVSENQMHGSLPPSLGLYFPNLKLFQTNENFFSGSIPISLSNASKL 268
+ S K N + + S++
Sbjct: 114 VSCSR---------------------------GQGKKNIYLANNKITMLRDLDEGCRSRV 146
Query: 269 EYVEIASNSFFG-KLSVNFGGMKNLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSL 327
+Y+++ N + L +L L+YN + + +KL+ L L
Sbjct: 147 QYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD--------VKGQVVFAKLKTLDL 198
Query: 328 GGNQFRGALPHSIANLSSQLQILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQF-TGSIP 386
N+ + + + + + L N+L I + NL N F G++
Sbjct: 199 SSNKLA-FMGPEFQSAAG-VTWISLRNNKL-VLIEKALRFSQNLEHFDLRGNGFHCGTLR 255
Query: 387 KEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLGDNNLSGVIPSSLGNLERLAIL 446
K +Q + + G + L L
Sbjct: 256 DFFSKNQRVQTVA--KQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRK 313
Query: 447 EMFANELSG----TIPGDIFNISSLSVSLDLAENHFVGSIPPRIGNLKALRCFDVSNNDL 502
E G + + N + +D + + I +A + L
Sbjct: 314 EHALLSGQGSETERLECERENQARQR-EIDALKEQYRTVIDQVTLRKQAKITLEQKKKAL 372
Query: 503 SGEIPSELGLCSSLEEIYLAEN 524
++ + + L+
Sbjct: 373 DEQVSNGRRAHAELDGTLQQAV 394
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 123 bits (311), Expect = 7e-30
Identities = 68/380 (17%), Positives = 136/380 (35%), Gaps = 31/380 (8%)
Query: 71 NLSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPAN-LSYCSRLTVLVLG 129
++++ T E L + + ++++ K+PA L ++ +L L
Sbjct: 25 YDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLN 83
Query: 130 NNKLVGSIPFEFVSLYKLKQLALPMNNLTGGIPPFLGNLTSLEVVSLAGNPFGGNIPDSL 189
+ ++ + F + +++L + N + P N+ L V+ L N
Sbjct: 84 DLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIF 143
Query: 190 GQLKELKTLGIGGNNLSGSIPPSI-YNLSFLVIFSVSENQMHGSLPPSLGLYFPNLKLFQ 248
+L TL + NNL I + L +S N++ + SL P+L
Sbjct: 144 HNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLT-HVDLSL---IPSLFHAN 198
Query: 249 TNENFFSGSIPISLSNASKLEYVEIASNSFFGKLSVNFGGMKNLSYLILEYNNLGSGESD 308
+ N S +L+ +E ++ + NS V L+ L L++NNL
Sbjct: 199 VSYNLLS-----TLAIPIAVEELDASHNSI---NVVRGPVNVELTILKLQHNNLTD---- 246
Query: 309 EMGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLSSQLQILVLGTNQLYGSIPSGIGNL 368
L N L + L N+ + H + +L+ L + N+L ++ +
Sbjct: 247 ----TAWLLNYPGLVEVDLSYNELEKIMYHPFVKM-QRLERLYISNNRL-VALNLYGQPI 300
Query: 369 VNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLGDNN 428
L L N + + + L+ L N + L +L + L N+
Sbjct: 301 PTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLK--LSTHHTLKNLTLSHND 356
Query: 429 LSGV-IPSSLGNLERLAILE 447
+ + N+ R A+ +
Sbjct: 357 WDCNSLRALFRNVARPAVDD 376
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 112 bits (281), Expect = 4e-26
Identities = 71/417 (17%), Positives = 135/417 (32%), Gaps = 79/417 (18%)
Query: 113 IPANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTGGIPP-FLGNLTSL 171
I +NL Y + + FE ++L K + + + +P L + +
Sbjct: 19 IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRK-LPAALLDSFRQV 77
Query: 172 EVVSLAGNPFGGNIPDSLGQLKELKTLGIGGNNLSGSIPPSI-YNLSFLVIFSVSENQMH 230
E+++L + ++ L +G N + +PP + N+ L + + N +
Sbjct: 78 ELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLS 136
Query: 231 GSLPPSLGLYFPNLKLFQTNENFFSGSIPISLSNASKLEYVEIASNSFFGKLSVNFGGMK 290
SLP + F
Sbjct: 137 -SLPRGI------------------------------------------------FHNTP 147
Query: 291 NLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLSSQLQIL 350
L+ L + NNL E ++ + LQ L L N+ I +L
Sbjct: 148 KLTTLSMSNNNLERIED------DTFQATTSLQNLQLSSNRLTHVDLSLIPSL----FHA 197
Query: 351 VLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIP 410
+ N L S + + + L N + + + L L N+ +
Sbjct: 198 NVSYNLL-----STLAIPIAVEELDASHNSIN-VVRGPV--NVELTILKLQHNNLTD--T 247
Query: 411 STLGNLSSLYEIFLGDNNLSGVIPSSLGNLERLAILEMFANELSGTIPGDIFNISSLSVS 470
+ L N L E+ L N L ++ ++RL L + N L + I +L V
Sbjct: 248 AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKV- 305
Query: 471 LDLAENHFVGSIPPRIGNLKALRCFDVSNNDLSGEIPSELGLCSSLEEIYLAENFFN 527
LDL+ NH + + L + +N + + L +L+ + L+ N ++
Sbjct: 306 LDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLK--LSTHHTLKNLTLSHNDWD 358
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 105 bits (263), Expect = 7e-24
Identities = 65/388 (16%), Positives = 125/388 (32%), Gaps = 58/388 (14%)
Query: 55 DLRSKALSGLLSPQIGNLSFLREINLMNNTIQGEIPLE-FGRLRRLETLLLSDNSLVGKI 113
++ + L + + + + +NL + I+ EI F ++ L + N++ +
Sbjct: 57 TFKNSTMRKLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIR-YL 114
Query: 114 PAN-LSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTGGIPP-FLGNLTSL 171
P + LTVLVL N L F + KL L++ NNL I TSL
Sbjct: 115 PPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSL 173
Query: 172 EVVSLAGNPFGGNIPDSLGQLKELKTLGIGGNNLSGSIPPSIYNLSFLVIFSVSENQMHG 231
+ + L+ N ++ L + L + N LS ++ + S N ++
Sbjct: 174 QNLQLSSNRL-THVD--LSLIPSLFHANVSYNLLS-----TLAIPIAVEELDASHNSIN- 224
Query: 232 SLPPSLGLYFPNLKLFQTNENFFSGSIPISLSNASKLEYVEIASNSFFGKLSVNFGGMKN 291
+ + L + + N +
Sbjct: 225 VVRGPV---NVELTILKLQHNNLT-DTA-------------------------WLLNYPG 255
Query: 292 LSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLSSQLQILV 351
L + L YN L + +L+ L + N+ AL + + L++L
Sbjct: 256 LVEVDLSYNELEKIMY------HPFVKMQRLERLYISNNRLV-ALNLYGQPIPT-LKVLD 307
Query: 352 LGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIPS 411
L N L + L +L + N ++ + L+ L N +
Sbjct: 308 LSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLK--LSTHHTLKNLTLSHNDWDCNSLR 363
Query: 412 TLGNLSSLYEIFLGDNNLSGVIPSSLGN 439
L ++ + D + I L +
Sbjct: 364 AL--FRNVARPAVDDADQHCKIDYQLEH 389
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 102 bits (256), Expect = 4e-23
Identities = 83/427 (19%), Positives = 151/427 (35%), Gaps = 55/427 (12%)
Query: 185 IPDSLGQLKELKTLGIGGNNLSGSIPPSIYNLSFLVIFSVSENQMHGSLPPSLGLYFPNL 244
I +L + I L+ I + + M LP +L F +
Sbjct: 19 IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQV 77
Query: 245 KLFQTNENFFSGSIPISLSNASKLEYVEIASNSFFGKLSVN-FGGMKNLSYLILEYNNLG 303
+L N+ + + A ++ + + N+ L + F + L+ L+LE N+L
Sbjct: 78 ELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAI-RYLPPHVFQNVPLLTVLVLERNDLS 136
Query: 304 SGESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLSSQLQILVLGTNQLYGSIPS 363
S N KL LS+ N + +S LQ L L +N+L +
Sbjct: 137 SLPR------GIFHNTPKLTTLSMSNNNLERIEDDTFQATTS-LQNLQLSSNRL-THVD- 187
Query: 364 GIGNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIF 423
+ + +L+ N + + + ++ LD N + + L +
Sbjct: 188 -LSLIPSLFHANVSYNLLS-----TLAIPIAVEELDASHNSIN-VVRG--PVNVELTILK 238
Query: 424 LGDNNLSGVIPSSLGNLERLAILEMFANELSGTIPGDIF-NISSLSVSLDLAENHFVGSI 482
L NNL+ + L N L +++ NEL I F + L L ++ N V ++
Sbjct: 239 LQHNNLTDT--AWLLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLER-LYISNNRLV-AL 293
Query: 483 PPRIGNLKALRCFDVSNNDLSGEIPSELGLCSSLEEIYLAENFFNGFIPSFFRTSRGIRK 542
+ L+ D+S+N L + LE +YL N
Sbjct: 294 NLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSI---------------- 336
Query: 543 VDLSRNNFFGQIPIFLEALSLEYLNLSFNDFEGRLPTRGIFANASAISVGGCNRLCGGIH 602
V L + +L+ L LS ND++ R +F N + +V ++ C +
Sbjct: 337 VTLKLSTHH----------TLKNLTLSHNDWDC-NSLRALFRNVARPAVDDADQHCKIDY 385
Query: 603 ELQLPKC 609
+L+ C
Sbjct: 386 QLEHGLC 392
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 96.5 bits (240), Expect = 4e-21
Identities = 61/334 (18%), Positives = 118/334 (35%), Gaps = 36/334 (10%)
Query: 257 SIPISLSNASKLEYVEIASNSFFGKLSVNFGGMKNLSYLILEYNNLGSGESDEMGFMNSL 316
I +L V I + + N + + + + + L
Sbjct: 18 CIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPA------ALL 71
Query: 317 ANCSKLQVLSLGGNQFRGALPHSIANLSSQLQILVLGTNQLYGSIPSGI-GNLVNLYSLQ 375
+ ++++L+L Q ++ A + +Q L +G N + +P + N+ L L
Sbjct: 72 DSFRQVELLNLNDLQIEEIDTYAFAYAHT-IQKLYMGFNAIR-YLPPHVFQNVPLLTVLV 129
Query: 376 TEENQFTGSIPKEM-GKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLGDNNLSGVIP 434
E N + S+P+ + L L N+ T +SL + L N L+ V
Sbjct: 130 LERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDL 188
Query: 435 SSLGNLERLAI----------------LEMFANELSGTIPGDIFNISSLSVSLDLAENHF 478
S + +L + L+ N ++ + G + L+ L L N+
Sbjct: 189 SLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSIN-VVRGPVN--VELT-ILKLQHNNL 244
Query: 479 VGSIPPRIGNLKALRCFDVSNNDLSGEIPSE-LGLCSSLEEIYLAENFFNGFIPSFFRTS 537
+ + N L D+S N+L +I LE +Y++ N + + +
Sbjct: 245 --TDTAWLLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPI 300
Query: 538 RGIRKVDLSRNNFFGQIPIFLEALSLEYLNLSFN 571
++ +DLS N+ + LE L L N
Sbjct: 301 PTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHN 334
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 77.3 bits (190), Expect = 5e-15
Identities = 45/232 (19%), Positives = 82/232 (35%), Gaps = 14/232 (6%)
Query: 343 LSSQLQILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGG 402
+ Q + V Y I S + Y + + E L N + + F
Sbjct: 1 VGGQQRYNVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKN 60
Query: 403 NHFSGEIPSTLGNLSSLYEIFLGDNNLSGVIPSSLGNLERLAILEMFANELSGTIPGDIF 462
+ + L + + + L D + + + + L M N + +P +F
Sbjct: 61 STMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVF 119
Query: 463 -NISSLSVSLDLAENHFVGSIPPRI-GNLKALRCFDVSNNDLSGEIPSE-LGLCSSLEEI 519
N+ L+V L L N S+P I N L +SNN+L I + +SL+ +
Sbjct: 120 QNVPLLTV-LVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNL 176
Query: 520 YLAENFFNGFIPSFFRTSRGIRKVDLSRNNFFGQIPIFLEALSLEYLNLSFN 571
L+ N S + ++S N + +++E L+ S N
Sbjct: 177 QLSSNRLTHVDLSLI---PSLFHANVSYN----LLSTLAIPIAVEELDASHN 221
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 118 bits (298), Expect = 2e-28
Identities = 82/466 (17%), Positives = 168/466 (36%), Gaps = 22/466 (4%)
Query: 99 LETLLLSDNSLVGKIPANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLT 158
L +S N + +++ S+L +L++ +N++ F +L+ L L N L
Sbjct: 23 TTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV 82
Query: 159 GGIPPFLGNLTSLEVVSLAGNPFGGNIPDS--LGQLKELKTLGIGGNNLSGSIPPSIYNL 216
I +L+ + L+ N F +P G + +LK LG+ +L S I +L
Sbjct: 83 -KIS--CHPTVNLKHLDLSFNAF-DALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHL 138
Query: 217 SFLVIFSVSENQMHGSLPPSL--GLYFPNLKLFQTNENFFSGSIPISLSNASKLEYVEIA 274
+ + V P +L + F + +S+ + LE I
Sbjct: 139 NISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIK 198
Query: 275 SNSFFGK----LSVNFGGMKNLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGN 330
K LS+ N L NN+ + + + + + + + + S+
Sbjct: 199 CVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTT-VWYFSISNV 257
Query: 331 QFRGALPHSIANLSS----QLQILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSIP 386
+ +G L + S L I + ++ N+ +
Sbjct: 258 KLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHM 317
Query: 387 KEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLGDNNLSGV--IPSSLGNLERLA 444
K+ LDF N + + G+L+ L + L N L + I ++ L
Sbjct: 318 LCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQ 377
Query: 445 ILEMFANELSGTIPGDIFNISSLSVSLDLAENHFVGSIPPRIGNLKALRCFDVSNNDLSG 504
L++ N +S + + +SL+++ N +I + ++ D+ +N +
Sbjct: 378 QLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL--PPRIKVLDLHSNKIK- 434
Query: 505 EIPSELGLCSSLEEIYLAENFFNGFIPSFFRTSRGIRKVDLSRNNF 550
IP ++ +L+E+ +A N F ++K+ L N +
Sbjct: 435 SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPW 480
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 115 bits (290), Expect = 2e-27
Identities = 92/490 (18%), Positives = 167/490 (34%), Gaps = 25/490 (5%)
Query: 52 ITCDLRSKALSGLLSPQIGNLSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVG 111
D L + +N+ N I + L +L L++S N +
Sbjct: 3 FLVDRSKNGLIHVPK---DLSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQY 59
Query: 112 KIPANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTG-GIPPFLGNLTS 170
+ + L L L +NKL I LK L L N I GN++
Sbjct: 60 LDISVFKFNQELEYLDLSHNKL-VKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQ 116
Query: 171 LEVVSLAGNPFGGNIPDSLGQLKELKTLGIGGNNLSGSIPP-SIYNLSFLVIFSV-SENQ 228
L+ + L+ + + L K L + G P + + + + V N+
Sbjct: 117 LKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNK 176
Query: 229 MHGSLPPSLGLYFPNLKLFQTNENFFSGSIPISLSNASKLEYVEIASNSFFGKLSVN--- 285
+ NL+L LS +KL+ SN +
Sbjct: 177 EFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNS 236
Query: 286 -FGGMKNLSYLILEYNNLGS----GESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSI 340
++ + + + Y ++ + G+ D F S + L + + + F I
Sbjct: 237 FIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFG-FPQSYI 295
Query: 341 ANLSSQLQILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDF 400
+ S + I + + L N T ++ + G L L+ L
Sbjct: 296 YEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLIL 355
Query: 401 GGNHFS--GEIPSTLGNLSSLYEIFLGDNNLSGVIPSSL-GNLERLAILEMFANELSGTI 457
N +I + SL ++ + N++S + L L M +N L+ TI
Sbjct: 356 QMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTI 415
Query: 458 PGDIFNISSLSVSLDLAENHFVGSIPPRIGNLKALRCFDVSNNDLSGEIPSELGLCSSLE 517
+ + V LDL N SIP ++ L+AL+ +V++N L +SL+
Sbjct: 416 FRCLP--PRIKV-LDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQ 471
Query: 518 EIYLAENFFN 527
+I+L N ++
Sbjct: 472 KIWLHTNPWD 481
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 69.9 bits (171), Expect = 1e-12
Identities = 57/358 (15%), Positives = 113/358 (31%), Gaps = 70/358 (19%)
Query: 36 ILNSWNDSRHFCEWEGITCDLRSKALSGLLS--PQIGNLSFLREINLMNNTIQGEI---P 90
IL+ + E I C L S LS ++ L + L N
Sbjct: 181 ILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRI 240
Query: 91 LEFGRLRRLETLLLSDNSLVGKIPANLSYCS-----RLTVLVLGNNKLVGSIPFEFVSLY 145
L+ + +S+ L G++ S L++ + ++ + +
Sbjct: 241 LQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFS 300
Query: 146 KLKQLALPMNNLTGGIPPFLGNLTSLEVVSLAGNPFGGNIPDSLGQLKELKTLGIGGNNL 205
+ ++ ++ + + N + ++ G L EL+TL + N L
Sbjct: 301 NMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQL 360
Query: 206 SGSIPPSIYNLSFLVIFSVSENQMHGSLPPSLGLYFPNLKLFQTNENFFSGSIPISLSNA 265
L + +K
Sbjct: 361 K-------------------------ELSKIAEM-TTQMK-------------------- 374
Query: 266 SKLEYVEIASNSF-FGKLSVNFGGMKNLSYLILEYNNLGSGESDEMGFMNSLANCSKLQV 324
L+ ++I+ NS + + + K+L L + N L + +++V
Sbjct: 375 -SLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--------PRIKV 425
Query: 325 LSLGGNQFRGALPHSIANLSSQLQILVLGTNQLYGSIPSGI-GNLVNLYSLQTEENQF 381
L L N+ + ++P + L LQ L + +NQL S+P GI L +L + N +
Sbjct: 426 LDLHSNKIK-SIPKQVVKL-EALQELNVASNQL-KSVPDGIFDRLTSLQKIWLHTNPW 480
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 63.0 bits (153), Expect = 1e-10
Identities = 42/327 (12%), Positives = 101/327 (30%), Gaps = 58/327 (17%)
Query: 290 KNLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLSSQLQI 349
+ + L + N + + + + + SKL++L + N+ + L S+ + +L+
Sbjct: 21 QKTTILNISQNYISELWT------SDILSLSKLRILIISHNRIQ-YLDISVFKFNQELEY 73
Query: 350 LVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSIP--KEMGKLLNLQGLDFGGNHFSG 407
L L N+L I VNL L N F ++P KE G + L+ L H
Sbjct: 74 LDLSHNKL-VKISCH--PTVNLKHLDLSFNAFD-ALPICKEFGNMSQLKFLGLSTTHLEK 129
Query: 408 EIPSTLGNLSSLYEIFLGDNNLSGVIPSSLGNLERLAILEMFANELSGTIPGDIFNISS- 466
+ +L+ + + L+ + + I ++S
Sbjct: 130 SSVLPIAHLNISKVLLVLGETY--GEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVK 187
Query: 467 ---------LSVSLDLAENHFVGSIPPRIGNLKALRCFDVSNNDLSGEIPSELGLC---S 514
+ L+ + + SI ++ L ++N + + + +
Sbjct: 188 TVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHT 247
Query: 515 SLEEIYLAENFFNGFIPS--FFRTSRGIRKVDLSR------------------------- 547
++ ++ G + F + ++ + + +
Sbjct: 248 TVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNF 307
Query: 548 ---NNFFGQIPIFLEALSLEYLNLSFN 571
+ + +L+ S N
Sbjct: 308 TVSGTRMVHMLCPSKISPFLHLDFSNN 334
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 63.0 bits (153), Expect = 1e-10
Identities = 63/413 (15%), Positives = 127/413 (30%), Gaps = 57/413 (13%)
Query: 184 NIPDSLGQLKELKTLGIGGNNLSGSIPPSIYNLSFLVIFSVSENQMHGSLPPSLGLYFPN 243
++ L I N +S I +LS L I +S N++ L S+
Sbjct: 18 DLSQKT------TILNISQNYISELWTSDILSLSKLRILIISHNRIQ-YLDISV------ 64
Query: 244 LKLFQTNENFFSGSIPISLSNASKLEYVEIASNSFFGKLSVNFGGMKNLSYLILEYNNLG 303
F+ N+ LEY++++ N + ++ NL +L L +N
Sbjct: 65 ---FKFNQE---------------LEYLDLSHNKL---VKISCHPTVNLKHLDLSFNAF- 102
Query: 304 SGESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLSSQLQILVLGTNQLYGSIPS 363
D + N S+L+ L L + IA+L+ +LVLG P
Sbjct: 103 ----DALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPE 158
Query: 364 GIGNLV--NLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYE 421
G+ + +L+ + +F + + + NL+ + + L L+ L
Sbjct: 159 GLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQT 218
Query: 422 IF------LGDNNLSGVIPSSLGNL---ERLAILEMFANELSGTIPGDIFNISSLSVS-- 470
L + + + L + + +L G + F+ S S+
Sbjct: 219 NPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKAL 278
Query: 471 --LDLAENHFVGSIPPRIGNLKALRCFDVSNNDLSGEIPSELGLCSSLEEIYLAENFFNG 528
+ + F + + + + S + + N
Sbjct: 279 SIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTD 338
Query: 529 FIPSFFRTSRGIRKVDLSRNNF---FGQIPIFLEALSLEYLNLSFNDFEGRLP 578
+ + + L N + + SL+ L++S N
Sbjct: 339 TVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEK 391
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 61.0 bits (148), Expect = 6e-10
Identities = 43/254 (16%), Positives = 85/254 (33%), Gaps = 18/254 (7%)
Query: 341 ANLSSQLQILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDF 400
+LS + IL + N + S I +L L L N+ L+ LD
Sbjct: 17 KDLSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDL 76
Query: 401 GGNHFSGEIPSTLGNLSSLYEIFLGDNNLSGV-IPSSLGNLERLAILEMFANELSGTIPG 459
N +I +L + L N + I GN+ +L L + L +
Sbjct: 77 SHNKLV-KISC--HPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVL 133
Query: 460 DIFNISSLSVSLDLAENHFVGSIPPRIGNLKALR-------------CFDVSNNDLSGEI 506
I +++ V L L E + P + + DVS ++
Sbjct: 134 PIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLE 193
Query: 507 PSELGLCSSLEEIYLAENFFNGFIPSFFRTSRGIRKVDLSRNNFFGQIPIFLEALSLEYL 566
S + + + + ++ + ++ + N+F +I + ++ Y
Sbjct: 194 LSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFI-RILQLVWHTTVWYF 252
Query: 567 NLSFNDFEGRLPTR 580
++S +G+L R
Sbjct: 253 SISNVKLQGQLDFR 266
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 116 bits (292), Expect = 2e-27
Identities = 77/379 (20%), Positives = 135/379 (35%), Gaps = 59/379 (15%)
Query: 75 LREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLTVLVLGNNKLV 134
+N+ + + +P + TL++ DN+L +PA L L + N+L
Sbjct: 42 NAVLNVGESGLT-TLPDCLPA--HITTLVIPDNNLT-SLPALP---PELRTLEVSGNQLT 94
Query: 135 GSIPFEFVSLYKLKQLALPMNNLTGGIPPFLGNLTSLEVVSLAGNPFGGNIPDSLGQLKE 194
S+P L +L + P+ +L P L L + GN ++P L+E
Sbjct: 95 -SLPVLPPGLLELSIFSNPLTHL----PALPSGLCKLW---IFGNQL-TSLPVLPPGLQE 145
Query: 195 LKTLGIGGNNLSGSIPPSIYNLSFLVIFSVSENQMHGSLPPSLGLYFPNLKLFQTNENFF 254
L + N L+ S+P L L NQ+ SLP L+ ++N
Sbjct: 146 LS---VSDNQLA-SLPALPSELCKL---WAYNNQLT-SLPMLPS----GLQELSVSDNQL 193
Query: 255 SGSIPISLSNASKLEYVEIASNSFFGKLSVNFGGMKNLSYLILEYNNLGSGESDEMGFMN 314
+ S+P S L + +N +L+ L LI+ N L
Sbjct: 194 A-SLPTLPSE---LYKLWAYNN----RLTSLPALPSGLKELIVSGNRL-----------T 234
Query: 315 SL-ANCSKLQVLSLGGNQFRGALPHSIANLSSQLQILVLGTNQLYGSIPSGIGNLVNLYS 373
SL S+L+ L + GN+ +LP + L L + NQL +P + +L + +
Sbjct: 235 SLPVLPSELKELMVSGNRLT-SLPMLPSG----LLSLSVYRNQL-TRLPESLIHLSSETT 288
Query: 374 LQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLGDNNLSGVI 433
+ E N + + + + G ++ + + D +
Sbjct: 289 VNLEGNPLS-ERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLV---- 343
Query: 434 PSSLGNLERLAILEMFANE 452
P+ G MF E
Sbjct: 344 PAREGEPAPADRWHMFGQE 362
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 115 bits (290), Expect = 3e-27
Identities = 77/326 (23%), Positives = 122/326 (37%), Gaps = 54/326 (16%)
Query: 119 YCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTGGIPPFLGNLTSLEVVSLAG 178
+ VL +G + L ++P + + L +P NNLT +P L +LE ++G
Sbjct: 38 LNNGNAVLNVGESGL-TTLPDCLPA--HITTLVIPDNNLTS-LPALPPELRTLE---VSG 90
Query: 179 NPFGGNIPDSLGQLKELKTLGIGGNNLSGSIPPSIYNLSFLVIFSVSENQMHGSLPPSLG 238
N ++P L EL +L ++P + L + NQ+ SLP
Sbjct: 91 NQLT-SLPVLPPGLLELSIFSNPLTHLP-ALPSGLCKLW------IFGNQLT-SLPVLPP 141
Query: 239 LYFPNLKLFQTNENFFSGSIPISLSNASKLEYVEIASNSFFGKLSVNFGGMKNLSYLILE 298
L+ ++N + S+P S KL A N+ L + L L +
Sbjct: 142 ----GLQELSVSDNQLA-SLPALPSELCKLW----AYNNQLTSLPMLPS---GLQELSVS 189
Query: 299 YNNLGSGESDEMGFMNSL-ANCSKLQVLSLGGNQFRGALPHSIANLSSQLQILVLGTNQL 357
N L SL S+L L N+ +LP S L+ L++ N+L
Sbjct: 190 DNQL-----------ASLPTLPSELYKLWAYNNRLT-SLPALP----SGLKELIVSGNRL 233
Query: 358 YGSIPSGIGNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLS 417
S+P L L N+ T S+P L L N + +P +L +LS
Sbjct: 234 -TSLPVLPSELKELM---VSGNRLT-SLPMLPS---GLLSLSVYRNQLT-RLPESLIHLS 284
Query: 418 SLYEIFLGDNNLSGVIPSSLGNLERL 443
S + L N LS +L +
Sbjct: 285 SETTVNLEGNPLSERTLQALREITSA 310
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 103 bits (258), Expect = 3e-23
Identities = 53/271 (19%), Positives = 96/271 (35%), Gaps = 52/271 (19%)
Query: 317 ANCSKLQVLSLGGNQFRGALPHSIANLSSQLQILVLGTNQLYGSIPSGIGNLVNLYSLQT 376
+ VL++G + LP + + LV+ N L S+P+ L L
Sbjct: 37 CLNNGNAVLNVGESGLT-TLPDCLPA---HITTLVIPDNNL-TSLPALPPELRTLE---V 88
Query: 377 EENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLGDNNLSGVIPSS 436
NQ T S+P LL L H +P+ L L+ + N L+ +P
Sbjct: 89 SGNQLT-SLPVLPPGLLELSIFSNPLTH----LPALPSGLCKLW---IFGNQLT-SLPVL 139
Query: 437 LGNLERLAILEMFANELSGTIPGDIFNISSLSVS----------------LDLAENHFVG 480
L+ L + N+L+ ++P + L L +++N
Sbjct: 140 PPGLQE---LSVSDNQLA-SLPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLA- 194
Query: 481 SIPPRIGNLKALRCFDVSNNDLSGEIPSELGLCSSLEEIYLAENFFNGFIPSFFRTSRGI 540
S+P L L NN L+ +P+ L+E+ ++ N +
Sbjct: 195 SLPTLPSELYKLWA---YNNRLT-SLPALPS---GLKELIVSGNRLTSLPVLP----SEL 243
Query: 541 RKVDLSRNNFFGQIPIFLEALSLEYLNLSFN 571
+++ +S N +P+ L L++ N
Sbjct: 244 KELMVS-GNRLTSLPMLPS--GLLSLSVYRN 271
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 78.4 bits (193), Expect = 2e-15
Identities = 55/310 (17%), Positives = 108/310 (34%), Gaps = 34/310 (10%)
Query: 65 LSPQIGNLSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLT 124
L L +E+++ +N + +P L +L +N L +PA S L
Sbjct: 176 LPMLPSGL---QELSVSDNQLA-SLPTLPSELYKLW---AYNNRLT-SLPALPS---GLK 224
Query: 125 VLVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTGGIPPFLGNLTSLEVVSLAGNPFGGN 184
L++ N+L S+P V +LK+L + N LT +P L SL S+ N
Sbjct: 225 ELIVSGNRL-TSLP---VLPSELKELMVSGNRLTS-LPMLPSGLLSL---SVYRNQLT-R 275
Query: 185 IPDSLGQLKELKTLGIGGNNLSGSIPPSIYNLSFLVIFSVSENQMHGSLPPSLGLYFPNL 244
+P+SL L T+ + GN LS ++ ++ +S + + +
Sbjct: 276 LPESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRA-- 333
Query: 245 KLFQTNENFFSGSIPISLSNASKLEYV--EIASNSFFGKLSVNFGGMKNLSYLILEYNNL 302
L ++ + + A + E +++F L + +
Sbjct: 334 -LHLAAADWLVPAREGEPAPADRWHMFGQEDNADAFSLFL--------DRLSETENFIKD 384
Query: 303 GSGESDEMGFMNSLANCSKL-QVLSLGGNQFRGALPHSIANLSSQLQILVLGTNQLYGSI 361
++ ++ LA L + + + Q++ + L N G
Sbjct: 385 AGFKAQISSWLAQLAEDEALRANTFAMATEATSSCEDRVTFFLHQMKNVQLVHNAEKGQY 444
Query: 362 PSGIGNLVNL 371
+ + LV
Sbjct: 445 DNDLAALVAT 454
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 56.4 bits (136), Expect = 2e-08
Identities = 28/164 (17%), Positives = 57/164 (34%), Gaps = 24/164 (14%)
Query: 416 LSSLYEIFLGDNNLSGVIPSSLGNLERLAILEMFANELSGTIPGDIFNISSLSVSLDLAE 475
+ + +G++ L+ +P L + L + N L+ ++P + +L+++
Sbjct: 39 NNGNAVLNVGESGLT-TLPDCLPA--HITTLVIPDNNLT-SLPALPPEL----RTLEVSG 90
Query: 476 NHFVGSIPPRIGNLKALRCFDVSNNDLSGEIPSELGLCSSLEEIYLAENFFNGFIPSFFR 535
N S+P L L F L S L ++++ N
Sbjct: 91 NQLT-SLPVLPPGLLELSIFSNPLTHLPALP-------SGLCKLWIFGNQLTSLPVLP-- 140
Query: 536 TSRGIRKVDLSRNNFFGQIPIFLEALSLEYLNLSFNDFEGRLPT 579
G++++ +S +N +P L L N LP
Sbjct: 141 --PGLQELSVS-DNQLASLPALPS--ELCKLWAYNNQLT-SLPM 178
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 113 bits (285), Expect = 5e-27
Identities = 70/366 (19%), Positives = 136/366 (37%), Gaps = 47/366 (12%)
Query: 47 CEWEGITCDLRSKALSGLLSPQIGNLSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSD 106
C + K + P+ G + R ++L N I+ EF LE L L++
Sbjct: 9 CSAQDRAVLCHRKRFVAV--PE-GIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNE 65
Query: 107 NSLVGKIPAN-LSYCSRLTVLVLGNNKLVGSIPFE-FVSLYKLKQLALPMNNLTGGIPPF 164
N + + + L L L +N+L IP F L L +L + N + + +
Sbjct: 66 NIV-SAVEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIV-ILLDY 122
Query: 165 L-GNLTSLEVVSLAGNPFGGNIPDSLGQLKELKTLGIGGNNLSGSIPP-SIYNLSFLVIF 222
+ +L +L+ + + N + L L+ L + NL+ SIP ++ +L L++
Sbjct: 123 MFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVL 181
Query: 223 SVSENQMHGSLPPSLGLYFPNLKLFQTNENFFSGSIPISLSNASKLEYVEIASNSFFGKL 282
+ ++ ++ S +L+ +EI+ + +
Sbjct: 182 RLRHLNIN-AIRDY------------------------SFKRLYRLKVLEISHWPYLDTM 216
Query: 283 SVNFGGMKNLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIAN 342
+ N NL+ L + + NL + ++ + L+ L+L N +
Sbjct: 217 TPNCLYGLNLTSLSITHCNLTAVPY------LAVRHLVYLRFLNLSYNPISTIEGSMLHE 270
Query: 343 LSSQLQILVLGTNQLYGSIPSGI-GNLVNLYSLQTEENQFTGSIPKEM-GKLLNLQGLDF 400
L +LQ + L QL + L L L NQ T ++ + + + NL+ L
Sbjct: 271 L-LRLQEIQLVGGQL-AVVEPYAFRGLNYLRVLNVSGNQLT-TLEESVFHSVGNLETLIL 327
Query: 401 GGNHFS 406
N +
Sbjct: 328 DSNPLA 333
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 104 bits (262), Expect = 5e-24
Identities = 64/307 (20%), Positives = 115/307 (37%), Gaps = 21/307 (6%)
Query: 291 NLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLSSQLQIL 350
L L N + + D A+ L+ L L N P + NL + L+ L
Sbjct: 33 ETRLLDLGKNRIKTLNQD------EFASFPHLEELELNENIVSAVEPGAFNNLFN-LRTL 85
Query: 351 VLGTNQLYGSIPSGI-GNLVNLYSLQTEENQFTGSIPKEM-GKLLNLQGLDFGGNHFSGE 408
L +N+L IP G+ L NL L EN+ + M L NL+ L+ G N
Sbjct: 86 GLRSNRL-KLIPLGVFTGLSNLTKLDISENKIV-ILLDYMFQDLYNLKSLEVGDNDLV-Y 142
Query: 409 IPS-TLGNLSSLYEIFLGDNNLSGVIPSSLGNLERLAILEMFANELSGTIPGDIFNISSL 467
I L+SL ++ L NL+ + +L +L L +L + ++ I F
Sbjct: 143 ISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNIN-AIRDYSFKRLYR 201
Query: 468 SVSLDLAENHFVGSIPPRIGNLKALRCFDVSNNDLSGEIPSE-LGLCSSLEEIYLAENFF 526
L+++ ++ ++ P L +++ +L+ +P + L + L+ N
Sbjct: 202 LKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPI 260
Query: 527 NGFIPSFFRTSRGIRKVDLSRNNFFGQIP--IFLEALSLEYLNLSFNDFEGRLPTRGIFA 584
+ S ++++ L + F L LN+S N L +F
Sbjct: 261 STIEGSMLHELLRLQEIQLVGGQL-AVVEPYAFRGLNYLRVLNVSGNQLT-TLE-ESVFH 317
Query: 585 NASAISV 591
+ +
Sbjct: 318 SVGNLET 324
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 103 bits (259), Expect = 1e-23
Identities = 68/330 (20%), Positives = 123/330 (37%), Gaps = 20/330 (6%)
Query: 202 GNNLSGSIPPSIYNLSFLVIFSVSENQMHGSLPPSLGLYFPNLKLFQTNENFFSGSIPIS 261
++P I + + + +N++ +L FP+L+ + NEN S P +
Sbjct: 20 RKRFV-AVPEGI--PTETRLLDLGKNRIK-TLNQDEFASFPHLEELELNENIVSAVEPGA 75
Query: 262 LSNASKLEYVEIASNSFFGKLSVN-FGGMKNLSYLILEYNNLGSGESDEMGFMNSLANCS 320
+N L + + SN + + F G+ NL+ L + N + +
Sbjct: 76 FNNLFNLRTLGLRSNRL-KLIPLGVFTGLSNLTKLDISENKIVILLDY------MFQDLY 128
Query: 321 KLQVLSLGGNQFRGALPHSIANLSSQLQILVLGTNQLYGSIPSGI-GNLVNLYSLQTEEN 379
L+ L +G N + + L+S L+ L L L SIP+ +L L L+
Sbjct: 129 NLKSLEVGDNDLVYISHRAFSGLNS-LEQLTLEKCNL-TSIPTEALSHLHGLIVLRLRHL 186
Query: 380 QFTGSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLGDNNLSGVIPSSLGN 439
+L L+ L+ + + +L + + NL+ V ++ +
Sbjct: 187 NINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRH 246
Query: 440 LERLAILEMFANELSGTIPGDIF-NISSLSVSLDLAENHFVGSIPPRI-GNLKALRCFDV 497
L L L + N +S TI G + + L + L + + P L LR +V
Sbjct: 247 LVYLRFLNLSYNPIS-TIEGSMLHELLRLQ-EIQLVGGQ-LAVVEPYAFRGLNYLRVLNV 303
Query: 498 SNNDLSGEIPSELGLCSSLEEIYLAENFFN 527
S N L+ S +LE + L N
Sbjct: 304 SGNQLTTLEESVFHSVGNLETLILDSNPLA 333
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 100 bits (252), Expect = 9e-23
Identities = 60/326 (18%), Positives = 106/326 (32%), Gaps = 25/326 (7%)
Query: 232 SLPPSLGLYFPNLKLFQTNENFFSGSIPISLSNASKLEYVEIASNSFFGKLSVN-FGGMK 290
++P + +L +N ++ LE +E+ N + F +
Sbjct: 25 AVPEGI---PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIV-SAVEPGAFNNLF 80
Query: 291 NLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLSSQLQIL 350
NL L L N L S L L + N+ L + +L L+ L
Sbjct: 81 NLRTLGLRSNRLKLIPLG------VFTGLSNLTKLDISENKIVILLDYMFQDLY-NLKSL 133
Query: 351 VLGTNQLYGSIPSGI-GNLVNLYSLQTEENQFTGSIPKEM-GKLLNLQGLDFGGNHFSGE 408
+G N L I L +L L E+ T SIP E L L L + +
Sbjct: 134 EVGDNDL-VYISHRAFSGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNINAI 191
Query: 409 IPSTLGNLSSLYEIFLGDNNLSGVIPSSLGNLERLAILEMFANELSGTIPGDIF-NISSL 467
+ L L + + + + L L + L+ +P ++ L
Sbjct: 192 RDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYL 250
Query: 468 SVSLDLAENHFVGSIPPRI-GNLKALRCFDVSNNDLSGEIPSEL--GLCSSLEEIYLAEN 524
L+L+ N +I + L L+ + L+ + GL + L + ++ N
Sbjct: 251 R-FLNLSYNPIS-TIEGSMLHELLRLQEIQLVGGQLA-VVEPYAFRGL-NYLRVLNVSGN 306
Query: 525 FFNGFIPSFFRTSRGIRKVDLSRNNF 550
S F + + + L N
Sbjct: 307 QLTTLEESVFHSVGNLETLILDSNPL 332
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 98.6 bits (246), Expect = 5e-22
Identities = 54/258 (20%), Positives = 99/258 (38%), Gaps = 13/258 (5%)
Query: 320 SKLQVLSLGGNQFRGALPHSIANLSSQLQILVLGTNQLYGSIPSGI-GNLVNLYSLQTEE 378
++ ++L LG N+ + A+ L+ L L N + ++ G NL NL +L
Sbjct: 32 TETRLLDLGKNRIKTLNQDEFASFP-HLEELELNENIV-SAVEPGAFNNLFNLRTLGLRS 89
Query: 379 NQFTGSIPKEM-GKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLGDNNLSGVIPSSL 437
N+ IP + L NL LD N + +L +L + +GDN+L + +
Sbjct: 90 NRLK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAF 148
Query: 438 GNLERLAILEMFANELSGTIPGDIF-NISSLSVSLDLAENHFVGSIPPRI-GNLKALRCF 495
L L L + L+ +IP + ++ L + L L + +I L L+
Sbjct: 149 SGLNSLEQLTLEKCNLT-SIPTEALSHLHGL-IVLRLRHLNIN-AIRDYSFKRLYRLKVL 205
Query: 496 DVSNNDLSGEIPSELGLCSSLEEIYLAENFFNGFIPSFFRTSRGIRKVDLSRNNFFGQIP 555
++S+ + +L + + R +R ++LS N I
Sbjct: 206 EISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNP-ISTIE 264
Query: 556 --IFLEALSLEYLNLSFN 571
+ E L L+ + L
Sbjct: 265 GSMLHELLRLQEIQLVGG 282
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 85.9 bits (213), Expect = 6e-18
Identities = 47/230 (20%), Positives = 90/230 (39%), Gaps = 12/230 (5%)
Query: 360 SIPSGIGNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSL 419
++P GI L +N+ E +L+ L+ N S P NL +L
Sbjct: 25 AVPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNL 82
Query: 420 YEIFLGDNNLSGVIPSSLGNLERLAILEMFANELSGTIPGDIF-NISSLSVSLDLAENHF 478
+ L N L + L L L++ N++ + +F ++ +L SL++ +N
Sbjct: 83 RTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIV-ILLDYMFQDLYNL-KSLEVGDNDL 140
Query: 479 VGSIPPRI-GNLKALRCFDVSNNDLSGEIPSE-LGLCSSLEEIYLAENFFNGFIPSFFRT 536
V I R L +L + +L+ IP+E L L + L N F+
Sbjct: 141 V-YISHRAFSGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKR 198
Query: 537 SRGIRKVDLSRNNFFGQI-PIFLEALSLEYLNLSFNDFEGRLPTRGIFAN 585
++ +++S + + P L L+L L+++ + +P +
Sbjct: 199 LYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVP-YLAVRH 246
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 109 bits (275), Expect = 9e-26
Identities = 76/413 (18%), Positives = 140/413 (33%), Gaps = 46/413 (11%)
Query: 75 LREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPANL-SYCSRLTVLVLGNNKL 133
+ ++L N+I F RL+ L+ L + + I N S L +L L N+
Sbjct: 32 VNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQF 91
Query: 134 VGSIPFE-FVSLYKLKQLALPMNNLTGGIPP--FLGNLTSLEVVSLAGNPFGGNIPDSL- 189
+ + F L L+ L L NL G + F LTSLE++ L N P S
Sbjct: 92 L-QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFF 150
Query: 190 GQLKELKTLGIGGNNLSGSIPPSI-YNLSFLVIFSVSENQMHGSLPPSLGLYFPNLKLFQ 248
++ L + N + SI N L ++ L
Sbjct: 151 LNMRRFHVLDLTFNKVK-SICEEDLLNFQGKHF---------------TLLRLSSITLQD 194
Query: 249 TNENFFSGSIPISLSNASKLEYVEIASNSFFGKLSVNFGGMKNLSYLILEYNNLGSGESD 308
NE + + + + ++++ N F ++ F + + +
Sbjct: 195 MNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSN------ 248
Query: 309 EMGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLSSQLQILVLGTNQLYGSIPSGI-GN 367
N ++ F+G S ++ L +++ ++ + +
Sbjct: 249 ---SYNMGSSFGHTNFKDPDNFTFKGLEA-------SGVKTCDLSKSKI-FALLKSVFSH 297
Query: 368 LVNLYSLQTEENQFTGSIPKEM-GKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLGD 426
+L L +N+ I L +L L+ N NL L + L
Sbjct: 298 FTDLEQLTLAQNEIN-KIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSY 356
Query: 427 NNLSGVIPSSLGNLERLAILEMFANELSGTIPGDIF-NISSLSVSLDLAENHF 478
N++ + S L L L + N+L ++P IF ++SL + L N +
Sbjct: 357 NHIRALGDQSFLGLPNLKELALDTNQLK-SVPDGIFDRLTSLQK-IWLHTNPW 407
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 84.4 bits (209), Expect = 2e-17
Identities = 67/399 (16%), Positives = 132/399 (33%), Gaps = 53/399 (13%)
Query: 208 SIPPSIYNLSFLVIFSVSENQMHGSLPPSLGLYFPNLKLFQTNENFFSGSIPI-SLSNAS 266
+P + + S N + L + +L+ + + I + S
Sbjct: 27 ELPAHVNYVDL------SLNSI-AELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLS 79
Query: 267 KLEYVEIASNSFFGKLSVN-FGGMKNLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVL 325
L +++ N F +L F G+ NL L L NL N + L++L
Sbjct: 80 SLIILKLDYNQF-LQLETGAFNGLANLEVLTLTQCNLDGAVLSG----NFFKPLTSLEML 134
Query: 326 SLGGNQFRGALPHSIANLSSQLQILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSI 385
L N + P S + +L L N++ SI L+N
Sbjct: 135 VLRDNNIKKIQPASFFLNMRRFHVLDLTFNKV-KSICEED--LLNFQGKHFTLL------ 185
Query: 386 PKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLGDNNLSGVIPSSLGNLERLAI 445
+L ++ D E +S+ + L N + +
Sbjct: 186 -----RLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTK 240
Query: 446 LEM-----FANELSGTIPGDIFNISSLSV---------SLDLAENHFVGSIPPRI-GNLK 490
++ N S + + + + + DL+++ ++ + +
Sbjct: 241 IQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKI-FALLKSVFSHFT 299
Query: 491 ALRCFDVSNNDLSGEIPSEL--GLCSSLEEIYLAENFFNGFIPSFFRTSRGIRKVDLSRN 548
L ++ N+++ +I GL + L ++ L++NF F + +DLS N
Sbjct: 300 DLEQLTLAQNEIN-KIDDNAFWGL-THLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYN 357
Query: 549 NFFGQIP--IFLEALSLEYLNLSFNDFEGRLPTRGIFAN 585
+ + FL +L+ L L N + +P GIF
Sbjct: 358 H-IRALGDQSFLGLPNLKELALDTNQLK-SVP-DGIFDR 393
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 54.4 bits (131), Expect = 5e-08
Identities = 44/275 (16%), Positives = 96/275 (34%), Gaps = 30/275 (10%)
Query: 71 NLSFLREINLMNNTIQGEIPLEFGRLRRLETLLL----------SDNSLVGKIPANLSYC 120
N+ ++L N ++ + + LL ++ L + N
Sbjct: 152 NMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKN 211
Query: 121 SRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTGGIPPFLGNLTSLEVVSLAGNP 180
+ +T L L N S+ F ++ + + + + +
Sbjct: 212 TSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNM---GSSFGHTNFKDPDNFT 268
Query: 181 FGGNIPDSLGQLKELKTLGIGGNNLSGSIPPSI-YNLSFLVIFSVSENQMHGSLPPSLGL 239
F G + KT + + + ++ S+ + + L ++++N+++ + +
Sbjct: 269 FKGLEASGV------KTCDLSKSKIF-ALLKSVFSHFTDLEQLTLAQNEIN-KIDDNAFW 320
Query: 240 YFPNLKLFQTNENFFSGSIPISLSNASKLEYVEIASNSFFGKLSVN-FGGMKNLSYLILE 298
+L ++NF N KLE ++++ N L F G+ NL L L+
Sbjct: 321 GLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHI-RALGDQSFLGLPNLKELALD 379
Query: 299 YNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFR 333
N L +S G + L + LQ + L N +
Sbjct: 380 TNQL---KSVPDGIFDRL---TSLQKIWLHTNPWD 408
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 110 bits (277), Expect = 9e-26
Identities = 81/466 (17%), Positives = 160/466 (34%), Gaps = 24/466 (5%)
Query: 99 LETLLLSDNSLVGKIPANLSYCSRLTVLVLGNNKLVGSIPFE-FVSLYKLKQLALPMNNL 157
+ L LS NS+ ++S+ S L VL L +N++ S+ F F+ L+ L + N L
Sbjct: 54 TKALSLSQNSISELRMPDISFLSELRVLRLSHNRI-RSLDFHVFLFNQDLEYLDVSHNRL 112
Query: 158 TGGIPPFLGNLTSLEVVSLAGNPFGGNIPDS--LGQLKELKTLGIGGNNLSGSIPPSIYN 215
I + SL + L+ N F +P G L +L LG+ + +
Sbjct: 113 QN-ISC--CPMASLRHLDLSFNDFD-VLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAH 168
Query: 216 LSFLVIFS-VSENQMHGSLPPSL-GLYFPNLKLFQTNENFFSGSIPISLSNASKLE--YV 271
L I + + G SL L L + FS + +S++ L+ +
Sbjct: 169 LHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNI 228
Query: 272 EIASNSFFGKLSVNFGGMKNLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQ 331
++ + ++ + + L + ++ + + ++ L++
Sbjct: 229 KLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFF-WPRPVEYLNIYNLT 287
Query: 332 FRGALPHSIANLSS----QLQILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSIPK 387
+ S L I + S + + +
Sbjct: 288 ITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMV 347
Query: 388 EMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLGDNNLSGV--IPSSLGNLERLAI 445
+ L+F N F+ + L L + L N L + N+ L
Sbjct: 348 CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLET 407
Query: 446 LEMFANELSGTIPGDIFNISSLSVSLDLAENHFVGSIPPRI-GNLKALRCFDVSNNDLSG 504
L++ N L+ + + L+L+ N GS+ + +K L D+ NN +
Sbjct: 408 LDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVL---DLHNNRIM- 463
Query: 505 EIPSELGLCSSLEEIYLAENFFNGFIPSFFRTSRGIRKVDLSRNNF 550
IP ++ +L+E+ +A N F ++ + L N +
Sbjct: 464 SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPW 509
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 105 bits (264), Expect = 4e-24
Identities = 81/498 (16%), Positives = 163/498 (32%), Gaps = 59/498 (11%)
Query: 45 HFCEWEGITCDLRSKALSGLLSPQIGNLSFLREINLMNNTIQGEIPLEFGRLRRLETLLL 104
F D ++ L+ + + ++L N+I + L L L L
Sbjct: 27 PFSNELESMVDYSNRNLTHVPK---DLPPRTKALSLSQNSISELRMPDISFLSELRVLRL 83
Query: 105 SDNSLVGKIPANL-SYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTG-GIP 162
S N + + ++ + L L + +N+L +I + L+ L L N+ +
Sbjct: 84 SHNRI-RSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLDLSFNDFDVLPVC 139
Query: 163 PFLGNLTSLEVVSLAGNPFGGNIPDSLGQLKELK-TLGIGGNNLSGSIPPSIYNLSFLVI 221
GNLT L + L+ F + L L + ++ G S+ + V+
Sbjct: 140 KEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVL 199
Query: 222 ------FSVSENQMHGSLPPSLGLYFPNLKLFQTNENFFSGSIPISLSNA---------- 265
S+ Q++ S+ L N+KL N +
Sbjct: 200 HLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHI 259
Query: 266 ----------------SKLEYVEIASNSFFGKLSVNFGGMKNLSYLILEYNNLGSGE--S 307
+EY+ I + + ++ + L ++ +
Sbjct: 260 ETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLF 319
Query: 308 DEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLSSQLQILVLGTNQLYGSIPSGIGN 367
+ + A + + L + + S L N S+ G
Sbjct: 320 SKEALYSVFAE---MNIKMLSISDTP-FIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCST 375
Query: 368 LVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHF----SGEIPSTLGNLSSLYEIF 423
L L +L + N + K N+ L+ S T S+ +
Sbjct: 376 LKRLQTLILQRNGLK-NFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLN 434
Query: 424 LGDNNLSGVIPSSLGNLERLAILEMFANELSGTIPGDIFNISSLSVSLDLAENHFVGSIP 483
L N L+G + L ++ +L++ N + +IP D+ ++ +L L++A N S+P
Sbjct: 435 LSSNMLTGSVFRCL--PPKVKVLDLHNNRIM-SIPKDVTHLQALQ-ELNVASNQLK-SVP 489
Query: 484 PRI-GNLKALRCFDVSNN 500
+ L +L+ + +N
Sbjct: 490 DGVFDRLTSLQYIWLHDN 507
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 66.8 bits (163), Expect = 8e-12
Identities = 49/355 (13%), Positives = 109/355 (30%), Gaps = 66/355 (18%)
Query: 36 ILNSWNDSRHFCEWEGITCDLRSKALSGLLSPQIGNLSFLREINLMNNTIQGEIP---LE 92
+N ++ + I + + ++ L + L + + +
Sbjct: 212 QVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQ 271
Query: 93 FGRLRRLETLLLSDNSLVGKIP-ANLSYCSR----LTVLVLGNNKLVGSIPFEFVSLYKL 147
F R +E L + + ++ +I +Y L + + N + S + ++
Sbjct: 272 FFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEM 331
Query: 148 KQLALPMNNLTGGIPPFLGNLTSLEVVSLAGNPFGGNIPDSLGQLKELKTLGIGGNNLSG 207
L +++ + +S ++ N F ++ LK L+TL + N L
Sbjct: 332 NIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK- 390
Query: 208 SIPPSIYNLSFLVIFSVSENQMHGSLPPSLGLYFPNLKLFQTNENFFSGSIPISLSNASK 267
+ + + ++ SL
Sbjct: 391 NFFKVALMTKNMSSLETLDVSLN-SLNS-------------------------------- 417
Query: 268 LEYVEIASNSFFGKLSVNFGGMKNLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSL 327
+++ L L N L + K++VL L
Sbjct: 418 ------------HAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--------PKVKVLDL 457
Query: 328 GGNQFRGALPHSIANLSSQLQILVLGTNQLYGSIPSGI-GNLVNLYSLQTEENQF 381
N+ ++P + +L LQ L + +NQL S+P G+ L +L + +N +
Sbjct: 458 HNNRIM-SIPKDVTHL-QALQELNVASNQL-KSVPDGVFDRLTSLQYIWLHDNPW 509
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 64.5 bits (157), Expect = 5e-11
Identities = 41/264 (15%), Positives = 92/264 (34%), Gaps = 23/264 (8%)
Query: 320 SKLQVLSLGGNQFRGALPHSIANLSSQLQILVLGTNQLYGSIPSGI-GNLVNLYSLQTEE 378
+ + LSL N I+ LS +L++L L N++ S+ + +L L
Sbjct: 52 PRTKALSLSQNSISELRMPDISFLS-ELRVLRLSHNRI-RSLDFHVFLFNQDLEYLDVSH 109
Query: 379 NQFTGSIPKEMGKLLNLQGLDFGGNHF-SGEIPSTLGNLSSLYEIFLGDNNLSGVIPSSL 437
N+ +I + +L+ LD N F + GNL+ L + L + +
Sbjct: 110 NRLQ-NIS--CCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPV 166
Query: 438 GNLE-RLAILEMFANELSGTIPGDIFNISSLSVSLDLAENHFVGSIPPRIGNLKALRCFD 496
+L +L++ + + G + ++ + L N +L +++
Sbjct: 167 AHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPN-----------SLFSVQVNM 215
Query: 497 VSNNDLSGEIPSELGLCSSLEEIYLAENFFNGFIPSFFRTSRGIRKVDLSRNNFFGQIPI 556
N ++ + + E F + + ++ ++ + ++
Sbjct: 216 SVNALGHLQL---SNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSV-KLFQ 271
Query: 557 FLEALSLEYLNLSFNDFEGRLPTR 580
F +EYLN+ R+
Sbjct: 272 FFWPRPVEYLNIYNLTITERIDRE 295
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 58.0 bits (140), Expect = 6e-09
Identities = 51/324 (15%), Positives = 100/324 (30%), Gaps = 26/324 (8%)
Query: 267 KLEYVEIASNSFFGKLSVNFGGMKNLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLS 326
LEY++++ N +++ M +L +L L +N+ D + N +KL L
Sbjct: 101 DLEYLDVSHNRL---QNISCCPMASLRHLDLSFNDF-----DVLPVCKEFGNLTKLTFLG 152
Query: 327 LGGNQFRGALPHSIANLSSQLQILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQ------ 380
L +FR +A+L +L L + + G + N L +
Sbjct: 153 LSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIP-NTTVLHLVFHPNSLFSV 211
Query: 381 --FTGSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLGDNNLSGVIPSSLG 438
+L N++ D + + L
Sbjct: 212 QVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQ 271
Query: 439 NLERLAI--LEMFANELSGTIPGDIFNISSLSVS----LDLAENHFVGSIPPRIGNLKAL 492
+ L ++ ++ I + F S ++ + F+ S +
Sbjct: 272 FFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEM 331
Query: 493 RCFDVSNNDLSGEIPSELGLCSSLEEIYLAENFFNGFIPSFFRTSRGIRKVDLSRNNF-- 550
+S +D SS + +N F + T + ++ + L RN
Sbjct: 332 NIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKN 391
Query: 551 -FGQIPIFLEALSLEYLNLSFNDF 573
F + SLE L++S N
Sbjct: 392 FFKVALMTKNMSSLETLDVSLNSL 415
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 55.6 bits (134), Expect = 3e-08
Identities = 62/463 (13%), Positives = 119/463 (25%), Gaps = 74/463 (15%)
Query: 113 IPANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTGGIPP--FLGNLTS 170
+P +L R L L N + + L +L+ L L N + + F
Sbjct: 46 VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRS-LDFHVF-LFNQD 101
Query: 171 LEVVSLAGNPFGGNIPDSLGQLKELKTLGIGGNNLSGSIPPSIY--NLSFLVIFSVSENQ 228
LE + ++ N NI + L+ L + N+ +P NL+ L +S +
Sbjct: 102 LEYLDVSHNRLQ-NISC--CPMASLRHLDLSFNDFD-VLPVCKEFGNLTKLTFLGLSAAK 157
Query: 229 MHGSLPPSLGLYFPNLKLFQTNENFFSGSIPISLSNASKLEYVEIASNSFFGKLSVNFGG 288
L + + ++ + + +
Sbjct: 158 FR-QLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMS 216
Query: 289 MKNLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLSSQLQ 348
+ L +L L L + NC +L + L
Sbjct: 217 VNALGHLQLSNIKL------------NDENCQRLMTFLSELTR------------GPTLL 252
Query: 349 ILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGE 408
+ L + + ++ LN+ L E
Sbjct: 253 NVTLQHIETTWKCSVKLFQFFWPRPVEY----------------LNIYNLTITERIDREE 296
Query: 409 IPSTLGNLSSLYEIFLGDNNLSGVIPSSLGNLERLAILEMFANELSGTIPGDIFNISSLS 468
+ L SL + + + + I + ++ I S
Sbjct: 297 FTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTP-FIHMVCPPSPSSF 355
Query: 469 VSLDLAENHFVGSIPPRIGNLKALRCFDVSNNDLSGEIPSELGLCSSLEEIYLAENFFNG 528
L+ +N F S+ LK L+ + N L + ++ + + N
Sbjct: 356 TFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK-NFFKVALMTKNMSSLETLDVSLNS 414
Query: 529 FIPSFFRTSRGIRKVDLSRNNFFGQIPIFLEALSLEYLNLSFN 571
+ A S+ LNLS N
Sbjct: 415 LNSHAYDR-------------------TCAWAESILVLNLSSN 438
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 105 bits (265), Expect = 2e-25
Identities = 48/289 (16%), Positives = 99/289 (34%), Gaps = 21/289 (7%)
Query: 286 FGGMKNLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLSS 345
+ ++L + + + ++ L L GN +A +
Sbjct: 6 KQNGNRYKIEKVTDSSLKQALA------SLRQSAWNVKELDLSGNPLSQISAADLAPFTK 59
Query: 346 QLQILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHF 405
L++L L +N LY + +L L +L N E+ +++ L N+
Sbjct: 60 -LELLNLSSNVLY-ETLD-LESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNI 111
Query: 406 SGEIPSTLGNLSSLYEIFLGDNNLSGVIPSSLGNLERLAILEMFANELSGTIPGDIFNIS 465
S + I+L +N ++ + G R+ L++ NE+ ++ S
Sbjct: 112 S-RVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASS 168
Query: 466 SLSVSLDLAENHFVGSIPPRIGNLKALRCFDVSNNDLSGEIPSELGLCSSLEEIYLAENF 525
L+L N + ++ L+ D+S+N L+ + E + + I L N
Sbjct: 169 DTLEHLNLQYNFIY-DVKGQV-VFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNK 225
Query: 526 FNGFIPSFFRTSRGIRKVDLSRNNFFGQIPIFLEALSLEYLNLSFNDFE 574
I R S+ + DL N F + + ++ +
Sbjct: 226 LV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVK 273
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 105 bits (264), Expect = 4e-25
Identities = 62/392 (15%), Positives = 114/392 (29%), Gaps = 80/392 (20%)
Query: 89 IPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLK 148
I R + ++D+SL + + + L L N L + KL+
Sbjct: 2 IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61
Query: 149 QLALPMNNLTGGIPPFLGNLTSLEVVSLAGNPFGGNIPDSLGQLKELKTLGIGGNNLSGS 208
L L N L +L++L + L N L ++TL NN+S
Sbjct: 62 LLNLSSNVLY-ETLDL-ESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNIS-R 113
Query: 209 IPPSIYNLSFLVIFSVSENQMHGSLPPSLGLYFPNLKLFQTNENFFSGSIPISLSNASKL 268
+ S ++ N++ L
Sbjct: 114 VSCSR--GQGKKNIYLANNKIT-MLRDLD------------------------------- 139
Query: 269 EYVEIASNSFFGKLSVNFGGMKNLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLG 328
G + YL L+ N + + E+ A+ L+ L+L
Sbjct: 140 -----------------EGCRSRVQYLDLKLNEIDTVNFAEL-----AASSDTLEHLNLQ 177
Query: 329 GNQFRGALPHSIANLSSQLQILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSIPKE 388
N + + ++L+ L L +N+L + + + + N+ I K
Sbjct: 178 YNFIY-DVKGQVVF--AKLKTLDLSSNKL-AFMGPEFQSAAGVTWISLRNNKLV-LIEKA 232
Query: 389 MGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLGDNNLSGVIPSSLGNLERLAILEM 448
+ NL+ D GN F +L + F + + V ++ L E
Sbjct: 233 LRFSQNLEHFDLRGNGFH---------CGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEEC 283
Query: 449 FANELS--GTIPGDIFNISSLSVSLDLAENHF 478
L G + + L +H
Sbjct: 284 TVPTLGHYGAYCCEDLPAPFADRLIALGHHHH 315
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 103 bits (258), Expect = 2e-24
Identities = 57/338 (16%), Positives = 115/338 (34%), Gaps = 27/338 (7%)
Query: 69 IGNLSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLTVLVL 128
N + + + +++++ + ++ L LS N L A+L+ ++L +L L
Sbjct: 6 KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65
Query: 129 GNNKLVGSIPFEFVSLYKLKQLALPMNNLTGGIPPFLGNLTSLEVVSLAGNPFGGNIPDS 188
+N L + SL L+ L L N + L S+E + A N + S
Sbjct: 66 SSNVLY-ETL-DLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNI-SRVSCS 117
Query: 189 LGQLKELKTLGIGGNNLSGSIPPSIYNLSFLVIFSVSENQMHGSLPPSLGLYFPNLKLFQ 248
GQ K + + N ++ S + + N++ L L+
Sbjct: 118 RGQG--KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLN 175
Query: 249 TNENFFSGSIPISLSNASKLEYVEIASNSFFGKLSVNFGGMKNLSYLILEYNNLGSGESD 308
NF + +KL+ ++++SN + F ++++ L N L E
Sbjct: 176 LQYNFIY-DVK-GQVVFAKLKTLDLSSNK-LAFMGPEFQSAAGVTWISLRNNKLVLIE-- 230
Query: 309 EMGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLSSQLQILVLGTNQLYGSIPSGIGNL 368
+L L+ L GN F + + ++Q + T + +
Sbjct: 231 -----KALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVK---KLTGQNEEE 282
Query: 369 VNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFS 406
+ +L +P L + G +H
Sbjct: 283 CTVPTLGHYGAYCCEDLPAPFADRL----IALGHHHHH 316
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 101 bits (253), Expect = 1e-23
Identities = 46/288 (15%), Positives = 88/288 (30%), Gaps = 22/288 (7%)
Query: 160 GIPPFLGNLTSLEVVSLAGNPFGGNIPDSLGQLKELKTLGIGGNNLSGSIPPSIYNLSFL 219
I N ++ + + + +K L + GN LS + + L
Sbjct: 1 AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60
Query: 220 VIFSVSENQMHGSLPPSLGLYFPNLKLFQTNENFFSGSIPISLSNASKLEYVEIASNSFF 279
+ ++S N ++ L L+ N N+ L +E + A+N+
Sbjct: 61 ELLNLSSNVLY-ETLDLESL--STLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNI- 111
Query: 280 GKLSVNFGGMKNLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHS 339
V+ + + L N + S++Q L L N+
Sbjct: 112 --SRVSCSRGQGKKNIYLANNKITMLRD------LDEGCRSRVQYLDLKLNEIDTVNFAE 163
Query: 340 IANLSSQLQILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLD 399
+A S L+ L L N +Y + + L +L N+ + E + +
Sbjct: 164 LAASSDTLEHLNLQYNFIY-DVKGQV-VFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWIS 220
Query: 400 FGGNHFSGEIPSTLGNLSSLYEIFLGDNNLS-GVIPSSLGNLERLAIL 446
N I L +L L N G + +R+ +
Sbjct: 221 LRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTV 267
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 88.1 bits (219), Expect = 3e-19
Identities = 48/275 (17%), Positives = 96/275 (34%), Gaps = 17/275 (6%)
Query: 55 DLRSKALSGLLSPQIGNLSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIP 114
DL LS + + + + L +NL +N + E + L L TL L++N +
Sbjct: 40 DLSGNPLSQISAADLAPFTKLELLNLSSNVLY-ETL-DLESLSTLRTLDLNNNYV----- 92
Query: 115 ANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTGGIPPFLGNLTSLEVV 174
L + L NN + + K + L N +T G + ++ +
Sbjct: 93 QELLVGPSIETLHAANNNI-SRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYL 149
Query: 175 SLAGNPFGG-NIPDSLGQLKELKTLGIGGNNLSGSIPPSIYNLSFLVIFSVSENQMHGSL 233
L N N + L+ L + N + + + + L +S N++ +
Sbjct: 150 DLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQV-VFAKLKTLDLSSNKLA-FM 206
Query: 234 PPSLGLYFPNLKLFQTNENFFSGSIPISLSNASKLEYVEIASNSF-FGKLSVNFGGMKNL 292
P + N I +L + LE+ ++ N F G L F + +
Sbjct: 207 GPEFQ-SAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRV 264
Query: 293 SYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSL 327
+ + +G+++E + +L + L
Sbjct: 265 QTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDL 299
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 85.8 bits (213), Expect = 2e-18
Identities = 37/233 (15%), Positives = 68/233 (29%), Gaps = 24/233 (10%)
Query: 360 SIPSGIGNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSL 419
+I N + ++ ++ N++ LD GN S + L + L
Sbjct: 1 AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60
Query: 420 YEIFLGDNNLSGVIP-----------------SSLGNLERLAILEMFANELSGTIPGDIF 462
+ L N L + L + L N +S +
Sbjct: 61 ELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNIS-RVSCSRG 119
Query: 463 NISSLSVSLDLAENHFVGSIPPRIGNLKALRCFDVSNNDLSG-EIPSELGLCSSLEEIYL 521
++ LA N G ++ D+ N++ +LE + L
Sbjct: 120 --QGKK-NIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNL 176
Query: 522 AENFFNGFIPSFFRTSRGIRKVDLSRNNFFGQIPIFLEALSLEYLNLSFNDFE 574
NF ++ +DLS N P F A + +++L N
Sbjct: 177 QYNFIYDVKGQVVFAK--LKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLV 227
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 40.7 bits (96), Expect = 8e-04
Identities = 20/115 (17%), Positives = 36/115 (31%), Gaps = 6/115 (5%)
Query: 65 LSPQIGNLSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLV-GKIPANLSYCSRL 123
+ P+ + + + I+L NN + I + LE L N G + S R+
Sbjct: 206 MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRV 264
Query: 124 TVLVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTGGIP-PFLGNLTSLEVVSLA 177
+ K + + + L +P PF L +L
Sbjct: 265 QTVAKQTVK---KLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALGHHHHH 316
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 105 bits (265), Expect = 2e-24
Identities = 74/469 (15%), Positives = 157/469 (33%), Gaps = 59/469 (12%)
Query: 61 LSGLLSPQIGNLSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPANLSYC 120
+ + L+ L ++ N++I ++ +L L L+ + N++ +LS
Sbjct: 30 MQATDTISEEQLATLTSLDCHNSSIT-DMT-GIEKLTGLTKLICTSNNITT---LDLSQN 84
Query: 121 SRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTGGIPPFLGNLTSLEVVSLAGNP 180
+ LT L +NKL ++ L KL L N LT + + L ++ A N
Sbjct: 85 TNLTYLACDSNKLT-NLDVT--PLTKLTYLNCDTNKLT-KLD--VSQNPLLTYLNCARN- 137
Query: 181 FGGNIPD-SLGQLKELKTLGIGGNNLSGSIPPSIYNLSFLVIFSVSENQMHGSLPPSLGL 239
+ + + +L L N + + + L S N++ L S
Sbjct: 138 ---TLTEIDVSHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNKIT-ELDVS--- 188
Query: 240 YFPNLKLFQTNENFFSGSIPISLSNASKLEYVEIASNSFFGKLSVNFGGMKNLSYLILEY 299
L + N + + L+ +L +++ +SN ++ + L+Y
Sbjct: 189 QNKLLNRLNCDTNNITK---LDLNQNIQLTFLDCSSNKL---TEIDVTPLTQLTYFDCSV 242
Query: 300 NNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLSSQLQILVLGTNQLYG 359
N L ++ SKL L I +L+ Q++
Sbjct: 243 NPLTE---------LDVSTLSKLTTLHCIQTDL-----LEI-DLTHNTQLIYFQAEGCRK 287
Query: 360 SIPSGIGNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSL 419
+ + LY L + T + + + L L + E+ + + + L
Sbjct: 288 IKELDVTHNTQLYLLDCQAAGIT-ELD--LSQNPKLVYLYLNNTELT-ELD--VSHNTKL 341
Query: 420 YEIFLGDNNLSGVIPSSLGNLERLAILEMFANELSGTIPGDIFNISSLSVSLDLAENHFV 479
+ + ++ SS+G + L + T+P + +SL++++
Sbjct: 342 KSLSCVNAHIQDF--SSVGKIPALNNNFEAEGQTI-TMPKETLTNNSLTIAVSP------ 392
Query: 480 GSIPPRIGNLKALRCFDVSNNDLSGEIPSELGLCSSLEEIYLAENFFNG 528
+ + GN + D D + + L + + NG
Sbjct: 393 -DLLDQFGNPMNIEPGDGGVYDQATNTITWENLSTDNPAVTYTFTSENG 440
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 101 bits (253), Expect = 5e-23
Identities = 68/418 (16%), Positives = 136/418 (32%), Gaps = 51/418 (12%)
Query: 99 LETLLLSDNSLVGKIPANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLT 158
+ + + + + + LT L N+ + E L L +L NN+T
Sbjct: 20 FASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMTGIE--KLTGLTKLICTSNNIT 77
Query: 159 GGIPPFLGNLTSLEVVSLAGNPFGGNIPDSLGQLKELKTLGIGGNNLSGSIPPSIYNLSF 218
+ L T+L ++ N N+ + L +L L N L+ + S
Sbjct: 78 -TLD--LSQNTNLTYLACDSNKL-TNLD--VTPLTKLTYLNCDTNKLT-KLDVS--QNPL 128
Query: 219 LVIFSVSENQMHGSLPPSLGLYFPNLKLFQTNENFFSGSIPISLSNASKLEYVEIASNSF 278
L + + N + + S + L + N + + + ++L ++ + N
Sbjct: 129 LTYLNCARNTLT-EIDVS---HNTQLTELDCHLNKKITKLDV--TPQTQLTTLDCSFNKI 182
Query: 279 FGKLSVNFGGMKNLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGALPH 338
++ K L+ L + NN+ + L +L L N+
Sbjct: 183 ---TELDVSQNKLLNRLNCDTNNITKLD---------LNQNIQLTFLDCSSNKLTEI--- 227
Query: 339 SIANLSSQLQILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGL 398
+ L+ L N L + + L L +L + I + L
Sbjct: 228 DVTPLTQ-LTYFDCSVNPL-TELD--VSTLSKLTTLHCIQTDLL-EID--LTHNTQLIYF 280
Query: 399 DFGGNHFSGEIPSTLGNLSSLYEIFLGDNNLSGVIPSSLGNLERLAILEMFANELSGTIP 458
G E+ + + + LY + ++ + L +L L + EL+ +
Sbjct: 281 QAEGCRKIKELD--VTHNTQLYLLDCQAAGITEL---DLSQNPKLVYLYLNNTELT-EL- 333
Query: 459 GDIFNISSLSVSLDLAENHFVGSIPPRIGNLKALRCFDVSNNDLSGEIPSELGLCSSL 516
D+ + + L SL H +G + AL + +P E +SL
Sbjct: 334 -DVSHNTKLK-SLSCVNAHIQ-DFSS-VGKIPALNNNFEAEGQTI-TMPKETLTNNSL 386
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 99.0 bits (247), Expect = 3e-22
Identities = 61/386 (15%), Positives = 125/386 (32%), Gaps = 49/386 (12%)
Query: 55 DLRSKALSGLLSPQIGNLSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIP 114
D + +++ + I L+ L ++ +N I L+ + L L N L
Sbjct: 48 DCHNSSITDM--TGIEKLTGLTKLICTSNNITT---LDLSQNTNLTYLACDSNKLTNL-- 100
Query: 115 ANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTGGIPPFLGNLTSLEVV 174
+++ ++LT L NKL + L L N LT I + + T L +
Sbjct: 101 -DVTPLTKLTYLNCDTNKL---TKLDVSQNPLLTYLNCARNTLT-EID--VSHNTQLTEL 153
Query: 175 SLAGNPFGGNIPDSLGQLKELKTLGIGGNNLSGSIPPSIYNLSFLVIFSVSENQMHGSLP 234
N + + +L TL N ++ + S L + N + L
Sbjct: 154 DCHLNKKITKLD--VTPQTQLTTLDCSFNKIT-ELDVS--QNKLLNRLNCDTNNIT-KLD 207
Query: 235 PSLGLYFPNLKLFQTNENFFSGSIPISLSNASKLEYVEIASNSFFGKLSVNFGGMKNLSY 294
+ L + N + I ++ ++L Y + + N ++ + L+
Sbjct: 208 LN---QNIQLTFLDCSSNKLTE---IDVTPLTQLTYFDCSVNPL---TELDVSTLSKLTT 258
Query: 295 LILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLSSQLQILVLGT 354
L +L L + ++L G + L + + + L +L
Sbjct: 259 LHCIQTDLLE---------IDLTHNTQLIYFQAEGCRKIKELD--VTHNTQ-LYLLDCQA 306
Query: 355 NQLYGSIPSGIGNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLG 414
+ + + L L + T + + L+ L H + S +G
Sbjct: 307 AGI-TELD--LSQNPKLVYLYLNNTELT-ELD--VSHNTKLKSLSCVNAHIQ-DFSS-VG 358
Query: 415 NLSSLYEIFLGDNNLSGVIPSSLGNL 440
+ +L F + + +L N
Sbjct: 359 KIPALNNNFEAEGQTITMPKETLTNN 384
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 88.2 bits (219), Expect = 1e-18
Identities = 61/401 (15%), Positives = 123/401 (30%), Gaps = 49/401 (12%)
Query: 171 LEVVSLAGNPFGGNIPDSLGQLKELKTLGIGGNNLSGSIPPSIYNLSFLVIFSVSENQMH 230
A S QL L +L ++++ + I L+ L + N +
Sbjct: 20 FASEVAAAFEMQATDTISEEQLATLTSLDCHNSSIT-DMTG-IEKLTGLTKLICTSNNI- 76
Query: 231 GSLPPSLGLYFPNLKLFQTNENFFSGSIPISLSNASKLEYVEIASNSFFGKLSVNFGGMK 290
+L S NL + N + + ++ +KL Y+ +N ++
Sbjct: 77 TTLDLSQ---NTNLTYLACDSNKLTN---LDVTPLTKLTYLNCDTNKL---TKLDVSQNP 127
Query: 291 NLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLSSQLQIL 350
L+YL N L +++ ++L L N+ L + + QL L
Sbjct: 128 LLTYLNCARNTLTE---------IDVSHNTQLTELDCHLNKKITKLD--VTPQT-QLTTL 175
Query: 351 VLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIP 410
N++ + + L L + N T + + + + L LD N + EI
Sbjct: 176 DCSFNKIT-ELD--VSQNKLLNRLNCDTNNIT-KLD--LNQNIQLTFLDCSSNKLT-EID 228
Query: 411 STLGNLSSLYEIFLGDNNLSGVIPSSLGNLERLAILEMFANELSGTIPGDIFNISSLSVS 470
+ L+ L N L+ + S+L L L +L +++ +
Sbjct: 229 --VTPLTQLTYFDCSVNPLTELDVSTLSKLTT---LHCIQTDLL------EIDLTHNTQL 277
Query: 471 LDLAENHFVGSIPPRIGNLKALRCFDVSNNDLSGEIPSELGLCSSLEEIYLAENFFNGFI 530
+ + + L D ++ E+ L L +YL
Sbjct: 278 IYFQAEGCRKIKELDVTHNTQLYLLDCQAAGIT-ELD--LSQNPKLVYLYLNNTELTELD 334
Query: 531 PSFFRTSRGIRKVDLSRNNFFGQIPIFLEALSLEYLNLSFN 571
S ++ + N + +L +
Sbjct: 335 VSHN---TKLKSLSCV-NAHIQDFSSVGKIPALNNNFEAEG 371
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 77.0 bits (190), Expect = 4e-15
Identities = 56/347 (16%), Positives = 107/347 (30%), Gaps = 42/347 (12%)
Query: 227 NQMHGSLPPSLGLYFP--NLKLFQTNENFFSGSIPISLSNASKLEYVEIASNSFFGKLSV 284
N + S +FP N + IS + L ++ ++S ++
Sbjct: 1 NTLKAGQTQSFNDWFPDDNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSS-ITDMT- 58
Query: 285 NFGGMKNLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLS 344
+ L+ LI NN+ + + L+ + L L+ N+ + L+
Sbjct: 59 GIEKLTGLTKLICTSNNITTLD---------LSQNTNLTYLACDSNKLTN---LDVTPLT 106
Query: 345 SQLQILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNH 404
L L TN+L + + L L N T I + L LD N
Sbjct: 107 K-LTYLNCDTNKL-TKLD--VSQNPLLTYLNCARNTLT-EID--VSHNTQLTELDCHLNK 159
Query: 405 FSGEIPSTLGNLSSLYEIFLGDNNLSGVIPSSLGNLERLAILEMFANELSGTIPGDIFNI 464
++ + + L + N ++ + + + L L N ++ D+
Sbjct: 160 KITKLD--VTPQTQLTTLDCSFNKITEL---DVSQNKLLNRLNCDTNNITKL---DLNQN 211
Query: 465 SSLSVSLDLAENHFVGSIPPRIGNLKALRCFDVSNNDLSGEIPSELGLCSSLEEIYLAEN 524
L+ LD + N I + L L FD S N L+ E+ + S L ++ +
Sbjct: 212 IQLT-FLDCSSNKLT-EID--VTPLTQLTYFDCSVNPLT-ELD--VSTLSKLTTLHCIQT 264
Query: 525 FFNGFIPSFFRTSRGIRKVDLSRNNFFGQIPIFLEALSLEYLNLSFN 571
+ + + L L+
Sbjct: 265 DLLEIDLTHNTQ---LIYFQAEGCRKI-KELDVTHNTQLYLLDCQAA 307
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 100 bits (251), Expect = 2e-22
Identities = 51/253 (20%), Positives = 91/253 (35%), Gaps = 35/253 (13%)
Query: 289 MKNLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLSSQLQ 348
+ S L L NL S D + ++ VL + N +LP A+L +
Sbjct: 58 INQFSELQLNRLNLSS-LPDNLP--------PQITVLEITQNALI-SLPELPASL----E 103
Query: 349 ILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGE 408
L N+L ++P +L +L + NQ T +P+ L+ ++ N +
Sbjct: 104 YLDACDNRL-STLPELPASLKHLD---VDNNQLT-MLPELPA---LLEYINADNNQLT-M 154
Query: 409 IPSTLGNLSSLYEIFLGDNNLSGVIPSSLGNLERLAILEMFANELSGTIPGDIFNISSLS 468
+P +L L + +N L+ +P +LE L + N L ++P
Sbjct: 155 LPELPTSLEVLS---VRNNQLT-FLPELPESLEALDVST---NLLE-SLPAVPVRNHHSE 206
Query: 469 ---VSLDLAENHFVGSIPPRIGNLKALRCFDVSNNDLSGEIPSELGLCSSLEEIYLAENF 525
+ EN IP I +L + +N LS I L ++ + + +
Sbjct: 207 ETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIY 265
Query: 526 FNGFIPSFFRTSR 538
F+ R
Sbjct: 266 FSMSDGQQNTLHR 278
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 90.4 bits (224), Expect = 4e-19
Identities = 61/431 (14%), Positives = 115/431 (26%), Gaps = 92/431 (21%)
Query: 68 QIGNLSFLREINLMNN--TIQGEIPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLTV 125
I N L + + N + + + + + N V + L ++ +
Sbjct: 6 PINNNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECL--INQFSE 63
Query: 126 LVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTGGIPPFLGNLTSLEVVSLAGNPFGGNI 185
L L L S+P ++ L + N L +P +L L+ N +
Sbjct: 64 LQLNRLNLS-SLPDNLPP--QITVLEITQNALIS-LPELPASLEYLD---ACDNRLS-TL 115
Query: 186 PDSLGQLKELKTLGIGGNNLSGSIPPSIYNLSFLVIFSVSENQMHGSLPPSLGLYFPNLK 245
P+ LK L + N L+ +P L ++ + NQ+ LP
Sbjct: 116 PELPASLKHLD---VDNNQLT-MLPELPALLEYI---NADNNQLT-MLPELPT------- 160
Query: 246 LFQTNENFFSGSIPISLSNASKLEYVEIASNSFFGKLSVNFGGMKNLSYLILEYNNLGSG 305
+L L + N L
Sbjct: 161 ---------------------------------------------SLEVLSVRNNQLTF- 174
Query: 306 ESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIA---NLSSQLQILVLGTNQLYGSIP 362
+ L+ L + N +LP + N++ IP
Sbjct: 175 ------LPELPES---LEALDVSTNLLE-SLPAVPVRNHHSEETEIFFRCRENRI-THIP 223
Query: 363 SGIGNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEI 422
I +L ++ E+N + I + + + +FS L +
Sbjct: 224 ENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADA 283
Query: 423 FLGDNNLSGVIPSSLGNLERLAILEMFANELSGTIPGDIFNISSLSVSLDLAENHFVGSI 482
S + + E AN S + + S + E V +
Sbjct: 284 VT--AWFPENKQSDVSQIWHAFEHEEHANTFS-AFLDRLSDTVSARNTSGFREQ--VAAW 338
Query: 483 PPRIGNLKALR 493
++ LR
Sbjct: 339 LEKLSASAELR 349
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 70.4 bits (172), Expect = 7e-13
Identities = 46/237 (19%), Positives = 75/237 (31%), Gaps = 50/237 (21%)
Query: 336 LPHSIANLSSQLQILVLGT-NQLYGSIPSGIGNLVNLYSLQTEENQFTGSIPKEMGKLLN 394
+ I N S Q T + Y S N+ + + +
Sbjct: 3 IMLPINNNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKE--CLINQ 60
Query: 395 LQGLDFGGNHFSGEIPSTLGNLSSLYEIFLGDNNLSGVIPSSLGNLERLAILEMFANELS 454
L + S +P L + + + N L +P +LE L + N LS
Sbjct: 61 FSELQLNRLNLS-SLPDNLP--PQITVLEITQNALI-SLPELPASLEYLDACD---NRLS 113
Query: 455 GTIPGDIFNISSLSVSLDLAENHFVGSIPPRIGNLKALRCFDVSNNDLSGEIPSELGLCS 514
T+P ++ LD+ N +P L+ + + NN L+ +P
Sbjct: 114 -TLPELPASL----KHLDVDNNQLT-MLPELPALLEYI---NADNNQLT-MLPELPT--- 160
Query: 515 SLEEIYLAENFFNGFIPSFFRTSRGIRKVDLSRNNFFGQIPIFLEALSLEYLNLSFN 571
SLE + + RNN +P E SLE L++S N
Sbjct: 161 SLEVLSV-------------------------RNNQLTFLPELPE--SLEALDVSTN 190
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 70.0 bits (171), Expect = 1e-12
Identities = 52/329 (15%), Positives = 98/329 (29%), Gaps = 47/329 (14%)
Query: 65 LSPQIGNLSFLREINLMNNTIQGEIPLEFGRLRRL-----------------ETLLLSDN 107
L +L +L + +N + +P L+ L E + +N
Sbjct: 95 LPELPASLEYL---DACDNRLS-TLPELPASLKHLDVDNNQLTMLPELPALLEYINADNN 150
Query: 108 SLVGKIPANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTGGIPPFLGN 167
L +P + L VL + NN+L +P L+ L + N L +P
Sbjct: 151 QLT-MLPELPT---SLEVLSVRNNQL-TFLP---ELPESLEALDVSTNLLES-LPAVPVR 201
Query: 168 LTSLE----VVSLAGNPFGGNIPDSLGQLKELKTLGIGGNNLSGSIPPSIYNLSFLVIFS 223
E N +IP+++ L T+ + N LS I S+ + +
Sbjct: 202 NHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYH 260
Query: 224 VSENQMHGSLPPSLGLYFPNLKLFQTNENFFSGSIPISLSNASKLEYVEIASNSFFGKLS 283
+ L +F + +S E +N+F L
Sbjct: 261 GPRIYFS---MSDGQQNTLHRPLADAVTAWFPENKQSDVSQIWHAFEHEEHANTFSAFLD 317
Query: 284 VNFGGMKNLSYLILEYNNLGSGESDEMGFMNSLANCSKL-QVLSLGGNQFRGALPHSIAN 342
+ N ++ L+ ++L Q + +A
Sbjct: 318 RL--------SDTVSARNTSGFREQVAAWLEKLSASAELRQQSFAVAADATESCEDRVAL 369
Query: 343 LSSQLQILVLGTNQLYGSIPSGIGNLVNL 371
+ L+ +L G + G L++L
Sbjct: 370 TWNNLRKTLLVHQASEGLFDNDTGALLSL 398
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 92.1 bits (229), Expect = 2e-20
Identities = 50/272 (18%), Positives = 95/272 (34%), Gaps = 23/272 (8%)
Query: 291 NLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLSSQLQIL 350
+ L L N + + + L C LQ L L N S ++L L+ L
Sbjct: 53 AVKSLDLSNNRITYISN------SDLQRCVNLQALVLTSNGINTIEEDSFSSLG-SLEHL 105
Query: 351 VLGTNQLYGSIPSGI-GNLVNLYSLQTEENQFTGSIPKEM--GKLLNLQGLDFGGNHFSG 407
L N L ++ S L +L L N + ++ + L LQ L G
Sbjct: 106 DLSYNYL-SNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFT 163
Query: 408 EIPS-TLGNLSSLYEIFLGDNNLSGVIPSSLGNLERLAILEMFANELSGTIPGDIFNISS 466
+I L+ L E+ + ++L P SL +++ ++ L + + + +++S
Sbjct: 164 KIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTS 222
Query: 467 LSVSLDLAENHFVGSIPPRI--------GNLKALRCFDVSNNDLSGEIPSELGLCSSLEE 518
L+L + + R +++ L ++ L S L E
Sbjct: 223 SVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLE 281
Query: 519 IYLAENFFNGFIPSFFRTSRGIRKVDLSRNNF 550
+ + N F ++K+ L N +
Sbjct: 282 LEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPW 313
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 87.5 bits (217), Expect = 7e-19
Identities = 64/320 (20%), Positives = 113/320 (35%), Gaps = 46/320 (14%)
Query: 120 CSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTGGIPPFLGNLTSLEVVSLAGN 179
C R + + L SIP +K L L N +T L +L+ + L N
Sbjct: 30 CDRNGICKGSSGSL-NSIPSGLTE--AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSN 86
Query: 180 PFGGNIPDSLGQLKELKTLGIGGNNLSGSIPPSIY-NLSFLVIFSVSENQMHGSLPPSLG 238
DS L L+ L + N LS ++ S + LS L ++ N +L +
Sbjct: 87 GINTIEEDSFSSLGSLEHLDLSYNYLS-NLSSSWFKPLSSLTFLNLLGNPYK-TLGET-- 142
Query: 239 LYFPNLKLFQTNENFFSGSIPISLSNASKLEYVEIASNSFFGKLSVN-FGGMKNLSYLIL 297
+ FS +KL+ + + + F K+ F G+ L L +
Sbjct: 143 -------------SLFSHL--------TKLQILRVGNMDTFTKIQRKDFAGLTFLEELEI 181
Query: 298 EYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLSSQLQILVLGTNQL 357
+ ++L S E SL + + L L Q L +++S ++ L L L
Sbjct: 182 DASDLQSYEP------KSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDL 234
Query: 358 YG----SIPSGI----GNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEI 409
+ +G +++ + + K + ++ L L+F N
Sbjct: 235 DTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLKSVP 293
Query: 410 PSTLGNLSSLYEIFLGDNNL 429
L+SL +I+L N
Sbjct: 294 DGIFDRLTSLQKIWLHTNPW 313
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 82.5 bits (204), Expect = 4e-17
Identities = 41/248 (16%), Positives = 84/248 (33%), Gaps = 17/248 (6%)
Query: 286 FGGMKNLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLSS 345
NL L+L N + + E +S ++ L+ L L N LSS
Sbjct: 72 LQRCVNLQALVLTSNGINTIEE------DSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSS 125
Query: 346 QLQILVLGTNQLYGSIPSGI-GNLVNLYSLQTEENQFTGSIPKEM-GKLLNLQGLDFGGN 403
L L L N + + +L L L+ I ++ L L+ L+ +
Sbjct: 126 -LTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDAS 184
Query: 404 HFSGEIPSTLGNLSSLYEIFLGDNNLSGVIPSSLGNLERLAILEMFANELSGTIPGDIFN 463
P +L ++ ++ + L ++ + + LE+ +L ++
Sbjct: 185 DLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELST 244
Query: 464 ISSLSVS-------LDLAENHFVGSIPPRIGNLKALRCFDVSNNDLSGEIPSELGLCSSL 516
+ S+ + + + + + + L + S N L +SL
Sbjct: 245 GETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSL 303
Query: 517 EEIYLAEN 524
++I+L N
Sbjct: 304 QKIWLHTN 311
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 81.3 bits (201), Expect = 8e-17
Identities = 59/295 (20%), Positives = 98/295 (33%), Gaps = 29/295 (9%)
Query: 53 TCDLRSKALSGLLSPQIGNLSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGK 112
C S +L+ + P G ++ ++L NN I + R L+ L+L+ N +
Sbjct: 35 ICKGSSGSLNSI--PS-GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-T 90
Query: 113 IPANL-SYCSRLTVLVLGNNKLVGSIPFE-FVSLYKLKQLALPMNNLTGGIPP--FLGNL 168
I + S L L L N L ++ F L L L L N + +L
Sbjct: 91 IEEDSFSSLGSLEHLDLSYNYLS-NLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHL 148
Query: 169 TSLEVVSLAGNPFGGNIPD-SLGQLKELKTLGIGGNNLSGSIPP-SIYNLSFLVIFSVSE 226
T L+++ + I L L+ L I ++L S P S+ ++ + +
Sbjct: 149 TKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQ-SYEPKSLKSIQNVSHLILHM 207
Query: 227 NQMHGSLPPSL--------GLYFPNLKLFQTNENFFSGSIPISLSNASKLEYVEIASNSF 278
Q L L + L + + S SL V+I S
Sbjct: 208 KQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESL 266
Query: 279 FGKLSVNFGGMKNLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFR 333
F ++ + L L N L S + LQ + L N +
Sbjct: 267 F-QVMKLLNQISGLLELEFSRNQLKSVPDG------IFDRLTSLQKIWLHTNPWD 314
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 90.1 bits (224), Expect = 8e-20
Identities = 56/296 (18%), Positives = 104/296 (35%), Gaps = 32/296 (10%)
Query: 290 KNLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLSSQLQI 349
+ + L L+ N + + N L L L N+ P + A L L+
Sbjct: 52 PDTALLDLQNNKITEIKD------GDFKNLKNLHTLILINNKISKISPGAFAPLVK-LER 104
Query: 350 LVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSIPKEM-GKLLNLQGLDFGGNHFSGE 408
L L NQL +P + L L+ EN+ T + K + L + ++ G N
Sbjct: 105 LYLSKNQLK-ELPEKM--PKTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSS 160
Query: 409 I--PSTLGNLSSLYEIFLGDNNLSGVIPSSLGNLERLAILEMFANELSGTIPGDIF-NIS 465
+ L I + D N++ + +L L + N+++ + ++
Sbjct: 161 GIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTEL---HLDGNKIT-KVDAASLKGLN 216
Query: 466 SLSVSLDLAENHFVGSIPPRI-GNLKALRCFDVSNNDLSGEIPSELGLCSSLEEIYLAEN 524
+L+ L L+ N + ++ N LR ++NN L ++P L ++ +YL N
Sbjct: 217 NLA-KLGLSFNS-ISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNN 273
Query: 525 FFNGFIPSFFRTS------RGIRKVDLSRNNF-FGQIP--IFLEALSLEYLNLSFN 571
+ + F V L N + +I F + L
Sbjct: 274 NISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 85.8 bits (213), Expect = 2e-18
Identities = 74/339 (21%), Positives = 125/339 (36%), Gaps = 52/339 (15%)
Query: 99 LETLLLSDNSLVGKIPANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLT 158
L + SD L K+P +L +L L NNK+ +F +L L L L N ++
Sbjct: 33 LRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS 89
Query: 159 GGIPPFLGNLTSLEVVSLAGNPFGGNIPDSLGQLKELKTLGIGGNNLSGSIPPSI-YNLS 217
P L LE + L+ N +P+ + K L+ L + N ++ + S+ L+
Sbjct: 90 KISPGAFAPLVKLERLYLSKNQL-KELPEKM--PKTLQELRVHENEIT-KVRKSVFNGLN 145
Query: 218 FLVIFSVSENQMHGSLPPSLGLYFPNLKLFQTNENFFSGSIPISLSNASKLEYVEIASNS 277
+++ + N LK F G KL Y+ IA +
Sbjct: 146 QMIVVELGTNP---------------LKSSGIENGAFQGM--------KKLSYIRIADTN 182
Query: 278 FFGKLSVNFGGMKNLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGALP 337
++ G +L+ L L+ N + ++ SL + L L L N
Sbjct: 183 I---TTIPQGLPPSLTELHLDGNKITKVDA------ASLKGLNNLAKLGLSFNSISAVDN 233
Query: 338 HSIANLSSQLQILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSIPKEM-------G 390
S+AN L+ L L N+L +P G+ + + + N + +I
Sbjct: 234 GSLANTPH-LRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS-AIGSNDFCPPGYNT 290
Query: 391 KLLNLQGLDFGGNHFS-GEI-PSTLGNLSSLYEIFLGDN 427
K + G+ N EI PST + + LG+
Sbjct: 291 KKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 84.3 bits (209), Expect = 6e-18
Identities = 58/287 (20%), Positives = 108/287 (37%), Gaps = 17/287 (5%)
Query: 75 LREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPAN-LSYCSRLTVLVLGNNKL 133
++L NN I +F L+ L TL+L +N + KI + +L L L N+L
Sbjct: 54 TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS-KISPGAFAPLVKLERLYLSKNQL 112
Query: 134 VGSIPFEFVSLYKLKQLALPMNNLTGGIPPF-LGNLTSLEVVSLAGNPFGGNI--PDSLG 190
+P + L++L + N +T + L + VV L NP + +
Sbjct: 113 K-ELPEKM--PKTLQELRVHENEITK-VRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQ 168
Query: 191 QLKELKTLGIGGNNLSGSIPPSIYNLSFLVIFSVSENQMHGSLPPSLGLYFPNLKLFQTN 250
+K+L + I N++ +IP + L + N++ + + NL +
Sbjct: 169 GMKKLSYIRIADTNIT-TIPQGL--PPSLTELHLDGNKIT-KVDAASLKGLNNLAKLGLS 224
Query: 251 ENFFSGSIPISLSNASKLEYVEIASNSFFGKLSVNFGGMKNLSYLILEYNNLGSGESDEM 310
N S SL+N L + + +N K+ K + + L NN+ + S++
Sbjct: 225 FNSISAVDNGSLANTPHLRELHLNNNKL-VKVPGGLADHKYIQVVYLHNNNISAIGSNDF 283
Query: 311 GFMNSLANCSKLQVLSLGGNQFRGAL--PHSIANLSSQLQILVLGTN 355
+ +SL N + P + + + LG
Sbjct: 284 CPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYV-RAAVQLGNY 329
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 81.6 bits (202), Expect = 6e-17
Identities = 62/305 (20%), Positives = 109/305 (35%), Gaps = 32/305 (10%)
Query: 232 SLPPSLGLYFPNLKLFQTNENFFSGSIPISLSNASKLEYVEIASNSFFGKLSVN-FGGMK 290
+P L P+ L N + N L + + +N K+S F +
Sbjct: 45 KVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKI-SKISPGAFAPLV 100
Query: 291 NLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLSSQLQIL 350
L L L N L LQ L + N+ L+ + ++
Sbjct: 101 KLERLYLSKNQLKELPE------KMPKT---LQELRVHENEITKVRKSVFNGLNQ-MIVV 150
Query: 351 VLGTNQLYGS-IPSGI-GNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGE 408
LGTN L S I +G + L ++ + T +IP+ + +L L GN + +
Sbjct: 151 ELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGL--PPSLTELHLDGNKIT-K 206
Query: 409 IPS-TLGNLSSLYEIFLGDNNLSGVIPSSLGNLERLAILEMFANELSGTIPGDIFNISSL 467
+ + +L L++L ++ L N++S V SL N L L + N+L +PG + + +
Sbjct: 207 VDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYI 265
Query: 468 SVSLDLAENHF----VGSIPPRIG--NLKALRCFDVSNNDLS-GEIPSELGLC-SSLEEI 519
V + L N+ P + + +N + EI C +
Sbjct: 266 QV-VYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAV 324
Query: 520 YLAEN 524
L
Sbjct: 325 QLGNY 329
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 68.5 bits (168), Expect = 9e-13
Identities = 43/217 (19%), Positives = 81/217 (37%), Gaps = 16/217 (7%)
Query: 360 SIPSGIGNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSL 419
+P + + L + N+ T + L NL L N S P L L
Sbjct: 45 KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKL 102
Query: 420 YEIFLGDNNLSGVIPSSLGNLERLAILEMFANELSGTIPGDIF-NISSLSVSLDLAENHF 478
++L N L + L+ L + NE++ + +F ++ + + ++L N
Sbjct: 103 ERLYLSKNQLKELPEKMPKTLQELRV---HENEIT-KVRKSVFNGLNQM-IVVELGTNPL 157
Query: 479 -VGSIPPRI-GNLKALRCFDVSNNDLSGEIPSELGLCSSLEEIYLAENFFNGFIPSFFRT 536
I +K L +++ +++ IP GL SL E++L N + +
Sbjct: 158 KSSGIENGAFQGMKKLSYIRIADTNIT-TIPQ--GLPPSLTELHLDGNKITKVDAASLKG 214
Query: 537 SRGIRKVDLSRNNFFGQIP--IFLEALSLEYLNLSFN 571
+ K+ LS N+ + L L+L+ N
Sbjct: 215 LNNLAKLGLSFNS-ISAVDNGSLANTPHLRELHLNNN 250
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 91.0 bits (226), Expect = 1e-19
Identities = 61/248 (24%), Positives = 100/248 (40%), Gaps = 18/248 (7%)
Query: 232 SLPPSLGLYFPNLKLFQTNENFFSGSIPISLSNASKLEYVEIASNSFFGKLSVN-FGGMK 290
+P + N + EN + + LE +++ NS ++ V F G+
Sbjct: 68 EVPQGI---PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSI-RQIEVGAFNGLA 123
Query: 291 NLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLSSQLQIL 350
+L+ L L N L S + SKL+ L L N ++ + L L
Sbjct: 124 SLNTLELFDNWLTVIPSG------AFEYLSKLRELWLRNNPIESIPSYAFNRVP-SLMRL 176
Query: 351 VLG-TNQLYGSIPSGI-GNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGE 408
LG +L I G L NL L +P + L+ L+ L+ GNHF
Sbjct: 177 DLGELKKL-EYISEGAFEGLFNLKYLNLGMCNIK-DMP-NLTPLVGLEELEMSGNHFPEI 233
Query: 409 IPSTLGNLSSLYEIFLGDNNLSGVIPSSLGNLERLAILEMFANELSGTIPGDIFNISSLS 468
P + LSSL ++++ ++ +S + ++ L L L + N LS ++P D+F
Sbjct: 234 RPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS-SLPHDLFTPLRYL 292
Query: 469 VSLDLAEN 476
V L L N
Sbjct: 293 VELHLHHN 300
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 81.7 bits (202), Expect = 1e-16
Identities = 70/334 (20%), Positives = 106/334 (31%), Gaps = 86/334 (25%)
Query: 97 RRLETLLLSDNSLVGKIPANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPMNN 156
+ ++ + L ++P + S L L N + F L+ L+ L L N+
Sbjct: 54 NQFSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNS 110
Query: 157 LTGGIPPFLGNLTSLEVVSLAGNPFGGNIPDSLGQLKELKTLGIGGNNLSGSIPPSI-YN 215
+ +E + L L TL + N L+ IP
Sbjct: 111 IR-----------QIE-------------VGAFNGLASLNTLELFDNWLT-VIPSGAFEY 145
Query: 216 LSFLVIFSVSENQMHGSLPPSLGLYFPNLKLFQTNENFFSGSIPISLSNASKLEYVEIAS 275
LS L + N + S+P P+L + L KLEY+ +
Sbjct: 146 LSKLRELWLRNNPIE-SIPSYAFNRVPSLMR-------------LDLGELKKLEYISEGA 191
Query: 276 NSFFGKLSVNFGGMKNLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGA 335
F G+ NL YL L N+ M +L L+ L + GN F
Sbjct: 192 ----------FEGLFNLKYLNLGMCNIKD--------MPNLTPLVGLEELEMSGNHFPEI 233
Query: 336 LPHSIANLSSQLQILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSIPKEMGKLLNL 395
P S LSS L+ L + +Q+ I F G L +L
Sbjct: 234 RPGSFHGLSS-LKKLWVMNSQV-SLIERNA---------------FDG--------LASL 268
Query: 396 QGLDFGGNHFSGEIPSTLGNLSSLYEIFLGDNNL 429
L+ N+ S L L E+ L N
Sbjct: 269 VELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPW 302
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 81.7 bits (202), Expect = 1e-16
Identities = 71/316 (22%), Positives = 105/316 (33%), Gaps = 70/316 (22%)
Query: 47 CEWEGITCDLRSKALSGLLSPQIGNL-SFLREINLMNNTIQGEIPLEFGRLRRLETLLLS 105
C + + LS + PQ + S R +NLM N IQ F L LE L L
Sbjct: 52 CSNQFSKVVCTRRGLSEV--PQ--GIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLG 107
Query: 106 DNSLVGKIPAN-LSYCSRLTVLVLGNNKLVGSIPFE-FVSLYKLKQLALPMNNLTGGIPP 163
NS+ +I + + L L L +N L IP F L KL++L L N + IP
Sbjct: 108 RNSI-RQIEVGAFNGLASLNTLELFDNWLT-VIPSGAFEYLSKLRELWLRNNPIE-SIPS 164
Query: 164 F-LGNLTSLEVVSLAGNPFGGNIP-DSLGQLKELKTLGIGGNNLSGSIPPSIYNLSFLVI 221
+ + SL + L I + L LK L +G N+ + P++ L L
Sbjct: 165 YAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DM-PNLTPLVGLEE 222
Query: 222 FSVSENQMHGSLPPSLGLYFPNLKLFQTNENFFSGSIPISLSNASKLEYVEIASNSFFGK 281
+S N + P
Sbjct: 223 LEMSGNHFP-EIRPGS-------------------------------------------- 237
Query: 282 LSVNFGGMKNLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIA 341
F G+ +L L + + + E N+ + L L+L N +LPH +
Sbjct: 238 ----FHGLSSLKKLWVMNSQVSLIER------NAFDGLASLVELNLAHNNLS-SLPHDLF 286
Query: 342 NLSSQLQILVLGTNQL 357
L L L N
Sbjct: 287 TPLRYLVELHLHHNPW 302
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 80.2 bits (198), Expect = 4e-16
Identities = 53/260 (20%), Positives = 100/260 (38%), Gaps = 21/260 (8%)
Query: 320 SKLQVLSLGGNQFRGALPHSIANLSSQLQILVLGTNQLYGSIPSGI-GNLVNLYSLQTEE 378
++ + +P + S + L L N + I + +L +L LQ
Sbjct: 54 NQFSKVVCTRRGLS-EVP---QGIPSNTRYLNLMENNI-QMIQADTFRHLHHLEVLQLGR 108
Query: 379 NQFTGSIPKEM-GKLLNLQGLDFGGNHFSGEIPS-TLGNLSSLYEIFLGDNNLSGVIPSS 436
N I L +L L+ N + IPS LS L E++L +N + + +
Sbjct: 109 NSIR-QIEVGAFNGLASLNTLELFDNWLT-VIPSGAFEYLSKLRELWLRNNPIESIPSYA 166
Query: 437 LGNLERLAILEMFANELSGTIPGDIF-NISSLSVSLDLAENHFVGSIPPRIGNLKALRCF 495
+ L L++ + I F + +L L+L + P + L L
Sbjct: 167 FNRVPSLMRLDLGELKKLEYISEGAFEGLFNLK-YLNLGMCNI--KDMPNLTPLVGLEEL 223
Query: 496 DVSNNDLSGEIPSEL--GLCSSLEEIYLAENFFNGFIPSFFRTSRGIRKVDLSRNNFFGQ 553
++S N EI GL SSL+++++ + + + F + +++L+ +N
Sbjct: 224 EMSGNHFP-EIRPGSFHGL-SSLKKLWVMNSQVSLIERNAFDGLASLVELNLA-HNNLSS 280
Query: 554 IP--IFLEALSLEYLNLSFN 571
+P +F L L+L N
Sbjct: 281 LPHDLFTPLRYLVELHLHHN 300
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 64.4 bits (157), Expect = 4e-11
Identities = 43/196 (21%), Positives = 65/196 (33%), Gaps = 35/196 (17%)
Query: 394 NLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLGDNNLSGVIPSSLGNLERLAILEMFANEL 453
N + L+ N+ T +L L + LG N++ + + L L LE+F N L
Sbjct: 76 NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWL 135
Query: 454 SGTIPGDIF-NISSLSVSLDLAENHFVGSIPPRI-GNLKALRCFDVSNNDLSGEIPSEL- 510
+ IP F +S L L L N SIP + +L D+ I
Sbjct: 136 T-VIPSGAFEYLSKL-RELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAF 192
Query: 511 -GLCSSLEEIYLAENFFNGFIPSFFRTSRGIRKVDLSRNNFFGQIPIFLEALSLEYLNLS 569
GL +L+ + L +P + LE L +S
Sbjct: 193 EGL-FNLKYLNLG-------------------------MCNIKDMPNLTPLVGLEELEMS 226
Query: 570 FNDFEGRLPTRGIFAN 585
N F + G F
Sbjct: 227 GNHFP-EIR-PGSFHG 240
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 86.6 bits (215), Expect = 7e-19
Identities = 52/253 (20%), Positives = 93/253 (36%), Gaps = 19/253 (7%)
Query: 232 SLPPSLGLYFPNLKLFQTNENFFSGSIPISLSNASKLEYVEIASN--SFFGKLSVNFGGM 289
S+P + + + N ++L + ++SN SF G S + G
Sbjct: 21 SVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGT 77
Query: 290 KNLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSI-ANLSSQLQ 348
+L YL L +N + + S+ +L+ L + + S+ +L + L
Sbjct: 78 TSLKYLDLSFNGVITMSSN-------FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN-LI 129
Query: 349 ILVLGTNQLYGSIPSGI-GNLVNLYSLQTEENQFTGSIPKEM-GKLLNLQGLDFGGNHFS 406
L + +GI L +L L+ N F + ++ +L NL LD
Sbjct: 130 YLDISHTHT-RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 188
Query: 407 GEIPSTLGNLSSLYEIFLGDNNLSGVIPSSLGNLERLAILEMFANELSGTIPGDIF-NIS 465
P+ +LSSL + + NN + L L +L+ N + T +
Sbjct: 189 QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM-TSKKQELQHFP 247
Query: 466 SLSVSLDLAENHF 478
S L+L +N F
Sbjct: 248 SSLAFLNLTQNDF 260
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 85.1 bits (211), Expect = 2e-18
Identities = 61/248 (24%), Positives = 97/248 (39%), Gaps = 26/248 (10%)
Query: 341 ANLSSQLQILVLGTNQLYGSIPSGI-GNLVNLYSLQTEENQFT--GSIPKEMGKLLNLQG 397
+ S L L +N+L S+P G+ L L L N + G + +L+
Sbjct: 24 TGIPSSATRLELESNKL-QSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKY 82
Query: 398 LDFGGNHFSGEIPSTLGNLSSLYEIFLGDNNLSGVIPSSL-GNLERLAILEMFANELSGT 456
LD N + S L L + +NL + S+ +L L L++
Sbjct: 83 LDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR-V 140
Query: 457 IPGDIF-NISSLSVSLDLAENHFVGSIPPRI-GNLKALRCFDVSNNDLSGEIPSEL--GL 512
IF +SSL V L +A N F + P I L+ L D+S L ++ L
Sbjct: 141 AFNGIFNGLSSLEV-LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSL 198
Query: 513 CSSLEEIYLAENFFNGFIPSFFRTSRGIRKVDLSRNNF-------FGQIPIFLEALSLEY 565
SSL+ + ++ N F ++ ++ +D S N+ P SL +
Sbjct: 199 -SSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPS-----SLAF 252
Query: 566 LNLSFNDF 573
LNL+ NDF
Sbjct: 253 LNLTQNDF 260
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 78.9 bits (195), Expect = 3e-16
Identities = 61/316 (19%), Positives = 102/316 (32%), Gaps = 65/316 (20%)
Query: 47 CEWEGITCDLRSKALSGLLSPQIGNLSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSD 106
C G SK L+ + P G S + L +N +Q F +L +L L LS
Sbjct: 5 CSCSGTEIRCNSKGLTSV--PT-GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSS 61
Query: 107 NSL--VGKIPANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTGGIPP- 163
N L G + + L L L N ++ ++ F+ L +L+ L +NL +
Sbjct: 62 NGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLK-QMSEF 119
Query: 164 -FLGNLTSLEVVSLAGNPFGGNIPDSLGQLKELKTLGIGGNNLSGSIPPSI-YNLSFLVI 221
+L +L + ++ L L+ L + GN+ + P I L L
Sbjct: 120 SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTF 179
Query: 222 FSVSENQMHGSLPPSLGLYFPNLKLFQTNENFFSGSIPISLSNASKLEYVEIASNSFFGK 281
+S+ Q+ L P+
Sbjct: 180 LDLSQCQLE-QLSPTA-------------------------------------------- 194
Query: 282 LSVNFGGMKNLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIA 341
F + +L L + +NN S ++ + LQVL N + +
Sbjct: 195 ----FNSLSSLQVLNMSHNNFFSLDT------FPYKCLNSLQVLDYSLNHIMTSKKQELQ 244
Query: 342 NLSSQLQILVLGTNQL 357
+ S L L L N
Sbjct: 245 HFPSSLAFLNLTQNDF 260
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 76.6 bits (189), Expect = 2e-15
Identities = 46/219 (21%), Positives = 86/219 (39%), Gaps = 13/219 (5%)
Query: 360 SIPSGIGNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNH--FSGEIPSTLGNLS 417
S+P+GI + L+ E N+ KL L L N F G + +
Sbjct: 21 SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTT 78
Query: 418 SLYEIFLGDNNLSGVIPSSLGNLERLAILEMFANELSGTIPGDIF-NISSLSVSLDLAEN 476
SL + L N + + S+ LE+L L+ + L +F ++ +L + LD++
Sbjct: 79 SLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL-IYLDISHT 136
Query: 477 HFVGSIPPRI-GNLKALRCFDVSNNDLSGEIPSE-LGLCSSLEEIYLAENFFNGFIPSFF 534
H I L +L ++ N + +L + L++ P+ F
Sbjct: 137 HTR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAF 195
Query: 535 RTSRGIRKVDLSRNNFFGQIP--IFLEALSLEYLNLSFN 571
+ ++ +++S NN F + + SL+ L+ S N
Sbjct: 196 NSLSSLQVLNMSHNN-FFSLDTFPYKCLNSLQVLDYSLN 233
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 87.0 bits (216), Expect = 9e-19
Identities = 59/302 (19%), Positives = 96/302 (31%), Gaps = 59/302 (19%)
Query: 286 FGGMKNLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLSS 345
F G+++L L+L N + + + KLQ L + N +P NL S
Sbjct: 74 FKGLQHLYALVLVNNKISKIHE------KAFSPLRKLQKLYISKNHLV-EIP---PNLPS 123
Query: 346 QLQILVLGTNQLYGSIPSGI-GNLVNLYSLQTEENQFT-GSIPKEMGKLLNLQGLDFGGN 403
L L + N++ +P G+ L N+ ++ N L L L
Sbjct: 124 SLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEA 182
Query: 404 HFSGEIPSTLGNLSSLYEIFLGDNNLSGVIPSSLGNLERLAILEMFANELSGTIPGDIFN 463
+ IP L +L E+ L N + + L +L L + N++ I +
Sbjct: 183 KLT-GIPKDL--PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIR-MIENGSLS 238
Query: 464 ISSLSVSLDLAENHFVGSIPPRIGNLKALRCFDVSNNDLSGEIPSELGLCSSLEEIYLAE 523
L LR + NN LS +P+ L L+ +YL
Sbjct: 239 ------------------------FLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHT 273
Query: 524 NFFNGFIPSFFRTSRGIRKVDLSRNNFFGQIPIFLEALSLEYLNLSFNDFEGRLPTRGIF 583
N I KV N F + ++ ++L N F
Sbjct: 274 NN--------------ITKVG---VNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATF 316
Query: 584 AN 585
Sbjct: 317 RC 318
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 83.1 bits (206), Expect = 2e-17
Identities = 54/276 (19%), Positives = 93/276 (33%), Gaps = 30/276 (10%)
Query: 261 SLSNASKLEYVEIASNSFFGKLSVN-FGGMKNLSYLILEYNNLGSGESDEMGFMNSLANC 319
L + + +N K+ F ++ L L + N+L N ++
Sbjct: 73 DFKGLQHLYALVLVNNKI-SKIHEKAFSPLRKLQKLYISKNHLVEIPP------NLPSS- 124
Query: 320 SKLQVLSLGGNQFRGALPHSIANLSSQLQILVLGTNQLY-GSIPSGIGNLVNLYSLQTEE 378
L L + N+ R + L + + + +G N L G + + L L+ E
Sbjct: 125 --LVELRIHDNRIRKVPKGVFSGLRN-MNCIEMGGNPLENSGFEPGAFDGLKLNYLRISE 181
Query: 379 NQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIPS-TLGNLSSLYEIFLGDNNLSGVIPSSL 437
+ T IPK++ L L N I L S LY + LG N + + SL
Sbjct: 182 AKLT-GIPKDL--PETLNELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQIRMIENGSL 237
Query: 438 GNLERLAILEMFANELSGTIPGDIFNISSLSVSLDLAENHFVGSIPPRI-------GNLK 490
L L L + N+LS +P + ++ L V + L N+ +
Sbjct: 238 SFLPTLRELHLDNNKLS-RVPAGLPDLKLLQV-VYLHTNNIT-KVGVNDFCPVGFGVKRA 294
Query: 491 ALRCFDVSNNDLS-GEIPSELGLC-SSLEEIYLAEN 524
+ NN + E+ C + I
Sbjct: 295 YYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 79.7 bits (197), Expect = 2e-16
Identities = 54/287 (18%), Positives = 99/287 (34%), Gaps = 16/287 (5%)
Query: 75 LREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPAN-LSYCSRLTVLVLGNNKL 133
++L NN I +F L+ L L+L +N + KI S +L L + N L
Sbjct: 56 TTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKIS-KIHEKAFSPLRKLQKLYISKNHL 114
Query: 134 VGSIPFEFVSLYKLKQLALPMNNLTGGIPPF-LGNLTSLEVVSLAGNPFG-GNIPDSLGQ 191
V IP L +L + N + +P L ++ + + GNP
Sbjct: 115 V-EIPPN--LPSSLVELRIHDNRIRK-VPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFD 170
Query: 192 LKELKTLGIGGNNLSGSIPPSIYNLSFLVIFSVSENQMHGSLPPSLGLYFPNLKLFQTNE 251
+L L I L+ IP + L + N++ ++ L + L
Sbjct: 171 GLKLNYLRISEAKLT-GIPKDL--PETLNELHLDHNKIQ-AIELEDLLRYSKLYRLGLGH 226
Query: 252 NFFSGSIPISLSNASKLEYVEIASNSFFGKLSVNFGGMKNLSYLILEYNNLGSGESDEMG 311
N SLS L + + +N ++ +K L + L NN+ ++
Sbjct: 227 NQIRMIENGSLSFLPTLRELHLDNNKL-SRVPAGLPDLKLLQVVYLHTNNITKVGVNDFC 285
Query: 312 FMNSLANCSKLQVLSLGGNQ--FRGALPHSIANLSSQLQILVLGTNQ 356
+ + +SL N + P + ++ + G +
Sbjct: 286 PVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTD-RLAIQFGNYK 331
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 66.2 bits (162), Expect = 6e-12
Identities = 43/192 (22%), Positives = 71/192 (36%), Gaps = 15/192 (7%)
Query: 384 SIPKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLGDNNLSGVIPSSLGNLERL 443
++PKE+ + LD N S L LY + L +N +S + + L +L
Sbjct: 47 AVPKEISP--DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKL 104
Query: 444 AILEMFANELSGTIPGDIFNISSLSVSLDLAENHFVGSIPPRI-GNLKALRCFDVSNNDL 502
L + N L IP ++ SSL V L + +N +P + L+ + C ++ N L
Sbjct: 105 QKLYISKNHLV-EIPPNLP--SSL-VELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPL 159
Query: 503 -SGEIPSELGLCSSLEEIYLAENFFNGFIPSFFRTSRGIRKVDLSRNNFFGQIP--IFLE 559
+ L + ++E G T + ++ L N I L
Sbjct: 160 ENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPET---LNELHLDHNK-IQAIELEDLLR 215
Query: 560 ALSLEYLNLSFN 571
L L L N
Sbjct: 216 YSKLYRLGLGHN 227
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 82.8 bits (204), Expect = 1e-16
Identities = 42/244 (17%), Positives = 92/244 (37%), Gaps = 32/244 (13%)
Query: 285 NFGGMKNLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLS 344
L+ ++ + + + + + + S+ +
Sbjct: 16 PDDAFAETIKDNLKKKSVTD--------AVTQNELNSIDQIIANNSDIK-----SVQGIQ 62
Query: 345 S--QLQILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGG 402
+ L L N+L I + NL NL L +EN+ + + L L+ L
Sbjct: 63 YLPNVTKLFLNGNKL-TDI-KPLTNLKNLGWLFLDENKIK-DLS-SLKDLKKLKSLSLEH 118
Query: 403 NHFSGEIPSTLGNLSSLYEIFLGDNNLSGVIPSSLGNLERLAILEMFANELSGTIPGDIF 462
N S +I + L +L L ++LG+N ++ + + L L +L L + N++S DI
Sbjct: 119 NGIS-DI-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQIS-----DIV 169
Query: 463 NISSLS--VSLDLAENHFVGSIPPRIGNLKALRCFDVSNNDLSGEIPSELGLCSSLEEIY 520
++ L+ +L L++NH + + + LK L ++ + + + + +
Sbjct: 170 PLAGLTKLQNLYLSKNH-ISDLRA-LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVK 227
Query: 521 LAEN 524
+
Sbjct: 228 NTDG 231
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 80.2 bits (197), Expect = 6e-16
Identities = 59/309 (19%), Positives = 107/309 (34%), Gaps = 60/309 (19%)
Query: 75 LREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLTVLVLGNNKLV 134
+ E ++ I+ P + L S+ + + + + ++ N+ +
Sbjct: 1 MGETITVSTPIKQIFPDD--AFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK 56
Query: 135 GSIPFEFVSLYKLKQLALPMNNLTGGIPPFLGNLTSLEVVSLAGNPFGGNIPD--SLGQL 192
S+ L + +L L N LT I P L NL +L + L N I D SL L
Sbjct: 57 -SVQG-IQYLPNVTKLFLNGNKLT-DIKP-LTNLKNLGWLFLDEN----KIKDLSSLKDL 108
Query: 193 KELKTLGIGGNNLSGSIPPSIYNLSFLVIFSVSENQMHGSLPPSLGLYFPNLKLFQTNEN 252
K+LK+L + N +S I + +L L + N++
Sbjct: 109 KKLKSLSLEHNGIS-DING-LVHLPQLESLYLGNNKI----------------------- 143
Query: 253 FFSGSIPISLSNASKLEYVEIASNSFFGKLS--VNFGGMKNLSYLILEYNNLGSGESDEM 310
+ LS +KL+ + + N ++S V G+ L L L N++
Sbjct: 144 ----TDITVLSRLTKLDTLSLEDN----QISDIVPLAGLTKLQNLYLSKNHISD------ 189
Query: 311 GFMNSLANCSKLQVLSLGGNQFRGALPHSIANLSSQLQILVLGTNQLYGSIPSGIGNLVN 370
+ +LA L VL L + + +NL + L P I + +
Sbjct: 190 --LRALAGLKNLDVLELFSQECLNKPINHQSNL-VVPNTVKNTDGSLV--TPEIISDDGD 244
Query: 371 LYSLQTEEN 379
+ +
Sbjct: 245 YEKPNVKWH 253
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 75.1 bits (184), Expect = 3e-14
Identities = 51/310 (16%), Positives = 103/310 (33%), Gaps = 59/310 (19%)
Query: 147 LKQLALPMNNLTGGIPPFLGNLTSLEVVSLAGNPFGGNIPDSLGQLKELKTLGIGGNNLS 206
+ + + ++ I P +L + +L + + +++
Sbjct: 1 MGET-ITVSTPIKQIFP-DDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK 56
Query: 207 GSIPPSIYNLSFLVIFSVSENQMHGSLPPSLGLYFPNLKLFQTNENFFSGSIPISLSNAS 266
S+ I L + ++ N++ + P L+N
Sbjct: 57 -SVQG-IQYLPNVTKLFLNGNKLT-DIKP--------------------------LTNLK 87
Query: 267 KLEYVEIASNSFFGKLS--VNFGGMKNLSYLILEYNNLGSGESDEMGFMNSLANCSKLQV 324
L ++ + N K+ + +K L L LE+N + +N L + +L+
Sbjct: 88 NLGWLFLDEN----KIKDLSSLKDLKKLKSLSLEHNGISD--------INGLVHLPQLES 135
Query: 325 LSLGGNQFRGALPHSIANLS--SQLQILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFT 382
L LG N+ I LS ++L L L NQ+ S + L L +L +N +
Sbjct: 136 LYLGNNKI-----TDITVLSRLTKLDTLSLEDNQI--SDIVPLAGLTKLQNLYLSKNHIS 188
Query: 383 GSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLGDNNLSGVIP-SSLGNLE 441
+ + + L NL L+ + + NL + D +L S G+ E
Sbjct: 189 -DL-RALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYE 246
Query: 442 RLAILEMFAN 451
+ +
Sbjct: 247 KPNVKWHLPE 256
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 73.2 bits (179), Expect = 9e-14
Identities = 49/283 (17%), Positives = 91/283 (32%), Gaps = 62/283 (21%)
Query: 123 LTVLVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTGGIPPFLGNLTSLEVVSLAGNPFG 182
+ + + + P + + + + L ++T L S++ + +
Sbjct: 1 MGETITVSTPIKQIFPDD--AFAETIKDNLKKKSVTD--AVTQNELNSIDQIIANNS--- 53
Query: 183 GNIPD--SLGQLKELKTLGIGGNNLSGSIPPSIYNLSFLVIFSVSENQMHGSLPPSLGLY 240
+I + L + L + GN L+ I P + NL L + EN++
Sbjct: 54 -DIKSVQGIQYLPNVTKLFLNGNKLT-DIKP-LTNLKNLGWLFLDENKIK---------- 100
Query: 241 FPNLKLFQTNENFFSGSIPISLSNASKLEYVEIASNSFFGKLSV--NFGGMKNLSYLILE 298
+ SL + KL+ + + N +S + L L L
Sbjct: 101 ----------------DLS-SLKDLKKLKSLSLEHN----GISDINGLVHLPQLESLYLG 139
Query: 299 YNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLSS--QLQILVLGTNQ 356
N + + L+ +KL LSL NQ I L+ +LQ L L N
Sbjct: 140 NNKITD--------ITVLSRLTKLDTLSLEDNQIS-----DIVPLAGLTKLQNLYLSKNH 186
Query: 357 LYGSIPSGIGNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLD 399
+ S + L NL L+ + L+ +
Sbjct: 187 I--SDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVK 227
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 71.7 bits (175), Expect = 3e-13
Identities = 47/228 (20%), Positives = 86/228 (37%), Gaps = 19/228 (8%)
Query: 69 IGNLSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLTVLVL 128
I L + ++ L N + PL L+ L L L +N + + +L +L L L
Sbjct: 61 IQYLPNVTKLFLNGNKLTDIKPLT--NLKNLGWLFLDENKIK-DLS-SLKDLKKLKSLSL 116
Query: 129 GNNKLVGSIPFEFVSLYKLKQLALPMNNLTGGIPPFLGNLTSLEVVSLAGNPFGGNIPD- 187
+N + I V L +L+ L L N +T L LT L+ +SL N I D
Sbjct: 117 EHNGIS-DING-LVHLPQLESLYLGNNKIT--DITVLSRLTKLDTLSLEDN----QISDI 168
Query: 188 -SLGQLKELKTLGIGGNNLSGSIPPSIYNLSFLVIFSVSENQMHGSLPPSLGLYFPNLKL 246
L L +L+ L + N++S + + L L + + + +
Sbjct: 169 VPLAGLTKLQNLYLSKNHIS-DLRA-LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTV 226
Query: 247 FQTNENFFSGSIPISLSNASKLEYVEIASNSFFGKLSVNFGGMKNLSY 294
T+ + + P +S+ E + + V+F + ++
Sbjct: 227 KNTDGSLVT---PEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTI 271
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 62.0 bits (150), Expect = 3e-10
Identities = 35/183 (19%), Positives = 67/183 (36%), Gaps = 18/183 (9%)
Query: 391 KLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLGDNNLSGVIPSSLGNLERLAILEMFA 450
+ + + L+S+ +I ++++ V + L + L +
Sbjct: 19 AFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNG 74
Query: 451 NELSGTIPGDIFNISSLS--VSLDLAENHFVGSIPPRIGNLKALRCFDVSNNDLSGEIPS 508
N+L+ DI +++L L L EN + + + +LK L+ + +N +S +I
Sbjct: 75 NKLT-----DIKPLTNLKNLGWLFLDENK-IKDLSS-LKDLKKLKSLSLEHNGIS-DING 126
Query: 509 ELGLCSSLEEIYLAENFFNGFIPSFFRTSRGIRKVDLSRNNFFGQIPIFLEALSLEYLNL 568
L LE +YL N + + + L N I L+ L L
Sbjct: 127 -LVHLPQLESLYLGNN--KITDITVLSRLTKLDTLSLEDNQI-SDIVPLAGLTKLQNLYL 182
Query: 569 SFN 571
S N
Sbjct: 183 SKN 185
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 60.1 bits (145), Expect = 1e-09
Identities = 47/225 (20%), Positives = 75/225 (33%), Gaps = 36/225 (16%)
Query: 69 IGNLSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLTVLVL 128
+ NL L + L N I+ L+ L++L++L L N + I L + +L L L
Sbjct: 83 LTNLKNLGWLFLDENKIKDLSSLK--DLKKLKSLSLEHNGIS-DIN-GLVHLPQLESLYL 138
Query: 129 GNNKLVGSIPFEFVSLYKLKQLALPMNNLTGGIPPF---------------------LGN 167
GNNK+ L KL L+L N ++ I P L
Sbjct: 139 GNNKITDITVLS--RLTKLDTLSLEDNQISD-IVPLAGLTKLQNLYLSKNHISDLRALAG 195
Query: 168 LTSLEVVSLAGNPFGGNIPDSLGQLKELKTLGIGGNNLSGSI--PPSIYNLSFLVIFSVS 225
L +L+V+ L + L T+ N GS+ P I + +V
Sbjct: 196 LKNLDVLELFSQECLNKPINHQSNLVVPNTV----KNTDGSLVTPEIISDDGDYEKPNVK 251
Query: 226 ENQMHGSLPPSLGLYFPNLKLFQTNENFFSGSIPISLSNASKLEY 270
+ + F + F G + L + Y
Sbjct: 252 WHLP--EFTNEVSFIFYQPVTIGKAKARFHGRVTQPLKEVYTVSY 294
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 80.6 bits (199), Expect = 3e-16
Identities = 70/292 (23%), Positives = 109/292 (37%), Gaps = 45/292 (15%)
Query: 47 CEWEGITCDLRSKALSGLLSPQIGNLS-FLREINLMNNTIQGEIPLEFGRLRRLETLLLS 105
C + K L + P +S R +NL N IQ F LR LE L LS
Sbjct: 41 CSNQFSKVICVRKNLREV--PD--GISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLS 96
Query: 106 DNSLVGKIPAN-LSYCSRLTVLVLGNNKLVGSIPFE-FVSLYKLKQLALPMNNLTGGIPP 163
N + I + + L L L +N+L +IP FV L KLK+L L N + IP
Sbjct: 97 RNHI-RTIEIGAFNGLANLNTLELFDNRLT-TIPNGAFVYLSKLKELWLRNNPIE-SIPS 153
Query: 164 FL-GNLTSLEVVSLAGNPFGGNIP-DSLGQLKELKTLGIGGNNLSGSIPPSIYNLSFLVI 221
+ + SL + L I + L L+ L + NL I P++ L L
Sbjct: 154 YAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EI-PNLTPLIKLDE 211
Query: 222 FSVSENQMHGSLPPSLGLYFPNLKLFQTNENFFSGSIPISLSNASKLEYVEIASNSFFGK 281
+S N + ++ P F L Q + + S+++ +E +
Sbjct: 212 LDLSGNHLS-AIRPGS---FQGLMHLQK----------LWMIQ-SQIQVIERNA------ 250
Query: 282 LSVNFGGMKNLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFR 333
F +++L + L +NNL D L+ + L N +
Sbjct: 251 ----FDNLQSLVEINLAHNNLTLLPHD------LFTPLHHLERIHLHHNPWN 292
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 80.2 bits (198), Expect = 4e-16
Identities = 65/334 (19%), Positives = 105/334 (31%), Gaps = 86/334 (25%)
Query: 97 RRLETLLLSDNSLVGKIPANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPMNN 156
+ ++ +L ++P +S + +L L N++ F L L+ L L N+
Sbjct: 43 NQFSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNH 99
Query: 157 LTGGIPPFLGNLTSLEVVSLAGNPFGGNIPDSLGQLKELKTLGIGGNNLSGSIPPSI-YN 215
+ ++E + L L TL + N L+ +IP
Sbjct: 100 IR-----------TIE-------------IGAFNGLANLNTLELFDNRLT-TIPNGAFVY 134
Query: 216 LSFLVIFSVSENQMHGSLPPSLGLYFPNLKLFQTNENFFSGSIPISLSNASKLEYVEIAS 275
LS L + N + S+P P+L+ + L +L Y+ +
Sbjct: 135 LSKLKELWLRNNPIE-SIPSYAFNRIPSLRR-------------LDLGELKRLSYISEGA 180
Query: 276 NSFFGKLSVNFGGMKNLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGA 335
F G+ NL YL L NL + +L KL L L GN
Sbjct: 181 ----------FEGLSNLRYLNLAMCNLRE--------IPNLTPLIKLDELDLSGNHLSAI 222
Query: 336 LPHSIANLSSQLQILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSIPKEMGKLLNL 395
P S L LQ L + +Q+ I F L +L
Sbjct: 223 RPGSFQGLMH-LQKLWMIQSQI-QVIERNA---------------FDN--------LQSL 257
Query: 396 QGLDFGGNHFSGEIPSTLGNLSSLYEIFLGDNNL 429
++ N+ + L L I L N
Sbjct: 258 VEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW 291
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 76.3 bits (188), Expect = 7e-15
Identities = 57/265 (21%), Positives = 98/265 (36%), Gaps = 26/265 (9%)
Query: 194 ELKTLGIGGNNLSGSIPPSI-YNLSFLVIFSVSENQMHGSLPPSLGLYFPNLKLFQTNEN 252
+ + NL +P I N L ++ ENQ+ + + + +L++ Q + N
Sbjct: 44 QFSKVICVRKNLR-EVPDGISTNTRLL---NLHENQIQ-IIKVNSFKHLRHLEILQLSRN 98
Query: 253 FFSGSIPISLSNASKLEYVEIASNSFFGKLSV----NFGGMKNLSYLILEYNNLGSGESD 308
+ + + L +E+ N +L+ F + L L L N + S S
Sbjct: 99 HIRTIEIGAFNGLANLNTLELFDN----RLTTIPNGAFVYLSKLKELWLRNNPIESIPSY 154
Query: 309 EMGFMNSLANCSKLQVLSLGG-NQFRGALPHSIANLSSQLQILVLGTNQLYGSIPSGIGN 367
+ L+ L LG + + LS+ L+ L L L IP+ +
Sbjct: 155 ------AFNRIPSLRRLDLGELKRLSYISEGAFEGLSN-LRYLNLAMCNLR-EIPN-LTP 205
Query: 368 LVNLYSLQTEENQFTGSIPKEM-GKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLGD 426
L+ L L N + +I L++LQ L + + NL SL EI L
Sbjct: 206 LIKLDELDLSGNHLS-AIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAH 264
Query: 427 NNLSGVIPSSLGNLERLAILEMFAN 451
NNL+ + L L + + N
Sbjct: 265 NNLTLLPHDLFTPLHHLERIHLHHN 289
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 75.6 bits (186), Expect = 1e-14
Identities = 56/216 (25%), Positives = 88/216 (40%), Gaps = 11/216 (5%)
Query: 360 SIPSGIGNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSL 419
+P GI N L ENQ L +L+ L NH L++L
Sbjct: 57 EVPDGI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANL 114
Query: 420 YEIFLGDNNLSGVIPSSLGNLERLAILEMFANELSGTIPGDIF-NISSLSVSLDLAENHF 478
+ L DN L+ + + L +L L + N + +IP F I SL LDL E
Sbjct: 115 NTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSL-RRLDLGELKR 172
Query: 479 VGSIPPRI-GNLKALRCFDVSNNDLSGEIPSELGLCSSLEEIYLAENFFNGFIPSFFRTS 537
+ I L LR +++ +L EIP+ L L+E+ L+ N + P F+
Sbjct: 173 LSYISEGAFEGLSNLRYLNLAMCNLR-EIPNLTPL-IKLDELDLSGNHLSAIRPGSFQGL 230
Query: 538 RGIRKVDLSRNNFFGQIP--IFLEALSLEYLNLSFN 571
++K+ + ++ I F SL +NL+ N
Sbjct: 231 MHLQKLWMIQSQ-IQVIERNAFDNLQSLVEINLAHN 265
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 78.6 bits (194), Expect = 4e-16
Identities = 49/265 (18%), Positives = 96/265 (36%), Gaps = 34/265 (12%)
Query: 260 ISLSNASKLEYVEIASNSFFGKLSVNFGGMKNLSYLILEYNNLGSGESDEMGFMNSLANC 319
+ + ++ +V + ++ L + + + +
Sbjct: 13 FPDPALANAIKIAAGKSNVTD--TVTQADLDGITTLSAFGTGVTT--------IEGVQYL 62
Query: 320 SKLQVLSLGGNQFRGALPHSIANLS--SQLQILVLGTNQLYGSIPSGIGNLVNLYSLQTE 377
+ L L L NQ +A L +++ L L N L S I L ++ +L
Sbjct: 63 NNLIGLELKDNQIT-----DLAPLKNLTKITELELSGNPL--KNVSAIAGLQSIKTLDLT 115
Query: 378 ENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLGDNNLSGVIPSSL 437
Q T P + L NLQ L N + I L L++L + +G+ +S + + L
Sbjct: 116 STQITDVTP--LAGLSNLQVLYLDLNQIT-NISP-LAGLTNLQYLSIGNAQVSDL--TPL 169
Query: 438 GNLERLAILEMFANELSGTIPGDIFNISSLS--VSLDLAENHFVGSIPPRIGNLKALRCF 495
NL +L L+ N++S DI ++SL + + L N + + P + N L
Sbjct: 170 ANLSKLTTLKADDNKIS-----DISPLASLPNLIEVHLKNNQ-ISDVSP-LANTSNLFIV 222
Query: 496 DVSNNDLSGEIPSELGLCSSLEEIY 520
++N ++ + +
Sbjct: 223 TLTNQTITNQPVFYNNNLVVPNVVK 247
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 74.0 bits (182), Expect = 2e-14
Identities = 55/262 (20%), Positives = 105/262 (40%), Gaps = 34/262 (12%)
Query: 189 LGQLKELKTLGIGGNNLSGSIPPSIYNLSFLVIFSVSENQMHGSLPPSLGLYFPNLKLFQ 248
L + G +N++ + +L + S + ++ + Y NL +
Sbjct: 15 DPALANAIKIAAGKSNVTD--TVTQADLDGITTLSAFGTGVT-TIEG-VQ-YLNNLIGLE 69
Query: 249 TNENFFSGSIPISLSNASKLEYVEIASNSFFGKLSV--NFGGMKNLSYLILEYNNLGSGE 306
+N + + L N +K+ +E++ N L G++++ L L +
Sbjct: 70 LKDNQIT-DLA-PLKNLTKITELELSGN----PLKNVSAIAGLQSIKTLDLTSTQITD-- 121
Query: 307 SDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLS--SQLQILVLGTNQLYGSIPSG 364
+ LA S LQVL L NQ +I+ L+ + LQ L +G Q+ S +
Sbjct: 122 ------VTPLAGLSNLQVLYLDLNQIT-----NISPLAGLTNLQYLSIGNAQV--SDLTP 168
Query: 365 IGNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFL 424
+ NL L +L+ ++N+ + I + L NL + N S P L N S+L+ + L
Sbjct: 169 LANLSKLTTLKADDNKIS-DIS-PLASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTL 224
Query: 425 GDNNLSGVIPSSLGNLERLAIL 446
+ ++ NL ++
Sbjct: 225 TNQTITNQPVFYNNNLVVPNVV 246
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 64.7 bits (158), Expect = 1e-11
Identities = 45/228 (19%), Positives = 90/228 (39%), Gaps = 22/228 (9%)
Query: 346 QLQILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHF 405
+ G + + + +L + +L T +I + L NL GL+ N
Sbjct: 20 NAIKIAAGKSNV--TDTVTQADLDGITTLSAFGTGVT-TIE-GVQYLNNLIGLELKDNQI 75
Query: 406 SGEIPSTLGNLSSLYEIFLGDNNLSGVIPSSLGNLERLAILEMFANELSGTIPGDIFNIS 465
+ + L NL+ + E+ L N L V S++ L+ + L++ + +++ D+ ++
Sbjct: 76 TD--LAPLKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDLTSTQIT-----DVTPLA 126
Query: 466 SLS--VSLDLAENHFVGSIPPRIGNLKALRCFDVSNNDLSGEIPSELGLCSSLEEIYLAE 523
LS L L N + +I P + L L+ + N +S + L S L + +
Sbjct: 127 GLSNLQVLYLDLNQ-ITNISP-LAGLTNLQYLSIGNAQVSDL--TPLANLSKLTTLKADD 182
Query: 524 NFFNGFIPSFFRTSRGIRKVDLSRNNFFGQIPIFLEALSLEYLNLSFN 571
N + S + + +V L NN + +L + L+
Sbjct: 183 NKISDI--SPLASLPNLIEVHLK-NNQISDVSPLANTSNLFIVTLTNQ 227
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 64.3 bits (157), Expect = 2e-11
Identities = 51/222 (22%), Positives = 89/222 (40%), Gaps = 19/222 (8%)
Query: 69 IGNLSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLTVLVL 128
+ L+ L + L +N I PL+ L ++ L LS N L K + ++ + L L
Sbjct: 59 VQYLNNLIGLELKDNQITDLAPLK--NLTKITELELSGNPL--KNVSAIAGLQSIKTLDL 114
Query: 129 GNNKLVGSIPFEFVSLYKLKQLALPMNNLTGGIPPFLGNLTSLEVVSLAGNPFGGNIPD- 187
+ ++ P L L+ L L +N +T I P L LT+L+ +S+ + D
Sbjct: 115 TSTQITDVTPLA--GLSNLQVLYLDLNQIT-NISP-LAGLTNLQYLSIGNA----QVSDL 166
Query: 188 -SLGQLKELKTLGIGGNNLSGSIPPSIYNLSFLVIFSVSENQMHGSLPPSLGLYFPNLKL 246
L L +L TL N +S I P + +L L+ + NQ+ + P NL +
Sbjct: 167 TPLANLSKLTTLKADDNKIS-DISP-LASLPNLIEVHLKNNQIS-DVSPLANT--SNLFI 221
Query: 247 FQTNENFFSGSIPISLSNASKLEYVEIASNSFFGKLSVNFGG 288
+ +N V+ S + +++ G
Sbjct: 222 VTLTNQTITNQPVFYNNNLVVPNVVKGPSGAPIAPATISDNG 263
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 60.1 bits (146), Expect = 5e-10
Identities = 37/211 (17%), Positives = 80/211 (37%), Gaps = 20/211 (9%)
Query: 363 SGIGNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEI 422
L N + ++ T ++ + L + L G + I + L++L +
Sbjct: 13 FPDPALANAIKIAAGKSNVTDTVTQA--DLDGITTLSAFGTGVT-TIEG-VQYLNNLIGL 68
Query: 423 FLGDNNLSGVIPSSLGNLERLAILEMFANELSGTIPGDIFNISSLS--VSLDLAENHFVG 480
L DN ++ + + L NL ++ LE+ N L ++ I+ L +LDL +
Sbjct: 69 ELKDNQITDL--APLKNLTKITELELSGNPLK-----NVSAIAGLQSIKTLDLTSTQ-IT 120
Query: 481 SIPPRIGNLKALRCFDVSNNDLSGEIPSELGLCSSLEEIYLAENFFNGFIPSFFRTSRGI 540
+ P + L L+ + N ++ I S L ++L+ + + + + +
Sbjct: 121 DVTP-LAGLSNLQVLYLDLNQIT-NI-SPLAGLTNLQYLSIGNAQVSDL--TPLANLSKL 175
Query: 541 RKVDLSRNNFFGQIPIFLEALSLEYLNLSFN 571
+ +N I +L ++L N
Sbjct: 176 TTLKAD-DNKISDISPLASLPNLIEVHLKNN 205
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 75.8 bits (187), Expect = 6e-16
Identities = 29/191 (15%), Positives = 67/191 (35%), Gaps = 14/191 (7%)
Query: 242 PNLKLFQTNENFFSGSIPISLSNASKLEYVEIASNSFFGKLSVNFGGMKNLSYLILEYNN 301
K + S + I+ + + L Y+ +A+ + L+ N+ L + +
Sbjct: 20 STFKAYLNGLLGQSSTANITEAQMNSLTYITLANINV-TDLT-GIEYAHNIKDLTINNIH 77
Query: 302 LGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLSSQLQILVLGTNQLYGSI 361
+ N ++ S L+ L + G +++ L + L +L + + SI
Sbjct: 78 ATN--------YNPISGLSNLERLRIMGKDVTSDKIPNLSGL-TSLTLLDISHSAHDDSI 128
Query: 362 PSGIGNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYE 421
+ I L + S+ N I + L L+ L+ + + + L +
Sbjct: 129 LTKINTLPKVNSIDLSYNGAITDI-MPLKTLPELKSLNIQFDGVHDYRG--IEDFPKLNQ 185
Query: 422 IFLGDNNLSGV 432
++ + G
Sbjct: 186 LYAFSQTIGGK 196
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 70.8 bits (174), Expect = 3e-14
Identities = 24/158 (15%), Positives = 58/158 (36%), Gaps = 8/158 (5%)
Query: 71 NLSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLTVLVLGN 130
L ++ + ++ L + L++ ++ + Y + L + N
Sbjct: 21 TFKAYLNGLLGQSSTA---NITEAQMNSLTYITLANINV--TDLTGIEYAHNIKDLTINN 75
Query: 131 NKLVGSIPFEFVSLYKLKQLALPMNNLTGGIPPFLGNLTSLEVVSLAGNPFGGNIPDSLG 190
P L L++L + ++T P L LTSL ++ ++ + +I +
Sbjct: 76 IHATNYNPIS--GLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKIN 133
Query: 191 QLKELKTLGIGGNNLSGSIPPSIYNLSFLVIFSVSENQ 228
L ++ ++ + N I P + L L ++ +
Sbjct: 134 TLPKVNSIDLSYNGAITDIMP-LKTLPELKSLNIQFDG 170
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 68.8 bits (169), Expect = 1e-13
Identities = 27/167 (16%), Positives = 48/167 (28%), Gaps = 17/167 (10%)
Query: 315 SLANCSKLQVLSLGGNQFRGALPHSIANLS--SQLQILVLGTNQLYGSIPSGIGNLVNLY 372
+ A + L ++L + + ++ L + + + I L NL
Sbjct: 39 TEAQMNSLTYITLANINVT-----DLTGIEYAHNIKDLTINNIHA--TNYNPISGLSNLE 91
Query: 373 SLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLGDNNLSGV 432
L+ T + L +L LD + I + + L + I L N
Sbjct: 92 RLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITD 151
Query: 433 IPSSLGNLERLAILEMFANELSGTIPGDIFNISSLS--VSLDLAENH 477
I L L L L + + + D I L
Sbjct: 152 I-MPLKTLPELKSLNIQFDGVH-----DYRGIEDFPKLNQLYAFSQT 192
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 68.4 bits (168), Expect = 2e-13
Identities = 28/141 (19%), Positives = 54/141 (38%), Gaps = 9/141 (6%)
Query: 69 IGNLSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLTVLVL 128
I ++++ + N P+ L LE L + + NLS + LT+L +
Sbjct: 62 IEYAHNIKDLTINNIHATNYNPIS--GLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI 119
Query: 129 GNNKLVGSIPFEFVSLYKLKQLALPMNNLTGGIPPFLGNLTSLEVVSLAGNPFGGNIPD- 187
++ SI + +L K+ + L N I P L L L+ +++ + + D
Sbjct: 120 SHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP-LKTLPELKSLNIQFD----GVHDY 174
Query: 188 -SLGQLKELKTLGIGGNNLSG 207
+ +L L + G
Sbjct: 175 RGIEDFPKLNQLYAFSQTIGG 195
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 56.1 bits (136), Expect = 3e-09
Identities = 22/190 (11%), Positives = 62/190 (32%), Gaps = 42/190 (22%)
Query: 144 LYKLKQLALPMNNLTGGIPPFLGNLTSLEVVSLAGNPFGGNIPD--SLGQLKELKTLGIG 201
+ L + L N+T + + +++ +++ + + + L L+ L I
Sbjct: 43 MNSLTYITLANINVTD-LTG-IEYAHNIKDLTINNI----HATNYNPISGLSNLERLRIM 96
Query: 202 GNNLSGSIPPSIYNLSFLVIFSVSENQMHGSLPPSLGLYFPNLKLFQTNENFFSGSIPIS 261
G +++ P++ L+ L + +S + SI
Sbjct: 97 GKDVTSDKIPNLSGLTSLTLLDISHSAH-------------------------DDSILTK 131
Query: 262 LSNASKLEYVEIASNSFFGKLSVNFGGMKNLSYLILEYNNLGSGESDEMGFMNSLANCSK 321
++ K+ ++++ N + + L L ++++ + + + K
Sbjct: 132 INTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHD--------YRGIEDFPK 182
Query: 322 LQVLSLGGNQ 331
L L
Sbjct: 183 LNQLYAFSQT 192
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 54.2 bits (131), Expect = 2e-08
Identities = 25/162 (15%), Positives = 56/162 (34%), Gaps = 11/162 (6%)
Query: 412 TLGNLSSLYEIFLGDNNLSGVIPSSLGNLERLAILEMFANELSGTIPGDIFNISSLS--V 469
T ++SL I L + N++ + + + + L + + + IS LS
Sbjct: 39 TEAQMNSLTYITLANINVTDL--TGIEYAHNIKDLTINNIHAT-----NYNPISGLSNLE 91
Query: 470 SLDLAENHFVGSIPPRIGNLKALRCFDVSNNDLSGEIPSELGLCSSLEEIYLAENFFNGF 529
L + P + L +L D+S++ I +++ + I L+ N
Sbjct: 92 RLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITD 151
Query: 530 IPSFFRTSRGIRKVDLSRNNFFGQIPIFLEALSLEYLNLSFN 571
I +T ++ +++ + + L L
Sbjct: 152 I-MPLKTLPELKSLNIQFDG-VHDYRGIEDFPKLNQLYAFSQ 191
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 47.6 bits (114), Expect = 2e-06
Identities = 19/105 (18%), Positives = 39/105 (37%), Gaps = 3/105 (2%)
Query: 55 DLRSKALSGLLSPQIGNLSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIP 114
+ K ++ P + L+ L +++ ++ I + L ++ ++ LS N + I
Sbjct: 94 RIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM 153
Query: 115 ANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTG 159
L L L + + + E KL QL + G
Sbjct: 154 -PLKTLPELKSLNIQFDGVHDYRGIE--DFPKLNQLYAFSQTIGG 195
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 74.9 bits (184), Expect = 6e-15
Identities = 41/226 (18%), Positives = 76/226 (33%), Gaps = 17/226 (7%)
Query: 366 GNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIPST---LGNLSSLYEI 422
G Y L+ + + ++ K L+L+ L I + +S L E+
Sbjct: 41 GGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQEL 100
Query: 423 FLGDNNLSGVIPSSLGNLERLAILEMFANELS----GTIPGDIFNISSLSV-SLDLAENH 477
L + ++G P L + + +S ++ + L +A+ H
Sbjct: 101 TLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAH 160
Query: 478 FVGSIPPRIGNLKALRCFDVSNNDLSGEIPSELGLC----SSLEEIYLAENFFN---GFI 530
+ ++ AL D+S+N GE LC +L+ + L G
Sbjct: 161 SLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVC 220
Query: 531 PSFFRTSRGIRKVDLSRNNFFGQIP--IFLEALSLEYLNLSFNDFE 574
+ ++ +DLS N+ L LNLSF +
Sbjct: 221 SALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK 266
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 68.0 bits (166), Expect = 1e-12
Identities = 40/244 (16%), Positives = 74/244 (30%), Gaps = 21/244 (8%)
Query: 75 LREINLMNNTIQGEIP---LEFGRLRRLETLLLSDNSLVGKIPANLS--YCSRLTVLVLG 129
L+ + + I I L + L+ L L + + G P L L +L L
Sbjct: 70 LKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLR 129
Query: 130 NNKLVGSIPF----EFVSLYKLKQLALPMNNLTGGIPPFLGNLTSLEVVSLAGNPFGGNI 185
N + + LK L++ + + +L + L+ NP G
Sbjct: 130 NVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGER 189
Query: 186 -------PDSLGQLKELKTLGIGGNNLSGSIPPSIYNLSFLVIFSVSENQMHGSLPPSLG 238
P L+ L G SG L +S N + +
Sbjct: 190 GLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSC 249
Query: 239 LYFPNLKLFQTNENFFSGSIPISLSNASKLEYVEIASNSFFGKLSVNFGGMKNLSYLILE 298
+ L + +P L +KL ++++ N + + + + L L+
Sbjct: 250 DWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRL--DRNPSPDELPQVGNLSLK 304
Query: 299 YNNL 302
N
Sbjct: 305 GNPF 308
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 66.1 bits (161), Expect = 6e-12
Identities = 54/306 (17%), Positives = 94/306 (30%), Gaps = 50/306 (16%)
Query: 286 FGGMKNLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIANL-- 343
+GG ++L YL+ + +G + L+ L++ + + +
Sbjct: 39 YGGGRSLEYLLKRVDTEAD-----LGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLG 93
Query: 344 SSQLQILVLGTNQLYGSIPSGIGNLV--NLYSLQTEENQFTG--SIPKEMGKLL--NLQG 397
S LQ L L ++ G+ P + +L L + + E+ + L L+
Sbjct: 94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKV 153
Query: 398 LDFGGNHFSGEIPSTLGNLSSLYEIFLGDNNLSG-------VIPSSLGNLERLAILEMFA 450
L H + +L + L DN G + P L+ LA+
Sbjct: 154 LSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGM 213
Query: 451 NELSGTIPGDIFNISSLSVSLDLAENHFVGSIPPRI-GNLKALRCFDVSNNDLSGEIPSE 509
SG L LDL+ N + L ++S L ++P
Sbjct: 214 ETPSGVCSALAAARVQLQ-GLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKG 271
Query: 510 LGLCSSLEEIYLAENFFNGFIPSFFRTSRGIRKVDLSRNNFFGQIPIFLEALSLEYLNLS 569
L + L + DLS N + P E + L+L
Sbjct: 272 LP--AKLSVL------------------------DLSYNRL-DRNPSPDELPQVGNLSLK 304
Query: 570 FNDFEG 575
N F
Sbjct: 305 GNPFLD 310
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 59.5 bits (144), Expect = 9e-10
Identities = 45/222 (20%), Positives = 74/222 (33%), Gaps = 17/222 (7%)
Query: 195 LKTLGIGGNNLSGSIPPSIY-----NLSFLVIFSVSENQMHGSLPPSLGLYFPNLKLFQT 249
L+ L + ++G+ PP + +L+ L + +VS L P LK+
Sbjct: 97 LQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSI 156
Query: 250 NENFFSGSIPISLSNASKLEYVEIASNSFFGKL----SVNFGGMKNLSYLILEYNNLGSG 305
+ + L ++++ N G+ ++ L L L +
Sbjct: 157 AQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGM--- 213
Query: 306 ESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLSSQLQILVLGTNQLYGSIPSGI 365
E+ A +LQ L L N R A + SQL L L L +P G+
Sbjct: 214 ETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGL 272
Query: 366 GNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSG 407
L L N+ P +L + L GN F
Sbjct: 273 PA--KLSVLDLSYNRLD-RNPSP-DELPQVGNLSLKGNPFLD 310
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 56.4 bits (136), Expect = 8e-09
Identities = 33/192 (17%), Positives = 47/192 (24%), Gaps = 9/192 (4%)
Query: 260 ISLSNASKLEYVEIASNSFFGKLSVNFGGMKNLSYLILEYNNLGSGESDEMGFMNSLANC 319
+ + S L+ + + + G IL N+ D
Sbjct: 89 LRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLK 148
Query: 320 SKLQVLSLGGNQFRGALPHSIANLSSQLQILVLGTNQLYGSI-------PSGIGNLVNLY 372
L+VLS+ + L L L N G P L L
Sbjct: 149 PGLKVLSIAQAHSL-NFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLA 207
Query: 373 SLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIP-STLGNLSSLYEIFLGDNNLSG 431
+G + LQGLD N + S L + L L
Sbjct: 208 LRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQ 267
Query: 432 VIPSSLGNLERL 443
V L L
Sbjct: 268 VPKGLPAKLSVL 279
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 74.4 bits (183), Expect = 8e-15
Identities = 51/187 (27%), Positives = 69/187 (36%), Gaps = 14/187 (7%)
Query: 291 NLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLSSQLQIL 350
+ + L L N L + +L ++L L+L + L + L L
Sbjct: 32 DTTILHLSENLLYTFSL------ATLMPYTRLTQLNLDRAELT-KLQ--VDGTLPVLGTL 82
Query: 351 VLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSIPKEM-GKLLNLQGLDFGGNHFSGEI 409
L NQL S+P L L L N+ T S+P L LQ L GN
Sbjct: 83 DLSHNQL-QSLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLP 140
Query: 410 PSTLGNLSSLYEIFLGDNNLSGVIPSSLGNLERLAILEMFANELSGTIPGDIFNISSLSV 469
P L L ++ L +NNL+ + L LE L L + N L TIP F L
Sbjct: 141 PGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLP- 198
Query: 470 SLDLAEN 476
L N
Sbjct: 199 FAFLHGN 205
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 70.5 bits (173), Expect = 2e-13
Identities = 46/203 (22%), Positives = 75/203 (36%), Gaps = 16/203 (7%)
Query: 47 CEWEGITCDLRSKALSGLLSPQIGNLSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSD 106
+ + + L+ L P ++L N + RL L L
Sbjct: 8 KVASHLEVNCDKRNLTAL--PP-DLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDR 64
Query: 107 NSLVGKIPANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTGGIPP-FL 165
L K+ L L L +N+L S+P +L L L + N LT +P L
Sbjct: 65 AEL-TKLQV-DGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGAL 120
Query: 166 GNLTSLEVVSLAGNPFGGNIPDSL-GQLKELKTLGIGGNNLSGSIPPSIY-NLSFLVIFS 223
L L+ + L GN +P L +L+ L + NNL+ +P + L L
Sbjct: 121 RGLGELQELYLKGNEL-KTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLL 178
Query: 224 VSENQMHGSLPPSLGLYFPNLKL 246
+ EN ++ ++P F + L
Sbjct: 179 LQENSLY-TIPKGF---FGSHLL 197
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 69.4 bits (170), Expect = 4e-13
Identities = 48/211 (22%), Positives = 73/211 (34%), Gaps = 14/211 (6%)
Query: 317 ANCS-KLQVLSLGGNQFRGALPHSIANLSSQLQILVLGTNQLYGSIPSGIGNLVNLYSLQ 375
+ ++ ALP +L IL L N LY + + L L
Sbjct: 6 VSKVASHLEVNCDKRNLT-ALP---PDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLN 61
Query: 376 TEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLGDNNLSGVIPS 435
+ + T + G L L LD N +P L +L + + N L+ +
Sbjct: 62 LDRAELT-KLQ-VDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLG 118
Query: 436 SLGNLERLAILEMFANELSGTIPGDIF-NISSLSVSLDLAENHFVGSIPPRI-GNLKALR 493
+L L L L + NEL T+P + L L LA N+ +P + L+ L
Sbjct: 119 ALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEK-LSLANNNLT-ELPAGLLNGLENLD 175
Query: 494 CFDVSNNDLSGEIPSELGLCSSLEEIYLAEN 524
+ N L IP L +L N
Sbjct: 176 TLLLQENSLYT-IPKGFFGSHLLPFAFLHGN 205
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 59.3 bits (144), Expect = 9e-10
Identities = 49/258 (18%), Positives = 70/258 (27%), Gaps = 65/258 (25%)
Query: 99 LETLLLSDNSLVGKIPANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLT 158
+ +L +P +L T+L L N L + +L QL L LT
Sbjct: 12 HLEVNCDKRNL-TALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT 68
Query: 159 GGIPPFLGNLTSLEVVSLAGNPFGGNIPDSLGQLKELKTLGIGGNNLSGSIPPSIY-NLS 217
+ G L L + L+ N ++P L L L + N L+ S+P L
Sbjct: 69 -KLQVD-GTLPVLGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLG 124
Query: 218 FLVIFSVSENQMHGSLPPSLGLYFPNLKLFQTNENFFSGSIPISLSNASKLEYVEIASNS 277
L + N++ +LPP L
Sbjct: 125 ELQELYLKGNELK-TLPPGL---------------------------------------- 143
Query: 278 FFGKLSVNFGGMKNLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGALP 337
L L L NNL + L L L L N +P
Sbjct: 144 --------LTPTPKLEKLSLANNNLTELPA------GLLNGLENLDTLLLQENSLY-TIP 188
Query: 338 HSIANLSSQLQILVLGTN 355
L L N
Sbjct: 189 KGFFGSHL-LPFAFLHGN 205
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 55.1 bits (133), Expect = 2e-08
Identities = 37/130 (28%), Positives = 49/130 (37%), Gaps = 8/130 (6%)
Query: 55 DLRSKALSGLLSPQIGNLSFLREINLMNNTIQGEIPLE-FGRLRRLETLLLSDNSLVGKI 113
DL L L L L +++ N + +PL L L+ L L N L +
Sbjct: 83 DLSHNQLQSL-PLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELK-TL 139
Query: 114 PANL-SYCSRLTVLVLGNNKLVGSIPFE-FVSLYKLKQLALPMNNLTGGIPPFLGNLTSL 171
P L + +L L L NN L +P L L L L N+L IP L
Sbjct: 140 PPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLYT-IPKGFFGSHLL 197
Query: 172 EVVSLAGNPF 181
L GNP+
Sbjct: 198 PFAFLHGNPW 207
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 73.1 bits (180), Expect = 2e-14
Identities = 49/223 (21%), Positives = 78/223 (34%), Gaps = 15/223 (6%)
Query: 232 SLPPSLGLYFPNLKLFQTNENFFSGSIPISLSNASKLEYVEIASNSFFGKLSVN-FGGMK 290
++P + + + N S S L + + SN ++ F G+
Sbjct: 25 AVPVGI---PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVL-ARIDAAAFTGLA 80
Query: 291 NLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLSSQLQIL 350
L L L N +L L L + P L++ LQ L
Sbjct: 81 LLEQLDLSDNAQLRSVDPAT-----FHGLGRLHTLHLDRCGLQELGPGLFRGLAA-LQYL 134
Query: 351 VLGTNQLYGSIPSGI-GNLVNLYSLQTEENQFTGSIPKEM-GKLLNLQGLDFGGNHFSGE 408
L N L ++P +L NL L N+ + S+P+ L +L L N +
Sbjct: 135 YLQDNAL-QALPDDTFRDLGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRVAHV 192
Query: 409 IPSTLGNLSSLYEIFLGDNNLSGVIPSSLGNLERLAILEMFAN 451
P +L L ++L NNLS + +L L L L + N
Sbjct: 193 HPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 70.8 bits (174), Expect = 1e-13
Identities = 39/202 (19%), Positives = 74/202 (36%), Gaps = 11/202 (5%)
Query: 394 NLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLGDNNLSGVIPSSLGNLERLAILEMFANEL 453
Q + GN S ++ +L ++L N L+ + ++ L L L++ N
Sbjct: 33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92
Query: 454 SGTIPGDIF-NISSLSVSLDLAENHFVGSIPPRI-GNLKALRCFDVSNNDLSGEIPSE-L 510
++ F + L +L L + P + L AL+ + +N L +P +
Sbjct: 93 LRSVDPATFHGLGRL-HTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQ-ALPDDTF 149
Query: 511 GLCSSLEEIYLAENFFNGFIPSFFRTSRGIRKVDLSRNNFFGQIP--IFLEALSLEYLNL 568
+L ++L N + FR + ++ L +N + F + L L L
Sbjct: 150 RDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNR-VAHVHPHAFRDLGRLMTLYL 208
Query: 569 SFNDFEGRLPTRGIFANASAIS 590
N+ LP A A+
Sbjct: 209 FANNLS-ALP-TEALAPLRALQ 228
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 70.4 bits (173), Expect = 2e-13
Identities = 44/231 (19%), Positives = 80/231 (34%), Gaps = 16/231 (6%)
Query: 202 GNNLSGSIPPSIYNLSFLVIFSVSENQMHGSLPPSLGLYFPNLKLFQTNENFFSGSIPIS 261
L ++P I + + N++ +P + NL + + N + +
Sbjct: 20 QQGLQ-AVPVGI--PAASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARIDAAA 75
Query: 262 LSNASKLEYVEIASNSFFGKLSVN-FGGMKNLSYLILEYNNLGSGESDEMGFMNSLANCS 320
+ + LE ++++ N+ + F G+ L L L+ L +
Sbjct: 76 FTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPG------LFRGLA 129
Query: 321 KLQVLSLGGNQFRGALPHSIANLSSQLQILVLGTNQLYGSIPSGI-GNLVNLYSLQTEEN 379
LQ L L N + + +L L L L N++ S+P L +L L +N
Sbjct: 130 ALQYLYLQDNALQALPDDTFRDLG-NLTHLFLHGNRI-SSVPERAFRGLHSLDRLLLHQN 187
Query: 380 QFTGSIPKEM-GKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLGDNNL 429
+ + L L L N+ S L L +L + L DN
Sbjct: 188 RVA-HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW 237
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 66.2 bits (162), Expect = 4e-12
Identities = 51/210 (24%), Positives = 80/210 (38%), Gaps = 12/210 (5%)
Query: 75 LREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPAN-LSYCSRLTVLVLGNNKL 133
+ I L N I F R L L L N L +I A + + L L L +N
Sbjct: 34 SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVL-ARIDAAAFTGLALLEQLDLSDNAQ 92
Query: 134 VGSIPFE-FVSLYKLKQLALPMNNLTGGIPP-FLGNLTSLEVVSLAGNPFGGNIPD-SLG 190
+ S+ F L +L L L L + P L +L+ + L N +PD +
Sbjct: 93 LRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNAL-QALPDDTFR 150
Query: 191 QLKELKTLGIGGNNLSGSIPPSI-YNLSFLVIFSVSENQMHGSLPPSLGLYFPNLKLFQT 249
L L L + GN +S S+P L L + +N++ + P L
Sbjct: 151 DLGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRVA-HVHPHAFRDLGRLMTLYL 208
Query: 250 NENFFSGSIPIS-LSNASKLEYVEIASNSF 278
N S ++P L+ L+Y+ + N +
Sbjct: 209 FANNLS-ALPTEALAPLRALQYLRLNDNPW 237
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 65.4 bits (160), Expect = 8e-12
Identities = 45/224 (20%), Positives = 78/224 (34%), Gaps = 14/224 (6%)
Query: 113 IPANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTGGIPPFLGNLTSLE 172
+P + + + L N++ F + L L L N L L LE
Sbjct: 26 VPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLE 83
Query: 173 VVSLAGNPFGGNIP-DSLGQLKELKTLGIGGNNLSGSIPPSI-YNLSFLVIFSVSENQMH 230
+ L+ N ++ + L L TL + L + P + L+ L + +N +
Sbjct: 84 QLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQ 142
Query: 231 GSLPPSLGLYFPNLKLFQTNENFFSGSIPISLSNASKLEYVEIASNSFFGKLSVN-FGGM 289
+LP NL + N S + L+ + + N + + F +
Sbjct: 143 -ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRV-AHVHPHAFRDL 200
Query: 290 KNLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFR 333
L L L NNL + ++ +LA LQ L L N +
Sbjct: 201 GRLMTLYLFANNLSALPTE------ALAPLRALQYLRLNDNPWV 238
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 60.0 bits (146), Expect = 4e-10
Identities = 31/114 (27%), Positives = 50/114 (43%), Gaps = 6/114 (5%)
Query: 71 NLSFLREINLMNNTIQGEIPLE-FGRLRRLETLLLSDNSLVGKIPANLSYCSRLTVLVLG 129
L+ L+ + L +N +Q +P + F L L L L N + L L+L
Sbjct: 127 GLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLH 185
Query: 130 NNKLVGSIPFE-FVSLYKLKQLALPMNNLTGGIPP-FLGNLTSLEVVSLAGNPF 181
N++ + F L +L L L NNL+ +P L L +L+ + L NP+
Sbjct: 186 QNRVA-HVHPHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDNPW 237
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 69.7 bits (171), Expect = 3e-13
Identities = 42/244 (17%), Positives = 92/244 (37%), Gaps = 32/244 (13%)
Query: 285 NFGGMKNLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLS 344
+ L+ ++ + + + + + + S+ +
Sbjct: 19 SDDAFAETIKDNLKKKSVTD--------AVTQNELNSIDQIIANNSDIK-----SVQGIQ 65
Query: 345 S--QLQILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGG 402
+ L L N+L I + NL NL L +EN+ + + L L+ L
Sbjct: 66 YLPNVTKLFLNGNKL-TDI-KPLANLKNLGWLFLDENKVK-DL-SSLKDLKKLKSLSLEH 121
Query: 403 NHFSGEIPSTLGNLSSLYEIFLGDNNLSGVIPSSLGNLERLAILEMFANELSGTIPGDIF 462
N S +I L +L L ++LG+N ++ + + L L +L L + N++S DI
Sbjct: 122 NGIS-DING-LVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQIS-----DIV 172
Query: 463 NISSLS--VSLDLAENHFVGSIPPRIGNLKALRCFDVSNNDLSGEIPSELGLCSSLEEIY 520
++ L+ +L L++NH + + + LK L ++ + + + + +
Sbjct: 173 PLAGLTKLQNLYLSKNH-ISDLRA-LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVK 230
Query: 521 LAEN 524
+
Sbjct: 231 NTDG 234
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 63.1 bits (154), Expect = 4e-11
Identities = 56/281 (19%), Positives = 106/281 (37%), Gaps = 36/281 (12%)
Query: 189 LGQLKELKTLGIGGNNLSGSIPPSIYNLSFLVIFSVSENQMHGSLPPSLGLYFPNLKLFQ 248
E + +++ ++ + L+ + + + + S+ + Y PN+
Sbjct: 20 DDAFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIK-SVQG-IQ-YLPNVTKLF 74
Query: 249 TNENFFSGSIPISLSNASKLEYVEIASNSFFGKLS--VNFGGMKNLSYLILEYNNLGSGE 306
N N + I L+N L ++ + N K+ + +K L L LE+N +
Sbjct: 75 LNGNKLT-DIK-PLANLKNLGWLFLDEN----KVKDLSSLKDLKKLKSLSLEHNGISD-- 126
Query: 307 SDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLS--SQLQILVLGTNQLYGSIPSG 364
+N L + +L+ L LG N+ I LS ++L L L NQ+ S
Sbjct: 127 ------INGLVHLPQLESLYLGNNKIT-----DITVLSRLTKLDTLSLEDNQI--SDIVP 173
Query: 365 IGNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFL 424
+ L L +L +N + + + + L NL L+ + + NL +
Sbjct: 174 LAGLTKLQNLYLSKNHIS-DL-RALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKN 231
Query: 425 GDNNLSGVIP-SSLGNLERLAI---LEMFANELSGTIPGDI 461
D +L S G+ E+ + L F NE+S +
Sbjct: 232 TDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPV 272
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 61.2 bits (149), Expect = 2e-10
Identities = 48/234 (20%), Positives = 96/234 (41%), Gaps = 21/234 (8%)
Query: 71 NLSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLTVLVLGN 130
+ + NL ++ + L ++ ++ +++ + + + Y +T L L
Sbjct: 22 AFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIK-SVQ-GIQYLPNVTKLFLNG 77
Query: 131 NKLVGSIPFEFVSLYKLKQLALPMNNLTGGIPPFLGNLTSLEVVSLAGNPFGGNIPD--S 188
NKL P +L L L L N + + L +L L+ +SL N I D
Sbjct: 78 NKLTDIKPLA--NLKNLGWLFLDENKVK-DLSS-LKDLKKLKSLSLEHN----GISDING 129
Query: 189 LGQLKELKTLGIGGNNLSGSIPPSIYNLSFLVIFSVSENQMHGSLPPSLGLYFPNLKLFQ 248
L L +L++L +G N ++ I + L+ L S+ +NQ+ + P GL L+
Sbjct: 130 LVHLPQLESLYLGNNKIT-DITV-LSRLTKLDTLSLEDNQIS-DIVPLAGL--TKLQNLY 184
Query: 249 TNENFFSGSIPISLSNASKLEYVEIASNSFFGKLSVNFGGMKNLSYLILEYNNL 302
++N S + +L+ L+ +E+ S K + + + + +L
Sbjct: 185 LSKNHIS-DLR-ALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL 236
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 59.3 bits (144), Expect = 9e-10
Identities = 56/226 (24%), Positives = 91/226 (40%), Gaps = 21/226 (9%)
Query: 55 DLRSKALSGLLSPQIGNLSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIP 114
+L+ K+++ L+ + +I N+ I+ +++ L + L L+ N L I
Sbjct: 30 NLKKKSVTDA--VTQNELNSIDQIIANNSDIKSVQGIQY--LPNVTKLFLNGNKLT-DIK 84
Query: 115 ANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTGGIPPFLGNLTSLEVV 174
L+ L L L NK+ + L KLK L+L N ++ I L +L LE +
Sbjct: 85 -PLANLKNLGWLFLDENKVKDLSSLK--DLKKLKSLSLEHNGIS-DING-LVHLPQLESL 139
Query: 175 SLAGNPFGGNIPD--SLGQLKELKTLGIGGNNLSGSIPPSIYNLSFLVIFSVSENQMHGS 232
L N I D L +L +L TL + N +S I P + L+ L +S+N +
Sbjct: 140 YLGNN----KITDITVLSRLTKLDTLSLEDNQIS-DIVP-LAGLTKLQNLYLSKNHIS-D 192
Query: 233 LPPSLGLYFPNLKLFQTNENFFSGSIPISLSNASKLEYVEIASNSF 278
L GL NL + + SN V+ S
Sbjct: 193 LRALAGL--KNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL 236
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 52.0 bits (125), Expect = 2e-07
Identities = 37/183 (20%), Positives = 67/183 (36%), Gaps = 18/183 (9%)
Query: 391 KLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLGDNNLSGVIPSSLGNLERLAILEMFA 450
+ + T L+S+ +I ++++ V + L + L +
Sbjct: 22 AFAETIKDNLKKKSVTDA--VTQNELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNG 77
Query: 451 NELSGTIPGDIFNISSLS--VSLDLAENHFVGSIPPRIGNLKALRCFDVSNNDLSGEIPS 508
N+L+ DI +++L L L EN V + + +LK L+ + +N +S +I
Sbjct: 78 NKLT-----DIKPLANLKNLGWLFLDENK-VKDLSS-LKDLKKLKSLSLEHNGIS-DING 129
Query: 509 ELGLCSSLEEIYLAENFFNGFIPSFFRTSRGIRKVDLSRNNFFGQIPIFLEALSLEYLNL 568
L LE +YL N + + + L N I L+ L L
Sbjct: 130 -LVHLPQLESLYLGNN--KITDITVLSRLTKLDTLSLEDNQIS-DIVPLAGLTKLQNLYL 185
Query: 569 SFN 571
S N
Sbjct: 186 SKN 188
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 50.4 bits (121), Expect = 6e-07
Identities = 41/192 (21%), Positives = 73/192 (38%), Gaps = 16/192 (8%)
Query: 69 IGNLSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLTVLVL 128
+ +L L+ ++L +N I L L +LE+L L +N + LS ++L L L
Sbjct: 108 LKDLKKLKSLSLEHNGISDINGLV--HLPQLESLYLGNNKI--TDITVLSRLTKLDTLSL 163
Query: 129 GNNKLVGSIPFEFVSLYKLKQLALPMNNLTGGIPPFLGNLTSLEVVSLAGNPFGGNIPDS 188
+N++ I L KL+ L L N+++ + L L +L+V+ L +
Sbjct: 164 EDNQIS-DIVP-LAGLTKLQNLYLSKNHISD-LRA-LAGLKNLDVLELFSQECLNKPINH 219
Query: 189 LGQLKELKTLGIGGNNLSGSI--PPSIYNLSFLVIFSVSENQMHGSLPPSLGLYFPNLKL 246
L T+ N GS+ P I + +V + + F
Sbjct: 220 QSNLVVPNTV----KNTDGSLVTPEIISDDGDYEKPNVKWHLPE--FTNEVSFIFYQPVT 273
Query: 247 FQTNENFFSGSI 258
+ F G +
Sbjct: 274 IGKAKARFHGRV 285
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251 | Back alignment and structure |
|---|
Score = 67.4 bits (165), Expect = 1e-12
Identities = 50/155 (32%), Positives = 64/155 (41%), Gaps = 11/155 (7%)
Query: 275 SNSFFGKLSVNFGGMKNLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRG 334
S F G+ L++L L+YN L + + G + L L L L NQ
Sbjct: 44 STGLATLSDATFRGLTKLTWLNLDYNQLQTLSA---GVFDDLTE---LGTLGLANNQLA- 96
Query: 335 ALPHSIANLSSQLQILVLGTNQLYGSIPSGI-GNLVNLYSLQTEENQFTGSIPKEM-GKL 392
+LP + + +QL L LG NQL S+PSG+ L L L+ NQ SIP KL
Sbjct: 97 SLPLGVFDHLTQLDKLYLGGNQL-KSLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKL 154
Query: 393 LNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLGDN 427
NLQ L N L L I L N
Sbjct: 155 TNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251 | Back alignment and structure |
|---|
Score = 48.2 bits (115), Expect = 3e-06
Identities = 35/115 (30%), Positives = 50/115 (43%), Gaps = 10/115 (8%)
Query: 72 LSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPA----NLSYCSRLTVLV 127
L+ L + L NN + F L +L+ L L N L +P+ L+ +L L
Sbjct: 82 LTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLT---KLKELR 137
Query: 128 LGNNKLVGSIPFE-FVSLYKLKQLALPMNNLTGGIPPFLGNLTSLEVVSLAGNPF 181
L N+L SIP F L L+ L+L N L L L+ ++L GN F
Sbjct: 138 LNTNQL-QSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQF 191
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251 | Back alignment and structure |
|---|
Score = 44.3 bits (105), Expect = 5e-05
Identities = 50/160 (31%), Positives = 66/160 (41%), Gaps = 24/160 (15%)
Query: 100 ETLLLSDNSLVGKIPANLSYCSRLTVLVLGNNKLVGSIPFE-FVSLYKLKQLALPMNNLT 158
E L L L A ++LT L L N+L ++ F L +L L L N L
Sbjct: 38 EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLGLANNQLA 96
Query: 159 ---GGIPPFLGNLTSLEVVSLAGN-----PFGGNIPDSLGQLKELKTLGIGGNNLSGSIP 210
G+ L L L L GN P G + D L +LKE L + N L SIP
Sbjct: 97 SLPLGVFDHLTQLDKL---YLGGNQLKSLPSG--VFDRLTKLKE---LRLNTNQLQ-SIP 147
Query: 211 PSIYN-LSFLVIFSVSENQMHGSLPPSLGLYFPNLKLFQT 249
++ L+ L S+S NQ+ S+P F L QT
Sbjct: 148 AGAFDKLTNLQTLSLSTNQLQ-SVPHGA---FDRLGKLQT 183
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251 | Back alignment and structure |
|---|
Score = 43.5 bits (103), Expect = 9e-05
Identities = 48/173 (27%), Positives = 70/173 (40%), Gaps = 25/173 (14%)
Query: 113 IPANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTGGIPP--FLGNLTS 170
IPA+ L L + L F L KL L L N L + F LT
Sbjct: 33 IPADT------EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDD-LTE 84
Query: 171 LEVVSLAGN-----PFGGNIPDSLGQLKELKTLGIGGNNLSGSIPPSIY-NLSFLVIFSV 224
L + LA N P G + D L QL + L +GGN L S+P ++ L+ L +
Sbjct: 85 LGTLGLANNQLASLPLG--VFDHLTQLDK---LYLGGNQLK-SLPSGVFDRLTKLKELRL 138
Query: 225 SENQMHGSLPPSLGLYFPNLKLFQTNENFFSGSIPI-SLSNASKLEYVEIASN 276
+ NQ+ S+P NL+ + N S+P + KL+ + + N
Sbjct: 139 NTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQ-SVPHGAFDRLGKLQTITLFGN 189
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 66.9 bits (164), Expect = 2e-12
Identities = 52/207 (25%), Positives = 84/207 (40%), Gaps = 15/207 (7%)
Query: 55 DLRSKALSGLLSPQIGNLSFLREINLMNNTIQGEIPLE-FGRLRRLETLLLSDNSLVGKI 113
DL L L S + L+ ++L IQ I + L L TL+L+ N + +
Sbjct: 34 DLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPI-QSL 91
Query: 114 PANL-SYCSRLTVLVLGNNKLVGSIP-FEFVSLYKLKQLALPMNNLTGGIPP-FLGNLTS 170
S S L LV L S+ F L LK+L + N + P + NLT+
Sbjct: 92 ALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTN 150
Query: 171 LEVVSLAGNPFGGNIP----DSLGQLKELK-TLGIGGNNLSGSIPPSIYNLSFLVIFSVS 225
LE + L+ N +I L Q+ L +L + N ++ I P + L ++
Sbjct: 151 LEHLDLSSNKI-QSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLKELALD 208
Query: 226 ENQMHGSLPPSLGLYFPNLKLFQTNEN 252
NQ+ S+P + +L+ + N
Sbjct: 209 TNQLK-SVPDGIFDRLTSLQKIWLHTN 234
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 60.4 bits (147), Expect = 3e-10
Identities = 52/275 (18%), Positives = 86/275 (31%), Gaps = 72/275 (26%)
Query: 160 GIPPFLGNLTSLEVVSLAGNPFGGNIPDSLGQLKELKTLGIGGNNLSGSIPPSIY-NLSF 218
+P S + + L+ NP S EL+ L + + +I Y +LS
Sbjct: 25 NLP------FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSH 77
Query: 219 LVIFSVSENQMHGSLPPSLGLYFPNLKLFQTNENFFSGSIPISLSNASKLEYVEIASNSF 278
L ++ N + SL
Sbjct: 78 LSTLILTGNPIQ-SLALGA----------------------------------------- 95
Query: 279 FGKLSVNFGGMKNLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRG-ALP 337
F G+ +L L+ NL S E+ + + L+ L++ N + LP
Sbjct: 96 -------FSGLSSLQKLVAVETNLASLEN------FPIGHLKTLKELNVAHNLIQSFKLP 142
Query: 338 HSIANLSSQLQILVLGTNQLYGSIPSGI-GNLVNLYSLQTE----ENQFTGSIPKEMGKL 392
+NL+ L+ L L +N++ SI L + L N I K
Sbjct: 143 EYFSNLT-NLEHLDLSSNKI-QSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKE 199
Query: 393 LNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLGDN 427
+ L+ L N L+SL +I+L N
Sbjct: 200 IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 57.7 bits (140), Expect = 2e-09
Identities = 48/217 (22%), Positives = 79/217 (36%), Gaps = 15/217 (6%)
Query: 341 ANLSSQLQILVLGTNQLYGSIPSGI-GNLVNLYSLQTEENQFTGSIPKEM-GKLLNLQGL 398
NL + L L N L + S + L L + +I L +L L
Sbjct: 24 DNLPFSTKNLDLSFNPL-RHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTL 81
Query: 399 DFGGNHFSGEIPS-TLGNLSSLYEIFLGDNNLSGVIPSSLGNLERLAILEMFANELSGTI 457
GN + LSSL ++ + NL+ + +G+L+ L L + N +
Sbjct: 82 ILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFK 140
Query: 458 PGDIF-NISSLSVSLDLAENHFVGSIPPRI----GNLKALRC-FDVSNNDLSGEIPSELG 511
+ F N+++L LDL+ N SI + L D+S N ++ I
Sbjct: 141 LPEYFSNLTNLEH-LDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAF 197
Query: 512 LCSSLEEIYLAENFFNGFIPSFFRTSRGIRKVDLSRN 548
L+E+ L N F ++K+ L N
Sbjct: 198 KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 53.4 bits (129), Expect = 7e-08
Identities = 40/202 (19%), Positives = 74/202 (36%), Gaps = 18/202 (8%)
Query: 394 NLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLGDNNLSGVIPSSLGNLERLAILEMFANEL 453
+ + LD N + + L + L + + + +L L+ L + N +
Sbjct: 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88
Query: 454 SGTIPGDIFNISSLSVSLDLAENHFVGSIPPRI-GNLKALRCFDVSNNDLSGEIPSE--- 509
++ F+ S L E + S+ G+LK L+ +V++N +
Sbjct: 89 Q-SLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQ-SFKLPEYF 145
Query: 510 LGLCSSLEEIYLAENFFNGFIPSFFRT----SRGIRKVDLSRNNFFGQIP--IFLEALSL 563
L ++LE + L+ N + R +DLS N I F + + L
Sbjct: 146 SNL-TNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP-MNFIQPGAF-KEIRL 202
Query: 564 EYLNLSFNDFEGRLPTRGIFAN 585
+ L L N + +P GIF
Sbjct: 203 KELALDTNQLK-SVP-DGIFDR 222
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 49.6 bits (119), Expect = 1e-06
Identities = 41/137 (29%), Positives = 59/137 (43%), Gaps = 12/137 (8%)
Query: 53 TCDLRSKALSGLLSPQIGNLSFLREINLMNNTIQGEIPLE--FGRLRRLETLLLSDNSLV 110
L+ L + IG+L L+E+N+ +N IQ L F L LE L LS N +
Sbjct: 104 KLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ-SFKLPEYFSNLTNLEHLDLSSNKIQ 162
Query: 111 GKIPAN-LSYCSRLTV----LVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTGGIPP-F 164
I L ++ + L L N + I +LK+LAL N L +P
Sbjct: 163 -SIYCTDLRVLHQMPLLNLSLDLSLNPM-NFIQPGAFKEIRLKELALDTNQLKS-VPDGI 219
Query: 165 LGNLTSLEVVSLAGNPF 181
LTSL+ + L NP+
Sbjct: 220 FDRLTSLQKIWLHTNPW 236
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 65.6 bits (160), Expect = 1e-11
Identities = 42/202 (20%), Positives = 73/202 (36%), Gaps = 18/202 (8%)
Query: 394 NLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLGDNNLSGVIP----SSLGNLERLAILEMF 449
N L F L +I + N++ VI S+L L + I +
Sbjct: 31 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK-- 88
Query: 450 ANELSGTIPGDIF-NISSLSVSLDLAENHFVGSIPPRI-GNLKALRCFDVSNNDLSGEIP 507
AN L I + F N+ +L L ++ +P + D+ +N I
Sbjct: 89 ANNLL-YINPEAFQNLPNL-QYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIE 145
Query: 508 SEL--GLCSSLEEIYLAENFFNGFIPSFFRTSRGIRKVDLSRNNFFGQIP--IFLEALSL 563
GL ++L +N S F ++ + +++LS NN ++P +F A
Sbjct: 146 RNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQ-LDELNLSDNNNLEELPNDVFHGASGP 204
Query: 564 EYLNLSFNDFEGRLPTRGIFAN 585
L++S LP+ N
Sbjct: 205 VILDISRTRIH-SLPS-YGLEN 224
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 63.3 bits (154), Expect = 6e-11
Identities = 38/238 (15%), Positives = 84/238 (35%), Gaps = 14/238 (5%)
Query: 341 ANLSSQLQILVLGTNQLYGSIPSGI-GNLVNLYSLQTEENQFTGSIPKEM-GKLLNLQGL 398
++L L +L I G +L ++ +N I ++ L L +
Sbjct: 26 SDLPRNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEI 84
Query: 399 DF-GGNHFSGEIPSTLGNLSSLYEIFLGDNNLSGVIPSSLGNLERLAILEMFANELSGTI 457
N+ P NL +L + + + + + + + +L++ N TI
Sbjct: 85 RIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTI 144
Query: 458 PGDIF-NISSLSVSLDLAENHFVGSIPPRI-GNLKALRCFDVSNNDLSGEIPSEL--GLC 513
+ F +S SV L L +N I + NN+L E+P+++ G
Sbjct: 145 ERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLE-ELPNDVFHGA- 201
Query: 514 SSLEEIYLAENFFNGFIPSFFRTSRGIRKVDLSRNNFFGQIPIFLEALSLEYLNLSFN 571
S + ++ + ++K+ ++P + ++L +L++
Sbjct: 202 SGPVILDISRTRIHSLPSYGLE---NLKKLRARSTYNLKKLPTLEKLVALMEASLTYP 256
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 59.8 bits (145), Expect = 9e-10
Identities = 34/220 (15%), Positives = 67/220 (30%), Gaps = 18/220 (8%)
Query: 286 FGGMKNLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSL-GGNQFRGALPHSIANLS 344
F G +L + + N++ + +N KL + + N P + NL
Sbjct: 50 FSGFGDLEKIEISQNDVLEVIEA-----DVFSNLPKLHEIRIEKANNLLYINPEAFQNLP 104
Query: 345 SQLQILVLGTNQLYGSIPSGI-GNLVNLYSLQTEENQFTGSIPKEM--GKLLNLQGLDFG 401
+ LQ L++ + +P + + L ++N +I + G L
Sbjct: 105 N-LQYLLISNTGI-KHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLN 162
Query: 402 GNHFSGEIPSTLGNLSSLYEIFLGDNNLSGVIPSSLGNLERLAILEMFANELSGTIPGDI 461
N S +NNL + IL++ + ++P
Sbjct: 163 KNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSYG 221
Query: 462 F-NISSLSVSLDLAENHFVGSIPPRIGNLKALRCFDVSNN 500
N+ L + P + L AL ++
Sbjct: 222 LENLKKLRA-RSTYNLKKL----PTLEKLVALMEASLTYP 256
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 59.5 bits (144), Expect = 1e-09
Identities = 42/261 (16%), Positives = 78/261 (29%), Gaps = 40/261 (15%)
Query: 47 CEWEGITCDLRSKALSGLLSPQIGNLSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSD 106
C + ++ + P E+ + ++ F LE + +S
Sbjct: 7 CHCSNRVFLCQESKVTEI--PS-DLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQ 63
Query: 107 NSLVGKIPAN--------------------------LSYCSRLTVLVLGNNKLVGSIP-F 139
N ++ I A+ L L++ N + +P
Sbjct: 64 NDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDV 122
Query: 140 EFVSLYKLKQLALPMNNLTGGIPP--FLGNLTSLEVVSLAGNPFGGNIPDSLGQLKELKT 197
+ + L + N I F+G ++ L N I +S +L
Sbjct: 123 HKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGI-QEIHNSAFNGTQLDE 181
Query: 198 LGIGGNNLSGSIPPSI-YNLSFLVIFSVSENQMHGSLPPSLGLYFPNLKLFQTNENFFSG 256
L + NN +P + + S VI +S ++H SLP L+ T
Sbjct: 182 LNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSYGLENLKKLRARSTYNLK--- 237
Query: 257 SIPISLSNASKLEYVEIASNS 277
+P +L L + S
Sbjct: 238 KLP-TLEKLVALMEASLTYPS 257
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 64.3 bits (157), Expect = 1e-11
Identities = 29/189 (15%), Positives = 73/189 (38%), Gaps = 12/189 (6%)
Query: 53 TCDLRSKALSGLLSPQIGNLSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGK 112
+ K + + P + + + L+ ++ F L + + +S + + +
Sbjct: 15 DFRVTCKDIQRI--PSL--PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQ 70
Query: 113 IPANL-SYCSRLTVLVLGNNKLVGSIPFE-FVSLYKLKQLALPMNNLTGGIPP--FLGNL 168
+ ++ S++T + + N + + I + L LK L + L P + +
Sbjct: 71 LESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYST 129
Query: 169 TSLEVVSLAGNPFGGNIPDSL--GQLKELKTLGIGGNNLSGSIPPSIYNLSFLVIFSVSE 226
++ + NP+ +IP + G E TL + N + S+ +N + L +++
Sbjct: 130 DIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNK 188
Query: 227 NQMHGSLPP 235
N+ +
Sbjct: 189 NKYLTVIDK 197
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 60.8 bits (148), Expect = 1e-10
Identities = 28/191 (14%), Positives = 63/191 (32%), Gaps = 11/191 (5%)
Query: 261 SLSNASKLEYVEIASNSFFGKLSVN-FGGMKNLSYLILEYNNLGSGESDEMGFMNSLANC 319
+ SN + + ++ + +L + F + ++++ + + + L
Sbjct: 50 AFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDA-----LKEL 104
Query: 320 SKLQVLSLGGNQFRGALPHSIANLSSQLQILVLGTNQLYGSIPSGI-GNLVN-LYSLQTE 377
L+ L + + + + IL + N SIP L N +L+
Sbjct: 105 PLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLY 164
Query: 378 ENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIPSTL--GNLSSLYEIFLGDNNLSGVIPS 435
N FT S+ L + N + I G S + + +++ +
Sbjct: 165 NNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK 223
Query: 436 SLGNLERLAIL 446
L +L+ L
Sbjct: 224 GLEHLKELIAR 234
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 52.7 bits (127), Expect = 7e-08
Identities = 48/259 (18%), Positives = 85/259 (32%), Gaps = 59/259 (22%)
Query: 319 CSKLQVLSLGGNQFRGALPHSIANLSSQLQILVLGTNQLYGSIPSGIGNLVNLYSLQTEE 378
C + + + + I +L Q L L L +IPS
Sbjct: 10 CHQEEDFRVTCKDIQ-----RIPSLPPSTQTLKLIETHL-RTIPSH-------------- 49
Query: 379 NQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIPS-TLGNLSSLYEIFLGDNN-LSGVIPSS 436
F+ L N+ + + ++ S + NLS + I + + L+ + P +
Sbjct: 50 -AFSN--------LPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDA 100
Query: 437 LGNLERLAILEMFANELSGTIPGDIF-NISSLSVSLDLAENHFVGSIPPRIGNLKALRCF 495
L L L L +F L P + + L++ +N ++ SIP F
Sbjct: 101 LKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSIPVNA--------F 151
Query: 496 DVSNNDLSGEIPSELGLCSSLEEIYLAENFFNGFIPSFFRTSRGIRKVDLSRNNFFGQIP 555
GLC+ + L N F F ++ + V L++N + I
Sbjct: 152 Q--------------GLCNETLTLKLYNNGFTSVQGYAFNGTK-LDAVYLNKNKYLTVID 196
Query: 556 --IFLEALS-LEYLNLSFN 571
F S L++S
Sbjct: 197 KDAFGGVYSGPSLLDVSQT 215
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 63.8 bits (156), Expect = 2e-11
Identities = 45/166 (27%), Positives = 69/166 (41%), Gaps = 15/166 (9%)
Query: 266 SKLEYVEIASNSFFGKLSVN-FGGMKNLSYLILEYNNLGSGESDEMGFMNSLANCSKLQV 324
+KL + + N L F +KNL L + N L + G + L L
Sbjct: 61 TKLRLLYLNDNKL-QTLPAGIFKELKNLETLWVTDNKLQALPI---GVFDQL---VNLAE 113
Query: 325 LSLGGNQFRGALPHSI-ANLSSQLQILVLGTNQLYGSIPSGI-GNLVNLYSLQTEENQFT 382
L L NQ + +LP + +L+ +L L LG N+L S+P G+ L +L L+ NQ
Sbjct: 114 LRLDRNQLK-SLPPRVFDSLT-KLTYLSLGYNEL-QSLPKGVFDKLTSLKELRLYNNQLK 170
Query: 383 GSIPKEM-GKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLGDN 427
+P+ KL L+ L N +L L + L +N
Sbjct: 171 -RVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 59.2 bits (144), Expect = 6e-10
Identities = 53/184 (28%), Positives = 83/184 (45%), Gaps = 13/184 (7%)
Query: 75 LREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPANL-SYCSRLTVLVLGNNKL 133
++++L +N + F RL +L L L+DN L +PA + L L + +NKL
Sbjct: 39 TKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKL 97
Query: 134 VGSIPFE-FVSLYKLKQLALPMNNLTGGIPP--FLGNLTSLEVVSLAGNPFGGNIPDSL- 189
++P F L L +L L N L +PP F +LT L +SL N ++P +
Sbjct: 98 Q-ALPIGVFDQLVNLAELRLDRNQLK-SLPPRVF-DSLTKLTYLSLGYNEL-QSLPKGVF 153
Query: 190 GQLKELKTLGIGGNNLSGSIPPSIY-NLSFLVIFSVSENQMHGSLPPSLGLYFPNLKLFQ 248
+L LK L + N L +P + L+ L + NQ+ +P LK+ Q
Sbjct: 154 DKLTSLKELRLYNNQLK-RVPEGAFDKLTELKTLKLDNNQLK-RVPEGAFDSLEKLKMLQ 211
Query: 249 TNEN 252
EN
Sbjct: 212 LQEN 215
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 52.3 bits (126), Expect = 1e-07
Identities = 51/195 (26%), Positives = 83/195 (42%), Gaps = 21/195 (10%)
Query: 113 IPANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTGGIPP--FLGNLTS 170
IPA+ L L +NKL F L KL+ L L N L +P F L +
Sbjct: 35 IPADT------KKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKE-LKN 86
Query: 171 LEVVSLAGNPFGGNIPDSL-GQLKELKTLGIGGNNLSGSIPPSIY-NLSFLVIFSVSENQ 228
LE + + N +P + QL L L + N L S+PP ++ +L+ L S+ N+
Sbjct: 87 LETLWVTDNKL-QALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNE 144
Query: 229 MHGSLPPSL--GLYFPNLKLFQTNENFFSGSIPISL-SNASKLEYVEIASNSFFGKLSVN 285
+ SLP + L +LK + N +P ++L+ +++ +N
Sbjct: 145 LQ-SLPKGVFDKL--TSLKELRLYNNQLK-RVPEGAFDKLTELKTLKLDNNQLKRVPEGA 200
Query: 286 FGGMKNLSYLILEYN 300
F ++ L L L+ N
Sbjct: 201 FDSLEKLKMLQLQEN 215
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 50.7 bits (122), Expect = 4e-07
Identities = 34/114 (29%), Positives = 50/114 (43%), Gaps = 6/114 (5%)
Query: 71 NLSFLREINLMNNTIQGEIPLE-FGRLRRLETLLLSDNSLVGKIPANL-SYCSRLTVLVL 128
L L E+ L N ++ +P F L +L L L N L +P + + L L L
Sbjct: 107 QLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKELRL 164
Query: 129 GNNKLVGSIPFE-FVSLYKLKQLALPMNNLTGGIPPFLGNLTSLEVVSLAGNPF 181
NN+L +P F L +LK L L N L +L L+++ L NP+
Sbjct: 165 YNNQL-KRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPW 217
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 48.8 bits (117), Expect = 2e-06
Identities = 44/183 (24%), Positives = 72/183 (39%), Gaps = 10/183 (5%)
Query: 394 NLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLGDNNLSGVIPSSLGNLERLAILEMFANEL 453
+ + LD N S L+ L ++L DN L + L+ L L + N+L
Sbjct: 38 DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKL 97
Query: 454 SGTIPGDIFNISSLSVSLDLAENHFVGSIPPRI-GNLKALRCFDVSNNDLSGEIPSEL-- 510
+P +F+ L L N S+PPR+ +L L + N+L +P +
Sbjct: 98 Q-ALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFD 154
Query: 511 GLCSSLEEIYLAENFFNGFIPSFFRTSRGIRKVDLSRNNFFGQIP--IFLEALSLEYLNL 568
L +SL+E+ L N F ++ + L N ++P F L+ L L
Sbjct: 155 KL-TSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQ-LKRVPEGAFDSLEKLKMLQL 212
Query: 569 SFN 571
N
Sbjct: 213 QEN 215
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 46.5 bits (111), Expect = 1e-05
Identities = 44/194 (22%), Positives = 81/194 (41%), Gaps = 13/194 (6%)
Query: 360 SIPSGIGNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIPSTL-GNLSS 418
+IPS I + L + N+ + K +L L+ L N +P+ + L +
Sbjct: 30 AIPSNI--PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKN 86
Query: 419 LYEIFLGDNNLSGVIPSSLGNLERLAILEMFANELSGTIPGDIF-NISSLSVSLDLAENH 477
L +++ DN L + L LA L + N+L ++P +F +++ L+ L L N
Sbjct: 87 LETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLT-YLSLGYNE 144
Query: 478 FVGSIPPRI-GNLKALRCFDVSNNDLSGEIPSEL--GLCSSLEEIYLAENFFNGFIPSFF 534
S+P + L +L+ + NN L +P L + L+ + L N F
Sbjct: 145 LQ-SLPKGVFDKLTSLKELRLYNNQLK-RVPEGAFDKL-TELKTLKLDNNQLKRVPEGAF 201
Query: 535 RTSRGIRKVDLSRN 548
+ ++ + L N
Sbjct: 202 DSLEKLKMLQLQEN 215
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272 | Back alignment and structure |
|---|
Score = 63.1 bits (154), Expect = 3e-11
Identities = 53/199 (26%), Positives = 81/199 (40%), Gaps = 19/199 (9%)
Query: 232 SLPPSLGLYFPNLKLFQTNENFFSGSIPISLSNASKLEYVEIASNSFFGKLSVNFGGMKN 291
L + + ++ I + Y+ + N +S + N
Sbjct: 33 DAVTQNELNSIDQIIANNSDIKSVQGIQY----LPNVRYLALGGNKL-HDISA-LKELTN 86
Query: 292 LSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLSSQLQILV 351
L+YLIL N L S + G + L + L+ L L NQ + +LP + + + L L
Sbjct: 87 LTYLILTGNQLQSLPN---GVFDKL---TNLKELVLVENQLQ-SLPDGVFDKLTNLTYLN 139
Query: 352 LGTNQLYGSIPSGI-GNLVNLYSLQTEENQFTGSIPKEM-GKLLNLQGLDFGGNHFSGEI 409
L NQL S+P G+ L NL L NQ S+P+ + KL L+ L N +
Sbjct: 140 LAHNQL-QSLPKGVFDKLTNLTELDLSYNQLQ-SLPEGVFDKLTQLKDLRLYQNQLKS-V 196
Query: 410 PS-TLGNLSSLYEIFLGDN 427
P L+SL I+L DN
Sbjct: 197 PDGVFDRLTSLQYIWLHDN 215
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 4e-05
Identities = 43/133 (32%), Positives = 59/133 (44%), Gaps = 14/133 (10%)
Query: 55 DLRSKALSGLLSPQIGNLSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIP 114
L L L + L+ L+E+ L+ N +Q F +L L L L+ N L +P
Sbjct: 91 ILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQ-SLP 149
Query: 115 A----NLSYCSRLTVLVLGNNKLVGSIPFE-FVSLYKLKQLALPMNNLTGGIP--PFLGN 167
L+ LT L L N+L S+P F L +LK L L N L +P F
Sbjct: 150 KGVFDKLT---NLTELDLSYNQL-QSLPEGVFDKLTQLKDLRLYQNQLKS-VPDGVF-DR 203
Query: 168 LTSLEVVSLAGNP 180
LTSL+ + L NP
Sbjct: 204 LTSLQYIWLHDNP 216
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 63.7 bits (155), Expect = 5e-11
Identities = 33/151 (21%), Positives = 57/151 (37%), Gaps = 16/151 (10%)
Query: 286 FGGMKNLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLSS 345
+ NL L+L +N+L S+ + L+ L L N ++L
Sbjct: 60 PTRLTNLHSLLLSHNHLNFISSE------AFVPVPNLRYLDLSSNHLHTLDEFLFSDL-Q 112
Query: 346 QLQILVLGTNQLYGSIPSGI-GNLVNLYSLQTEENQFTGSIPKE----MGKLLNLQGLDF 400
L++L+L N + + ++ L L +NQ + P E KL L LD
Sbjct: 113 ALEVLLLYNNHI-VVVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDL 170
Query: 401 GGNHFSGEIPSTLGNLSSLYE--IFLGDNNL 429
N + L L + + ++L +N L
Sbjct: 171 SSNKLKKLPLTDLQKLPAWVKNGLYLHNNPL 201
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 61.4 bits (149), Expect = 3e-10
Identities = 40/189 (21%), Positives = 68/189 (35%), Gaps = 19/189 (10%)
Query: 47 CEWEGITCDLRSKALSGLLSPQIGNLS-FLREINLMNNTIQGEIPLE--FGRLRRLETLL 103
C + L + PQ +L + ++L +N + + E RL L +LL
Sbjct: 16 CLCASNILSCSKQQLPNV--PQ--SLPSYTALLDLSHNNLS-RLRAEWTPTRLTNLHSLL 70
Query: 104 LSDNSLVGKIPAN-LSYCSRLTVLVLGNNKLVGSIPFE-FVSLYKLKQLALPMNNLTGGI 161
LS N L I + L L L +N L ++ F L L+ L L N++ +
Sbjct: 71 LSHNHL-NFISSEAFVPVPNLRYLDLSSNHLH-TLDEFLFSDLQALEVLLLYNNHIV-VV 127
Query: 162 PPF-LGNLTSLEVVSLAGNPFGGNIP----DSLGQLKELKTLGIGGNNLSGSIPPSIYNL 216
++ L+ + L+ N P +L +L L + N L + L
Sbjct: 128 DRNAFEDMAQLQKLYLSQNQI-SRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKL 186
Query: 217 SFLVIFSVS 225
V +
Sbjct: 187 PAWVKNGLY 195
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 58.7 bits (142), Expect = 2e-09
Identities = 37/168 (22%), Positives = 68/168 (40%), Gaps = 11/168 (6%)
Query: 341 ANLSSQLQILVLGTNQLYGSIPSGI--GNLVNLYSLQTEENQFTGSIPKEM-GKLLNLQG 397
+L S +L L N L + + L NL+SL N I E + NL+
Sbjct: 35 QSLPSYTALLDLSHNNL-SRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRY 92
Query: 398 LDFGGNHFSGEIPS-TLGNLSSLYEIFLGDNNLSGVIPSSLGNLERLAILEMFANELSGT 456
LD NH + +L +L + L +N++ V ++ ++ +L L + N++S
Sbjct: 93 LDLSSNHLH-TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS-R 150
Query: 457 IPGDIF-NISSLSV--SLDLAENHFVGSIPPRIGNLKALRCFDVSNND 501
P ++ + + L LDL+ N + L A + ++
Sbjct: 151 FPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHN 198
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 61.6 bits (150), Expect = 6e-11
Identities = 28/135 (20%), Positives = 45/135 (33%), Gaps = 11/135 (8%)
Query: 295 LILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLSSQLQILVLGT 354
+ LE N + + + KL+ + L NQ L L LVL
Sbjct: 37 IRLEQNTIKVIPP------GAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYG 89
Query: 355 NQLYGSIPSGI-GNLVNLYSLQTEENQFTGSIPKEM-GKLLNLQGLDFGGNHFSGEIPST 412
N++ +P + L +L L N+ + + L NL L N T
Sbjct: 90 NKI-TELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQTIAKGT 147
Query: 413 LGNLSSLYEIFLGDN 427
L ++ + L N
Sbjct: 148 FSPLRAIQTMHLAQN 162
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 59.7 bits (145), Expect = 3e-10
Identities = 35/114 (30%), Positives = 55/114 (48%), Gaps = 6/114 (5%)
Query: 71 NLSFLREINLMNNTIQGEIPLE-FGRLRRLETLLLSDNSLVGKIPANL-SYCSRLTVLVL 128
LR I+L NN I E+ + F LR L +L+L N + ++P +L L +L+L
Sbjct: 54 PYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKIT-ELPKSLFEGLFSLQLLLL 111
Query: 129 GNNKLVGSIPFE-FVSLYKLKQLALPMNNLTGGIPPFLGNLTSLEVVSLAGNPF 181
NK+ + + F L+ L L+L N L L +++ + LA NPF
Sbjct: 112 NANKIN-CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 57.4 bits (139), Expect = 2e-09
Identities = 33/131 (25%), Positives = 58/131 (44%), Gaps = 6/131 (4%)
Query: 76 REINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPANL-SYCSRLTVLVLGNNKLV 134
EI L NTI+ P F ++L + LS+N + ++ + L LVL NK+
Sbjct: 35 TEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKIT 93
Query: 135 GSIPFE-FVSLYKLKQLALPMNNLTGGIPPFL-GNLTSLEVVSLAGNPFGGNIPDSLGQL 192
+P F L+ L+ L L N + + +L +L ++SL N + L
Sbjct: 94 -ELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPL 151
Query: 193 KELKTLGIGGN 203
+ ++T+ + N
Sbjct: 152 RAIQTMHLAQN 162
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 53.1 bits (128), Expect = 5e-08
Identities = 30/122 (24%), Positives = 46/122 (37%), Gaps = 11/122 (9%)
Query: 286 FGGMKNLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLSS 345
F K L + L N + L + L L L GN+ LP S+
Sbjct: 52 FSPYKKLRRIDLSNNQISELAP---DAFQGLRS---LNSLVLYGNKIT-ELPKSLFEGLF 104
Query: 346 QLQILVLGTNQLYGSIPSGI-GNLVNLYSLQTEENQFTGSIPKEM-GKLLNLQGLDFGGN 403
LQ+L+L N++ + +L NL L +N+ +I K L +Q + N
Sbjct: 105 SLQLLLLNANKI-NCLRVDAFQDLHNLNLLSLYDNKLQ-TIAKGTFSPLRAIQTMHLAQN 162
Query: 404 HF 405
F
Sbjct: 163 PF 164
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 52.3 bits (126), Expect = 9e-08
Identities = 32/157 (20%), Positives = 58/157 (36%), Gaps = 28/157 (17%)
Query: 323 QVLSLGGNQFRGALPHSIANLSSQLQILVLGTNQLYGSIPSGI-GNLVNLYSLQTEENQF 381
+ L N + P + + +L+ + L NQ+ + L +L SL N+
Sbjct: 35 TEIRLEQNTIKVIPPGAFSPYK-KLRRIDLSNNQI-SELAPDAFQGLRSLNSLVLYGNKI 92
Query: 382 TGSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLGDNNLSGVIPSSLGNLE 441
T +P S L SL + L N ++ + + +L
Sbjct: 93 T-ELP-----------------------KSLFEGLFSLQLLLLNANKINCLRVDAFQDLH 128
Query: 442 RLAILEMFANELSGTIPGDIFNISSLSVSLDLAENHF 478
L +L ++ N+L TI F+ ++ LA+N F
Sbjct: 129 NLNLLSLYDNKLQ-TIAKGTFSPLRAIQTMHLAQNPF 164
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 48.5 bits (116), Expect = 2e-06
Identities = 35/167 (20%), Positives = 63/167 (37%), Gaps = 29/167 (17%)
Query: 113 IPANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTGGIPPFLGNLTSLE 172
IP NL +T + L N + P F KL+++ L N ++ L
Sbjct: 26 IPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-----------ELA 72
Query: 173 VVSLAGNPFGGNIPDSLGQLKELKTLGIGGNNLSGSIPPSI-YNLSFLVIFSVSENQMHG 231
PD+ L+ L +L + GN ++ +P S+ L L + ++ N+++
Sbjct: 73 -------------PDAFQGLRSLNSLVLYGNKIT-ELPKSLFEGLFSLQLLLLNANKIN- 117
Query: 232 SLPPSLGLYFPNLKLFQTNENFFSGSIPISLSNASKLEYVEIASNSF 278
L NL L +N + S ++ + +A N F
Sbjct: 118 CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 46.9 bits (112), Expect = 5e-06
Identities = 26/133 (19%), Positives = 52/133 (39%), Gaps = 5/133 (3%)
Query: 394 NLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLGDNNLSGVIPSSLGNLERLAILEMFANEL 453
+ + N P L I L +N +S + P + L L L ++ N++
Sbjct: 33 TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI 92
Query: 454 SGTIPGDIF-NISSLSVSLDLAENHFVGSIPPRI-GNLKALRCFDVSNNDLSGEIPSELG 511
+ +P +F + SL + L L N + + +L L + +N L
Sbjct: 93 T-ELPKSLFEGLFSLQL-LLLNANK-INCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFS 149
Query: 512 LCSSLEEIYLAEN 524
+++ ++LA+N
Sbjct: 150 PLRAIQTMHLAQN 162
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220 | Back alignment and structure |
|---|
Score = 60.1 bits (146), Expect = 2e-10
Identities = 34/131 (25%), Positives = 57/131 (43%), Gaps = 7/131 (5%)
Query: 55 DLRSKALSGLLSPQI-GNLSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKI 113
L + + L + I L LR+IN NN I F + +LL+ N L +
Sbjct: 38 RLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLEN-V 96
Query: 114 PANL-SYCSRLTVLVLGNNKLVGSIPFE-FVSLYKLKQLALPMNNLTGGIPP-FLGNLTS 170
+ L L+L +N++ + + F+ L ++ L+L N +T + P L S
Sbjct: 97 QHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDNQITT-VAPGAFDTLHS 154
Query: 171 LEVVSLAGNPF 181
L ++L NPF
Sbjct: 155 LSTLNLLANPF 165
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220 | Back alignment and structure |
|---|
Score = 57.4 bits (139), Expect = 2e-09
Identities = 29/131 (22%), Positives = 51/131 (38%), Gaps = 4/131 (3%)
Query: 323 QVLSLGGNQFRGALPHSIANLSSQLQILVLGTNQLYGSIPSGI-GNLVNLYSLQTEENQF 381
L L N+F I QL+ + N++ I G + + N+
Sbjct: 35 AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKI-TDIEEGAFEGASGVNEILLTSNRL 93
Query: 382 TGSIPKEM-GKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLGDNNLSGVIPSSLGNL 440
++ +M L +L+ L N + + LSS+ + L DN ++ V P + L
Sbjct: 94 E-NVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTL 152
Query: 441 ERLAILEMFAN 451
L+ L + AN
Sbjct: 153 HSLSTLNLLAN 163
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 3e-05
Identities = 20/97 (20%), Positives = 38/97 (39%), Gaps = 9/97 (9%)
Query: 286 FGGMKNLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLSS 345
F G ++ ++L N L + + L+ L L N+ + + S
Sbjct: 77 FEGASGVNEILLTSNRLENVQH------KMFKGLESLKTLMLRSNRIT-CVGNDSFIGLS 129
Query: 346 QLQILVLGTNQLYGSIPSGI-GNLVNLYSLQTEENQF 381
+++L L NQ+ ++ G L +L +L N F
Sbjct: 130 SVRLLSLYDNQI-TTVAPGAFDTLHSLSTLNLLANPF 165
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 9e-05
Identities = 22/170 (12%), Positives = 55/170 (32%), Gaps = 34/170 (20%)
Query: 113 IPANLSYCSRLTVLVLGNNKLVGSIPFE--FVSLYKLKQLALPMNNLTGGIPPFLGNLTS 170
IP ++ L L NN+ + F L +L+++ N +T
Sbjct: 26 IPEHIP--QYTAELRLNNNEFT-VLEATGIFKKLPQLRKINFSNNKIT-----------D 71
Query: 171 LEVVSLAGNPFGGNIPDSLGQLKELKTLGIGGNNLSGSIPPSI-YNLSFLVIFSVSENQM 229
+E + + + + N L ++ + L L + N++
Sbjct: 72 IE-------------EGAFEGASGVNEILLTSNRLE-NVQHKMFKGLESLKTLMLRSNRI 117
Query: 230 HGSLPPSLGLYFPNLKLFQTNENFFSGSIPI-SLSNASKLEYVEIASNSF 278
+ + +++L +N + ++ + L + + +N F
Sbjct: 118 T-CVGNDSFIGLSSVRLLSLYDNQIT-TVAPGAFDTLHSLSTLNLLANPF 165
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 9e-05
Identities = 34/143 (23%), Positives = 53/143 (37%), Gaps = 6/143 (4%)
Query: 360 SIPSGIGNLVNLYSLQTEENQFTGSIPKEM-GKLLNLQGLDFGGNHFSGEIPSTLGNLSS 418
IP I L+ N+FT + KL L+ ++F N + S
Sbjct: 25 KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASG 82
Query: 419 LYEIFLGDNNLSGVIPSSLGNLERLAILEMFANELSGTIPGDIFNISSLSVSLDLAENHF 478
+ EI L N L V LE L L + +N ++ + D F S L L +N
Sbjct: 83 VNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDNQI 141
Query: 479 VGSIPPRI-GNLKALRCFDVSNN 500
++ P L +L ++ N
Sbjct: 142 T-TVAPGAFDTLHSLSTLNLLAN 163
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 62.5 bits (151), Expect = 2e-10
Identities = 32/122 (26%), Positives = 53/122 (43%), Gaps = 9/122 (7%)
Query: 76 REINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLTVLVLGNNKLVG 135
R ++L + + LE +L + L LS N L +P L+ L VL +N L
Sbjct: 444 RVLHLAHKDLTVLCHLE--QLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE- 499
Query: 136 SIPFEFVSLYKLKQLALPMNNLTG--GIPPFLGNLTSLEVVSLAGNPFGGNIPDSLGQLK 193
++ +L +L++L L N L I P L + L +++L GN +L
Sbjct: 500 NVD-GVANLPRLQELLLCNNRLQQSAAIQP-LVSCPRLVLLNLQGNSL-CQEEGIQERLA 556
Query: 194 EL 195
E+
Sbjct: 557 EM 558
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 59.8 bits (144), Expect = 1e-09
Identities = 48/361 (13%), Positives = 114/361 (31%), Gaps = 65/361 (18%)
Query: 12 AAFEEGDLAALQAFKSMISHDPQGILNSWNDSRHFCEWEGITCDLRSKAL------SGLL 65
+ EE L+ + + +L +++ EW R + + L
Sbjct: 250 VSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPDGRNRPSHVWLCDLPAASL 309
Query: 66 SPQIGNLSFLREINLMNNTIQGEI--------PLEFGRLRRLETLLLSDNSLVGKIPANL 117
+ Q+ +F ++ + + + +L LS + + L
Sbjct: 310 NDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQLFRCELSVEKST-VLQSEL 368
Query: 118 SYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTGGIPPFLGNLTSLEVVSLA 177
C L L N + +I + L L L + L +++ + A
Sbjct: 369 ESCKELQELEPENKWCLLTIILL---MRALDPLLYEKETLQ-----YFSTLKAVDPMRAA 420
Query: 178 G-----NPFGGNIPDSLGQLKELKTLGIGGNNLSGSIPPSIYNLSFLVIFSVSENQMHGS 232
+ F + +++ L + +L+ + + L + +S N++
Sbjct: 421 YLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLR-- 476
Query: 233 LPPSLGLYFPNLKLFQTNENFFSGSIPISLSNASKLEYVEIASNSFFGKLSVNFGGMKNL 292
++P +L+ LE ++ + N+ + + L
Sbjct: 477 ------------------------ALPPALAALRCLEVLQASDNALE-NVD-GVANLPRL 510
Query: 293 SYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGA--LPHSIANLSSQLQIL 350
L+L N L + + L +C +L +L+L GN + +A + + +
Sbjct: 511 QELLLCNNRLQQSAAIQ-----PLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 565
Query: 351 V 351
+
Sbjct: 566 L 566
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 57.1 bits (137), Expect = 1e-08
Identities = 43/319 (13%), Positives = 96/319 (30%), Gaps = 26/319 (8%)
Query: 97 RRLETLLLSDNSLVGKIPANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPMNN 156
+ + L L+ SR+ L+L ++ S+ + +
Sbjct: 245 LCCVHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPDGRNRPSHVWLCDL 304
Query: 157 LTGGIPPFLGNLTSLEVVSLAGNPFGGNI--------PDSLGQLKELKTLGIGGNNLSGS 208
+ L T + + + + + ++L + +
Sbjct: 305 PAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQLFRCELSVEKST-V 363
Query: 209 IPPSIYNLSFLVIFSVSENQMHGSLPPSLGLYFPNLKLFQTNENFFSGSIPISLSNASKL 268
+ + + L ++ + L + + + +
Sbjct: 364 LQSELESCKELQELEPENKWCLLTIILLM----RALDPLLYEKETLQYFSTLKAVDPMRA 419
Query: 269 EYVEIASNSFFGKLSVNFGGMKNLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLG 328
Y++ + F + SV ++ L L + +L + L + L L
Sbjct: 420 AYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTV--------LCHLEQLLLVTHLDLS 471
Query: 329 GNQFRGALPHSIANLSSQLQILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTG-SIPK 387
N+ R ALP ++A L L++L N L ++ G+ NL L L N+ + +
Sbjct: 472 HNRLR-ALPPALAALRC-LEVLQASDNALE-NVD-GVANLPRLQELLLCNNRLQQSAAIQ 527
Query: 388 EMGKLLNLQGLDFGGNHFS 406
+ L L+ GN
Sbjct: 528 PLVSCPRLVLLNLQGNSLC 546
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 52.8 bits (126), Expect = 2e-07
Identities = 44/286 (15%), Positives = 76/286 (26%), Gaps = 41/286 (14%)
Query: 289 MKNLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLSSQLQ 348
M L ++ E + + S L SL + SQ +
Sbjct: 271 MGTLLLMVDEAPLSVEWRTPDGRNRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKE 330
Query: 349 ILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGE 408
++L L+ + + T + E+ LQ L+
Sbjct: 331 CVLL--KDRPECWCRDSATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLT 387
Query: 409 IPSTLGNLSSLY---EIFLGDNNLSGVIPSSLGNLERLAILEMFANELSGTIPGDIFNIS 465
I + L L E + L V P L+ L + N + D+
Sbjct: 388 IILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVR--- 444
Query: 466 SLSVSLDLAENHFVGSIPPRIGNLKALRCFDVSNNDLSGEIPSELGLCSSLEEIYLAENF 525
L LA ++ + L + D+S+N L +P L LE + +
Sbjct: 445 ----VLHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQAS--- 494
Query: 526 FNGFIPSFFRTSRGIRKVDLSRNNFFGQIPIFLEALSLEYLNLSFN 571
+N + L+ L L N
Sbjct: 495 ----------------------DNALENVDGVANLPRLQELLLCNN 518
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 | Back alignment and structure |
|---|
Score = 60.0 bits (146), Expect = 3e-10
Identities = 41/220 (18%), Positives = 80/220 (36%), Gaps = 20/220 (9%)
Query: 69 IGNLSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLTVLVL 128
LS ++ N N+ IQ ++F L+ L LS N + + L ++L L +
Sbjct: 37 QKELSGVQNFNGDNSNIQSLAGMQF--FTNLKELHLSHNQIS-DLS-PLKDLTKLEELSV 92
Query: 129 GNNKLVGSIPFEFVSLYKLKQLALPMNNLTGGIPPFLGNLTSLEVVSLAGNPFGGNIPD- 187
N+L + L +L L N L L +L +LE++S+ N +
Sbjct: 93 NRNRLKN---LNGIPSACLSRLFLDNNELRD--TDSLIHLKNLEILSIRNN----KLKSI 143
Query: 188 -SLGQLKELKTLGIGGNNLSGSIPPSIYNLSFLVIFSVSENQMHGSLPPSLGLYFPNLKL 246
LG L +L+ L + GN ++ + + L + ++ + + +
Sbjct: 144 VMLGFLSKLEVLDLHGNEIT-NTGG-LTRLKKVNWIDLTGQKCVNEPVKYQPELYITNTV 201
Query: 247 FQTNENFFSGSIPISLSNASKLEYVEIASNSFFGKLSVNF 286
+ + S P +SN + V++
Sbjct: 202 KDPDGRWIS---PYYISNGGSYVDGCVLWELPVYTDEVSY 238
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 | Back alignment and structure |
|---|
Score = 56.6 bits (137), Expect = 6e-09
Identities = 39/194 (20%), Positives = 68/194 (35%), Gaps = 22/194 (11%)
Query: 261 SLSNASKLEYVEIASNSFFGKLSVNFGGMKNLSYLILEYNNLGSGESDEMGFMNSLANCS 320
S S ++ +++ L+ NL L L +N + ++ L + +
Sbjct: 36 SQKELSGVQNFNGDNSNI-QSLA-GMQFFTNLKELHLSHNQISD--------LSPLKDLT 85
Query: 321 KLQVLSLGGNQFRGALPHSIANLSS-QLQILVLGTNQLYGSIPSGIGNLVNLYSLQTEEN 379
KL+ LS+ N+ + ++ + S L L L N+L + +L NL L N
Sbjct: 86 KLEELSVNRNRLK-----NLNGIPSACLSRLFLDNNEL--RDTDSLIHLKNLEILSIRNN 138
Query: 380 QFTGSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLGDNNLSGVIPSSLGN 439
+ SI +G L L+ LD GN + L L + I L
Sbjct: 139 KLK-SIV-MLGFLSKLEVLDLHGNEIT-NT-GGLTRLKKVNWIDLTGQKCVNEPVKYQPE 194
Query: 440 LERLAILEMFANEL 453
L ++
Sbjct: 195 LYITNTVKDPDGRW 208
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 | Back alignment and structure |
|---|
Score = 53.9 bits (130), Expect = 4e-08
Identities = 34/195 (17%), Positives = 68/195 (34%), Gaps = 26/195 (13%)
Query: 262 LSNASKLEYVEIASNSFFGKLSVNFGGMKNLSYLILEYNNLGSGESDEMGFMNSLANCSK 321
+ + S V+ + + + +N+ S + + +
Sbjct: 15 DPGLANAVKQNLGKQSV--TDLVSQKELSGVQNFNGDNSNIQS--------LAGMQFFTN 64
Query: 322 LQVLSLGGNQFRGALPHSIANLSS--QLQILVLGTNQLYGSIPSGIGNLVNLYSLQTEEN 379
L+ L L NQ ++ L +L+ L + N+L +GI + L L + N
Sbjct: 65 LKELHLSHNQIS-----DLSPLKDLTKLEELSVNRNRL--KNLNGIPSA-CLSRLFLDNN 116
Query: 380 QFTGSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLGDNNLSGVIPSSLGN 439
+ + L NL+ L N I LG LS L + L N ++ L
Sbjct: 117 ELRD--TDSLIHLKNLEILSIRNNKLK-SIVM-LGFLSKLEVLDLHGNEITNT--GGLTR 170
Query: 440 LERLAILEMFANELS 454
L+++ +++ +
Sbjct: 171 LKKVNWIDLTGQKCV 185
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 | Back alignment and structure |
|---|
Score = 51.2 bits (123), Expect = 3e-07
Identities = 37/182 (20%), Positives = 64/182 (35%), Gaps = 20/182 (10%)
Query: 345 SQLQILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNH 404
+ LG + + L + + + + S+ M NL+ L N
Sbjct: 19 ANAVKQNLGKQSV--TDLVSQKELSGVQNFNGDNSNIQ-SL-AGMQFFTNLKELHLSHNQ 74
Query: 405 FSGEIPSTLGNLSSLYEIFLGDNNLSGVIPSSLGNLERLAILEMFANELSGTIPGDIFNI 464
S ++ S L +L+ L E+ + N L + L RL + NEL D ++
Sbjct: 75 IS-DL-SPLKDLTKLEELSVNRNRLKNLNGIPSACLSRLFLDN---NELR-----DTDSL 124
Query: 465 SSLS--VSLDLAENHFVGSIPPRIGNLKALRCFDVSNNDLSGEIPSELGLCSSLEEIYLA 522
L L + N + SI +G L L D+ N+++ L + I L
Sbjct: 125 IHLKNLEILSIRNNK-LKSIVM-LGFLSKLEVLDLHGNEIT-NT-GGLTRLKKVNWIDLT 180
Query: 523 EN 524
Sbjct: 181 GQ 182
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 | Back alignment and structure |
|---|
Score = 46.9 bits (112), Expect = 8e-06
Identities = 35/198 (17%), Positives = 69/198 (34%), Gaps = 20/198 (10%)
Query: 80 LMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLTVLVLGNNKLVGSIPF 139
I P L L S+ + S + N+ +
Sbjct: 4 QRPTPINQVFPDP--GLANAVKQNLGKQSV--TDLVSQKELSGVQNFNGDNSNIQSLAGM 59
Query: 140 EFVSLYKLKQLALPMNNLTGGIPPFLGNLTSLEVVSLAGNPFGGNIPD-SLGQLKELKTL 198
+ LK+L L N ++ + P L +LT LE +S+ N + + + L L
Sbjct: 60 Q--FFTNLKELHLSHNQIS-DLSP-LKDLTKLEELSVNRN----RLKNLNGIPSACLSRL 111
Query: 199 GIGGNNLSGSIPPSIYNLSFLVIFSVSENQMHGSLPPSLGLYFPNLKLFQTNENFFSGSI 258
+ N L + +L L I S+ N++ S+ L L++ + N + +
Sbjct: 112 FLDNNELR-DTDS-LIHLKNLEILSIRNNKLK-SIVMLGFL--SKLEVLDLHGNEIT-NT 165
Query: 259 PISLSNASKLEYVEIASN 276
L+ K+ ++++
Sbjct: 166 G-GLTRLKKVNWIDLTGQ 182
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229 | Back alignment and structure |
|---|
Score = 58.9 bits (143), Expect = 5e-10
Identities = 35/102 (34%), Positives = 48/102 (47%), Gaps = 9/102 (8%)
Query: 286 FGGMKNLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLSS 345
F + NL L L N LG+ G +SL L VL LG NQ LP ++ +
Sbjct: 60 FDSLINLKELYLGSNQLGALPV---GVFDSLTQ---LTVLDLGTNQLT-VLPSAVFDRLV 112
Query: 346 QLQILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSIPK 387
L+ L + N+L +P GI L +L L ++NQ SIP
Sbjct: 113 HLKELFMCCNKL-TELPRGIERLTHLTHLALDQNQLK-SIPH 152
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229 | Back alignment and structure |
|---|
Score = 54.3 bits (131), Expect = 2e-08
Identities = 38/131 (29%), Positives = 61/131 (46%), Gaps = 6/131 (4%)
Query: 323 QVLSLGGNQFRGALPHSIANLSSQLQILVLGTNQLYGSIPSGI-GNLVNLYSLQTEENQF 381
Q+L L NQ L + + L+ L LG+NQL G++P G+ +L L L NQ
Sbjct: 43 QILYLHDNQIT-KLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQL 100
Query: 382 TGSIPKEM-GKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLGDNNLSGVIPSSLGNL 440
T +P + +L++L+ L N + E+P + L+ L + L N L + + L
Sbjct: 101 T-VLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRL 158
Query: 441 ERLAILEMFAN 451
L +F N
Sbjct: 159 SSLTHAYLFGN 169
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229 | Back alignment and structure |
|---|
Score = 52.4 bits (126), Expect = 8e-08
Identities = 36/130 (27%), Positives = 49/130 (37%), Gaps = 9/130 (6%)
Query: 55 DLRSKALSGLLSPQIGNLSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIP 114
L ++ L +L L+E+ L +N + F L +L L L N L +P
Sbjct: 46 YLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLT-VLP 104
Query: 115 A----NLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTGGIPPFLGNLTS 170
+ L L L + NKL +P L L LAL N L L+S
Sbjct: 105 SAVFDRLV---HLKELFMCCNKL-TELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSS 160
Query: 171 LEVVSLAGNP 180
L L GNP
Sbjct: 161 LTHAYLFGNP 170
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229 | Back alignment and structure |
|---|
Score = 46.2 bits (110), Expect = 9e-06
Identities = 42/145 (28%), Positives = 58/145 (40%), Gaps = 27/145 (18%)
Query: 113 IPANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLT---GGIPPFLGNLT 169
IP N +L L +N++ P F SL LK+L L N L G+ L LT
Sbjct: 38 IPTNA------QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLT 91
Query: 170 SLEVVSLAGN-----PFGGNIPDSLGQLKELKTLGIGGNNLSGSIPPSIYNLSFLVIFSV 224
L L N P + D L LKE L + N L+ +P I L+ L ++
Sbjct: 92 VL---DLGTNQLTVLPSA--VFDRLVHLKE---LFMCCNKLT-ELPRGIERLTHLTHLAL 142
Query: 225 SENQMHGSLPPSLGLYFPNLKLFQT 249
+NQ+ S+P F L
Sbjct: 143 DQNQLK-SIPHGA---FDRLSSLTH 163
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229 | Back alignment and structure |
|---|
Score = 40.4 bits (95), Expect = 8e-04
Identities = 36/116 (31%), Positives = 50/116 (43%), Gaps = 12/116 (10%)
Query: 100 ETLLLSDNSLVGKIPANLSYCSRLTVLVLGNNKLVGSIPFE-FVSLYKLKQLALPMNNLT 158
+ L L DN + P L L LG+N+L ++P F SL +L L L N LT
Sbjct: 43 QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLGTNQLT 101
Query: 159 GGIPP--F--LGNLTSLEVVSLAGNPFGGNIPDSLGQLKELKTLGIGGNNLSGSIP 210
+P F L +L L + N +P + +L L L + N L SIP
Sbjct: 102 -VLPSAVFDRLVHLKEL---FMCCNKL-TELPRGIERLTHLTHLALDQNQLK-SIP 151
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176 | Back alignment and structure |
|---|
Score = 56.6 bits (137), Expect = 1e-09
Identities = 31/118 (26%), Positives = 50/118 (42%), Gaps = 6/118 (5%)
Query: 66 SPQIGNLSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLTV 125
+ Q N RE++L I I L + + + SDN + K+ RL
Sbjct: 12 AAQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-KL-DGFPLLRRLKT 68
Query: 126 LVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLT--GGIPPFLGNLTSLEVVSLAGNPF 181
L++ NN++ +L L +L L N+L G + P L +L SL + + NP
Sbjct: 69 LLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDP-LASLKSLTYLCILRNPV 125
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208 | Back alignment and structure |
|---|
Score = 56.2 bits (136), Expect = 3e-09
Identities = 45/136 (33%), Positives = 62/136 (45%), Gaps = 11/136 (8%)
Query: 294 YLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLSSQLQILVLG 353
YL LE N+L S + + L L LGGN+ + +LP+ + N + L L L
Sbjct: 32 YLDLETNSLKSLPN------GVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLS 84
Query: 354 TNQLYGSIPSGI-GNLVNLYSLQTEENQFTGSIPKEM-GKLLNLQGLDFGGNHFSGEIPS 411
TNQL S+P+G+ L L L NQ S+P + KL L+ L N
Sbjct: 85 TNQL-QSLPNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKLTQLKDLRLYQNQLKSVPDG 142
Query: 412 TLGNLSSLYEIFLGDN 427
L+SL I+L DN
Sbjct: 143 VFDRLTSLQYIWLHDN 158
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 5e-06
Identities = 43/134 (32%), Positives = 61/134 (45%), Gaps = 14/134 (10%)
Query: 55 DLRSKALSGLLSPQIGNLSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIP 114
DL + +L L + L+ L ++ L N +Q F +L L L LS N L +P
Sbjct: 34 DLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQ-SLP 92
Query: 115 A----NLSYCSRLTVLVLGNNKLVGSIPFE-FVSLYKLKQLALPMNNLTGGIPP--FLGN 167
L+ +L L L N+L S+P F L +LK L L N L +P F
Sbjct: 93 NGVFDKLT---QLKELALNTNQL-QSLPDGVFDKLTQLKDLRLYQNQLKS-VPDGVF-DR 146
Query: 168 LTSLEVVSLAGNPF 181
LTSL+ + L NP+
Sbjct: 147 LTSLQYIWLHDNPW 160
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149 | Back alignment and structure |
|---|
Score = 54.7 bits (132), Expect = 5e-09
Identities = 26/112 (23%), Positives = 43/112 (38%), Gaps = 4/112 (3%)
Query: 71 NLSFLREINLMNNTIQ-GEIPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLTVLVLG 129
S ++E+ L N+ G++ LE L + L I ANL ++L L L
Sbjct: 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SI-ANLPKLNKLKKLELS 72
Query: 130 NNKLVGSIPFEFVSLYKLKQLALPMNNLTG-GIPPFLGNLTSLEVVSLAGNP 180
+N++ G + L L L N + L L +L+ + L
Sbjct: 73 DNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCE 124
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168 | Back alignment and structure |
|---|
Score = 53.6 bits (129), Expect = 1e-08
Identities = 29/113 (25%), Positives = 44/113 (38%), Gaps = 6/113 (5%)
Query: 71 NLSFLREINLMNNTIQ-GEIPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLTVLVLG 129
+ +RE+ L N G+I LE L L + L+ + +NL +L L L
Sbjct: 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SV-SNLPKLPKLKKLELS 79
Query: 130 NNKLVGSIPFEFVSLYKLKQLALPMNNLT--GGIPPFLGNLTSLEVVSLAGNP 180
N++ G + L L L L N L + P L L L+ + L
Sbjct: 80 ENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEP-LKKLECLKSLDLFNCE 131
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168 | Back alignment and structure |
|---|
Score = 47.4 bits (113), Expect = 2e-06
Identities = 32/119 (26%), Positives = 50/119 (42%), Gaps = 12/119 (10%)
Query: 91 LEFGRLRRLETLLLSDNSL-VGKIPANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQ 149
L + L+L + GKI + L L L N L+ S+ L KLK+
Sbjct: 18 LRNRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SVSN-LPKLPKLKK 75
Query: 150 LALPMNNLTGGIPPFLGNLTSLEVVSLAGNPFGGNIPD-----SLGQLKELKTLGIGGN 203
L L N + GG+ L +L ++L+GN + D L +L+ LK+L +
Sbjct: 76 LELSENRIFGGLDMLAEKLPNLTHLNLSGN----KLKDISTLEPLKKLECLKSLDLFNC 130
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192 | Back alignment and structure |
|---|
Score = 51.9 bits (125), Expect = 7e-08
Identities = 27/107 (25%), Positives = 40/107 (37%), Gaps = 4/107 (3%)
Query: 323 QVLSLGGNQFRGALPHSIANLSSQLQILVLGTNQLYGSIPSGI-GNLVNLYSLQTEENQF 381
L L N+ + L L L NQL I ++ LQ EN+
Sbjct: 32 TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQL-TGIEPNAFEGASHIQELQLGENKI 90
Query: 382 TGSIPKEM-GKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLGDN 427
I +M L L+ L+ N S +P + +L+SL + L N
Sbjct: 91 K-EISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192 | Back alignment and structure |
|---|
Score = 50.0 bits (120), Expect = 4e-07
Identities = 38/111 (34%), Positives = 53/111 (47%), Gaps = 9/111 (8%)
Query: 76 REINLMNNTIQGEIPL-EFGRLRRLETLLLSDNSLVGKIPANL-SYCSRLTVLVLGNNKL 133
E+ L +N + FGRL L L L N L I N S + L LG NK+
Sbjct: 32 TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT-GIEPNAFEGASHIQELQLGENKI 90
Query: 134 VGSIPFE-FVSLYKLKQLALPMNNLTGGIPP--FLGNLTSLEVVSLAGNPF 181
I + F+ L++LK L L N ++ + P F +L SL ++LA NPF
Sbjct: 91 -KEISNKMFLGLHQLKTLNLYDNQISC-VMPGSF-EHLNSLTSLNLASNPF 138
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192 | Back alignment and structure |
|---|
Score = 46.9 bits (112), Expect = 3e-06
Identities = 24/91 (26%), Positives = 38/91 (41%), Gaps = 10/91 (10%)
Query: 286 FGGMKNLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLSS 345
FG + +L L L+ N L E S +Q L LG N+ + + + +
Sbjct: 50 FGRLPHLVKLELKRNQLTGIEP---NAFEGA---SHIQELQLGENKIK-EISNKMFLGLH 102
Query: 346 QLQILVLGTNQLYGSIPSGIGNLVNLYSLQT 376
QL+ L L NQ+ + G +L SL +
Sbjct: 103 QLKTLNLYDNQI-SCVMPGSFE--HLNSLTS 130
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
Score = 54.2 bits (131), Expect = 8e-08
Identities = 72/413 (17%), Positives = 140/413 (33%), Gaps = 63/413 (15%)
Query: 75 LREINLMNNTIQGEIPLEFGR-LRRLETLLLSDNSL----VGKIPANLSYCSRLTVLVLG 129
++ +++ + E L++ + + L D L I + L L L L
Sbjct: 5 IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 64
Query: 130 NNKL----VGSIPFEF-VSLYKLKQLALPMNNLT----GGIPPFLGNLTSLEVVSLAGNP 180
+N+L V + K+++L+L LT G + L L +L+ + L+ N
Sbjct: 65 SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL 124
Query: 181 FGGNIPDSLGQLKE-----LKTLGIGGNNLS----GSIPPSIYNLSFLVIFSVSENQMHG 231
G L + L+ L + +LS + + +VS N ++
Sbjct: 125 LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINE 184
Query: 232 S----LPPSLGLYFPNLKLFQTNENFFS----GSIPISLSNASKLEYVEIASNSFF---- 279
+ L L L+ + + + +++ + L + + SN
Sbjct: 185 AGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGM 244
Query: 280 -----GKLSVNFGGMKNLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRG 334
G L + L L + + + ++ + L L+ LSL GN+
Sbjct: 245 AELCPGLLHPS----SRLRTLWIWECGITAKGCGDLCRV--LRAKESLKELSLAGNELGD 298
Query: 335 ----ALPHSIANLSSQLQILVLGTNQL----YGSIPSGIGNLVNLYSLQTEENQFTGSIP 386
L ++ QL+ L + + S + L LQ N+ +
Sbjct: 299 EGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGV 358
Query: 387 KEMGKLL-----NLQGLDFGGNHFSGE----IPSTLGNLSSLYEIFLGDNNLS 430
+E+ + L L+ L S + +TL SL E+ L +N L
Sbjct: 359 RELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG 411
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
Score = 48.8 bits (117), Expect = 3e-06
Identities = 57/320 (17%), Positives = 101/320 (31%), Gaps = 60/320 (18%)
Query: 291 NLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRG----ALPHSIANLSSQ 346
L L LEY +L + + + + L + L++ N L + + Q
Sbjct: 143 RLEKLQLEYCSLSAASCEPLASV--LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQ 200
Query: 347 LQILVLGTNQL----YGSIPSGIGNLVNLYSLQTEENQFTGSIPKEMGKLL-----NLQG 397
L+ L L + + + + + +L L N+ E+ L L+
Sbjct: 201 LEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRT 260
Query: 398 LDFGGNHFSGE----IPSTLGNLSSLYEIFLGDNNLSGVIPSSLGNLERLAILEMFANEL 453
L + + + L SL E+ L N LG+ + E
Sbjct: 261 LWIWECGITAKGCGDLCRVLRAKESLKELSLAGNE--------LGDEGARLLCETLLE-- 310
Query: 454 SGTIPGDIFNISSLSVSLDLAENHF----VGSIPPRIGNLKALRCFDVSNNDLSGEIPSE 509
L SL + F + + L +SNN L E
Sbjct: 311 ---------PGCQLE-SLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRE 360
Query: 510 LG-----LCSSLEEIYLAENFFN----GFIPSFFRTSRGIRKVDLSRNNF--FGQIPIFL 558
L S L ++LA+ + + + + +R++DLS N G I +
Sbjct: 361 LCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAG-ILQLV 419
Query: 559 EAL-----SLEYLNLSFNDF 573
E++ LE L L +
Sbjct: 420 ESVRQPGCLLEQLVLYDIYW 439
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
Score = 43.0 bits (102), Expect = 2e-04
Identities = 56/330 (16%), Positives = 95/330 (28%), Gaps = 50/330 (15%)
Query: 291 NLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRG----ALPHSIANLSSQ 346
+ L L+ L + L LQ L L N L + + +
Sbjct: 86 KIQKLSLQNCCLTGAGCGVLSST--LRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCR 143
Query: 347 LQILVLGTNQL----YGSIPSGIGNLVNLYSLQTEENQFTGSIPKEMGKLL-----NLQG 397
L+ L L L + S + + L N + + + + L L+
Sbjct: 144 LEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEA 203
Query: 398 LDFGGNHFSGE----IPSTLGNLSSLYEIFLGDNNL--SGVI---PSSLGNLERLAILEM 448
L + + + + + +SL E+ LG N L G+ P L RL L +
Sbjct: 204 LKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWI 263
Query: 449 FANELSGTIPGDIFNISSLSVS-----LDLAENHFVGSIPPRIGNL-----KALRCFDVS 498
+ ++ G L L LA N + L V
Sbjct: 264 WECGITAK--GCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVK 321
Query: 499 NNDLSGE----IPSELGLCSSLEEIYLAENFF-----NGFIPSFFRTSRGIRKVDLSRNN 549
+ + S L L E+ ++ N + +R + L+ +
Sbjct: 322 SCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCD 381
Query: 550 FFGQIPIFL-EAL----SLEYLNLSFNDFE 574
L L SL L+LS N
Sbjct: 382 VSDSSCSSLAATLLANHSLRELDLSNNCLG 411
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 52.9 bits (126), Expect = 3e-07
Identities = 79/489 (16%), Positives = 151/489 (30%), Gaps = 135/489 (27%)
Query: 184 NIPDSLGQL---KELKTLGIGGNNLSGSIPPSIYNLSFLVIFSVSENQMHGSLPPSLGLY 240
++ D + +E+ + + + +SG+ L F + S E + + L
Sbjct: 37 DVQDMPKSILSKEEIDHIIMSKDAVSGT-----LRL-FWTLLSKQEEMVQKFVEEVL--- 87
Query: 241 FPNLKLFQTNENFFSGSI------PISLSNASKLEYVEIASNS--FFGKLSVNFG----- 287
+ N F I P S+ +E + N F K +V+
Sbjct: 88 -------RINYKFLMSPIKTEQRQP-SMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLK 139
Query: 288 ---GMKNLS---YLILEYNNLGSGESDEMGFMNSLAN--CSKLQV----------LSLGG 329
+ L +++ LGSG++ +A C +V L+L
Sbjct: 140 LRQALLELRPAKNVLI-DGVLGSGKT-------WVALDVCLSYKVQCKMDFKIFWLNLK- 190
Query: 330 NQFRGALPHSIANLSSQLQILVLGTNQLYGSIPSGIGNL-VNLYSLQTEENQFTGSIPKE 388
N P ++ LQ L+ + + S N+ + ++S+Q E + S P E
Sbjct: 191 NCNS---PETVLE---MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYE 244
Query: 389 MGKLLNL---------QGLDFG-------GNHFSGEIPSTLGNLSSLYEIFLGDNNLSGV 432
LL L + ++ L ++ I L ++
Sbjct: 245 NC-LLVLLNVQNAKAWNAFNLSCKILLTTRFK---QVTDFLSAATT-THISLDHHS---- 295
Query: 433 IPSSLGNLERLAILEMFANELSGTIPGDIFNISSLSVSLDLAENHFVGSIPPRIGNLKAL 492
+L E ++L + + +P ++ + +S+ +AE + N K
Sbjct: 296 --MTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSI-IAE--SIRDGLATWDNWK-- 348
Query: 493 RCFDVSNNDLSGEIPSELGLCSSLEEIYLAENFFNGFIPSFFRTSRGIRKVDLSRNNFFG 552
V+ + L+ I S L + LE + F + F S
Sbjct: 349 ---HVNCDKLTTIIESSL---NVLEPAEYRKMFDRLSV---FPPS-----AH-------- 386
Query: 553 QIPIFLEALSLEYLNLSFNDFEGRLPTRGIFANASAISVGGCNRLCGGIHELQL---PKC 609
IP LSL + ++ +D + S + I + L K
Sbjct: 387 -IPT--ILLSLIWFDVIKSDVMVVVNK---LHKYSLVEKQPKESTI-SIPSIYLELKVKL 439
Query: 610 PE----HES 614
H S
Sbjct: 440 ENEYALHRS 448
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 50.2 bits (119), Expect = 2e-06
Identities = 84/550 (15%), Positives = 140/550 (25%), Gaps = 199/550 (36%)
Query: 1 MFLFFITLLQ-----VAAFEEGDLAA-----LQAFKSMISHDPQGILNS--------WND 42
F TLL V F E L + K+ P + +ND
Sbjct: 64 TLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTE-QRQPSMMTRMYIEQRDRLYND 122
Query: 43 SRHFCEW-----EGITCDLRSKALSGLLSPQIGNL---------SFLREINLMNNTIQGE 88
++ F ++ + LR L L P L +++ ++ +Q +
Sbjct: 123 NQVFAKYNVSRLQPYL-KLRQALLE--LRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCK 179
Query: 89 IP-----LEFGRLRRLETLLLSDNSLVGKIPANLS------------------------- 118
+ L ET+L L+ +I N +
Sbjct: 180 MDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLK 239
Query: 119 ---YCSRL-------------------TVLVLGNNKLVGSIPFEFVSLYKLKQLALPMNN 156
Y + L +L+ K V +F+S + +++
Sbjct: 240 SKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQV----TDFLSAATTTH--ISLDH 293
Query: 157 LTGGIPP-----FLGNLTSLEVVSL-----AGNP-----FGGNIPDSLGQLKELKTLGIG 201
+ + P L L NP +I D L K +
Sbjct: 294 HSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNC- 352
Query: 202 GNNLSGSIPPSIYNLSFLVIFSVSENQMHGSLPPSLGLYFPNLKLFQTNENFFSGSIPIS 261
+ L+ I S+ L P F L +F + + IP
Sbjct: 353 -DKLTTIIESSLNVLE----------------PAEYRKMFDRLSVFPPSAH-----IPTI 390
Query: 262 -LS---NASKLEYVEIASNSFFGKLSVNFGGMKNLSYLILEYNNLGSGESDEMGFMNSLA 317
LS V + N V K + ++ ++
Sbjct: 391 LLSLIWFDVIKSDVMVVVNKLHKYSLVE----KQPKESTISIPSI---------YLELKV 437
Query: 318 NCSKLQVLSLGGNQFRGALPHSIANLSSQLQILV------LGTNQLYGSIPSGIGNLVNL 371
L H ++ I L L S IG
Sbjct: 438 KLENEYAL------------H--RSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIG----- 478
Query: 372 YSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHF--------------SGEIPSTLGNLS 417
+ L+ E+ E L + LDF F SG I +TL L
Sbjct: 479 HHLKNIEHP-------ERMTLFRMVFLDF---RFLEQKIRHDSTAWNASGSILNTLQQL- 527
Query: 418 SLYEIFLGDN 427
Y+ ++ DN
Sbjct: 528 KFYKPYICDN 537
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 49.9 bits (118), Expect = 2e-06
Identities = 86/599 (14%), Positives = 173/599 (28%), Gaps = 205/599 (34%)
Query: 74 FLREINLMNNTIQGEI---PLEFGRLRRL-ETLLLSDNSLVGKIPANLSYCSRLTVLVLG 129
+ I L I I RL TLL +V + VL
Sbjct: 41 MPKSI-LSKEEID-HIIMSKDAVSGTLRLFWTLLSKQEEMV----------QKFVEEVLR 88
Query: 130 NNK--LVGSIPFEFVSLYKLKQLALPM-------NNLTGGIPPFL-GNLTSLEVVSLAGN 179
N L+ I E +Q ++ + L F N++ L+
Sbjct: 89 INYKFLMSPIKTEQ------RQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYL---- 138
Query: 180 PFGGNIPDSLGQLKELKTL---GIGGNNLSGSIPPSIYNLSFLVIFSVSENQMHGSLPP- 235
+ +L +L+ K + G+ G SG +++ + ++ +
Sbjct: 139 ----KLRQALLELRPAKNVLIDGVLG---SGK--------TWVALDVCLSYKVQCKMDFK 183
Query: 236 ----SLGLYFPNLKLFQTNENFFSGSIPISLSNASKLEYVEIASNSFFGKLSVNFGGMK- 290
+L + + + P S + +++ +S +L
Sbjct: 184 IFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY 243
Query: 291 NLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLSSQLQIL 350
L+L + + + N F NLS + IL
Sbjct: 244 ENCLLVL----------LNV--------QNA-KAW----NAF---------NLSCK--IL 269
Query: 351 VLG-----TNQLYGSI---PSGIGNLVNLYSLQTEE------NQFTGSIPKEMGK----L 392
+ T+ L + S + + L + + + +P+E+
Sbjct: 270 LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRR 329
Query: 393 LNLQGLDFGGNHFSGEIPSTLGNLSSLYEIF--LGDNNLSGVIPSSLGNLE--------- 441
L++ I ++ + + ++ + + + L+ +I SSL LE
Sbjct: 330 LSI-------------IAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFD 376
Query: 442 RLAI-----------LEMFANELSGTIPGDI---FNISSLSVSLDLAENHFVGSIP---- 483
RL++ L + ++ + + + SL V E+ SIP
Sbjct: 377 RLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSL-VEKQPKESTI--SIPSIYL 433
Query: 484 ---PRIGNLKAL-----------RCFDVSNNDLSGEIPSELGLCSSLEEIYLAENFFNGF 529
++ N AL + FD ++DL P Y F++
Sbjct: 434 ELKVKLENEYALHRSIVDHYNIPKTFD--SDDLI--PPYLDQ--------Y----FYS-H 476
Query: 530 IPSFFRTSRGIRKVDLSRNNFFGQIPIFLEALSLEYLNLSFNDFEGRLPTRGIFANASA 588
I + ++ L F + +L+ F E ++ NAS
Sbjct: 477 IGHHLKNIEHPERMTL-----FRMV----------FLDFRF--LEQKIRHDSTAWNASG 518
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193 | Back alignment and structure |
|---|
Score = 50.0 bits (120), Expect = 4e-07
Identities = 28/109 (25%), Positives = 51/109 (46%), Gaps = 7/109 (6%)
Query: 76 REINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPANL-SYCSRLTVLVLGNNKLV 134
E+ L N +P E + L + LS+N + + S ++L L+L N+L
Sbjct: 34 TELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQLLTLILSYNRL- 90
Query: 135 GSIPFE-FVSLYKLKQLALPMNNLTGGIPPFL-GNLTSLEVVSLAGNPF 181
IP F L L+ L+L N+++ +P +L++L +++ NP
Sbjct: 91 RCIPPRTFDGLKSLRLLSLHGNDISV-VPEGAFNDLSALSHLAIGANPL 138
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193 | Back alignment and structure |
|---|
Score = 43.4 bits (103), Expect = 6e-05
Identities = 33/104 (31%), Positives = 46/104 (44%), Gaps = 11/104 (10%)
Query: 257 SIPISLSNASKLEYVEIASNSFFGKLSVN-FGGMKNLSYLILEYNNLGSGESDEMGFMNS 315
+P LSN L +++++N LS F M L LIL YN L +
Sbjct: 45 LVPKELSNYKHLTLIDLSNNRI-STLSNQSFSNMTQLLTLILSYNRL---RCIPPRTFDG 100
Query: 316 LANCSKLQVLSLGGNQFRGALPHSI-ANLSSQLQILVLGTNQLY 358
L L++LSL GN +P +LS+ L L +G N LY
Sbjct: 101 L---KSLRLLSLHGNDIS-VVPEGAFNDLSA-LSHLAIGANPLY 139
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193 | Back alignment and structure |
|---|
Score = 40.7 bits (96), Expect = 4e-04
Identities = 25/104 (24%), Positives = 42/104 (40%), Gaps = 20/104 (19%)
Query: 113 IPANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTGGIPPFL-GNLTSL 171
IP ++ T L L N+ +P E + L + L N ++ + N+T L
Sbjct: 29 IPRDV------TELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQL 80
Query: 172 EVVSLAGN-----PFGGNIPDSLGQLKELKTLGIGGNNLSGSIP 210
+ L+ N P D L L+ L + GN++S +P
Sbjct: 81 LTLILSYNRLRCIPPR--TFDGLKS---LRLLSLHGNDIS-VVP 118
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 50.9 bits (121), Expect = 5e-07
Identities = 19/97 (19%), Positives = 30/97 (30%), Gaps = 3/97 (3%)
Query: 384 SIPKEMGKLLNLQGLDFGGNHFSGEIPS-TLGNLSSLYEIFLGDNNLSGVIPSSLGNLER 442
+ NL L + L L L + + + L V P + R
Sbjct: 22 DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPR 81
Query: 443 LAILEMFANELSGTIPGDIFNISSLSVSLDLAENHFV 479
L+ L + N L ++ SL L L+ N
Sbjct: 82 LSRLNLSFNALE-SLSWKTVQGLSLQE-LVLSGNPLH 116
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 47.8 bits (113), Expect = 6e-06
Identities = 21/94 (22%), Positives = 36/94 (38%), Gaps = 4/94 (4%)
Query: 67 PQIGNLSFLREINLMNNTIQGEIPLE-FGRLRRLETLLLSDNSLVGKIPAN-LSYCSRLT 124
+ L E+ + N + L L L L + + L + + + RL+
Sbjct: 25 HHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTPRLS 83
Query: 125 VLVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLT 158
L L N L S+ ++ V L++L L N L
Sbjct: 84 RLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLH 116
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 44.0 bits (103), Expect = 1e-04
Identities = 17/112 (15%), Positives = 31/112 (27%), Gaps = 2/112 (1%)
Query: 120 CSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTGGIPPF-LGNLTSLEVVSLAG 178
C + + L +L + + L L L +++
Sbjct: 6 CPHGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVK 65
Query: 179 NPFGGNIPDSLGQLKELKTLGIGGNNLSGSIPPSIYNLSFLVIFSVSENQMH 230
+ PD+ L L + N L S+ L +S N +H
Sbjct: 66 SGLRFVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLH 116
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 40.9 bits (95), Expect = 9e-04
Identities = 13/96 (13%), Positives = 30/96 (31%), Gaps = 3/96 (3%)
Query: 184 NIPDSLGQLKELKTLGIGGNNLSGSIPP-SIYNLSFLVIFSVSENQMHGSLPPSLGLYFP 242
+ L + L L I + + L L ++ ++ + + P + P
Sbjct: 22 DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTP 80
Query: 243 NLKLFQTNENFFSGSIPISLSNASKLEYVEIASNSF 278
L + N S+ L+ + ++ N
Sbjct: 81 RLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPL 115
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177 | Back alignment and structure |
|---|
Score = 49.2 bits (118), Expect = 6e-07
Identities = 32/95 (33%), Positives = 45/95 (47%), Gaps = 10/95 (10%)
Query: 294 YLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLSSQLQILVLG 353
L LE N L S G + L L LSL NQ + +LP + + ++L IL L
Sbjct: 32 RLELESNKLQSLPH---GVFDKLTQ---LTKLSLSQNQIQ-SLPDGVFDKLTKLTILYLH 84
Query: 354 TNQLYGSIPSGI-GNLVNLYSLQTEENQFTGSIPK 387
N+L S+P+G+ L L L + NQ S+P
Sbjct: 85 ENKL-QSLPNGVFDKLTQLKELALDTNQLK-SVPD 117
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177 | Back alignment and structure |
|---|
Score = 44.2 bits (105), Expect = 3e-05
Identities = 37/110 (33%), Positives = 52/110 (47%), Gaps = 10/110 (9%)
Query: 76 REINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPA----NLSYCSRLTVLVLGNN 131
+ L +N +Q F +L +L L LS N + +P L+ +LT+L L N
Sbjct: 31 TRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ-SLPDGVFDKLT---KLTILYLHEN 86
Query: 132 KLVGSIPFE-FVSLYKLKQLALPMNNLTGGIPPFLGNLTSLEVVSLAGNP 180
KL S+P F L +LK+LAL N L LTSL+ + L NP
Sbjct: 87 KL-QSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 135
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198 | Back alignment and structure |
|---|
Score = 47.4 bits (113), Expect = 3e-06
Identities = 33/141 (23%), Positives = 61/141 (43%), Gaps = 15/141 (10%)
Query: 77 EINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLTVLVLGNNKLVGS 136
E++ M I+ ++ L+ + L LS N++ KI ++LS L +L LG N +
Sbjct: 29 ELHGMIPPIE-KMDATLSTLKACKHLALSTNNIE-KI-SSLSGMENLRILSLGRNLIK-K 84
Query: 137 IPFEFVSLYKLKQLALPMNNLTGGIPPFLGNLTSLEVVSLAGNPFGGNIPD-----SLGQ 191
I L++L + N + + + L +L V+ ++ N I + L
Sbjct: 85 IENLDAVADTLEELWISYNQIA-SLSG-IEKLVNLRVLYMSNN----KITNWGEIDKLAA 138
Query: 192 LKELKTLGIGGNNLSGSIPPS 212
L +L+ L + GN L +
Sbjct: 139 LDKLEDLLLAGNPLYNDYKEN 159
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 1e-05
Identities = 37/143 (25%), Positives = 58/143 (40%), Gaps = 14/143 (9%)
Query: 314 NSLANCSKLQVLSLGGNQFRGALPHSIANLSS--QLQILVLGTNQLYGSIPSGIGNLVNL 371
+L+ + L+L N I++LS L+IL LG N + I + L
Sbjct: 42 ATLSTLKACKHLALSTNNIE-----KISSLSGMENLRILSLGRNLIK-KIENLDAVADTL 95
Query: 372 YSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFS--GEIPSTLGNLSSLYEIFLGDNNL 429
L NQ S+ + KL+NL+ L N + GEI L L L ++ L N L
Sbjct: 96 EELWISYNQIA-SL-SGIEKLVNLRVLYMSNNKITNWGEI-DKLAALDKLEDLLLAGNPL 152
Query: 430 SGVIPSSLGNLE-RLAILEMFAN 451
+ E R+ +++ N
Sbjct: 153 YNDYKENNATSEYRIEVVKRLPN 175
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198 | Back alignment and structure |
|---|
Score = 45.1 bits (107), Expect = 2e-05
Identities = 37/155 (23%), Positives = 69/155 (44%), Gaps = 16/155 (10%)
Query: 376 TEENQFTGSIPKEMGKLLNLQGLDFGGNHFS-GEIPSTLGNLSSLYEIFLGDNNLSGVIP 434
T ++ ++ + ++ G ++ +TL L + + L NN+ +
Sbjct: 6 TIKDAIRIFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKI-- 63
Query: 435 SSLGNLERLAILEMFANELSGTIPGDIFNISSLSVS---LDLAENHFVGSIPPRIGNLKA 491
SSL +E L IL + N + I N+ +++ + L ++ N + S+ I L
Sbjct: 64 SSLSGMENLRILSLGRNLIK-----KIENLDAVADTLEELWISYNQ-IASLSG-IEKLVN 116
Query: 492 LRCFDVSNNDLS--GEIPSELGLCSSLEEIYLAEN 524
LR +SNN ++ GEI +L LE++ LA N
Sbjct: 117 LRVLYMSNNKITNWGEI-DKLAALDKLEDLLLAGN 150
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198 | Back alignment and structure |
|---|
Score = 44.7 bits (106), Expect = 3e-05
Identities = 31/119 (26%), Positives = 46/119 (38%), Gaps = 8/119 (6%)
Query: 65 LSPQIGNLSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLT 124
+ + L + + L N I+ L + L L L N + KI + L
Sbjct: 40 MDATLSTLKACKHLALSTNNIEKISSLS--GMENLRILSLGRNLIK-KIENLDAVADTLE 96
Query: 125 VLVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLT--GGIPPFLGNLTSLEVVSLAGNPF 181
L + N++ E L L+ L + N +T G I L L LE + LAGNP
Sbjct: 97 ELWISYNQIASLSGIE--KLVNLRVLYMSNNKITNWGEIDK-LAALDKLEDLLLAGNPL 152
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198 | Back alignment and structure |
|---|
Score = 40.1 bits (94), Expect = 9e-04
Identities = 33/157 (21%), Positives = 62/157 (39%), Gaps = 31/157 (19%)
Query: 258 IPISLSNASKLEYVEIASNSFFGKLSVNFGGMKNLSYLILEYNNLGSGESDEMGFMNSLA 317
+ +LS +++ +++N+ K+S + GM+NL L L N + E N A
Sbjct: 40 MDATLSTLKACKHLALSTNNI-EKIS-SLSGMENLRILSLGRNLIKKIE-------NLDA 90
Query: 318 NCSKLQVLSLGGNQFRGALPHSIANLSS--QLQILVLGTNQLYGSIPSGIGNLVNLYSLQ 375
L+ L + NQ S++ + L++L + N++ + I L L L+
Sbjct: 91 VADTLEELWISYNQIA-----SLSGIEKLVNLRVLYMSNNKI--TNWGEIDKLAALDKLE 143
Query: 376 T---EENQFTGSIPKE----------MGKLLNLQGLD 399
N + + +L NL+ LD
Sbjct: 144 DLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174 | Back alignment and structure |
|---|
Score = 46.1 bits (110), Expect = 6e-06
Identities = 27/86 (31%), Positives = 36/86 (41%), Gaps = 10/86 (11%)
Query: 291 NLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLSSQLQIL 350
+ L L N + E G + L N LQ L N+ A+P + + +QL L
Sbjct: 34 DKQRLWLNNNQI---TKLEPGVFDHLVN---LQQLYFNSNKLT-AIPTGVFDKLTQLTQL 86
Query: 351 VLGTNQLYGSIPSGIGNLVNLYSLQT 376
L N L SIP G + NL SL
Sbjct: 87 DLNDNHL-KSIPRGAFD--NLKSLTH 109
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170 | Back alignment and structure |
|---|
Score = 45.7 bits (109), Expect = 7e-06
Identities = 28/86 (32%), Positives = 34/86 (39%), Gaps = 10/86 (11%)
Query: 291 NLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLSSQLQIL 350
L L N + E G + L L L L NQ LP + + +QL L
Sbjct: 31 TTQVLYLYDNQITKLEP---GVFDRLTQ---LTRLDLDNNQLT-VLPAGVFDKLTQLTQL 83
Query: 351 VLGTNQLYGSIPSGIGNLVNLYSLQT 376
L NQL SIP G + NL SL
Sbjct: 84 SLNDNQL-KSIPRGAFD--NLKSLTH 106
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170 | Back alignment and structure |
|---|
Score = 39.5 bits (93), Expect = 8e-04
Identities = 28/92 (30%), Positives = 38/92 (41%), Gaps = 10/92 (10%)
Query: 341 ANLSSQLQILVLGTNQLYGSIPSGI-GNLVNLYSLQTEENQFTGSIPKEMG---KLLNLQ 396
+ + Q+L L NQ+ + G+ L L L + NQ T +P G KL L
Sbjct: 26 TGIPTTTQVLYLYDNQI-TKLEPGVFDRLTQLTRLDLDNNQLT-VLPA--GVFDKLTQLT 81
Query: 397 GLDFGGNHFSGEIPS-TLGNLSSLYEIFLGDN 427
L N IP NL SL I+L +N
Sbjct: 82 QLSLNDNQLKS-IPRGAFDNLKSLTHIWLLNN 112
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362 | Back alignment and structure |
|---|
Score = 43.8 bits (102), Expect = 1e-04
Identities = 30/181 (16%), Positives = 61/181 (33%), Gaps = 16/181 (8%)
Query: 63 GLLSPQIGNLSFLREINLMNNTIQGEIPLEFGRLRRL--ETLLLSDNSLVGKIPANLSYC 120
LSP + + L + + L+ L + L D+ + + ++L
Sbjct: 162 VDLSPVLDAMPLLNNLKIKGTNNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNL 221
Query: 121 SRLTVLVLGNNKLVGSIPFEFVSLY------KLKQLALPMNNLTGGIPPFLGN---LTSL 171
+L + V + F L+ LK L + + L L
Sbjct: 222 EKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQL 281
Query: 172 EVVSLAGNPFGGN----IPDSLGQLKELKTLGIGGNNLSGSIPPSIYNLSFLVIFSVSEN 227
E + ++ + D + ++K LK + + N LS + + S + VS++
Sbjct: 282 ETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQK-SLPMKIDVSDS 340
Query: 228 Q 228
Q
Sbjct: 341 Q 341
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 | Back alignment and structure |
|---|
Score = 43.4 bits (102), Expect = 2e-04
Identities = 50/303 (16%), Positives = 92/303 (30%), Gaps = 47/303 (15%)
Query: 71 NLSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLTVLVLGN 130
NL +L + E + R+L L LS +P + +++ L L
Sbjct: 244 NLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNE-MPILFPFAAQIRKLDLLY 302
Query: 131 NKLVGSIPFEFVS-LYKLKQLALPMNNLT-GGIPPFLGNLTSLEVVSLAGNPFGGNIPDS 188
L + L+ L N + G+ L+ + + + D
Sbjct: 303 ALLETEDHCTLIQKCPNLEVLET-RNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDE 361
Query: 189 LGQL------------KELKTLGIGGNNLS----GSIPPSIYNLSFLVIFSVSENQMHGS 232
G + +EL+ + + ++++ SI + NL + + +
Sbjct: 362 EGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITD 421
Query: 233 LPPSLGLYFPNLKLFQTNENFFSGSIPISLSNASKLEYVEIASNS-FFGKLSVNFGGM-- 289
LP G+ L KL L +++ G
Sbjct: 422 LPLDNGVRSL-------------------LIGCKKLRRFAFYLRQGGLTDLGLSYIGQYS 462
Query: 290 KNLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLSSQLQI 349
N+ +++L Y SDE G M C LQ L + G F + L+
Sbjct: 463 PNVRWMLLGYVGE----SDE-GLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRY 517
Query: 350 LVL 352
L +
Sbjct: 518 LWV 520
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386 | Back alignment and structure |
|---|
Score = 42.0 bits (99), Expect = 4e-04
Identities = 44/275 (16%), Positives = 76/275 (27%), Gaps = 57/275 (20%)
Query: 290 KNLSYLILEYNNLGSGESDE----MGFMNSLANCSKLQVLSLGGNQFRGALPHSIANL-- 343
K+L G + + + +L C KL + L N F + +
Sbjct: 60 KDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLS 119
Query: 344 -SSQLQILVLGTNQL-------------YGSIPSGIGNLVNLYSLQTEENQFTGSIPKEM 389
+ L+ L L N L ++ N L S+ N+ KE
Sbjct: 120 KHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEW 179
Query: 390 GKLL----NLQGLDFGGNHFSGE-----IPSTLGNLSSLYEIFLGDNNLSG----VIPSS 436
K L + N E + L L + L DN + + +
Sbjct: 180 AKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIA 239
Query: 437 LGNLERLAILEMFANELSGTIPGDIFNISSLSVSLDLAENHFVGSIPPRIGNLKALRCFD 496
L + L L + LS +++ + EN L+
Sbjct: 240 LKSWPNLRELGLNDCLLSAR------GAAAVVDAFSKLEN-------------IGLQTLR 280
Query: 497 VSNNDLSGEIPSELGL-----CSSLEEIYLAENFF 526
+ N++ + L L + L N F
Sbjct: 281 LQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF 315
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386 | Back alignment and structure |
|---|
Score = 41.6 bits (98), Expect = 5e-04
Identities = 37/225 (16%), Positives = 73/225 (32%), Gaps = 44/225 (19%)
Query: 393 LNLQGLDFGGNHFSGE----IPSTLGNLSSLYEIFLGDNNLSG----VIPSSLG---NLE 441
+++G + + E + + L S+ EI L N + + ++ +LE
Sbjct: 4 FSIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLE 63
Query: 442 RLAILEMFANELSGTIPGDIFNISS-LSV-----SLDLAENHF----VGSIPPRIGNLKA 491
++F + IP + + L ++ L++N F + +
Sbjct: 64 IAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTP 123
Query: 492 LRCFDVSNNDLSGE-------------IPSELGLCSSLEEIYLAENFFNG----FIPSFF 534
L + NN L + + + L I N F
Sbjct: 124 LEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF 183
Query: 535 RTSRGIRKVDLSRNNF--FGQIPIFLEAL----SLEYLNLSFNDF 573
++ R + V + +N G + LE L L+ L+L N F
Sbjct: 184 QSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTF 228
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386 | Back alignment and structure |
|---|
Score = 41.2 bits (97), Expect = 8e-04
Identities = 40/325 (12%), Positives = 88/325 (27%), Gaps = 80/325 (24%)
Query: 289 MKNLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLSSQLQ 348
++ ++L N +G+ + + +A+ L++ L
Sbjct: 31 DDSVKEIVLSGNTIGTEAARWLSEN--IASKKDLEIAEFSDIFTGRVKDEIPEALRL--- 85
Query: 349 ILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSIPKEMGKLL----NLQGLDFGGNH 404
+ + L++++ +N F + + + L L+ L N
Sbjct: 86 ------------LLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNG 133
Query: 405 FSGE-------------IPSTLGNLSSLYEIFLGDNNLSGV----IPSSLGNLERLAILE 447
+ + N L I G N L + + L ++
Sbjct: 134 LGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVK 193
Query: 448 MFANELSGTIPGDIFNISSLSVSLDLAENHFVGSIPPRIGNLKALRCFDVSNNDLSGE-- 505
M N I + L E + + L+ D+ +N +
Sbjct: 194 MVQN-----------GIRPEGIEHLLLEG---------LAYCQELKVLDLQDNTFTHLGS 233
Query: 506 --IPSELGLCSSLEEIYLAEN---------FFNGFIPSFFRTSRGIRKVDLSRNNFFGQ- 553
+ L +L E+ L + + F ++ + L N
Sbjct: 234 SALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIG---LQTLRLQYNEIELDA 290
Query: 554 IPIFLEAL-----SLEYLNLSFNDF 573
+ + L +L L+ N F
Sbjct: 291 VRTLKTVIDEKMPDLLFLELNGNRF 315
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386 | Back alignment and structure |
|---|
Score = 41.2 bits (97), Expect = 8e-04
Identities = 60/365 (16%), Positives = 117/365 (32%), Gaps = 76/365 (20%)
Query: 69 IGNLSFLREINLMNNTIQGE----IPLEFGRLRRLETLLLSDNSL----VGKIPANLSYC 120
+ S + +L + I E + ++ ++LS N++ + N++
Sbjct: 1 MARFS-IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASK 59
Query: 121 SRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTGGIPPFLGNLTSLEVVSLAGNP 180
L + + G + E L+ L L L V L+ N
Sbjct: 60 KDLEIAEFSDIFT-GRVKDEIPEA--LRLLL-----------QALLKCPKLHTVRLSDNA 105
Query: 181 FGGN----IPDSLGQLKELKTLGIGGNNLSGSIPPSIYNLSFLVIFSVSENQMHGSLPPS 236
FG + D L + L+ L + N L P + ++ + + +
Sbjct: 106 FGPTAQEPLIDFLSKHTPLEHLYLHNNGLG---PQAGAKIARALQELAVNKKAKNA---- 158
Query: 237 LGLYFPNLKLFQTNENFFSGSIPISLSNASKLEYVEIASNSFFGKLSVNFGGMKNLSYLI 296
P L+ N + + + L +
Sbjct: 159 -----PPLRSIICGRNRLENGSMKEWAKT----------------FQSH----RLLHTVK 193
Query: 297 LEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQF--RGA--LPHSIANLSSQLQILVL 352
+ N + E E + LA C +L+VL L N F G+ L ++ + + L+ L L
Sbjct: 194 MVQNGIRP-EGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPN-LRELGL 251
Query: 353 GTNQLYG----SIPSGIGNLVN--LYSLQTEENQFTGSIPKEMGKLL-----NLQGLDFG 401
L ++ L N L +L+ + N+ + + ++ +L L+
Sbjct: 252 NDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELN 311
Query: 402 GNHFS 406
GN FS
Sbjct: 312 GNRFS 316
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 627 | |||
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 100.0 | |
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 100.0 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 100.0 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 100.0 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 100.0 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 100.0 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 100.0 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 100.0 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 100.0 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 100.0 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 100.0 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 100.0 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 100.0 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 100.0 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 100.0 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 100.0 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 100.0 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 100.0 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 100.0 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 100.0 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 100.0 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 100.0 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 100.0 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 100.0 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 100.0 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 100.0 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 100.0 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 100.0 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 100.0 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 100.0 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 100.0 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 100.0 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 100.0 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 100.0 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 100.0 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 100.0 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 100.0 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 100.0 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 100.0 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 100.0 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 100.0 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 100.0 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 99.97 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 99.97 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 99.97 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 99.97 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 99.97 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 99.97 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 99.97 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.96 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 99.96 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.96 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 99.95 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.95 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.95 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.95 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 99.95 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.95 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.94 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.94 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.94 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.94 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.94 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.93 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 99.93 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.93 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 99.93 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.93 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.93 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.92 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.92 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 99.92 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.92 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.91 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.91 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 99.9 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 99.89 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 99.89 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 99.89 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 99.89 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.88 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 99.88 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 99.88 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 99.88 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 99.87 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 99.87 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 99.87 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 99.86 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 99.86 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 99.86 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 99.86 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.86 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.85 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.84 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 99.83 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 99.83 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 99.82 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 99.81 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 99.8 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 99.78 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 99.77 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 99.77 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 99.77 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 99.77 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 99.76 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 99.75 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 99.74 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 99.74 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 99.74 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 99.74 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 99.73 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 99.72 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 99.71 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 99.7 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 99.7 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 99.69 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 99.69 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 99.68 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.67 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 99.66 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 99.65 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.65 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.64 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 99.64 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 99.62 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.61 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 99.6 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 99.6 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.58 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 99.58 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 99.57 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 99.57 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.56 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 99.56 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 99.55 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 99.55 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 99.5 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 99.47 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 99.44 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 99.42 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 99.42 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 99.4 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 99.38 | |
| 4gt6_A | 394 | Cell surface protein; leucine rich repeats, putati | 99.36 | |
| 4gt6_A | 394 | Cell surface protein; leucine rich repeats, putati | 99.36 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 99.35 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 99.28 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 99.25 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 99.17 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 99.15 | |
| 4h09_A | 379 | Hypothetical leucine rich repeat protein; two LRR_ | 99.08 | |
| 4h09_A | 379 | Hypothetical leucine rich repeat protein; two LRR_ | 99.02 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 98.97 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 98.76 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 98.43 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 98.36 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 98.19 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 98.14 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 98.1 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 98.09 | |
| 1pgv_A | 197 | TMD-1, tropomodulin TMD-1; structural genomics, PS | 97.46 | |
| 1pgv_A | 197 | TMD-1, tropomodulin TMD-1; structural genomics, PS | 97.28 | |
| 3rfe_A | 130 | Platelet glycoprotein IB beta chain; platelet surf | 96.71 | |
| 3rfe_A | 130 | Platelet glycoprotein IB beta chain; platelet surf | 96.41 |
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-75 Score=652.10 Aligned_cols=593 Identities=32% Similarity=0.490 Sum_probs=502.9
Q ss_pred HHhhhcCCHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccccee--------ecCCCCccee---cc----------
Q 037951 8 LLQVAAFEEGDLAALQAFKSMISHDPQGILNSWNDSRHFCEWEGITC--------DLRSKALSGL---LS---------- 66 (627)
Q Consensus 8 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~w~~~~~~c~~~~~~c--------~l~~~~l~~~---~~---------- 66 (627)
.++.+++.++|++||++||+.+. ||. ++.+|+...+||.|.||+| |++++.+.|. ++
T Consensus 3 ~~~~~~~~~~~~~all~~k~~~~-~~~-~l~~W~~~~~~C~w~gv~C~~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~ 80 (768)
T 3rgz_A 3 QASPSQSLYREIHQLISFKDVLP-DKN-LLPDWSSNKNPCTFDGVTCRDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLE 80 (768)
T ss_dssp -----CCHHHHHHHHHHHHTTCS-CTT-SSTTCCTTSCGGGSTTEEEETTEEEEEECTTSCCCEEHHHHHHHTTTCTTCC
T ss_pred cCccccCCHHHHHHHHHHHhhCC-Ccc-cccCCCCCCCCcCCcceEECCCcEEEEECCCCCcCCccCccChhHhccCccc
Confidence 45667778889999999999997 777 8999998889999999999 5667777775 33
Q ss_pred -------------cccCCCCCCCEEECCCCCCcccCCc--ccCCCCCCCEEeCCCCcCcccCCccc-cCCCCCCEEEccC
Q 037951 67 -------------PQIGNLSFLREINLMNNTIQGEIPL--EFGRLRRLETLLLSDNSLVGKIPANL-SYCSRLTVLVLGN 130 (627)
Q Consensus 67 -------------~~l~~l~~L~~L~Ls~~~~~~~~~~--~~~~l~~L~~L~L~~n~i~~~~~~~~-~~l~~L~~L~ls~ 130 (627)
..+.++++|++|+|++|.+.+.+|. .++++++|++|++++|.+.+..|..+ .++++|++|++++
T Consensus 81 ~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~ 160 (768)
T 3rgz_A 81 SLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSA 160 (768)
T ss_dssp EEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCS
T ss_pred ccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCC
Confidence 4677888899999999988887777 78888888888888888877666654 6667777777777
Q ss_pred ccccccCCcc-------------------------ccCCCCCCeeeCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCC
Q 037951 131 NKLVGSIPFE-------------------------FVSLYKLKQLALPMNNLTGGIPPFLGNLTSLEVVSLAGNPFGGNI 185 (627)
Q Consensus 131 n~l~~~~~~~-------------------------l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~ 185 (627)
|++++..+.. +..+++|++|++++|.+.+.+|. ++++++|++|++++|.+.+..
T Consensus 161 n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~ 239 (768)
T 3rgz_A 161 NSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDF 239 (768)
T ss_dssp SCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCH
T ss_pred CccCCcCChhhhhhccCCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcc
Confidence 7665444332 25678888888899999877777 999999999999999999888
Q ss_pred CCccCCCCCccEEEeeCccccccCCccccCCCCCcEEEeecccCccCCChhhhhcCCCCceeccCCccccccCCccccCC
Q 037951 186 PDSLGQLKELKTLGIGGNNLSGSIPPSIYNLSFLVIFSVSENQMHGSLPPSLGLYFPNLKLFQTNENFFSGSIPISLSNA 265 (627)
Q Consensus 186 ~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~ 265 (627)
|..+..+++|++|++++|.+.+.+|.. .+++|+.|++++|.+.+.+|..+...+++|++|++++|.+++.+|..+..+
T Consensus 240 ~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l 317 (768)
T 3rgz_A 240 SRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSC 317 (768)
T ss_dssp HHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGC
T ss_pred cHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcC
Confidence 889999999999999999988777665 788888888888888888888877656888888888888888888888888
Q ss_pred CCCcEeecccccccccCccC-cCCCCCcCEEeccCccCCCCCCCCc-------------------cccccCCC--CCccc
Q 037951 266 SKLEYVEIASNSFFGKLSVN-FGGMKNLSYLILEYNNLGSGESDEM-------------------GFMNSLAN--CSKLQ 323 (627)
Q Consensus 266 ~~L~~L~l~~~~~~~~~~~~-l~~l~~L~~L~l~~n~l~~~~~~~~-------------------~~~~~l~~--~~~L~ 323 (627)
++|++|++++|.+.+.+|.. +..+++|++|++++|.+++..+... ..+..+.. +++|+
T Consensus 318 ~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~ 397 (768)
T 3rgz_A 318 SLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQ 397 (768)
T ss_dssp TTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCC
T ss_pred CCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCcc
Confidence 88888888888887666654 7788888888888887764222111 11222222 67788
Q ss_pred EEEccCcccccccchhHHhccccccEEEeecccccccCcccccCCCCCCEEeCCCCccccccchhhcCCCCCcEeeccCC
Q 037951 324 VLSLGGNQFRGALPHSIANLSSQLQILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGN 403 (627)
Q Consensus 324 ~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n 403 (627)
+|++++|.+++.+|..+..+. +|++|++++|.+++.+|..+..+++|+.|++++|.+++.+|..+..+++|+.|++++|
T Consensus 398 ~L~L~~n~l~~~~p~~l~~l~-~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N 476 (768)
T 3rgz_A 398 ELYLQNNGFTGKIPPTLSNCS-ELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFN 476 (768)
T ss_dssp EEECCSSEEEEECCGGGGGCT-TCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSS
T ss_pred EEECCCCccccccCHHHhcCC-CCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCC
Confidence 999999988888888888887 8999999999999889999999999999999999999889999999999999999999
Q ss_pred cccccCChhhhCCCCCCEEEccCCccccccChhhcCCCCCCEEECcCCcCcccCCccccccccCccEEEccCCccccCCC
Q 037951 404 HFSGEIPSTLGNLSSLYEIFLGDNNLSGVIPSSLGNLERLAILEMFANELSGTIPGDIFNISSLSVSLDLAENHFVGSIP 483 (627)
Q Consensus 404 ~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~ll~~L~l~~n~l~~~~~ 483 (627)
++.+.+|..+..+++|++|++++|++++.+|..+..+++|++|++++|++.+.+|..+..++++ ++|++++|++.|.+|
T Consensus 477 ~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L-~~L~Ls~N~l~g~ip 555 (768)
T 3rgz_A 477 DLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSL-IWLDLNTNLFNGTIP 555 (768)
T ss_dssp CCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTC-CEEECCSSEEESBCC
T ss_pred cccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCC-CEEECCCCccCCcCC
Confidence 9998999999999999999999999999999999999999999999999999999999999999 899999999887666
Q ss_pred cc----------------------------------------------------------------------ccCCCCCC
Q 037951 484 PR----------------------------------------------------------------------IGNLKALR 493 (627)
Q Consensus 484 ~~----------------------------------------------------------------------l~~l~~L~ 493 (627)
.. +..+++|+
T Consensus 556 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~ 635 (768)
T 3rgz_A 556 AAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMM 635 (768)
T ss_dssp GGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCC
T ss_pred hHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhcccccc
Confidence 53 33457899
Q ss_pred EEEccCCcccccCCccccCCCCCCEEECCCCcccccCChhccCCCCCCEEECCCCcCccccchhcccCc-CCeeeCcCCc
Q 037951 494 CFDVSNNDLSGEIPSELGLCSSLEEIYLAENFFNGFIPSFFRTSRGIRKVDLSRNNFFGQIPIFLEALS-LEYLNLSFND 572 (627)
Q Consensus 494 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~~~-L~~L~ls~n~ 572 (627)
.||+++|++++.+|..++.++.|+.|+|++|.+++.+|..++.+++|++||+++|++++.+|..+..++ |++||+++|+
T Consensus 636 ~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~ 715 (768)
T 3rgz_A 636 FLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNN 715 (768)
T ss_dssp EEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSE
T ss_pred EEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCc
Confidence 999999999999999999999999999999999999999999999999999999999999999999998 9999999999
Q ss_pred ccccCCCCCccCCCCccccccCCCCcccCCCCCCCCCCC
Q 037951 573 FEGRLPTRGIFANASAISVGGCNRLCGGIHELQLPKCPE 611 (627)
Q Consensus 573 l~~~~p~~~~~~~l~~l~~~~n~~l~~~~~~l~i~~c~~ 611 (627)
++|.+|.++.+.++...++.|||.+||.+ +..|+.
T Consensus 716 l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~----l~~C~~ 750 (768)
T 3rgz_A 716 LSGPIPEMGQFETFPPAKFLNNPGLCGYP----LPRCDP 750 (768)
T ss_dssp EEEECCSSSSGGGSCGGGGCSCTEEESTT----SCCCCS
T ss_pred ccccCCCchhhccCCHHHhcCCchhcCCC----CcCCCC
Confidence 99999999999999999999999999974 347863
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-63 Score=554.02 Aligned_cols=519 Identities=33% Similarity=0.477 Sum_probs=435.2
Q ss_pred CCCCCEEECCCCCCcccCCcccCCCCCCCEEeCCCCcCcccCCc--cccCCCCCCEEEccCccccccCCccc-cCCCCCC
Q 037951 72 LSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPA--NLSYCSRLTVLVLGNNKLVGSIPFEF-VSLYKLK 148 (627)
Q Consensus 72 l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~l-~~l~~L~ 148 (627)
+++|+.++++.+.+. ..|..|+++++|++|+|++|.+++.+|. .++++++|++|++++|.+.+..|..+ .++++|+
T Consensus 76 L~~L~~l~~~~~~~~-~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~ 154 (768)
T 3rgz_A 76 LTGLESLFLSNSHIN-GSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLE 154 (768)
T ss_dssp CTTCCEEECTTSCEE-ECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCS
T ss_pred cCcccccCCcCCCcC-CCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCC
Confidence 345555555555543 3557899999999999999999988888 89999999999999999987777766 7889999
Q ss_pred eeeCCCCCCCCCCCCC-------------------------CCCCCCCCEEECCCCCCCCCCCCccCCCCCccEEEeeCc
Q 037951 149 QLALPMNNLTGGIPPF-------------------------LGNLTSLEVVSLAGNPFGGNIPDSLGQLKELKTLGIGGN 203 (627)
Q Consensus 149 ~L~l~~n~l~~~~~~~-------------------------l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n 203 (627)
+|++++|.+++..+.. +.++++|++|++++|.+.+.+|. +.++++|++|++++|
T Consensus 155 ~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n 233 (768)
T 3rgz_A 155 VLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGN 233 (768)
T ss_dssp EEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSS
T ss_pred EEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCC
Confidence 9999988876543322 25678899999999999987776 999999999999999
Q ss_pred cccccCCccccCCCCCcEEEeecccCccCCChhhhhcCCCCceeccCCccccccCCccccCC-CCCcEeecccccccccC
Q 037951 204 NLSGSIPPSIYNLSFLVIFSVSENQMHGSLPPSLGLYFPNLKLFQTNENFFSGSIPISLSNA-SKLEYVEIASNSFFGKL 282 (627)
Q Consensus 204 ~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~~~ 282 (627)
.+++.+|..+..+++|+.|++++|.+.+.+|.. .+++|++|++++|.+++.+|..+... ++|++|++++|.+.+..
T Consensus 234 ~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~---~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~ 310 (768)
T 3rgz_A 234 KLSGDFSRAISTCTELKLLNISSNQFVGPIPPL---PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAV 310 (768)
T ss_dssp CCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC---CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECC
T ss_pred cCCCcccHHHhcCCCCCEEECCCCcccCccCcc---ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCcc
Confidence 999989999999999999999999999888876 48999999999999999999988775 99999999999999999
Q ss_pred ccCcCCCCCcCEEeccCccCCCCCCCCcccccc-CCCCCcccEEEccCcccccccchhHHhccc----------------
Q 037951 283 SVNFGGMKNLSYLILEYNNLGSGESDEMGFMNS-LANCSKLQVLSLGGNQFRGALPHSIANLSS---------------- 345 (627)
Q Consensus 283 ~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~-l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~---------------- 345 (627)
|..++.+++|++|++++|.+.+ .++.. +..+++|++|++++|.+++.+|..+.....
T Consensus 311 p~~~~~l~~L~~L~L~~n~l~~------~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~ 384 (768)
T 3rgz_A 311 PPFFGSCSLLESLALSSNNFSG------ELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPI 384 (768)
T ss_dssp CGGGGGCTTCCEEECCSSEEEE------ECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEEC
T ss_pred chHHhcCCCccEEECCCCcccC------cCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCc
Confidence 9999999999999999999874 22322 667788888888888877777776665532
Q ss_pred ----------cccEEEeecccccccCcccccCCCCCCEEeCCCCccccccchhhcCCCCCcEeeccCCcccccCChhhhC
Q 037951 346 ----------QLQILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLGN 415 (627)
Q Consensus 346 ----------~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~ 415 (627)
+|++|++++|.+++.+|..+..+++|+.|++++|.+++..|..+..+++|+.|++++|.+.+.+|..+..
T Consensus 385 ~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~ 464 (768)
T 3rgz_A 385 LPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMY 464 (768)
T ss_dssp CTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGG
T ss_pred ChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcC
Confidence 4555666666666666777777788888888888887777888888888888888888888888888888
Q ss_pred CCCCCEEEccCCccccccChhhcCCCCCCEEECcCCcCcccCCccccccccCccEEEccCCccccCCCccccCCCCCCEE
Q 037951 416 LSSLYEIFLGDNNLSGVIPSSLGNLERLAILEMFANELSGTIPGDIFNISSLSVSLDLAENHFVGSIPPRIGNLKALRCF 495 (627)
Q Consensus 416 ~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~ll~~L~l~~n~l~~~~~~~l~~l~~L~~L 495 (627)
+++|++|++++|.+++..|..+..+++|++|++++|++.+.+|..+..++++ ++|++++|++.+.+|..+.++++|++|
T Consensus 465 l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L-~~L~L~~N~l~~~~p~~l~~l~~L~~L 543 (768)
T 3rgz_A 465 VKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENL-AILKLSNNSFSGNIPAELGDCRSLIWL 543 (768)
T ss_dssp CTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTC-CEEECCSSCCEEECCGGGGGCTTCCEE
T ss_pred CCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCC-CEEECCCCcccCcCCHHHcCCCCCCEE
Confidence 8888888888888888888888888888888888888888888888888888 888888888888888888888899999
Q ss_pred EccCCcccccCCccc-----------------------------------------------------------------
Q 037951 496 DVSNNDLSGEIPSEL----------------------------------------------------------------- 510 (627)
Q Consensus 496 ~Ls~n~l~~~~~~~l----------------------------------------------------------------- 510 (627)
++++|++++.+|..+
T Consensus 544 ~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~ 623 (768)
T 3rgz_A 544 DLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGH 623 (768)
T ss_dssp ECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEE
T ss_pred ECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceeccc
Confidence 999888877666543
Q ss_pred -----cCCCCCCEEECCCCcccccCChhccCCCCCCEEECCCCcCccccchhcccCc-CCeeeCcCCcccccCCCC-Ccc
Q 037951 511 -----GLCSSLEEIYLAENFFNGFIPSFFRTSRGIRKVDLSRNNFFGQIPIFLEALS-LEYLNLSFNDFEGRLPTR-GIF 583 (627)
Q Consensus 511 -----~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~~~-L~~L~ls~n~l~~~~p~~-~~~ 583 (627)
+.+++|++|++++|++++.+|..++.+++|+.|++++|.+++.+|..+..++ |+.||+++|+++|.+|.. ..+
T Consensus 624 ~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l 703 (768)
T 3rgz_A 624 TSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSAL 703 (768)
T ss_dssp CCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGC
T ss_pred CchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCC
Confidence 3356788899999999999999999999999999999999999999999888 999999999999999954 667
Q ss_pred CCCCccccccCCCCcccCCC
Q 037951 584 ANASAISVGGCNRLCGGIHE 603 (627)
Q Consensus 584 ~~l~~l~~~~n~~l~~~~~~ 603 (627)
++|+.+++++|+ +.|.+|+
T Consensus 704 ~~L~~L~ls~N~-l~g~iP~ 722 (768)
T 3rgz_A 704 TMLTEIDLSNNN-LSGPIPE 722 (768)
T ss_dssp CCCSEEECCSSE-EEEECCS
T ss_pred CCCCEEECcCCc-ccccCCC
Confidence 889999999995 7788775
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-57 Score=502.00 Aligned_cols=542 Identities=21% Similarity=0.203 Sum_probs=401.5
Q ss_pred ecCCCCcceecccccCCCCCCCEEECCCCCCcccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEEccCcccc
Q 037951 55 DLRSKALSGLLSPQIGNLSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLTVLVLGNNKLV 134 (627)
Q Consensus 55 ~l~~~~l~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~ 134 (627)
+++++.+++..+..|.++++|++|++++|.+++..|.+|.++++|++|++++|.+++..+..|+++++|++|++++|++.
T Consensus 31 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~ 110 (680)
T 1ziw_A 31 NLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQ 110 (680)
T ss_dssp ECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC
T ss_pred ECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccC
Confidence 66666666666666777777777777777776666666677777777777777766444445677777777777777776
Q ss_pred ccCCccccCCCCCCeeeCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCccC--CCCCccEEEeeCccccccCCcc
Q 037951 135 GSIPFEFVSLYKLKQLALPMNNLTGGIPPFLGNLTSLEVVSLAGNPFGGNIPDSLG--QLKELKTLGIGGNNLSGSIPPS 212 (627)
Q Consensus 135 ~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~--~l~~L~~L~l~~n~~~~~~~~~ 212 (627)
+..+..|+++++|++|++++|.+++..+..++++++|++|++++|.+++..+..+. .+++|++|++++|.+++..|..
T Consensus 111 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~ 190 (680)
T 1ziw_A 111 KIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGC 190 (680)
T ss_dssp CCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTG
T ss_pred ccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhh
Confidence 55556677777777777777777666666666777777777777776655444433 3466777777777666555555
Q ss_pred ccCC---------------------------CCCcEEEeecccCccCCChhhhhcC--CCCceeccCCccccccCCcccc
Q 037951 213 IYNL---------------------------SFLVIFSVSENQMHGSLPPSLGLYF--PNLKLFQTNENFFSGSIPISLS 263 (627)
Q Consensus 213 l~~l---------------------------~~L~~L~l~~n~l~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~l~ 263 (627)
+..+ ++|+.|++++|.+.+..|..+.. + ++|++|++++|.+++..+..+.
T Consensus 191 ~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~-l~~~~L~~L~Ls~n~l~~~~~~~~~ 269 (680)
T 1ziw_A 191 FHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLG-LKWTNLTMLDLSYNNLNVVGNDSFA 269 (680)
T ss_dssp GGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGG-GGGSCCCEEECTTSCCCEECTTTTT
T ss_pred hhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhc-cCcCCCCEEECCCCCcCccCccccc
Confidence 4433 34455555555555544444433 2 3467777777766666666666
Q ss_pred CCCCCcEeecccccccccCccCcCCCCCcCEEeccCccCCCCCCCCcccc----ccCCCCCcccEEEccCcccccccchh
Q 037951 264 NASKLEYVEIASNSFFGKLSVNFGGMKNLSYLILEYNNLGSGESDEMGFM----NSLANCSKLQVLSLGGNQFRGALPHS 339 (627)
Q Consensus 264 ~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~----~~l~~~~~L~~L~l~~n~~~~~~~~~ 339 (627)
.+++|++|++++|.+.+..+..+.++++|+.|+++++....... ...++ ..+..+++|++|++++|.+++..+..
T Consensus 270 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~-~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 348 (680)
T 1ziw_A 270 WLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSIS-LASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNM 348 (680)
T ss_dssp TCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC-------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTT
T ss_pred CcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccc-cccccccChhhcccCCCCCEEECCCCccCCCChhH
Confidence 67777777777776666666666677777777776553321000 00111 15667888889999888888777777
Q ss_pred HHhccccccEEEeecccccc--cCcccccC--CCCCCEEeCCCCccccccchhhcCCCCCcEeeccCCcccccCC-hhhh
Q 037951 340 IANLSSQLQILVLGTNQLYG--SIPSGIGN--LVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIP-STLG 414 (627)
Q Consensus 340 ~~~~~~~L~~L~l~~n~l~~--~~~~~~~~--l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~-~~~~ 414 (627)
+..+. +|++|++++|.+.. .....+.. .++|+.|++++|++++..+..+..+++|+.|++++|.+.+.++ ..|.
T Consensus 349 ~~~l~-~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 427 (680)
T 1ziw_A 349 FTGLI-NLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWR 427 (680)
T ss_dssp TTTCT-TCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGT
T ss_pred hcccc-CCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCccccc
Confidence 77776 78999998886532 12222322 3588999999999998888899999999999999999987665 6788
Q ss_pred CCCCCCEEEccCCccccccChhhcCCCCCCEEECcCCcCc--ccCCccccccccCccEEEccCCccccCCCccccCCCCC
Q 037951 415 NLSSLYEIFLGDNNLSGVIPSSLGNLERLAILEMFANELS--GTIPGDIFNISSLSVSLDLAENHFVGSIPPRIGNLKAL 492 (627)
Q Consensus 415 ~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~--~~~~~~~~~~~~ll~~L~l~~n~l~~~~~~~l~~l~~L 492 (627)
.+++|++|++++|++++..+..+..+++|+.|++++|.+. +.+|..+..++++ ++|++++|++.+..+..+..+++|
T Consensus 428 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L-~~L~Ls~N~l~~i~~~~~~~l~~L 506 (680)
T 1ziw_A 428 GLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNL-TILDLSNNNIANINDDMLEGLEKL 506 (680)
T ss_dssp TCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTC-CEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCC-CEEECCCCCCCcCChhhhcccccc
Confidence 9999999999999999888889999999999999999886 5678889999999 999999999998888889999999
Q ss_pred CEEEccCCcccccCC--------ccccCCCCCCEEECCCCcccccCChhccCCCCCCEEECCCCcCccccchhcccCc-C
Q 037951 493 RCFDVSNNDLSGEIP--------SELGLCSSLEEIYLAENFFNGFIPSFFRTSRGIRKVDLSRNNFFGQIPIFLEALS-L 563 (627)
Q Consensus 493 ~~L~Ls~n~l~~~~~--------~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~~~-L 563 (627)
++|++++|++++..+ ..+..+++|++|++++|.++...+..|.++++|+.|++++|.+.+..+..+..+. |
T Consensus 507 ~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L 586 (680)
T 1ziw_A 507 EILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSL 586 (680)
T ss_dssp CEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCC
Confidence 999999999985422 2378899999999999999976667799999999999999999976666677777 9
Q ss_pred CeeeCcCCcccccCCCC-C-ccCCCCccccccCCCCccc
Q 037951 564 EYLNLSFNDFEGRLPTR-G-IFANASAISVGGCNRLCGG 600 (627)
Q Consensus 564 ~~L~ls~n~l~~~~p~~-~-~~~~l~~l~~~~n~~l~~~ 600 (627)
+.|++++|++++..|.. + .+++++.+++.+||+.|++
T Consensus 587 ~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c 625 (680)
T 1ziw_A 587 KSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTC 625 (680)
T ss_dssp CEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCC
T ss_pred CEEECCCCcCCccChhHhcccccccCEEEccCCCcccCC
Confidence 99999999999876643 2 5789999999999999976
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-56 Score=485.87 Aligned_cols=510 Identities=19% Similarity=0.157 Sum_probs=349.2
Q ss_pred cceeecCCCCcceecccccCCCCCCCEEECCCCCCcccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEEccC
Q 037951 51 GITCDLRSKALSGLLSPQIGNLSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLTVLVLGN 130 (627)
Q Consensus 51 ~~~c~l~~~~l~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ls~ 130 (627)
....++++.+++. +|..+. +++++|++++|.+++..|.+|.++++|++|++++|.+.+..|..|+++++|++|++++
T Consensus 14 ~~~~~c~~~~l~~-iP~~l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~ 90 (606)
T 3t6q_A 14 NKTYNCENLGLNE-IPGTLP--NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTA 90 (606)
T ss_dssp TTEEECTTSCCSS-CCTTSC--TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTT
T ss_pred CceEECCCCCccc-CcCCCC--CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCC
Confidence 3345667777664 355554 3799999999999988889999999999999999999988899999999999999999
Q ss_pred ccccccCCccccCCCCCCeeeCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCccCCCCCccEEEeeCccccccCC
Q 037951 131 NKLVGSIPFEFVSLYKLKQLALPMNNLTGGIPPFLGNLTSLEVVSLAGNPFGGNIPDSLGQLKELKTLGIGGNNLSGSIP 210 (627)
Q Consensus 131 n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~ 210 (627)
|++++..|..|+++++|++|++++|.+++..+..++++++|++|++++|.+.+.....+..+++|++|++++|.+++..+
T Consensus 91 n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 170 (606)
T 3t6q_A 91 NPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSK 170 (606)
T ss_dssp CCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECH
T ss_pred CcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccCh
Confidence 99998889999999999999999999997768889999999999999999997554556669999999999999998878
Q ss_pred ccccCCCCCc--EEEeecccCccCCChhhhhcCCCCceeccCCccccccCCccccCCC----------------------
Q 037951 211 PSIYNLSFLV--IFSVSENQMHGSLPPSLGLYFPNLKLFQTNENFFSGSIPISLSNAS---------------------- 266 (627)
Q Consensus 211 ~~l~~l~~L~--~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~---------------------- 266 (627)
..++.+++|+ .+++++|.+.+..|..+. ..+++.++++++... +..+..+.
T Consensus 171 ~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~--~~~L~~L~l~~~~~~---~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~ 245 (606)
T 3t6q_A 171 EDMSSLQQATNLSLNLNGNDIAGIEPGAFD--SAVFQSLNFGGTQNL---LVIFKGLKNSTIQSLWLGTFEDMDDEDISP 245 (606)
T ss_dssp HHHHTTTTCCSEEEECTTCCCCEECTTTTT--TCEEEEEECTTCSCH---HHHHHHTTTCEEEEEECCCCTTSCCCCCCG
T ss_pred hhhhhhcccceeEEecCCCccCccChhHhh--hccccccccCCchhH---HHHhhhccccchhheechhhccccccccCh
Confidence 8899999999 899999999977766654 467888888877521 11111111
Q ss_pred ---------CCcEeecccccccccCccCcCCCCCcCEEeccCccCCCCCCCCccccccCCCCCcccEEEccCcccccccc
Q 037951 267 ---------KLEYVEIASNSFFGKLSVNFGGMKNLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGALP 337 (627)
Q Consensus 267 ---------~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~ 337 (627)
+++.+++++|.+.+..+..|+.+++|++|++++|.++. ++..+..+++|++|++++|.+.+..|
T Consensus 246 ~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-------lp~~l~~l~~L~~L~l~~n~l~~~~~ 318 (606)
T 3t6q_A 246 AVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSE-------LPSGLVGLSTLKKLVLSANKFENLCQ 318 (606)
T ss_dssp GGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSC-------CCSSCCSCTTCCEEECTTCCCSBGGG
T ss_pred hHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccCC-------CChhhcccccCCEEECccCCcCcCch
Confidence 45666666666655555556666666666666665553 22345555666666666666665555
Q ss_pred hhHHhccccccEEEeecccccccCcc-cccCCCCCCEEeCCCCcccccc--chhhcCCCCCcEeeccCCcccccCChhhh
Q 037951 338 HSIANLSSQLQILVLGTNQLYGSIPS-GIGNLVNLYSLQTEENQFTGSI--PKEMGKLLNLQGLDFGGNHFSGEIPSTLG 414 (627)
Q Consensus 338 ~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~~~~~~--~~~~~~l~~L~~L~L~~n~~~~~~~~~~~ 414 (627)
..+..++ +|++|++++|.+.+.++. .+..+++|+.|++++|.+++.. +..+..+++|+.|++++|.+.+..+..+.
T Consensus 319 ~~~~~l~-~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 397 (606)
T 3t6q_A 319 ISASNFP-SLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFK 397 (606)
T ss_dssp GCGGGCT-TCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTT
T ss_pred hhhhccC-cCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhc
Confidence 5555554 566666666655543333 3555666666666666665443 44555666666666666666655555566
Q ss_pred CCCCCCEEEccCCccccccCh-hhcCCCCCCEEECcCCcCcccCCccccccccCccEEEccCCccccC---CCccccCCC
Q 037951 415 NLSSLYEIFLGDNNLSGVIPS-SLGNLERLAILEMFANELSGTIPGDIFNISSLSVSLDLAENHFVGS---IPPRIGNLK 490 (627)
Q Consensus 415 ~~~~L~~L~l~~n~~~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~ll~~L~l~~n~l~~~---~~~~l~~l~ 490 (627)
.+++|++|++++|.+++..+. .+..+++|+.|++++|.+.+..|..+..++++ ++|++++|++.+. .+..+..++
T Consensus 398 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-~~L~L~~n~l~~~~~~~~~~~~~l~ 476 (606)
T 3t6q_A 398 ECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPAL-QHLNLQGNHFPKGNIQKTNSLQTLG 476 (606)
T ss_dssp TCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTC-CEEECTTCBCGGGEECSSCGGGGCT
T ss_pred CCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCC-CEEECCCCCCCccccccchhhccCC
Confidence 666666666666665544332 25556666666666666655555555555555 5666666665541 223455566
Q ss_pred CCCEEEccCCcccccCCccccCCCCCCEEECCCCcccccCChhccCCCCCCEEECCCCcCccccchhcccCc-CCeeeCc
Q 037951 491 ALRCFDVSNNDLSGEIPSELGLCSSLEEIYLAENFFNGFIPSFFRTSRGIRKVDLSRNNFFGQIPIFLEALS-LEYLNLS 569 (627)
Q Consensus 491 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~~~-L~~L~ls 569 (627)
+|++|++++|++++..|..+..+++|++|++++|++++..|+.+..++.| .|++++|.+++..|..+..++ |++|+++
T Consensus 477 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~ 555 (606)
T 3t6q_A 477 RLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLR 555 (606)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECT
T ss_pred CccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCC
Confidence 66666666666665555566666666666666666666666666666666 666666666655555555554 6666666
Q ss_pred CCcccccCC
Q 037951 570 FNDFEGRLP 578 (627)
Q Consensus 570 ~n~l~~~~p 578 (627)
+|++....+
T Consensus 556 ~N~~~c~c~ 564 (606)
T 3t6q_A 556 QNPLDCTCS 564 (606)
T ss_dssp TCCEECSGG
T ss_pred CCCccccCC
Confidence 666655443
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-54 Score=480.58 Aligned_cols=518 Identities=21% Similarity=0.221 Sum_probs=447.2
Q ss_pred eecCCCCcceecccccCCCCCCCEEECCCCCCcccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEEccCccc
Q 037951 54 CDLRSKALSGLLSPQIGNLSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLTVLVLGNNKL 133 (627)
Q Consensus 54 c~l~~~~l~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ls~n~l 133 (627)
-+++++.+++..|..|.++++|++|++++|.+++..+.+|+++++|++|++++|++++..|..|+++++|++|++++|.+
T Consensus 54 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 133 (680)
T 1ziw_A 54 LDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGL 133 (680)
T ss_dssp EECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCC
T ss_pred EECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcc
Confidence 38899999999999999999999999999999966566899999999999999999977778899999999999999999
Q ss_pred cccCCccccCCCCCCeeeCCCCCCCCCCCCCCC--CCCCCCEEECCCCCCCCCCCCccCCC-------------------
Q 037951 134 VGSIPFEFVSLYKLKQLALPMNNLTGGIPPFLG--NLTSLEVVSLAGNPFGGNIPDSLGQL------------------- 192 (627)
Q Consensus 134 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~--~l~~L~~L~L~~n~~~~~~~~~l~~l------------------- 192 (627)
++..+..+.++++|++|++++|.+++..+..+. .+++|++|++++|.+.+..+..+..+
T Consensus 134 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~ 213 (680)
T 1ziw_A 134 SSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTE 213 (680)
T ss_dssp SCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHH
T ss_pred cccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHH
Confidence 988888999999999999999999876665543 56899999999999998777766544
Q ss_pred --------CCccEEEeeCccccccCCccccCCCC--CcEEEeecccCccCCChhhhhcCCCCceeccCCccccccCCccc
Q 037951 193 --------KELKTLGIGGNNLSGSIPPSIYNLSF--LVIFSVSENQMHGSLPPSLGLYFPNLKLFQTNENFFSGSIPISL 262 (627)
Q Consensus 193 --------~~L~~L~l~~n~~~~~~~~~l~~l~~--L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l 262 (627)
++|+.|++++|.+.+..+.++..++. |+.|++++|.+.+..|..+.. +++|++|++++|.+.+..+..+
T Consensus 214 ~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~~~~ 292 (680)
T 1ziw_A 214 KLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAW-LPQLEYFFLEYNNIQHLFSHSL 292 (680)
T ss_dssp HHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTT-CTTCCEEECCSCCBSEECTTTT
T ss_pred HHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccC-cccccEeeCCCCccCccChhhh
Confidence 56788888888888888888888755 999999999999777766654 9999999999999999999999
Q ss_pred cCCCCCcEeecccccccc-----cCc----cCcCCCCCcCEEeccCccCCCCCCCCccccccCCCCCcccEEEccCcccc
Q 037951 263 SNASKLEYVEIASNSFFG-----KLS----VNFGGMKNLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFR 333 (627)
Q Consensus 263 ~~~~~L~~L~l~~~~~~~-----~~~----~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~ 333 (627)
..+++|+.++++++...+ .+| ..+..+++|++|++++|.+++.. +..+..+++|++|++++|.+.
T Consensus 293 ~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~------~~~~~~l~~L~~L~Ls~n~~~ 366 (680)
T 1ziw_A 293 HGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIK------SNMFTGLINLKYLSLSNSFTS 366 (680)
T ss_dssp TTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCC------TTTTTTCTTCCEEECTTCBSC
T ss_pred cCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCC------hhHhccccCCcEEECCCCchh
Confidence 999999999999875432 122 36888999999999999998844 346788999999999999754
Q ss_pred cc--cchhHHhcc-ccccEEEeecccccccCcccccCCCCCCEEeCCCCccccccc-hhhcCCCCCcEeeccCCcccccC
Q 037951 334 GA--LPHSIANLS-SQLQILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSIP-KEMGKLLNLQGLDFGGNHFSGEI 409 (627)
Q Consensus 334 ~~--~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~L~~n~~~~~~ 409 (627)
.. ....+.... ++|+.|++++|++++..+..+..+++|+.|++++|.+++.++ ..+.++++|+.|++++|++.+..
T Consensus 367 ~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 446 (680)
T 1ziw_A 367 LRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLT 446 (680)
T ss_dssp CCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECC
T ss_pred hhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeC
Confidence 22 222233221 379999999999999889999999999999999999987665 68899999999999999999888
Q ss_pred ChhhhCCCCCCEEEccCCccc--cccChhhcCCCCCCEEECcCCcCcccCCccccccccCccEEEccCCccccCCC----
Q 037951 410 PSTLGNLSSLYEIFLGDNNLS--GVIPSSLGNLERLAILEMFANELSGTIPGDIFNISSLSVSLDLAENHFVGSIP---- 483 (627)
Q Consensus 410 ~~~~~~~~~L~~L~l~~n~~~--~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~ll~~L~l~~n~l~~~~~---- 483 (627)
+..|..+++|++|++++|.+. +..|..+..+++|+.|++++|.+.+..+..+..+..+ ++|++++|++.+..+
T Consensus 447 ~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L-~~L~Ls~N~l~~~~~~~~~ 525 (680)
T 1ziw_A 447 RNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKL-EILDLQHNNLARLWKHANP 525 (680)
T ss_dssp TTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC-CEEECCSSCCGGGGSTTST
T ss_pred hhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhcccccc-CEEeCCCCCccccchhhcc
Confidence 889999999999999999986 5678889999999999999999996666678888888 999999999986422
Q ss_pred ----ccccCCCCCCEEEccCCcccccCCccccCCCCCCEEECCCCcccccCChhccCCCCCCEEECCCCcCccccchhcc
Q 037951 484 ----PRIGNLKALRCFDVSNNDLSGEIPSELGLCSSLEEIYLAENFFNGFIPSFFRTSRGIRKVDLSRNNFFGQIPIFLE 559 (627)
Q Consensus 484 ----~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~ 559 (627)
..+.++++|++|++++|+++...+..|..+++|+.|++++|.+++..+..|..+++|+.|++++|.+++..|..+.
T Consensus 526 ~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 605 (680)
T 1ziw_A 526 GGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFG 605 (680)
T ss_dssp TSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHH
T ss_pred CCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhc
Confidence 2378899999999999999944345699999999999999999988888889999999999999999988887776
Q ss_pred -cCc-CCeeeCcCCcccccCCC
Q 037951 560 -ALS-LEYLNLSFNDFEGRLPT 579 (627)
Q Consensus 560 -~~~-L~~L~ls~n~l~~~~p~ 579 (627)
.++ |+.+++++|++...-+.
T Consensus 606 ~~~~~L~~l~l~~N~~~c~c~~ 627 (680)
T 1ziw_A 606 PAFRNLTELDMRFNPFDCTCES 627 (680)
T ss_dssp HHHTTCSEEECTTCCCCBCCCC
T ss_pred ccccccCEEEccCCCcccCCcc
Confidence 555 99999999999887653
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-54 Score=474.51 Aligned_cols=510 Identities=21% Similarity=0.197 Sum_probs=446.3
Q ss_pred CEEECCCCCCcccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEEccCccccccCCccccCCCCCCeeeCCCC
Q 037951 76 REINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPMN 155 (627)
Q Consensus 76 ~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n 155 (627)
+.++.++..++ .+|..+. .++++|++++|.+++..|..|+++++|++|++++|++.+..|.+|.++++|++|++++|
T Consensus 15 ~~~~c~~~~l~-~iP~~l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n 91 (606)
T 3t6q_A 15 KTYNCENLGLN-EIPGTLP--NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTAN 91 (606)
T ss_dssp TEEECTTSCCS-SCCTTSC--TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred ceEECCCCCcc-cCcCCCC--CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCC
Confidence 46888888887 6787775 48999999999999888999999999999999999999888999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCccCCCCCccEEEeeCccccccCCccccCCCCCcEEEeecccCccCCCh
Q 037951 156 NLTGGIPPFLGNLTSLEVVSLAGNPFGGNIPDSLGQLKELKTLGIGGNNLSGSIPPSIYNLSFLVIFSVSENQMHGSLPP 235 (627)
Q Consensus 156 ~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~ 235 (627)
.+.+..|..++++++|++|++++|.+++..+..+..+++|++|++++|.+.+.....+..+++|+.|++++|.+.+..+.
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 171 (606)
T 3t6q_A 92 PLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKE 171 (606)
T ss_dssp CCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHH
T ss_pred cccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChh
Confidence 99988899999999999999999999977678899999999999999999974445555699999999999999976666
Q ss_pred hhhhcCCCCc--eeccCCccccccCCccccCCCCCcEeeccccccc--------------------------ccCccCcC
Q 037951 236 SLGLYFPNLK--LFQTNENFFSGSIPISLSNASKLEYVEIASNSFF--------------------------GKLSVNFG 287 (627)
Q Consensus 236 ~~~~~~~~L~--~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~--------------------------~~~~~~l~ 287 (627)
.+.. +++++ .+++++|.+.+..+..+. ..+|+.+++++|... ...+..+.
T Consensus 172 ~~~~-l~~L~~l~L~l~~n~l~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~ 249 (606)
T 3t6q_A 172 DMSS-LQQATNLSLNLNGNDIAGIEPGAFD-SAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFE 249 (606)
T ss_dssp HHHT-TTTCCSEEEECTTCCCCEECTTTTT-TCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGG
T ss_pred hhhh-hcccceeEEecCCCccCccChhHhh-hccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhc
Confidence 6655 89999 899999999987777654 468999999887511 00111122
Q ss_pred CCC--CcCEEeccCccCCCCCCCCccccccCCCCCcccEEEccCcccccccchhHHhccccccEEEeecccccccCcccc
Q 037951 288 GMK--NLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLSSQLQILVLGTNQLYGSIPSGI 365 (627)
Q Consensus 288 ~l~--~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 365 (627)
++. +|+.+++++|.++.+.. ..+..+++|++|++++|.++ .+|..+..+. +|++|++++|.+.+..+..+
T Consensus 250 ~l~~~~L~~L~l~~n~l~~~~~------~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~-~L~~L~l~~n~l~~~~~~~~ 321 (606)
T 3t6q_A 250 GLCEMSVESINLQKHYFFNISS------NTFHCFSGLQELDLTATHLS-ELPSGLVGLS-TLKKLVLSANKFENLCQISA 321 (606)
T ss_dssp GGGGSEEEEEECTTCCCSSCCT------TTTTTCTTCSEEECTTSCCS-CCCSSCCSCT-TCCEEECTTCCCSBGGGGCG
T ss_pred hhhcCceeEEEeecCccCccCH------HHhccccCCCEEeccCCccC-CCChhhcccc-cCCEEECccCCcCcCchhhh
Confidence 222 78999999999987543 36788999999999999998 7788887776 89999999999998888899
Q ss_pred cCCCCCCEEeCCCCccccccc-hhhcCCCCCcEeeccCCcccccC--ChhhhCCCCCCEEEccCCccccccChhhcCCCC
Q 037951 366 GNLVNLYSLQTEENQFTGSIP-KEMGKLLNLQGLDFGGNHFSGEI--PSTLGNLSSLYEIFLGDNNLSGVIPSSLGNLER 442 (627)
Q Consensus 366 ~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~L~~n~~~~~~--~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~ 442 (627)
..+++|+.|++++|.+.+.++ ..+..+++|+.|++++|.+.+.. +..+..+++|++|++++|.+.+..+..+..+++
T Consensus 322 ~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 401 (606)
T 3t6q_A 322 SNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQ 401 (606)
T ss_dssp GGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTT
T ss_pred hccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCcc
Confidence 999999999999999886555 45889999999999999998665 778899999999999999999888999999999
Q ss_pred CCEEECcCCcCcccCCcc-ccccccCccEEEccCCccccCCCccccCCCCCCEEEccCCccccc---CCccccCCCCCCE
Q 037951 443 LAILEMFANELSGTIPGD-IFNISSLSVSLDLAENHFVGSIPPRIGNLKALRCFDVSNNDLSGE---IPSELGLCSSLEE 518 (627)
Q Consensus 443 L~~L~l~~n~l~~~~~~~-~~~~~~ll~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~---~~~~l~~l~~L~~ 518 (627)
|+.|++++|.+.+..+.. +..++.+ ++|++++|.+.+..+..+..+++|++|++++|++++. .+..+..+++|++
T Consensus 402 L~~L~l~~n~l~~~~~~~~~~~l~~L-~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~ 480 (606)
T 3t6q_A 402 LELLDLAFTRLKVKDAQSPFQNLHLL-KVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEI 480 (606)
T ss_dssp CSEEECTTCCEECCTTCCTTTTCTTC-CEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCE
T ss_pred CCeEECCCCcCCCcccchhhhCcccC-CEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccE
Confidence 999999999998776654 7788888 9999999999988899999999999999999999863 3356899999999
Q ss_pred EECCCCcccccCChhccCCCCCCEEECCCCcCccccchhcccCc-CCeeeCcCCcccccCCCC-CccCCCCccccccCCC
Q 037951 519 IYLAENFFNGFIPSFFRTSRGIRKVDLSRNNFFGQIPIFLEALS-LEYLNLSFNDFEGRLPTR-GIFANASAISVGGCNR 596 (627)
Q Consensus 519 L~L~~n~i~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~~~-L~~L~ls~n~l~~~~p~~-~~~~~l~~l~~~~n~~ 596 (627)
|++++|.+++..|..|..+++|+.|++++|++.+..|..+..+. | +|++++|++++..|.. ..+++++.+++.+||+
T Consensus 481 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 559 (606)
T 3t6q_A 481 LVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPL 559 (606)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCE
T ss_pred EECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCc
Confidence 99999999999999999999999999999999999999999888 9 9999999999877753 5678999999999999
Q ss_pred Cccc
Q 037951 597 LCGG 600 (627)
Q Consensus 597 l~~~ 600 (627)
.|.+
T Consensus 560 ~c~c 563 (606)
T 3t6q_A 560 DCTC 563 (606)
T ss_dssp ECSG
T ss_pred cccC
Confidence 8854
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-54 Score=470.90 Aligned_cols=531 Identities=19% Similarity=0.167 Sum_probs=330.6
Q ss_pred CCCc--ccceeecCCCCcceecccccCCCCCCCEEECCCCCCcccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCC
Q 037951 46 FCEW--EGITCDLRSKALSGLLSPQIGNLSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRL 123 (627)
Q Consensus 46 ~c~~--~~~~c~l~~~~l~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L 123 (627)
.|.+ .+...++++++++.. |..+. +++++|++++|.+++..+.+|.++++|++|++++|.+++..|..|+++++|
T Consensus 6 ~c~~~~~~~~~~c~~~~l~~i-p~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L 82 (606)
T 3vq2_A 6 PCIEVVPNITYQCMDQKLSKV-PDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHL 82 (606)
T ss_dssp CCEEEETTTEEECTTSCCSSC-CTTSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTC
T ss_pred CceecCCCCceEccCCCcccC-CCCCC--CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhc
Confidence 3544 355567788887754 44443 789999999999988778889999999999999999998888889999999
Q ss_pred CEEEccCccccccCCccccCCCCCCeeeCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCC-CCCCccCCCCCccEEEeeC
Q 037951 124 TVLVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTGGIPPFLGNLTSLEVVSLAGNPFGG-NIPDSLGQLKELKTLGIGG 202 (627)
Q Consensus 124 ~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~-~~~~~l~~l~~L~~L~l~~ 202 (627)
++|++++|.+++..|..|+++++|++|++++|.+.+..+..++++++|++|++++|.+.+ .+|..+.++++|++|++++
T Consensus 83 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~ 162 (606)
T 3vq2_A 83 SNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSY 162 (606)
T ss_dssp CEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCS
T ss_pred CEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccC
Confidence 999999999998778999999999999999999987777889999999999999999885 4688899999999999999
Q ss_pred ccccccCCccccCCCCCc----EEEeecccCccCCChhhhhcCCCCceeccCCcccc-ccCCccccCCCCCcEeeccccc
Q 037951 203 NNLSGSIPPSIYNLSFLV----IFSVSENQMHGSLPPSLGLYFPNLKLFQTNENFFS-GSIPISLSNASKLEYVEIASNS 277 (627)
Q Consensus 203 n~~~~~~~~~l~~l~~L~----~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~l~~~~~L~~L~l~~~~ 277 (627)
|.+++..+..++.+++|+ .+++++|.+.+..+..+ . ..+|++|++++|.+. +..+..+.+++.++.+++..+.
T Consensus 163 n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~-~-~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~ 240 (606)
T 3vq2_A 163 NYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAF-Q-GIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGE 240 (606)
T ss_dssp SCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTT-T-TCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEEC
T ss_pred CcceecChhhhhhhhccccccceeeccCCCcceeCcccc-c-CceeeeeeccCCccchhHHHHHhccccccccccccccc
Confidence 999887777777666554 79999999885444443 3 338999999999876 3566667778887777764333
Q ss_pred cccc------CccCcCCCC--CcCEEec-cCccCCCCCCCCccccccCCCCCcccEEEccCcccccccchhHHhcccccc
Q 037951 278 FFGK------LSVNFGGMK--NLSYLIL-EYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLSSQLQ 348 (627)
Q Consensus 278 ~~~~------~~~~l~~l~--~L~~L~l-~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~ 348 (627)
+... .+..+.++. .++.+++ ..+.+.+ ..+. +..+++|+.|++++|.+. .+| .+.... +|+
T Consensus 241 ~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~------~~~~-~~~l~~L~~L~l~~~~~~-~l~-~l~~~~-~L~ 310 (606)
T 3vq2_A 241 FKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSD------DIVK-FHCLANVSAMSLAGVSIK-YLE-DVPKHF-KWQ 310 (606)
T ss_dssp CTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCG------GGGS-CGGGTTCSEEEEESCCCC-CCC-CCCTTC-CCS
T ss_pred cccCCcccccChHHhhhhhhccHhheeccccccccc------cccc-cccCCCCCEEEecCccch-hhh-hccccc-cCC
Confidence 2211 001111111 2233333 2222222 1111 444555555555555554 233 333333 455
Q ss_pred EEEeecccccccCcccccCCCCCCEEeCCCCccccccchhhcCCCCCcEeeccCCccccc--CChhhhCCCCCCEEEccC
Q 037951 349 ILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGE--IPSTLGNLSSLYEIFLGD 426 (627)
Q Consensus 349 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~--~~~~~~~~~~L~~L~l~~ 426 (627)
+|++++|.+ +.+| .+ .+++|+.|++++|...+.. .+..+++|+.|++++|.+.+. .+..+..+++|++|++++
T Consensus 311 ~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~ 385 (606)
T 3vq2_A 311 SLSIIRCQL-KQFP-TL-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSF 385 (606)
T ss_dssp EEEEESCCC-SSCC-CC-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCS
T ss_pred EEEcccccC-cccc-cC-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCC
Confidence 555555555 3444 23 5555555555555333222 344555555555555555433 244555555555555555
Q ss_pred CccccccChhhcCCCCCCEEECcCCcCcccCC-ccccccccCccEEEccCCccccCCCccccCCCCCCEEEccCCcccc-
Q 037951 427 NNLSGVIPSSLGNLERLAILEMFANELSGTIP-GDIFNISSLSVSLDLAENHFVGSIPPRIGNLKALRCFDVSNNDLSG- 504 (627)
Q Consensus 427 n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~~~~~~~ll~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~- 504 (627)
|.+++ .|..+..+++|+.|++++|.+.+..| ..+..++++ ++|++++|.+.+..|..+.++++|++|++++|.+++
T Consensus 386 n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L-~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 463 (606)
T 3vq2_A 386 NGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKL-LYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDN 463 (606)
T ss_dssp CSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTC-CEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGG
T ss_pred Ccccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccC-CEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCc
Confidence 55542 33445555555555555555554444 344445555 555555555555555555555555555555555554
Q ss_pred cCCccccCCCCCCEEECCCCcccccCChhccCCCCCCEEECCCCcCccccchhcccCc-CCeeeCcCCcccccCCCC-Cc
Q 037951 505 EIPSELGLCSSLEEIYLAENFFNGFIPSFFRTSRGIRKVDLSRNNFFGQIPIFLEALS-LEYLNLSFNDFEGRLPTR-GI 582 (627)
Q Consensus 505 ~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~~~-L~~L~ls~n~l~~~~p~~-~~ 582 (627)
.+|..++.+++|++|++++|.+++..|..+..+++|++|++++|++.+..|..+..++ |++|++++|+++ .+|.. ..
T Consensus 464 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~ 542 (606)
T 3vq2_A 464 TLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQH 542 (606)
T ss_dssp EECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGG
T ss_pred chHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhh
Confidence 2455555555555555555555555555555555555555555555555555555544 555555555554 23321 22
Q ss_pred c-CCCCccccccCCCCcc
Q 037951 583 F-ANASAISVGGCNRLCG 599 (627)
Q Consensus 583 ~-~~l~~l~~~~n~~l~~ 599 (627)
+ .+++.+++.+||+.|+
T Consensus 543 l~~~L~~l~l~~N~~~c~ 560 (606)
T 3vq2_A 543 FPKSLAFFNLTNNSVACI 560 (606)
T ss_dssp SCTTCCEEECCSCCCCCS
T ss_pred hcccCcEEEccCCCcccC
Confidence 2 2355555555555553
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-53 Score=464.75 Aligned_cols=506 Identities=19% Similarity=0.149 Sum_probs=434.7
Q ss_pred CCCEEECCCCCCcccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEEccCccccccCCccccCCCCCCeeeCC
Q 037951 74 FLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALP 153 (627)
Q Consensus 74 ~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~ 153 (627)
.-++++.++++++ .+|..+. +++++|++++|.+++..+..|+++++|++|++++|.+++..|.+|.++++|++|+++
T Consensus 12 ~~~~~~c~~~~l~-~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls 88 (606)
T 3vq2_A 12 PNITYQCMDQKLS-KVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILT 88 (606)
T ss_dssp TTTEEECTTSCCS-SCCTTSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CCCceEccCCCcc-cCCCCCC--CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECC
Confidence 3468999999998 6777665 899999999999998888899999999999999999998889999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCccCCCCCccEEEeeCccccc-cCCccccCCCCCcEEEeecccCccC
Q 037951 154 MNNLTGGIPPFLGNLTSLEVVSLAGNPFGGNIPDSLGQLKELKTLGIGGNNLSG-SIPPSIYNLSFLVIFSVSENQMHGS 232 (627)
Q Consensus 154 ~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~-~~~~~l~~l~~L~~L~l~~n~l~~~ 232 (627)
+|.+++..|..|+++++|++|++++|.+.+..+..++++++|++|++++|.+.+ .+|..++++++|+.|++++|.+.+.
T Consensus 89 ~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~ 168 (606)
T 3vq2_A 89 GNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTI 168 (606)
T ss_dssp TCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEE
T ss_pred CCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceec
Confidence 999998889999999999999999999998777889999999999999999986 5799999999999999999999987
Q ss_pred CChhhhhcCCC----CceeccCCccccccCCccccCCCCCcEeeccccccc-ccCccCcCCCCCcCEEeccCccCCCCCC
Q 037951 233 LPPSLGLYFPN----LKLFQTNENFFSGSIPISLSNASKLEYVEIASNSFF-GKLSVNFGGMKNLSYLILEYNNLGSGES 307 (627)
Q Consensus 233 ~~~~~~~~~~~----L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~~~~~l~~l~~L~~L~l~~n~l~~~~~ 307 (627)
.+..+.. +.+ +.++++++|.+++..+..+... +|+.+++++|.+. +..+..++.++.++.+++..+.+.....
T Consensus 169 ~~~~~~~-l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~ 246 (606)
T 3vq2_A 169 TVNDLQF-LRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERN 246 (606)
T ss_dssp CTTTTHH-HHHCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCC
T ss_pred Chhhhhh-hhccccccceeeccCCCcceeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccccCCc
Confidence 7765544 444 4589999999987666665554 8999999999886 4556678889999999887665543221
Q ss_pred CC---ccccccCCCCCcccEEEc-cCcccccccchhHHhccccccEEEeecccccccCcccccCCCCCCEEeCCCCcccc
Q 037951 308 DE---MGFMNSLANCSKLQVLSL-GGNQFRGALPHSIANLSSQLQILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTG 383 (627)
Q Consensus 308 ~~---~~~~~~l~~~~~L~~L~l-~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~ 383 (627)
-. ...+..+..+ .++.+++ ..+.+.+..|. +..+. +|+.|++++|.+. .++ .+..+++|+.|++++|.+ +
T Consensus 247 l~~~~~~~~~~l~~l-~l~~l~l~~~~~~~~~~~~-~~~l~-~L~~L~l~~~~~~-~l~-~l~~~~~L~~L~l~~n~l-~ 320 (606)
T 3vq2_A 247 LEIFEPSIMEGLCDV-TIDEFRLTYTNDFSDDIVK-FHCLA-NVSAMSLAGVSIK-YLE-DVPKHFKWQSLSIIRCQL-K 320 (606)
T ss_dssp CSCCCGGGGTTGGGS-EEEEEEECCCTTCCGGGGS-CGGGT-TCSEEEEESCCCC-CCC-CCCTTCCCSEEEEESCCC-S
T ss_pred ccccChHHhhhhhhc-cHhheeccccccccccccc-cccCC-CCCEEEecCccch-hhh-hccccccCCEEEcccccC-c
Confidence 11 1122223333 5777788 66778877776 66665 8999999999997 455 788999999999999999 4
Q ss_pred ccchhhcCCCCCcEeeccCCcccccCChhhhCCCCCCEEEccCCccccc--cChhhcCCCCCCEEECcCCcCcccCCccc
Q 037951 384 SIPKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLGDNNLSGV--IPSSLGNLERLAILEMFANELSGTIPGDI 461 (627)
Q Consensus 384 ~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~~ 461 (627)
.+| .+ .+++|+.|++++|...+.. .+..+++|++|++++|.+++. .+..+..+++|+.|++++|.+. .+|..+
T Consensus 321 ~lp-~~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~ 395 (606)
T 3vq2_A 321 QFP-TL-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANF 395 (606)
T ss_dssp SCC-CC-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEE-EECCCC
T ss_pred ccc-cC-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccc-cchhhc
Confidence 777 45 8999999999999765444 567899999999999999866 3788999999999999999988 577888
Q ss_pred cccccCccEEEccCCccccCCC-ccccCCCCCCEEEccCCcccccCCccccCCCCCCEEECCCCcccc-cCChhccCCCC
Q 037951 462 FNISSLSVSLDLAENHFVGSIP-PRIGNLKALRCFDVSNNDLSGEIPSELGLCSSLEEIYLAENFFNG-FIPSFFRTSRG 539 (627)
Q Consensus 462 ~~~~~ll~~L~l~~n~l~~~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~-~~~~~l~~l~~ 539 (627)
..++++ ++|++++|.+.+..+ ..+..+++|++|++++|.+++..|..+..+++|++|++++|.+++ .+|..+..+++
T Consensus 396 ~~l~~L-~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~ 474 (606)
T 3vq2_A 396 MGLEEL-QHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTN 474 (606)
T ss_dssp TTCTTC-CEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTT
T ss_pred cCCCCC-CeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCC
Confidence 889999 999999999998877 678999999999999999998899999999999999999999998 47889999999
Q ss_pred CCEEECCCCcCccccchhcccCc-CCeeeCcCCcccccCCC-CCccCCCCccccccCCC
Q 037951 540 IRKVDLSRNNFFGQIPIFLEALS-LEYLNLSFNDFEGRLPT-RGIFANASAISVGGCNR 596 (627)
Q Consensus 540 L~~L~ls~n~l~~~~p~~~~~~~-L~~L~ls~n~l~~~~p~-~~~~~~l~~l~~~~n~~ 596 (627)
|++|++++|.+.+..|..+..++ |++|++++|++.+..|. ...+++|+.+++.+|..
T Consensus 475 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l 533 (606)
T 3vq2_A 475 LTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRI 533 (606)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCC
T ss_pred CCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcC
Confidence 99999999999998898888888 99999999999998774 45678999999999963
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-53 Score=476.86 Aligned_cols=529 Identities=22% Similarity=0.226 Sum_probs=448.7
Q ss_pred CCcccceeecCCCCcceecccccCCCCCCCEEECCCCCCcccCCcccCCCCCCCEEeCCCCcCcccC-CccccCCCCCCE
Q 037951 47 CEWEGITCDLRSKALSGLLSPQIGNLSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKI-PANLSYCSRLTV 125 (627)
Q Consensus 47 c~~~~~~c~l~~~~l~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~-~~~~~~l~~L~~ 125 (627)
|.-.|..+|+++++++.+. . ..+++++|||++|.+++..+.+|.++++|++|+|++|...+.+ |.+|+++++|++
T Consensus 2 C~~~~~~~dcs~~~L~~vP-~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~ 77 (844)
T 3j0a_A 2 CSFDGRIAFYRFCNLTQVP-Q---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRI 77 (844)
T ss_dssp CBTTTEEEEESCCCSSCCC-S---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCE
T ss_pred ceEeceEEEccCCCCCCCC-C---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCE
Confidence 6677778899999998764 3 4579999999999999888999999999999999999655444 788999999999
Q ss_pred EEccCccccccCCccccCCCCCCeeeCCCCCCCCCCCCC--CCCCCCCCEEECCCCCCCCCCC-CccCCCCCccEEEeeC
Q 037951 126 LVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTGGIPPF--LGNLTSLEVVSLAGNPFGGNIP-DSLGQLKELKTLGIGG 202 (627)
Q Consensus 126 L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~--l~~l~~L~~L~L~~n~~~~~~~-~~l~~l~~L~~L~l~~ 202 (627)
|++++|.+.+..|..|.++++|++|++++|.+.+..+.. +.++++|++|++++|.+.+..+ ..+.++++|++|++++
T Consensus 78 L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~ 157 (844)
T 3j0a_A 78 LDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSS 157 (844)
T ss_dssp EECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEES
T ss_pred EECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCC
Confidence 999999999888999999999999999999999866655 9999999999999999987654 5799999999999999
Q ss_pred ccccccCCccccCC--CCCcEEEeecccCccCCChhhhhcCC------CCceeccCCccccccCCccccCC---CCCcEe
Q 037951 203 NNLSGSIPPSIYNL--SFLVIFSVSENQMHGSLPPSLGLYFP------NLKLFQTNENFFSGSIPISLSNA---SKLEYV 271 (627)
Q Consensus 203 n~~~~~~~~~l~~l--~~L~~L~l~~n~l~~~~~~~~~~~~~------~L~~L~l~~~~~~~~~~~~l~~~---~~L~~L 271 (627)
|.+++..+..+..+ ++|+.|++++|.+.+..|..+.. ++ .|+.|++++|.+++..+..+... ++++.+
T Consensus 158 N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~-~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L 236 (844)
T 3j0a_A 158 NQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGK-CMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSL 236 (844)
T ss_dssp SCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCS-SSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEE
T ss_pred CcCCeeCHHHcccccCCccceEECCCCccccccccchhh-cCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccce
Confidence 99998888888877 89999999999999877766543 33 49999999999888777766543 567788
Q ss_pred eccccc---------ccccCccCcCCC--CCcCEEeccCccCCCCCCCCccccccCCCCCcccEEEccCcccccccchhH
Q 037951 272 EIASNS---------FFGKLSVNFGGM--KNLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSI 340 (627)
Q Consensus 272 ~l~~~~---------~~~~~~~~l~~l--~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~ 340 (627)
.++.+. +.+.....|.++ ++|+.|++++|.+.... +..+..+++|+.|++++|++.+..+..+
T Consensus 237 ~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~------~~~~~~l~~L~~L~L~~n~i~~~~~~~~ 310 (844)
T 3j0a_A 237 ILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLN------SRVFETLKDLKVLNLAYNKINKIADEAF 310 (844)
T ss_dssp ECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEEC------SCCSSSCCCCCEEEEESCCCCEECTTTT
T ss_pred ecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccC------hhhhhcCCCCCEEECCCCcCCCCChHHh
Confidence 776332 222333345544 78999999999988743 4568889999999999999998888888
Q ss_pred HhccccccEEEeecccccccCcccccCCCCCCEEeCCCCccccccchhhcCCCCCcEeeccCCcccccCChhhhCCCCCC
Q 037951 341 ANLSSQLQILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLY 420 (627)
Q Consensus 341 ~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~ 420 (627)
..+. +|++|++++|.+++..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+++. ..+++|+
T Consensus 311 ~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i-----~~~~~L~ 384 (844)
T 3j0a_A 311 YGLD-NLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI-----HFIPSIP 384 (844)
T ss_dssp TTCS-SCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC-----SSCCSCS
T ss_pred cCCC-CCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcc-----cCCCCcc
Confidence 8887 899999999999988899999999999999999999987788899999999999999999842 2378999
Q ss_pred EEEccCCccccccChhhcCCCCCCEEECcCCcCcccCC-ccccccccCccEEEccCCccccCCCc-cccCCCCCCEEEcc
Q 037951 421 EIFLGDNNLSGVIPSSLGNLERLAILEMFANELSGTIP-GDIFNISSLSVSLDLAENHFVGSIPP-RIGNLKALRCFDVS 498 (627)
Q Consensus 421 ~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~~~~~~~ll~~L~l~~n~l~~~~~~-~l~~l~~L~~L~Ls 498 (627)
.|++++|+++ .+|.. ..+++.|++++|.+.+.-. ..+..++.+ ++|++++|++.+..+. .+..+++|++|+++
T Consensus 385 ~L~l~~N~l~-~l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L-~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls 459 (844)
T 3j0a_A 385 DIFLSGNKLV-TLPKI---NLTANLIHLSENRLENLDILYFLLRVPHL-QILILNQNRFSSCSGDQTPSENPSLEQLFLG 459 (844)
T ss_dssp EEEEESCCCC-CCCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTC-CEEEEESCCCCCCCSSSSSCSCTTCCBCEEE
T ss_pred hhccCCCCcc-ccccc---ccccceeecccCccccCchhhhhhcCCcc-ceeeCCCCcccccccccccccCCccccccCC
Confidence 9999999998 44543 5679999999999984321 234577888 9999999999865443 35678999999999
Q ss_pred CCccc-----ccCCccccCCCCCCEEECCCCcccccCChhccCCCCCCEEECCCCcCccccchhcccCcCCeeeCcCCcc
Q 037951 499 NNDLS-----GEIPSELGLCSSLEEIYLAENFFNGFIPSFFRTSRGIRKVDLSRNNFFGQIPIFLEALSLEYLNLSFNDF 573 (627)
Q Consensus 499 ~n~l~-----~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~~~L~~L~ls~n~l 573 (627)
+|.++ +..+..|..+++|+.|+|++|.+++..|..|..+++|+.|++++|.+++..|..+. ..|+.|++++|++
T Consensus 460 ~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~-~~L~~L~Ls~N~l 538 (844)
T 3j0a_A 460 ENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP-ANLEILDISRNQL 538 (844)
T ss_dssp SCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC-SCCCEEEEEEECC
T ss_pred CCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh-ccccEEECCCCcC
Confidence 99986 34456788999999999999999999999999999999999999999976665555 4499999999999
Q ss_pred cccCCCCCccCCCCccccccCCCCccc
Q 037951 574 EGRLPTRGIFANASAISVGGCNRLCGG 600 (627)
Q Consensus 574 ~~~~p~~~~~~~l~~l~~~~n~~l~~~ 600 (627)
++..|.. +.+++.+++.+||+.|++
T Consensus 539 ~~~~~~~--~~~L~~l~l~~Np~~C~c 563 (844)
T 3j0a_A 539 LAPNPDV--FVSLSVLDITHNKFICEC 563 (844)
T ss_dssp CCCCSCC--CSSCCEEEEEEECCCCSS
T ss_pred CCCChhH--hCCcCEEEecCCCccccc
Confidence 9988854 678999999999999954
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.8e-53 Score=458.13 Aligned_cols=498 Identities=18% Similarity=0.233 Sum_probs=283.7
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCCCCC-------CCCCCCCCCCc---ccceeecCCCCcceecccccCCCCCCCEEECCC
Q 037951 13 AFEEGDLAALQAFKSMISHDPQGILN-------SWNDSRHFCEW---EGITCDLRSKALSGLLSPQIGNLSFLREINLMN 82 (627)
Q Consensus 13 ~~~~~~~~~l~~~~~~~~~~~~~~~~-------~w~~~~~~c~~---~~~~c~l~~~~l~~~~~~~l~~l~~L~~L~Ls~ 82 (627)
+....|++||.+++.++.+++|.... +|....++|.| .||+|+-. .+++.|+|++
T Consensus 26 ~~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~~~~c~w~~~~GV~C~~~---------------~~V~~L~L~~ 90 (636)
T 4eco_A 26 AEYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELDMWGAQPGVSLNSN---------------GRVTGLSLEG 90 (636)
T ss_dssp CHHHHHHHHHHHHHHHTTGGGCCCCC------CCCCCSSCGGGTTCCTTEEECTT---------------CCEEEEECTT
T ss_pred hhHHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCCCCcccccCCCCeEEcCC---------------CCEEEEEecC
Confidence 33456999999999999877775433 89988999999 99999532 3788999999
Q ss_pred CCCcccCCcccCCCCCCCEEeCCCCcCc------c------cCCccccCCCCCCEEEccCccccccCCccccC-CCCCCe
Q 037951 83 NTIQGEIPLEFGRLRRLETLLLSDNSLV------G------KIPANLSYCSRLTVLVLGNNKLVGSIPFEFVS-LYKLKQ 149 (627)
Q Consensus 83 ~~~~~~~~~~~~~l~~L~~L~L~~n~i~------~------~~~~~~~~l~~L~~L~ls~n~l~~~~~~~l~~-l~~L~~ 149 (627)
+.+.|.+|.+|+++++|++|+|++|.+. + .+|... +..|+ ++++++.+.+..+..+.. +..+..
T Consensus 91 ~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~~~~~~~~l~~ 167 (636)
T 4eco_A 91 FGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPREDFSDLIKDCIN 167 (636)
T ss_dssp SCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGGSCHHHHHHHH
T ss_pred cccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchhhHHHHHHHHhh
Confidence 9999999999999999999999999762 1 233322 44566 777777766665555442 111222
Q ss_pred eeCCCCCCCCCCCCCCCCCCCCCEEECC--CCCCCCCCCCccCCCCCccEEEeeCcccccc-----------------CC
Q 037951 150 LALPMNNLTGGIPPFLGNLTSLEVVSLA--GNPFGGNIPDSLGQLKELKTLGIGGNNLSGS-----------------IP 210 (627)
Q Consensus 150 L~l~~n~l~~~~~~~l~~l~~L~~L~L~--~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~-----------------~~ 210 (627)
+++....+.. .....++.+.+. .|.+++ +|..++++++|++|++++|.+++. +|
T Consensus 168 ~~l~~~~~~~------~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip 240 (636)
T 4eco_A 168 SDPQQKSIKK------SSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKT 240 (636)
T ss_dssp HCTTSCCCCC------CCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTT
T ss_pred cCcccccccc------ccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCc
Confidence 2222111110 001111111111 233333 344444444444444444444432 44
Q ss_pred cccc--CCCCCcEEEeecccCccCCChhhhhcCCCCceeccCCcc-ccc-cCCccccCC------CCCcEeecccccccc
Q 037951 211 PSIY--NLSFLVIFSVSENQMHGSLPPSLGLYFPNLKLFQTNENF-FSG-SIPISLSNA------SKLEYVEIASNSFFG 280 (627)
Q Consensus 211 ~~l~--~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~~~-~~~-~~~~~l~~~------~~L~~L~l~~~~~~~ 280 (627)
..++ ++++|+.|++++|.+.+.+|..+.. +++|++|++++|. +++ .+|..+..+ ++|++|++++|.+.
T Consensus 241 ~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~-l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~- 318 (636)
T 4eco_A 241 EDLKWDNLKDLTDVEVYNCPNLTKLPTFLKA-LPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK- 318 (636)
T ss_dssp SCCCGGGCTTCCEEEEECCTTCSSCCTTTTT-CSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-
T ss_pred hhhhhcccCCCCEEEecCCcCCccChHHHhc-CCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-
Confidence 4444 4444444444444444444433322 3333333333333 333 333333322 44555555555444
Q ss_pred cCcc--CcCCCCCcCEEeccCccCCCCCCCCccccccCCCCCcccEEEccCcccccccchhHHhccccccEEEeeccccc
Q 037951 281 KLSV--NFGGMKNLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLSSQLQILVLGTNQLY 358 (627)
Q Consensus 281 ~~~~--~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 358 (627)
.+|. .++.+++|++|++++|.++ +.+| .+..+. +|++|++++|.++
T Consensus 319 ~ip~~~~l~~l~~L~~L~L~~N~l~------------------------------g~ip-~~~~l~-~L~~L~L~~N~l~ 366 (636)
T 4eco_A 319 TFPVETSLQKMKKLGMLECLYNQLE------------------------------GKLP-AFGSEI-KLASLNLAYNQIT 366 (636)
T ss_dssp SCCCHHHHTTCTTCCEEECCSCCCE------------------------------EECC-CCEEEE-EESEEECCSSEEE
T ss_pred ccCchhhhccCCCCCEEeCcCCcCc------------------------------cchh-hhCCCC-CCCEEECCCCccc
Confidence 3333 3444444444444444443 3333 233322 3444444444444
Q ss_pred ccCcccccCCCC-CCEEeCCCCccccccchhhcCCC--CCcEeeccCCcccccCChhhh-------CCCCCCEEEccCCc
Q 037951 359 GSIPSGIGNLVN-LYSLQTEENQFTGSIPKEMGKLL--NLQGLDFGGNHFSGEIPSTLG-------NLSSLYEIFLGDNN 428 (627)
Q Consensus 359 ~~~~~~~~~l~~-L~~L~l~~n~~~~~~~~~~~~l~--~L~~L~L~~n~~~~~~~~~~~-------~~~~L~~L~l~~n~ 428 (627)
.+|..+..+++ |+.|++++|.++ .+|..+..++ +|+.|++++|.+.+..|..+. .+++|++|++++|.
T Consensus 367 -~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~ 444 (636)
T 4eco_A 367 -EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQ 444 (636)
T ss_dssp -ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSC
T ss_pred -cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCc
Confidence 33444444444 555555555544 3444443322 455555555555554444444 44555556666655
Q ss_pred cccccChhhcCCCCCCEEECcCCcCcccCCccccccc--------cCccEEEccCCccccCCCcccc--CCCCCCEEEcc
Q 037951 429 LSGVIPSSLGNLERLAILEMFANELSGTIPGDIFNIS--------SLSVSLDLAENHFVGSIPPRIG--NLKALRCFDVS 498 (627)
Q Consensus 429 ~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~--------~ll~~L~l~~n~l~~~~~~~l~--~l~~L~~L~Ls 498 (627)
++...+..+..+++|+.|++++|.+. .+|....... .+ ++|++++|++. .+|..+. .+++|++|+++
T Consensus 445 l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L-~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls 521 (636)
T 4eco_A 445 ISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLL-TSIDLRFNKLT-KLSDDFRATTLPYLVGIDLS 521 (636)
T ss_dssp CCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGC-CEEECCSSCCC-BCCGGGSTTTCTTCCEEECC
T ss_pred cCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCc-cEEECcCCcCC-ccChhhhhccCCCcCEEECC
Confidence 55332233444556666666666555 4554433322 55 67777777776 5666665 77888888888
Q ss_pred CCcccccCCccccCCCCCCEEEC------CCCcccccCChhccCCCCCCEEECCCCcCccccchhcccCcCCeeeCcCCc
Q 037951 499 NNDLSGEIPSELGLCSSLEEIYL------AENFFNGFIPSFFRTSRGIRKVDLSRNNFFGQIPIFLEALSLEYLNLSFND 572 (627)
Q Consensus 499 ~n~l~~~~~~~l~~l~~L~~L~L------~~n~i~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~~~L~~L~ls~n~ 572 (627)
+|++++ +|..+..+++|++|++ ++|.+.+.+|..+..+++|++|++++|.+ +.+|..+. ..|+.|++++|+
T Consensus 522 ~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~-~~L~~L~Ls~N~ 598 (636)
T 4eco_A 522 YNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT-PNISVLDIKDNP 598 (636)
T ss_dssp SSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC-TTCCEEECCSCT
T ss_pred CCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh-CcCCEEECcCCC
Confidence 888875 7777777888888888 56777888888888888888888888888 57776654 348888888888
Q ss_pred ccccC
Q 037951 573 FEGRL 577 (627)
Q Consensus 573 l~~~~ 577 (627)
+...-
T Consensus 599 l~~~~ 603 (636)
T 4eco_A 599 NISID 603 (636)
T ss_dssp TCEEE
T ss_pred Ccccc
Confidence 76533
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-50 Score=435.37 Aligned_cols=492 Identities=17% Similarity=0.195 Sum_probs=380.2
Q ss_pred CCCcccceeecCCCCcceecccccCCCCCCCEEECCCCCCcccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCE
Q 037951 46 FCEWEGITCDLRSKALSGLLSPQIGNLSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLTV 125 (627)
Q Consensus 46 ~c~~~~~~c~l~~~~l~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~ 125 (627)
.|.|.++ ||+++++++.+ |..+. ++|++|++++|.+++..|.+|.++++|++|++++|++++..|..|+++++|++
T Consensus 3 ~C~~~~~-c~~~~~~l~~i-p~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 78 (549)
T 2z81_A 3 SCDASGV-CDGRSRSFTSI-PSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEH 78 (549)
T ss_dssp EECTTSE-EECTTSCCSSC-CSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred cCCCCce-EECCCCccccc-cccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCE
Confidence 5999998 99999999865 44443 79999999999999888899999999999999999999888899999999999
Q ss_pred EEccCccccccCCccccCCCCCCeeeCCCCCCCC-CCCCCCCCCCCCCEEECCCCC-CCCCCCCccCCCCCccEEEeeCc
Q 037951 126 LVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTG-GIPPFLGNLTSLEVVSLAGNP-FGGNIPDSLGQLKELKTLGIGGN 203 (627)
Q Consensus 126 L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~L~~n~-~~~~~~~~l~~l~~L~~L~l~~n 203 (627)
|++++|++++..+..++++++|++|++++|.+++ ..|..++++++|++|++++|. +....+..+..+++|++|++++|
T Consensus 79 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n 158 (549)
T 2z81_A 79 LDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKAL 158 (549)
T ss_dssp EECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEET
T ss_pred EECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCC
Confidence 9999999998777789999999999999999986 457789999999999999998 44444468999999999999999
Q ss_pred cccccCCccccCCCCCcEEEeecccCccCCChhhhhcCCCCceeccCCccccccC--C-ccccCCCCCcEeecccccccc
Q 037951 204 NLSGSIPPSIYNLSFLVIFSVSENQMHGSLPPSLGLYFPNLKLFQTNENFFSGSI--P-ISLSNASKLEYVEIASNSFFG 280 (627)
Q Consensus 204 ~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~-~~l~~~~~L~~L~l~~~~~~~ 280 (627)
.+++..|..++.+++|+.|++++|.+. .+|..+...+++|++|++++|.+++.. + .....+++|+.+++++|.+.+
T Consensus 159 ~l~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 237 (549)
T 2z81_A 159 SLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTD 237 (549)
T ss_dssp TCCEECTTTTTTCSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEH
T ss_pred cccccChhhhhccccCceEecccCccc-ccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccch
Confidence 999999999999999999999999875 566666666899999999999988742 1 223457889999999998765
Q ss_pred cCc----cCcCCCCCcCEEeccCccCCCCCCCCccccccCCCCCcccEEEccCcccccc-----cchhHHhccccccEEE
Q 037951 281 KLS----VNFGGMKNLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGA-----LPHSIANLSSQLQILV 351 (627)
Q Consensus 281 ~~~----~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~-----~~~~~~~~~~~L~~L~ 351 (627)
..+ ..+..+++|+.+++++|.+.+...-.......+..+.+++.|++.++.+... .+..+. ...+++.|+
T Consensus 238 ~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~-~~~~L~~L~ 316 (549)
T 2z81_A 238 ESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYS-LLEKVKRIT 316 (549)
T ss_dssp HHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHH-HSTTCCEEE
T ss_pred hHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhh-hcccceEEE
Confidence 433 3346778999999999987664332212233456778889999988876532 122222 223788888
Q ss_pred eecccccccCcccc-cCCCCCCEEeCCCCccccccch---hhcCCCCCcEeeccCCcccccCC--hhhhCCCCCCEEEcc
Q 037951 352 LGTNQLYGSIPSGI-GNLVNLYSLQTEENQFTGSIPK---EMGKLLNLQGLDFGGNHFSGEIP--STLGNLSSLYEIFLG 425 (627)
Q Consensus 352 l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~~~~~~~~---~~~~l~~L~~L~L~~n~~~~~~~--~~~~~~~~L~~L~l~ 425 (627)
+++|.+. .+|..+ ..+++|+.|++++|++++..|. .++.+++|+.|++++|++++..+ ..+..+++|++|+++
T Consensus 317 l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls 395 (549)
T 2z81_A 317 VENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDIS 395 (549)
T ss_dssp EESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECT
T ss_pred eccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECC
Confidence 8888876 455554 5688888888888888765543 36677888888888888874432 347778888888888
Q ss_pred CCccccccChhhcCCCCCCEEECcCCcCcccCCccccccccCccEEEccCCccccCCCccccCCCCCCEEEccCCccccc
Q 037951 426 DNNLSGVIPSSLGNLERLAILEMFANELSGTIPGDIFNISSLSVSLDLAENHFVGSIPPRIGNLKALRCFDVSNNDLSGE 505 (627)
Q Consensus 426 ~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~ll~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ 505 (627)
+|+++ .+|..+..+++|++|++++|.+. .+|..+. ..+ ++|++++|++.+.. ..+++|++|++++|+++ .
T Consensus 396 ~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~-~l~~~~~--~~L-~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ 465 (549)
T 2z81_A 396 RNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTCIP--QTL-EVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-T 465 (549)
T ss_dssp TCCCC-CCCSCCCCCTTCCEEECTTSCCS-CCCTTSC--TTC-SEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-S
T ss_pred CCCCc-cCChhhcccccccEEECCCCCcc-cccchhc--CCc-eEEECCCCChhhhc----ccCChhcEEECCCCccC-c
Confidence 88887 56777777788888888888776 4443332 344 67777777776532 45677777777777776 5
Q ss_pred CCccccCCCCCCEEECCCCcccccCChhccCCCCCCEEECCCCcCccccc
Q 037951 506 IPSELGLCSSLEEIYLAENFFNGFIPSFFRTSRGIRKVDLSRNNFFGQIP 555 (627)
Q Consensus 506 ~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~ls~n~l~~~~p 555 (627)
+|. ...+++|++|++++|++++..|..+..+++|+.|++++|++.+..|
T Consensus 466 ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 466 LPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp CCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred CCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 554 4566777777777777777666667777777777777777766555
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-50 Score=451.56 Aligned_cols=504 Identities=20% Similarity=0.175 Sum_probs=429.3
Q ss_pred eecCCCCcceecccccCCCCCCCEEECCCCCCcccC-CcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEEccCcc
Q 037951 54 CDLRSKALSGLLSPQIGNLSFLREINLMNNTIQGEI-PLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLTVLVLGNNK 132 (627)
Q Consensus 54 c~l~~~~l~~~~~~~l~~l~~L~~L~Ls~~~~~~~~-~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ls~n~ 132 (627)
-|+++|.+++..+..|.++++|++|++++|...+.+ |.+|.++++|++|+|++|.+.+..|..|+++++|++|++++|.
T Consensus 29 LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~ 108 (844)
T 3j0a_A 29 LLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCG 108 (844)
T ss_dssp EEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCC
T ss_pred EECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCC
Confidence 389999999999999999999999999999655555 8889999999999999999998889999999999999999999
Q ss_pred ccccCCcc--ccCCCCCCeeeCCCCCCCCCCC-CCCCCCCCCCEEECCCCCCCCCCCCccCCC--CCccEEEeeCccccc
Q 037951 133 LVGSIPFE--FVSLYKLKQLALPMNNLTGGIP-PFLGNLTSLEVVSLAGNPFGGNIPDSLGQL--KELKTLGIGGNNLSG 207 (627)
Q Consensus 133 l~~~~~~~--l~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l--~~L~~L~l~~n~~~~ 207 (627)
+++..+.. +.++++|++|++++|.+.+..+ ..++++++|++|++++|.+.+..+..+..+ ++|+.|+++.|.+.+
T Consensus 109 l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~ 188 (844)
T 3j0a_A 109 LSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYS 188 (844)
T ss_dssp CSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCC
T ss_pred CCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCcccc
Confidence 98766655 9999999999999999987654 579999999999999999998888888887 899999999999998
Q ss_pred cCCccccCCCC------CcEEEeecccCccCCChhhhhcC--CCCceeccCCc---------cccccCCccccC--CCCC
Q 037951 208 SIPPSIYNLSF------LVIFSVSENQMHGSLPPSLGLYF--PNLKLFQTNEN---------FFSGSIPISLSN--ASKL 268 (627)
Q Consensus 208 ~~~~~l~~l~~------L~~L~l~~n~l~~~~~~~~~~~~--~~L~~L~l~~~---------~~~~~~~~~l~~--~~~L 268 (627)
..+..+..+++ |+.|++++|.+.+..+..+.... .++..+.+..+ .+.+.....+.. .++|
T Consensus 189 ~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L 268 (844)
T 3j0a_A 189 RVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSV 268 (844)
T ss_dssp CCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCC
T ss_pred ccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCc
Confidence 88887777665 99999999999988887776533 45667776632 222223333444 3789
Q ss_pred cEeecccccccccCccCcCCCCCcCEEeccCccCCCCCCCCccccccCCCCCcccEEEccCcccccccchhHHhcccccc
Q 037951 269 EYVEIASNSFFGKLSVNFGGMKNLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLSSQLQ 348 (627)
Q Consensus 269 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~ 348 (627)
+.|++++|.+.+..+..+..+++|+.|++++|.++... +..+..+++|++|++++|.+++..+..+..++ +|+
T Consensus 269 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~ 341 (844)
T 3j0a_A 269 RHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIA------DEAFYGLDNLQVLNLSYNLLGELYSSNFYGLP-KVA 341 (844)
T ss_dssp CEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEEC------TTTTTTCSSCCEEEEESCCCSCCCSCSCSSCT-TCC
T ss_pred cEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCC------hHHhcCCCCCCEEECCCCCCCccCHHHhcCCC-CCC
Confidence 99999999999988999999999999999999998743 34678899999999999999988888888887 899
Q ss_pred EEEeecccccccCcccccCCCCCCEEeCCCCccccccchhhcCCCCCcEeeccCCcccccCChhhhCCCCCCEEEccCCc
Q 037951 349 ILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLGDNN 428 (627)
Q Consensus 349 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~ 428 (627)
.|++++|.+.+..+..+..+++|+.|++++|.+++ +..+++|+.|++++|++. .+|.. ..+++.|++++|.
T Consensus 342 ~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~-----i~~~~~L~~L~l~~N~l~-~l~~~---~~~l~~L~ls~N~ 412 (844)
T 3j0a_A 342 YIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT-----IHFIPSIPDIFLSGNKLV-TLPKI---NLTANLIHLSENR 412 (844)
T ss_dssp EEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCC-----CSSCCSCSEEEEESCCCC-CCCCC---CTTCCEEECCSCC
T ss_pred EEECCCCCCCccChhhhcCCCCCCEEECCCCCCCc-----ccCCCCcchhccCCCCcc-ccccc---ccccceeecccCc
Confidence 99999999998888889999999999999999884 233889999999999998 44543 5689999999999
Q ss_pred cccccC-hhhcCCCCCCEEECcCCcCcccCCc-cccccccCccEEEccCCcccc-----CCCccccCCCCCCEEEccCCc
Q 037951 429 LSGVIP-SSLGNLERLAILEMFANELSGTIPG-DIFNISSLSVSLDLAENHFVG-----SIPPRIGNLKALRCFDVSNND 501 (627)
Q Consensus 429 ~~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~-~~~~~~~ll~~L~l~~n~l~~-----~~~~~l~~l~~L~~L~Ls~n~ 501 (627)
+++... ..+..+++|+.|++++|.+.+..+. .+..++++ ++|++++|.+.+ ..+..|..+++|++|+|++|+
T Consensus 413 l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L-~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~ 491 (844)
T 3j0a_A 413 LENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSL-EQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNY 491 (844)
T ss_dssp CCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTC-CBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHH
T ss_pred cccCchhhhhhcCCccceeeCCCCcccccccccccccCCcc-ccccCCCCccccccccccchhhhcCcccccEEECCCCc
Confidence 986432 2356899999999999999854333 24456677 899999999873 445668889999999999999
Q ss_pred ccccCCccccCCCCCCEEECCCCcccccCChhccCCCCCCEEECCCCcCccccchhcccCcCCeeeCcCCcccccCC
Q 037951 502 LSGEIPSELGLCSSLEEIYLAENFFNGFIPSFFRTSRGIRKVDLSRNNFFGQIPIFLEALSLEYLNLSFNDFEGRLP 578 (627)
Q Consensus 502 l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~~~L~~L~ls~n~l~~~~p 578 (627)
+++..|..|..+++|+.|+|++|++++..+..+. ++|+.|++++|.+.+..|..+. .|+.+++++|++....+
T Consensus 492 l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~~--~L~~l~l~~Np~~C~c~ 564 (844)
T 3j0a_A 492 LNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVFV--SLSVLDITHNKFICECE 564 (844)
T ss_dssp HTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCCS--SCCEEEEEEECCCCSSS
T ss_pred ccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHhC--CcCEEEecCCCcccccc
Confidence 9988888899999999999999999988777666 8999999999999998886653 48899999999987665
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-50 Score=444.61 Aligned_cols=504 Identities=18% Similarity=0.234 Sum_probs=371.2
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCCCCCCCCCCC-----CC--CCc------------ccceeecCCCCcceecccccCCC
Q 037951 12 AAFEEGDLAALQAFKSMISHDPQGILNSWNDSR-----HF--CEW------------EGITCDLRSKALSGLLSPQIGNL 72 (627)
Q Consensus 12 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~w~~~~-----~~--c~~------------~~~~c~l~~~~l~~~~~~~l~~l 72 (627)
++...+|++||.+||.++. +| +|+... ++ |.| .||.|+-.
T Consensus 264 ~~~~~~d~~ALl~~k~~l~-~~-----~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~~--------------- 322 (876)
T 4ecn_A 264 TAEYIKDYKALKAIWEALD-GK-----NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNN--------------- 322 (876)
T ss_dssp CCHHHHHHHHHHHHHHHTT-GG-----GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECTT---------------
T ss_pred cccchHHHHHHHHHHHHcC-CC-----CCCcCCCcccccCCccccccccccccccCcCceEecCC---------------
Confidence 4455679999999999995 44 675433 44 999 99999541
Q ss_pred CCCCEEECCCCCCcccCCcccCCCCCCCEEeC-CCCcCcccCCccccCC-CCCCEEE---------------ccCccccc
Q 037951 73 SFLREINLMNNTIQGEIPLEFGRLRRLETLLL-SDNSLVGKIPANLSYC-SRLTVLV---------------LGNNKLVG 135 (627)
Q Consensus 73 ~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L-~~n~i~~~~~~~~~~l-~~L~~L~---------------ls~n~l~~ 135 (627)
.+++.|+|+++.+.|.+|.+|+++++|++|+| ++|.+.+..|...... ..+.... .....+..
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~ 402 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence 36788999999999999999999999999999 8887776533221111 0000000 00000000
Q ss_pred c-----------CCccccCCCCCCeeeCCC--CCCCCCCCCCCCCCCCCCEEECCCCCCCC-----------------CC
Q 037951 136 S-----------IPFEFVSLYKLKQLALPM--NNLTGGIPPFLGNLTSLEVVSLAGNPFGG-----------------NI 185 (627)
Q Consensus 136 ~-----------~~~~l~~l~~L~~L~l~~--n~l~~~~~~~l~~l~~L~~L~L~~n~~~~-----------------~~ 185 (627)
. .+........++.+.+.. |.+++ +|..++++++|++|++++|.+++ .+
T Consensus 403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~i 481 (876)
T 4ecn_A 403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYE 481 (876)
T ss_dssp HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred HHHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccC
Confidence 0 011112223444444444 66665 77778888888888888888876 27
Q ss_pred CCccC--CCCCccEEEeeCccccccCCccccCCCCCcEEEeeccc-Ccc-CCChhhhh------cCCCCceeccCCcccc
Q 037951 186 PDSLG--QLKELKTLGIGGNNLSGSIPPSIYNLSFLVIFSVSENQ-MHG-SLPPSLGL------YFPNLKLFQTNENFFS 255 (627)
Q Consensus 186 ~~~l~--~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~-l~~-~~~~~~~~------~~~~L~~L~l~~~~~~ 255 (627)
|..++ ++++|++|++++|.+.+.+|..++++++|+.|++++|. +++ .+|..+.. .+++|+.|++++|.++
T Consensus 482 P~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~ 561 (876)
T 4ecn_A 482 NEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE 561 (876)
T ss_dssp TSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC
T ss_pred ChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC
Confidence 77776 88888888888888888888888888888888888887 777 67766553 2458999999999888
Q ss_pred ccCCc--cccCCCCCcEeecccccccccCccCcCCCCCcCEEeccCccCCCCCCCCccccccCCCCCc-ccEEEccCccc
Q 037951 256 GSIPI--SLSNASKLEYVEIASNSFFGKLSVNFGGMKNLSYLILEYNNLGSGESDEMGFMNSLANCSK-LQVLSLGGNQF 332 (627)
Q Consensus 256 ~~~~~--~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~-L~~L~l~~n~~ 332 (627)
.+|. .+..+++|+.|++++|.+. .+| .++.+++|+.|++++|.++. ++..+..+++ |+.|++++|.+
T Consensus 562 -~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~~-------lp~~l~~l~~~L~~L~Ls~N~L 631 (876)
T 4ecn_A 562 -EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIEE-------IPEDFCAFTDQVEGLGFSHNKL 631 (876)
T ss_dssp -BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCSC-------CCTTSCEECTTCCEEECCSSCC
T ss_pred -ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCcccc-------chHHHhhccccCCEEECcCCCC
Confidence 7887 8889999999999999987 566 78899999999999998874 3445777888 99999999998
Q ss_pred ccccchhHHhcc-ccccEEEeecccccccCcccc---c--CCCCCCEEeCCCCccccccchh-hcCCCCCcEeeccCCcc
Q 037951 333 RGALPHSIANLS-SQLQILVLGTNQLYGSIPSGI---G--NLVNLYSLQTEENQFTGSIPKE-MGKLLNLQGLDFGGNHF 405 (627)
Q Consensus 333 ~~~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~~---~--~l~~L~~L~l~~n~~~~~~~~~-~~~l~~L~~L~L~~n~~ 405 (627)
+ .+|..+.... ++|+.|++++|++.+.+|... . .+++|+.|++++|.++ .+|.. +..+++|+.|++++|++
T Consensus 632 ~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L 709 (876)
T 4ecn_A 632 K-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLM 709 (876)
T ss_dssp C-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCC
T ss_pred C-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcC
Confidence 8 7776665543 249999999999987665322 2 3458999999999999 45554 45889999999999999
Q ss_pred cccCChhhhC--------CCCCCEEEccCCccccccChhhc--CCCCCCEEECcCCcCcccCCccccccccCccEEEccC
Q 037951 406 SGEIPSTLGN--------LSSLYEIFLGDNNLSGVIPSSLG--NLERLAILEMFANELSGTIPGDIFNISSLSVSLDLAE 475 (627)
Q Consensus 406 ~~~~~~~~~~--------~~~L~~L~l~~n~~~~~~~~~l~--~l~~L~~L~l~~n~l~~~~~~~~~~~~~ll~~L~l~~ 475 (627)
. .+|..+.. +++|+.|++++|+++ .+|..+. .+++|+.|++++|.+.+ +|..+..++++ +.|++++
T Consensus 710 ~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L-~~L~Ls~ 785 (876)
T 4ecn_A 710 T-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQL-KAFGIRH 785 (876)
T ss_dssp S-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTC-CEEECCC
T ss_pred C-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCC-CEEECCC
Confidence 8 55554332 238999999999999 6788886 89999999999999985 78778887777 7888877
Q ss_pred CccccCCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEECCCCcccccCChhccCCCCCCEEECCCCcCccccc
Q 037951 476 NHFVGSIPPRIGNLKALRCFDVSNNDLSGEIPSELGLCSSLEEIYLAENFFNGFIPSFFRTSRGIRKVDLSRNNFFGQIP 555 (627)
Q Consensus 476 n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~ls~n~l~~~~p 555 (627)
|+ ++++|++.+.+|..+..+++|+.|+|++|.+ +.+|..+. ++|+.||+++|++...-+
T Consensus 786 N~------------------~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~ 844 (876)
T 4ecn_A 786 QR------------------DAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDV 844 (876)
T ss_dssp CB------------------CTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEEC
T ss_pred CC------------------CcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccCh
Confidence 65 5566777777888888888888888888888 56666654 588888888888876554
Q ss_pred hhcccCc-CCeeeCcCCccc
Q 037951 556 IFLEALS-LEYLNLSFNDFE 574 (627)
Q Consensus 556 ~~~~~~~-L~~L~ls~n~l~ 574 (627)
..+.... +..+.+.+|+..
T Consensus 845 ~~~~~~~~~~~~~L~~n~~~ 864 (876)
T 4ecn_A 845 TSVCPYIEAGMYVLLYDKTQ 864 (876)
T ss_dssp GGGHHHHHTTCCEEECCTTS
T ss_pred HHccccccchheeecCCCcc
Confidence 4444433 556666666543
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-48 Score=420.73 Aligned_cols=507 Identities=18% Similarity=0.178 Sum_probs=391.6
Q ss_pred eeecCCCCcceecccccCCCCCCCEEECCCCCCcccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEEccCcc
Q 037951 53 TCDLRSKALSGLLSPQIGNLSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLTVLVLGNNK 132 (627)
Q Consensus 53 ~c~l~~~~l~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ls~n~ 132 (627)
..++++.+++.+ |..+. +++++|++++|.+++..+.+|.++++|++|++++|.+++..+..|+++++|++|++++|+
T Consensus 11 ~~~c~~~~l~~i-p~~l~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~ 87 (570)
T 2z63_A 11 TYQCMELNFYKI-PDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87 (570)
T ss_dssp EEECCSSCCSSC-CSSSC--SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred EEEeCCCCcccc-CCCcc--ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCc
Confidence 345556566543 44343 579999999999998888899999999999999999998888889999999999999999
Q ss_pred ccccCCccccCCCCCCeeeCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCC-CCCCccCCCCCccEEEeeCccccccCCc
Q 037951 133 LVGSIPFEFVSLYKLKQLALPMNNLTGGIPPFLGNLTSLEVVSLAGNPFGG-NIPDSLGQLKELKTLGIGGNNLSGSIPP 211 (627)
Q Consensus 133 l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~-~~~~~l~~l~~L~~L~l~~n~~~~~~~~ 211 (627)
++...+..|.++++|++|++++|.+++..+..++++++|++|++++|.+.+ .+|..+.++++|++|++++|.+++..+.
T Consensus 88 l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~ 167 (570)
T 2z63_A 88 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 167 (570)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGG
T ss_pred CCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHH
Confidence 998888899999999999999999997666679999999999999999986 3688999999999999999999877778
Q ss_pred cccCCCCC----cEEEeecccCccCCChhhhhcCCCCceeccCCccccc-cCCccccCCCCCcEeeccccccc------c
Q 037951 212 SIYNLSFL----VIFSVSENQMHGSLPPSLGLYFPNLKLFQTNENFFSG-SIPISLSNASKLEYVEIASNSFF------G 280 (627)
Q Consensus 212 ~l~~l~~L----~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~------~ 280 (627)
.++.+++| +.+++++|.+.+..+..+. ..+|+.+++++|.... .++..+..++.++...+....+. .
T Consensus 168 ~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~--~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~ 245 (570)
T 2z63_A 168 DLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK--EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEK 245 (570)
T ss_dssp GGHHHHTCTTCCCEEECTTCCCCEECTTTTT--TCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEE
T ss_pred HccchhccchhhhhcccCCCCceecCHHHhc--cCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhh
Confidence 88888887 8899999999876665554 2378888888874332 34445566777766655433221 1
Q ss_pred cCccCcCCCCC--cCEEeccCc-cCCCCCCCCccccccCCCCCcccEEEccCcccccccchhHHhccccccEEEeecccc
Q 037951 281 KLSVNFGGMKN--LSYLILEYN-NLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLSSQLQILVLGTNQL 357 (627)
Q Consensus 281 ~~~~~l~~l~~--L~~L~l~~n-~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l 357 (627)
.....+.++++ ++.++++++ .+.+ ..+..+..+++|+.|++++|.+. .+|..+... +|++|++++|.+
T Consensus 246 ~~~~~~~~l~~l~l~~l~l~~~~~~~~------~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~--~L~~L~l~~n~~ 316 (570)
T 2z63_A 246 FDKSALEGLCNLTIEEFRLAYLDYYLD------DIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF--GWQHLELVNCKF 316 (570)
T ss_dssp CCTTTTGGGGGSEEEEEEEEETTEEES------CSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC--CCSEEEEESCBC
T ss_pred cchhhhccccccchhhhhhhcchhhhh------hchhhhcCcCcccEEEecCccch-hhhhhhccC--CccEEeeccCcc
Confidence 11122333322 445555554 3333 23446677788888888888887 566666555 688888888888
Q ss_pred cccCcccccCCCCCCEEeCCCCccccccchhhcCCCCCcEeeccCCcccccC--ChhhhCCCCCCEEEccCCccccccCh
Q 037951 358 YGSIPSGIGNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEI--PSTLGNLSSLYEIFLGDNNLSGVIPS 435 (627)
Q Consensus 358 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~--~~~~~~~~~L~~L~l~~n~~~~~~~~ 435 (627)
. .+|. ..+++|+.|++++|.+.+..+. ..+++|+.|++++|.+.+.. +..+..+++|++|++++|.+.+..+.
T Consensus 317 ~-~l~~--~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 391 (570)
T 2z63_A 317 G-QFPT--LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN 391 (570)
T ss_dssp S-SCCB--CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE
T ss_pred c-ccCc--ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc
Confidence 7 4444 4678888888888887755543 67788888888888887543 56777888888888888888755444
Q ss_pred hhcCCCCCCEEECcCCcCcccCC-ccccccccCccEEEccCCccccCCCccccCCCCCCEEEccCCccc-ccCCccccCC
Q 037951 436 SLGNLERLAILEMFANELSGTIP-GDIFNISSLSVSLDLAENHFVGSIPPRIGNLKALRCFDVSNNDLS-GEIPSELGLC 513 (627)
Q Consensus 436 ~l~~l~~L~~L~l~~n~l~~~~~-~~~~~~~~ll~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~-~~~~~~l~~l 513 (627)
+..+++|+.|++++|.+.+..+ ..+..++++ ++|++++|.+.+..+..+..+++|++|++++|.++ +.+|..+..+
T Consensus 392 -~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L-~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l 469 (570)
T 2z63_A 392 -FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL-IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTEL 469 (570)
T ss_dssp -EETCTTCCEEECTTSEEESCTTSCTTTTCTTC-CEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTC
T ss_pred -ccccCCCCEEEccCCccccccchhhhhcCCCC-CEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcc
Confidence 7888888888888888876555 356677777 88888888888877888888888888888888886 4678888888
Q ss_pred CCCCEEECCCCcccccCChhccCCCCCCEEECCCCcCccccchhcccCc-CCeeeCcCCcccccCCCC
Q 037951 514 SSLEEIYLAENFFNGFIPSFFRTSRGIRKVDLSRNNFFGQIPIFLEALS-LEYLNLSFNDFEGRLPTR 580 (627)
Q Consensus 514 ~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~~~-L~~L~ls~n~l~~~~p~~ 580 (627)
++|++|++++|.+++..|..+..+++|+.|++++|.+.+..|..+..++ |++|++++|++.+..|..
T Consensus 470 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~ 537 (570)
T 2z63_A 470 RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 537 (570)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTT
T ss_pred cCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcch
Confidence 8888888888888888788888888888888888888877777777777 888888888888877753
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-48 Score=420.79 Aligned_cols=486 Identities=21% Similarity=0.187 Sum_probs=411.0
Q ss_pred eecCCCCcceecccccCCCCCCCEEECCCCCCcccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEEccCccc
Q 037951 54 CDLRSKALSGLLSPQIGNLSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLTVLVLGNNKL 133 (627)
Q Consensus 54 c~l~~~~l~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ls~n~l 133 (627)
-|++++.+++..+..|..+++|++|++++|.+++..+.+|.++++|++|++++|.+++..|..|+++++|++|++++|++
T Consensus 33 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 112 (570)
T 2z63_A 33 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNL 112 (570)
T ss_dssp EECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred EEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccccccccc
Confidence 48999999999889999999999999999999988888999999999999999999988888999999999999999999
Q ss_pred cccCCccccCCCCCCeeeCCCCCCCC-CCCCCCCCCCCCCEEECCCCCCCCCCCCccCCCCCc----cEEEeeCcccccc
Q 037951 134 VGSIPFEFVSLYKLKQLALPMNNLTG-GIPPFLGNLTSLEVVSLAGNPFGGNIPDSLGQLKEL----KTLGIGGNNLSGS 208 (627)
Q Consensus 134 ~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L----~~L~l~~n~~~~~ 208 (627)
+...+..++++++|++|++++|.+.+ .+|..++++++|++|++++|.+.+..+..+..+++| +.+++++|.+.+.
T Consensus 113 ~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~ 192 (570)
T 2z63_A 113 ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFI 192 (570)
T ss_dssp CCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEE
T ss_pred ccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceec
Confidence 96666679999999999999999987 468999999999999999999998778888888888 8999999999987
Q ss_pred CCccccCCCCCcEEEeecccCccCCChhhhhcCCCCceeccCCcccc------ccCCccccCCC--CCcEeecccc-ccc
Q 037951 209 IPPSIYNLSFLVIFSVSENQMHGSLPPSLGLYFPNLKLFQTNENFFS------GSIPISLSNAS--KLEYVEIASN-SFF 279 (627)
Q Consensus 209 ~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~~~~~------~~~~~~l~~~~--~L~~L~l~~~-~~~ 279 (627)
.+..+... +|+.+++++|.............+++++...+....+. ......+..+. .++.+++.++ .+.
T Consensus 193 ~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~ 271 (570)
T 2z63_A 193 QPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYL 271 (570)
T ss_dssp CTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEE
T ss_pred CHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhh
Confidence 77777666 89999999985543222222333566655444322211 11112222222 3567777777 667
Q ss_pred ccCccCcCCCCCcCEEeccCccCCCCCCCCccccccCCCCCcccEEEccCcccccccchhHHhccccccEEEeecccccc
Q 037951 280 GKLSVNFGGMKNLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLSSQLQILVLGTNQLYG 359 (627)
Q Consensus 280 ~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 359 (627)
+..+..+..+++|+.|++++|.++.+ +..+..+ +|++|++++|.+. .+|. ... ++|+.|++++|.+.+
T Consensus 272 ~~~~~~~~~l~~L~~L~l~~~~l~~l-------~~~~~~~-~L~~L~l~~n~~~-~l~~--~~l-~~L~~L~l~~n~~~~ 339 (570)
T 2z63_A 272 DDIIDLFNCLTNVSSFSLVSVTIERV-------KDFSYNF-GWQHLELVNCKFG-QFPT--LKL-KSLKRLTFTSNKGGN 339 (570)
T ss_dssp SCSTTTTGGGTTCSEEEEESCEECSC-------CBCCSCC-CCSEEEEESCBCS-SCCB--CBC-SSCCEEEEESCBSCC
T ss_pred hhchhhhcCcCcccEEEecCccchhh-------hhhhccC-CccEEeeccCccc-ccCc--ccc-cccCEEeCcCCcccc
Confidence 77788889999999999999988763 3456666 9999999999998 5554 233 489999999999876
Q ss_pred cCcccccCCCCCCEEeCCCCcccccc--chhhcCCCCCcEeeccCCcccccCChhhhCCCCCCEEEccCCccccccC-hh
Q 037951 360 SIPSGIGNLVNLYSLQTEENQFTGSI--PKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLGDNNLSGVIP-SS 436 (627)
Q Consensus 360 ~~~~~~~~l~~L~~L~l~~n~~~~~~--~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~ 436 (627)
..+. ..+++|+.|++++|.+++.. +..+..+++|+.|++++|.+.+..+. +..+++|++|++++|.+.+..+ ..
T Consensus 340 ~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~ 416 (570)
T 2z63_A 340 AFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSV 416 (570)
T ss_dssp BCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCT
T ss_pred cccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhh
Confidence 6554 78899999999999988654 67888999999999999999865444 8899999999999999987655 56
Q ss_pred hcCCCCCCEEECcCCcCcccCCccccccccCccEEEccCCccc-cCCCccccCCCCCCEEEccCCcccccCCccccCCCC
Q 037951 437 LGNLERLAILEMFANELSGTIPGDIFNISSLSVSLDLAENHFV-GSIPPRIGNLKALRCFDVSNNDLSGEIPSELGLCSS 515 (627)
Q Consensus 437 l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~ll~~L~l~~n~l~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~ 515 (627)
+..+++|++|++++|.+.+..|..+..++.+ ++|++++|.+. +.+|..+..+++|++|++++|++++..|..+..+++
T Consensus 417 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 495 (570)
T 2z63_A 417 FLSLRNLIYLDISHTHTRVAFNGIFNGLSSL-EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSS 495 (570)
T ss_dssp TTTCTTCCEEECTTSCCEECCTTTTTTCTTC-CEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred hhcCCCCCEEeCcCCcccccchhhhhcCCcC-cEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccC
Confidence 8899999999999999998888888999999 99999999997 578889999999999999999999888999999999
Q ss_pred CCEEECCCCcccccCChhccCCCCCCEEECCCCcCccccch
Q 037951 516 LEEIYLAENFFNGFIPSFFRTSRGIRKVDLSRNNFFGQIPI 556 (627)
Q Consensus 516 L~~L~L~~n~i~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~ 556 (627)
|++|++++|++++..+..+..+++|+.|++++|++.+..|.
T Consensus 496 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 496 LQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536 (570)
T ss_dssp CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred CCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence 99999999999998888899999999999999999987763
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-47 Score=410.63 Aligned_cols=485 Identities=19% Similarity=0.218 Sum_probs=298.9
Q ss_pred CCEEECCCCCCcccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEEccCccccccCCccccCCCCCCeeeCCC
Q 037951 75 LREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPM 154 (627)
Q Consensus 75 L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~ 154 (627)
..+.|.++++++ .+|..+. ++|++|++++|++++..|..|.++++|++|++++|++++..|.+|.++++|++|++++
T Consensus 7 ~~~c~~~~~~l~-~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~ 83 (549)
T 2z81_A 7 SGVCDGRSRSFT-SIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSD 83 (549)
T ss_dssp TSEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTT
T ss_pred CceEECCCCccc-cccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCC
Confidence 344688888887 6676654 7999999999999988888999999999999999999988888999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCEEECCCCCCCCC-CCCccCCCCCccEEEeeCccccccCC-ccccCCCCCcEEEeecccCccC
Q 037951 155 NNLTGGIPPFLGNLTSLEVVSLAGNPFGGN-IPDSLGQLKELKTLGIGGNNLSGSIP-PSIYNLSFLVIFSVSENQMHGS 232 (627)
Q Consensus 155 n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~-~~~~l~~l~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~l~~n~l~~~ 232 (627)
|.+++..+..++++++|++|++++|.+.+. .+..+.++++|++|++++|.+.+.++ ..+..+++|+.|++++|.+.+.
T Consensus 84 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 163 (549)
T 2z81_A 84 NHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNY 163 (549)
T ss_dssp SCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEE
T ss_pred CccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCccccc
Confidence 999987777799999999999999999863 46788999999999999998444444 6788899999999999988877
Q ss_pred CChhhhhcCCCCceeccCCccccccCCccccCCCCCcEeecccccccccC---ccCcCCCCCcCEEeccCccCCCCCCCC
Q 037951 233 LPPSLGLYFPNLKLFQTNENFFSGSIPISLSNASKLEYVEIASNSFFGKL---SVNFGGMKNLSYLILEYNNLGSGESDE 309 (627)
Q Consensus 233 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~---~~~l~~l~~L~~L~l~~n~l~~~~~~~ 309 (627)
.|..+.. +++|++|+++.+.+.......+..+++|++|++++|.+.+.. ......+++|+.|++++|.+++....
T Consensus 164 ~~~~l~~-l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~- 241 (549)
T 2z81_A 164 QSQSLKS-IRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFN- 241 (549)
T ss_dssp CTTTTTT-CSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHH-
T ss_pred Chhhhhc-cccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHH-
Confidence 7766654 667777777776654322222334666777777766665532 11123455666666666655431111
Q ss_pred ccccccCCCCCcccEEEccCcccccccc------hhHHhccccccEEEeeccccccc-----CcccccCCCCCCEEeCCC
Q 037951 310 MGFMNSLANCSKLQVLSLGGNQFRGALP------HSIANLSSQLQILVLGTNQLYGS-----IPSGIGNLVNLYSLQTEE 378 (627)
Q Consensus 310 ~~~~~~l~~~~~L~~L~l~~n~~~~~~~------~~~~~~~~~L~~L~l~~n~l~~~-----~~~~~~~l~~L~~L~l~~ 378 (627)
.+...+..+++|+.+++++|.+.+... ..+... ++++.|++.++.+... ++..+...++|+.|++++
T Consensus 242 -~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l-~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~ 319 (549)
T 2z81_A 242 -ELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSEL-GKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVEN 319 (549)
T ss_dssp -HHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCC-TTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEES
T ss_pred -HHHHHhhhhccccccccccccccccccccccchhhhhhh-cccccccccccccchhhhcccchhhhhhcccceEEEecc
Confidence 122233445566666666665543210 011112 2455555555544321 111112234555566655
Q ss_pred Cccccccchhh-cCCCCCcEeeccCCcccccCCh---hhhCCCCCCEEEccCCccccccC--hhhcCCCCCCEEECcCCc
Q 037951 379 NQFTGSIPKEM-GKLLNLQGLDFGGNHFSGEIPS---TLGNLSSLYEIFLGDNNLSGVIP--SSLGNLERLAILEMFANE 452 (627)
Q Consensus 379 n~~~~~~~~~~-~~l~~L~~L~L~~n~~~~~~~~---~~~~~~~L~~L~l~~n~~~~~~~--~~l~~l~~L~~L~l~~n~ 452 (627)
|.+. .+|..+ ..+++|+.|++++|.+.+..+. .++.+++|++|++++|.+++..+ ..+..+++|++|++++|+
T Consensus 320 n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~ 398 (549)
T 2z81_A 320 SKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNT 398 (549)
T ss_dssp SCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCC
T ss_pred Cccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCC
Confidence 5554 344333 3455566666666655544322 24455556666666665553321 235555556666666655
Q ss_pred CcccCCccccccccCccEEEccCCccccCCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEECCCCcccccCCh
Q 037951 453 LSGTIPGDIFNISSLSVSLDLAENHFVGSIPPRIGNLKALRCFDVSNNDLSGEIPSELGLCSSLEEIYLAENFFNGFIPS 532 (627)
Q Consensus 453 l~~~~~~~~~~~~~ll~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~ 532 (627)
+. .+|..+..++++ ++|++++|++.+ ++..+ .++|++|++++|++++.. ..+++|++|++++|+++ .+|.
T Consensus 399 l~-~lp~~~~~~~~L-~~L~Ls~N~l~~-l~~~~--~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~ 468 (549)
T 2z81_A 399 FH-PMPDSCQWPEKM-RFLNLSSTGIRV-VKTCI--PQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD 468 (549)
T ss_dssp CC-CCCSCCCCCTTC-CEEECTTSCCSC-CCTTS--CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC
T ss_pred Cc-cCChhhcccccc-cEEECCCCCccc-ccchh--cCCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC
Confidence 55 455555555555 555555555542 22222 145555555555555321 34555555555555555 3333
Q ss_pred hccCCCCCCEEECCCCcCccccchhcccCc-CCeeeCcCCcccccCC
Q 037951 533 FFRTSRGIRKVDLSRNNFFGQIPIFLEALS-LEYLNLSFNDFEGRLP 578 (627)
Q Consensus 533 ~l~~l~~L~~L~ls~n~l~~~~p~~~~~~~-L~~L~ls~n~l~~~~p 578 (627)
...+++|+.|++++|++.+..|..+..++ |+.|++++|++.+..|
T Consensus 469 -~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 469 -ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp -GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred -cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 23455555555555555555555455554 5555555555555444
|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-45 Score=401.27 Aligned_cols=532 Identities=18% Similarity=0.164 Sum_probs=395.9
Q ss_pred cceeecCCCCcceecccccCCCCCCCEEECCCCCCcccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEEccC
Q 037951 51 GITCDLRSKALSGLLSPQIGNLSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLTVLVLGN 130 (627)
Q Consensus 51 ~~~c~l~~~~l~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ls~ 130 (627)
+.+.++++.+++.+ |..+. +++++|||++|.|++..+.+|.++++|++|+|++|+|++..+.+|+++++|++|+|++
T Consensus 33 ~~~~~c~~~~l~~v-P~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~ 109 (635)
T 4g8a_A 33 NITYQCMELNFYKI-PDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG 109 (635)
T ss_dssp TTEEECTTSCCSSC-CSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTT
T ss_pred CCEEECCCCCcCcc-CCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccC
Confidence 44556777777754 55443 4899999999999987788999999999999999999988888899999999999999
Q ss_pred ccccccCCccccCCCCCCeeeCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCC-CCCccCCCCCccEEEeeCccccccC
Q 037951 131 NKLVGSIPFEFVSLYKLKQLALPMNNLTGGIPPFLGNLTSLEVVSLAGNPFGGN-IPDSLGQLKELKTLGIGGNNLSGSI 209 (627)
Q Consensus 131 n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~-~~~~l~~l~~L~~L~l~~n~~~~~~ 209 (627)
|++++..+..|.++++|++|++++|.+++..+..|+++++|++|++++|.+.+. .|..+..+++|++|++++|.+++..
T Consensus 110 N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 189 (635)
T 4g8a_A 110 NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 189 (635)
T ss_dssp CCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEEC
T ss_pred CcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccc
Confidence 999977778899999999999999999977777899999999999999999753 5778899999999999999999877
Q ss_pred CccccCCCC----CcEEEeecccCccCCChhhhhcCCCCceeccCCccccc-cCCccccCCCCCcEeecccccc------
Q 037951 210 PPSIYNLSF----LVIFSVSENQMHGSLPPSLGLYFPNLKLFQTNENFFSG-SIPISLSNASKLEYVEIASNSF------ 278 (627)
Q Consensus 210 ~~~l~~l~~----L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~------ 278 (627)
+..+..+.+ ...++++.|.+....+... . ...++.+++.++.... ..+..+..+..++...+..+..
T Consensus 190 ~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~-~-~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l 267 (635)
T 4g8a_A 190 CTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF-K-EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNL 267 (635)
T ss_dssp GGGGHHHHTCTTCCCEEECTTCCCCEECTTTT-T-TCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCC
T ss_pred cccccchhhhhhhhhhhhcccCcccccCcccc-c-chhhhhhhhhcccccccccchhhcCCccccccccccccccccccc
Confidence 777765544 3467888888875444332 2 3455667777665442 2233455666666655543322
Q ss_pred cccCccCcCCCCCcCEEeccCccCCCCCCCCccccccCCCCCcccEEEccCcccccccchhHHhccccccEEEeeccccc
Q 037951 279 FGKLSVNFGGMKNLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLSSQLQILVLGTNQLY 358 (627)
Q Consensus 279 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 358 (627)
.......+.....+....+..+....... .....+....+++.+.+.++.+....+ +.... .++.|++.+|.+.
T Consensus 268 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~---~~~~~~~~~~~l~~l~~~~~~~~~~~~--~~~~~-~L~~L~l~~~~~~ 341 (635)
T 4g8a_A 268 EKFDKSALEGLCNLTIEEFRLAYLDYYLD---GIIDLFNCLTNVSSFSLVSVTIERVKD--FSYNF-GWQHLELVNCKFG 341 (635)
T ss_dssp SCCCTTTTGGGGGSEEEEEEEECCCSCEE---ECTTTTGGGTTCSEEEEESCEEEECGG--GGSCC-CCSEEEEESCEES
T ss_pred ccccccccccccchhhhhhhhhhhccccc---chhhhhhhhcccccccccccccccccc--cccch-hhhhhhccccccc
Confidence 11222234444555555554443322111 223345566778888888887764332 22233 7888888888876
Q ss_pred ccCcccccCCCCCCEEeCCCCccccccchhhcCCCCCcEeeccCCccc--ccCChhhhCCCCCCEEEccCCccccccChh
Q 037951 359 GSIPSGIGNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFS--GEIPSTLGNLSSLYEIFLGDNNLSGVIPSS 436 (627)
Q Consensus 359 ~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~--~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~ 436 (627)
...+ ..++.|+.+++..|...... ....+++|+.+++++|.+. +..+..+..+.+|+.+++..+.... .+..
T Consensus 342 ~~~~---~~l~~L~~l~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~ 415 (635)
T 4g8a_A 342 QFPT---LKLKSLKRLTFTSNKGGNAF--SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSN 415 (635)
T ss_dssp SCCC---CBCTTCCEEEEESCCSCCBC--CCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSC
T ss_pred CcCc---ccchhhhhcccccccCCCCc--ccccccccccchhhccccccccccccchhhhhhhhhhhcccccccc-cccc
Confidence 4433 34567888888888765332 3456788888888888875 3355566778888888888888764 4456
Q ss_pred hcCCCCCCEEECcCCcCcccCCc-cccccccCccEEEccCCccccCCCccccCCCCCCEEEccCCccc-ccCCccccCCC
Q 037951 437 LGNLERLAILEMFANELSGTIPG-DIFNISSLSVSLDLAENHFVGSIPPRIGNLKALRCFDVSNNDLS-GEIPSELGLCS 514 (627)
Q Consensus 437 l~~l~~L~~L~l~~n~l~~~~~~-~~~~~~~ll~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~-~~~~~~l~~l~ 514 (627)
+..+++|+.+++..+......+. .+..+..+ +.++++.|.+.+..+..+..+++++.|++++|.+. +..|..+..++
T Consensus 416 ~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l-~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~ 494 (635)
T 4g8a_A 416 FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL-IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR 494 (635)
T ss_dssp CTTCTTCCEEECTTSEEESTTSSCTTTTCTTC-CEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCT
T ss_pred ccccccccchhhhhcccccccccccccccccc-ccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhcc
Confidence 77788888888888877655443 34556666 78888888888888888888888899999888743 45677888888
Q ss_pred CCCEEECCCCcccccCChhccCCCCCCEEECCCCcCccccchhcccCc-CCeeeCcCCcccccCCCC--CccCCCCcccc
Q 037951 515 SLEEIYLAENFFNGFIPSFFRTSRGIRKVDLSRNNFFGQIPIFLEALS-LEYLNLSFNDFEGRLPTR--GIFANASAISV 591 (627)
Q Consensus 515 ~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~~~-L~~L~ls~n~l~~~~p~~--~~~~~l~~l~~ 591 (627)
+|++|+|++|++++..|..|.++++|++|++++|++.+..|..+..++ |++||+++|++++..|.. ..+++|+.+++
T Consensus 495 ~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L 574 (635)
T 4g8a_A 495 NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNL 574 (635)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEEC
T ss_pred ccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEe
Confidence 899999999988888888888888999999999988877777777777 889999999888877753 23468888999
Q ss_pred ccCCCCccc
Q 037951 592 GGCNRLCGG 600 (627)
Q Consensus 592 ~~n~~l~~~ 600 (627)
.+||+.|++
T Consensus 575 ~~Np~~C~C 583 (635)
T 4g8a_A 575 TQNDFACTC 583 (635)
T ss_dssp TTCCBCCSG
T ss_pred eCCCCcccC
Confidence 999988864
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-46 Score=399.54 Aligned_cols=462 Identities=19% Similarity=0.207 Sum_probs=261.9
Q ss_pred CEEECCCCCCcccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEEccCccccccCCccccCCCCCCeeeCCCC
Q 037951 76 REINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPMN 155 (627)
Q Consensus 76 ~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n 155 (627)
++||+++|+++ .+|..+. ++|++|++++|.+++..|..|.++++|++|++++|++++..|..|.++++|++|++++|
T Consensus 3 ~~l~ls~n~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 79 (520)
T 2z7x_B 3 FLVDRSKNGLI-HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN 79 (520)
T ss_dssp CEEECTTSCCS-SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred ceEecCCCCcc-ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence 45666666666 4555444 66677777777666555566666677777777777666655666666677777777777
Q ss_pred CCCCCCCCCCCCCCCCCEEECCCCCCCC-CCCCccCCCCCccEEEeeCccccccCCccccCCCCC--cEEEeecccC--c
Q 037951 156 NLTGGIPPFLGNLTSLEVVSLAGNPFGG-NIPDSLGQLKELKTLGIGGNNLSGSIPPSIYNLSFL--VIFSVSENQM--H 230 (627)
Q Consensus 156 ~l~~~~~~~l~~l~~L~~L~L~~n~~~~-~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L--~~L~l~~n~l--~ 230 (627)
.++ .+|.. .+++|++|++++|.+++ ..|..++++++|++|++++|.+.+ ..+..+++| +.|++++|.+ .
T Consensus 80 ~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~ 153 (520)
T 2z7x_B 80 KLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGE 153 (520)
T ss_dssp CCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTS
T ss_pred cee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeeccccccc
Confidence 666 34444 56667777777776665 345666666777777777666654 334455555 6666666666 4
Q ss_pred cCCChhhhhcCCCCceeccCCccccccCCccccCCCCCcEeecccccccccCccCcCCCCCcCEEeccCccCCCCCCCCc
Q 037951 231 GSLPPSLGLYFPNLKLFQTNENFFSGSIPISLSNASKLEYVEIASNSFFGKLSVNFGGMKNLSYLILEYNNLGSGESDEM 310 (627)
Q Consensus 231 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~ 310 (627)
+..|..+...-.+...+++++|.+.+.++ ...+..+++|+.+++++|..........
T Consensus 154 ~~~~~~l~~l~~~~l~l~l~~n~~~~~~~-----------------------~~~~~~l~~L~~L~l~~n~~~~~~~~~~ 210 (520)
T 2z7x_B 154 KEDPEGLQDFNTESLHIVFPTNKEFHFIL-----------------------DVSVKTVANLELSNIKCVLEDNKCSYFL 210 (520)
T ss_dssp SCCTTTTTTCCEEEEEEECCSSSCCCCCC-----------------------CCCCTTCSEEEECCEEECCSTTTTHHHH
T ss_pred ccccccccccccceEEEEeccCcchhhhh-----------------------hhhhhcccceeeccccccccccccceee
Confidence 44443322200011122333333222111 1123334444444444432000000000
Q ss_pred cccccCCCCCcccEEEccCcccccccchhHHhc--cccccEEEeecccccccCcccc-----cCCCCCCEEeCCCCcccc
Q 037951 311 GFMNSLANCSKLQVLSLGGNQFRGALPHSIANL--SSQLQILVLGTNQLYGSIPSGI-----GNLVNLYSLQTEENQFTG 383 (627)
Q Consensus 311 ~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~--~~~L~~L~l~~n~l~~~~~~~~-----~~l~~L~~L~l~~n~~~~ 383 (627)
+....+..+++|+.|++++|.+.+..+..+... .++|++|++++|.+++.+|..+ ..+++|+.+++++|.+
T Consensus 211 ~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-- 288 (520)
T 2z7x_B 211 SILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-- 288 (520)
T ss_dssp HHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--
T ss_pred cchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--
Confidence 011234445555566665555543322222110 1256666666666666666655 6666666666666666
Q ss_pred ccc-hhhcCC---CCCcEeeccCCcccccCChhhhCCCCCCEEEccCCccccccChhhcCCCCCCEEECcCCcCcc--cC
Q 037951 384 SIP-KEMGKL---LNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLGDNNLSGVIPSSLGNLERLAILEMFANELSG--TI 457 (627)
Q Consensus 384 ~~~-~~~~~l---~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~--~~ 457 (627)
.+| ..+..+ ++|+.|++++|.+.... .+..+++|++|++++|.+++..|..+..+++|+.|++++|.+.+ .+
T Consensus 289 ~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~ 366 (520)
T 2z7x_B 289 GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKI 366 (520)
T ss_dssp CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHH
T ss_pred ecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccc
Confidence 233 333333 45666666666655321 12456666677777776666566666666667777777666664 34
Q ss_pred CccccccccCccEEEccCCccccCCCc-cccCCCCCCEEEccCCcccccCCccccCCCCCCEEECCCCcccccCChhccC
Q 037951 458 PGDIFNISSLSVSLDLAENHFVGSIPP-RIGNLKALRCFDVSNNDLSGEIPSELGLCSSLEEIYLAENFFNGFIPSFFRT 536 (627)
Q Consensus 458 ~~~~~~~~~ll~~L~l~~n~l~~~~~~-~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~ 536 (627)
|..+..++.+ ++|++++|.+.+.+|. .+..+++|++|++++|.+++..|..+. ++|++|++++|.++ .+|..+..
T Consensus 367 ~~~~~~l~~L-~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~ 442 (520)
T 2z7x_B 367 AEMTTQMKSL-QQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVK 442 (520)
T ss_dssp HHHHTTCTTC-CEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGG
T ss_pred hHHHhhCCCC-CEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhc
Confidence 4555666666 6677777766654443 356667777777777777656555543 56777777777776 45555556
Q ss_pred CCCCCEEECCCCcCccccchh-cccCc-CCeeeCcCCcccccCC
Q 037951 537 SRGIRKVDLSRNNFFGQIPIF-LEALS-LEYLNLSFNDFEGRLP 578 (627)
Q Consensus 537 l~~L~~L~ls~n~l~~~~p~~-~~~~~-L~~L~ls~n~l~~~~p 578 (627)
+++|++|++++|++. .+|.. +..++ |++|++++|++.+..+
T Consensus 443 l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~ 485 (520)
T 2z7x_B 443 LEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 485 (520)
T ss_dssp CTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCCCCEEECCCCcCC-ccCHHHhccCCcccEEECcCCCCcccCC
Confidence 777777777777776 34443 55555 7777777777765443
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-47 Score=415.20 Aligned_cols=466 Identities=20% Similarity=0.277 Sum_probs=367.6
Q ss_pred CCCCEEeCCCCcCcccCCccccCCCCCCEEEccCcccc------c------cCCccccCCCCCCeeeCCCCCCCCCCCCC
Q 037951 97 RRLETLLLSDNSLVGKIPANLSYCSRLTVLVLGNNKLV------G------SIPFEFVSLYKLKQLALPMNNLTGGIPPF 164 (627)
Q Consensus 97 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~------~------~~~~~l~~l~~L~~L~l~~n~l~~~~~~~ 164 (627)
.+++.|+|+++.+.|.+|.+++++++|++|++++|.+. + .+|... +..|+ ++++++.+.+.++..
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~ 157 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPRED 157 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGG
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchhh
Confidence 58899999999999999999999999999999999762 1 223222 44566 777777777666665
Q ss_pred CCCC-CCCCEEECCCCCCCCCCCCccCCCCCccEEEe--eCccccccCCccccCCCCCcEEEeecccCccC-CChhhhhc
Q 037951 165 LGNL-TSLEVVSLAGNPFGGNIPDSLGQLKELKTLGI--GGNNLSGSIPPSIYNLSFLVIFSVSENQMHGS-LPPSLGLY 240 (627)
Q Consensus 165 l~~l-~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l--~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~-~~~~~~~~ 240 (627)
+..+ ..+..+++....+.. .....++.+.+ ..|.+++ +|..++++++|+.|++++|.+++. ++..+.
T Consensus 158 ~~~~~~~l~~~~l~~~~~~~------~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~-- 228 (636)
T 4eco_A 158 FSDLIKDCINSDPQQKSIKK------SSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWE-- 228 (636)
T ss_dssp SCHHHHHHHHHCTTSCCCCC------CCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCS--
T ss_pred HHHHHHHHhhcCcccccccc------ccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCcccccccccccc--
Confidence 5521 222223333222221 11122222222 3567776 888888999999999998888763 211110
Q ss_pred CCCCceeccCCccccccCCcccc--CCCCCcEeecccccccccCccCcCCCCCcCEEeccCcc-CCCCCCCCccccccCC
Q 037951 241 FPNLKLFQTNENFFSGSIPISLS--NASKLEYVEIASNSFFGKLSVNFGGMKNLSYLILEYNN-LGSGESDEMGFMNSLA 317 (627)
Q Consensus 241 ~~~L~~L~l~~~~~~~~~~~~l~--~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~l~ 317 (627)
+ -......+.+|..+. ++++|++|++++|.+.+.+|..++++++|++|++++|. +++. .++..+.
T Consensus 229 -~------~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~-----~lp~~~~ 296 (636)
T 4eco_A 229 -N------ENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGE-----QLKDDWQ 296 (636)
T ss_dssp -C------TTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHH-----HHHHHHH
T ss_pred -c------cccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccc-----cchHHHH
Confidence 0 011122234777777 88888999998888888888888888999999999887 6540 1233333
Q ss_pred ------CCCcccEEEccCcccccccch--hHHhccccccEEEeecccccccCcccccCCCCCCEEeCCCCccccccchhh
Q 037951 318 ------NCSKLQVLSLGGNQFRGALPH--SIANLSSQLQILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSIPKEM 389 (627)
Q Consensus 318 ------~~~~L~~L~l~~n~~~~~~~~--~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~ 389 (627)
.+++|++|++++|+++ .+|. .+..+. +|++|++++|.+++.+| .+..+++|+.|++++|.++ .+|..+
T Consensus 297 ~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~-~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l 372 (636)
T 4eco_A 297 ALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMK-KLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANF 372 (636)
T ss_dssp HHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCT-TCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTS
T ss_pred hhhccccCCCCCEEECCCCcCC-ccCchhhhccCC-CCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhh
Confidence 3489999999999999 8888 788887 89999999999998888 8999999999999999999 788889
Q ss_pred cCCCC-CcEeeccCCcccccCChhhhCCC--CCCEEEccCCccccccChhhc-------CCCCCCEEECcCCcCcccCCc
Q 037951 390 GKLLN-LQGLDFGGNHFSGEIPSTLGNLS--SLYEIFLGDNNLSGVIPSSLG-------NLERLAILEMFANELSGTIPG 459 (627)
Q Consensus 390 ~~l~~-L~~L~L~~n~~~~~~~~~~~~~~--~L~~L~l~~n~~~~~~~~~l~-------~l~~L~~L~l~~n~l~~~~~~ 459 (627)
..+++ |+.|++++|.++ .+|..+..++ +|++|++++|.+++..|..+. .+++|+.|++++|.+. .+|.
T Consensus 373 ~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~ 450 (636)
T 4eco_A 373 CGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPK 450 (636)
T ss_dssp EEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCT
T ss_pred hhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC-cCCH
Confidence 99999 999999999999 7888777654 899999999999998888888 7889999999999999 7777
Q ss_pred cccc-cccCccEEEccCCccccCCCcc-ccCC-------CCCCEEEccCCcccccCCcccc--CCCCCCEEECCCCcccc
Q 037951 460 DIFN-ISSLSVSLDLAENHFVGSIPPR-IGNL-------KALRCFDVSNNDLSGEIPSELG--LCSSLEEIYLAENFFNG 528 (627)
Q Consensus 460 ~~~~-~~~ll~~L~l~~n~l~~~~~~~-l~~l-------~~L~~L~Ls~n~l~~~~~~~l~--~l~~L~~L~L~~n~i~~ 528 (627)
.++. ++.+ ++|++++|++. .+|.. +... ++|++|++++|+++ .+|..+. .+++|+.|++++|.+++
T Consensus 451 ~~~~~l~~L-~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~ 527 (636)
T 4eco_A 451 ELFSTGSPL-SSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK 527 (636)
T ss_dssp HHHHTTCCC-SEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS
T ss_pred HHHccCCCC-CEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC
Confidence 6554 7778 99999999998 55543 3333 39999999999999 8888887 99999999999999998
Q ss_pred cCChhccCCCCCCEEEC------CCCcCccccchhcccCc-CCeeeCcCCcccccCCCCCccCCCCccccccCCCCc
Q 037951 529 FIPSFFRTSRGIRKVDL------SRNNFFGQIPIFLEALS-LEYLNLSFNDFEGRLPTRGIFANASAISVGGCNRLC 598 (627)
Q Consensus 529 ~~~~~l~~l~~L~~L~l------s~n~l~~~~p~~~~~~~-L~~L~ls~n~l~~~~p~~~~~~~l~~l~~~~n~~l~ 598 (627)
+|..+..+++|+.|++ ++|.+.+.+|..+..++ |++|++++|++ +.+|.. .+++|+.+++.+||..|
T Consensus 528 -ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~-~~~~L~~L~Ls~N~l~~ 601 (636)
T 4eco_A 528 -FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEK-ITPNISVLDIKDNPNIS 601 (636)
T ss_dssp -CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSC-CCTTCCEEECCSCTTCE
T ss_pred -cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHh-HhCcCCEEECcCCCCcc
Confidence 8888999999999999 56788889999999888 99999999999 788865 44899999999999877
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-45 Score=394.16 Aligned_cols=455 Identities=17% Similarity=0.197 Sum_probs=324.4
Q ss_pred eeecCCCCcceecccccCCCCCCCEEECCCCCCcccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEEccCcc
Q 037951 53 TCDLRSKALSGLLSPQIGNLSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLTVLVLGNNK 132 (627)
Q Consensus 53 ~c~l~~~~l~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ls~n~ 132 (627)
..|+++++++. +|..+. ++|++|++++|.+++..|.+|.++++|++|++++|++++..|..|+++++|++|++++|+
T Consensus 4 ~l~ls~n~l~~-ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 80 (520)
T 2z7x_B 4 LVDRSKNGLIH-VPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK 80 (520)
T ss_dssp EEECTTSCCSS-CCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSC
T ss_pred eEecCCCCccc-cccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCc
Confidence 45889999985 566565 899999999999997777899999999999999999998889999999999999999999
Q ss_pred ccccCCccccCCCCCCeeeCCCCCCCC-CCCCCCCCCCCCCEEECCCCCCCCCCCCccCCCCCc--cEEEeeCccc--cc
Q 037951 133 LVGSIPFEFVSLYKLKQLALPMNNLTG-GIPPFLGNLTSLEVVSLAGNPFGGNIPDSLGQLKEL--KTLGIGGNNL--SG 207 (627)
Q Consensus 133 l~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L--~~L~l~~n~~--~~ 207 (627)
++ .+|.. .+++|++|++++|.+++ .+|..++++++|++|++++|.+.+ ..+..+++| ++|++++|.+ .+
T Consensus 81 l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~ 154 (520)
T 2z7x_B 81 LV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEK 154 (520)
T ss_dssp CC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSS
T ss_pred ee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccccc
Confidence 98 56655 89999999999999987 478899999999999999999985 456777888 9999999999 77
Q ss_pred cCCccccCCC-CCcEEEeecccCccCCChhhhhcCCCCceeccCCcc-------ccccCCccccCCCCCcEeeccccccc
Q 037951 208 SIPPSIYNLS-FLVIFSVSENQMHGSLPPSLGLYFPNLKLFQTNENF-------FSGSIPISLSNASKLEYVEIASNSFF 279 (627)
Q Consensus 208 ~~~~~l~~l~-~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~~~-------~~~~~~~~l~~~~~L~~L~l~~~~~~ 279 (627)
..|..+..+. ....+++++|.+.+.++......+++|+.+++++|. +.+.++ .+..+++|+.++++++.+.
T Consensus 155 ~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~ 233 (520)
T 2z7x_B 155 EDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIETT 233 (520)
T ss_dssp CCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEE
T ss_pred cccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhccccccccC
Confidence 7888887766 344567888888888877766678899999998886 565555 6777888888888887765
Q ss_pred ccCccCc---CCCCCcCEEeccCccCCCCCCCCccccccC-----CCCCcccEEEccCcccccccc-hhHHhcc--cccc
Q 037951 280 GKLSVNF---GGMKNLSYLILEYNNLGSGESDEMGFMNSL-----ANCSKLQVLSLGGNQFRGALP-HSIANLS--SQLQ 348 (627)
Q Consensus 280 ~~~~~~l---~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l-----~~~~~L~~L~l~~n~~~~~~~-~~~~~~~--~~L~ 348 (627)
+.....+ ...++|++|++++|.+++. ++..+ ..+++|+.+++++|.+ .+| ..+.... .+++
T Consensus 234 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~------~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~ 305 (520)
T 2z7x_B 234 WNSFIRILQLVWHTTVWYFSISNVKLQGQ------LDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIK 305 (520)
T ss_dssp HHHHHHHHHHHHTSSCSEEEEEEEEEESC------CCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCS
T ss_pred HHHHHHHHHHhhhCcccEEEeecccccCc------cccchhhcccccCceeEeccccccce--ecchhhhhcccccCcee
Confidence 4322111 1134677777777776641 22233 5667777777777766 344 3333331 1466
Q ss_pred EEEeecccccccCcccccCCCCCCEEeCCCCccccccchhhcCCCCCcEeeccCCcccc--cCChhhhCCCCCCEEEccC
Q 037951 349 ILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSG--EIPSTLGNLSSLYEIFLGD 426 (627)
Q Consensus 349 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~--~~~~~~~~~~~L~~L~l~~ 426 (627)
.|++++|.+.... .+..+++|+.|++++|++++..|..+..+++|+.|++++|++++ .+|..+..+++|++|++++
T Consensus 306 ~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~ 383 (520)
T 2z7x_B 306 NFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQ 383 (520)
T ss_dssp EEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCS
T ss_pred EEEcCCCcccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCC
Confidence 6666666554221 01344555555555555554445555555555555555555543 2233344444555555555
Q ss_pred CccccccChhhcCCCCCCEEECcCCcCcccCCcc-ccccccCccEEEccCCccccCCCccccCCCCCCEEEccCCccccc
Q 037951 427 NNLSGVIPSSLGNLERLAILEMFANELSGTIPGD-IFNISSLSVSLDLAENHFVGSIPPRIGNLKALRCFDVSNNDLSGE 505 (627)
Q Consensus 427 n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~-~~~~~~ll~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ 505 (627)
|.+++ .+|.. +..++.+ ++|++++|++.+..|..+. ++|++|++++|+++ .
T Consensus 384 N~l~~------------------------~l~~~~~~~l~~L-~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ 435 (520)
T 2z7x_B 384 NSVSY------------------------DEKKGDCSWTKSL-LSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-S 435 (520)
T ss_dssp SCCBC------------------------CGGGCSCCCCTTC-CEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-C
T ss_pred CcCCc------------------------ccccchhccCccC-CEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-c
Confidence 44443 33332 3333444 5555555555554444443 68899999999988 7
Q ss_pred CCccccCCCCCCEEECCCCcccccCChhccCCCCCCEEECCCCcCccccc
Q 037951 506 IPSELGLCSSLEEIYLAENFFNGFIPSFFRTSRGIRKVDLSRNNFFGQIP 555 (627)
Q Consensus 506 ~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~ls~n~l~~~~p 555 (627)
+|..+..+++|++|++++|+++...+..+..+++|+.|++++|++....+
T Consensus 436 ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~ 485 (520)
T 2z7x_B 436 IPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 485 (520)
T ss_dssp CCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred cchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcccCC
Confidence 88877889999999999999985444458889999999999999886544
|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-43 Score=387.95 Aligned_cols=506 Identities=22% Similarity=0.198 Sum_probs=408.0
Q ss_pred eecCCCCcceecccccCCCCCCCEEECCCCCCcccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEEccCccc
Q 037951 54 CDLRSKALSGLLSPQIGNLSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLTVLVLGNNKL 133 (627)
Q Consensus 54 c~l~~~~l~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ls~n~l 133 (627)
-|+++|.|+++.+.+|.++++|++|+|++|++++..+++|.++++|++|+|++|++++..+..|+++++|++|++++|++
T Consensus 57 LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l 136 (635)
T 4g8a_A 57 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNL 136 (635)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCC
T ss_pred EEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcC
Confidence 39999999999889999999999999999999988888999999999999999999977777899999999999999999
Q ss_pred cccCCccccCCCCCCeeeCCCCCCCC-CCCCCCCCCCCCCEEECCCCCCCCCCCCccCCCCCc----cEEEeeCcccccc
Q 037951 134 VGSIPFEFVSLYKLKQLALPMNNLTG-GIPPFLGNLTSLEVVSLAGNPFGGNIPDSLGQLKEL----KTLGIGGNNLSGS 208 (627)
Q Consensus 134 ~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L----~~L~l~~n~~~~~ 208 (627)
++..+..|+++++|++|++++|.+++ ..|..++++++|++|++++|.+++..+..+..+.++ ..++++.|.+...
T Consensus 137 ~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i 216 (635)
T 4g8a_A 137 ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFI 216 (635)
T ss_dssp CCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEE
T ss_pred CCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCccccc
Confidence 97777789999999999999999976 467888999999999999999998878777666544 4788999988854
Q ss_pred CCccccCCCCCcEEEeecccCccCCChhhhhcCCCCceeccCCccc------cccCCccccCCCCCcEeeccccccc---
Q 037951 209 IPPSIYNLSFLVIFSVSENQMHGSLPPSLGLYFPNLKLFQTNENFF------SGSIPISLSNASKLEYVEIASNSFF--- 279 (627)
Q Consensus 209 ~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~~~~------~~~~~~~l~~~~~L~~L~l~~~~~~--- 279 (627)
.+. ......++.+++.+|......+......+..++...+..+.. .......+.....+...++..+...
T Consensus 217 ~~~-~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 295 (635)
T 4g8a_A 217 QPG-AFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYL 295 (635)
T ss_dssp CTT-TTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCE
T ss_pred Ccc-cccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccc
Confidence 444 444456778888888766555544444566666555433222 2222333444555555555444322
Q ss_pred ccCccCcCCCCCcCEEeccCccCCCCCCCCccccccCCCCCcccEEEccCcccccccchhHHhccccccEEEeecccccc
Q 037951 280 GKLSVNFGGMKNLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLSSQLQILVLGTNQLYG 359 (627)
Q Consensus 280 ~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 359 (627)
......+....+++.+.+..+.+... ..+.....++.|++.+|.+....+.. . ..++.+++..|....
T Consensus 296 ~~~~~~~~~~~~l~~l~~~~~~~~~~--------~~~~~~~~L~~L~l~~~~~~~~~~~~---l-~~L~~l~l~~n~~~~ 363 (635)
T 4g8a_A 296 DGIIDLFNCLTNVSSFSLVSVTIERV--------KDFSYNFGWQHLELVNCKFGQFPTLK---L-KSLKRLTFTSNKGGN 363 (635)
T ss_dssp EECTTTTGGGTTCSEEEEESCEEEEC--------GGGGSCCCCSEEEEESCEESSCCCCB---C-TTCCEEEEESCCSCC
T ss_pred cchhhhhhhhcccccccccccccccc--------cccccchhhhhhhcccccccCcCccc---c-hhhhhcccccccCCC
Confidence 22334456678889999888876552 24556678999999999887544332 2 378999999998764
Q ss_pred cCcccccCCCCCCEEeCCCCccc--cccchhhcCCCCCcEeeccCCcccccCChhhhCCCCCCEEEccCCccccccC-hh
Q 037951 360 SIPSGIGNLVNLYSLQTEENQFT--GSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLGDNNLSGVIP-SS 436 (627)
Q Consensus 360 ~~~~~~~~l~~L~~L~l~~n~~~--~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~ 436 (627)
.. ....+++|+.+++++|.+. +..+..+..+.+|+.+++..+... ..+..+..+++|+.++++++......+ ..
T Consensus 364 ~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~-~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~ 440 (635)
T 4g8a_A 364 AF--SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSV 440 (635)
T ss_dssp BC--CCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEE-EECSCCTTCTTCCEEECTTSEEESTTSSCT
T ss_pred Cc--ccccccccccchhhccccccccccccchhhhhhhhhhhccccccc-cccccccccccccchhhhhccccccccccc
Confidence 33 3457899999999999875 345666778899999999999987 445567889999999999988665443 45
Q ss_pred hcCCCCCCEEECcCCcCcccCCccccccccCccEEEccCCccc-cCCCccccCCCCCCEEEccCCcccccCCccccCCCC
Q 037951 437 LGNLERLAILEMFANELSGTIPGDIFNISSLSVSLDLAENHFV-GSIPPRIGNLKALRCFDVSNNDLSGEIPSELGLCSS 515 (627)
Q Consensus 437 l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~ll~~L~l~~n~l~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~ 515 (627)
+..+++++.++++.|.+.+..+..+..+..+ ++|++++|.+. +..|..+..+++|++|++++|++++..|..|+.+++
T Consensus 441 ~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L-~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~ 519 (635)
T 4g8a_A 441 FLSLRNLIYLDISHTHTRVAFNGIFNGLSSL-EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSS 519 (635)
T ss_dssp TTTCTTCCEEECTTSCCEECCTTTTTTCTTC-CEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred cccccccccccccccccccccccccccchhh-hhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCC
Confidence 7889999999999999998888888888888 89999999854 456788999999999999999999888999999999
Q ss_pred CCEEECCCCcccccCChhccCCCCCCEEECCCCcCccccchhcccC-c-CCeeeCcCCccccc
Q 037951 516 LEEIYLAENFFNGFIPSFFRTSRGIRKVDLSRNNFFGQIPIFLEAL-S-LEYLNLSFNDFEGR 576 (627)
Q Consensus 516 L~~L~L~~n~i~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~~-~-L~~L~ls~n~l~~~ 576 (627)
|++|+|++|++++..|..|..+++|++||+++|++++..|..+... + |++|++++|++...
T Consensus 520 L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~ 582 (635)
T 4g8a_A 520 LQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT 582 (635)
T ss_dssp CCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCS
T ss_pred CCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCccc
Confidence 9999999999999999999999999999999999999999888876 4 99999999999754
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-44 Score=398.37 Aligned_cols=461 Identities=18% Similarity=0.186 Sum_probs=362.1
Q ss_pred CCCCEEeCCCCcCcccCCccccCCCCCCEEEc-cCccccccCCccccCC-CCCCe-----ee------------------
Q 037951 97 RRLETLLLSDNSLVGKIPANLSYCSRLTVLVL-GNNKLVGSIPFEFVSL-YKLKQ-----LA------------------ 151 (627)
Q Consensus 97 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l-s~n~l~~~~~~~l~~l-~~L~~-----L~------------------ 151 (627)
.+++.|+|+++.+.|.+|..++++++|++|+| ++|.+.+..+...... ..+.. +.
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~ 402 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence 57999999999999999999999999999999 8888876533221111 00000 00
Q ss_pred -----CCCCCCCCCCCCCCCCCCCCCEEECCC--CCCCCCCCCccCCCCCccEEEeeCccccc-----------------
Q 037951 152 -----LPMNNLTGGIPPFLGNLTSLEVVSLAG--NPFGGNIPDSLGQLKELKTLGIGGNNLSG----------------- 207 (627)
Q Consensus 152 -----l~~n~l~~~~~~~l~~l~~L~~L~L~~--n~~~~~~~~~l~~l~~L~~L~l~~n~~~~----------------- 207 (627)
+..+. ...+........++.+.+.. |.+++ +|..+.++++|++|++++|.+++
T Consensus 403 l~~~~l~~~~--~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g 479 (876)
T 4ecn_A 403 LLQDAINRNP--EMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQ 479 (876)
T ss_dssp HHHHHHHTCT--TSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHH
T ss_pred HHHHHhhhCc--cccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccc
Confidence 00000 00111122333455555544 77887 88999999999999999999998
Q ss_pred cCCcccc--CCCCCcEEEeecccCccCCChhhhhcCCCCceeccCCcc-ccc-cCCccccCCC-------CCcEeecccc
Q 037951 208 SIPPSIY--NLSFLVIFSVSENQMHGSLPPSLGLYFPNLKLFQTNENF-FSG-SIPISLSNAS-------KLEYVEIASN 276 (627)
Q Consensus 208 ~~~~~l~--~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~~~-~~~-~~~~~l~~~~-------~L~~L~l~~~ 276 (627)
.+|..++ .+++|+.|++++|.+.+.+|..+.. +++|+.|++++|. +++ .+|..+..++ +|+.|++++|
T Consensus 480 ~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~-L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N 558 (876)
T 4ecn_A 480 YENEELSWSNLKDLTDVELYNCPNMTQLPDFLYD-LPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN 558 (876)
T ss_dssp HTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGG-CSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSS
T ss_pred cCChhhhhccCCCCCEEECcCCCCCccChHHHhC-CCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCC
Confidence 3899988 9999999999999999999987776 9999999999998 888 7887666554 9999999999
Q ss_pred cccccCcc--CcCCCCCcCEEeccCccCCCCCCCCccccccCCCCCcccEEEccCcccccccchhHHhccccccEEEeec
Q 037951 277 SFFGKLSV--NFGGMKNLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLSSQLQILVLGT 354 (627)
Q Consensus 277 ~~~~~~~~--~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~ 354 (627)
.+. .+|. .++.+++|+.|++++|.++.+ + .+..+++|+.|++++|.+. .+|..+..+..+|+.|++++
T Consensus 559 ~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~~l-------p-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~ 628 (876)
T 4ecn_A 559 NLE-EFPASASLQKMVKLGLLDCVHNKVRHL-------E-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSH 628 (876)
T ss_dssp CCC-BCCCHHHHTTCTTCCEEECTTSCCCBC-------C-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCS
T ss_pred cCC-ccCChhhhhcCCCCCEEECCCCCcccc-------h-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcC
Confidence 998 6777 899999999999999998742 3 6888999999999999999 88888888873399999999
Q ss_pred ccccccCcccccCCCC--CCEEeCCCCccccccchh---hc--CCCCCcEeeccCCcccccCChh-hhCCCCCCEEEccC
Q 037951 355 NQLYGSIPSGIGNLVN--LYSLQTEENQFTGSIPKE---MG--KLLNLQGLDFGGNHFSGEIPST-LGNLSSLYEIFLGD 426 (627)
Q Consensus 355 n~l~~~~~~~~~~l~~--L~~L~l~~n~~~~~~~~~---~~--~l~~L~~L~L~~n~~~~~~~~~-~~~~~~L~~L~l~~ 426 (627)
|.++ .+|..+...+. |+.|++++|.+.+.+|.. +. .+++|+.|++++|.+. .+|.. +..+++|+.|++++
T Consensus 629 N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~ 706 (876)
T 4ecn_A 629 NKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSN 706 (876)
T ss_dssp SCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCS
T ss_pred CCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCC
Confidence 9998 77887776654 999999999998765532 22 3458999999999999 55554 55899999999999
Q ss_pred CccccccChhhcC--------CCCCCEEECcCCcCcccCCcccc--ccccCccEEEccCCccccCCCccccCCCCCCEEE
Q 037951 427 NNLSGVIPSSLGN--------LERLAILEMFANELSGTIPGDIF--NISSLSVSLDLAENHFVGSIPPRIGNLKALRCFD 496 (627)
Q Consensus 427 n~~~~~~~~~l~~--------l~~L~~L~l~~n~l~~~~~~~~~--~~~~ll~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 496 (627)
|.++ .+|..+.. +++|+.|++++|.+. .+|..+. .++++ +.|++++|++.+ +|..+.++++|+.|+
T Consensus 707 N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L-~~L~Ls~N~L~~-lp~~l~~L~~L~~L~ 782 (876)
T 4ecn_A 707 NLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYL-SNMDVSYNCFSS-FPTQPLNSSQLKAFG 782 (876)
T ss_dssp CCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTC-CEEECCSSCCSS-CCCGGGGCTTCCEEE
T ss_pred CcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCc-CEEEeCCCCCCc-cchhhhcCCCCCEEE
Confidence 9998 55554433 238999999999999 8888876 77777 778888887775 676777777777777
Q ss_pred ccCCcccccCCccccCCCCCCEEECCCCcccccCChhccCCCCCCEEECCCCcCccccchhcccCcCCeeeCcCCccccc
Q 037951 497 VSNNDLSGEIPSELGLCSSLEEIYLAENFFNGFIPSFFRTSRGIRKVDLSRNNFFGQIPIFLEALSLEYLNLSFNDFEGR 576 (627)
Q Consensus 497 Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~~~L~~L~ls~n~l~~~ 576 (627)
+++|+ ++++|.+.+.+|..+..+++|+.|++++|.+ +.+|..+. ..|+.||+++|++...
T Consensus 783 Ls~N~------------------~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~-~~L~~LdLs~N~l~~i 842 (876)
T 4ecn_A 783 IRHQR------------------DAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT-PQLYILDIADNPNISI 842 (876)
T ss_dssp CCCCB------------------CTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC-SSSCEEECCSCTTCEE
T ss_pred CCCCC------------------CcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc-CCCCEEECCCCCCCcc
Confidence 77776 5677999999999999999999999999999 68887755 2599999999999765
Q ss_pred CCCCC-ccCCCCccccccCCCC
Q 037951 577 LPTRG-IFANASAISVGGCNRL 597 (627)
Q Consensus 577 ~p~~~-~~~~l~~l~~~~n~~l 597 (627)
-+... .........+.+|+..
T Consensus 843 ~~~~~~~~~~~~~~~L~~n~~~ 864 (876)
T 4ecn_A 843 DVTSVCPYIEAGMYVLLYDKTQ 864 (876)
T ss_dssp ECGGGHHHHHTTCCEEECCTTS
T ss_pred ChHHccccccchheeecCCCcc
Confidence 54321 1223445556666544
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=9e-43 Score=375.79 Aligned_cols=178 Identities=20% Similarity=0.236 Sum_probs=88.5
Q ss_pred CCCcEeeccCCcccccCChhhhCCCCCCEEEccCCccccccChhhcCCCCCCEEECcCCcCcc--cCCccccccccCccE
Q 037951 393 LNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLGDNNLSGVIPSSLGNLERLAILEMFANELSG--TIPGDIFNISSLSVS 470 (627)
Q Consensus 393 ~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~--~~~~~~~~~~~ll~~ 470 (627)
.+|+.|++++|.+.... ....+++|++|++++|.+++..|..+..+++|+.|++++|.+.+ .+|..+..++.+ ++
T Consensus 331 ~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L-~~ 407 (562)
T 3a79_B 331 MNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSL-ET 407 (562)
T ss_dssp CCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTC-CE
T ss_pred CcceEEEccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCC-CE
Confidence 34555555555543211 11344555555555555554445555555555555555555543 122334444455 55
Q ss_pred EEccCCccccCCCc-cccCCCCCCEEEccCCcccccCCccccCCCCCCEEECCCCcccccCChhccCCCCCCEEECCCCc
Q 037951 471 LDLAENHFVGSIPP-RIGNLKALRCFDVSNNDLSGEIPSELGLCSSLEEIYLAENFFNGFIPSFFRTSRGIRKVDLSRNN 549 (627)
Q Consensus 471 L~l~~n~l~~~~~~-~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~ls~n~ 549 (627)
|++++|.+.+.+|. .+..+++|++|++++|++++..|..+. ++|++|++++|.++ .+|..+..+++|+.|++++|+
T Consensus 408 L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~ 484 (562)
T 3a79_B 408 LDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQ 484 (562)
T ss_dssp EECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSC
T ss_pred EECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCC
Confidence 55555555543332 244555555555555555544444332 45555555555555 344434455555555555555
Q ss_pred Cccccchh-cccCc-CCeeeCcCCcccccC
Q 037951 550 FFGQIPIF-LEALS-LEYLNLSFNDFEGRL 577 (627)
Q Consensus 550 l~~~~p~~-~~~~~-L~~L~ls~n~l~~~~ 577 (627)
+. .+|.. +..++ |+.|++++|++.+..
T Consensus 485 l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c 513 (562)
T 3a79_B 485 LK-SVPDGVFDRLTSLQYIWLHDNPWDCTC 513 (562)
T ss_dssp CC-CCCTTSTTTCTTCCCEECCSCCBCCCH
T ss_pred CC-CCCHHHHhcCCCCCEEEecCCCcCCCc
Confidence 55 33332 44444 555555555555443
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.4e-42 Score=368.25 Aligned_cols=456 Identities=18% Similarity=0.183 Sum_probs=274.8
Q ss_pred eeecCCCCcceecccccCCCCCCCEEECCCCCCcccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEEccCcc
Q 037951 53 TCDLRSKALSGLLSPQIGNLSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLTVLVLGNNK 132 (627)
Q Consensus 53 ~c~l~~~~l~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ls~n~ 132 (627)
..|++++++++ +|..+. +++++|++++|.+++..+.+|.++++|++|++++|.+++..|..|.++++|++|++++|+
T Consensus 35 ~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 111 (562)
T 3a79_B 35 MVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNR 111 (562)
T ss_dssp EEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSC
T ss_pred EEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCc
Confidence 44667777765 344443 677777777777776555677777777777777777776667777777777777777777
Q ss_pred ccccCCccccCCCCCCeeeCCCCCCCC-CCCCCCCCCCCCCEEECCCCCCCCCCCCccCCCCCc--cEEEeeCccc--cc
Q 037951 133 LVGSIPFEFVSLYKLKQLALPMNNLTG-GIPPFLGNLTSLEVVSLAGNPFGGNIPDSLGQLKEL--KTLGIGGNNL--SG 207 (627)
Q Consensus 133 l~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L--~~L~l~~n~~--~~ 207 (627)
++ .+|.. .+++|++|++++|.+++ ..|..++++++|++|++++|.+.+. .+..+++| ++|++++|.+ ++
T Consensus 112 l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~ 185 (562)
T 3a79_B 112 LQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKG 185 (562)
T ss_dssp CC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCS
T ss_pred CC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccccccc
Confidence 76 44444 67777777777777765 2346677777777777777777643 23334444 7777777776 55
Q ss_pred cCCccccCCC--CCcEEEeecccCccCCChhhhhcCCCCceeccCCcc-----ccccCCccccCCCCCcEeecccccccc
Q 037951 208 SIPPSIYNLS--FLVIFSVSENQMHGSLPPSLGLYFPNLKLFQTNENF-----FSGSIPISLSNASKLEYVEIASNSFFG 280 (627)
Q Consensus 208 ~~~~~l~~l~--~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~~~-----~~~~~~~~l~~~~~L~~L~l~~~~~~~ 280 (627)
..|..+..+. .+ .+++++|.+.+.++......+++|+.+++++|. +.+. ...+..+++++.+++.++.+.+
T Consensus 186 ~~~~~l~~l~~~~l-~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~-~~~l~~l~~L~~L~L~~~~l~~ 263 (562)
T 3a79_B 186 GETESLQIPNTTVL-HLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTF-LSELTRGPTLLNVTLQHIETTW 263 (562)
T ss_dssp SSCCEEEECCEEEE-EEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHH-HHHHHSCSSCEEEEEEEEEECH
T ss_pred cCcccccccCcceE-EEEecCccchhhhhhhcccccceEEEecccccccccchHHHH-HHHHhccCcceEEEecCCcCcH
Confidence 5566655543 22 345556665555544444344555555555542 1111 1123344444444444443321
Q ss_pred cCccCcCCCCCcCEEeccCccCCCCCCCCccccccCCCCCcccEEEccCcccccccchhH-----HhccccccEEEeecc
Q 037951 281 KLSVNFGGMKNLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSI-----ANLSSQLQILVLGTN 355 (627)
Q Consensus 281 ~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~-----~~~~~~L~~L~l~~n 355 (627)
.... ..+.. ...++|++|++++|.+++.+|..+ ..+. .|+.+++..+
T Consensus 264 ~~~~--------------------------~~~~~-~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~-~L~~~~~~~~ 315 (562)
T 3a79_B 264 KCSV--------------------------KLFQF-FWPRPVEYLNIYNLTITERIDREEFTYSETALK-SLMIEHVKNQ 315 (562)
T ss_dssp HHHH--------------------------HHHHH-HTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCC-EEEEEEEEEC
T ss_pred HHHH--------------------------HHHHh-hhcccccEEEEeccEeeccccchhhhcccccch-heehhhcccc
Confidence 1000 00000 112245555555555554444433 2221 2333333333
Q ss_pred cccccCc-cccc---CCCCCCEEeCCCCccccccchhhcCCCCCcEeeccCCcccccCChhhhCCCCCCEEEccCCcccc
Q 037951 356 QLYGSIP-SGIG---NLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLGDNNLSG 431 (627)
Q Consensus 356 ~l~~~~~-~~~~---~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~ 431 (627)
.+ .+| ..+. ...+|+.|++++|.+.... ....+++|+.|++++|.+++..|..+..+++|++|++++|.+++
T Consensus 316 ~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 391 (562)
T 3a79_B 316 VF--LFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKN 391 (562)
T ss_dssp CC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCB
T ss_pred ee--ecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCC
Confidence 33 112 1111 1145666666666554221 11456667777777777666666666667777777777776664
Q ss_pred --ccChhhcCCCCCCEEECcCCcCcccCCcc-ccccccCccEEEccCCccccCCCccccCCCCCCEEEccCCcccccCCc
Q 037951 432 --VIPSSLGNLERLAILEMFANELSGTIPGD-IFNISSLSVSLDLAENHFVGSIPPRIGNLKALRCFDVSNNDLSGEIPS 508 (627)
Q Consensus 432 --~~~~~l~~l~~L~~L~l~~n~l~~~~~~~-~~~~~~ll~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~ 508 (627)
..|..+..+++|+.|++++|.+.+.+|.. +..++.+ ++|++++|++.+..|..+. ++|++|++++|+++ .+|.
T Consensus 392 ~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L-~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~ 467 (562)
T 3a79_B 392 FFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESI-LVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPK 467 (562)
T ss_dssp TTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTC-CEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCT
T ss_pred cccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccC-CEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccCh
Confidence 22345666777777777777776545543 4455566 7777777777765555443 68999999999998 7888
Q ss_pred cccCCCCCCEEECCCCcccccCChhccCCCCCCEEECCCCcCccccc
Q 037951 509 ELGLCSSLEEIYLAENFFNGFIPSFFRTSRGIRKVDLSRNNFFGQIP 555 (627)
Q Consensus 509 ~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~ls~n~l~~~~p 555 (627)
.+..+++|++|++++|+++...+..+..+++|+.|++++|++.+..+
T Consensus 468 ~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~ 514 (562)
T 3a79_B 468 DVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 514 (562)
T ss_dssp TTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCCHH
T ss_pred hhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCCcc
Confidence 77799999999999999995444448899999999999999987555
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-40 Score=347.20 Aligned_cols=391 Identities=19% Similarity=0.200 Sum_probs=258.8
Q ss_pred CCCCcccceeecCCCCcceecccccCCCCCCCEEECCCCCCcccCCcccCCCCCCCEEeCCCCcCccc-CCccccCCCCC
Q 037951 45 HFCEWEGITCDLRSKALSGLLSPQIGNLSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGK-IPANLSYCSRL 123 (627)
Q Consensus 45 ~~c~~~~~~c~l~~~~l~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~-~~~~~~~l~~L 123 (627)
..|.|.+...++.+++++.. |. +. ++|++|++++|.+++..|..|.++++|++|++++|.+.+. .+..|.++++|
T Consensus 6 ~~c~~~~~~~~c~~~~l~~l-p~-l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L 81 (455)
T 3v47_A 6 SECSVIGYNAICINRGLHQV-PE-LP--AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSL 81 (455)
T ss_dssp -CCEEETTEEECCSSCCSSC-CC-CC--TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTC
T ss_pred ceeEEEccccCcCCCCcccC-CC-CC--CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccC
Confidence 45777776667777777654 33 32 7899999999999988899999999999999999998744 46679999999
Q ss_pred CEEEccCccccccCCccccCCCCCCeeeCCCCCCCCCCCCC--CCCCCCCCEEECCCCCCCCCCCCc-cCCCCCccEEEe
Q 037951 124 TVLVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTGGIPPF--LGNLTSLEVVSLAGNPFGGNIPDS-LGQLKELKTLGI 200 (627)
Q Consensus 124 ~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~--l~~l~~L~~L~L~~n~~~~~~~~~-l~~l~~L~~L~l 200 (627)
++|++++|++++..|..++++++|++|++++|.+++..+.. +.++++|++|++++|.+.+..|.. +..+++|++|++
T Consensus 82 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L 161 (455)
T 3v47_A 82 IILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDL 161 (455)
T ss_dssp CEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEEC
T ss_pred CEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeC
Confidence 99999999999888999999999999999999998744444 899999999999999999877766 889999999999
Q ss_pred eCccccccCCccccCC--CCCcEEEeecccCccCCChhhhh-------cCCCCceeccCCccccccCCccccCC---CCC
Q 037951 201 GGNNLSGSIPPSIYNL--SFLVIFSVSENQMHGSLPPSLGL-------YFPNLKLFQTNENFFSGSIPISLSNA---SKL 268 (627)
Q Consensus 201 ~~n~~~~~~~~~l~~l--~~L~~L~l~~n~l~~~~~~~~~~-------~~~~L~~L~l~~~~~~~~~~~~l~~~---~~L 268 (627)
++|.+.+..+..+..+ .+++.+++++|.+.+..+..+.. ..++|++|++++|.+.+..+..+... ++|
T Consensus 162 ~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L 241 (455)
T 3v47_A 162 TFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKI 241 (455)
T ss_dssp TTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCE
T ss_pred CCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccce
Confidence 9999998888877765 67888888888887543332210 13445555555555554444333322 444
Q ss_pred cEeecccccccccCccCcCCCCCcCEEeccCccCCCCCCCCccccccCCCCCcccEEEccCcccccccchhHHhcccccc
Q 037951 269 EYVEIASNSFFGKLSVNFGGMKNLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLSSQLQ 348 (627)
Q Consensus 269 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~ 348 (627)
+.+++++|...+.... .+.+...... ...-...++|+.|++++|.+++..|..+..+. +|+
T Consensus 242 ~~L~l~~~~~~~~~~~--------------~~~~~~~~~~----~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~-~L~ 302 (455)
T 3v47_A 242 QSLILSNSYNMGSSFG--------------HTNFKDPDNF----TFKGLEASGVKTCDLSKSKIFALLKSVFSHFT-DLE 302 (455)
T ss_dssp EEEECTTCTTTSCCTT--------------CCSSCCCCTT----TTGGGTTSCCCEEECCSSCCCEECTTTTTTCT-TCC
T ss_pred eeEeeccccccccccc--------------hhhhccCccc----ccccccccCceEEEecCccccccchhhcccCC-CCC
Confidence 4444444433221100 0001000000 00001124566666666666655555555554 566
Q ss_pred EEEeecccccccCcccccCCCCCCEEeCCCCccccccchhhcCCCCCcEeeccCCcccccCChhhhCCCCCCEEEccCCc
Q 037951 349 ILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLGDNN 428 (627)
Q Consensus 349 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~ 428 (627)
+|++++|++.+..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|++++..|..|..+++|++|++++|+
T Consensus 303 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~ 382 (455)
T 3v47_A 303 QLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQ 382 (455)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCc
Confidence 66666666655555555556666666666666655555555556666666666666655555555556666666666666
Q ss_pred cccccChhhcCCCCCCEEECcCCcCcccCC
Q 037951 429 LSGVIPSSLGNLERLAILEMFANELSGTIP 458 (627)
Q Consensus 429 ~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~ 458 (627)
+++..+..+..+++|+.|++++|++.+..|
T Consensus 383 l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 383 LKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred cccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 654444445555666666666665554444
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-38 Score=334.02 Aligned_cols=390 Identities=18% Similarity=0.210 Sum_probs=251.6
Q ss_pred CEEECCCCCCcccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEEccCcccccc-CCccccCCCCCCeeeCCC
Q 037951 76 REINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLTVLVLGNNKLVGS-IPFEFVSLYKLKQLALPM 154 (627)
Q Consensus 76 ~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~-~~~~l~~l~~L~~L~l~~ 154 (627)
+.++.++++++ .+|. +. ++|++|+|++|.+++..|..|+++++|++|++++|.+.+. .+..|.++++|++|++++
T Consensus 13 ~~~~c~~~~l~-~lp~-l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~ 88 (455)
T 3v47_A 13 YNAICINRGLH-QVPE-LP--AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY 88 (455)
T ss_dssp TEEECCSSCCS-SCCC-CC--TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTT
T ss_pred cccCcCCCCcc-cCCC-CC--CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCC
Confidence 56788888876 5665 33 7889999999988877788888888888888888887633 356678888888888888
Q ss_pred CCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCC--ccCCCCCccEEEeeCccccccCCcc-ccCCCCCcEEEeecccCcc
Q 037951 155 NNLTGGIPPFLGNLTSLEVVSLAGNPFGGNIPD--SLGQLKELKTLGIGGNNLSGSIPPS-IYNLSFLVIFSVSENQMHG 231 (627)
Q Consensus 155 n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~--~l~~l~~L~~L~l~~n~~~~~~~~~-l~~l~~L~~L~l~~n~l~~ 231 (627)
|.+++..|..++++++|++|++++|.+++..+. .+..+++|++|++++|.+.+..|.. +..+++|+.|++++|.+.+
T Consensus 89 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~ 168 (455)
T 3v47_A 89 NQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKS 168 (455)
T ss_dssp CTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSC
T ss_pred CccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccc
Confidence 888776677788888888888888877753333 3666777777777777666554443 4555555555555555543
Q ss_pred CCChhhhhcCCCCceeccCCccccccCCccccCC--CCCcEeecccccccccCccCcCCCCCcCEEeccCccCCCCCCCC
Q 037951 232 SLPPSLGLYFPNLKLFQTNENFFSGSIPISLSNA--SKLEYVEIASNSFFGKLSVNFGGMKNLSYLILEYNNLGSGESDE 309 (627)
Q Consensus 232 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~--~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~ 309 (627)
..+.. +..+ .+++.+++++|.+.+..+..++
T Consensus 169 ~~~~~-------------------------l~~l~~~~L~~L~l~~n~l~~~~~~~~~---------------------- 201 (455)
T 3v47_A 169 ICEED-------------------------LLNFQGKHFTLLRLSSITLQDMNEYWLG---------------------- 201 (455)
T ss_dssp CCTTT-------------------------SGGGTTCEEEEEECTTCBCTTCSTTCTT----------------------
T ss_pred cChhh-------------------------hhccccccccccccccCcccccchhhcc----------------------
Confidence 33322 2222 3444444444443332221110
Q ss_pred ccccccCCCCCcccEEEccCcccccccchhHHhcc--ccccEEEeecccccccCcccccCCCCCCEEeCCCCccccccch
Q 037951 310 MGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLS--SQLQILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSIPK 387 (627)
Q Consensus 310 ~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 387 (627)
+.....+..+++|++|++++|.+++..|..+.... .+++.|++++|...+... ..+.+....+.
T Consensus 202 ~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--------------~~~~~~~~~~~ 267 (455)
T 3v47_A 202 WEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSF--------------GHTNFKDPDNF 267 (455)
T ss_dssp HHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCT--------------TCCSSCCCCTT
T ss_pred ccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeecccccccccc--------------chhhhccCccc
Confidence 01112344567888888888888877777766541 367777777765543211 11111111111
Q ss_pred hhc--CCCCCcEeeccCCcccccCChhhhCCCCCCEEEccCCccccccChhhcCCCCCCEEECcCCcCcccCCccccccc
Q 037951 388 EMG--KLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLGDNNLSGVIPSSLGNLERLAILEMFANELSGTIPGDIFNIS 465 (627)
Q Consensus 388 ~~~--~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~ 465 (627)
.+. ..++|+.|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|
T Consensus 268 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L---------------------- 325 (455)
T 3v47_A 268 TFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHL---------------------- 325 (455)
T ss_dssp TTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTC----------------------
T ss_pred ccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccC----------------------
Confidence 111 12455555555555555555555555555555555555554444444444444
Q ss_pred cCccEEEccCCccccCCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEECCCCcccccCChhccCCCCCCEEEC
Q 037951 466 SLSVSLDLAENHFVGSIPPRIGNLKALRCFDVSNNDLSGEIPSELGLCSSLEEIYLAENFFNGFIPSFFRTSRGIRKVDL 545 (627)
Q Consensus 466 ~ll~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l 545 (627)
++|++++|.+.+..+..+..+++|++|++++|++++..|..+..+++|++|++++|++++..+..+..+++|+.|++
T Consensus 326 ---~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l 402 (455)
T 3v47_A 326 ---LKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWL 402 (455)
T ss_dssp ---CEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred ---CEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEc
Confidence 45555555555455566778888999999999998777888899999999999999999877777888999999999
Q ss_pred CCCcCccccc
Q 037951 546 SRNNFFGQIP 555 (627)
Q Consensus 546 s~n~l~~~~p 555 (627)
++|++.+..|
T Consensus 403 ~~N~l~~~~~ 412 (455)
T 3v47_A 403 HTNPWDCSCP 412 (455)
T ss_dssp CSSCBCCCTT
T ss_pred cCCCcccCCC
Confidence 9999988777
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-39 Score=335.84 Aligned_cols=416 Identities=22% Similarity=0.310 Sum_probs=202.6
Q ss_pred CCCCCCEEECCCCCCcccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEEccCccccccCCccccCCCCCCee
Q 037951 71 NLSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQL 150 (627)
Q Consensus 71 ~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L 150 (627)
+.++|++|++++|.+ +.+|.+|+++++|++|++++|.+.+.+|..++++.+|+.+++++|.. .++++|
T Consensus 9 ~~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~-----------~~l~~L 76 (454)
T 1jl5_A 9 SNTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD-----------RQAHEL 76 (454)
T ss_dssp --------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHH-----------HTCSEE
T ss_pred ccccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhc-----------cCCCEE
Confidence 356777888888877 57777788888888888888777777777777777664444443321 234555
Q ss_pred eCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCccCCCCCccEEEeeCccccccCCccccCCCCCcEEEeecccCc
Q 037951 151 ALPMNNLTGGIPPFLGNLTSLEVVSLAGNPFGGNIPDSLGQLKELKTLGIGGNNLSGSIPPSIYNLSFLVIFSVSENQMH 230 (627)
Q Consensus 151 ~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~ 230 (627)
++++|.+++ +|.. .++|++|++++|.+++ +|.. .++|++|++++|.+++ ++.. .++|+.|++++|.+.
T Consensus 77 ~l~~~~l~~-lp~~---~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~ 144 (454)
T 1jl5_A 77 ELNNLGLSS-LPEL---PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLE 144 (454)
T ss_dssp ECTTSCCSC-CCSC---CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCS
T ss_pred EecCCcccc-CCCC---cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCC
Confidence 555555553 2221 2455555555555553 3322 2455555555555442 1110 023444444444333
Q ss_pred cCCChhhhhcCCCCceeccCCccccccCCccccCCCCCcEeecccccccccCccCcCCCCCcCEEeccCccCCCCCCCCc
Q 037951 231 GSLPPSLGLYFPNLKLFQTNENFFSGSIPISLSNASKLEYVEIASNSFFGKLSVNFGGMKNLSYLILEYNNLGSGESDEM 310 (627)
Q Consensus 231 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~ 310 (627)
+ +| .+..+++|++|++++|.+.+ +|.. .++|++|++++|.+++++
T Consensus 145 -------------------------~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~l~---- 189 (454)
T 1jl5_A 145 -------------------------K-LP-ELQNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEELP---- 189 (454)
T ss_dssp -------------------------S-CC-CCTTCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSSCC----
T ss_pred -------------------------C-Cc-ccCCCCCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCcCc----
Confidence 2 22 23444455555555554443 2211 135555555555554421
Q ss_pred cccccCCCCCcccEEEccCcccccccchhHHhccccccEEEeecccccccCcccccCCCCCCEEeCCCCccccccchhhc
Q 037951 311 GFMNSLANCSKLQVLSLGGNQFRGALPHSIANLSSQLQILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSIPKEMG 390 (627)
Q Consensus 311 ~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~ 390 (627)
.+..+++|++|++++|.+++ +|.. .++|++|++++|.+. .+|. +..+++|+.|++++|++++ +|..
T Consensus 190 ----~~~~l~~L~~L~l~~N~l~~-l~~~----~~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~l~~N~l~~-l~~~-- 255 (454)
T 1jl5_A 190 ----ELQNLPFLTAIYADNNSLKK-LPDL----PLSLESIVAGNNILE-ELPE-LQNLPFLTTIYADNNLLKT-LPDL-- 255 (454)
T ss_dssp ----CCTTCTTCCEEECCSSCCSS-CCCC----CTTCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSCCSS-CCSC--
T ss_pred ----cccCCCCCCEEECCCCcCCc-CCCC----cCcccEEECcCCcCC-cccc-cCCCCCCCEEECCCCcCCc-cccc--
Confidence 24555666666666666553 2221 126777777777776 4553 6677777778877777764 3432
Q ss_pred CCCCCcEeeccCCcccccCChhhhCCCCCCEEEccCCccccccChhhcCCCCCCEEECcCCcCcccCCcccccc-ccCcc
Q 037951 391 KLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLGDNNLSGVIPSSLGNLERLAILEMFANELSGTIPGDIFNI-SSLSV 469 (627)
Q Consensus 391 ~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~-~~ll~ 469 (627)
+++|+.|++++|++.+ +|.. +++|++|++++|.+++. +. ..++|+.|++++|.+.+ ++ .. .++ +
T Consensus 256 -~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l-~~---~~~~L~~L~l~~N~l~~-i~----~~~~~L-~ 320 (454)
T 1jl5_A 256 -PPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSGL-SE---LPPNLYYLNASSNEIRS-LC----DLPPSL-E 320 (454)
T ss_dssp -CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSEE-SC---CCTTCCEEECCSSCCSE-EC----CCCTTC-C
T ss_pred -ccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCcc-cC---cCCcCCEEECcCCcCCc-cc----CCcCcC-C
Confidence 3677888888887774 4432 36788888888887752 21 12578888888887763 22 22 244 7
Q ss_pred EEEccCCccccCCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEECCCCcccc--cCChhccCCCCCCEEECCC
Q 037951 470 SLDLAENHFVGSIPPRIGNLKALRCFDVSNNDLSGEIPSELGLCSSLEEIYLAENFFNG--FIPSFFRTSRGIRKVDLSR 547 (627)
Q Consensus 470 ~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~--~~~~~l~~l~~L~~L~ls~ 547 (627)
+|++++|++.+ +|.. +++|++|++++|+++ .+|. .+++|++|++++|.+++ .+|..+. .| +.
T Consensus 321 ~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~------~L--~~ 384 (454)
T 1jl5_A 321 ELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVE------DL--RM 384 (454)
T ss_dssp EEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCC------EE--EC
T ss_pred EEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHHHH------hh--hh
Confidence 88888888875 4443 478888888888887 5665 46788888888888887 4555443 22 34
Q ss_pred CcCccccchhcccCcCCeeeCcCCcccc--cCCCCCccCCCCccccccCCCC
Q 037951 548 NNFFGQIPIFLEALSLEYLNLSFNDFEG--RLPTRGIFANASAISVGGCNRL 597 (627)
Q Consensus 548 n~l~~~~p~~~~~~~L~~L~ls~n~l~~--~~p~~~~~~~l~~l~~~~n~~l 597 (627)
|.+.+.+|... ..|++|++++|++++ .+| .+++.+.+.+|...
T Consensus 385 n~~~~~i~~~~--~~L~~L~ls~N~l~~~~~iP-----~sl~~L~~~~~~~~ 429 (454)
T 1jl5_A 385 NSHLAEVPELP--QNLKQLHVETNPLREFPDIP-----ESVEDLRMNSERVV 429 (454)
T ss_dssp CC--------------------------------------------------
T ss_pred ccccccccccc--CcCCEEECCCCcCCccccch-----hhHhheeCcCcccC
Confidence 56666666531 238888888888876 343 45667777776533
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-38 Score=325.82 Aligned_cols=411 Identities=20% Similarity=0.240 Sum_probs=260.6
Q ss_pred CCCCCCEEeCCCCcCcccCCccccCCCCCCEEEccCccccccCCccccCCCCCCeeeCCCCCCCCCCCCCCCCCCCCCEE
Q 037951 95 RLRRLETLLLSDNSLVGKIPANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTGGIPPFLGNLTSLEVV 174 (627)
Q Consensus 95 ~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 174 (627)
+.++|++|++++|.+ +.+|.+++++++|++|++++|.+.+..|..++++.+|+.+++.+|.. .++++|
T Consensus 9 ~~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~-----------~~l~~L 76 (454)
T 1jl5_A 9 SNTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD-----------RQAHEL 76 (454)
T ss_dssp --------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHH-----------HTCSEE
T ss_pred ccccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhc-----------cCCCEE
Confidence 357888888888888 57888888888888888888888878888888888887777766642 457889
Q ss_pred ECCCCCCCCCCCCccCCCCCccEEEeeCccccccCCccccCCCCCcEEEeecccCccCCChhhhhcCCCCceeccCCccc
Q 037951 175 SLAGNPFGGNIPDSLGQLKELKTLGIGGNNLSGSIPPSIYNLSFLVIFSVSENQMHGSLPPSLGLYFPNLKLFQTNENFF 254 (627)
Q Consensus 175 ~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~~~~ 254 (627)
++++|.+++ +|.. .++|++|++++|.+++ +|.. .++|+.|++++|.+.+
T Consensus 77 ~l~~~~l~~-lp~~---~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~----------------------- 125 (454)
T 1jl5_A 77 ELNNLGLSS-LPEL---PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKA----------------------- 125 (454)
T ss_dssp ECTTSCCSC-CCSC---CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-----------------------
T ss_pred EecCCcccc-CCCC---cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCc-----------------------
Confidence 999988885 3432 3678888888887774 4532 2556666666665542
Q ss_pred cccCCccccCCCCCcEeecccccccccCccCcCCCCCcCEEeccCccCCCCCCCCccccccCCCCCcccEEEccCccccc
Q 037951 255 SGSIPISLSNASKLEYVEIASNSFFGKLSVNFGGMKNLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRG 334 (627)
Q Consensus 255 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~ 334 (627)
++.. .++|++|++++|.+.+ +| .++.+++|++|++++|.+++++. . ..+|++|++++|++++
T Consensus 126 ---l~~~---~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~lp~-------~---~~~L~~L~L~~n~l~~ 187 (454)
T 1jl5_A 126 ---LSDL---PPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKKLPD-------L---PPSLEFIAAGNNQLEE 187 (454)
T ss_dssp ---CCSC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSCCCC-------C---CTTCCEEECCSSCCSS
T ss_pred ---ccCC---CCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcccCC-------C---cccccEEECcCCcCCc
Confidence 1111 1689999999999887 55 58999999999999999887432 1 2489999999999985
Q ss_pred ccchhHHhccccccEEEeecccccccCcccccCCCCCCEEeCCCCccccccchhhcCCCCCcEeeccCCcccccCChhhh
Q 037951 335 ALPHSIANLSSQLQILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLG 414 (627)
Q Consensus 335 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~ 414 (627)
+| .+..+. +|++|++++|.+++ +|.. .++|+.|++++|.++ .+|. +..+++|+.|++++|++++ +|..
T Consensus 188 -l~-~~~~l~-~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~l~~N~l~~-l~~~-- 255 (454)
T 1jl5_A 188 -LP-ELQNLP-FLTAIYADNNSLKK-LPDL---PLSLESIVAGNNILE-ELPE-LQNLPFLTTIYADNNLLKT-LPDL-- 255 (454)
T ss_dssp -CC-CCTTCT-TCCEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSCCSS-CCSC--
T ss_pred -Cc-cccCCC-CCCEEECCCCcCCc-CCCC---cCcccEEECcCCcCC-cccc-cCCCCCCCEEECCCCcCCc-cccc--
Confidence 55 466666 89999999999885 4432 258999999999988 5664 8889999999999999884 4432
Q ss_pred CCCCCCEEEccCCccccccChhhcCCCCCCEEECcCCcCcccCCccccccccCccEEEccCCccccCCCccccCC-CCCC
Q 037951 415 NLSSLYEIFLGDNNLSGVIPSSLGNLERLAILEMFANELSGTIPGDIFNISSLSVSLDLAENHFVGSIPPRIGNL-KALR 493 (627)
Q Consensus 415 ~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~ll~~L~l~~n~l~~~~~~~l~~l-~~L~ 493 (627)
+++|++|++++|.+++ +|.. +++|+.|++++|.+.+ +|.. ...+ ++|++++|++.+. ..+ ++|+
T Consensus 256 -~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~-l~~~---~~~L-~~L~l~~N~l~~i-----~~~~~~L~ 320 (454)
T 1jl5_A 256 -PPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSG-LSEL---PPNL-YYLNASSNEIRSL-----CDLPPSLE 320 (454)
T ss_dssp -CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSE-ESCC---CTTC-CEEECCSSCCSEE-----CCCCTTCC
T ss_pred -ccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCc-ccCc---CCcC-CEEECcCCcCCcc-----cCCcCcCC
Confidence 4789999999999885 4543 4789999999998875 2211 1345 8899999988752 223 5899
Q ss_pred EEEccCCcccccCCccccCCCCCCEEECCCCcccccCChhccCCCCCCEEECCCCcCcc--ccchhcccCcCCeeeCcCC
Q 037951 494 CFDVSNNDLSGEIPSELGLCSSLEEIYLAENFFNGFIPSFFRTSRGIRKVDLSRNNFFG--QIPIFLEALSLEYLNLSFN 571 (627)
Q Consensus 494 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~ls~n~l~~--~~p~~~~~~~L~~L~ls~n 571 (627)
+|++++|++++ +|.. +++|++|++++|.++. +|. .+++|++|++++|++.+ .+|..+. +++.|
T Consensus 321 ~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~~-lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~-------~L~~n 385 (454)
T 1jl5_A 321 ELNVSNNKLIE-LPAL---PPRLERLIASFNHLAE-VPE---LPQNLKQLHVEYNPLREFPDIPESVE-------DLRMN 385 (454)
T ss_dssp EEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSSCCCCCTTCC-------EEECC
T ss_pred EEECCCCcccc-cccc---CCcCCEEECCCCcccc-ccc---hhhhccEEECCCCCCCcCCCChHHHH-------hhhhc
Confidence 99999999984 6654 5789999999999885 555 46889999999999987 5665433 23457
Q ss_pred cccccCCCCCccCCCCccccccCCCCc-ccCC----CCCCCCCC
Q 037951 572 DFEGRLPTRGIFANASAISVGGCNRLC-GGIH----ELQLPKCP 610 (627)
Q Consensus 572 ~l~~~~p~~~~~~~l~~l~~~~n~~l~-~~~~----~l~i~~c~ 610 (627)
.+.+.+|.. +++|+.+++.+|+... +.+| .|.+..|.
T Consensus 386 ~~~~~i~~~--~~~L~~L~ls~N~l~~~~~iP~sl~~L~~~~~~ 427 (454)
T 1jl5_A 386 SHLAEVPEL--PQNLKQLHVETNPLREFPDIPESVEDLRMNSER 427 (454)
T ss_dssp C-------------------------------------------
T ss_pred ccccccccc--cCcCCEEECCCCcCCccccchhhHhheeCcCcc
Confidence 777888763 6899999999997442 2444 35555553
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-37 Score=308.89 Aligned_cols=297 Identities=26% Similarity=0.451 Sum_probs=262.5
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCC--cccceeecCCCCcceecccccCCCCCCCEEECCCCCCcc--
Q 037951 12 AAFEEGDLAALQAFKSMISHDPQGILNSWNDSRHFCE--WEGITCDLRSKALSGLLSPQIGNLSFLREINLMNNTIQG-- 87 (627)
Q Consensus 12 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~w~~~~~~c~--~~~~~c~l~~~~l~~~~~~~l~~l~~L~~L~Ls~~~~~~-- 87 (627)
+.|.++|++||.+||.++. +|. .+.+|....++|. |.||.|+-.. ...++++|+++++.+.+
T Consensus 1 ~~c~~~~~~aL~~~k~~~~-~~~-~l~~W~~~~~~C~~~w~gv~C~~~~------------~~~~l~~L~L~~~~l~~~~ 66 (313)
T 1ogq_A 1 ELCNPQDKQALLQIKKDLG-NPT-TLSSWLPTTDCCNRTWLGVLCDTDT------------QTYRVNNLDLSGLNLPKPY 66 (313)
T ss_dssp CCSCHHHHHHHHHHHHHTT-CCG-GGTTCCTTSCTTTTCSTTEEECCSS------------SCCCEEEEEEECCCCSSCE
T ss_pred CCCCHHHHHHHHHHHHhcC-Ccc-cccCCCCCCCCCcCCCcceEeCCCC------------CCceEEEEECCCCCccCCc
Confidence 3588999999999999995 665 7899988788998 9999995321 12478999999999998
Q ss_pred cCCcccCCCCCCCEEeCCC-CcCcccCCccccCCCCCCEEEccCccccccCCccccCCCCCCeeeCCCCCCCCCCCCCCC
Q 037951 88 EIPLEFGRLRRLETLLLSD-NSLVGKIPANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTGGIPPFLG 166 (627)
Q Consensus 88 ~~~~~~~~l~~L~~L~L~~-n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~ 166 (627)
.+|..|.++++|++|++++ |.+.+.+|..|+++++|++|++++|.+++..|..+.++++|++|++++|.+++.+|..+.
T Consensus 67 ~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 146 (313)
T 1ogq_A 67 PIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS 146 (313)
T ss_dssp ECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGG
T ss_pred ccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHh
Confidence 8899999999999999995 889989999999999999999999999988999999999999999999999988999999
Q ss_pred CCCCCCEEECCCCCCCCCCCCccCCCC-CccEEEeeCccccccCCccccCCCCCcEEEeecccCccCCChhhhhcCCCCc
Q 037951 167 NLTSLEVVSLAGNPFGGNIPDSLGQLK-ELKTLGIGGNNLSGSIPPSIYNLSFLVIFSVSENQMHGSLPPSLGLYFPNLK 245 (627)
Q Consensus 167 ~l~~L~~L~L~~n~~~~~~~~~l~~l~-~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~ 245 (627)
++++|++|++++|.+++.+|..+..++ +|++|++++|.+++.+|..+..++ |+.|++++|.+.+..|..+.. +++|+
T Consensus 147 ~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~-l~~L~ 224 (313)
T 1ogq_A 147 SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGS-DKNTQ 224 (313)
T ss_dssp GCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCT-TSCCS
T ss_pred cCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhc-CCCCC
Confidence 999999999999999988899999997 999999999999989999999887 999999999999877766655 89999
Q ss_pred eeccCCccccccCCccccCCCCCcEeecccccccccCccCcCCCCCcCEEeccCccCCCCCCCCccccccCCCCCcccEE
Q 037951 246 LFQTNENFFSGSIPISLSNASKLEYVEIASNSFFGKLSVNFGGMKNLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVL 325 (627)
Q Consensus 246 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L 325 (627)
.|++++|.+++..+. +..+++|++|++++|.+.+..|..+..+++|++|++++|.+++. ++. ...+++|+.+
T Consensus 225 ~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~------ip~-~~~l~~L~~l 296 (313)
T 1ogq_A 225 KIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGE------IPQ-GGNLQRFDVS 296 (313)
T ss_dssp EEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEE------CCC-STTGGGSCGG
T ss_pred EEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCccccc------CCC-CccccccChH
Confidence 999999999877665 77889999999999999988999999999999999999998862 233 3678899999
Q ss_pred EccCccc
Q 037951 326 SLGGNQF 332 (627)
Q Consensus 326 ~l~~n~~ 332 (627)
++++|..
T Consensus 297 ~l~~N~~ 303 (313)
T 1ogq_A 297 AYANNKC 303 (313)
T ss_dssp GTCSSSE
T ss_pred HhcCCCC
Confidence 9999973
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-35 Score=309.92 Aligned_cols=360 Identities=19% Similarity=0.220 Sum_probs=263.1
Q ss_pred ccccCCCCCCCEEECCCCCCcccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEEccCccccccCCccccCCC
Q 037951 66 SPQIGNLSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLTVLVLGNNKLVGSIPFEFVSLY 145 (627)
Q Consensus 66 ~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~ 145 (627)
+..+.++++|++|++++|.+++ +| .+..+++|++|++++|.+++. | ++.+++|++|++++|.+++. + ++.++
T Consensus 35 ~~~~~~l~~L~~L~Ls~n~l~~-~~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~ 106 (457)
T 3bz5_A 35 TISEEQLATLTSLDCHNSSITD-MT-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLT 106 (457)
T ss_dssp EEEHHHHTTCCEEECCSSCCCC-CT-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCT
T ss_pred ccChhHcCCCCEEEccCCCccc-Ch-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCC
Confidence 3456778899999999999985 45 689999999999999999864 4 88999999999999999854 3 88999
Q ss_pred CCCeeeCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCccCCCCCccEEEeeCccccccCCccccCCCCCcEEEee
Q 037951 146 KLKQLALPMNNLTGGIPPFLGNLTSLEVVSLAGNPFGGNIPDSLGQLKELKTLGIGGNNLSGSIPPSIYNLSFLVIFSVS 225 (627)
Q Consensus 146 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~ 225 (627)
+|++|++++|.+++ ++ ++++++|++|++++|.+++. .+..+++|++|++++|...+.+ .+..+++|+.|+++
T Consensus 107 ~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls 178 (457)
T 3bz5_A 107 KLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCS 178 (457)
T ss_dssp TCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECC
T ss_pred cCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECC
Confidence 99999999999986 33 88999999999999999864 3788899999999999655454 47788999999999
Q ss_pred cccCccCCChhhhhcCCCCceeccCCccccccCCccccCCCCCcEeecccccccccCccCcCCCCCcCEEeccCccCCCC
Q 037951 226 ENQMHGSLPPSLGLYFPNLKLFQTNENFFSGSIPISLSNASKLEYVEIASNSFFGKLSVNFGGMKNLSYLILEYNNLGSG 305 (627)
Q Consensus 226 ~n~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~ 305 (627)
+|.+++ +| + ..+++|+.|++++|.+++. .+..+++|+.|++++|++.+ +| ++.+++|++|++++|.+++.
T Consensus 179 ~n~l~~-l~--l-~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~ 248 (457)
T 3bz5_A 179 FNKITE-LD--V-SQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTEL 248 (457)
T ss_dssp SSCCCC-CC--C-TTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCC
T ss_pred CCccce-ec--c-ccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCc
Confidence 998885 44 2 2377888888888887764 36677888888888888776 33 67777888888888877763
Q ss_pred CCCCccccccCCCCCcccEEEccCcccccccchhHHhccccccEEEeecccccccCcccccCCCCCCEEeCCCCcccccc
Q 037951 306 ESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLSSQLQILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSI 385 (627)
Q Consensus 306 ~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 385 (627)
+ +..+++|+.|+++++ +|+.|++++|.+.+.+| +..+++|+.|++++|...+.+
T Consensus 249 ~---------~~~l~~L~~L~l~~n---------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l 302 (457)
T 3bz5_A 249 D---------VSTLSKLTTLHCIQT---------------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLL 302 (457)
T ss_dssp C---------CTTCTTCCEEECTTC---------------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEE
T ss_pred C---------HHHCCCCCEEeccCC---------------CCCEEECCCCccCCccc--ccccccCCEEECCCCccccee
Confidence 2 345667777777654 45666777777665555 456677777777777766555
Q ss_pred chhhcCCCCCcEeeccCCcccccCChhhhCCCCCCEEEccCCccccccChhhcCCCCCCEEECcCCcCcccCCccccccc
Q 037951 386 PKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLGDNNLSGVIPSSLGNLERLAILEMFANELSGTIPGDIFNIS 465 (627)
Q Consensus 386 ~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~ 465 (627)
|. ..++|+.|++++| ++|++|++++|++++. + +..+++|+.|++++|++.+ + +
T Consensus 303 ~~---~~~~L~~L~l~~~-------------~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~-l-------~ 355 (457)
T 3bz5_A 303 DC---QAAGITELDLSQN-------------PKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQD-F-------S 355 (457)
T ss_dssp EC---TTCCCSCCCCTTC-------------TTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCB-C-------T
T ss_pred cc---CCCcceEechhhc-------------ccCCEEECCCCccccc-c--cccCCcCcEEECCCCCCCC-c-------c
Confidence 53 3345555555443 5677777777777753 2 6677777777777777763 1 2
Q ss_pred cCccEEEccCCccccCCCccccCCCCCCEEEccCCcccccCCccc
Q 037951 466 SLSVSLDLAENHFVGSIPPRIGNLKALRCFDVSNNDLSGEIPSEL 510 (627)
Q Consensus 466 ~ll~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l 510 (627)
.+ ..|++++|.+.|. .++..|+.+++++|+++|.+|..+
T Consensus 356 ~L-~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~~ 394 (457)
T 3bz5_A 356 SV-GKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPDL 394 (457)
T ss_dssp TG-GGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTTC
T ss_pred cc-ccccccCCcEEec-----ceeeecCccccccCcEEEEcChhH
Confidence 23 4455666666553 233445556666666666666543
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-35 Score=306.20 Aligned_cols=346 Identities=26% Similarity=0.386 Sum_probs=199.4
Q ss_pred CCCCCCEEeCCCCcCcccCCccccCCCCCCEEEccCccccccCCccccCCCCCCeeeCCCCCCCCCCCCCCCCCCCCCEE
Q 037951 95 RLRRLETLLLSDNSLVGKIPANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTGGIPPFLGNLTSLEVV 174 (627)
Q Consensus 95 ~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 174 (627)
.+++++.|+++++.+. .+| .+..+++|++|++++|.+.+..+ +..+++|++|++++|.+.+..+ +.++++|++|
T Consensus 44 ~l~~l~~L~l~~~~i~-~l~-~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L 117 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIK-SID-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGL 117 (466)
T ss_dssp HHHTCCEEECCSSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEE
T ss_pred HhccccEEecCCCCCc-cCc-chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEE
Confidence 4678899999998887 455 47888899999999998885443 8888888999988888885544 8888888888
Q ss_pred ECCCCCCCCCCCCccCCCCCccEEEeeCccccccCCccccCCCCCcEEEeecccCccCCChhhhhcCCCCceeccCCccc
Q 037951 175 SLAGNPFGGNIPDSLGQLKELKTLGIGGNNLSGSIPPSIYNLSFLVIFSVSENQMHGSLPPSLGLYFPNLKLFQTNENFF 254 (627)
Q Consensus 175 ~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~~~~ 254 (627)
++++|.+.+.. . +..+++|++|++++|.+.+ ++ .+..+++|+.|++++ .+.+
T Consensus 118 ~L~~n~l~~~~-~-~~~l~~L~~L~l~~n~l~~-~~-~~~~l~~L~~L~l~~-~~~~----------------------- 169 (466)
T 1o6v_A 118 TLFNNQITDID-P-LKNLTNLNRLELSSNTISD-IS-ALSGLTSLQQLSFGN-QVTD----------------------- 169 (466)
T ss_dssp ECCSSCCCCCG-G-GTTCTTCSEEEEEEEEECC-CG-GGTTCTTCSEEEEEE-SCCC-----------------------
T ss_pred ECCCCCCCCCh-H-HcCCCCCCEEECCCCccCC-Ch-hhccCCcccEeecCC-cccC-----------------------
Confidence 88888887542 2 7778888888888887763 22 366666666666542 2210
Q ss_pred cccCCccccCCCCCcEeecccccccccCccCcCCCCCcCEEeccCccCCCCCCCCccccccCCCCCcccEEEccCccccc
Q 037951 255 SGSIPISLSNASKLEYVEIASNSFFGKLSVNFGGMKNLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRG 334 (627)
Q Consensus 255 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~ 334 (627)
. ..+..+++|+.|++++|.+.+.. .+..+++|++|++++|.+.+.. .+..++
T Consensus 170 ---~-~~~~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~--------~~~~l~-------------- 221 (466)
T 1o6v_A 170 ---L-KPLANLTTLERLDISSNKVSDIS--VLAKLTNLESLIATNNQISDIT--------PLGILT-------------- 221 (466)
T ss_dssp ---C-GGGTTCTTCCEEECCSSCCCCCG--GGGGCTTCSEEECCSSCCCCCG--------GGGGCT--------------
T ss_pred ---c-hhhccCCCCCEEECcCCcCCCCh--hhccCCCCCEEEecCCcccccc--------cccccC--------------
Confidence 0 01344555555555555543321 1344444444444444443311 122233
Q ss_pred ccchhHHhccccccEEEeecccccccCcccccCCCCCCEEeCCCCccccccchhhcCCCCCcEeeccCCcccccCChhhh
Q 037951 335 ALPHSIANLSSQLQILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLG 414 (627)
Q Consensus 335 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~ 414 (627)
+|+.|++++|.+.+. ..+..+++|+.|++++|.+++..+ +..+++|+.|++++|.+.+..+ +.
T Consensus 222 -----------~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~ 284 (466)
T 1o6v_A 222 -----------NLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LA 284 (466)
T ss_dssp -----------TCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GT
T ss_pred -----------CCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--cc
Confidence 444444444444321 134455555555555555553322 4555556666666655553322 45
Q ss_pred CCCCCCEEEccCCccccccChhhcCCCCCCEEECcCCcCcccCCccccccccCccEEEccCCccccCCCccccCCCCCCE
Q 037951 415 NLSSLYEIFLGDNNLSGVIPSSLGNLERLAILEMFANELSGTIPGDIFNISSLSVSLDLAENHFVGSIPPRIGNLKALRC 494 (627)
Q Consensus 415 ~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~ll~~L~l~~n~l~~~~~~~l~~l~~L~~ 494 (627)
.+++|++|++++|.+++..+ +..+++|+.|++++|.+.+..| +..++.+ ++|++++|.+.+. ..+.++++|++
T Consensus 285 ~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L-~~L~l~~n~l~~~--~~l~~l~~L~~ 357 (466)
T 1o6v_A 285 GLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKL-QRLFFYNNKVSDV--SSLANLTNINW 357 (466)
T ss_dssp TCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTC-CEEECCSSCCCCC--GGGTTCTTCCE
T ss_pred CCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccC-CEeECCCCccCCc--hhhccCCCCCE
Confidence 55556666666655554322 4555555555555555543322 3344444 4555555544432 23455555555
Q ss_pred EEccCCcccccCCccccCCCCCCEEECCCCcccc
Q 037951 495 FDVSNNDLSGEIPSELGLCSSLEEIYLAENFFNG 528 (627)
Q Consensus 495 L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~ 528 (627)
|++++|++++..| +..+++|+.|++++|.+++
T Consensus 358 L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 358 LSAGHNQISDLTP--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp EECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred EeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence 5555555554433 4555555555555555554
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-35 Score=313.25 Aligned_cols=347 Identities=19% Similarity=0.164 Sum_probs=202.7
Q ss_pred cEEEeecccCccCCChhhhhcCCCCceeccCCccccccCCccccCCCCCcEeecccccccccCccCcCCCCCcCEEeccC
Q 037951 220 VIFSVSENQMHGSLPPSLGLYFPNLKLFQTNENFFSGSIPISLSNASKLEYVEIASNSFFGKLSVNFGGMKNLSYLILEY 299 (627)
Q Consensus 220 ~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 299 (627)
+.++.+++.+. .+|..+ .++++.|++++|.+++..+..+..+++|++|++++|.+.+..+..|.++++|++|++++
T Consensus 14 ~~v~c~~~~l~-~ip~~~---~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~ 89 (477)
T 2id5_A 14 RAVLCHRKRFV-AVPEGI---PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS 89 (477)
T ss_dssp TEEECCSCCCS-SCCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcC-cCCCCC---CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCC
Confidence 35566665555 444433 34566666666666655555566666666666666666555555566666666666666
Q ss_pred ccCCCCCCCCccccccCCCCCcccEEEccCcccccccchhHHhccccccEEEeecccccccCcccccCCCCCCEEeCCCC
Q 037951 300 NNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLSSQLQILVLGTNQLYGSIPSGIGNLVNLYSLQTEEN 379 (627)
Q Consensus 300 n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 379 (627)
|.++.+.. ..+.++++|++|++++|++. +..+..+..+++|+.|++++|
T Consensus 90 n~l~~~~~------~~~~~l~~L~~L~Ls~n~i~-------------------------~~~~~~~~~l~~L~~L~l~~n 138 (477)
T 2id5_A 90 NRLKLIPL------GVFTGLSNLTKLDISENKIV-------------------------ILLDYMFQDLYNLKSLEVGDN 138 (477)
T ss_dssp SCCCSCCT------TSSTTCTTCCEEECTTSCCC-------------------------EECTTTTTTCTTCCEEEECCT
T ss_pred CcCCccCc------ccccCCCCCCEEECCCCccc-------------------------cCChhHccccccCCEEECCCC
Confidence 55554322 13444555555555555554 444444555555555555555
Q ss_pred ccccccchhhcCCCCCcEeeccCCcccccCChhhhCCCCCCEEEccCCccccccChhhcCCCCCCEEECcCCcCcccCCc
Q 037951 380 QFTGSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLGDNNLSGVIPSSLGNLERLAILEMFANELSGTIPG 459 (627)
Q Consensus 380 ~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~ 459 (627)
.+++..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|...+.+|.
T Consensus 139 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 218 (477)
T 2id5_A 139 DLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTP 218 (477)
T ss_dssp TCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECT
T ss_pred ccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCc
Confidence 55544455555555556666665555544444455566666666666665555555555666666666666655555555
Q ss_pred cccccccCccEEEccCCccccCCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEECCCCcccccCChhccCCCC
Q 037951 460 DIFNISSLSVSLDLAENHFVGSIPPRIGNLKALRCFDVSNNDLSGEIPSELGLCSSLEEIYLAENFFNGFIPSFFRTSRG 539 (627)
Q Consensus 460 ~~~~~~~ll~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~ 539 (627)
......++ ++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..|..|..+++
T Consensus 219 ~~~~~~~L-~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 297 (477)
T 2id5_A 219 NCLYGLNL-TSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNY 297 (477)
T ss_dssp TTTTTCCC-SEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTT
T ss_pred ccccCccc-cEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCccc
Confidence 55544555 66666666666433345666677777777777776555566667777777777777777666666777777
Q ss_pred CCEEECCCCcCccccchhcccCc-CCeeeCcCCcccccCCCCCccCCCCccccccCCCCcccCC
Q 037951 540 IRKVDLSRNNFFGQIPIFLEALS-LEYLNLSFNDFEGRLPTRGIFANASAISVGGCNRLCGGIH 602 (627)
Q Consensus 540 L~~L~ls~n~l~~~~p~~~~~~~-L~~L~ls~n~l~~~~p~~~~~~~l~~l~~~~n~~l~~~~~ 602 (627)
|+.|++++|.+.+..+..+..++ |++|++++|++....+....+.....+.+.++...|+.++
T Consensus 298 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~~~~~~~~~~~~~~~~~~C~~p~ 361 (477)
T 2id5_A 298 LRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLLWVFRRRWRLNFNRQQPTCATPE 361 (477)
T ss_dssp CCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGGHHHHTTTTSSCCTTCCCBEEESG
T ss_pred CCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccchHhHHhhhhccccCccCceeCCch
Confidence 77777777777655555555555 7777777777665433222233334455566666665543
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-35 Score=305.31 Aligned_cols=362 Identities=19% Similarity=0.169 Sum_probs=208.1
Q ss_pred cccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEEccCccccccCCccccCCCCCCeeeCCCCCCCCCCCCCC
Q 037951 86 QGEIPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTGGIPPFL 165 (627)
Q Consensus 86 ~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l 165 (627)
.+..+..++++++|++|++++|.+++ +| .++.+++|++|++++|++++. + ++.+++|++|++++|.+++. + +
T Consensus 31 ~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~ 102 (457)
T 3bz5_A 31 QATDTISEEQLATLTSLDCHNSSITD-MT-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--V 102 (457)
T ss_dssp CTTSEEEHHHHTTCCEEECCSSCCCC-CT-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--C
T ss_pred CcccccChhHcCCCCEEEccCCCccc-Ch-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--c
Confidence 33445567888999999999999985 45 688999999999999998853 3 88889999999999998864 3 7
Q ss_pred CCCCCCCEEECCCCCCCCCCCCccCCCCCccEEEeeCccccccCCccccCCCCCcEEEeecccCccCCChhhhhcCCCCc
Q 037951 166 GNLTSLEVVSLAGNPFGGNIPDSLGQLKELKTLGIGGNNLSGSIPPSIYNLSFLVIFSVSENQMHGSLPPSLGLYFPNLK 245 (627)
Q Consensus 166 ~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~ 245 (627)
+++++|++|++++|.+++. + +..+++|++|++++|.+++. .++.+++|+.|++++|...+.++
T Consensus 103 ~~l~~L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~~----------- 165 (457)
T 3bz5_A 103 TPLTKLTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKLD----------- 165 (457)
T ss_dssp TTCTTCCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCCC-----------
T ss_pred CCCCcCCEEECCCCcCCee-c--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCcccccc-----------
Confidence 8889999999999988863 3 78888888888888888753 26677777777777775443331
Q ss_pred eeccCCccccccCCccccCCCCCcEeecccccccccCccCcCCCCCcCEEeccCccCCCCCCCCccccccCCCCCcccEE
Q 037951 246 LFQTNENFFSGSIPISLSNASKLEYVEIASNSFFGKLSVNFGGMKNLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVL 325 (627)
Q Consensus 246 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L 325 (627)
+..+++|+.|++++|.+.+. + +..+++|+.|++++|.+++. .+..+++|+.|
T Consensus 166 ----------------~~~l~~L~~L~ls~n~l~~l-~--l~~l~~L~~L~l~~N~l~~~---------~l~~l~~L~~L 217 (457)
T 3bz5_A 166 ----------------VTPQTQLTTLDCSFNKITEL-D--VSQNKLLNRLNCDTNNITKL---------DLNQNIQLTFL 217 (457)
T ss_dssp ----------------CTTCTTCCEEECCSSCCCCC-C--CTTCTTCCEEECCSSCCSCC---------CCTTCTTCSEE
T ss_pred ----------------cccCCcCCEEECCCCcccee-c--cccCCCCCEEECcCCcCCee---------ccccCCCCCEE
Confidence 23444555555555554442 1 44555555555555555442 13344555555
Q ss_pred EccCcccccccchhHHhccccccEEEeecccccccCcccccCCCCCCEEeCCCCccccccchhhcCCCCCcEeeccCCcc
Q 037951 326 SLGGNQFRGALPHSIANLSSQLQILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHF 405 (627)
Q Consensus 326 ~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~ 405 (627)
++++|++++ +| +..++ +|+.|++++|++++.. +..+++|+.|++++| +|+.|++++|.+
T Consensus 218 ~Ls~N~l~~-ip--~~~l~-~L~~L~l~~N~l~~~~---~~~l~~L~~L~l~~n--------------~L~~L~l~~n~~ 276 (457)
T 3bz5_A 218 DCSSNKLTE-ID--VTPLT-QLTYFDCSVNPLTELD---VSTLSKLTTLHCIQT--------------DLLEIDLTHNTQ 276 (457)
T ss_dssp ECCSSCCSC-CC--CTTCT-TCSEEECCSSCCSCCC---CTTCTTCCEEECTTC--------------CCSCCCCTTCTT
T ss_pred ECcCCcccc-cC--ccccC-CCCEEEeeCCcCCCcC---HHHCCCCCEEeccCC--------------CCCEEECCCCcc
Confidence 555555553 23 22332 4555555555554321 233444555544432 234445555554
Q ss_pred cccCChhhhCCCCCCEEEccCCccccccChhhcCCCCCCEEECcCCcCcccCCccccccccCccEEEccCCccccCCCcc
Q 037951 406 SGEIPSTLGNLSSLYEIFLGDNNLSGVIPSSLGNLERLAILEMFANELSGTIPGDIFNISSLSVSLDLAENHFVGSIPPR 485 (627)
Q Consensus 406 ~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~ll~~L~l~~n~l~~~~~~~ 485 (627)
.+.+| ++.+++|+.|++++|...+.+|. ..++|+.|++++| +.+ ++|++++|++.+. +
T Consensus 277 ~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~---~~~~L~~L~l~~~-------------~~L-~~L~L~~N~l~~l-~-- 334 (457)
T 3bz5_A 277 LIYFQ--AEGCRKIKELDVTHNTQLYLLDC---QAAGITELDLSQN-------------PKL-VYLYLNNTELTEL-D-- 334 (457)
T ss_dssp CCEEE--CTTCTTCCCCCCTTCTTCCEEEC---TTCCCSCCCCTTC-------------TTC-CEEECTTCCCSCC-C--
T ss_pred CCccc--ccccccCCEEECCCCcccceecc---CCCcceEechhhc-------------ccC-CEEECCCCccccc-c--
Confidence 44433 23455555555555554444432 2233333333332 223 4455555555442 1
Q ss_pred ccCCCCCCEEEccCCcccccCCccccCCCCCCEEECCCCcccccCChhccCCCCCCEEECCCCcCccccch
Q 037951 486 IGNLKALRCFDVSNNDLSGEIPSELGLCSSLEEIYLAENFFNGFIPSFFRTSRGIRKVDLSRNNFFGQIPI 556 (627)
Q Consensus 486 l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~ 556 (627)
+.++++|+.|++++|++++ ++.|+.|++++|.+.+. ..+..|+.+++++|.++|.+|.
T Consensus 335 l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~ 392 (457)
T 3bz5_A 335 VSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSP 392 (457)
T ss_dssp CTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCT
T ss_pred cccCCcCcEEECCCCCCCC--------ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcCh
Confidence 4455555555555555542 12334444455544443 1223344445555555555443
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-34 Score=302.21 Aligned_cols=212 Identities=25% Similarity=0.335 Sum_probs=152.1
Q ss_pred CCCCCCEEECCCCCCcccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEEccCccccccCCccccCCCCCCee
Q 037951 71 NLSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQL 150 (627)
Q Consensus 71 ~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L 150 (627)
.+++++.|+++++.+. .+| .+..+++|++|++++|.+++. +. +.++++|++|++++|.+.+..+ +.++++|++|
T Consensus 44 ~l~~l~~L~l~~~~i~-~l~-~~~~l~~L~~L~Ls~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L 117 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIK-SID-GVEYLNNLTQINFSNNQLTDI-TP-LKNLTKLVDILMNNNQIADITP--LANLTNLTGL 117 (466)
T ss_dssp HHHTCCEEECCSSCCC-CCT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEE
T ss_pred HhccccEEecCCCCCc-cCc-chhhhcCCCEEECCCCccCCc-hh-hhccccCCEEECCCCccccChh--hcCCCCCCEE
Confidence 4678999999999997 455 488899999999999999954 44 9999999999999999985544 9999999999
Q ss_pred eCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCccCCCCCccEEEeeCccccccCCccccCCCCCcEEEeecccCc
Q 037951 151 ALPMNNLTGGIPPFLGNLTSLEVVSLAGNPFGGNIPDSLGQLKELKTLGIGGNNLSGSIPPSIYNLSFLVIFSVSENQMH 230 (627)
Q Consensus 151 ~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~ 230 (627)
++++|.+++..+ +.++++|++|++++|.+.+. + .+..+++|++|+++ +.+.+. ..+..+++|+.|++++|.+.
T Consensus 118 ~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~-~~~~l~~L~~L~l~-~~~~~~--~~~~~l~~L~~L~l~~n~l~ 190 (466)
T 1o6v_A 118 TLFNNQITDIDP--LKNLTNLNRLELSSNTISDI-S-ALSGLTSLQQLSFG-NQVTDL--KPLANLTTLERLDISSNKVS 190 (466)
T ss_dssp ECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCC-G-GGTTCTTCSEEEEE-ESCCCC--GGGTTCTTCCEEECCSSCCC
T ss_pred ECCCCCCCCChH--HcCCCCCCEEECCCCccCCC-h-hhccCCcccEeecC-CcccCc--hhhccCCCCCEEECcCCcCC
Confidence 999999986533 89999999999999999853 3 58999999999997 444422 34889999999999999876
Q ss_pred cCCChhhhhcCCCCceeccCCccccccCCccccCCCCCcEeecccccccccCccCcCCCCCcCEEeccCccC
Q 037951 231 GSLPPSLGLYFPNLKLFQTNENFFSGSIPISLSNASKLEYVEIASNSFFGKLSVNFGGMKNLSYLILEYNNL 302 (627)
Q Consensus 231 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l 302 (627)
+. +. + ..+++|++|++++|.+.+..+ +..+++|+.|++++|.+.+. ..+..+++|+.|++++|.+
T Consensus 191 ~~-~~-l-~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l 255 (466)
T 1o6v_A 191 DI-SV-L-AKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQI 255 (466)
T ss_dssp CC-GG-G-GGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCC
T ss_pred CC-hh-h-ccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCcc
Confidence 42 21 2 225555555555555443322 33444444444444444332 1233344444444444443
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-34 Score=295.49 Aligned_cols=344 Identities=19% Similarity=0.184 Sum_probs=195.4
Q ss_pred CCCCCCCCCCCC-cccceeecCCCCccee-----cccccCCCCCCCEEECCCCCCcccCCcccCCCCCCCEEeCCCCcCc
Q 037951 37 LNSWNDSRHFCE-WEGITCDLRSKALSGL-----LSPQIGNLSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLV 110 (627)
Q Consensus 37 ~~~w~~~~~~c~-~~~~~c~l~~~~l~~~-----~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~n~i~ 110 (627)
+++|.....||. |.+..|......+... ....-..++++++|+++++.++...+..|..+++|++|++++|.++
T Consensus 3 ~~~~~~~~~C~~~~~~~~c~~~~~~i~~~~~~~~~~~~~~~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~ 82 (390)
T 3o6n_A 3 VKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE 82 (390)
T ss_dssp ----CCEECBCC------EEEESCEECSSCCCCEESCSSGGGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCC
T ss_pred cCCCCCccceehhhhhhccceeeeeeecccccccccccccccCCceEEEecCCchhhCChhHhcccccCcEEECCCCccc
Confidence 467776655654 5545553333222211 1111223578888888888887544455677888888888888888
Q ss_pred ccCCccccCCCCCCEEEccCccccccCCccccCCCCCCeeeCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCccC
Q 037951 111 GKIPANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTGGIPPFLGNLTSLEVVSLAGNPFGGNIPDSLG 190 (627)
Q Consensus 111 ~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~ 190 (627)
+..+..|.++++|++|++++|.+++..|..++++++|++|++++|.++...+..+.++++|++|++++|.+.+..+..+.
T Consensus 83 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 162 (390)
T 3o6n_A 83 EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQ 162 (390)
T ss_dssp EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTS
T ss_pred ccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhcc
Confidence 76667788888888888888888877777778888888888888888754444567788888888888887766666777
Q ss_pred CCCCccEEEeeCccccccCCccccCCCCCcEEEeecccCccCCChhhhhcCCCCceeccCCccccccCCccccCCCCCcE
Q 037951 191 QLKELKTLGIGGNNLSGSIPPSIYNLSFLVIFSVSENQMHGSLPPSLGLYFPNLKLFQTNENFFSGSIPISLSNASKLEY 270 (627)
Q Consensus 191 ~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 270 (627)
.+++|++|++++|.+++. .+..+++|+.+++++|.+. + +...++|+.
T Consensus 163 ~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~-------------------------~-----~~~~~~L~~ 209 (390)
T 3o6n_A 163 ATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLS-------------------------T-----LAIPIAVEE 209 (390)
T ss_dssp SCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCS-------------------------E-----EECCSSCSE
T ss_pred CCCCCCEEECCCCcCCcc---ccccccccceeeccccccc-------------------------c-----cCCCCcceE
Confidence 777777777777776632 2334455555555554433 1 112234555
Q ss_pred eecccccccccCccCcCCCCCcCEEeccCccCCCCCCCCccccccCCCCCcccEEEccCcccccccchhHHhccccccEE
Q 037951 271 VEIASNSFFGKLSVNFGGMKNLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLSSQLQIL 350 (627)
Q Consensus 271 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L 350 (627)
+++++|.+..... ...++|+.|++++|.+++. ..+..+++|++|++++|.+++..|.
T Consensus 210 L~l~~n~l~~~~~---~~~~~L~~L~l~~n~l~~~--------~~l~~l~~L~~L~Ls~n~l~~~~~~------------ 266 (390)
T 3o6n_A 210 LDASHNSINVVRG---PVNVELTILKLQHNNLTDT--------AWLLNYPGLVEVDLSYNELEKIMYH------------ 266 (390)
T ss_dssp EECCSSCCCEEEC---CCCSSCCEEECCSSCCCCC--------GGGGGCTTCSEEECCSSCCCEEESG------------
T ss_pred EECCCCeeeeccc---cccccccEEECCCCCCccc--------HHHcCCCCccEEECCCCcCCCcChh------------
Confidence 6665555543322 1234556666665555441 2344445555555555555444444
Q ss_pred EeecccccccCcccccCCCCCCEEeCCCCccccccchhhcCCCCCcEeeccCCcccccCChhhhCCCCCCEEEccCCccc
Q 037951 351 VLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLGDNNLS 430 (627)
Q Consensus 351 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~ 430 (627)
.+..+++|+.|++++|++++ ++..+..+++|+.|++++|++. .+|..+..+++|++|++++|+++
T Consensus 267 -------------~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~ 331 (390)
T 3o6n_A 267 -------------PFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV 331 (390)
T ss_dssp -------------GGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCC
T ss_pred -------------HccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCccc
Confidence 44444445555555554442 2333344455555555555554 33334444555555555555554
Q ss_pred cccChhhcCCCCCCEEECcCCcCc
Q 037951 431 GVIPSSLGNLERLAILEMFANELS 454 (627)
Q Consensus 431 ~~~~~~l~~l~~L~~L~l~~n~l~ 454 (627)
.. + +..+++|+.|++++|++.
T Consensus 332 ~~-~--~~~~~~L~~L~l~~N~~~ 352 (390)
T 3o6n_A 332 TL-K--LSTHHTLKNLTLSHNDWD 352 (390)
T ss_dssp CC-C--CCTTCCCSEEECCSSCEE
T ss_pred ee-C--chhhccCCEEEcCCCCcc
Confidence 32 1 344455555555555554
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-34 Score=302.17 Aligned_cols=302 Identities=20% Similarity=0.202 Sum_probs=169.3
Q ss_pred CCCCEEECCCCCCcccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEEccCccccccCCccccCCCCCCeeeC
Q 037951 73 SFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLAL 152 (627)
Q Consensus 73 ~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l 152 (627)
+++++|++++|.+++..+..|.++++|++|+|++|.+++..|..|.++++|++|++++|+++...+..|.++++|++|++
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 111 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDI 111 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEEC
T ss_pred CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEEC
Confidence 46667777777666555666666667777777766666666666666666666666666666444445566666666666
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCccCCCCCccEEEeeCccccccCCccccCCCCCcEEEeecccCccC
Q 037951 153 PMNNLTGGIPPFLGNLTSLEVVSLAGNPFGGNIPDSLGQLKELKTLGIGGNNLSGSIPPSIYNLSFLVIFSVSENQMHGS 232 (627)
Q Consensus 153 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~ 232 (627)
++|.+.+..+..+.++++|++|++++|.+.+..+..|..+++|++|++++|.+++..+..+..+++|+.|++++|.+.
T Consensus 112 s~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~-- 189 (477)
T 2id5_A 112 SENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNIN-- 189 (477)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCC--
T ss_pred CCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCc--
Confidence 666666555555666666666666666665555555555555555555555555333333444444444444444443
Q ss_pred CChhhhhcCCCCceeccCCccccccCCccccCCCCCcEeecccccccccCccCcCCCCCcCEEeccCccCCCCCCCCccc
Q 037951 233 LPPSLGLYFPNLKLFQTNENFFSGSIPISLSNASKLEYVEIASNSFFGKLSVNFGGMKNLSYLILEYNNLGSGESDEMGF 312 (627)
Q Consensus 233 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~ 312 (627)
+..+..+..+++|+.|++++|...+..+.......
T Consensus 190 -----------------------~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~---------------------- 224 (477)
T 2id5_A 190 -----------------------AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGL---------------------- 224 (477)
T ss_dssp -----------------------EECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTC----------------------
T ss_pred -----------------------EeChhhcccCcccceeeCCCCccccccCcccccCc----------------------
Confidence 33333444555555555555544433333322223
Q ss_pred cccCCCCCcccEEEccCcccccccchhHHhccccccEEEeecccccccCcccccCCCCCCEEeCCCCccccccchhhcCC
Q 037951 313 MNSLANCSKLQVLSLGGNQFRGALPHSIANLSSQLQILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSIPKEMGKL 392 (627)
Q Consensus 313 ~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l 392 (627)
+|+.|++++|.+++..+..+..+. +|+.|++++|.+++..+..+..+++|+.|++++|++++..+..+..+
T Consensus 225 --------~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 295 (477)
T 2id5_A 225 --------NLTSLSITHCNLTAVPYLAVRHLV-YLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGL 295 (477)
T ss_dssp --------CCSEEEEESSCCCSCCHHHHTTCT-TCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTC
T ss_pred --------cccEEECcCCcccccCHHHhcCcc-ccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCc
Confidence 444444444444422222333333 45555555555554444455556666666666666665555556666
Q ss_pred CCCcEeeccCCcccccCChhhhCCCCCCEEEccCCccc
Q 037951 393 LNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLGDNNLS 430 (627)
Q Consensus 393 ~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~ 430 (627)
++|+.|++++|++++..+..|..+++|++|++++|++.
T Consensus 296 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 333 (477)
T 2id5_A 296 NYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333 (477)
T ss_dssp TTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEE
T ss_pred ccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCcc
Confidence 66666666666666544445555666666666666654
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-34 Score=308.77 Aligned_cols=350 Identities=18% Similarity=0.167 Sum_probs=189.5
Q ss_pred CCCCCCCCCCCCCCCCCC-cccceeecCCCCccee---cc--cccCCCCCCCEEECCCCCCcccCCcccCCCCCCCEEeC
Q 037951 31 HDPQGILNSWNDSRHFCE-WEGITCDLRSKALSGL---LS--PQIGNLSFLREINLMNNTIQGEIPLEFGRLRRLETLLL 104 (627)
Q Consensus 31 ~~~~~~~~~w~~~~~~c~-~~~~~c~l~~~~l~~~---~~--~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L 104 (627)
++.+..+.+|.....||. |.++.|.+....+... .. ..-..+.+++.++++++.+....+..|..+++|++|+|
T Consensus 3 g~~~~~l~~~~~~~~C~~~~~~~~c~~~~~~i~~~~~~~~~~~~~l~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L 82 (597)
T 3oja_B 3 GQQRYNVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNL 82 (597)
T ss_dssp --------CCCSEECCCCC--CCSEEECSCEECSSCCCCEESCSSGGGCCCSEEEESSCEESEECTHHHHHCCCCSEEEC
T ss_pred CcccccccCCCCCCcCcccCcCceeEecCceecccccccccCcccccCCCceEEEeeCCCCCCcCHHHHccCCCCcEEEC
Confidence 344566788887666654 3333342222222111 11 11123567788888888777555555677788888888
Q ss_pred CCCcCcccCCccccCCCCCCEEEccCccccccCCccccCCCCCCeeeCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCC
Q 037951 105 SDNSLVGKIPANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTGGIPPFLGNLTSLEVVSLAGNPFGGN 184 (627)
Q Consensus 105 ~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~ 184 (627)
++|.+++..|..|+++++|++|++++|.+++..|..|+++++|++|++++|.+++..+..|+++++|++|++++|.+.+.
T Consensus 83 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~ 162 (597)
T 3oja_B 83 NDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERI 162 (597)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBC
T ss_pred CCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCC
Confidence 88888776667778888888888888887776677777777788888877777755555567777777777777777766
Q ss_pred CCCccCCCCCccEEEeeCccccccCCccccCCCCCcEEEeecccCccCCChhhhhcCCCCceeccCCccccccCCccccC
Q 037951 185 IPDSLGQLKELKTLGIGGNNLSGSIPPSIYNLSFLVIFSVSENQMHGSLPPSLGLYFPNLKLFQTNENFFSGSIPISLSN 264 (627)
Q Consensus 185 ~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ 264 (627)
.|..+..+++|++|++++|.+++. .+..+++|+.+++++|.+. + +..
T Consensus 163 ~~~~~~~l~~L~~L~L~~N~l~~~---~~~~l~~L~~L~l~~n~l~-------------------------~-----l~~ 209 (597)
T 3oja_B 163 EDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLS-------------------------T-----LAI 209 (597)
T ss_dssp CTTTTTTCTTCCEEECTTSCCSBC---CGGGCTTCSEEECCSSCCS-------------------------E-----EEC
T ss_pred ChhhhhcCCcCcEEECcCCCCCCc---ChhhhhhhhhhhcccCccc-------------------------c-----ccC
Confidence 666677777777777777766632 1333444555554444433 1 122
Q ss_pred CCCCcEeecccccccccCccCcCCCCCcCEEeccCccCCCCCCCCccccccCCCCCcccEEEccCcccccccchhHHhcc
Q 037951 265 ASKLEYVEIASNSFFGKLSVNFGGMKNLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLS 344 (627)
Q Consensus 265 ~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~ 344 (627)
.++|+.|++++|.+....+.. .++|+.|++++|.+++. ..+..+++|+.|++++|.+++..|..+..+.
T Consensus 210 ~~~L~~L~ls~n~l~~~~~~~---~~~L~~L~L~~n~l~~~--------~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 278 (597)
T 3oja_B 210 PIAVEELDASHNSINVVRGPV---NVELTILKLQHNNLTDT--------AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQ 278 (597)
T ss_dssp CTTCSEEECCSSCCCEEECSC---CSCCCEEECCSSCCCCC--------GGGGGCTTCSEEECCSSCCCEEESGGGTTCS
T ss_pred CchhheeeccCCccccccccc---CCCCCEEECCCCCCCCC--------hhhccCCCCCEEECCCCccCCCCHHHhcCcc
Confidence 334555666555554332221 24555555555555441 2344445555555555555544444444443
Q ss_pred ccccEEEeecccccccCcccccCCCCCCEEeCCCCccccccchhhcCCCCCcEeeccCCcccccCChhhhCCCCCCEEEc
Q 037951 345 SQLQILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFL 424 (627)
Q Consensus 345 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l 424 (627)
+|+.|++++|.+++ +|..+..+++|+.|++++|.++ .+|..+..+++|+.|++++|.+.+. + +..+++|+.|++
T Consensus 279 -~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~--~~~~~~L~~L~l 352 (597)
T 3oja_B 279 -RLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTL 352 (597)
T ss_dssp -SCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEEC
T ss_pred -CCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc-C--hhhcCCCCEEEe
Confidence 44444444444442 2333333444444444444444 2333344444444444444444322 1 233344444444
Q ss_pred cCCccc
Q 037951 425 GDNNLS 430 (627)
Q Consensus 425 ~~n~~~ 430 (627)
++|++.
T Consensus 353 ~~N~~~ 358 (597)
T 3oja_B 353 SHNDWD 358 (597)
T ss_dssp CSSCEE
T ss_pred eCCCCC
Confidence 444443
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-34 Score=283.97 Aligned_cols=253 Identities=30% Similarity=0.454 Sum_probs=218.5
Q ss_pred cccEEEeecccccc--cCcccccCCCCCCEEeCCC-CccccccchhhcCCCCCcEeeccCCcccccCChhhhCCCCCCEE
Q 037951 346 QLQILVLGTNQLYG--SIPSGIGNLVNLYSLQTEE-NQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEI 422 (627)
Q Consensus 346 ~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~-n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L 422 (627)
+++.|++++|.+.+ .+|..+..+++|++|++++ |.+.+.+|..+..+++|++|++++|.+++.+|..+..+++|++|
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 130 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL 130 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEE
Confidence 57777777777776 6777777788888888884 77777778788888888888888888887788888888888888
Q ss_pred EccCCccccccChhhcCCCCCCEEECcCCcCcccCCccccccc-cCccEEEccCCccccCCCccccCCCCCCEEEccCCc
Q 037951 423 FLGDNNLSGVIPSSLGNLERLAILEMFANELSGTIPGDIFNIS-SLSVSLDLAENHFVGSIPPRIGNLKALRCFDVSNND 501 (627)
Q Consensus 423 ~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~-~ll~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~ 501 (627)
++++|.+++..|..+..+++|++|++++|.+.+.+|..+..+. .+ ++|++++|++.+..|..+..++ |++|++++|.
T Consensus 131 ~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L-~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~ 208 (313)
T 1ogq_A 131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLF-TSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM 208 (313)
T ss_dssp ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTC-CEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred eCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcC-cEEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence 8888888877888888888888888888888888888888887 55 8888999988888888888887 9999999999
Q ss_pred ccccCCccccCCCCCCEEECCCCcccccCChhccCCCCCCEEECCCCcCccccchhcccCc-CCeeeCcCCcccccCCCC
Q 037951 502 LSGEIPSELGLCSSLEEIYLAENFFNGFIPSFFRTSRGIRKVDLSRNNFFGQIPIFLEALS-LEYLNLSFNDFEGRLPTR 580 (627)
Q Consensus 502 l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~~~-L~~L~ls~n~l~~~~p~~ 580 (627)
+++..|..+..+++|++|++++|.+++.+|. +..+++|++|++++|.+.+.+|..+..++ |++|++++|++++.+|..
T Consensus 209 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~ 287 (313)
T 1ogq_A 209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG 287 (313)
T ss_dssp EEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS
T ss_pred ccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC
Confidence 9988888999999999999999999877766 78899999999999999999999998888 999999999999999988
Q ss_pred CccCCCCccccccCCCCcccC
Q 037951 581 GIFANASAISVGGCNRLCGGI 601 (627)
Q Consensus 581 ~~~~~l~~l~~~~n~~l~~~~ 601 (627)
+.+++++.+++.+||.+||.+
T Consensus 288 ~~l~~L~~l~l~~N~~lc~~p 308 (313)
T 1ogq_A 288 GNLQRFDVSAYANNKCLCGSP 308 (313)
T ss_dssp TTGGGSCGGGTCSSSEEESTT
T ss_pred ccccccChHHhcCCCCccCCC
Confidence 889999999999999999963
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-32 Score=280.08 Aligned_cols=333 Identities=21% Similarity=0.215 Sum_probs=180.2
Q ss_pred CCCCcEEEeecccCccCCChhhhhcCCCCceeccCCccccccCCccccCCCCCcEeecccccccccCccCcCCCCCcCEE
Q 037951 216 LSFLVIFSVSENQMHGSLPPSLGLYFPNLKLFQTNENFFSGSIPISLSNASKLEYVEIASNSFFGKLSVNFGGMKNLSYL 295 (627)
Q Consensus 216 l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L 295 (627)
+++++.++++++.+. .+|......+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..++++++|++|
T Consensus 44 l~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GCCCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCceEEEecCCchh-hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 455666666666654 3344333335555555555555544444444445555555555554444444444444444444
Q ss_pred eccCccCCCCCCCCccccccCCCCCcccEEEccCcccccccchhHHhccccccEEEeecccccccCcccccCCCCCCEEe
Q 037951 296 ILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLSSQLQILVLGTNQLYGSIPSGIGNLVNLYSLQ 375 (627)
Q Consensus 296 ~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 375 (627)
++++|.++.++. ..+..++ +|++|++++|.+.+..+..+..+++|+.|+
T Consensus 123 ~L~~n~l~~l~~------~~~~~l~-------------------------~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 171 (390)
T 3o6n_A 123 VLERNDLSSLPR------GIFHNTP-------------------------KLTTLSMSNNNLERIEDDTFQATTSLQNLQ 171 (390)
T ss_dssp ECCSSCCCCCCT------TTTTTCT-------------------------TCCEEECCSSCCCBCCTTTTSSCTTCCEEE
T ss_pred ECCCCccCcCCH------HHhcCCC-------------------------CCcEEECCCCccCccChhhccCCCCCCEEE
Confidence 444444443211 1123333 445555555544444444455555555555
Q ss_pred CCCCccccccchhhcCCCCCcEeeccCCcccccCChhhhCCCCCCEEEccCCccccccChhhcCCCCCCEEECcCCcCcc
Q 037951 376 TEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLGDNNLSGVIPSSLGNLERLAILEMFANELSG 455 (627)
Q Consensus 376 l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~ 455 (627)
+++|.+++. .+..+++|+.|++++|.+.+ +...++|++|++++|.+... +. ...++|+.|++++|.+.+
T Consensus 172 l~~n~l~~~---~~~~l~~L~~L~l~~n~l~~-----~~~~~~L~~L~l~~n~l~~~-~~--~~~~~L~~L~l~~n~l~~ 240 (390)
T 3o6n_A 172 LSSNRLTHV---DLSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSINVV-RG--PVNVELTILKLQHNNLTD 240 (390)
T ss_dssp CCSSCCSBC---CGGGCTTCSEEECCSSCCSE-----EECCSSCSEEECCSSCCCEE-EC--CCCSSCCEEECCSSCCCC
T ss_pred CCCCcCCcc---ccccccccceeecccccccc-----cCCCCcceEEECCCCeeeec-cc--cccccccEEECCCCCCcc
Confidence 555555532 13345556666666665542 12234566666666665533 22 123556666666666653
Q ss_pred cCCccccccccCccEEEccCCccccCCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEECCCCcccccCChhcc
Q 037951 456 TIPGDIFNISSLSVSLDLAENHFVGSIPPRIGNLKALRCFDVSNNDLSGEIPSELGLCSSLEEIYLAENFFNGFIPSFFR 535 (627)
Q Consensus 456 ~~~~~~~~~~~ll~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~ 535 (627)
. ..+..++.+ ++|++++|.+.+..|..+..+++|++|++++|+++ .+|..+..+++|++|++++|.++. +|..+.
T Consensus 241 ~--~~l~~l~~L-~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~ 315 (390)
T 3o6n_A 241 T--AWLLNYPGL-VEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLLH-VERNQP 315 (390)
T ss_dssp C--GGGGGCTTC-SEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCC-EEECSSSCCTTCCEEECCSSCCCC-CGGGHH
T ss_pred c--HHHcCCCCc-cEEECCCCcCCCcChhHccccccCCEEECCCCcCc-ccCcccCCCCCCCEEECCCCccee-cCcccc
Confidence 2 345555555 66666666666555666666777777777777766 345555666777777777777663 444566
Q ss_pred CCCCCCEEECCCCcCccccchhcccCc-CCeeeCcCCcccccCCCCCccCCCCccccccCCCCccc
Q 037951 536 TSRGIRKVDLSRNNFFGQIPIFLEALS-LEYLNLSFNDFEGRLPTRGIFANASAISVGGCNRLCGG 600 (627)
Q Consensus 536 ~l~~L~~L~ls~n~l~~~~p~~~~~~~-L~~L~ls~n~l~~~~p~~~~~~~l~~l~~~~n~~l~~~ 600 (627)
.+++|+.|++++|.+... | +..++ |++|++++|++...-. ...+..+....+.+++..|+.
T Consensus 316 ~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~~~-~~~~~~~~~~~~~~~~~~c~~ 377 (390)
T 3o6n_A 316 QFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSL-RALFRNVARPAVDDADQHCKI 377 (390)
T ss_dssp HHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHH-HHHTTTCCTTTBCCCCSCCCT
T ss_pred ccCcCCEEECCCCcccee-C--chhhccCCEEEcCCCCccchhH-HHHHHHHHhhcccccCceecc
Confidence 667777777777776633 2 33344 7777777777765321 223455555666666666654
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.8e-32 Score=271.70 Aligned_cols=307 Identities=27% Similarity=0.371 Sum_probs=209.8
Q ss_pred cCCCCCCCEEECCCCCCcccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEEccCccccccCCccccCCCCCC
Q 037951 69 IGNLSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLK 148 (627)
Q Consensus 69 l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~ 148 (627)
+..+++|++|+++++.+. .++ .+..+++|++|++++|.+++ ++. +.++++|++|++++|.++. + ..+..+++|+
T Consensus 40 ~~~l~~L~~L~l~~~~i~-~~~-~~~~~~~L~~L~l~~n~i~~-~~~-~~~l~~L~~L~L~~n~i~~-~-~~~~~l~~L~ 113 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVA-SIQ-GIEYLTNLEYLNLNGNQITD-ISP-LSNLVKLTNLYIGTNKITD-I-SALQNLTNLR 113 (347)
T ss_dssp HHHHTTCSEEECCSSCCC-CCT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCS
T ss_pred chhcccccEEEEeCCccc-cch-hhhhcCCccEEEccCCcccc-chh-hhcCCcCCEEEccCCcccC-c-hHHcCCCcCC
Confidence 446788999999999987 344 38889999999999999884 444 8899999999999998874 3 4688899999
Q ss_pred eeeCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCccCCCCCccEEEeeCccccccCCccccCCCCCcEEEeeccc
Q 037951 149 QLALPMNNLTGGIPPFLGNLTSLEVVSLAGNPFGGNIPDSLGQLKELKTLGIGGNNLSGSIPPSIYNLSFLVIFSVSENQ 228 (627)
Q Consensus 149 ~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~ 228 (627)
+|++++|.+.+. +. +.++++|++|++++|...... ..+..+++|++|++++|.+.... . +..+++|+.|++++|.
T Consensus 114 ~L~l~~n~i~~~-~~-~~~l~~L~~L~l~~n~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~-~-~~~l~~L~~L~l~~n~ 188 (347)
T 4fmz_A 114 ELYLNEDNISDI-SP-LANLTKMYSLNLGANHNLSDL-SPLSNMTGLNYLTVTESKVKDVT-P-IANLTDLYSLSLNYNQ 188 (347)
T ss_dssp EEECTTSCCCCC-GG-GTTCTTCCEEECTTCTTCCCC-GGGTTCTTCCEEECCSSCCCCCG-G-GGGCTTCSEEECTTSC
T ss_pred EEECcCCcccCc-hh-hccCCceeEEECCCCCCcccc-cchhhCCCCcEEEecCCCcCCch-h-hccCCCCCEEEccCCc
Confidence 999999988854 33 888899999999998665333 44788888888888888876432 2 6677777777777777
Q ss_pred CccCCChhhhhcCCCCceeccCCccccccCCccccCCCCCcEeecccccccccCccCcCCCCCcCEEeccCccCCCCCCC
Q 037951 229 MHGSLPPSLGLYFPNLKLFQTNENFFSGSIPISLSNASKLEYVEIASNSFFGKLSVNFGGMKNLSYLILEYNNLGSGESD 308 (627)
Q Consensus 229 l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~ 308 (627)
+.+. +. +..+++|+.+++++|.+.+..+ +..+++|++|++++|.++...
T Consensus 189 l~~~-~~--------------------------~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~-- 237 (347)
T 4fmz_A 189 IEDI-SP--------------------------LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLS-- 237 (347)
T ss_dssp CCCC-GG--------------------------GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCG--
T ss_pred cccc-cc--------------------------ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCc--
Confidence 6532 21 2334444444444444433322 444455555555555544321
Q ss_pred CccccccCCCCCcccEEEccCcccccccchhHHhccccccEEEeecccccccCcccccCCCCCCEEeCCCCccccccchh
Q 037951 309 EMGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLSSQLQILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSIPKE 388 (627)
Q Consensus 309 ~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~ 388 (627)
.+..+++|++|++++|.+++. ..+..++ +|++|++++|.+++. ..+..+++|+.|++++|.+++..+..
T Consensus 238 ------~~~~l~~L~~L~l~~n~l~~~--~~~~~l~-~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~ 306 (347)
T 4fmz_A 238 ------PLANLSQLTWLEIGTNQISDI--NAVKDLT-KLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEV 306 (347)
T ss_dssp ------GGTTCTTCCEEECCSSCCCCC--GGGTTCT-TCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHH
T ss_pred ------chhcCCCCCEEECCCCccCCC--hhHhcCC-CcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhH
Confidence 144455555555555555532 2233333 566666666666543 34667778888888888887777777
Q ss_pred hcCCCCCcEeeccCCcccccCChhhhCCCCCCEEEccCCccc
Q 037951 389 MGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLGDNNLS 430 (627)
Q Consensus 389 ~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~ 430 (627)
+..+++|+.|++++|.+++..| +..+++|++|++++|.++
T Consensus 307 l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 307 IGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp HHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred hhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 8888888888888888875544 677888888888888765
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-32 Score=295.90 Aligned_cols=321 Identities=20% Similarity=0.199 Sum_probs=191.8
Q ss_pred ccCCCCCcEeecccccccccCccCcCCCCCcCEEeccCccCCCCCCCCccccccCCCCCcccEEEccCcccccccchhHH
Q 037951 262 LSNASKLEYVEIASNSFFGKLSVNFGGMKNLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIA 341 (627)
Q Consensus 262 l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~ 341 (627)
+..+++|+.|++++|.+.+..+..|+.+++|++|++++|.+++..+ ..+.++++|+.|++++|.+++..+..+.
T Consensus 71 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~------~~~~~l~~L~~L~L~~n~l~~l~~~~~~ 144 (597)
T 3oja_B 71 LDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPP------HVFQNVPLLTVLVLERNDLSSLPRGIFH 144 (597)
T ss_dssp HHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCT------TTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred HccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCH------HHHcCCCCCCEEEeeCCCCCCCCHHHhc
Confidence 3344444444444444444444444444444444444444444221 2334445555555555555432222233
Q ss_pred hccccccEEEeecccccccCcccccCCCCCCEEeCCCCccccccchhhcCCCCCcEeeccCCcccccCChhhhCCCCCCE
Q 037951 342 NLSSQLQILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYE 421 (627)
Q Consensus 342 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~ 421 (627)
.+. +|++|++++|.+++..|..+..+++|+.|++++|.+++.. +..+++|+.|++++|.+.+ +...++|+.
T Consensus 145 ~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~~-----l~~~~~L~~ 215 (597)
T 3oja_B 145 NTP-KLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLST-----LAIPIAVEE 215 (597)
T ss_dssp TCT-TCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCCSE-----EECCTTCSE
T ss_pred cCC-CCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCcccc-----ccCCchhhe
Confidence 333 5555555555555555555666666666666666665432 3445666666666666653 233456677
Q ss_pred EEccCCccccccChhhcCCCCCCEEECcCCcCcccCCccccccccCccEEEccCCccccCCCccccCCCCCCEEEccCCc
Q 037951 422 IFLGDNNLSGVIPSSLGNLERLAILEMFANELSGTIPGDIFNISSLSVSLDLAENHFVGSIPPRIGNLKALRCFDVSNND 501 (627)
Q Consensus 422 L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~ll~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~ 501 (627)
|++++|.+....+. ..++|+.|++++|.+.+ +..+..++.+ ++|++++|.+.+..|..+..+++|++|++++|.
T Consensus 216 L~ls~n~l~~~~~~---~~~~L~~L~L~~n~l~~--~~~l~~l~~L-~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 289 (597)
T 3oja_B 216 LDASHNSINVVRGP---VNVELTILKLQHNNLTD--TAWLLNYPGL-VEVDLSYNELEKIMYHPFVKMQRLERLYISNNR 289 (597)
T ss_dssp EECCSSCCCEEECS---CCSCCCEEECCSSCCCC--CGGGGGCTTC-SEEECCSSCCCEEESGGGTTCSSCCEEECTTSC
T ss_pred eeccCCcccccccc---cCCCCCEEECCCCCCCC--ChhhccCCCC-CEEECCCCccCCCCHHHhcCccCCCEEECCCCC
Confidence 77777766533222 12567777777777664 3456666666 777777777777777777778888888888888
Q ss_pred ccccCCccccCCCCCCEEECCCCcccccCChhccCCCCCCEEECCCCcCccccchhcccCc-CCeeeCcCCcccccCCCC
Q 037951 502 LSGEIPSELGLCSSLEEIYLAENFFNGFIPSFFRTSRGIRKVDLSRNNFFGQIPIFLEALS-LEYLNLSFNDFEGRLPTR 580 (627)
Q Consensus 502 l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~~~-L~~L~ls~n~l~~~~p~~ 580 (627)
++ .+|..+..+++|+.|+|++|.++ .+|..+..+++|+.|++++|.+.+. | +..++ |+.|++++|++.+..+ .
T Consensus 290 l~-~l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~--~~~~~~L~~L~l~~N~~~~~~~-~ 363 (597)
T 3oja_B 290 LV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSL-R 363 (597)
T ss_dssp CC-EEECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHH-H
T ss_pred CC-CCCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc-C--hhhcCCCCEEEeeCCCCCChhH-H
Confidence 77 45666667788888888888877 4566677778888888888887743 2 33444 8888888888876532 2
Q ss_pred CccCCCCccccccCCCCcccCCCCCCCCC
Q 037951 581 GIFANASAISVGGCNRLCGGIHELQLPKC 609 (627)
Q Consensus 581 ~~~~~l~~l~~~~n~~l~~~~~~l~i~~c 609 (627)
..+..+....+.+++..|+..+.+....|
T Consensus 364 ~~~~~~~~~~~~~~~~~C~~~~~~~~~~c 392 (597)
T 3oja_B 364 ALFRNVARPAVDDADQHCKIDYQLEHGLC 392 (597)
T ss_dssp HHTTTCCTTTBCCCCCCCCTTCEEETTEE
T ss_pred HHHHHHhhhccccccccCCcchhccCCcc
Confidence 23556666667788878876554444444
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-31 Score=267.22 Aligned_cols=284 Identities=23% Similarity=0.348 Sum_probs=154.2
Q ss_pred ccCCCCCcEeecccccccccCccCcCCCCCcCEEeccCccCCCCCCCCccccccCCCCCcccEEEccCcccccccchhHH
Q 037951 262 LSNASKLEYVEIASNSFFGKLSVNFGGMKNLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIA 341 (627)
Q Consensus 262 l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~ 341 (627)
+..+++|++|++++|.+.+..+ +..+++|++|++++|.++.. ..+..+++|++|++++|.+.+..+ +.
T Consensus 62 ~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~--------~~~~~l~~L~~L~l~~n~i~~~~~--~~ 129 (347)
T 4fmz_A 62 IEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDI--------SALQNLTNLRELYLNEDNISDISP--LA 129 (347)
T ss_dssp GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--------GGGTTCTTCSEEECTTSCCCCCGG--GT
T ss_pred hhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCc--------hHHcCCCcCCEEECcCCcccCchh--hc
Confidence 4445555555555555544333 55556666666666555442 134555566666666665553222 33
Q ss_pred hccccccEEEeecccccccCcccccCCCCCCEEeCCCCccccccchhhcCCCCCcEeeccCCcccccCChhhhCCCCCCE
Q 037951 342 NLSSQLQILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYE 421 (627)
Q Consensus 342 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~ 421 (627)
.+. +|++|++++|.....++ .+..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+.+. +. +..+++|+.
T Consensus 130 ~l~-~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~-~~-~~~l~~L~~ 203 (347)
T 4fmz_A 130 NLT-KMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDI-SP-LASLTSLHY 203 (347)
T ss_dssp TCT-TCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCC-GG-GGGCTTCCE
T ss_pred cCC-ceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccccc-cc-ccCCCccce
Confidence 333 55666665554433322 25556666666666665553322 55566666666666665532 22 555666666
Q ss_pred EEccCCccccccChhhcCCCCCCEEECcCCcCcccCCccccccccCccEEEccCCccccCCCccccCCCCCCEEEccCCc
Q 037951 422 IFLGDNNLSGVIPSSLGNLERLAILEMFANELSGTIPGDIFNISSLSVSLDLAENHFVGSIPPRIGNLKALRCFDVSNND 501 (627)
Q Consensus 422 L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~ll~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~ 501 (627)
|++++|.+++..+ +..+++|+.|++++|.+.+ ++. +..++.+ ++|++++|.+.+. ..+..+++|++|++++|.
T Consensus 204 L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~-~~~-~~~l~~L-~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~ 276 (347)
T 4fmz_A 204 FTAYVNQITDITP--VANMTRLNSLKIGNNKITD-LSP-LANLSQL-TWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQ 276 (347)
T ss_dssp EECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-CGG-GTTCTTC-CEEECCSSCCCCC--GGGTTCTTCCEEECCSSC
T ss_pred eecccCCCCCCch--hhcCCcCCEEEccCCccCC-Ccc-hhcCCCC-CEEECCCCccCCC--hhHhcCCCcCEEEccCCc
Confidence 6666666553322 5555666666666665552 222 4455555 5666666655532 345566666666666666
Q ss_pred ccccCCccccCCCCCCEEECCCCcccccCChhccCCCCCCEEECCCCcCccccchhcccCc-CCeeeCcCCccc
Q 037951 502 LSGEIPSELGLCSSLEEIYLAENFFNGFIPSFFRTSRGIRKVDLSRNNFFGQIPIFLEALS-LEYLNLSFNDFE 574 (627)
Q Consensus 502 l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~~~-L~~L~ls~n~l~ 574 (627)
+++ + ..+..+++|++|++++|.+++..+..+..+++|+.|++++|++.+..| +..++ |++|++++|+++
T Consensus 277 l~~-~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 277 ISD-I-SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp CCC-C-GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred cCC-C-hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 653 2 245566666666666666666666666666666666666666665444 34444 666666666653
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
Probab=99.97 E-value=1.7e-34 Score=304.02 Aligned_cols=384 Identities=16% Similarity=0.148 Sum_probs=201.4
Q ss_pred CCCCEEECCCCCCCCCCCC-ccCCCCCccEEEeeCccccc----cCCccccCCCCCcEEEeecccCccCCChhhhhcCC-
Q 037951 169 TSLEVVSLAGNPFGGNIPD-SLGQLKELKTLGIGGNNLSG----SIPPSIYNLSFLVIFSVSENQMHGSLPPSLGLYFP- 242 (627)
Q Consensus 169 ~~L~~L~L~~n~~~~~~~~-~l~~l~~L~~L~l~~n~~~~----~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~- 242 (627)
++|++|+++++.++..... .+..+++|++|++++|.++. .++..+..+++|+.|++++|.+.+..+..+...++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 3456666666666532222 24556677777777776653 23455666677777777777666544444444333
Q ss_pred ---CCceeccCCccccc----cCCccccCCCCCcEeecccccccccCccC-----cCCCCCcCEEeccCccCCCCCCCCc
Q 037951 243 ---NLKLFQTNENFFSG----SIPISLSNASKLEYVEIASNSFFGKLSVN-----FGGMKNLSYLILEYNNLGSGESDEM 310 (627)
Q Consensus 243 ---~L~~L~l~~~~~~~----~~~~~l~~~~~L~~L~l~~~~~~~~~~~~-----l~~l~~L~~L~l~~n~l~~~~~~~~ 310 (627)
+|++|++++|.+++ .++..+..+++|++|++++|.+.+..+.. ....++|++|++++|.++.....
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~-- 160 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCE-- 160 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHH--
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHH--
Confidence 46666666665552 33455555666666666666554332221 12234455555555554432111
Q ss_pred cccccCCCCCcccEEEccCcccccccchhHHhccccccEEEeecccccccCcccccCCCCCCEEeCCCCccccc----cc
Q 037951 311 GFMNSLANCSKLQVLSLGGNQFRGALPHSIANLSSQLQILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGS----IP 386 (627)
Q Consensus 311 ~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~----~~ 386 (627)
.++..+..+++|++|++++|.+++..+..+..... ...++|+.|++++|.+++. ++
T Consensus 161 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~--------------------~~~~~L~~L~L~~n~l~~~~~~~l~ 220 (461)
T 1z7x_W 161 PLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLK--------------------DSPCQLEALKLESCGVTSDNCRDLC 220 (461)
T ss_dssp HHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHH--------------------HSCCCCCEEECTTSCCBTTHHHHHH
T ss_pred HHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHh--------------------cCCCCceEEEccCCCCcHHHHHHHH
Confidence 12223334455555555555544333322222100 0133455555555554432 23
Q ss_pred hhhcCCCCCcEeeccCCcccccC-----ChhhhCCCCCCEEEccCCccccc----cChhhcCCCCCCEEECcCCcCcccC
Q 037951 387 KEMGKLLNLQGLDFGGNHFSGEI-----PSTLGNLSSLYEIFLGDNNLSGV----IPSSLGNLERLAILEMFANELSGTI 457 (627)
Q Consensus 387 ~~~~~l~~L~~L~L~~n~~~~~~-----~~~~~~~~~L~~L~l~~n~~~~~----~~~~l~~l~~L~~L~l~~n~l~~~~ 457 (627)
..+..+++|+.|++++|.+.+.. +..+..+++|++|++++|.++.. ++..+..+++|++|++++|.+.+..
T Consensus 221 ~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~ 300 (461)
T 1z7x_W 221 GIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEG 300 (461)
T ss_dssp HHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHH
T ss_pred HHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHH
Confidence 44444555555555555544321 11122355555555555555532 3344445555666666555554322
Q ss_pred Ccccccc-----ccCccEEEccCCccccC----CCccccCCCCCCEEEccCCcccccCCccccC-----CCCCCEEECCC
Q 037951 458 PGDIFNI-----SSLSVSLDLAENHFVGS----IPPRIGNLKALRCFDVSNNDLSGEIPSELGL-----CSSLEEIYLAE 523 (627)
Q Consensus 458 ~~~~~~~-----~~ll~~L~l~~n~l~~~----~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~-----l~~L~~L~L~~ 523 (627)
+..+... +.+ ++|++++|.+.+. ++..+..+++|++|++++|.+++..+..+.. .++|++|++++
T Consensus 301 ~~~l~~~l~~~~~~L-~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~ 379 (461)
T 1z7x_W 301 ARLLCETLLEPGCQL-ESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLAD 379 (461)
T ss_dssp HHHHHHHHTSTTCCC-CEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred HHHHHHHhccCCccc-eeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCC
Confidence 2222211 244 5666666665543 3344566677888888888776554443332 56788888888
Q ss_pred Ccccc----cCChhccCCCCCCEEECCCCcCcccc----chhccc-C-cCCeeeCcCCcccc
Q 037951 524 NFFNG----FIPSFFRTSRGIRKVDLSRNNFFGQI----PIFLEA-L-SLEYLNLSFNDFEG 575 (627)
Q Consensus 524 n~i~~----~~~~~l~~l~~L~~L~ls~n~l~~~~----p~~~~~-~-~L~~L~ls~n~l~~ 575 (627)
|.+++ .+|..+..+++|++|++++|++.+.- ...+.. . .|+.|++.++....
T Consensus 380 n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~ 441 (461)
T 1z7x_W 380 CDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSE 441 (461)
T ss_dssp SCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCH
T ss_pred CCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCH
Confidence 88775 56777777788888888888776521 111211 2 27777777666544
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.5e-32 Score=272.29 Aligned_cols=281 Identities=18% Similarity=0.253 Sum_probs=210.4
Q ss_pred hhhcCCHHHHHHHHHHHHhcCCCCCCCCCCC----CCCCCCCCcccceeecCCCCcceecccccCCCCCCCEEECCCCCC
Q 037951 10 QVAAFEEGDLAALQAFKSMISHDPQGILNSW----NDSRHFCEWEGITCDLRSKALSGLLSPQIGNLSFLREINLMNNTI 85 (627)
Q Consensus 10 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~w----~~~~~~c~~~~~~c~l~~~~l~~~~~~~l~~l~~L~~L~Ls~~~~ 85 (627)
+.+++...|+++|..+|..+..++.++...| .....+|.|.|+.|+.....+. -....++++|++++|.+
T Consensus 20 ~~~~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~------~~~~~~l~~L~L~~n~l 93 (328)
T 4fcg_A 20 QGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLE------DATQPGRVALELRSVPL 93 (328)
T ss_dssp C--CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHH------HHTSTTCCEEEEESSCC
T ss_pred eccccCchHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcchhhhHHHHh------cccccceeEEEccCCCc
Confidence 3455667799999999999987887778889 4567889999998832111111 12357899999999999
Q ss_pred cccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEEccCccccccCCccccCCCCCCeeeCCCCCCCCCCCCCC
Q 037951 86 QGEIPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTGGIPPFL 165 (627)
Q Consensus 86 ~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l 165 (627)
+ .+|..+.++++|++|+|++|.++ .+|..++++++|++|++++|.+. .+|..+.++++|++|++++|.+.+.+|..+
T Consensus 94 ~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~ 170 (328)
T 4fcg_A 94 P-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPL 170 (328)
T ss_dssp S-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCS
T ss_pred h-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhH
Confidence 8 78888999999999999999999 88999999999999999999999 789999999999999999998888888876
Q ss_pred CC---------CCCCCEEECCCCCCCCCCCCccCCCCCccEEEeeCccccccCCccccCCCCCcEEEeecccCccCCChh
Q 037951 166 GN---------LTSLEVVSLAGNPFGGNIPDSLGQLKELKTLGIGGNNLSGSIPPSIYNLSFLVIFSVSENQMHGSLPPS 236 (627)
Q Consensus 166 ~~---------l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~ 236 (627)
.. +++|++|++++|.++ .+|..+..+++|++|++++|.++ .+|..+..+++|+.|++++|.+.+.+|..
T Consensus 171 ~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~ 248 (328)
T 4fcg_A 171 ASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPI 248 (328)
T ss_dssp EEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-CCCGGGGGCTTCCEEECTTCTTCCBCCCC
T ss_pred hhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-cCchhhccCCCCCEEECcCCcchhhhHHH
Confidence 54 777777777777777 56666777777777777777776 45556667777777777777666666655
Q ss_pred hhhcCCCCceeccCCccccccCCccccCCCCCcEeecccccccccCccCcCCCCCcCEEeccCccC
Q 037951 237 LGLYFPNLKLFQTNENFFSGSIPISLSNASKLEYVEIASNSFFGKLSVNFGGMKNLSYLILEYNNL 302 (627)
Q Consensus 237 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l 302 (627)
+.. +++|++|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|..++.+++++.+++..+.+
T Consensus 249 ~~~-l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~ 313 (328)
T 4fcg_A 249 FGG-RAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQ 313 (328)
T ss_dssp TTC-CCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGS
T ss_pred hcC-CCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHH
Confidence 544 66666666666666666666666666666666666666666666666666666666655433
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.1e-30 Score=258.62 Aligned_cols=288 Identities=22% Similarity=0.234 Sum_probs=181.0
Q ss_pred CCCEEECCCCCCcccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEEccCccccccCCccccCCCCCCeeeCC
Q 037951 74 FLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALP 153 (627)
Q Consensus 74 ~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~ 153 (627)
++++++++++.++ .+|..+. ++|++|++++|.+++..|..|.++++|++|++++|++++..|..+.++++|++|+++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred cCCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 4677777777776 5565553 577888888887776666677778888888888887776667777778888888888
Q ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCccCCCCCccEEEeeCccccc--cCCccccCCCCCcEEEeecccCcc
Q 037951 154 MNNLTGGIPPFLGNLTSLEVVSLAGNPFGGNIPDSLGQLKELKTLGIGGNNLSG--SIPPSIYNLSFLVIFSVSENQMHG 231 (627)
Q Consensus 154 ~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~--~~~~~l~~l~~L~~L~l~~n~l~~ 231 (627)
+|.++ .+|..+. ++|++|++++|.+.+..+..+..+++|++|++++|.++. ..+..+..+ +|+.|++++|.+.+
T Consensus 111 ~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~ 186 (332)
T 2ft3_A 111 KNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG 186 (332)
T ss_dssp SSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS
T ss_pred CCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc
Confidence 88777 4454444 678888888888876655667778888888888887753 455566666 77777777777663
Q ss_pred CCChhhhhcCCCCceeccCCccccccCCccccCCCCCcEeecccccccccCccCcCCCCCcCEEeccCccCCCCCCCCcc
Q 037951 232 SLPPSLGLYFPNLKLFQTNENFFSGSIPISLSNASKLEYVEIASNSFFGKLSVNFGGMKNLSYLILEYNNLGSGESDEMG 311 (627)
Q Consensus 232 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~ 311 (627)
+|..+ .++|++|++++|.+++..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.++.+
T Consensus 187 -l~~~~---~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l------ 256 (332)
T 2ft3_A 187 -IPKDL---PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRV------ 256 (332)
T ss_dssp -CCSSS---CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBC------
T ss_pred -cCccc---cCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeec------
Confidence 44332 24555556655555555445555555555555555555554444455555555555555544431
Q ss_pred ccccCCCCCcccEEEccCcccccccchhHHhccccccEEEeecccccccCcccccC------CCCCCEEeCCCCccc--c
Q 037951 312 FMNSLANCSKLQVLSLGGNQFRGALPHSIANLSSQLQILVLGTNQLYGSIPSGIGN------LVNLYSLQTEENQFT--G 383 (627)
Q Consensus 312 ~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~------l~~L~~L~l~~n~~~--~ 383 (627)
+..+..+++|+.|++++|+++ +..+..+.. .++|+.|++++|.+. +
T Consensus 257 -p~~l~~l~~L~~L~l~~N~l~-------------------------~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~ 310 (332)
T 2ft3_A 257 -PAGLPDLKLLQVVYLHTNNIT-------------------------KVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWE 310 (332)
T ss_dssp -CTTGGGCTTCCEEECCSSCCC-------------------------BCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGG
T ss_pred -ChhhhcCccCCEEECCCCCCC-------------------------ccChhHccccccccccccccceEeecCcccccc
Confidence 222344444445555444444 333333322 356777777777765 4
Q ss_pred ccchhhcCCCCCcEeeccCCc
Q 037951 384 SIPKEMGKLLNLQGLDFGGNH 404 (627)
Q Consensus 384 ~~~~~~~~l~~L~~L~L~~n~ 404 (627)
..+..+..+++|+.+++++|+
T Consensus 311 ~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 311 VQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp SCGGGGTTBCCSTTEEC----
T ss_pred cCcccccccchhhhhhccccc
Confidence 556677778888888887764
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
Probab=99.97 E-value=3.9e-33 Score=293.61 Aligned_cols=351 Identities=17% Similarity=0.114 Sum_probs=256.0
Q ss_pred CCCCceeccCCccccc----cCCccccCCCCCcEeecccccccccCccCc-CCCC----CcCEEeccCccCCCCCCCCcc
Q 037951 241 FPNLKLFQTNENFFSG----SIPISLSNASKLEYVEIASNSFFGKLSVNF-GGMK----NLSYLILEYNNLGSGESDEMG 311 (627)
Q Consensus 241 ~~~L~~L~l~~~~~~~----~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l-~~l~----~L~~L~l~~n~l~~~~~~~~~ 311 (627)
+++|++|++++|.+++ .++..+..+++|++|++++|.+.+..+..+ ..++ +|++|++++|.++..... .
T Consensus 27 ~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~--~ 104 (461)
T 1z7x_W 27 LQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCG--V 104 (461)
T ss_dssp HTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHH--H
T ss_pred cCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHH--H
Confidence 4444444444444432 234455566777777777777654332221 2233 688888888877642211 3
Q ss_pred ccccCCCCCcccEEEccCcccccccchhHHhc----cccccEEEeeccccccc----CcccccCCCCCCEEeCCCCcccc
Q 037951 312 FMNSLANCSKLQVLSLGGNQFRGALPHSIANL----SSQLQILVLGTNQLYGS----IPSGIGNLVNLYSLQTEENQFTG 383 (627)
Q Consensus 312 ~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~----~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~~~~ 383 (627)
++..+..+++|++|++++|.+++..+..+... .++|++|++++|.+++. ++..+..+++|++|++++|.++.
T Consensus 105 l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~ 184 (461)
T 1z7x_W 105 LSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINE 184 (461)
T ss_dssp HHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHH
T ss_pred HHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcch
Confidence 45677888899999999998876655555442 23699999999988763 35566778999999999999876
Q ss_pred ccchhhc-----CCCCCcEeeccCCccccc----CChhhhCCCCCCEEEccCCccccccC-----hhhcCCCCCCEEECc
Q 037951 384 SIPKEMG-----KLLNLQGLDFGGNHFSGE----IPSTLGNLSSLYEIFLGDNNLSGVIP-----SSLGNLERLAILEMF 449 (627)
Q Consensus 384 ~~~~~~~-----~l~~L~~L~L~~n~~~~~----~~~~~~~~~~L~~L~l~~n~~~~~~~-----~~l~~l~~L~~L~l~ 449 (627)
..+..+. ..++|+.|++++|.+++. ++..+..+++|++|++++|.++.... ..+..+++|+.|+++
T Consensus 185 ~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~ 264 (461)
T 1z7x_W 185 AGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIW 264 (461)
T ss_dssp HHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECT
T ss_pred HHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECc
Confidence 5444443 367999999999999864 46677889999999999999875432 223358999999999
Q ss_pred CCcCccc----CCccccccccCccEEEccCCccccCCCcccc-----CCCCCCEEEccCCccccc----CCccccCCCCC
Q 037951 450 ANELSGT----IPGDIFNISSLSVSLDLAENHFVGSIPPRIG-----NLKALRCFDVSNNDLSGE----IPSELGLCSSL 516 (627)
Q Consensus 450 ~n~l~~~----~~~~~~~~~~ll~~L~l~~n~l~~~~~~~l~-----~l~~L~~L~Ls~n~l~~~----~~~~l~~l~~L 516 (627)
+|.+.+. ++..+..++.+ ++|++++|.+.+..+..+. ..++|++|++++|.+++. ++..+..+++|
T Consensus 265 ~n~l~~~~~~~l~~~l~~~~~L-~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L 343 (461)
T 1z7x_W 265 ECGITAKGCGDLCRVLRAKESL-KELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFL 343 (461)
T ss_dssp TSCCCHHHHHHHHHHHHHCTTC-CEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSC
T ss_pred CCCCCHHHHHHHHHHHhhCCCc-ceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCc
Confidence 9998754 56667778888 9999999998754333332 237999999999999855 56677888999
Q ss_pred CEEECCCCcccccCChhccC-----CCCCCEEECCCCcCcc----ccchhcccCc-CCeeeCcCCccccc--------CC
Q 037951 517 EEIYLAENFFNGFIPSFFRT-----SRGIRKVDLSRNNFFG----QIPIFLEALS-LEYLNLSFNDFEGR--------LP 578 (627)
Q Consensus 517 ~~L~L~~n~i~~~~~~~l~~-----l~~L~~L~ls~n~l~~----~~p~~~~~~~-L~~L~ls~n~l~~~--------~p 578 (627)
++|++++|.+++..+..+.. .++|++|++++|.+.+ .+|..+...+ |++|++++|++.+. +|
T Consensus 344 ~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~ 423 (461)
T 1z7x_W 344 LELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVR 423 (461)
T ss_dssp CEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHT
T ss_pred cEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhc
Confidence 99999999998775554442 6799999999999986 7888887777 99999999998764 22
Q ss_pred CCCccCCCCccccccCCC
Q 037951 579 TRGIFANASAISVGGCNR 596 (627)
Q Consensus 579 ~~~~~~~l~~l~~~~n~~ 596 (627)
. ...+++.+.+.++..
T Consensus 424 ~--~~~~L~~L~~~~~~~ 439 (461)
T 1z7x_W 424 Q--PGCLLEQLVLYDIYW 439 (461)
T ss_dssp S--TTCCCCEEECTTCCC
T ss_pred c--CCcchhheeeccccc
Confidence 1 134577777776654
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-29 Score=254.25 Aligned_cols=294 Identities=18% Similarity=0.209 Sum_probs=165.4
Q ss_pred CCEEECCCCCCcccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEEccCccccccCCccccCCCCCCeeeCCC
Q 037951 75 LREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPM 154 (627)
Q Consensus 75 L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~ 154 (627)
+++++++++.++ .+|..+. +++++|++++|.+++..+..|+++++|++|++++|.+++..|..+..+++|++|++++
T Consensus 33 l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 109 (330)
T 1xku_A 33 LRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK 109 (330)
T ss_dssp TTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCC
Confidence 455555555554 3444332 4556666666666554444556666666666666666555555566666666666666
Q ss_pred CCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCccCCCCCccEEEeeCccccc--cCCccccCCCCCcEEEeecccCccC
Q 037951 155 NNLTGGIPPFLGNLTSLEVVSLAGNPFGGNIPDSLGQLKELKTLGIGGNNLSG--SIPPSIYNLSFLVIFSVSENQMHGS 232 (627)
Q Consensus 155 n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~--~~~~~l~~l~~L~~L~l~~n~l~~~ 232 (627)
|.++ .+|..+. ++|++|++++|.+.+..+..+..+++|++|++++|.+.. ..+..+..+++|+.|++++|.+. .
T Consensus 110 n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~ 185 (330)
T 1xku_A 110 NQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-T 185 (330)
T ss_dssp SCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-S
T ss_pred CcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc-c
Confidence 6655 3333332 566666666666665555556666666666666666642 44555666666666666666665 2
Q ss_pred CChhhhhcCCCCceeccCCccccccCCccccCCCCCcEeecccccccccCccCcCCCCCcCEEeccCccCCCCCCCCccc
Q 037951 233 LPPSLGLYFPNLKLFQTNENFFSGSIPISLSNASKLEYVEIASNSFFGKLSVNFGGMKNLSYLILEYNNLGSGESDEMGF 312 (627)
Q Consensus 233 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~ 312 (627)
+|... .++|++|++++|.+++..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.++.+
T Consensus 186 l~~~~---~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l------- 255 (330)
T 1xku_A 186 IPQGL---PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKV------- 255 (330)
T ss_dssp CCSSC---CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSC-------
T ss_pred CCccc---cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccC-------
Confidence 33322 25566666666666555555666666666666666666665555566666666666666665532
Q ss_pred cccCCCCCcccEEEccCcccccccchhHHhccccccEEEeecccccccCcccccCCCCCCEEeCCCCcccc--ccchhhc
Q 037951 313 MNSLANCSKLQVLSLGGNQFRGALPHSIANLSSQLQILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTG--SIPKEMG 390 (627)
Q Consensus 313 ~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~--~~~~~~~ 390 (627)
+..+..+++|++|++++|.+++..+..+.... .....+.++.+++++|.+.. ..|..+.
T Consensus 256 p~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~-------------------~~~~~~~l~~l~l~~N~~~~~~i~~~~f~ 316 (330)
T 1xku_A 256 PGGLADHKYIQVVYLHNNNISAIGSNDFCPPG-------------------YNTKKASYSGVSLFSNPVQYWEIQPSTFR 316 (330)
T ss_dssp CTTTTTCSSCCEEECCSSCCCCCCTTSSSCSS-------------------CCTTSCCCSEEECCSSSSCGGGSCGGGGT
T ss_pred ChhhccCCCcCEEECCCCcCCccChhhcCCcc-------------------cccccccccceEeecCcccccccCccccc
Confidence 23345556666666666655533332221110 00123566677777776542 4456677
Q ss_pred CCCCCcEeeccCCc
Q 037951 391 KLLNLQGLDFGGNH 404 (627)
Q Consensus 391 ~l~~L~~L~L~~n~ 404 (627)
.+++++.+++++|+
T Consensus 317 ~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 317 CVYVRAAVQLGNYK 330 (330)
T ss_dssp TCCCGGGEEC----
T ss_pred cccceeEEEecccC
Confidence 77777777777764
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-29 Score=253.55 Aligned_cols=129 Identities=20% Similarity=0.182 Sum_probs=61.9
Q ss_pred CCCEEECcCCcCcccCCccccccccCccEEEccCCccccCCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEC
Q 037951 442 RLAILEMFANELSGTIPGDIFNISSLSVSLDLAENHFVGSIPPRIGNLKALRCFDVSNNDLSGEIPSELGLCSSLEEIYL 521 (627)
Q Consensus 442 ~L~~L~l~~n~l~~~~~~~~~~~~~ll~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L 521 (627)
+|++|++++|.+.+..+..+..++.+ ++|++++|.+.+..+..+..+++|++|++++|+++ .+|..+..+++|++|++
T Consensus 194 ~L~~L~l~~n~i~~~~~~~l~~l~~L-~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l 271 (332)
T 2ft3_A 194 TLNELHLDHNKIQAIELEDLLRYSKL-YRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYL 271 (332)
T ss_dssp SCSCCBCCSSCCCCCCTTSSTTCTTC-SCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEEC
T ss_pred CCCEEECCCCcCCccCHHHhcCCCCC-CEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEEC
Confidence 34444444444433333333334444 44444444444444444555555555555555555 45555555555555555
Q ss_pred CCCcccccCChhccC------CCCCCEEECCCCcCc--cccchhcccCc-CCeeeCcCCc
Q 037951 522 AENFFNGFIPSFFRT------SRGIRKVDLSRNNFF--GQIPIFLEALS-LEYLNLSFND 572 (627)
Q Consensus 522 ~~n~i~~~~~~~l~~------l~~L~~L~ls~n~l~--~~~p~~~~~~~-L~~L~ls~n~ 572 (627)
++|.+++..+..|.. ...|+.|++++|++. +..|..+..+. |+.+++++|+
T Consensus 272 ~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 272 HTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred CCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 555555544444432 244556666666554 34444455444 6666665553
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=4.9e-29 Score=249.77 Aligned_cols=128 Identities=19% Similarity=0.197 Sum_probs=61.0
Q ss_pred CCCEEECcCCcCcccCCccccccccCccEEEccCCccccCCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEC
Q 037951 442 RLAILEMFANELSGTIPGDIFNISSLSVSLDLAENHFVGSIPPRIGNLKALRCFDVSNNDLSGEIPSELGLCSSLEEIYL 521 (627)
Q Consensus 442 ~L~~L~l~~n~l~~~~~~~~~~~~~ll~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L 521 (627)
+|++|++++|.+.+..+..+..++.+ ++|++++|.+.+..+..+..+++|++|++++|.++ .+|..+..+++|++|++
T Consensus 193 ~L~~L~l~~n~l~~~~~~~~~~l~~L-~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l 270 (330)
T 1xku_A 193 SLTELHLDGNKITKVDAASLKGLNNL-AKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYL 270 (330)
T ss_dssp TCSEEECTTSCCCEECTGGGTTCTTC-CEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEEC
T ss_pred cCCEEECCCCcCCccCHHHhcCCCCC-CEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEEC
Confidence 34444444444443333333344444 44444444444433344455555555555555555 45555555555555555
Q ss_pred CCCcccccCChhccC------CCCCCEEECCCCcCcc--ccchhcccCc-CCeeeCcCC
Q 037951 522 AENFFNGFIPSFFRT------SRGIRKVDLSRNNFFG--QIPIFLEALS-LEYLNLSFN 571 (627)
Q Consensus 522 ~~n~i~~~~~~~l~~------l~~L~~L~ls~n~l~~--~~p~~~~~~~-L~~L~ls~n 571 (627)
++|.+++..+..|.. ...++.+++++|++.. ..|..+.... ++.+++++|
T Consensus 271 ~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 271 HNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp CSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred CCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEeccc
Confidence 555555544444422 2455666666665542 3334444444 666666655
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.6e-29 Score=254.24 Aligned_cols=289 Identities=19% Similarity=0.175 Sum_probs=230.6
Q ss_pred CCCCCCCCCCCcccceeecCCCCcceecccccCCCCCCCEEECCCCCCcccCCcccCCCCCCCEEeCCCCcCcccCCccc
Q 037951 38 NSWNDSRHFCEWEGITCDLRSKALSGLLSPQIGNLSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPANL 117 (627)
Q Consensus 38 ~~w~~~~~~c~~~~~~c~l~~~~l~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~ 117 (627)
..|......|.|.++ |++++++++.. |..+. ++|++|++++|.+++..+..|.++++|++|++++|.+++..+..|
T Consensus 21 ~~~~~~~~~C~~~~~-c~~~~~~l~~i-P~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 96 (353)
T 2z80_A 21 ESSNQASLSCDRNGI-CKGSSGSLNSI-PSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSF 96 (353)
T ss_dssp ------CCEECTTSE-EECCSTTCSSC-CTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTT
T ss_pred cCCCccCCCCCCCeE-eeCCCCCcccc-ccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhc
Confidence 345556678999988 99999999865 44444 589999999999997777789999999999999999998888899
Q ss_pred cCCCCCCEEEccCccccccCCccccCCCCCCeeeCCCCCCCCCCC-CCCCCCCCCCEEECCCC-CCCCCCCCccCCCCCc
Q 037951 118 SYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTGGIP-PFLGNLTSLEVVSLAGN-PFGGNIPDSLGQLKEL 195 (627)
Q Consensus 118 ~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~L~~n-~~~~~~~~~l~~l~~L 195 (627)
+++++|++|++++|++++..+..+.++++|++|++++|.+++..+ ..+.++++|++|++++| .+....+..+..+++|
T Consensus 97 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L 176 (353)
T 2z80_A 97 SSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFL 176 (353)
T ss_dssp TTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEE
T ss_pred CCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCC
Confidence 999999999999999996666669999999999999999995444 47899999999999999 4776667889999999
Q ss_pred cEEEeeCccccccCCccccCCCCCcEEEeecccCccCCChhhhhcCCCCceeccCCccccccCCcccc---CCCCCcEee
Q 037951 196 KTLGIGGNNLSGSIPPSIYNLSFLVIFSVSENQMHGSLPPSLGLYFPNLKLFQTNENFFSGSIPISLS---NASKLEYVE 272 (627)
Q Consensus 196 ~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~---~~~~L~~L~ 272 (627)
++|++++|.+.+..|..+..+++|+.|++++|.+. .+|..+...+++|++|++++|.+++..+..+. ....++.++
T Consensus 177 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~ 255 (353)
T 2z80_A 177 EELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFT 255 (353)
T ss_dssp EEEEEEETTCCEECTTTTTTCSEEEEEEEECSCST-THHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEE
T ss_pred CEEECCCCCcCccCHHHHhccccCCeecCCCCccc-cchhhhhhhcccccEEECCCCccccccccccccccccchhhccc
Confidence 99999999999888999999999999999999985 56666666689999999999988875444332 355677777
Q ss_pred cccccccc----cCccCcCCCCCcCEEeccCccCCCCCCCCccccccCCCCCcccEEEccCcccccccc
Q 037951 273 IASNSFFG----KLSVNFGGMKNLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGALP 337 (627)
Q Consensus 273 l~~~~~~~----~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~ 337 (627)
++++.+.+ .+|..+..+++|++|++++|.++.++.. .+..+++|++|++++|++.+..|
T Consensus 256 L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~------~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 256 FRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDG------IFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp EESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTT------TTTTCTTCCEEECCSSCBCCCHH
T ss_pred cccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHH------HHhcCCCCCEEEeeCCCccCcCC
Confidence 77776654 2445567777888888888877754321 34667778888888887775543
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=99.96 E-value=7.7e-31 Score=285.25 Aligned_cols=379 Identities=15% Similarity=0.055 Sum_probs=207.6
Q ss_pred CCCCCCEEECCCCCCCCCCCCccCC-CC-CccEEEeeCccc-cc-cCCccccCCCCCcEEEeecccCccCCChh---hhh
Q 037951 167 NLTSLEVVSLAGNPFGGNIPDSLGQ-LK-ELKTLGIGGNNL-SG-SIPPSIYNLSFLVIFSVSENQMHGSLPPS---LGL 239 (627)
Q Consensus 167 ~l~~L~~L~L~~n~~~~~~~~~l~~-l~-~L~~L~l~~n~~-~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~~---~~~ 239 (627)
.+++|++|++++|.+++..+..+.. ++ +|++|++++|.. .. .++.....+++|+.|++++|.+.+....+ +..
T Consensus 110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~ 189 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ 189 (592)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence 4555555666555554333333333 22 366666665541 10 11122235566666666666655443221 223
Q ss_pred cCCCCceeccCCcccc----ccCCccccCCCCCcEeecccccccccCccCcCCCCCcCEEeccCccCCCCCCCCcccccc
Q 037951 240 YFPNLKLFQTNENFFS----GSIPISLSNASKLEYVEIASNSFFGKLSVNFGGMKNLSYLILEYNNLGSGESDEMGFMNS 315 (627)
Q Consensus 240 ~~~~L~~L~l~~~~~~----~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~ 315 (627)
.+++|++|+++++.++ +.++..+..+++|+.|++++|.+.+ .+..+..+++|++|+++........ ......
T Consensus 190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~---~~~~~~ 265 (592)
T 3ogk_B 190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGM---PEKYMN 265 (592)
T ss_dssp HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTC---TTSSSC
T ss_pred cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccch---HHHHHH
Confidence 3666666666666664 2334445566777777777766654 3345666777777777643221100 123345
Q ss_pred CCCCCcccEEEccCcccccccchhHHhccccccEEEeecccccccCc-ccccCCCCCCEEeCCCCccccccchhhcCCCC
Q 037951 316 LANCSKLQVLSLGGNQFRGALPHSIANLSSQLQILVLGTNQLYGSIP-SGIGNLVNLYSLQTEENQFTGSIPKEMGKLLN 394 (627)
Q Consensus 316 l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~ 394 (627)
+..+++|+.++++++... .+|..+..++ +|++|++++|.+++... ..+..+++|+.|+++++.....++.....+++
T Consensus 266 l~~~~~L~~L~l~~~~~~-~l~~~~~~~~-~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~ 343 (592)
T 3ogk_B 266 LVFPRKLCRLGLSYMGPN-EMPILFPFAA-QIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQ 343 (592)
T ss_dssp CCCCTTCCEEEETTCCTT-TGGGGGGGGG-GCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTT
T ss_pred hhccccccccCccccchh-HHHHHHhhcC-CCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCC
Confidence 666777777777765322 4555555444 77788887777554322 33567778888877733333333444456777
Q ss_pred CcEeeccC-----------Cccccc-CChhhhCCCCCCEEEccCCccccccChhhcC-CCCCCEEECc----CCcCccc-
Q 037951 395 LQGLDFGG-----------NHFSGE-IPSTLGNLSSLYEIFLGDNNLSGVIPSSLGN-LERLAILEMF----ANELSGT- 456 (627)
Q Consensus 395 L~~L~L~~-----------n~~~~~-~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~-l~~L~~L~l~----~n~l~~~- 456 (627)
|+.|++++ +.+++. +...+..+++|++|+++.|.+++..+..+.. +++|+.|+++ .|.+.+.
T Consensus 344 L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p 423 (592)
T 3ogk_B 344 LKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLP 423 (592)
T ss_dssp CCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCC
T ss_pred CCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCch
Confidence 88888873 444432 2222445778888888777777665555554 7778887775 4444421
Q ss_pred ----CCccccccccCccEEEccCCc--cccCCCcccc-CCCCCCEEEccCCccccc-CCccccCCCCCCEEECCCCcccc
Q 037951 457 ----IPGDIFNISSLSVSLDLAENH--FVGSIPPRIG-NLKALRCFDVSNNDLSGE-IPSELGLCSSLEEIYLAENFFNG 528 (627)
Q Consensus 457 ----~~~~~~~~~~ll~~L~l~~n~--l~~~~~~~l~-~l~~L~~L~Ls~n~l~~~-~~~~l~~l~~L~~L~L~~n~i~~ 528 (627)
++..+..++++ ++|+++.|. +.+..+..+. .+++|++|++++|++++. ++..+..+++|++|++++|.+++
T Consensus 424 ~~~~~~~~~~~~~~L-~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~ 502 (592)
T 3ogk_B 424 LDNGVRSLLIGCKKL-RRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSE 502 (592)
T ss_dssp CHHHHHHHHHHCTTC-CEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBH
T ss_pred HHHHHHHHHHhCCCC-CEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcH
Confidence 11223345555 566665433 3332222222 356666666666666542 33344556666666666666554
Q ss_pred c-CChhccCCCCCCEEECCCCcCcc
Q 037951 529 F-IPSFFRTSRGIRKVDLSRNNFFG 552 (627)
Q Consensus 529 ~-~~~~l~~l~~L~~L~ls~n~l~~ 552 (627)
. ++..+..+++|+.|++++|+++.
T Consensus 503 ~~~~~~~~~l~~L~~L~ls~n~it~ 527 (592)
T 3ogk_B 503 RAIAAAVTKLPSLRYLWVQGYRASM 527 (592)
T ss_dssp HHHHHHHHHCSSCCEEEEESCBCCT
T ss_pred HHHHHHHHhcCccCeeECcCCcCCH
Confidence 3 23333456666666666666654
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.96 E-value=5.4e-28 Score=239.52 Aligned_cols=229 Identities=23% Similarity=0.241 Sum_probs=132.6
Q ss_pred cccEEEeecccccccCcccccCCCCCCEEeCCCCccccc--cchhhcCCCCCcEeeccCCcccccCChhhhCCCCCCEEE
Q 037951 346 QLQILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGS--IPKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIF 423 (627)
Q Consensus 346 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~--~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ 423 (627)
++++|++++|.++...+..+..+++|+.|++++|.++.. .+..+..+++|+.|++++|.+. .++..+..+++|++|+
T Consensus 29 ~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~ 107 (306)
T 2z66_A 29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLD 107 (306)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEEE
T ss_pred CCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc-cChhhcCCCCCCCEEE
Confidence 455555555555533333345555555555555555422 2344445556666666666555 3444455556666666
Q ss_pred ccCCccccccC-hhhcCCCCCCEEECcCCcCcccCCccccccccCccEEEccCCcccc-CCCccccCCCCCCEEEccCCc
Q 037951 424 LGDNNLSGVIP-SSLGNLERLAILEMFANELSGTIPGDIFNISSLSVSLDLAENHFVG-SIPPRIGNLKALRCFDVSNND 501 (627)
Q Consensus 424 l~~n~~~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~ll~~L~l~~n~l~~-~~~~~l~~l~~L~~L~Ls~n~ 501 (627)
+++|.+++..+ ..+..+++|+.|++++|.+.+..+..+..++++ ++|++++|.+.+ ..|..+..+++|++|++++|.
T Consensus 108 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~ 186 (306)
T 2z66_A 108 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL-EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 186 (306)
T ss_dssp CTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTC-CEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC
T ss_pred CCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCC-CEEECCCCccccccchhHHhhCcCCCEEECCCCC
Confidence 66666554333 345555666666666666555555555555555 566666666554 345556666666666666666
Q ss_pred ccccCCccccCCCCCCEEECCCCcccccCChhccCCCCCCEEECCCCcCccccchhcccC-c-CCeeeCcCCccccc
Q 037951 502 LSGEIPSELGLCSSLEEIYLAENFFNGFIPSFFRTSRGIRKVDLSRNNFFGQIPIFLEAL-S-LEYLNLSFNDFEGR 576 (627)
Q Consensus 502 l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~~-~-L~~L~ls~n~l~~~ 576 (627)
+++..|..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.+..|..+... . |++|++++|++.+.
T Consensus 187 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~ 263 (306)
T 2z66_A 187 LEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT 263 (306)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECS
T ss_pred cCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecc
Confidence 665556666666666666666666666555556666666666666666666666555554 2 66666666666553
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.5e-30 Score=283.02 Aligned_cols=428 Identities=14% Similarity=0.088 Sum_probs=203.2
Q ss_pred ccccCCCCCCCEEECCCCCCc---ccCCcccC------------CCCCCCEEeCCCCcCcccCCccccC-CCC-CCEEEc
Q 037951 66 SPQIGNLSFLREINLMNNTIQ---GEIPLEFG------------RLRRLETLLLSDNSLVGKIPANLSY-CSR-LTVLVL 128 (627)
Q Consensus 66 ~~~l~~l~~L~~L~Ls~~~~~---~~~~~~~~------------~l~~L~~L~L~~n~i~~~~~~~~~~-l~~-L~~L~l 128 (627)
+..+..+++|++|+++++... +.+|..++ .+++|++|+|++|.+++..+..+.. +++ |++|++
T Consensus 66 ~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L 145 (592)
T 3ogk_B 66 DRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKL 145 (592)
T ss_dssp HHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEE
T ss_pred HHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEEC
Confidence 334456777888888775321 22332222 4566666666666655444444443 233 666666
Q ss_pred cCcc-ccc-cCCccccCCCCCCeeeCCCCCCCCCC----CCCCCCCCCCCEEECCCCCCCCCC----CCccCCCCCccEE
Q 037951 129 GNNK-LVG-SIPFEFVSLYKLKQLALPMNNLTGGI----PPFLGNLTSLEVVSLAGNPFGGNI----PDSLGQLKELKTL 198 (627)
Q Consensus 129 s~n~-l~~-~~~~~l~~l~~L~~L~l~~n~l~~~~----~~~l~~l~~L~~L~L~~n~~~~~~----~~~l~~l~~L~~L 198 (627)
++|. ++. .++.....+++|++|++++|.+++.. +..+..+++|++|++++|.+++.. +..+.++++|++|
T Consensus 146 ~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L 225 (592)
T 3ogk_B 146 DKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSV 225 (592)
T ss_dssp ESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEE
T ss_pred cCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEE
Confidence 6664 111 11122235566666666666554331 122334555666666555554211 1222334455555
Q ss_pred EeeCccccccCCccccCCCCCcEEEeecccCccCCChhhhhcCCCCceeccCCccccccCCccccCCCCCcEeecccccc
Q 037951 199 GIGGNNLSGSIPPSIYNLSFLVIFSVSENQMHGSLPPSLGLYFPNLKLFQTNENFFSGSIPISLSNASKLEYVEIASNSF 278 (627)
Q Consensus 199 ~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 278 (627)
++++|.+.+ ++..+..+++|+.++++..... .+ .+..+..+..+++|+.++++++.
T Consensus 226 ~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~--~~--------------------~~~~~~~l~~~~~L~~L~l~~~~- 281 (592)
T 3ogk_B 226 KVGDFEILE-LVGFFKAAANLEEFCGGSLNED--IG--------------------MPEKYMNLVFPRKLCRLGLSYMG- 281 (592)
T ss_dssp ECSSCBGGG-GHHHHHHCTTCCEEEECBCCCC--TT--------------------CTTSSSCCCCCTTCCEEEETTCC-
T ss_pred eccCccHHH-HHHHHhhhhHHHhhcccccccc--cc--------------------hHHHHHHhhccccccccCccccc-
Confidence 555544442 3333444444444444321110 00 01122234445556666555432
Q ss_pred cccCccCcCCCCCcCEEeccCccCCCCCCCCccccccCCCCCcccEEEccCcccccccchhHHhccccccEEEeeccccc
Q 037951 279 FGKLSVNFGGMKNLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLSSQLQILVLGTNQLY 358 (627)
Q Consensus 279 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 358 (627)
....+..+..+++|++|++++|.++.. .+...+..+++|++|+++ +.+.+..
T Consensus 282 ~~~l~~~~~~~~~L~~L~Ls~~~l~~~-----~~~~~~~~~~~L~~L~L~-~~~~~~~---------------------- 333 (592)
T 3ogk_B 282 PNEMPILFPFAAQIRKLDLLYALLETE-----DHCTLIQKCPNLEVLETR-NVIGDRG---------------------- 333 (592)
T ss_dssp TTTGGGGGGGGGGCCEEEETTCCCCHH-----HHHHHHTTCTTCCEEEEE-GGGHHHH----------------------
T ss_pred hhHHHHHHhhcCCCcEEecCCCcCCHH-----HHHHHHHhCcCCCEEecc-CccCHHH----------------------
Confidence 222333344455555555555543321 111223445555555555 2222222
Q ss_pred ccCcccccCCCCCCEEeCCC-----------Cccccc-cchhhcCCCCCcEeeccCCcccccCChhhhC-CCCCCEEEcc
Q 037951 359 GSIPSGIGNLVNLYSLQTEE-----------NQFTGS-IPKEMGKLLNLQGLDFGGNHFSGEIPSTLGN-LSSLYEIFLG 425 (627)
Q Consensus 359 ~~~~~~~~~l~~L~~L~l~~-----------n~~~~~-~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~-~~~L~~L~l~ 425 (627)
++.....+++|++|++++ +.+++. +......+++|+.|+++.|.+++..+..+.. +++|++|+++
T Consensus 334 --l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~ 411 (592)
T 3ogk_B 334 --LEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLV 411 (592)
T ss_dssp --HHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEE
T ss_pred --HHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEe
Confidence 222223344444444442 222221 1111233555555555555554443333333 5555555554
Q ss_pred ----CCccccc-----cChhhcCCCCCCEEECcCCc--CcccCCccccc-cccCccEEEccCCccccC-CCccccCCCCC
Q 037951 426 ----DNNLSGV-----IPSSLGNLERLAILEMFANE--LSGTIPGDIFN-ISSLSVSLDLAENHFVGS-IPPRIGNLKAL 492 (627)
Q Consensus 426 ----~n~~~~~-----~~~~l~~l~~L~~L~l~~n~--l~~~~~~~~~~-~~~ll~~L~l~~n~l~~~-~~~~l~~l~~L 492 (627)
.|.+++. ++..+..+++|+.|+++.|. +.+..+..+.. ++.+ ++|++++|.+.+. ++..+..+++|
T Consensus 412 ~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L-~~L~L~~n~l~~~~~~~~~~~~~~L 490 (592)
T 3ogk_B 412 LLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNV-RWMLLGYVGESDEGLMEFSRGCPNL 490 (592)
T ss_dssp ECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTC-CEEEECSCCSSHHHHHHHHTCCTTC
T ss_pred ecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccc-eEeeccCCCCCHHHHHHHHhcCccc
Confidence 3334321 22224445566666664332 33222222222 3444 6666666665542 23334667888
Q ss_pred CEEEccCCccccc-CCccccCCCCCCEEECCCCcccccCChhc-cCCCCCCEEECCCC
Q 037951 493 RCFDVSNNDLSGE-IPSELGLCSSLEEIYLAENFFNGFIPSFF-RTSRGIRKVDLSRN 548 (627)
Q Consensus 493 ~~L~Ls~n~l~~~-~~~~l~~l~~L~~L~L~~n~i~~~~~~~l-~~l~~L~~L~ls~n 548 (627)
++|++++|.+++. ++..+..+++|++|++++|+++......+ ..++.+....+..+
T Consensus 491 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~~ 548 (592)
T 3ogk_B 491 QKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSR 548 (592)
T ss_dssp CEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECCC
T ss_pred CeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecCc
Confidence 8888888887644 34445678888889998888876543333 34566655555443
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.9e-27 Score=232.90 Aligned_cols=266 Identities=19% Similarity=0.193 Sum_probs=194.3
Q ss_pred cEEEccCcccccccchhHHhccccccEEEeecccccccCcccccCCCCCCEEeCCCCccccccchhhcCCCCCcEeeccC
Q 037951 323 QVLSLGGNQFRGALPHSIANLSSQLQILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGG 402 (627)
Q Consensus 323 ~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~ 402 (627)
+.++.+++.++ .+|..+ ++++++|++++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++
T Consensus 14 ~~~~c~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 89 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGI---PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89 (285)
T ss_dssp CEEECCSSCCS-SCCTTC---CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred eEEEcCcCCcc-cCCcCC---CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence 34555555554 334322 23677777777777766666677777888888888877766677777788888888888
Q ss_pred Cc-ccccCChhhhCCCCCCEEEccCCccccccChhhcCCCCCCEEECcCCcCcccCCccccccccCccEEEccCCccccC
Q 037951 403 NH-FSGEIPSTLGNLSSLYEIFLGDNNLSGVIPSSLGNLERLAILEMFANELSGTIPGDIFNISSLSVSLDLAENHFVGS 481 (627)
Q Consensus 403 n~-~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~ll~~L~l~~n~l~~~ 481 (627)
|. +....+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..+..++.+ ++|++++|++.+.
T Consensus 90 n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-~~L~l~~n~l~~~ 168 (285)
T 1ozn_A 90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNL-THLFLHGNRISSV 168 (285)
T ss_dssp CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC-CEEECCSSCCCEE
T ss_pred CCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCc-cEEECCCCccccc
Confidence 86 665556677778888888888888877667777778888888888887775444456667777 7888888887766
Q ss_pred CCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEECCCCcccccCChhccCCCCCCEEECCCCcCccccchhcccC
Q 037951 482 IPPRIGNLKALRCFDVSNNDLSGEIPSELGLCSSLEEIYLAENFFNGFIPSFFRTSRGIRKVDLSRNNFFGQIPIFLEAL 561 (627)
Q Consensus 482 ~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~~ 561 (627)
.+..+..+++|++|++++|.+++..|..+..+++|+.|++++|.+++..+..+..+++|+.|++++|++....+.. +..
T Consensus 169 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~ 247 (285)
T 1ozn_A 169 PERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLW 247 (285)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHH
T ss_pred CHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH-HHH
Confidence 6666888889999999999988777888888899999999999998877777888899999999999887544422 112
Q ss_pred c-CCeeeCcCCcccccCCC---CCccCCCCccccccC
Q 037951 562 S-LEYLNLSFNDFEGRLPT---RGIFANASAISVGGC 594 (627)
Q Consensus 562 ~-L~~L~ls~n~l~~~~p~---~~~~~~l~~l~~~~n 594 (627)
. ++.+..+.+.+....|. +..+..+...++.||
T Consensus 248 ~~l~~~~~~~~~~~c~~p~~l~g~~l~~l~~~~l~~C 284 (285)
T 1ozn_A 248 AWLQKFRGSSSEVPCSLPQRLAGRDLKRLAANDLQGC 284 (285)
T ss_dssp HHHHHCCSEECCCBEEESGGGTTCBGGGSCGGGSCCC
T ss_pred HHHHhcccccCccccCCchHhCCcChhhcCHHHhccC
Confidence 3 66667777888777774 334556666666666
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.95 E-value=6e-27 Score=231.95 Aligned_cols=213 Identities=17% Similarity=0.189 Sum_probs=142.5
Q ss_pred ccCCCCCCEEeCCCCccccccchhhcCCCCCcEeeccCCcccccCC-hhhhCCCCCCEEEccCCccccccChhhcCCCCC
Q 037951 365 IGNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIP-STLGNLSSLYEIFLGDNNLSGVIPSSLGNLERL 443 (627)
Q Consensus 365 ~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~-~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L 443 (627)
+..+++|+.|++++|.++ .++..+..+++|+.|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+..+++|
T Consensus 74 ~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 152 (306)
T 2z66_A 74 DFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL 152 (306)
T ss_dssp HHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTC
T ss_pred cccccccCEEECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCC
Confidence 344555555555555555 344445556666666666666554333 345566666666666666665555666666666
Q ss_pred CEEECcCCcCcc-cCCccccccccCccEEEccCCccccCCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEECC
Q 037951 444 AILEMFANELSG-TIPGDIFNISSLSVSLDLAENHFVGSIPPRIGNLKALRCFDVSNNDLSGEIPSELGLCSSLEEIYLA 522 (627)
Q Consensus 444 ~~L~l~~n~l~~-~~~~~~~~~~~ll~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~ 522 (627)
++|++++|.+.+ ..|..+..++.+ ++|++++|.+.+..|..+..+++|++|++++|.+++..+..+..+++|++|+++
T Consensus 153 ~~L~l~~n~l~~~~~~~~~~~l~~L-~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 231 (306)
T 2z66_A 153 EVLKMAGNSFQENFLPDIFTELRNL-TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYS 231 (306)
T ss_dssp CEEECTTCEEGGGEECSCCTTCTTC-CEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECT
T ss_pred CEEECCCCccccccchhHHhhCcCC-CEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECC
Confidence 666666666654 355666666666 677777777776667778888889999999998886666678888999999999
Q ss_pred CCcccccCChhccCCC-CCCEEECCCCcCccccc--hhcccCc-CCeeeCcCCcccccCCC
Q 037951 523 ENFFNGFIPSFFRTSR-GIRKVDLSRNNFFGQIP--IFLEALS-LEYLNLSFNDFEGRLPT 579 (627)
Q Consensus 523 ~n~i~~~~~~~l~~l~-~L~~L~ls~n~l~~~~p--~~~~~~~-L~~L~ls~n~l~~~~p~ 579 (627)
+|.+++..|..+..++ +|+.|++++|++...-+ .+..-.. .+.+.+..+.+....|.
T Consensus 232 ~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~ 292 (306)
T 2z66_A 232 LNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPS 292 (306)
T ss_dssp TSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESG
T ss_pred CCCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCch
Confidence 9999888888888874 89999999999876422 2222223 45555566666655553
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=5.1e-27 Score=229.85 Aligned_cols=254 Identities=21% Similarity=0.183 Sum_probs=220.0
Q ss_pred ccEEEeecccccccCcccccCCCCCCEEeCCCCccccccchhhcCCCCCcEeeccCCcccccCChhhhCCCCCCEEEccC
Q 037951 347 LQILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLGD 426 (627)
Q Consensus 347 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~ 426 (627)
-++++.+++.++ .+|..+ .++|+.|++++|.+++..+..+..+++|+.|++++|.+++..+..|..+++|++|++++
T Consensus 13 ~~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 89 (285)
T 1ozn_A 13 KVTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89 (285)
T ss_dssp SCEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CeEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence 367888888887 455443 57999999999999987778899999999999999999988888999999999999999
Q ss_pred Cc-cccccChhhcCCCCCCEEECcCCcCcccCCccccccccCccEEEccCCccccCCCccccCCCCCCEEEccCCccccc
Q 037951 427 NN-LSGVIPSSLGNLERLAILEMFANELSGTIPGDIFNISSLSVSLDLAENHFVGSIPPRIGNLKALRCFDVSNNDLSGE 505 (627)
Q Consensus 427 n~-~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~ll~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ 505 (627)
|. +....+..+..+++|++|++++|.+.+..+..+..++++ ++|++++|.+.+..+..+..+++|++|++++|++++.
T Consensus 90 n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 168 (285)
T 1ozn_A 90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAAL-QYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSV 168 (285)
T ss_dssp CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC-CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEE
T ss_pred CCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCC-CEEECCCCcccccCHhHhccCCCccEEECCCCccccc
Confidence 98 876668889999999999999999997777888889999 9999999999977777799999999999999999966
Q ss_pred CCccccCCCCCCEEECCCCcccccCChhccCCCCCCEEECCCCcCccccchhcccCc-CCeeeCcCCcccccCCCCCccC
Q 037951 506 IPSELGLCSSLEEIYLAENFFNGFIPSFFRTSRGIRKVDLSRNNFFGQIPIFLEALS-LEYLNLSFNDFEGRLPTRGIFA 584 (627)
Q Consensus 506 ~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~~~-L~~L~ls~n~l~~~~p~~~~~~ 584 (627)
.+..+..+++|++|++++|.+++..|..+..+++|+.|++++|.+.+..+..+..++ |++|++++|++....+......
T Consensus 169 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~~~ 248 (285)
T 1ozn_A 169 PERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWA 248 (285)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHHHHH
T ss_pred CHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcHHHHH
Confidence 666799999999999999999999999999999999999999999987777788877 9999999999987665433444
Q ss_pred CCCccccccCCCCcccCCCC
Q 037951 585 NASAISVGGCNRLCGGIHEL 604 (627)
Q Consensus 585 ~l~~l~~~~n~~l~~~~~~l 604 (627)
.++.+....+...|..++.+
T Consensus 249 ~l~~~~~~~~~~~c~~p~~l 268 (285)
T 1ozn_A 249 WLQKFRGSSSEVPCSLPQRL 268 (285)
T ss_dssp HHHHCCSEECCCBEEESGGG
T ss_pred HHHhcccccCccccCCchHh
Confidence 55666677777777665543
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.95 E-value=5.4e-27 Score=233.78 Aligned_cols=222 Identities=18% Similarity=0.249 Sum_probs=146.2
Q ss_pred cccEEEeecccccccCcccccCCCCCCEEeCCCCccccccchhhcCCCCCcEeeccCCcccccCChhhhCCCCCCEEEcc
Q 037951 346 QLQILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLG 425 (627)
Q Consensus 346 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~ 425 (627)
.++.|++++|.++ .+|..+..+++|++|++++|.++ .+|..++.+++|+.|++++|.+. .+|..+..+++|++|+++
T Consensus 82 ~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~ 158 (328)
T 4fcg_A 82 GRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIR 158 (328)
T ss_dssp TCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEE
T ss_pred ceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECC
Confidence 5666666666665 45555666666666666666666 56666666666777777776666 556666666677777777
Q ss_pred CCccccccChhhcC---------CCCCCEEECcCCcCcccCCccccccccCccEEEccCCccccCCCccccCCCCCCEEE
Q 037951 426 DNNLSGVIPSSLGN---------LERLAILEMFANELSGTIPGDIFNISSLSVSLDLAENHFVGSIPPRIGNLKALRCFD 496 (627)
Q Consensus 426 ~n~~~~~~~~~l~~---------l~~L~~L~l~~n~l~~~~~~~~~~~~~ll~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 496 (627)
+|.+.+.+|..+.. +++|++|++++|.+. .+|..+..++.+ ++|++++|.+.+ +|..+..+++|++|+
T Consensus 159 ~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L-~~L~L~~N~l~~-l~~~l~~l~~L~~L~ 235 (328)
T 4fcg_A 159 ACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNL-KSLKIRNSPLSA-LGPAIHHLPKLEELD 235 (328)
T ss_dssp EETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTC-CEEEEESSCCCC-CCGGGGGCTTCCEEE
T ss_pred CCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCC-CEEEccCCCCCc-CchhhccCCCCCEEE
Confidence 66666566655443 666666666666666 666666666666 666666666663 444566666777777
Q ss_pred ccCCcccccCCccccCCCCCCEEECCCCcccccCChhccCCCCCCEEECCCCcCccccchhcccCc-CCeeeCcCCcc
Q 037951 497 VSNNDLSGEIPSELGLCSSLEEIYLAENFFNGFIPSFFRTSRGIRKVDLSRNNFFGQIPIFLEALS-LEYLNLSFNDF 573 (627)
Q Consensus 497 Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~~~-L~~L~ls~n~l 573 (627)
+++|++.+.+|..++.+++|++|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|..+..++ |+.+++..+.+
T Consensus 236 Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~ 313 (328)
T 4fcg_A 236 LRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQ 313 (328)
T ss_dssp CTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGS
T ss_pred CcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHH
Confidence 777666666666666667777777777666666666666677777777777776666676666666 66666665544
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.5e-27 Score=239.65 Aligned_cols=278 Identities=19% Similarity=0.208 Sum_probs=191.1
Q ss_pred CCCcCEEeccCccCCCCCCCCccccccCCCCCcccEEEccCcccccccchhHHhccccccEEEeecccccccCcccccCC
Q 037951 289 MKNLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLSSQLQILVLGTNQLYGSIPSGIGNL 368 (627)
Q Consensus 289 l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l 368 (627)
++.....+.+++.++.++. .+ .++|++|++++|.+++..+..+..+. +|++|++++|.+++..+..+.++
T Consensus 30 C~~~~~c~~~~~~l~~iP~-------~~--~~~L~~L~l~~n~i~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l 99 (353)
T 2z80_A 30 CDRNGICKGSSGSLNSIPS-------GL--TEAVKSLDLSNNRITYISNSDLQRCV-NLQALVLTSNGINTIEEDSFSSL 99 (353)
T ss_dssp ECTTSEEECCSTTCSSCCT-------TC--CTTCCEEECTTSCCCEECTTTTTTCT-TCCEEECTTSCCCEECTTTTTTC
T ss_pred CCCCeEeeCCCCCcccccc-------cc--cccCcEEECCCCcCcccCHHHhccCC-CCCEEECCCCccCccCHhhcCCC
Confidence 4445557777777776432 22 24788888888887765555666665 78888888888777667777778
Q ss_pred CCCCEEeCCCCccccccchhhcCCCCCcEeeccCCcccccCC-hhhhCCCCCCEEEccCCc-cccccChhhcCCCCCCEE
Q 037951 369 VNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIP-STLGNLSSLYEIFLGDNN-LSGVIPSSLGNLERLAIL 446 (627)
Q Consensus 369 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~-~~~~~~~~L~~L~l~~n~-~~~~~~~~l~~l~~L~~L 446 (627)
++|++|++++|++++..+..+..+++|++|++++|++.+..+ ..+..+++|++|++++|. +....+..+..+++|+.|
T Consensus 100 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L 179 (353)
T 2z80_A 100 GSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEEL 179 (353)
T ss_dssp TTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEE
T ss_pred CCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEE
Confidence 888888888887775555557777888888888887774333 367777888888888774 665556677777788888
Q ss_pred ECcCCcCcccCCccccccccCccEEEccCCccccCCCccccCCCCCCEEEccCCcccccCCccc---cCCCCCCEEECCC
Q 037951 447 EMFANELSGTIPGDIFNISSLSVSLDLAENHFVGSIPPRIGNLKALRCFDVSNNDLSGEIPSEL---GLCSSLEEIYLAE 523 (627)
Q Consensus 447 ~l~~n~l~~~~~~~~~~~~~ll~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l---~~l~~L~~L~L~~ 523 (627)
++++|.+.+..|..+..++.+ ++|++++|.+....+..+..+++|++|++++|.+++..+..+ ...+.++.+++++
T Consensus 180 ~l~~n~l~~~~~~~l~~l~~L-~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~ 258 (353)
T 2z80_A 180 EIDASDLQSYEPKSLKSIQNV-SHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRN 258 (353)
T ss_dssp EEEETTCCEECTTTTTTCSEE-EEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEES
T ss_pred ECCCCCcCccCHHHHhccccC-CeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhcccccc
Confidence 888887776667777777777 778888777753322334457777888888887775444333 2356677777777
Q ss_pred Cccccc----CChhccCCCCCCEEECCCCcCccccchh-cccCc-CCeeeCcCCcccccCC
Q 037951 524 NFFNGF----IPSFFRTSRGIRKVDLSRNNFFGQIPIF-LEALS-LEYLNLSFNDFEGRLP 578 (627)
Q Consensus 524 n~i~~~----~~~~l~~l~~L~~L~ls~n~l~~~~p~~-~~~~~-L~~L~ls~n~l~~~~p 578 (627)
+.+.+. +|..+..+++|+.|++++|.+. .+|.. +..++ |++|++++|++.+..|
T Consensus 259 ~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 259 VKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp CBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred ccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 776653 5666777777888888888777 45544 45555 7788888887776655
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=99.94 E-value=4.8e-26 Score=238.19 Aligned_cols=247 Identities=21% Similarity=0.238 Sum_probs=149.9
Q ss_pred cCEEeccCccCCCCCCCCccccccCCCCCcccEEEccCcccccccchhHHhccccccEEEeecccccccCcccccCCCCC
Q 037951 292 LSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLSSQLQILVLGTNQLYGSIPSGIGNLVNL 371 (627)
Q Consensus 292 L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L 371 (627)
...++.++..++.++. .+ .++++.|++++|.+++..+..+..+. +|++|++++|.+++..+..|.++++|
T Consensus 56 ~~~v~c~~~~l~~iP~-------~~--~~~l~~L~L~~n~i~~~~~~~~~~l~-~L~~L~Ls~n~i~~~~~~~~~~l~~L 125 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQ-------GI--PSNTRYLNLMENNIQMIQADTFRHLH-HLEVLQLGRNSIRQIEVGAFNGLASL 125 (452)
T ss_dssp SCEEECCSSCCSSCCS-------CC--CTTCSEEECCSSCCCEECTTTTTTCT-TCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred CcEEEECCCCcCccCC-------CC--CCCccEEECcCCcCceECHHHcCCCC-CCCEEECCCCccCCcChhhccCcccC
Confidence 4556666666555332 11 14666777777766666566666555 66666666666666655666666666
Q ss_pred CEEeCCCCccccccchhhcCCCCCcEeeccCCcccccCChhhhCCCCCCEEEccCCc-cccccChhhcCCCCCCEEECcC
Q 037951 372 YSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLGDNN-LSGVIPSSLGNLERLAILEMFA 450 (627)
Q Consensus 372 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~-~~~~~~~~l~~l~~L~~L~l~~ 450 (627)
+.|++++|.++...+..+..+++|+.|++++|.+....+..|..+++|++|++++|. +....+..+..+++|+.|++++
T Consensus 126 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~ 205 (452)
T 3zyi_A 126 NTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGM 205 (452)
T ss_dssp CEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTT
T ss_pred CEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCC
Confidence 666666666665555556666666666666666665555556666666666666643 3333333466666666666666
Q ss_pred CcCcccCCccccccccCccEEEccCCccccCCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEECCCCcccccC
Q 037951 451 NELSGTIPGDIFNISSLSVSLDLAENHFVGSIPPRIGNLKALRCFDVSNNDLSGEIPSELGLCSSLEEIYLAENFFNGFI 530 (627)
Q Consensus 451 n~l~~~~~~~~~~~~~ll~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~ 530 (627)
|.+. .+| .+..+..+ ++|++++|.+.+..|..|.++++|++|++++|++++..+..|..+++|+.|+|++|++++..
T Consensus 206 n~l~-~~~-~~~~l~~L-~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 282 (452)
T 3zyi_A 206 CNIK-DMP-NLTPLVGL-EELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLP 282 (452)
T ss_dssp SCCS-SCC-CCTTCTTC-CEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred Cccc-ccc-cccccccc-cEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccC
Confidence 6665 233 34455555 56666666666555556666666666666666666555555666666666666666666555
Q ss_pred ChhccCCCCCCEEECCCCcCc
Q 037951 531 PSFFRTSRGIRKVDLSRNNFF 551 (627)
Q Consensus 531 ~~~l~~l~~L~~L~ls~n~l~ 551 (627)
+..+..+++|+.|++++|++.
T Consensus 283 ~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 283 HDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp TTSSTTCTTCCEEECCSSCEE
T ss_pred hHHhccccCCCEEEccCCCcC
Confidence 555566666666666666553
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=5.7e-26 Score=236.75 Aligned_cols=247 Identities=23% Similarity=0.251 Sum_probs=156.0
Q ss_pred cCEEeccCccCCCCCCCCccccccCCCCCcccEEEccCcccccccchhHHhccccccEEEeecccccccCcccccCCCCC
Q 037951 292 LSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLSSQLQILVLGTNQLYGSIPSGIGNLVNL 371 (627)
Q Consensus 292 L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L 371 (627)
.+.++.++..++.++. .+ .++++.|++++|++.+..+..+..+. +|++|++++|.+.+..+..|.++++|
T Consensus 45 ~~~v~c~~~~l~~iP~-------~~--~~~l~~L~L~~n~i~~~~~~~~~~l~-~L~~L~Ls~n~i~~i~~~~~~~l~~L 114 (440)
T 3zyj_A 45 FSKVICVRKNLREVPD-------GI--STNTRLLNLHENQIQIIKVNSFKHLR-HLEILQLSRNHIRTIEIGAFNGLANL 114 (440)
T ss_dssp SCEEECCSCCCSSCCS-------CC--CTTCSEEECCSCCCCEECTTTTSSCS-SCCEEECCSSCCCEECGGGGTTCSSC
T ss_pred CCEEEeCCCCcCcCCC-------CC--CCCCcEEEccCCcCCeeCHHHhhCCC-CCCEEECCCCcCCccChhhccCCccC
Confidence 4566666666655432 12 15667777777777665556666555 67777777777666656666667777
Q ss_pred CEEeCCCCccccccchhhcCCCCCcEeeccCCcccccCChhhhCCCCCCEEEccCCc-cccccChhhcCCCCCCEEECcC
Q 037951 372 YSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLGDNN-LSGVIPSSLGNLERLAILEMFA 450 (627)
Q Consensus 372 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~-~~~~~~~~l~~l~~L~~L~l~~ 450 (627)
+.|++++|+++...+..+..+++|+.|++++|.+....+..|..+++|++|++++|. +....+..|..+++|+.|++++
T Consensus 115 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~ 194 (440)
T 3zyj_A 115 NTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAM 194 (440)
T ss_dssp CEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTT
T ss_pred CEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCC
Confidence 777777776665555566666777777777777665555566667777777776643 3333334566666777777777
Q ss_pred CcCcccCCccccccccCccEEEccCCccccCCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEECCCCcccccC
Q 037951 451 NELSGTIPGDIFNISSLSVSLDLAENHFVGSIPPRIGNLKALRCFDVSNNDLSGEIPSELGLCSSLEEIYLAENFFNGFI 530 (627)
Q Consensus 451 n~l~~~~~~~~~~~~~ll~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~ 530 (627)
|.+. .+| .+..+.++ ++|++++|.+.+..+..|..+++|++|++++|++++..+..|..+++|+.|+|++|++++..
T Consensus 195 n~l~-~~~-~~~~l~~L-~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 271 (440)
T 3zyj_A 195 CNLR-EIP-NLTPLIKL-DELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLP 271 (440)
T ss_dssp SCCS-SCC-CCTTCSSC-CEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCC
T ss_pred CcCc-ccc-ccCCCccc-CEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccC
Confidence 6665 444 35555555 66666666666655666666666666666666666555666666666666666666666655
Q ss_pred ChhccCCCCCCEEECCCCcCc
Q 037951 531 PSFFRTSRGIRKVDLSRNNFF 551 (627)
Q Consensus 531 ~~~l~~l~~L~~L~ls~n~l~ 551 (627)
+..|..+++|+.|++++|++.
T Consensus 272 ~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 272 HDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp TTTTSSCTTCCEEECCSSCEE
T ss_pred hhHhccccCCCEEEcCCCCcc
Confidence 555666666666666666653
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=5.5e-26 Score=236.85 Aligned_cols=248 Identities=21% Similarity=0.245 Sum_probs=217.4
Q ss_pred cccEEEccCcccccccchhHHhccccccEEEeecccccccCcccccCCCCCCEEeCCCCccccccchhhcCCCCCcEeec
Q 037951 321 KLQVLSLGGNQFRGALPHSIANLSSQLQILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDF 400 (627)
Q Consensus 321 ~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L 400 (627)
..+.++..+..++ .+|..+. ++++.|++++|.+.+..+..|.++++|+.|++++|.+++..+..|.++++|+.|++
T Consensus 44 ~~~~v~c~~~~l~-~iP~~~~---~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L 119 (440)
T 3zyj_A 44 QFSKVICVRKNLR-EVPDGIS---TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLEL 119 (440)
T ss_dssp TSCEEECCSCCCS-SCCSCCC---TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEEC
T ss_pred CCCEEEeCCCCcC-cCCCCCC---CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEEC
Confidence 4567888888887 5665443 48999999999999888889999999999999999999887889999999999999
Q ss_pred cCCcccccCChhhhCCCCCCEEEccCCccccccChhhcCCCCCCEEECcCCcCcccCCc-cccccccCccEEEccCCccc
Q 037951 401 GGNHFSGEIPSTLGNLSSLYEIFLGDNNLSGVIPSSLGNLERLAILEMFANELSGTIPG-DIFNISSLSVSLDLAENHFV 479 (627)
Q Consensus 401 ~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~-~~~~~~~ll~~L~l~~n~l~ 479 (627)
++|+++...+..|..+++|++|++++|.+....+..|..+++|+.|++++|...+.++. .+..++++ ++|++++|.+.
T Consensus 120 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L-~~L~L~~n~l~ 198 (440)
T 3zyj_A 120 FDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNL-RYLNLAMCNLR 198 (440)
T ss_dssp CSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSC-CEEECTTSCCS
T ss_pred CCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhccccc-CeecCCCCcCc
Confidence 99999977777899999999999999999987777899999999999999655545554 57778888 99999999998
Q ss_pred cCCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEECCCCcccccCChhccCCCCCCEEECCCCcCccccchhcc
Q 037951 480 GSIPPRIGNLKALRCFDVSNNDLSGEIPSELGLCSSLEEIYLAENFFNGFIPSFFRTSRGIRKVDLSRNNFFGQIPIFLE 559 (627)
Q Consensus 480 ~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~ 559 (627)
. +| .+..+++|++|++++|++++..|..|..+++|++|++++|.+++..+..|..+++|+.|++++|.+.+..+..+.
T Consensus 199 ~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 276 (440)
T 3zyj_A 199 E-IP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFT 276 (440)
T ss_dssp S-CC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTS
T ss_pred c-cc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhc
Confidence 4 44 478899999999999999988888999999999999999999999999999999999999999999977777777
Q ss_pred cCc-CCeeeCcCCcccc
Q 037951 560 ALS-LEYLNLSFNDFEG 575 (627)
Q Consensus 560 ~~~-L~~L~ls~n~l~~ 575 (627)
.+. |+.|++++|++.-
T Consensus 277 ~l~~L~~L~L~~Np~~C 293 (440)
T 3zyj_A 277 PLHHLERIHLHHNPWNC 293 (440)
T ss_dssp SCTTCCEEECCSSCEEC
T ss_pred cccCCCEEEcCCCCccC
Confidence 777 9999999999864
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=99.94 E-value=8.7e-26 Score=236.23 Aligned_cols=244 Identities=25% Similarity=0.187 Sum_probs=167.9
Q ss_pred eecCCCCcceecccccCCCCCCCEEECCCCCCcccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEEccCccc
Q 037951 54 CDLRSKALSGLLSPQIGNLSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLTVLVLGNNKL 133 (627)
Q Consensus 54 c~l~~~~l~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ls~n~l 133 (627)
.++++.+++. +|..+. +++++|+|++|.+++..+..|.++++|++|+|++|.+++..+..|.++++|++|++++|++
T Consensus 59 v~c~~~~l~~-iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l 135 (452)
T 3zyi_A 59 VVCTRRGLSE-VPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWL 135 (452)
T ss_dssp EECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred EEECCCCcCc-cCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcC
Confidence 3445555554 344333 5788888888888877788888888888888888888877778888888888888888888
Q ss_pred cccCCccccCCCCCCeeeCCCCCCCCCCCCCCCCCCCCCEEECCCC-CCCCCCCCccCCCCCccEEEeeCccccccCCcc
Q 037951 134 VGSIPFEFVSLYKLKQLALPMNNLTGGIPPFLGNLTSLEVVSLAGN-PFGGNIPDSLGQLKELKTLGIGGNNLSGSIPPS 212 (627)
Q Consensus 134 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n-~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~ 212 (627)
+...+..|..+++|++|++++|.++...+..|.++++|++|++++| .+....+..+..+++|++|++++|.+++ +| .
T Consensus 136 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~-~ 213 (452)
T 3zyi_A 136 TVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MP-N 213 (452)
T ss_dssp SBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-CC-C
T ss_pred CccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-cc-c
Confidence 8666677888888888888888888666667888888888888874 4444444567778888888888887763 33 3
Q ss_pred ccCCCCCcEEEeecccCccCCChhhhhcCCCCceeccCCccccccCCccccCCCCCcEeecccccccccCccCcCCCCCc
Q 037951 213 IYNLSFLVIFSVSENQMHGSLPPSLGLYFPNLKLFQTNENFFSGSIPISLSNASKLEYVEIASNSFFGKLSVNFGGMKNL 292 (627)
Q Consensus 213 l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L 292 (627)
+..+++|+.|++++|.+.+. .+..+..+++|+.|++++|.+.+..+..|.++++|
T Consensus 214 ~~~l~~L~~L~Ls~N~l~~~-------------------------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 268 (452)
T 3zyi_A 214 LTPLVGLEELEMSGNHFPEI-------------------------RPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASL 268 (452)
T ss_dssp CTTCTTCCEEECTTSCCSEE-------------------------CGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred ccccccccEEECcCCcCccc-------------------------CcccccCccCCCEEEeCCCcCceECHHHhcCCCCC
Confidence 55566666666666655543 34444555555555665555555555555566666
Q ss_pred CEEeccCccCCCCCCCCccccccCCCCCcccEEEccCcccc
Q 037951 293 SYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFR 333 (627)
Q Consensus 293 ~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~ 333 (627)
+.|++++|.++.... ..+..+++|+.|++++|.+.
T Consensus 269 ~~L~L~~N~l~~~~~------~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 269 VELNLAHNNLSSLPH------DLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp CEEECCSSCCSCCCT------TSSTTCTTCCEEECCSSCEE
T ss_pred CEEECCCCcCCccCh------HHhccccCCCEEEccCCCcC
Confidence 666666665554332 23445566666666666554
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=6.7e-27 Score=232.41 Aligned_cols=245 Identities=20% Similarity=0.258 Sum_probs=160.5
Q ss_pred CCCcccEEEccCcccccccchhHHhccccccEEEeecccccccCcccccCCCCCCEEeCCCCccccccchhhcCCCCCcE
Q 037951 318 NCSKLQVLSLGGNQFRGALPHSIANLSSQLQILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSIPKEMGKLLNLQG 397 (627)
Q Consensus 318 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~ 397 (627)
.+++|++|++++|++++..|..+..+. +|++|++++|.+++..+ +..+++|+.|++++|.+++.. ..++|+.
T Consensus 32 ~~~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~-----~~~~L~~ 103 (317)
T 3o53_A 32 SAWNVKELDLSGNPLSQISAADLAPFT-KLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIET 103 (317)
T ss_dssp TGGGCSEEECTTSCCCCCCHHHHTTCT-TCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEE-----ECTTCCE
T ss_pred cCCCCCEEECcCCccCcCCHHHhhCCC-cCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccccc-----CCCCcCE
Confidence 344555555555555544444555544 56666666666554333 556666666666666665322 2356666
Q ss_pred eeccCCcccccCChhhhCCCCCCEEEccCCccccccChhhcCCCCCCEEECcCCcCcccCCcccc-ccccCccEEEccCC
Q 037951 398 LDFGGNHFSGEIPSTLGNLSSLYEIFLGDNNLSGVIPSSLGNLERLAILEMFANELSGTIPGDIF-NISSLSVSLDLAEN 476 (627)
Q Consensus 398 L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~-~~~~ll~~L~l~~n 476 (627)
|++++|.+.+..+. .+++|++|++++|.+++..+..+..+++|+.|++++|.+.+..+..+. .++.+ ++|++++|
T Consensus 104 L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L-~~L~L~~N 179 (317)
T 3o53_A 104 LHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTL-EHLNLQYN 179 (317)
T ss_dssp EECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTC-CEEECTTS
T ss_pred EECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcC-CEEECCCC
Confidence 66666666644332 245667777777776665555666666777777777766654444443 45555 67777777
Q ss_pred ccccCCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEECCCCcccccCChhccCCCCCCEEECCCCcCc-cccc
Q 037951 477 HFVGSIPPRIGNLKALRCFDVSNNDLSGEIPSELGLCSSLEEIYLAENFFNGFIPSFFRTSRGIRKVDLSRNNFF-GQIP 555 (627)
Q Consensus 477 ~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~ls~n~l~-~~~p 555 (627)
.+.+. + ....+++|++|++++|+++ .+|..+..+++|++|++++|.++. +|..+..+++|+.|++++|++. +.+|
T Consensus 180 ~l~~~-~-~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~l~~L~~L~l~~N~~~~~~~~ 255 (317)
T 3o53_A 180 FIYDV-K-GQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLR 255 (317)
T ss_dssp CCCEE-E-CCCCCTTCCEEECCSSCCC-EECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCCBHHHHH
T ss_pred cCccc-c-cccccccCCEEECCCCcCC-cchhhhcccCcccEEECcCCcccc-hhhHhhcCCCCCEEEccCCCccCcCHH
Confidence 76644 2 2334788888888888888 455568888888999999888884 5667888888999999988888 6777
Q ss_pred hhcccCc-CCeeeCcCC-cccccCC
Q 037951 556 IFLEALS-LEYLNLSFN-DFEGRLP 578 (627)
Q Consensus 556 ~~~~~~~-L~~L~ls~n-~l~~~~p 578 (627)
.++...+ |+.+++++| .+.+..|
T Consensus 256 ~~~~~~~~L~~l~l~~~~~l~~~~~ 280 (317)
T 3o53_A 256 DFFSKNQRVQTVAKQTVKKLTGQNE 280 (317)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHSSSS
T ss_pred HHHhccccceEEECCCchhccCCch
Confidence 7777777 888888854 4555444
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.1e-27 Score=235.54 Aligned_cols=243 Identities=19% Similarity=0.185 Sum_probs=112.8
Q ss_pred CcccEEEccCcccccccchhHHhccccccEEEeeccccc-ccCccccc-------CCCCCCEEeCCCCccccccchhh--
Q 037951 320 SKLQVLSLGGNQFRGALPHSIANLSSQLQILVLGTNQLY-GSIPSGIG-------NLVNLYSLQTEENQFTGSIPKEM-- 389 (627)
Q Consensus 320 ~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~-------~l~~L~~L~l~~n~~~~~~~~~~-- 389 (627)
++|+.+++++|.+ .+|..+.. .++.|++++|.+. ..++..+. ++++|++|++++|++++..|..+
T Consensus 43 ~~L~~l~l~~n~l--~~p~~~~~---~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 117 (312)
T 1wwl_A 43 RSLEYLLKRVDTE--ADLGQFTD---IIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLE 117 (312)
T ss_dssp EECTTHHHHCCTT--CCCHHHHH---HHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSS
T ss_pred CCceeEeeccccc--ccHHHHHH---HHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHH
Confidence 4444555555554 34443333 2455555555542 22333222 45555555555555554444443
Q ss_pred cCCCCCcEeeccCCcccccCChhhhCC-----CCCCEEEccCCccccccChhhcCCCCCCEEECcCCcCcccC--Cccc-
Q 037951 390 GKLLNLQGLDFGGNHFSGEIPSTLGNL-----SSLYEIFLGDNNLSGVIPSSLGNLERLAILEMFANELSGTI--PGDI- 461 (627)
Q Consensus 390 ~~l~~L~~L~L~~n~~~~~~~~~~~~~-----~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~--~~~~- 461 (627)
..+++|+.|++++|++++. |..+..+ ++|++|++++|++++..+..+..+++|++|++++|++.+.+ +..+
T Consensus 118 ~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 196 (312)
T 1wwl_A 118 ATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALC 196 (312)
T ss_dssp CCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSC
T ss_pred hcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHH
Confidence 4555555555555555544 4444443 55555555555555444455555555555555555543321 1111
Q ss_pred -cccccCccEEEccCCcccc--CCC-ccccCCCCCCEEEccCCcccccCC-ccccCCCCCCEEECCCCcccccCChhccC
Q 037951 462 -FNISSLSVSLDLAENHFVG--SIP-PRIGNLKALRCFDVSNNDLSGEIP-SELGLCSSLEEIYLAENFFNGFIPSFFRT 536 (627)
Q Consensus 462 -~~~~~ll~~L~l~~n~l~~--~~~-~~l~~l~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~L~~n~i~~~~~~~l~~ 536 (627)
..++.+ ++|++++|++.+ .++ ..+.++++|++|++++|++++..| ..+..+++|++|++++|.++ .+|..+.
T Consensus 197 ~~~l~~L-~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~- 273 (312)
T 1wwl_A 197 PLKFPTL-QVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP- 273 (312)
T ss_dssp TTSCTTC-CEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC-
T ss_pred hccCCCC-CEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc-
Confidence 333333 444444444431 011 112344555555555555543332 23334455555555555554 3333333
Q ss_pred CCCCCEEECCCCcCccccchhcccCc-CCeeeCcCCccc
Q 037951 537 SRGIRKVDLSRNNFFGQIPIFLEALS-LEYLNLSFNDFE 574 (627)
Q Consensus 537 l~~L~~L~ls~n~l~~~~p~~~~~~~-L~~L~ls~n~l~ 574 (627)
++|+.||+++|++.+. |. +..++ |++|++++|+++
T Consensus 274 -~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 274 -AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFL 309 (312)
T ss_dssp -SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTT
T ss_pred -CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCC
Confidence 4455555555555433 33 33333 555555555544
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=99.93 E-value=3.8e-29 Score=272.09 Aligned_cols=418 Identities=16% Similarity=0.103 Sum_probs=196.2
Q ss_pred CEEECCCCCCcccCCcccCCCCCCCEEeCCCCcCcc---cCCc------------cccCCCCCCEEEccCccccccCCcc
Q 037951 76 REINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVG---KIPA------------NLSYCSRLTVLVLGNNKLVGSIPFE 140 (627)
Q Consensus 76 ~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~---~~~~------------~~~~l~~L~~L~ls~n~l~~~~~~~ 140 (627)
+.++++.+... .....+.++++|++|+++++.... ..|. ....+++|++|++++|.+++..+..
T Consensus 46 ~~l~~~~~~~~-~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~ 124 (594)
T 2p1m_B 46 RKVFIGNCYAV-SPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLEL 124 (594)
T ss_dssp CEEEESSTTSS-CHHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHH
T ss_pred eEEeecccccc-CHHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHH
Confidence 46677665433 223446678899999999875321 1111 1246778888888888877666666
Q ss_pred cc-CCCCCCeeeCCCC-CCCCC-CCCCCCCCCCCCEEECCCCCCCCCCCCccC----CCCCccEEEeeCccccccCCccc
Q 037951 141 FV-SLYKLKQLALPMN-NLTGG-IPPFLGNLTSLEVVSLAGNPFGGNIPDSLG----QLKELKTLGIGGNNLSGSIPPSI 213 (627)
Q Consensus 141 l~-~l~~L~~L~l~~n-~l~~~-~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~----~l~~L~~L~l~~n~~~~~~~~~l 213 (627)
+. .+++|++|++++| .++.. ++..+.++++|++|++++|.+++..+..+. .+++|++|++++|. . .
T Consensus 125 l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~-~-~----- 197 (594)
T 2p1m_B 125 IAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA-S-E----- 197 (594)
T ss_dssp HHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC-S-C-----
T ss_pred HHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC-C-c-----
Confidence 64 5788888888877 33321 233334677788888877776544333332 44566666666554 1 0
Q ss_pred cCCCCCcEEEeecccCccCCChhhhhcCCCCceeccCCccccccCCccccCCCCCcEeeccccc-------ccccCccCc
Q 037951 214 YNLSFLVIFSVSENQMHGSLPPSLGLYFPNLKLFQTNENFFSGSIPISLSNASKLEYVEIASNS-------FFGKLSVNF 286 (627)
Q Consensus 214 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~-------~~~~~~~~l 286 (627)
+.......+...+++|++|++++|...+.++..+..+++|+.++++.+. +.+. +..+
T Consensus 198 ---------------~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l-~~~l 261 (594)
T 2p1m_B 198 ---------------VSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGL-SVAL 261 (594)
T ss_dssp ---------------CCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHH-HHHH
T ss_pred ---------------CCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHH-HHHH
Confidence 1100011111123444444444442211233344445555555543321 1111 1134
Q ss_pred CCCCCcCEE-eccCccCCCCCCCCccccccCCCCCcccEEEccCcccccccchhHHhccccccEEEeecccccc-cCccc
Q 037951 287 GGMKNLSYL-ILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLSSQLQILVLGTNQLYG-SIPSG 364 (627)
Q Consensus 287 ~~l~~L~~L-~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~ 364 (627)
.++++|+.+ .+...... .+...+..+++|++|++++|.+++.....+....++|++|++++| +.+ .++..
T Consensus 262 ~~~~~L~~Ls~~~~~~~~-------~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l 333 (594)
T 2p1m_B 262 SGCKELRCLSGFWDAVPA-------YLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVL 333 (594)
T ss_dssp HTCTTCCEEECCBTCCGG-------GGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHH
T ss_pred hcCCCcccccCCcccchh-------hHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHH
Confidence 455555555 22211100 122222344555555555555443222222212225555555554 221 11111
Q ss_pred ccCCCCCCEEeCCC---------Cccccccchhhc-CCCCCcEeeccCCcccccCChhhh-CCCCCCEEEcc--C----C
Q 037951 365 IGNLVNLYSLQTEE---------NQFTGSIPKEMG-KLLNLQGLDFGGNHFSGEIPSTLG-NLSSLYEIFLG--D----N 427 (627)
Q Consensus 365 ~~~l~~L~~L~l~~---------n~~~~~~~~~~~-~l~~L~~L~L~~n~~~~~~~~~~~-~~~~L~~L~l~--~----n 427 (627)
...+++|+.|++.+ +.+++.....+. .+++|+.|++..|.+++.....+. .+++|+.|+++ + +
T Consensus 334 ~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~ 413 (594)
T 2p1m_B 334 ASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPD 413 (594)
T ss_dssp HHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCC
T ss_pred HHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcc
Confidence 22345555555522 223222111221 245555555555555433333332 35555555555 2 2
Q ss_pred ccccc-----cChhhcCCCCCCEEECcCCcCcccCCccccccccCccEEEccCCccccCCCccccC-CCCCCEEEccCCc
Q 037951 428 NLSGV-----IPSSLGNLERLAILEMFANELSGTIPGDIFNISSLSVSLDLAENHFVGSIPPRIGN-LKALRCFDVSNND 501 (627)
Q Consensus 428 ~~~~~-----~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~ll~~L~l~~n~l~~~~~~~l~~-l~~L~~L~Ls~n~ 501 (627)
.++.. ++..+..+++|+.|++++ .+.+..+..+.. +++|++|++++|.
T Consensus 414 ~l~~~~~~~~~~~l~~~~~~L~~L~L~~--------------------------~l~~~~~~~l~~~~~~L~~L~L~~~~ 467 (594)
T 2p1m_B 414 YLTLEPLDIGFGAIVEHCKDLRRLSLSG--------------------------LLTDKVFEYIGTYAKKMEMLSVAFAG 467 (594)
T ss_dssp TTTCCCTHHHHHHHHHHCTTCCEEECCS--------------------------SCCHHHHHHHHHHCTTCCEEEEESCC
T ss_pred cccCCchhhHHHHHHhhCCCccEEeecC--------------------------cccHHHHHHHHHhchhccEeeccCCC
Confidence 22211 111133444444444433 222222222222 5566666666666
Q ss_pred ccccCCccc-cCCCCCCEEECCCCcccccCCh-hccCCCCCCEEECCCCcCc
Q 037951 502 LSGEIPSEL-GLCSSLEEIYLAENFFNGFIPS-FFRTSRGIRKVDLSRNNFF 551 (627)
Q Consensus 502 l~~~~~~~l-~~l~~L~~L~L~~n~i~~~~~~-~l~~l~~L~~L~ls~n~l~ 551 (627)
+++..+..+ ..+++|++|++++|.+++..+. ....+++|+.|++++|+++
T Consensus 468 i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 519 (594)
T 2p1m_B 468 DSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVS 519 (594)
T ss_dssp SSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCB
T ss_pred CcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCC
Confidence 654433333 4466666666666666443322 2334566666666666664
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.93 E-value=3.1e-27 Score=234.30 Aligned_cols=227 Identities=19% Similarity=0.201 Sum_probs=139.7
Q ss_pred CCCCCCCEEECCCCCCcccCCcccCCCCCCCEEeCCCCcCc-ccCCcccc-------CCCCCCEEEccCccccccCCccc
Q 037951 70 GNLSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLV-GKIPANLS-------YCSRLTVLVLGNNKLVGSIPFEF 141 (627)
Q Consensus 70 ~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~n~i~-~~~~~~~~-------~l~~L~~L~ls~n~l~~~~~~~l 141 (627)
...++|++|++++|.+ .+|..+... |++|++++|.+. ...|..+. ++++|++|++++|++++..|..+
T Consensus 40 ~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 115 (312)
T 1wwl_A 40 GGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPL 115 (312)
T ss_dssp EEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCS
T ss_pred ccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHH
Confidence 3455677788888887 566655543 778888888773 44555554 67888888888888877777765
Q ss_pred --cCCCCCCeeeCCCCCCCCCCCCCCCCC-----CCCCEEECCCCCCCCCCCCccCCCCCccEEEeeCcccccc--CCcc
Q 037951 142 --VSLYKLKQLALPMNNLTGGIPPFLGNL-----TSLEVVSLAGNPFGGNIPDSLGQLKELKTLGIGGNNLSGS--IPPS 212 (627)
Q Consensus 142 --~~l~~L~~L~l~~n~l~~~~~~~l~~l-----~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~--~~~~ 212 (627)
..+++|++|++++|.+++. |..++.+ ++|++|++++|.+.+..+..+..+++|++|++++|.+.+. .+..
T Consensus 116 ~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 194 (312)
T 1wwl_A 116 LEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISA 194 (312)
T ss_dssp SSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHH
T ss_pred HHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHH
Confidence 7778888888888887765 6666655 7788888888887776667777778888888887776543 2233
Q ss_pred c--cCCCCCcEEEeecccCcc--CCChhhhhcCCCCceeccCCccccccCC-ccccCCCCCcEeecccccccccCccCcC
Q 037951 213 I--YNLSFLVIFSVSENQMHG--SLPPSLGLYFPNLKLFQTNENFFSGSIP-ISLSNASKLEYVEIASNSFFGKLSVNFG 287 (627)
Q Consensus 213 l--~~l~~L~~L~l~~n~l~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~l~ 287 (627)
+ ..+++|+.|++++|.+.+ .++..+...+++|++|++++|.+++..| ..+..+++|++|++++|.+. .+|..+.
T Consensus 195 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~ 273 (312)
T 1wwl_A 195 LCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP 273 (312)
T ss_dssp SCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC
T ss_pred HHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc
Confidence 3 667777777777777652 2222332334555555555555544332 22233444444444444443 2222222
Q ss_pred CCCCcCEEeccCccCCC
Q 037951 288 GMKNLSYLILEYNNLGS 304 (627)
Q Consensus 288 ~l~~L~~L~l~~n~l~~ 304 (627)
++|++|++++|.+++
T Consensus 274 --~~L~~L~Ls~N~l~~ 288 (312)
T 1wwl_A 274 --AKLSVLDLSYNRLDR 288 (312)
T ss_dssp --SEEEEEECCSSCCCS
T ss_pred --CCceEEECCCCCCCC
Confidence 344444444444433
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.8e-28 Score=266.76 Aligned_cols=360 Identities=16% Similarity=0.133 Sum_probs=224.5
Q ss_pred ccCCCCCCCEEECCCCCCcc---cCCcc------------cCCCCCCCEEeCCCCcCcccCCcccc-CCCCCCEEEccCc
Q 037951 68 QIGNLSFLREINLMNNTIQG---EIPLE------------FGRLRRLETLLLSDNSLVGKIPANLS-YCSRLTVLVLGNN 131 (627)
Q Consensus 68 ~l~~l~~L~~L~Ls~~~~~~---~~~~~------------~~~l~~L~~L~L~~n~i~~~~~~~~~-~l~~L~~L~ls~n 131 (627)
.+.++++|++|+++++.... ..|.. ...+++|++|++++|.+++..+..+. .+++|++|++++|
T Consensus 61 ~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~ 140 (594)
T 2p1m_B 61 VIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSC 140 (594)
T ss_dssp HHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESC
T ss_pred HHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCc
Confidence 45678899999999975321 11211 24678999999999998876666665 7899999999999
Q ss_pred -ccccc-CCccccCCCCCCeeeCCCCCCCCCCCCC----CCCCCCCCEEECCCCCCCCCCCCc----cCCCCCccEEEee
Q 037951 132 -KLVGS-IPFEFVSLYKLKQLALPMNNLTGGIPPF----LGNLTSLEVVSLAGNPFGGNIPDS----LGQLKELKTLGIG 201 (627)
Q Consensus 132 -~l~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~~~----l~~l~~L~~L~L~~n~~~~~~~~~----l~~l~~L~~L~l~ 201 (627)
.++.. ++..+..+++|++|++++|.+++..+.. ...+++|++|++++|. ....... +..+++|++|+++
T Consensus 141 ~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~l~~l~~~~~~L~~L~L~ 219 (594)
T 2p1m_B 141 EGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA-SEVSFSALERLVTRCPNLKSLKLN 219 (594)
T ss_dssp EEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC-SCCCHHHHHHHHHHCTTCCEEECC
T ss_pred CCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC-CcCCHHHHHHHHHhCCCCcEEecC
Confidence 55432 4445568999999999999987654433 3477899999999987 2111122 2346889999998
Q ss_pred CccccccCCccccCCCCCcEEEeecccCccCCChhhhhcCCCCceeccCCccccccCCccccCCCCCcEe-ecccccccc
Q 037951 202 GNNLSGSIPPSIYNLSFLVIFSVSENQMHGSLPPSLGLYFPNLKLFQTNENFFSGSIPISLSNASKLEYV-EIASNSFFG 280 (627)
Q Consensus 202 ~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L-~l~~~~~~~ 280 (627)
+|.....++..+..+++|+.|++..+... +..+.+.+ ++..+.++++|+.+ .+.+... .
T Consensus 220 ~~~~~~~l~~~~~~~~~L~~L~l~~~~~~------------------~~~~~~~~-l~~~l~~~~~L~~Ls~~~~~~~-~ 279 (594)
T 2p1m_B 220 RAVPLEKLATLLQRAPQLEELGTGGYTAE------------------VRPDVYSG-LSVALSGCKELRCLSGFWDAVP-A 279 (594)
T ss_dssp TTSCHHHHHHHHHHCTTCSEEECSBCCCC------------------CCHHHHHH-HHHHHHTCTTCCEEECCBTCCG-G
T ss_pred CCCcHHHHHHHHhcCCcceEcccccccCc------------------cchhhHHH-HHHHHhcCCCcccccCCcccch-h
Confidence 88332235666677788888876544320 11111111 22244556666666 3332211 2
Q ss_pred cCccCcCCCCCcCEEeccCccCCCCCCCCccccccCCCCCcccEEEccCcccccccchhHHhccccccEEEeec------
Q 037951 281 KLSVNFGGMKNLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLSSQLQILVLGT------ 354 (627)
Q Consensus 281 ~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~------ 354 (627)
.++..+..+++|++|++++|.++.. .+...+..+++|++|++++| +++.....+....++|++|++.+
T Consensus 280 ~l~~~~~~~~~L~~L~L~~~~l~~~-----~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~ 353 (594)
T 2p1m_B 280 YLPAVYSVCSRLTTLNLSYATVQSY-----DLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVM 353 (594)
T ss_dssp GGGGGHHHHTTCCEEECTTCCCCHH-----HHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCS
T ss_pred hHHHHHHhhCCCCEEEccCCCCCHH-----HHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCccccc
Confidence 2233334566777777777764431 12233456777888888777 44333333333233788888743
Q ss_pred ---ccccccCcccc-cCCCCCCEEeCCCCccccccchhhc-CCCCCcEeecc--C----Cccccc-----CChhhhCCCC
Q 037951 355 ---NQLYGSIPSGI-GNLVNLYSLQTEENQFTGSIPKEMG-KLLNLQGLDFG--G----NHFSGE-----IPSTLGNLSS 418 (627)
Q Consensus 355 ---n~l~~~~~~~~-~~l~~L~~L~l~~n~~~~~~~~~~~-~l~~L~~L~L~--~----n~~~~~-----~~~~~~~~~~ 418 (627)
+.+++.....+ ..+++|+.|.+..+.+++.....+. .+++|+.|+++ + +.+++. ++..+..+++
T Consensus 354 ~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~ 433 (594)
T 2p1m_B 354 EPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKD 433 (594)
T ss_dssp SCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTT
T ss_pred ccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCC
Confidence 33433222222 2478888888877777765555554 47888888888 3 444421 1223567889
Q ss_pred CCEEEccCCccccccChhhcC-CCCCCEEECcCCcCcc
Q 037951 419 LYEIFLGDNNLSGVIPSSLGN-LERLAILEMFANELSG 455 (627)
Q Consensus 419 L~~L~l~~n~~~~~~~~~l~~-l~~L~~L~l~~n~l~~ 455 (627)
|++|++++ .++......+.. +++|+.|++++|.+.+
T Consensus 434 L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~ 470 (594)
T 2p1m_B 434 LRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSD 470 (594)
T ss_dssp CCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSH
T ss_pred ccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcH
Confidence 99999977 665554445544 7778888888877653
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.93 E-value=4.6e-25 Score=236.29 Aligned_cols=165 Identities=22% Similarity=0.297 Sum_probs=112.8
Q ss_pred CCCCCCCCCCCCCCcccceeecCCCCcceecccccCCCCCCCEEECCCCCCcccCCcccCCCCCCCEEeCCCCcCcccCC
Q 037951 35 GILNSWNDSRHFCEWEGITCDLRSKALSGLLSPQIGNLSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIP 114 (627)
Q Consensus 35 ~~~~~w~~~~~~c~~~~~~c~l~~~~l~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~ 114 (627)
.+...|.....+|.|.+..+.+.. . ......++++|+++++.++ .+|..+. ++|++|++++|.++ .+|
T Consensus 10 ~~w~~W~~~~~~~~~~~r~~~~~~-----~---~~c~~~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp 77 (622)
T 3g06_A 10 AVWSAWRRAAPAEESRGRAAVVQK-----M---RACLNNGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLP 77 (622)
T ss_dssp CHHHHHHHTCCGGGHHHHHHHHHH-----H---HHHHHHCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCC
T ss_pred HHHHHHHhcCCcchhccccccCcc-----c---ccccCCCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCC
Confidence 344567666778898765431100 0 0001135889999999998 6777665 79999999999988 566
Q ss_pred ccccCCCCCCEEEccCccccccCCccccCCCCCCeeeCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCccCCCCC
Q 037951 115 ANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTGGIPPFLGNLTSLEVVSLAGNPFGGNIPDSLGQLKE 194 (627)
Q Consensus 115 ~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~ 194 (627)
. .+++|++|++++|+++ .+|. .+++|++|++++|.+++ +|. .+++|++|++++|.+++ +|.. +++
T Consensus 78 ~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~l~~-l~~---~l~~L~~L~L~~N~l~~-lp~~---l~~ 142 (622)
T 3g06_A 78 A---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSIFSNPLTH-LPA---LPSGLCKLWIFGNQLTS-LPVL---PPG 142 (622)
T ss_dssp C---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEECSCCCCC-CCC---CCTTCCEEECCSSCCSC-CCCC---CTT
T ss_pred C---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEECcCCcCCC-CCC---CCCCcCEEECCCCCCCc-CCCC---CCC
Confidence 5 5788999999999887 4554 67888888888888874 344 56778888888888874 4443 377
Q ss_pred ccEEEeeCccccccCCccccCCCCCcEEEeecccCc
Q 037951 195 LKTLGIGGNNLSGSIPPSIYNLSFLVIFSVSENQMH 230 (627)
Q Consensus 195 L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~ 230 (627)
|++|++++|.+++ +|. .+++|+.|++++|.++
T Consensus 143 L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~ 174 (622)
T 3g06_A 143 LQELSVSDNQLAS-LPA---LPSELCKLWAYNNQLT 174 (622)
T ss_dssp CCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS
T ss_pred CCEEECcCCcCCC-cCC---ccCCCCEEECCCCCCC
Confidence 7777777777763 332 2345556666665554
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.7e-26 Score=229.50 Aligned_cols=264 Identities=18% Similarity=0.165 Sum_probs=214.1
Q ss_pred cccEEEccCcccccccchhHHhccccccEEEeecccccccCcccccCCCCCCEEeCCCCccccccchhhcCCCCCcEeec
Q 037951 321 KLQVLSLGGNQFRGALPHSIANLSSQLQILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDF 400 (627)
Q Consensus 321 ~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L 400 (627)
.++..+++.+.+.......+.. .++|++|++++|.+++..+..+..+++|+.|++++|.+++..+ +..+++|+.|++
T Consensus 11 ~l~i~~ls~~~l~~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~L 87 (317)
T 3o53_A 11 RYKIEKVTDSSLKQALASLRQS-AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDL 87 (317)
T ss_dssp EEEEESCCTTTHHHHHHHHHTT-GGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEEC
T ss_pred ceeEeeccccchhhhHHHHhcc-CCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEEC
Confidence 4566677777776444333333 4489999999999998888889999999999999999986554 889999999999
Q ss_pred cCCcccccCChhhhCCCCCCEEEccCCccccccChhhcCCCCCCEEECcCCcCcccCCccccccccCccEEEccCCcccc
Q 037951 401 GGNHFSGEIPSTLGNLSSLYEIFLGDNNLSGVIPSSLGNLERLAILEMFANELSGTIPGDIFNISSLSVSLDLAENHFVG 480 (627)
Q Consensus 401 ~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~ll~~L~l~~n~l~~ 480 (627)
++|.+++.. ..++|++|++++|.+++..+. .+++|+.|++++|.+.+..+..+..++.+ ++|++++|.+.+
T Consensus 88 s~n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L-~~L~Ls~N~l~~ 158 (317)
T 3o53_A 88 NNNYVQELL-----VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRV-QYLDLKLNEIDT 158 (317)
T ss_dssp CSSEEEEEE-----ECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSE-EEEECTTSCCCE
T ss_pred cCCcccccc-----CCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCC-CEEECCCCCCCc
Confidence 999988432 348999999999999876544 46889999999999997767778888888 999999999998
Q ss_pred CCCccc-cCCCCCCEEEccCCcccccCCccccCCCCCCEEECCCCcccccCChhccCCCCCCEEECCCCcCccccchhcc
Q 037951 481 SIPPRI-GNLKALRCFDVSNNDLSGEIPSELGLCSSLEEIYLAENFFNGFIPSFFRTSRGIRKVDLSRNNFFGQIPIFLE 559 (627)
Q Consensus 481 ~~~~~l-~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~ 559 (627)
..+..+ ..+++|++|++++|.+++. + ....+++|++|++++|.+++..+ .+..+++|+.|++++|.+. .+|..+.
T Consensus 159 ~~~~~~~~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~l~~-~~~~l~~L~~L~L~~N~l~-~l~~~~~ 234 (317)
T 3o53_A 159 VNFAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLV-LIEKALR 234 (317)
T ss_dssp EEGGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCC-EECTTCC
T ss_pred ccHHHHhhccCcCCEEECCCCcCccc-c-cccccccCCEEECCCCcCCcchh-hhcccCcccEEECcCCccc-chhhHhh
Confidence 777666 4789999999999999844 3 33458999999999999997544 4889999999999999998 5777777
Q ss_pred cCc-CCeeeCcCCccc-ccCCC-CCccCCCCccccccCCCCccc
Q 037951 560 ALS-LEYLNLSFNDFE-GRLPT-RGIFANASAISVGGCNRLCGG 600 (627)
Q Consensus 560 ~~~-L~~L~ls~n~l~-~~~p~-~~~~~~l~~l~~~~n~~l~~~ 600 (627)
.++ |+.|++++|++. +.+|. ...++.++.+++.+|+.+.|.
T Consensus 235 ~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~ 278 (317)
T 3o53_A 235 FSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQ 278 (317)
T ss_dssp CCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSS
T ss_pred cCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCC
Confidence 777 999999999998 55553 244567788888866555443
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.7e-25 Score=235.13 Aligned_cols=235 Identities=21% Similarity=0.260 Sum_probs=139.6
Q ss_pred CCcccEEEccCcccccccchhHHhccccccEEEeecccccccCcccccCCCCCCEEeCCCCccccccchhhcCCCCCcEe
Q 037951 319 CSKLQVLSLGGNQFRGALPHSIANLSSQLQILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGL 398 (627)
Q Consensus 319 ~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L 398 (627)
+++|+.|++++|.+++..|..+..+. +|++|++++|.+++..+ +..+++|+.|++++|.+++.. ..++|+.|
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~L 104 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFT-KLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETL 104 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCT-TCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-----ECTTCCEE
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCC-CCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-----CCCCcCEE
Confidence 34566666666666555555555554 56666666666654443 556666666666666665322 12566666
Q ss_pred eccCCcccccCChhhhCCCCCCEEEccCCccccccChhhcCCCCCCEEECcCCcCcccCCcccc-ccccCccEEEccCCc
Q 037951 399 DFGGNHFSGEIPSTLGNLSSLYEIFLGDNNLSGVIPSSLGNLERLAILEMFANELSGTIPGDIF-NISSLSVSLDLAENH 477 (627)
Q Consensus 399 ~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~-~~~~ll~~L~l~~n~ 477 (627)
++++|.+.+..+. .+++|+.|++++|.+++..|..+..+++|+.|++++|.+.+..|..+. .++.+ ++|++++|.
T Consensus 105 ~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L-~~L~Ls~N~ 180 (487)
T 3oja_A 105 HAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTL-EHLNLQYNF 180 (487)
T ss_dssp ECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTC-CEEECTTSC
T ss_pred ECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcc-cEEecCCCc
Confidence 6666666544332 245666666666666655555566666666666666666655555554 45555 666666666
Q ss_pred cccCCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEECCCCcccccCChhccCCCCCCEEECCCCcCc-cccch
Q 037951 478 FVGSIPPRIGNLKALRCFDVSNNDLSGEIPSELGLCSSLEEIYLAENFFNGFIPSFFRTSRGIRKVDLSRNNFF-GQIPI 556 (627)
Q Consensus 478 l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~ls~n~l~-~~~p~ 556 (627)
+.+.. ....+++|++|++++|.+++ +|..+..+++|+.|++++|.+++ +|..+..+++|+.|++++|++. +.+|.
T Consensus 181 l~~~~--~~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~ 256 (487)
T 3oja_A 181 IYDVK--GQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRD 256 (487)
T ss_dssp CCEEE--CCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHH
T ss_pred ccccc--ccccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHH
Confidence 65442 12346667777777777763 34446666777777777777764 4555666677777777777766 45555
Q ss_pred hcccCc-CCeeeCc
Q 037951 557 FLEALS-LEYLNLS 569 (627)
Q Consensus 557 ~~~~~~-L~~L~ls 569 (627)
++...+ |+.++++
T Consensus 257 ~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 257 FFSKNQRVQTVAKQ 270 (487)
T ss_dssp HHTTCHHHHHHHHH
T ss_pred HHHhCCCCcEEecc
Confidence 555555 6666654
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=2.4e-25 Score=233.93 Aligned_cols=240 Identities=19% Similarity=0.156 Sum_probs=199.5
Q ss_pred cccEEEeecccccccCcccccCCCCCCEEeCCCCccccccchhhcCCCCCcEeeccCCcccccCChhhhCCCCCCEEEcc
Q 037951 346 QLQILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLG 425 (627)
Q Consensus 346 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~ 425 (627)
+|+.|++++|.+++..|..+..+++|+.|++++|.+++..+ +..+++|+.|++++|.+++.. ..++|++|+++
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~L~L~ 107 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETLHAA 107 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-----ECTTCCEEECC
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-----CCCCcCEEECc
Confidence 79999999999998888899999999999999999987665 889999999999999988432 33899999999
Q ss_pred CCccccccChhhcCCCCCCEEECcCCcCcccCCccccccccCccEEEccCCccccCCCcccc-CCCCCCEEEccCCcccc
Q 037951 426 DNNLSGVIPSSLGNLERLAILEMFANELSGTIPGDIFNISSLSVSLDLAENHFVGSIPPRIG-NLKALRCFDVSNNDLSG 504 (627)
Q Consensus 426 ~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~ll~~L~l~~n~l~~~~~~~l~-~l~~L~~L~Ls~n~l~~ 504 (627)
+|.+++..+. .+++|+.|++++|.+.+..|..+..++.+ ++|++++|.+.+..|..+. .+++|++|++++|.+++
T Consensus 108 ~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L-~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~ 183 (487)
T 3oja_A 108 NNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRV-QYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD 183 (487)
T ss_dssp SSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSE-EEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred CCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCC-CEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccc
Confidence 9999876553 46889999999999998878888888888 8999999999988887776 78999999999999985
Q ss_pred cCCccccCCCCCCEEECCCCcccccCChhccCCCCCCEEECCCCcCccccchhcccCc-CCeeeCcCCccc-ccCCC-CC
Q 037951 505 EIPSELGLCSSLEEIYLAENFFNGFIPSFFRTSRGIRKVDLSRNNFFGQIPIFLEALS-LEYLNLSFNDFE-GRLPT-RG 581 (627)
Q Consensus 505 ~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~~~-L~~L~ls~n~l~-~~~p~-~~ 581 (627)
. | ....+++|++|+|++|.+++..|. +..+++|+.|++++|.+.+ +|..+..++ |+.|++++|++. +.+|. ..
T Consensus 184 ~-~-~~~~l~~L~~L~Ls~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~ 259 (487)
T 3oja_A 184 V-K-GQVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFS 259 (487)
T ss_dssp E-E-CCCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHT
T ss_pred c-c-ccccCCCCCEEECCCCCCCCCCHh-HcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHH
Confidence 5 3 244689999999999999976554 8889999999999999995 777777777 999999999998 44442 23
Q ss_pred ccCCCCccccc-------cCCCCccc
Q 037951 582 IFANASAISVG-------GCNRLCGG 600 (627)
Q Consensus 582 ~~~~l~~l~~~-------~n~~l~~~ 600 (627)
.++.++.+.+. ++|..|+.
T Consensus 260 ~l~~L~~l~~~~~~~~~~~~~~~c~~ 285 (487)
T 3oja_A 260 KNQRVQTVAKQTVKKLTGQNEEECTV 285 (487)
T ss_dssp TCHHHHHHHHHHHHHHTSSSSCCCSS
T ss_pred hCCCCcEEeccccccccCCCcccccC
Confidence 34556666665 66666654
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.92 E-value=7.9e-24 Score=205.14 Aligned_cols=218 Identities=20% Similarity=0.229 Sum_probs=151.9
Q ss_pred CCCCCcccceeecCCCCcceecccccCCCCCCCEEECCCCCCcccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCC
Q 037951 44 RHFCEWEGITCDLRSKALSGLLSPQIGNLSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRL 123 (627)
Q Consensus 44 ~~~c~~~~~~c~l~~~~l~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L 123 (627)
.+.|.|.|+.|+... ..+++++++++++ .+|..+. +++++|++++|+++...+..|.++++|
T Consensus 2 ~~~C~~~~~~C~c~~---------------~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L 63 (270)
T 2o6q_A 2 EALCKKDGGVCSCNN---------------NKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKL 63 (270)
T ss_dssp CCCBGGGTCSBEEET---------------TTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTC
T ss_pred CccCCCCCCCCEeCC---------------CCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCC
Confidence 357999999884432 3567888888887 4665554 578888888888886666678888888
Q ss_pred CEEEccCccccccCCccccCCCCCCeeeCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCccCCCCCccEEEeeCc
Q 037951 124 TVLVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTGGIPPFLGNLTSLEVVSLAGNPFGGNIPDSLGQLKELKTLGIGGN 203 (627)
Q Consensus 124 ~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n 203 (627)
++|++++|.++...+..|..+++|++|++++|.+++..+..+.++++|++|++++|.+.+..+..+..+++|++|++++|
T Consensus 64 ~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 143 (270)
T 2o6q_A 64 RLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYN 143 (270)
T ss_dssp CEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCC
Confidence 88888888887555556677888888888888887666666777888888888888887766667777788888888888
Q ss_pred cccccCCccccCCCCCcEEEeecccCccCCChhhhhcCCCCceeccCCccccccCCccccCCCCCcEeecccccccccCc
Q 037951 204 NLSGSIPPSIYNLSFLVIFSVSENQMHGSLPPSLGLYFPNLKLFQTNENFFSGSIPISLSNASKLEYVEIASNSFFGKLS 283 (627)
Q Consensus 204 ~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 283 (627)
.+++..+..+..+++|+.|++++|.+.+..+ ..+..+++|+.|++++|.+.+..+
T Consensus 144 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-------------------------~~~~~l~~L~~L~L~~N~l~~~~~ 198 (270)
T 2o6q_A 144 ELQSLPKGVFDKLTSLKELRLYNNQLKRVPE-------------------------GAFDKLTELKTLKLDNNQLKRVPE 198 (270)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCSCCCT-------------------------TTTTTCTTCCEEECCSSCCSCCCT
T ss_pred cCCccCHhHccCCcccceeEecCCcCcEeCh-------------------------hHhccCCCcCEEECCCCcCCcCCH
Confidence 7775544556667777777777766653222 223445556666666665555555
Q ss_pred cCcCCCCCcCEEeccCccCCC
Q 037951 284 VNFGGMKNLSYLILEYNNLGS 304 (627)
Q Consensus 284 ~~l~~l~~L~~L~l~~n~l~~ 304 (627)
..+..+++|+.|++++|.+..
T Consensus 199 ~~~~~l~~L~~L~l~~N~~~c 219 (270)
T 2o6q_A 199 GAFDSLEKLKMLQLQENPWDC 219 (270)
T ss_dssp TTTTTCTTCCEEECCSSCBCC
T ss_pred HHhccccCCCEEEecCCCeeC
Confidence 555666666666666665543
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.7e-23 Score=224.23 Aligned_cols=265 Identities=29% Similarity=0.293 Sum_probs=147.5
Q ss_pred CCCCEEeCCCCcCcccCCccccCCCCCCEEEccCccccccCCccccCCCCCCeeeCCCCCCCCCCCCCCCCCCCCCEEEC
Q 037951 97 RRLETLLLSDNSLVGKIPANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTGGIPPFLGNLTSLEVVSL 176 (627)
Q Consensus 97 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 176 (627)
.++++|++++|.++ .+|..+. ++|++|++++|.++ .+|. .+++|++|++++|.++ .+|. .+++|++|++
T Consensus 40 ~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~L 108 (622)
T 3g06_A 40 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSI 108 (622)
T ss_dssp HCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEE
T ss_pred CCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEEC
Confidence 46899999999988 6777665 78999999999888 4554 5688888888888887 3454 6688888888
Q ss_pred CCCCCCCCCCCccCCCCCccEEEeeCccccccCCccccCCCCCcEEEeecccCccCCChhhhhcCCCCceeccCCccccc
Q 037951 177 AGNPFGGNIPDSLGQLKELKTLGIGGNNLSGSIPPSIYNLSFLVIFSVSENQMHGSLPPSLGLYFPNLKLFQTNENFFSG 256 (627)
Q Consensus 177 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~~~~~~ 256 (627)
++|.+++ +|. .+++|++|++++|.++. +|.. +++|+.|++++|.+.+ +|. .+
T Consensus 109 s~N~l~~-l~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~-l~~----~~--------------- 160 (622)
T 3g06_A 109 FSNPLTH-LPA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS-LPA----LP--------------- 160 (622)
T ss_dssp CSCCCCC-CCC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC----CC---------------
T ss_pred cCCcCCC-CCC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCC-cCC----cc---------------
Confidence 8888874 333 45778888888887763 4442 3566666666666552 221 12
Q ss_pred cCCccccCCCCCcEeecccccccccCccCcCCCCCcCEEeccCccCCCCCCCCccccccCCCCCcccEEEccCccccccc
Q 037951 257 SIPISLSNASKLEYVEIASNSFFGKLSVNFGGMKNLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGAL 336 (627)
Q Consensus 257 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~ 336 (627)
++|+.|++++|.+.+.. ..+++|+.|++++|.++.++. ..++|+.|++++|.++ .+
T Consensus 161 ---------~~L~~L~L~~N~l~~l~----~~~~~L~~L~Ls~N~l~~l~~----------~~~~L~~L~L~~N~l~-~l 216 (622)
T 3g06_A 161 ---------SELCKLWAYNNQLTSLP----MLPSGLQELSVSDNQLASLPT----------LPSELYKLWAYNNRLT-SL 216 (622)
T ss_dssp ---------TTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCSCCCC----------CCTTCCEEECCSSCCS-SC
T ss_pred ---------CCCCEEECCCCCCCCCc----ccCCCCcEEECCCCCCCCCCC----------ccchhhEEECcCCccc-cc
Confidence 33444444444443321 223445555555554443211 1234445555555444 22
Q ss_pred chhHHhccccccEEEeecccccccCcccccCCCCCCEEeCCCCccccccchhhcCCCCCcEeeccCCcccccCChhhhCC
Q 037951 337 PHSIANLSSQLQILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLGNL 416 (627)
Q Consensus 337 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~ 416 (627)
|.. .++|+.|++++|.+++ +| ..+++|+.|++++|.++ .+|. .+++|+.|++++|.++ .+|..+..+
T Consensus 217 ~~~----~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l 283 (622)
T 3g06_A 217 PAL----PSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHL 283 (622)
T ss_dssp CCC----CTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGS
T ss_pred CCC----CCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhc
Confidence 211 1244455555444442 22 22344555555555444 2222 2344555555555444 334444444
Q ss_pred CCCCEEEccCCccccccChhh
Q 037951 417 SSLYEIFLGDNNLSGVIPSSL 437 (627)
Q Consensus 417 ~~L~~L~l~~n~~~~~~~~~l 437 (627)
++|+.|++++|++++..+..+
T Consensus 284 ~~L~~L~L~~N~l~~~~~~~l 304 (622)
T 3g06_A 284 SSETTVNLEGNPLSERTLQAL 304 (622)
T ss_dssp CTTCEEECCSCCCCHHHHHHH
T ss_pred cccCEEEecCCCCCCcCHHHH
Confidence 555555555555444444333
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.4e-23 Score=204.32 Aligned_cols=207 Identities=19% Similarity=0.218 Sum_probs=117.2
Q ss_pred CCCEEeCCCCccccccchhhcCCCCCcEeeccCCcccccCChhhhCCCCCCEEEccCCccccccChhhcCCCCCCEEECc
Q 037951 370 NLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLGDNNLSGVIPSSLGNLERLAILEMF 449 (627)
Q Consensus 370 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~ 449 (627)
+|+.|++++|.+++..+..+..+++|+.|++++|.+.+..+..|..+++|++|++++|.+++..+..+..+++|++|+++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 108 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence 45555555555554444445555555555555555554444445555555555555555554444555555555555555
Q ss_pred CCcCcccCCccccccccCccEEEccCCccccC-CCccccCCCCCCEEEccCCcccccCCccccCCCCCC----EEECCCC
Q 037951 450 ANELSGTIPGDIFNISSLSVSLDLAENHFVGS-IPPRIGNLKALRCFDVSNNDLSGEIPSELGLCSSLE----EIYLAEN 524 (627)
Q Consensus 450 ~n~l~~~~~~~~~~~~~ll~~L~l~~n~l~~~-~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~----~L~L~~n 524 (627)
+|.+.+..+..+..++.+ ++|++++|.+.+. +|..+.++++|++|++++|++++..+..+..+++|+ +|++++|
T Consensus 109 ~n~l~~~~~~~~~~l~~L-~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n 187 (276)
T 2z62_A 109 ETNLASLENFPIGHLKTL-KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187 (276)
T ss_dssp TSCCCCSTTCCCTTCTTC-CEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSS
T ss_pred CCCccccCchhcccCCCC-CEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCC
Confidence 555553333344455555 5555555555542 355666666666667766666655455555555555 6667777
Q ss_pred cccccCChhccCCCCCCEEECCCCcCccccchhcccCc-CCeeeCcCCcccccCC
Q 037951 525 FFNGFIPSFFRTSRGIRKVDLSRNNFFGQIPIFLEALS-LEYLNLSFNDFEGRLP 578 (627)
Q Consensus 525 ~i~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~~~-L~~L~ls~n~l~~~~p 578 (627)
.+++..+..+.. .+|+.|++++|.+.+..+..+..++ |++|++++|++.+..|
T Consensus 188 ~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 188 PMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp CCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred cccccCccccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence 666554444433 3577777777776654444455555 7777777777666554
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.1e-23 Score=204.93 Aligned_cols=208 Identities=21% Similarity=0.212 Sum_probs=155.3
Q ss_pred cccEEEeecccccccCcccccCCCCCCEEeCCCCccccccchhhcCCCCCcEeeccCCcccccCChhhhCCCCCCEEEcc
Q 037951 346 QLQILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLG 425 (627)
Q Consensus 346 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~ 425 (627)
++++|++++|.+++..+..+.++++|+.|++++|.+++..+..+..+++|+.|++++|.+.+..+..|..+++|++|+++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 108 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence 56777777777766555567777777777777777776556667777777777777777776666677777777777777
Q ss_pred CCccccccChhhcCCCCCCEEECcCCcCcc-cCCccccccccCccEEEccCCccccCCCccccCCCCCC----EEEccCC
Q 037951 426 DNNLSGVIPSSLGNLERLAILEMFANELSG-TIPGDIFNISSLSVSLDLAENHFVGSIPPRIGNLKALR----CFDVSNN 500 (627)
Q Consensus 426 ~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~~~~~~~ll~~L~l~~n~l~~~~~~~l~~l~~L~----~L~Ls~n 500 (627)
+|.+.+..+..+..+++|++|++++|.+.+ .+|..+..++.+ ++|++++|++.+..+..+..+++|+ +|++++|
T Consensus 109 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L-~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n 187 (276)
T 2z62_A 109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNL-EHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187 (276)
T ss_dssp TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTC-CEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSS
T ss_pred CCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCC-CEEECCCCCCCcCCHHHhhhhhhccccceeeecCCC
Confidence 777776555567777777777777777764 256777777777 7788888877766666666555565 8999999
Q ss_pred cccccCCccccCCCCCCEEECCCCcccccCChhccCCCCCCEEECCCCcCccccc
Q 037951 501 DLSGEIPSELGLCSSLEEIYLAENFFNGFIPSFFRTSRGIRKVDLSRNNFFGQIP 555 (627)
Q Consensus 501 ~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~ls~n~l~~~~p 555 (627)
.+++..+..+. ..+|++|++++|.+++..+..+..+++|+.|++++|++....|
T Consensus 188 ~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 188 PMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp CCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred cccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence 99855454444 4589999999999998777778899999999999999986544
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.8e-22 Score=195.53 Aligned_cols=181 Identities=19% Similarity=0.228 Sum_probs=101.0
Q ss_pred CCCEEeCCCCccccccchhhcCCCCCcEeeccCCcccccCChhhhCCCCCCEEEccCCccccccChhhcCCCCCCEEECc
Q 037951 370 NLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLGDNNLSGVIPSSLGNLERLAILEMF 449 (627)
Q Consensus 370 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~ 449 (627)
+++.|++++|++++..+..+..+++|++|++++|.++...+..|..+++|++|++++|.+++..+..+..+++|+.|+++
T Consensus 38 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 117 (270)
T 2o6q_A 38 DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLD 117 (270)
T ss_dssp TCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECC
T ss_pred CCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECC
Confidence 45555555555544433445555555555555555553333344555555555555555554444444555555555555
Q ss_pred CCcCcccCCccccccccCccEEEccCCccccCCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEECCCCccccc
Q 037951 450 ANELSGTIPGDIFNISSLSVSLDLAENHFVGSIPPRIGNLKALRCFDVSNNDLSGEIPSELGLCSSLEEIYLAENFFNGF 529 (627)
Q Consensus 450 ~n~l~~~~~~~~~~~~~ll~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~ 529 (627)
+|.+.+..+..+..++++ ++|++++|.+.+..+..+..+++|++|++++|.+++..+..|..+++|++|++++|.+++.
T Consensus 118 ~n~l~~~~~~~~~~l~~L-~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 196 (270)
T 2o6q_A 118 RNQLKSLPPRVFDSLTKL-TYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRV 196 (270)
T ss_dssp SSCCCCCCTTTTTTCTTC-CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCccCeeCHHHhCcCcCC-CEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcC
Confidence 555543333334444444 4555555555444444456666677777777766644444566667777777777777665
Q ss_pred CChhccCCCCCCEEECCCCcCc
Q 037951 530 IPSFFRTSRGIRKVDLSRNNFF 551 (627)
Q Consensus 530 ~~~~l~~l~~L~~L~ls~n~l~ 551 (627)
.+..+..+++|+.|++++|++.
T Consensus 197 ~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 197 PEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp CTTTTTTCTTCCEEECCSSCBC
T ss_pred CHHHhccccCCCEEEecCCCee
Confidence 5555666677777777777664
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
Probab=99.89 E-value=2.9e-22 Score=195.73 Aligned_cols=198 Identities=20% Similarity=0.181 Sum_probs=103.4
Q ss_pred cccEEEeecccccccCcccccCCCCCCEEeCCCCccccccchhhcCCCCCcEeeccCCcccccCChhhhCCCCCCEEEcc
Q 037951 346 QLQILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLG 425 (627)
Q Consensus 346 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~ 425 (627)
++++++++++.++ .+|..+. ++++.|++++|.+++..+..+..+++|+.|++++|.+++..+ ...+++|++|+++
T Consensus 11 ~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~Ls 85 (290)
T 1p9a_G 11 SHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLGTLDLS 85 (290)
T ss_dssp TCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCCEEECC
T ss_pred CccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCCEEECC
Confidence 4556666666555 3333332 455666666666555555555556666666666665553222 1445556666666
Q ss_pred CCccccccChhhcCCCCCCEEECcCCcCcccCCccccccccCccEEEccCCccccCCCccccCCCCCCEEEccCCccccc
Q 037951 426 DNNLSGVIPSSLGNLERLAILEMFANELSGTIPGDIFNISSLSVSLDLAENHFVGSIPPRIGNLKALRCFDVSNNDLSGE 505 (627)
Q Consensus 426 ~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~ll~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ 505 (627)
+|.++ .+|..+..+++|++|++++|++.+..+..+..++.+ ++|++++|++.+..+..|..+++|++|++++|++++.
T Consensus 86 ~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L-~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l 163 (290)
T 1p9a_G 86 HNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGEL-QELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTEL 163 (290)
T ss_dssp SSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTC-CEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCC
T ss_pred CCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCC-CEEECCCCCCCccChhhcccccCCCEEECCCCcCCcc
Confidence 65555 344455555555555555555553333444455555 5555555555544444445555555555555555533
Q ss_pred CCccccCCCCCCEEECCCCcccccCChhccCCCCCCEEECCCCcCc
Q 037951 506 IPSELGLCSSLEEIYLAENFFNGFIPSFFRTSRGIRKVDLSRNNFF 551 (627)
Q Consensus 506 ~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~ls~n~l~ 551 (627)
.+..+..+++|+.|++++|.++ .+|..+....+|+.+++++|++.
T Consensus 164 ~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 164 PAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp CTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred CHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence 3333455555555555555555 33444444455555555555543
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
Probab=99.89 E-value=3.3e-22 Score=195.25 Aligned_cols=203 Identities=19% Similarity=0.232 Sum_probs=176.1
Q ss_pred ccCCCCCCEEeCCCCccccccchhhcCCCCCcEeeccCCcccccCChhhhCCCCCCEEEccCCccccccChhhcCCCCCC
Q 037951 365 IGNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLGDNNLSGVIPSSLGNLERLA 444 (627)
Q Consensus 365 ~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~ 444 (627)
+.+++++++++++++.++ .+|..+. ++++.|++++|.+++..+..|..+++|++|++++|.+++..+. ..+++|+
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~ 80 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLG 80 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCC
T ss_pred ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCC
Confidence 567889999999999998 5565553 6899999999999988888899999999999999999865442 7889999
Q ss_pred EEECcCCcCcccCCccccccccCccEEEccCCccccCCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEECCCC
Q 037951 445 ILEMFANELSGTIPGDIFNISSLSVSLDLAENHFVGSIPPRIGNLKALRCFDVSNNDLSGEIPSELGLCSSLEEIYLAEN 524 (627)
Q Consensus 445 ~L~l~~n~l~~~~~~~~~~~~~ll~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n 524 (627)
+|++++|.+. .+|..+..++.+ ++|++++|++.+..+..|..+++|++|++++|++++..+..|..+++|+.|++++|
T Consensus 81 ~L~Ls~N~l~-~l~~~~~~l~~L-~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 158 (290)
T 1p9a_G 81 TLDLSHNQLQ-SLPLLGQTLPAL-TVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158 (290)
T ss_dssp EEECCSSCCS-SCCCCTTTCTTC-CEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred EEECCCCcCC-cCchhhccCCCC-CEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCC
Confidence 9999999998 788888888888 89999999999877788999999999999999998666667889999999999999
Q ss_pred cccccCChhccCCCCCCEEECCCCcCccccchhcccCc-CCeeeCcCCcccc
Q 037951 525 FFNGFIPSFFRTSRGIRKVDLSRNNFFGQIPIFLEALS-LEYLNLSFNDFEG 575 (627)
Q Consensus 525 ~i~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~~~-L~~L~ls~n~l~~ 575 (627)
+++...+..|..+++|+.|++++|.+. .+|..+.... |+.+++++|++..
T Consensus 159 ~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 159 NLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred cCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccC
Confidence 999777777888999999999999998 6666655555 9999999999864
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
Probab=99.89 E-value=1.8e-22 Score=195.63 Aligned_cols=221 Identities=19% Similarity=0.250 Sum_probs=161.7
Q ss_pred ccEEEeecccccccCcccccCCCCCCEEeCCCCccccccchhhcCCCCCcEeeccCCcccccCChhhhCCCCCCEEEccC
Q 037951 347 LQILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLGD 426 (627)
Q Consensus 347 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~ 426 (627)
+..+++.++.+.+. .....+++|+.|++++|.++. + ..+..+++|+.|++++|.+.+. ..+..+++|++|++++
T Consensus 21 l~~l~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~ 94 (272)
T 3rfs_A 21 TIKANLKKKSVTDA--VTQNELNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTG 94 (272)
T ss_dssp HHHHHHTCSCTTSE--ECHHHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTT
T ss_pred HHHHHhcCcccccc--cccccccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCC
Confidence 33344444444322 223455667777777776652 2 2456677777777777777642 3566777777777777
Q ss_pred CccccccChhhcCCCCCCEEECcCCcCcccCCccccccccCccEEEccCCccccCCCccccCCCCCCEEEccCCcccccC
Q 037951 427 NNLSGVIPSSLGNLERLAILEMFANELSGTIPGDIFNISSLSVSLDLAENHFVGSIPPRIGNLKALRCFDVSNNDLSGEI 506 (627)
Q Consensus 427 n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~ll~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~ 506 (627)
|.+++..+..+..+++|++|++++|.+.+..+..+..++.+ ++|++++|.+.+..+..+..+++|++|++++|++++..
T Consensus 95 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L-~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 173 (272)
T 3rfs_A 95 NQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNL-TYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLP 173 (272)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC-CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred CccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCC-CEEECCCCccCccCHHHhccCccCCEEECCCCCcCccC
Confidence 77776666666777777777777777775555556667777 77888888777666666788899999999999998666
Q ss_pred CccccCCCCCCEEECCCCcccccCChhccCCCCCCEEECCCCcCccccchhcccCcCCeeeCcCCcccccCCCC
Q 037951 507 PSELGLCSSLEEIYLAENFFNGFIPSFFRTSRGIRKVDLSRNNFFGQIPIFLEALSLEYLNLSFNDFEGRLPTR 580 (627)
Q Consensus 507 ~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~~~L~~L~ls~n~l~~~~p~~ 580 (627)
+..++.+++|++|++++|.+++..+..+..+++|+.|++++|++.+..| .++.++++.|.+.|.+|..
T Consensus 174 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~------~l~~l~~~~n~~~g~ip~~ 241 (272)
T 3rfs_A 174 EGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP------GIRYLSEWINKHSGVVRNS 241 (272)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT------TTHHHHHHHHHTGGGBBCT
T ss_pred HHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccCc------HHHHHHHHHHhCCCcccCc
Confidence 6678889999999999999998888888899999999999998875544 3788899999999998853
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
Probab=99.89 E-value=2.9e-22 Score=194.21 Aligned_cols=211 Identities=22% Similarity=0.222 Sum_probs=162.9
Q ss_pred cCCCCCCCEEECCCCCCcccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEEccCccccccCCccccCCCCCC
Q 037951 69 IGNLSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLK 148 (627)
Q Consensus 69 l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~ 148 (627)
+..+++|+.|+++++.+.. + ..+..+++|++|++++|.+++ + ..+..+++|++|++++|.+++..+..+..+++|+
T Consensus 37 ~~~l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 112 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLK 112 (272)
T ss_dssp HHHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred cccccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCC
Confidence 4456788888888888763 3 347788888888888888874 3 3688888888888888888877777788888888
Q ss_pred eeeCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCccCCCCCccEEEeeCccccccCCccccCCCCCcEEEeeccc
Q 037951 149 QLALPMNNLTGGIPPFLGNLTSLEVVSLAGNPFGGNIPDSLGQLKELKTLGIGGNNLSGSIPPSIYNLSFLVIFSVSENQ 228 (627)
Q Consensus 149 ~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~ 228 (627)
+|++++|.+++..+..+.++++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.
T Consensus 113 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 192 (272)
T 3rfs_A 113 ELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQ 192 (272)
T ss_dssp EEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCc
Confidence 88888888887777778888888888888888887666677888888888888888886666667888888888888888
Q ss_pred CccCCChhhhhcCCCCceeccCCccccccCCccccCCCCCcEeecccccccccCccCcCCCCC
Q 037951 229 MHGSLPPSLGLYFPNLKLFQTNENFFSGSIPISLSNASKLEYVEIASNSFFGKLSVNFGGMKN 291 (627)
Q Consensus 229 l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~ 291 (627)
+.+..+..+. .+++|+.|++++|.+.+ .+++++.++++.|.+.+.+|..++.++.
T Consensus 193 l~~~~~~~~~-~l~~L~~L~l~~N~~~~-------~~~~l~~l~~~~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 193 LKSVPDGVFD-RLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSVAP 247 (272)
T ss_dssp CSCCCTTTTT-TCTTCCEEECCSSCBCC-------CTTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred CCccCHHHHh-CCcCCCEEEccCCCccc-------cCcHHHHHHHHHHhCCCcccCcccccCC
Confidence 8865444333 37788888888886653 3556778888888888777776665443
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=99.88 E-value=7e-23 Score=205.72 Aligned_cols=251 Identities=16% Similarity=0.166 Sum_probs=193.1
Q ss_pred cccEEEccCcccccccchhHHhc-cccccEEEeecccccccCcccccCCCCCCEEeCCCCccccc-cchhhcCCCCCcEe
Q 037951 321 KLQVLSLGGNQFRGALPHSIANL-SSQLQILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGS-IPKEMGKLLNLQGL 398 (627)
Q Consensus 321 ~L~~L~l~~n~~~~~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~-~~~~~~~l~~L~~L 398 (627)
.++.++++++.+. +..+... .+.++.|++++|.+.+..+. +..+++|++|++++|.+++. ++..+..+++|+.|
T Consensus 48 ~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L 123 (336)
T 2ast_B 48 LWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL 123 (336)
T ss_dssp TSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred hheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEE
Confidence 3667777777665 3334433 13788888888888766555 55788999999999988755 77778889999999
Q ss_pred eccCCcccccCChhhhCCCCCCEEEccCC-ccccc-cChhhcCCCCCCEEECcCC-cCccc-CCccccccc-cCccEEEc
Q 037951 399 DFGGNHFSGEIPSTLGNLSSLYEIFLGDN-NLSGV-IPSSLGNLERLAILEMFAN-ELSGT-IPGDIFNIS-SLSVSLDL 473 (627)
Q Consensus 399 ~L~~n~~~~~~~~~~~~~~~L~~L~l~~n-~~~~~-~~~~l~~l~~L~~L~l~~n-~l~~~-~~~~~~~~~-~ll~~L~l 473 (627)
++++|.+++..+..+..+++|++|++++| .+++. ++..+..+++|++|++++| .+.+. ++..+..++ .+ ++|++
T Consensus 124 ~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L-~~L~l 202 (336)
T 2ast_B 124 SLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETI-TQLNL 202 (336)
T ss_dssp ECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTC-CEEEC
T ss_pred eCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCC-CEEEe
Confidence 99999888777788888999999999999 57653 5666788899999999999 77753 566677777 77 89999
Q ss_pred cCCc--cc-cCCCccccCCCCCCEEEccCCc-ccccCCccccCCCCCCEEECCCCc-ccccCChhccCCCCCCEEECCCC
Q 037951 474 AENH--FV-GSIPPRIGNLKALRCFDVSNND-LSGEIPSELGLCSSLEEIYLAENF-FNGFIPSFFRTSRGIRKVDLSRN 548 (627)
Q Consensus 474 ~~n~--l~-~~~~~~l~~l~~L~~L~Ls~n~-l~~~~~~~l~~l~~L~~L~L~~n~-i~~~~~~~l~~l~~L~~L~ls~n 548 (627)
++|. +. +.++..+.++++|++|++++|. +++..+..+..+++|++|++++|. ++......+..+++|+.|++++|
T Consensus 203 ~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 203 SGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp CSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred CCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 9994 44 3455667789999999999999 777778889999999999999995 43333346788999999999999
Q ss_pred cCccccchhcccC-c-CCeeeCcCCcccccCCCC
Q 037951 549 NFFGQIPIFLEAL-S-LEYLNLSFNDFEGRLPTR 580 (627)
Q Consensus 549 ~l~~~~p~~~~~~-~-L~~L~ls~n~l~~~~p~~ 580 (627)
+.. ..+... . +..|++++|.+++..|..
T Consensus 283 -i~~---~~~~~l~~~l~~L~l~~n~l~~~~~~~ 312 (336)
T 2ast_B 283 -VPD---GTLQLLKEALPHLQINCSHFTTIARPT 312 (336)
T ss_dssp -SCT---TCHHHHHHHSTTSEESCCCSCCTTCSS
T ss_pred -cCH---HHHHHHHhhCcceEEecccCccccCCc
Confidence 332 123333 3 888999999999988853
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
Probab=99.88 E-value=1.1e-23 Score=215.55 Aligned_cols=188 Identities=18% Similarity=0.256 Sum_probs=100.3
Q ss_pred cCCCCCcEeeccCCcccc----cCChhhhCCCCCCEEEccCCccccccChhhc----CC---------CCCCEEECcCCc
Q 037951 390 GKLLNLQGLDFGGNHFSG----EIPSTLGNLSSLYEIFLGDNNLSGVIPSSLG----NL---------ERLAILEMFANE 452 (627)
Q Consensus 390 ~~l~~L~~L~L~~n~~~~----~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~----~l---------~~L~~L~l~~n~ 452 (627)
..+++|+.|++++|.+.+ .++..+..+++|++|++++|.++...+..+. .+ ++|++|++++|+
T Consensus 91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~ 170 (386)
T 2ca6_A 91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR 170 (386)
T ss_dssp TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC
T ss_pred hhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC
Confidence 344555555555555543 2333444455555555555555432222222 22 455555555555
Q ss_pred Cc-ccCC---ccccccccCccEEEccCCcccc-----CCCccccCCCCCCEEEccCCccc----ccCCccccCCCCCCEE
Q 037951 453 LS-GTIP---GDIFNISSLSVSLDLAENHFVG-----SIPPRIGNLKALRCFDVSNNDLS----GEIPSELGLCSSLEEI 519 (627)
Q Consensus 453 l~-~~~~---~~~~~~~~ll~~L~l~~n~l~~-----~~~~~l~~l~~L~~L~Ls~n~l~----~~~~~~l~~l~~L~~L 519 (627)
+. +.++ ..+..++.+ ++|++++|++.. ..+..+..+++|++|++++|.++ ..+|..+..+++|++|
T Consensus 171 l~~~~~~~l~~~l~~~~~L-~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L 249 (386)
T 2ca6_A 171 LENGSMKEWAKTFQSHRLL-HTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLREL 249 (386)
T ss_dssp CTGGGHHHHHHHHHHCTTC-CEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEE
T ss_pred CCcHHHHHHHHHHHhCCCc-CEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEE
Confidence 54 2222 233344444 555555555541 12224556666777777777664 3456666666677777
Q ss_pred ECCCCccccc----CChhccC--CCCCCEEECCCCcCcc----ccchhc-ccCc-CCeeeCcCCcccccCC
Q 037951 520 YLAENFFNGF----IPSFFRT--SRGIRKVDLSRNNFFG----QIPIFL-EALS-LEYLNLSFNDFEGRLP 578 (627)
Q Consensus 520 ~L~~n~i~~~----~~~~l~~--l~~L~~L~ls~n~l~~----~~p~~~-~~~~-L~~L~ls~n~l~~~~p 578 (627)
+|++|.+++. ++..+.. +++|+.|++++|.+.+ .+|..+ ..++ |++|++++|++.+..|
T Consensus 250 ~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 250 GLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp ECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred ECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 7777766654 3444433 6667777777776665 355555 3334 7777777776665443
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
Probab=99.88 E-value=1.6e-21 Score=186.64 Aligned_cols=184 Identities=24% Similarity=0.227 Sum_probs=135.8
Q ss_pred CCCccccee-------ecCCCCcceecccccCCCCCCCEEECCCCCCcccCCcccCCCCCCCEEeCCCCcCcccCCcccc
Q 037951 46 FCEWEGITC-------DLRSKALSGLLSPQIGNLSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPANLS 118 (627)
Q Consensus 46 ~c~~~~~~c-------~l~~~~l~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~ 118 (627)
|+.|.|..| +++++.++.. |..+. +++++|++++|.+.+..+..|.++++|++|++++|.+++..+..|.
T Consensus 4 Cp~~~gC~C~~~~~~l~~~~~~l~~~-p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 80 (251)
T 3m19_A 4 CETVTGCTCNEGKKEVDCQGKSLDSV-PSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFD 80 (251)
T ss_dssp CHHHHSSEEEGGGTEEECTTCCCSSC-CSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTT
T ss_pred CCCCCceEcCCCCeEEecCCCCcccc-CCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhc
Confidence 456666666 4566666543 33333 5778888888888776677778888888888888888777777777
Q ss_pred CCCCCCEEEccCccccccCCccccCCCCCCeeeCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCccCCCCCccEE
Q 037951 119 YCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTGGIPPFLGNLTSLEVVSLAGNPFGGNIPDSLGQLKELKTL 198 (627)
Q Consensus 119 ~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L 198 (627)
++++|++|++++|+++...+..|..+++|++|++++|.+++..+..+.++++|++|++++|.+++..+..+..+++|++|
T Consensus 81 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 160 (251)
T 3m19_A 81 DLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTL 160 (251)
T ss_dssp TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEE
Confidence 88888888888888876666777778888888888888876666667778888888888888876666677777888888
Q ss_pred EeeCccccccCCccccCCCCCcEEEeecccCccC
Q 037951 199 GIGGNNLSGSIPPSIYNLSFLVIFSVSENQMHGS 232 (627)
Q Consensus 199 ~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~ 232 (627)
++++|.+++..+..+..+++|+.|++++|.+.+.
T Consensus 161 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 161 SLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp ECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred ECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 8888887766666777777788888887777644
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
Probab=99.88 E-value=7.8e-24 Score=216.77 Aligned_cols=189 Identities=17% Similarity=0.221 Sum_probs=138.6
Q ss_pred cCCCCCCEEeCCCCcccc----ccchhhcCCCCCcEeeccCCcccccCChhh----hCC---------CCCCEEEccCCc
Q 037951 366 GNLVNLYSLQTEENQFTG----SIPKEMGKLLNLQGLDFGGNHFSGEIPSTL----GNL---------SSLYEIFLGDNN 428 (627)
Q Consensus 366 ~~l~~L~~L~l~~n~~~~----~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~----~~~---------~~L~~L~l~~n~ 428 (627)
..+++|++|++++|.++. .++..+..+++|+.|++++|.++...+..+ ..+ ++|++|++++|.
T Consensus 91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~ 170 (386)
T 2ca6_A 91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR 170 (386)
T ss_dssp TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC
T ss_pred hhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC
Confidence 567777777777777775 356667777778888888877764333333 223 788888888887
Q ss_pred cc-cccC---hhhcCCCCCCEEECcCCcCcc-----cCCccccccccCccEEEccCCccc----cCCCccccCCCCCCEE
Q 037951 429 LS-GVIP---SSLGNLERLAILEMFANELSG-----TIPGDIFNISSLSVSLDLAENHFV----GSIPPRIGNLKALRCF 495 (627)
Q Consensus 429 ~~-~~~~---~~l~~l~~L~~L~l~~n~l~~-----~~~~~~~~~~~ll~~L~l~~n~l~----~~~~~~l~~l~~L~~L 495 (627)
++ ...+ ..+..+++|+.|++++|.+.. ..+..+..++.+ ++|++++|.+. +.+|..+..+++|++|
T Consensus 171 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L-~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L 249 (386)
T 2ca6_A 171 LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQEL-KVLDLQDNTFTHLGSSALAIALKSWPNLREL 249 (386)
T ss_dssp CTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTC-CEEECCSSCCHHHHHHHHHHHGGGCTTCCEE
T ss_pred CCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCc-cEEECcCCCCCcHHHHHHHHHHccCCCcCEE
Confidence 76 2333 356677788888888887762 223356667777 78888888875 4566778888999999
Q ss_pred EccCCccccc----CCccccC--CCCCCEEECCCCcccc----cCChhc-cCCCCCCEEECCCCcCccccc
Q 037951 496 DVSNNDLSGE----IPSELGL--CSSLEEIYLAENFFNG----FIPSFF-RTSRGIRKVDLSRNNFFGQIP 555 (627)
Q Consensus 496 ~Ls~n~l~~~----~~~~l~~--l~~L~~L~L~~n~i~~----~~~~~l-~~l~~L~~L~ls~n~l~~~~p 555 (627)
++++|.+++. ++..+.. +++|++|+|++|.+++ .+|..+ .++++|+.|++++|++.+..+
T Consensus 250 ~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 250 GLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp ECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred ECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 9999998855 5566643 8999999999999998 477776 568999999999999987664
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.87 E-value=4.3e-23 Score=209.03 Aligned_cols=229 Identities=17% Similarity=0.192 Sum_probs=105.9
Q ss_pred ccEEEeecccccccCc----ccccCCC-CCCEEeCCCCccccccchhhcCC-----CCCcEeeccCCcccccCChh----
Q 037951 347 LQILVLGTNQLYGSIP----SGIGNLV-NLYSLQTEENQFTGSIPKEMGKL-----LNLQGLDFGGNHFSGEIPST---- 412 (627)
Q Consensus 347 L~~L~l~~n~l~~~~~----~~~~~l~-~L~~L~l~~n~~~~~~~~~~~~l-----~~L~~L~L~~n~~~~~~~~~---- 412 (627)
|++|++++|.+++..+ ..+..++ +|++|++++|.+++..+..+..+ ++|+.|++++|.+++..+..
T Consensus 24 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~ 103 (362)
T 3goz_A 24 VTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKT 103 (362)
T ss_dssp CCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHH
T ss_pred ceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHH
Confidence 4444444444443333 3334444 45555555555444333333332 45555555555554333332
Q ss_pred hhCC-CCCCEEEccCCccccccChhhc----C-CCCCCEEECcCCcCcccCC----ccccccc-cCccEEEccCCccccC
Q 037951 413 LGNL-SSLYEIFLGDNNLSGVIPSSLG----N-LERLAILEMFANELSGTIP----GDIFNIS-SLSVSLDLAENHFVGS 481 (627)
Q Consensus 413 ~~~~-~~L~~L~l~~n~~~~~~~~~l~----~-l~~L~~L~l~~n~l~~~~~----~~~~~~~-~ll~~L~l~~n~l~~~ 481 (627)
+..+ ++|++|++++|.+++..+..+. . .++|++|++++|.+.+... ..+.... .+ ++|++++|++.+.
T Consensus 104 l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L-~~L~Ls~n~l~~~ 182 (362)
T 3goz_A 104 LAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANV-NSLNLRGNNLASK 182 (362)
T ss_dssp HHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTC-CEEECTTSCGGGS
T ss_pred HHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccc-cEeeecCCCCchh
Confidence 2222 4555555555555433332221 2 2355555555555543221 1112222 33 5555555555544
Q ss_pred CCcc----ccCC-CCCCEEEccCCccccc----CCccccC-CCCCCEEECCCCcccccCC----hhccCCCCCCEEECCC
Q 037951 482 IPPR----IGNL-KALRCFDVSNNDLSGE----IPSELGL-CSSLEEIYLAENFFNGFIP----SFFRTSRGIRKVDLSR 547 (627)
Q Consensus 482 ~~~~----l~~l-~~L~~L~Ls~n~l~~~----~~~~l~~-l~~L~~L~L~~n~i~~~~~----~~l~~l~~L~~L~ls~ 547 (627)
.+.. +..+ ++|++|++++|.+++. ++..+.. .++|++|++++|.+++..+ ..+..+++|+.|++++
T Consensus 183 ~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~ 262 (362)
T 3goz_A 183 NCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDY 262 (362)
T ss_dssp CHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEH
T ss_pred hHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEecc
Confidence 3322 2233 3666666666666531 3334433 3466666666666655433 2234556666666666
Q ss_pred CcCcc-------ccchhcccCc-CCeeeCcCCccccc
Q 037951 548 NNFFG-------QIPIFLEALS-LEYLNLSFNDFEGR 576 (627)
Q Consensus 548 n~l~~-------~~p~~~~~~~-L~~L~ls~n~l~~~ 576 (627)
|.+.+ .++..+...+ |+.||+++|++.+.
T Consensus 263 n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 263 DIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp HHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred CCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 65322 1222333444 66666666666544
|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=7.1e-22 Score=195.55 Aligned_cols=224 Identities=20% Similarity=0.216 Sum_probs=141.6
Q ss_pred CcccEEEccCcccccccchh---HHhccccccEEEeecccccccCcccc--cCCCCCCEEeCCCCccccccc----hhhc
Q 037951 320 SKLQVLSLGGNQFRGALPHS---IANLSSQLQILVLGTNQLYGSIPSGI--GNLVNLYSLQTEENQFTGSIP----KEMG 390 (627)
Q Consensus 320 ~~L~~L~l~~n~~~~~~~~~---~~~~~~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~~~~~~~----~~~~ 390 (627)
..++.+.+.++.++...... +.... +|++|++++|.+.+..|..+ ..+++|++|++++|.+++..+ ..+.
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~ 142 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYS-RLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW 142 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHS-CCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccC-ceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh
Confidence 45777888777665321111 11222 68899999998888888777 788888888888888876443 3345
Q ss_pred CCCCCcEeeccCCcccccCChhhhCCCCCCEEEccCCccccc--c--ChhhcCCCCCCEEECcCCcCcccCCcc----cc
Q 037951 391 KLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLGDNNLSGV--I--PSSLGNLERLAILEMFANELSGTIPGD----IF 462 (627)
Q Consensus 391 ~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~--~--~~~l~~l~~L~~L~l~~n~l~~~~~~~----~~ 462 (627)
.+++|+.|++++|.+.+..+..+..+++|++|++++|++.+. . +..+..+++|++|++++|.+. .++.. +.
T Consensus 143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~ 221 (310)
T 4glp_A 143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAA 221 (310)
T ss_dssp BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHH
T ss_pred hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHh
Confidence 678888888888888877777788888888888888886542 1 222356777888888887775 22221 23
Q ss_pred ccccCccEEEccCCccccCCCccccCC---CCCCEEEccCCcccccCCccccCCCCCCEEECCCCcccccCChhccCCCC
Q 037951 463 NISSLSVSLDLAENHFVGSIPPRIGNL---KALRCFDVSNNDLSGEIPSELGLCSSLEEIYLAENFFNGFIPSFFRTSRG 539 (627)
Q Consensus 463 ~~~~ll~~L~l~~n~l~~~~~~~l~~l---~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~ 539 (627)
.+..+ ++|++++|++.+..|..+..+ ++|++|++++|+++ .+|..+. ++|++|++++|++++. |. +..+++
T Consensus 222 ~l~~L-~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~ 295 (310)
T 4glp_A 222 AGVQP-HSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPE 295 (310)
T ss_dssp HTCCC-SSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCC
T ss_pred cCCCC-CEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCC
Confidence 34455 566666666655545444444 45666666666665 4454443 4566666666655543 22 344555
Q ss_pred CCEEECCCCcCc
Q 037951 540 IRKVDLSRNNFF 551 (627)
Q Consensus 540 L~~L~ls~n~l~ 551 (627)
|+.|++++|+++
T Consensus 296 L~~L~L~~N~l~ 307 (310)
T 4glp_A 296 VDNLTLDGNPFL 307 (310)
T ss_dssp CSCEECSSTTTS
T ss_pred ccEEECcCCCCC
Confidence 555555555554
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.1e-22 Score=205.89 Aligned_cols=263 Identities=16% Similarity=0.172 Sum_probs=151.0
Q ss_pred EeecccccccccCccCcCCCCCcCEEeccCccCCCCCCCCccccccCCCCC-cccEEEccCcccccccchhHHhc----c
Q 037951 270 YVEIASNSFFGKLSVNFGGMKNLSYLILEYNNLGSGESDEMGFMNSLANCS-KLQVLSLGGNQFRGALPHSIANL----S 344 (627)
Q Consensus 270 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~-~L~~L~l~~n~~~~~~~~~~~~~----~ 344 (627)
.++++.|.+.+.++..+...++|++|++++|.++..... .+...+..++ +|++|++++|.+++..+..+... .
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~--~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~ 79 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTV--ELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIP 79 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHH--HHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSC
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHH--HHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccC
Confidence 356777777777776666666688888888877764321 2224566666 78888888887776666666554 1
Q ss_pred ccccEEEeecccccccCcccc----cCC-CCCCEEeCCCCccccccchhh----cC-CCCCcEeeccCCcccccCC----
Q 037951 345 SQLQILVLGTNQLYGSIPSGI----GNL-VNLYSLQTEENQFTGSIPKEM----GK-LLNLQGLDFGGNHFSGEIP---- 410 (627)
Q Consensus 345 ~~L~~L~l~~n~l~~~~~~~~----~~l-~~L~~L~l~~n~~~~~~~~~~----~~-l~~L~~L~L~~n~~~~~~~---- 410 (627)
++|++|++++|.+++..+..+ ..+ ++|+.|++++|.+++..+..+ .. .++|+.|++++|.+++...
T Consensus 80 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~ 159 (362)
T 3goz_A 80 ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELI 159 (362)
T ss_dssp TTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHH
T ss_pred CCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHH
Confidence 367777777776665444422 223 566666666666654443332 22 2456666666666553222
Q ss_pred hhhhCCC-CCCEEEccCCccccccChhh----cCC-CCCCEEECcCCcCcccCCccccccccCccEEEccCCccccCCCc
Q 037951 411 STLGNLS-SLYEIFLGDNNLSGVIPSSL----GNL-ERLAILEMFANELSGTIPGDIFNISSLSVSLDLAENHFVGSIPP 484 (627)
Q Consensus 411 ~~~~~~~-~L~~L~l~~n~~~~~~~~~l----~~l-~~L~~L~l~~n~l~~~~~~~~~~~~~ll~~L~l~~n~l~~~~~~ 484 (627)
..+..++ +|++|++++|.+++..+..+ ..+ ++|++|++++|.+.+.... .++.
T Consensus 160 ~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~---------------------~l~~ 218 (362)
T 3goz_A 160 QILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYA---------------------ELAY 218 (362)
T ss_dssp HHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHH---------------------HHHH
T ss_pred HHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHH---------------------HHHH
Confidence 2223333 55666666655554433222 222 3555555555544421100 1222
Q ss_pred cccC-CCCCCEEEccCCcccccCC----ccccCCCCCCEEECCCCccccc-------CChhccCCCCCCEEECCCCcCcc
Q 037951 485 RIGN-LKALRCFDVSNNDLSGEIP----SELGLCSSLEEIYLAENFFNGF-------IPSFFRTSRGIRKVDLSRNNFFG 552 (627)
Q Consensus 485 ~l~~-l~~L~~L~Ls~n~l~~~~~----~~l~~l~~L~~L~L~~n~i~~~-------~~~~l~~l~~L~~L~ls~n~l~~ 552 (627)
.+.. .++|++|++++|.+++..+ ..+..+++|++|++++|.+... ++..+..+++|+.||+++|.+..
T Consensus 219 ~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~ 298 (362)
T 3goz_A 219 IFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHP 298 (362)
T ss_dssp HHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCG
T ss_pred HHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCC
Confidence 3333 3477777777777764333 2345667788888888874433 23456677888888888888876
Q ss_pred ccc
Q 037951 553 QIP 555 (627)
Q Consensus 553 ~~p 555 (627)
..+
T Consensus 299 ~~~ 301 (362)
T 3goz_A 299 SHS 301 (362)
T ss_dssp GGC
T ss_pred cch
Confidence 544
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
Probab=99.86 E-value=4.6e-21 Score=183.44 Aligned_cols=159 Identities=18% Similarity=0.210 Sum_probs=94.9
Q ss_pred CCcEeeccCCcccccCChhhhCCCCCCEEEccCCccccccChhhcCCCCCCEEECcCCcCcccCCccccccccCccEEEc
Q 037951 394 NLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLGDNNLSGVIPSSLGNLERLAILEMFANELSGTIPGDIFNISSLSVSLDL 473 (627)
Q Consensus 394 ~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~ll~~L~l 473 (627)
+++.|++++|.+.+..+..|..+++|++|++++|.+++..+..+..+++|+.|++++|.+.+..+..+..++.+ ++|++
T Consensus 36 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L-~~L~L 114 (251)
T 3m19_A 36 DTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQL-DKLYL 114 (251)
T ss_dssp TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC-CEEEC
T ss_pred CCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCC-CEEEc
Confidence 34444444444443333344444444444444444444434444444444444444444443222333344444 45555
Q ss_pred cCCccccCCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEECCCCcccccCChhccCCCCCCEEECCCCcCccc
Q 037951 474 AENHFVGSIPPRIGNLKALRCFDVSNNDLSGEIPSELGLCSSLEEIYLAENFFNGFIPSFFRTSRGIRKVDLSRNNFFGQ 553 (627)
Q Consensus 474 ~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~ls~n~l~~~ 553 (627)
++|++.+..+..+..+++|++|++++|++++..+..++.+++|++|++++|.+++..+..+..+++|+.|++++|++...
T Consensus 115 ~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 115 GGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred CCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 55555544445567778888888888888755555688888888888888888877777788888888888888888754
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.8e-21 Score=185.00 Aligned_cols=177 Identities=18% Similarity=0.229 Sum_probs=87.0
Q ss_pred CCCEEeCCCCccccccchhhcCCCCCcEeeccCCc-ccccCChhhhCCCCCCEEEccC-CccccccChhhcCCCCCCEEE
Q 037951 370 NLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNH-FSGEIPSTLGNLSSLYEIFLGD-NNLSGVIPSSLGNLERLAILE 447 (627)
Q Consensus 370 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~-~~~~~~~~~~~~~~L~~L~l~~-n~~~~~~~~~l~~l~~L~~L~ 447 (627)
+|+.|++++|++++..+..+..+++|+.|++++|+ ++...+..|..+++|++|++++ |.+++..+..|..+++|+.|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 45555555555554444445555555555555554 4433334455555555555555 555544444555555555555
Q ss_pred CcCCcCcccCCccccccccCcc---EEEccCC-ccccCCCccccCCCCCC-EEEccCCcccccCCc-cccCCCCCCEEEC
Q 037951 448 MFANELSGTIPGDIFNISSLSV---SLDLAEN-HFVGSIPPRIGNLKALR-CFDVSNNDLSGEIPS-ELGLCSSLEEIYL 521 (627)
Q Consensus 448 l~~n~l~~~~~~~~~~~~~ll~---~L~l~~n-~l~~~~~~~l~~l~~L~-~L~Ls~n~l~~~~~~-~l~~l~~L~~L~L 521 (627)
+++|.+.+ +|. +..+.++ + +|++++| .+.+..+..|..+++|+ +|++++|+++ .+|. .+.. ++|++|++
T Consensus 112 l~~n~l~~-lp~-~~~l~~L-~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~-~~L~~L~L 186 (239)
T 2xwt_C 112 IFNTGLKM-FPD-LTKVYST-DIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNG-TKLDAVYL 186 (239)
T ss_dssp EEEECCCS-CCC-CTTCCBC-CSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTT-CEEEEEEC
T ss_pred CCCCCCcc-ccc-ccccccc-ccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCC-CCCCEEEc
Confidence 55555542 333 3333333 3 4444444 44433333444555555 5555555554 3332 2222 45555555
Q ss_pred CCCc-ccccCChhccCC-CCCCEEECCCCcCc
Q 037951 522 AENF-FNGFIPSFFRTS-RGIRKVDLSRNNFF 551 (627)
Q Consensus 522 ~~n~-i~~~~~~~l~~l-~~L~~L~ls~n~l~ 551 (627)
++|. ++...+..|..+ ++|+.|++++|.+.
T Consensus 187 ~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~ 218 (239)
T 2xwt_C 187 NKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT 218 (239)
T ss_dssp TTCTTCCEECTTTTTTCSBCCSEEECTTCCCC
T ss_pred CCCCCcccCCHHHhhccccCCcEEECCCCccc
Confidence 5552 544444444444 55555555555554
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
Probab=99.86 E-value=2.8e-21 Score=183.64 Aligned_cols=197 Identities=17% Similarity=0.169 Sum_probs=141.3
Q ss_pred CCCCEEECCCCCCcccCCcccCCCCCCCEEeCCCCc-CcccCCccccCCCCCCEEEccC-ccccccCCccccCCCCCCee
Q 037951 73 SFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNS-LVGKIPANLSYCSRLTVLVLGN-NKLVGSIPFEFVSLYKLKQL 150 (627)
Q Consensus 73 ~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~ls~-n~l~~~~~~~l~~l~~L~~L 150 (627)
.++++|++++|++++..+..|.++++|++|++++|+ ++...+..|.++++|++|++++ |+++...+..|.++++|++|
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 388999999999987777788889999999999996 8766666888999999999998 88887667788888888888
Q ss_pred eCCCCCCCCCCCCCCCCCCCCC---EEECCCC-CCCCCCCCccCCCCCcc-EEEeeCccccccCCccccCCCCCcEEEee
Q 037951 151 ALPMNNLTGGIPPFLGNLTSLE---VVSLAGN-PFGGNIPDSLGQLKELK-TLGIGGNNLSGSIPPSIYNLSFLVIFSVS 225 (627)
Q Consensus 151 ~l~~n~l~~~~~~~l~~l~~L~---~L~L~~n-~~~~~~~~~l~~l~~L~-~L~l~~n~~~~~~~~~l~~l~~L~~L~l~ 225 (627)
++++|.+++ +|. +..+++|+ +|++++| .+++..+..|..+++|+ +|++++|.++ .+|......++|+.|+++
T Consensus 111 ~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~ 187 (239)
T 2xwt_C 111 GIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLN 187 (239)
T ss_dssp EEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEEEEEECT
T ss_pred eCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcC
Confidence 888888875 555 77777777 8888888 77766566677777777 7777777776 444333222556666666
Q ss_pred ccc-CccCCChhhhhcCCCCceeccCCccccccCCccccCC-CCCcEeecccccccccCccCcCCCCCcCEEeccCc
Q 037951 226 ENQ-MHGSLPPSLGLYFPNLKLFQTNENFFSGSIPISLSNA-SKLEYVEIASNSFFGKLSVNFGGMKNLSYLILEYN 300 (627)
Q Consensus 226 ~n~-l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n 300 (627)
+|. +. +..+..+..+ ++|+.+++++|.+.+..+. .+++|+.|+++++
T Consensus 188 ~n~~l~-------------------------~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 188 KNKYLT-------------------------VIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNT 236 (239)
T ss_dssp TCTTCC-------------------------EECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC
T ss_pred CCCCcc-------------------------cCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCc
Confidence 663 44 3333344555 6666666666666543332 4566666666554
|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=6.2e-22 Score=195.98 Aligned_cols=223 Identities=15% Similarity=0.157 Sum_probs=118.3
Q ss_pred cccEEEeecccccccCcc---cccCCCCCCEEeCCCCccccccchhh--cCCCCCcEeeccCCcccccCC----hhhhCC
Q 037951 346 QLQILVLGTNQLYGSIPS---GIGNLVNLYSLQTEENQFTGSIPKEM--GKLLNLQGLDFGGNHFSGEIP----STLGNL 416 (627)
Q Consensus 346 ~L~~L~l~~n~l~~~~~~---~~~~l~~L~~L~l~~n~~~~~~~~~~--~~l~~L~~L~L~~n~~~~~~~----~~~~~~ 416 (627)
.++.+.+.++.+...... .+..+++|++|++++|.+++..|..+ ..+++|+.|++++|.+.+..+ ..+..+
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 144 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK 144 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence 466666666655421100 11223557777777777766666665 666777777777777665433 223456
Q ss_pred CCCCEEEccCCccccccChhhcCCCCCCEEECcCCcCccc--CCccccccccCccEEEccCCccccCCCccccCCCCCCE
Q 037951 417 SSLYEIFLGDNNLSGVIPSSLGNLERLAILEMFANELSGT--IPGDIFNISSLSVSLDLAENHFVGSIPPRIGNLKALRC 494 (627)
Q Consensus 417 ~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~--~~~~~~~~~~ll~~L~l~~n~l~~~~~~~l~~l~~L~~ 494 (627)
++|++|++++|.+.+..+..+..+++|++|++++|++.+. ++. +..+..+++|++
T Consensus 145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~-----------------------~~~~~~l~~L~~ 201 (310)
T 4glp_A 145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMA-----------------------ALCPHKFPAIQN 201 (310)
T ss_dssp SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHT-----------------------TSCTTSSCCCCS
T ss_pred cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhH-----------------------HHhhhcCCCCCE
Confidence 6677777777776666556666666666666666665421 110 111234455555
Q ss_pred EEccCCcccccCCc----cccCCCCCCEEECCCCcccccCChhccCC---CCCCEEECCCCcCccccchhcccCcCCeee
Q 037951 495 FDVSNNDLSGEIPS----ELGLCSSLEEIYLAENFFNGFIPSFFRTS---RGIRKVDLSRNNFFGQIPIFLEALSLEYLN 567 (627)
Q Consensus 495 L~Ls~n~l~~~~~~----~l~~l~~L~~L~L~~n~i~~~~~~~l~~l---~~L~~L~ls~n~l~~~~p~~~~~~~L~~L~ 567 (627)
|++++|+++ .++. .++.+++|++|++++|.+++..|..+..+ ++|++|++++|.+. .+|..+. ..|++|+
T Consensus 202 L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~-~~L~~L~ 278 (310)
T 4glp_A 202 LALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP-AKLRVLD 278 (310)
T ss_dssp CBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC-SCCSCEE
T ss_pred EECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc-CCCCEEE
Confidence 555555554 2221 13444555555555555555544444443 35555555555555 3443332 2255555
Q ss_pred CcCCcccccCCCCCccCCCCccccccCC
Q 037951 568 LSFNDFEGRLPTRGIFANASAISVGGCN 595 (627)
Q Consensus 568 ls~n~l~~~~p~~~~~~~l~~l~~~~n~ 595 (627)
+++|++++. |....+++|+.+++.+|+
T Consensus 279 Ls~N~l~~~-~~~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 279 LSSNRLNRA-PQPDELPEVDNLTLDGNP 305 (310)
T ss_dssp CCSCCCCSC-CCTTSCCCCSCEECSSTT
T ss_pred CCCCcCCCC-chhhhCCCccEEECcCCC
Confidence 555555532 222334555555555554
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=99.86 E-value=1.9e-22 Score=202.49 Aligned_cols=254 Identities=14% Similarity=0.161 Sum_probs=128.9
Q ss_pred CcEeecccccccccCccCcCCC--CCcCEEeccCccCCCCCCCCccccccCCCCCcccEEEccCcccccccchhHHhccc
Q 037951 268 LEYVEIASNSFFGKLSVNFGGM--KNLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLSS 345 (627)
Q Consensus 268 L~~L~l~~~~~~~~~~~~l~~l--~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~ 345 (627)
++.++++++.+. +..+..+ ++++.+++++|.+.+... .+..+++|++|++++|.+++.
T Consensus 49 ~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~-------~~~~~~~L~~L~L~~~~l~~~---------- 108 (336)
T 2ast_B 49 WQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLA-------EHFSPFRVQHMDLSNSVIEVS---------- 108 (336)
T ss_dssp SSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCC-------SCCCCBCCCEEECTTCEECHH----------
T ss_pred heeeccccccCC---HHHHHhhhhccceEEEcCCccccccch-------hhccCCCCCEEEccCCCcCHH----------
Confidence 556666665543 2223333 556666666655544221 123445555555555555433
Q ss_pred cccEEEeecccccccCcccccCCCCCCEEeCCCCccccccchhhcCCCCCcEeeccCC-ccccc-CChhhhCCCCCCEEE
Q 037951 346 QLQILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGN-HFSGE-IPSTLGNLSSLYEIF 423 (627)
Q Consensus 346 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n-~~~~~-~~~~~~~~~~L~~L~ 423 (627)
.++..+..+++|++|++++|.+++..+..+..+++|+.|++++| .+++. ++..+..+++|++|+
T Consensus 109 --------------~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~ 174 (336)
T 2ast_B 109 --------------TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELN 174 (336)
T ss_dssp --------------HHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEE
T ss_pred --------------HHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEc
Confidence 03333444445555555555544444444455555555555555 33321 333344455555555
Q ss_pred ccCC-ccccc-cChhhcCCC-CCCEEECcCC--cCc-ccCCccccccccCccEEEccCCc-cccCCCccccCCCCCCEEE
Q 037951 424 LGDN-NLSGV-IPSSLGNLE-RLAILEMFAN--ELS-GTIPGDIFNISSLSVSLDLAENH-FVGSIPPRIGNLKALRCFD 496 (627)
Q Consensus 424 l~~n-~~~~~-~~~~l~~l~-~L~~L~l~~n--~l~-~~~~~~~~~~~~ll~~L~l~~n~-l~~~~~~~l~~l~~L~~L~ 496 (627)
+++| .+++. ++..+..++ +|++|++++| .+. +.++..+..++++ ++|++++|. +.+..+..+.++++|++|+
T Consensus 175 l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L-~~L~l~~~~~l~~~~~~~l~~l~~L~~L~ 253 (336)
T 2ast_B 175 LSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNL-VHLDLSDSVMLKNDCFQEFFQLNYLQHLS 253 (336)
T ss_dssp CCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTC-SEEECTTCTTCCGGGGGGGGGCTTCCEEE
T ss_pred CCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCC-CEEeCCCCCcCCHHHHHHHhCCCCCCEee
Confidence 5555 44432 233444555 5555555555 222 2333344445555 556666655 4444445566667777777
Q ss_pred ccCCc-ccccCCccccCCCCCCEEECCCCcccccCChhccCCCCCCEEECCCCcCccccchhcc
Q 037951 497 VSNND-LSGEIPSELGLCSSLEEIYLAENFFNGFIPSFFRTSRGIRKVDLSRNNFFGQIPIFLE 559 (627)
Q Consensus 497 Ls~n~-l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~ 559 (627)
+++|. +.......+..+++|++|++++| ++......+. ..++.|++++|.+++..|..+.
T Consensus 254 l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~~~~~l~--~~l~~L~l~~n~l~~~~~~~~~ 314 (336)
T 2ast_B 254 LSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLK--EALPHLQINCSHFTTIARPTIG 314 (336)
T ss_dssp CTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHH--HHSTTSEESCCCSCCTTCSSCS
T ss_pred CCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHHHHHHHH--hhCcceEEecccCccccCCccc
Confidence 77773 33222234666777777777777 4332222221 2255555777777776665544
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
Probab=99.85 E-value=2.2e-20 Score=184.31 Aligned_cols=190 Identities=23% Similarity=0.359 Sum_probs=121.5
Q ss_pred cccEEEeecccccccCcccccCCCCCCEEeCCCCccccccchhhcCCCCCcEeeccCCcccccCChhhhCCCCCCEEEcc
Q 037951 346 QLQILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLG 425 (627)
Q Consensus 346 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~ 425 (627)
+|++|++++|.+.. ++ .+..+++|+.|++++|.+++..+ +..+++|+.|++++|.+.+. ..+..+++|++|+++
T Consensus 42 ~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~l~ 115 (308)
T 1h6u_A 42 GITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDLT 115 (308)
T ss_dssp TCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEEECT
T ss_pred CcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCCEEECC
Confidence 56666666666653 33 35666677777777776664332 66677777777777776632 246667777777777
Q ss_pred CCccccccChhhcCCCCCCEEECcCCcCcccCCccccccccCccEEEccCCccccCCCccccCCCCCCEEEccCCccccc
Q 037951 426 DNNLSGVIPSSLGNLERLAILEMFANELSGTIPGDIFNISSLSVSLDLAENHFVGSIPPRIGNLKALRCFDVSNNDLSGE 505 (627)
Q Consensus 426 ~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~ll~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ 505 (627)
+|.+++. + .+..+++|+.|++++|.+.+ ++. +..++.+ ++|++++|.+.+..+ +..+++|++|++++|.+++
T Consensus 116 ~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L-~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~- 187 (308)
T 1h6u_A 116 STQITDV-T-PLAGLSNLQVLYLDLNQITN-ISP-LAGLTNL-QYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISD- 187 (308)
T ss_dssp TSCCCCC-G-GGTTCTTCCEEECCSSCCCC-CGG-GGGCTTC-CEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-
T ss_pred CCCCCCc-h-hhcCCCCCCEEECCCCccCc-Ccc-ccCCCCc-cEEEccCCcCCCChh--hcCCCCCCEEECCCCccCc-
Confidence 7776643 2 26667777777777776653 222 5556666 667777776664322 6677777777777777763
Q ss_pred CCccccCCCCCCEEECCCCcccccCChhccCCCCCCEEECCCCcCcc
Q 037951 506 IPSELGLCSSLEEIYLAENFFNGFIPSFFRTSRGIRKVDLSRNNFFG 552 (627)
Q Consensus 506 ~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~ls~n~l~~ 552 (627)
++. +..+++|++|++++|.+++..+ +..+++|+.|++++|++.+
T Consensus 188 ~~~-l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 188 ISP-LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CGG-GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred Chh-hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeec
Confidence 332 6677777777777777775542 6677777777777777753
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
Probab=99.84 E-value=2.2e-20 Score=184.23 Aligned_cols=206 Identities=22% Similarity=0.329 Sum_probs=172.0
Q ss_pred EeecccccccCcccccCCCCCCEEeCCCCccccccchhhcCCCCCcEeeccCCcccccCChhhhCCCCCCEEEccCCccc
Q 037951 351 VLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLGDNNLS 430 (627)
Q Consensus 351 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~ 430 (627)
.+..+.+.+.+ ....+++|+.|++++|.++. ++ .+..+++|+.|++++|.+.+.. . +..+++|++|++++|.++
T Consensus 25 ~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~-~-~~~l~~L~~L~L~~n~l~ 98 (308)
T 1h6u_A 25 AAGKSNVTDTV--TQADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLA-P-LKNLTKITELELSGNPLK 98 (308)
T ss_dssp HTTCSSTTSEE--CHHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCG-G-GTTCCSCCEEECCSCCCS
T ss_pred HhCCCCcCcee--cHHHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCCh-h-HccCCCCCEEEccCCcCC
Confidence 34445444322 24567899999999999984 44 5888999999999999998544 3 889999999999999998
Q ss_pred cccChhhcCCCCCCEEECcCCcCcccCCccccccccCccEEEccCCccccCCCccccCCCCCCEEEccCCcccccCCccc
Q 037951 431 GVIPSSLGNLERLAILEMFANELSGTIPGDIFNISSLSVSLDLAENHFVGSIPPRIGNLKALRCFDVSNNDLSGEIPSEL 510 (627)
Q Consensus 431 ~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~ll~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l 510 (627)
+. ..+..+++|+.|++++|.+.+ ++ .+..++.+ ++|++++|.+.+..+ +..+++|++|++++|.+++ ++. +
T Consensus 99 ~~--~~~~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L-~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~~-l 169 (308)
T 1h6u_A 99 NV--SAIAGLQSIKTLDLTSTQITD-VT-PLAGLSNL-QVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSD-LTP-L 169 (308)
T ss_dssp CC--GGGTTCTTCCEEECTTSCCCC-CG-GGTTCTTC-CEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-CGG-G
T ss_pred Cc--hhhcCCCCCCEEECCCCCCCC-ch-hhcCCCCC-CEEECCCCccCcCcc--ccCCCCccEEEccCCcCCC-Chh-h
Confidence 54 368899999999999999984 44 37888888 999999999986543 8899999999999999984 444 8
Q ss_pred cCCCCCCEEECCCCcccccCChhccCCCCCCEEECCCCcCccccchhcccCc-CCeeeCcCCcccc
Q 037951 511 GLCSSLEEIYLAENFFNGFIPSFFRTSRGIRKVDLSRNNFFGQIPIFLEALS-LEYLNLSFNDFEG 575 (627)
Q Consensus 511 ~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~~~-L~~L~ls~n~l~~ 575 (627)
..+++|+.|++++|.+++..+ +..+++|+.|++++|.+.+..| +..++ |+.|++++|++++
T Consensus 170 ~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 170 ANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp TTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred cCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeec
Confidence 999999999999999987644 8899999999999999996554 56666 9999999999975
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.83 E-value=7.4e-20 Score=169.74 Aligned_cols=181 Identities=23% Similarity=0.208 Sum_probs=134.1
Q ss_pred CCCcccceeecCCCCcceecccccCCCCCCCEEECCCCCCcccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCE
Q 037951 46 FCEWEGITCDLRSKALSGLLSPQIGNLSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLTV 125 (627)
Q Consensus 46 ~c~~~~~~c~l~~~~l~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~ 125 (627)
.|.|.++.| .+++++.. |..+ .++|++|++++|.+++..+..|.++++|++|++++|++++..+..|.++++|++
T Consensus 6 ~C~~~~v~c--~~~~l~~~-p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 80 (208)
T 2o6s_A 6 SCSGTTVEC--YSQGRTSV-PTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTY 80 (208)
T ss_dssp EEETTEEEC--CSSCCSSC-CSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred EECCCEEEe--cCCCccCC-CCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCE
Confidence 478988876 34444432 2222 458899999999888666667888899999999999888666666788888888
Q ss_pred EEccCccccccCCccccCCCCCCeeeCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCccCCCCCccEEEeeCccc
Q 037951 126 LVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTGGIPPFLGNLTSLEVVSLAGNPFGGNIPDSLGQLKELKTLGIGGNNL 205 (627)
Q Consensus 126 L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~ 205 (627)
|++++|++++..+..+..+++|++|++++|.+++..+..+.++++|++|++++|.+++..+..+..+++|++|++++|.+
T Consensus 81 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 160 (208)
T 2o6s_A 81 LNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW 160 (208)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCB
T ss_pred EECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCe
Confidence 88888888866666678888888888888888866666678888888888888888866666677788888888888765
Q ss_pred cccCCccccCCCCCcEEEeecccCccCCChhhh
Q 037951 206 SGSIPPSIYNLSFLVIFSVSENQMHGSLPPSLG 238 (627)
Q Consensus 206 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~ 238 (627)
.+ .++.|+.|++..|.++|.+|..++
T Consensus 161 ~~-------~~~~l~~L~~~~n~~~g~ip~~~~ 186 (208)
T 2o6s_A 161 DC-------TCPGIRYLSEWINKHSGVVRNSAG 186 (208)
T ss_dssp CC-------CTTTTHHHHHHHHHCTTTBBCTTS
T ss_pred ec-------CCCCHHHHHHHHHhCCceeeccCc
Confidence 42 344566666666666666665443
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.5e-19 Score=167.74 Aligned_cols=181 Identities=22% Similarity=0.196 Sum_probs=150.9
Q ss_pred CEEECCCCCCcccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEEccCccccccCCccccCCCCCCeeeCCCC
Q 037951 76 REINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPMN 155 (627)
Q Consensus 76 ~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n 155 (627)
+.++.+++.++ .+|..+ .++|++|++++|++++..+..|.++++|++|++++|++++..+..|..+++|++|++++|
T Consensus 10 ~~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 10 TTVECYSQGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence 56888888887 556544 469999999999999777777899999999999999999777777899999999999999
Q ss_pred CCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCccCCCCCccEEEeeCccccccCCccccCCCCCcEEEeecccCccCCCh
Q 037951 156 NLTGGIPPFLGNLTSLEVVSLAGNPFGGNIPDSLGQLKELKTLGIGGNNLSGSIPPSIYNLSFLVIFSVSENQMHGSLPP 235 (627)
Q Consensus 156 ~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~ 235 (627)
.+++..+..+.++++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.+.
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~--- 163 (208)
T 2o6s_A 87 QLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT--- 163 (208)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCC---
T ss_pred cCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecC---
Confidence 99977777789999999999999999977777789999999999999999966666688899999999999877643
Q ss_pred hhhhcCCCCceeccCCccccccCCccccCCCC
Q 037951 236 SLGLYFPNLKLFQTNENFFSGSIPISLSNASK 267 (627)
Q Consensus 236 ~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~ 267 (627)
+++++.|++..|.++|.+|..++.++.
T Consensus 164 -----~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 164 -----CPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp -----TTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred -----CCCHHHHHHHHHhCCceeeccCccccC
Confidence 556777777777777777766655543
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
Probab=99.82 E-value=7.9e-20 Score=184.00 Aligned_cols=238 Identities=16% Similarity=0.162 Sum_probs=165.0
Q ss_pred cEEEccCcccccccchhHHhccccccEEEeecccccccCcccccCCCCCCEEeCCCCccccccc-hhhcCCCCCcE-eec
Q 037951 323 QVLSLGGNQFRGALPHSIANLSSQLQILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSIP-KEMGKLLNLQG-LDF 400 (627)
Q Consensus 323 ~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~-L~L 400 (627)
++++.++++++ .+|..+ +.++++|++++|+++...+.+|.++++|++|++++|++.+.++ .+|.++++++. +.+
T Consensus 12 ~~v~C~~~~Lt-~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp TEEEEESTTCC-SCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred CEEEecCCCCC-ccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 56777888777 566544 3478889999888886656678888888888888888765554 45777877765 556
Q ss_pred cCCcccccCChhhhCCCCCCEEEccCCccccccChhhcCCCCCCEEECcCC-cCcccCC-ccccccccCccEEEccCCcc
Q 037951 401 GGNHFSGEIPSTLGNLSSLYEIFLGDNNLSGVIPSSLGNLERLAILEMFAN-ELSGTIP-GDIFNISSLSVSLDLAENHF 478 (627)
Q Consensus 401 ~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n-~l~~~~~-~~~~~~~~ll~~L~l~~n~l 478 (627)
++|++....+..|..+++|++|++++|++....+..+....++..+++.++ .+. .++ ..+..+...++.|++++|++
T Consensus 88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~-~l~~~~f~~~~~~l~~L~L~~N~i 166 (350)
T 4ay9_X 88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIH-TIERNSFVGLSFESVILWLNKNGI 166 (350)
T ss_dssp EETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCC-EECTTSSTTSBSSCEEEECCSSCC
T ss_pred cCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccc-cccccchhhcchhhhhhccccccc
Confidence 678888777778888888888888888888666656666667778887654 444 444 33444444347788888888
Q ss_pred ccCCCccccCCCCCCEEEccC-CcccccCC-ccccCCCCCCEEECCCCcccccCChhccCCCCCCEEECCCCcCccccch
Q 037951 479 VGSIPPRIGNLKALRCFDVSN-NDLSGEIP-SELGLCSSLEEIYLAENFFNGFIPSFFRTSRGIRKVDLSRNNFFGQIPI 556 (627)
Q Consensus 479 ~~~~~~~l~~l~~L~~L~Ls~-n~l~~~~~-~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~ 556 (627)
....+. .....+|++|++++ |.++ .+| ..|+.+++|++|++++|+++...+.. +.+|+.|.+.++.-...+|.
T Consensus 167 ~~i~~~-~f~~~~L~~l~l~~~n~l~-~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~---~~~L~~L~~l~~~~l~~lP~ 241 (350)
T 4ay9_X 167 QEIHNS-AFNGTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIHSLPSYG---LENLKKLRARSTYNLKKLPT 241 (350)
T ss_dssp CEECTT-SSTTEEEEEEECTTCTTCC-CCCTTTTTTEECCSEEECTTSCCCCCCSSS---CTTCCEEECTTCTTCCCCCC
T ss_pred cCCChh-hccccchhHHhhccCCccc-CCCHHHhccCcccchhhcCCCCcCccChhh---hccchHhhhccCCCcCcCCC
Confidence 744333 33456788888875 4555 554 45788888888888888887554433 45566777766666666774
Q ss_pred hcccCc-CCeeeCcCC
Q 037951 557 FLEALS-LEYLNLSFN 571 (627)
Q Consensus 557 ~~~~~~-L~~L~ls~n 571 (627)
+..+. |+.++++++
T Consensus 242 -l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 242 -LEKLVALMEASLTYP 256 (350)
T ss_dssp -TTTCCSCCEEECSCH
T ss_pred -chhCcChhhCcCCCC
Confidence 44455 888887654
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.81 E-value=3.5e-19 Score=167.50 Aligned_cols=166 Identities=27% Similarity=0.263 Sum_probs=124.8
Q ss_pred CCCCCCCCCCCCCcccceeecCCCCcceecccccCCCCCCCEEECCCCCCcccCCcccCCCCCCCEEeCCCCcCcccCCc
Q 037951 36 ILNSWNDSRHFCEWEGITCDLRSKALSGLLSPQIGNLSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPA 115 (627)
Q Consensus 36 ~~~~w~~~~~~c~~~~~~c~l~~~~l~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~ 115 (627)
....|......|+|.++.| +++.++.+ |..+. ++|++|++++|.+++..|..|..+++|++|+|++|++....+.
T Consensus 8 ~~~~~~~~~~~Cs~~~v~c--~~~~l~~i-p~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~ 82 (229)
T 3e6j_A 8 HHSAACPSQCSCSGTTVDC--RSKRHASV-PAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVG 82 (229)
T ss_dssp ---CCCCTTCEEETTEEEC--TTSCCSSC-CSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred hhhccCCCCCEEeCCEeEc--cCCCcCcc-CCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChh
Confidence 4456666777899999876 55555533 33332 7888888888888877788888888888888888888765556
Q ss_pred cccCCCCCCEEEccCccccccCCccccCCCCCCeeeCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCccCCCCCc
Q 037951 116 NLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTGGIPPFLGNLTSLEVVSLAGNPFGGNIPDSLGQLKEL 195 (627)
Q Consensus 116 ~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L 195 (627)
.|.++++|++|++++|+++...+..|..+++|++|++++|.++ .+|..+.++++|++|++++|.+.+..+..+..+++|
T Consensus 83 ~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 161 (229)
T 3e6j_A 83 VFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSL 161 (229)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTC
T ss_pred hcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCC
Confidence 6788888888888888888666666778888888888888887 567777778888888888888876655667777777
Q ss_pred cEEEeeCccccc
Q 037951 196 KTLGIGGNNLSG 207 (627)
Q Consensus 196 ~~L~l~~n~~~~ 207 (627)
+.|++++|.+.+
T Consensus 162 ~~L~l~~N~~~c 173 (229)
T 3e6j_A 162 THAYLFGNPWDC 173 (229)
T ss_dssp CEEECTTSCBCT
T ss_pred CEEEeeCCCccC
Confidence 777777777654
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
Probab=99.80 E-value=4.9e-19 Score=178.19 Aligned_cols=203 Identities=15% Similarity=0.125 Sum_probs=136.0
Q ss_pred CCcccceeecCCCCcceecccccCCCCCCCEEECCCCCCcccCCcccCCCCCCCEEeCCCCcCcccCC-ccccCCCCCCE
Q 037951 47 CEWEGITCDLRSKALSGLLSPQIGNLSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIP-ANLSYCSRLTV 125 (627)
Q Consensus 47 c~~~~~~c~l~~~~l~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~-~~~~~l~~L~~ 125 (627)
|+|..|.| ++++++. +|..+ .+++++|+|++|+++...+++|.++++|++|+|++|++.+.+| ..|.+++++++
T Consensus 9 C~~~~v~C--~~~~Lt~-iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~ 83 (350)
T 4ay9_X 9 CSNRVFLC--QESKVTE-IPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHE 83 (350)
T ss_dssp EETTEEEE--ESTTCCS-CCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCE
T ss_pred eeCCEEEe--cCCCCCc-cCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhh
Confidence 66666655 4566664 35444 3578999999999986556678999999999999998865444 46788888775
Q ss_pred -EEccCccccccCCccccCCCCCCeeeCCCCCCCCCCCCCCCCCCCCCEEECCC-CCCCCCCCCccCCCC-CccEEEeeC
Q 037951 126 -LVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTGGIPPFLGNLTSLEVVSLAG-NPFGGNIPDSLGQLK-ELKTLGIGG 202 (627)
Q Consensus 126 -L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~-n~~~~~~~~~l~~l~-~L~~L~l~~ 202 (627)
+.+++|+++...+..|..+++|++|++++|.+....+..+....++..+++.+ +.+....+..|..+. .++.|++++
T Consensus 84 ~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~ 163 (350)
T 4ay9_X 84 IRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNK 163 (350)
T ss_dssp EEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCS
T ss_pred hhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccc
Confidence 55667888877788888888888888888888866666666677777888755 456655455566553 577788888
Q ss_pred ccccccCCccccCCCCCcEEEeecccCccCCChhhhhcCCCCceeccCCcccc
Q 037951 203 NNLSGSIPPSIYNLSFLVIFSVSENQMHGSLPPSLGLYFPNLKLFQTNENFFS 255 (627)
Q Consensus 203 n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~~~~~ 255 (627)
|.++ .++.......+|+.+++.+++..+.+|...+..+++|++|++++|.++
T Consensus 164 N~i~-~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~ 215 (350)
T 4ay9_X 164 NGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH 215 (350)
T ss_dssp SCCC-EECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC
T ss_pred cccc-CCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC
Confidence 8877 344444455567777766543333454443332334444444444333
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.78 E-value=2e-18 Score=182.64 Aligned_cols=187 Identities=24% Similarity=0.282 Sum_probs=120.5
Q ss_pred cccEEEeecccccccCcccccCCCCCCEEeCCCCccccccchhhcCCCCCcEeeccCCcccccCChhhhCCCCCCEEEcc
Q 037951 346 QLQILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLG 425 (627)
Q Consensus 346 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~ 425 (627)
+++.|++++|.+++ +|..+ .++|+.|++++|.++ .+| ..+++|+.|++++|.+++ +|. +.. +|++|+++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence 56666666666654 44433 256667777766666 444 345667777777777664 444 433 67777777
Q ss_pred CCccccccChhhcCCCCCCEEECcCCcCcccCCccccccccCccEEEccCCccccCCCccccCCCCCCEEEccCCccccc
Q 037951 426 DNNLSGVIPSSLGNLERLAILEMFANELSGTIPGDIFNISSLSVSLDLAENHFVGSIPPRIGNLKALRCFDVSNNDLSGE 505 (627)
Q Consensus 426 ~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~ll~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ 505 (627)
+|.+++ +|. .+++|+.|++++|.+.+ +|. .++++ ++|++++|.+.+ +|. +. ++|++|++++|.++ .
T Consensus 129 ~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L-~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~ 194 (571)
T 3cvr_A 129 NNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSL-EVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-S 194 (571)
T ss_dssp SSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTC-CEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-S
T ss_pred CCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCc-CEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-c
Confidence 777764 444 46677777777777763 554 34455 677777777765 454 44 77788888888777 6
Q ss_pred CCccccCCCCC-------CEEECCCCcccccCChhccCCCCCCEEECCCCcCccccchhcccC
Q 037951 506 IPSELGLCSSL-------EEIYLAENFFNGFIPSFFRTSRGIRKVDLSRNNFFGQIPIFLEAL 561 (627)
Q Consensus 506 ~~~~l~~l~~L-------~~L~L~~n~i~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~~ 561 (627)
+|. +.. +| +.|++++|.|+. +|..+..+++|+.|++++|++++.+|..+..+
T Consensus 195 lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 195 LPA-VPV--RNHHSEETEIFFRCRENRITH-IPENILSLDPTCTIILEDNPLSSRIRESLSQQ 253 (571)
T ss_dssp CCC-CC----------CCEEEECCSSCCCC-CCGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred hhh-HHH--hhhcccccceEEecCCCccee-cCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence 665 443 66 888888888874 56666668888888888888877777665543
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
Probab=99.77 E-value=7.4e-18 Score=157.25 Aligned_cols=155 Identities=25% Similarity=0.317 Sum_probs=108.5
Q ss_pred CCcccceeecCCCCcceecccccCCCCCCCEEECCCCCCcccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEE
Q 037951 47 CEWEGITCDLRSKALSGLLSPQIGNLSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLTVL 126 (627)
Q Consensus 47 c~~~~~~c~l~~~~l~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L 126 (627)
|.|..+ ++++++++.+ |..+. +++++|++++|.+++..+..|..+++|++|+|++|++++..|..|.++++|++|
T Consensus 11 C~~~~v--~c~~~~l~~i-P~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L 85 (220)
T 2v9t_B 11 CSNNIV--DCRGKGLTEI-PTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSL 85 (220)
T ss_dssp EETTEE--ECTTSCCSSC-CSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEE
T ss_pred ECCCEE--EcCCCCcCcC-CCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEE
Confidence 555544 4455665543 33333 577788888887776666677777788888888887777667777777777777
Q ss_pred EccCccccccCCccccCCCCCCeeeCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCccCCCCCccEEEeeCcccc
Q 037951 127 VLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTGGIPPFLGNLTSLEVVSLAGNPFGGNIPDSLGQLKELKTLGIGGNNLS 206 (627)
Q Consensus 127 ~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~ 206 (627)
++++|+++...+..|..+++|++|++++|.+++..+..|.++++|++|++++|.+++..+..+..+++|++|++++|.+.
T Consensus 86 ~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 86 VLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred ECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 77777777555555677777777777777777666677777777777777777777665566666777777777776654
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.9e-18 Score=182.76 Aligned_cols=186 Identities=22% Similarity=0.337 Sum_probs=125.8
Q ss_pred CCCEEECCCCCCcccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEEccCccccccCCccccCCCCCCeeeCC
Q 037951 74 FLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALP 153 (627)
Q Consensus 74 ~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~ 153 (627)
++++|++++|.+++ +|..+ +++|++|+|++|.++ .+| ..+++|++|++++|++++ +|. +.. +|++|+++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence 57777777777764 55544 267777777777777 555 446777777777777774 555 444 77777777
Q ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCccCCCCCccEEEeeCccccccCCccccCCCCCcEEEeecccCccCC
Q 037951 154 MNNLTGGIPPFLGNLTSLEVVSLAGNPFGGNIPDSLGQLKELKTLGIGGNNLSGSIPPSIYNLSFLVIFSVSENQMHGSL 233 (627)
Q Consensus 154 ~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 233 (627)
+|.+++ +|. .+++|++|++++|.+++ +|. .+++|++|++++|.+++ +|. +. ++|+.|++++|.++ .+
T Consensus 129 ~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~l 195 (571)
T 3cvr_A 129 NNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SL 195 (571)
T ss_dssp SSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SC
T ss_pred CCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-ch
Confidence 777775 444 56777777777777774 444 45677777777777774 555 54 77777777777776 55
Q ss_pred ChhhhhcCCCC-------ceeccCCccccccCCccccCCCCCcEeecccccccccCccCcCC
Q 037951 234 PPSLGLYFPNL-------KLFQTNENFFSGSIPISLSNASKLEYVEIASNSFFGKLSVNFGG 288 (627)
Q Consensus 234 ~~~~~~~~~~L-------~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~ 288 (627)
|. +. .+| +.|++++|.++ .+|..+..+++|+.|++++|.+.+..|..+..
T Consensus 196 p~-~~---~~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~ 252 (571)
T 3cvr_A 196 PA-VP---VRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQ 252 (571)
T ss_dssp CC-CC-----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHH
T ss_pred hh-HH---HhhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHH
Confidence 55 32 255 77788877777 46666667788888888888877766655443
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
Probab=99.77 E-value=6.9e-18 Score=157.45 Aligned_cols=153 Identities=21% Similarity=0.252 Sum_probs=139.4
Q ss_pred CEEECCCCCCcccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEEccCccccccCCccccCCCCCCeeeCCCC
Q 037951 76 REINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPMN 155 (627)
Q Consensus 76 ~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n 155 (627)
+.+++++++++ .+|..+. ++|+.|++++|.+++..+..|..+++|++|++++|++++..|..|.++++|++|++++|
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 57999999997 6676665 79999999999999877788999999999999999999888999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCccCCCCCccEEEeeCccccccCCccccCCCCCcEEEeecccCcc
Q 037951 156 NLTGGIPPFLGNLTSLEVVSLAGNPFGGNIPDSLGQLKELKTLGIGGNNLSGSIPPSIYNLSFLVIFSVSENQMHG 231 (627)
Q Consensus 156 ~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~ 231 (627)
.++...+..|.++++|++|++++|.+.+..+..|..+++|++|++++|.+++..+..+..+++|+.+++++|.+..
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 9997666778999999999999999998888999999999999999999997777789999999999999998864
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.77 E-value=7.8e-18 Score=157.08 Aligned_cols=156 Identities=24% Similarity=0.270 Sum_probs=104.5
Q ss_pred CCcccceeecCCCCcceecccccCCCCCCCEEECCCCCCcccCC-cccCCCCCCCEEeCCCCcCcccCCccccCCCCCCE
Q 037951 47 CEWEGITCDLRSKALSGLLSPQIGNLSFLREINLMNNTIQGEIP-LEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLTV 125 (627)
Q Consensus 47 c~~~~~~c~l~~~~l~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~-~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~ 125 (627)
|.|..+ +++++.++. +|..+. ..+++|++++|.+++..+ ..|..+++|++|++++|.+++..+..|.++++|++
T Consensus 11 C~~~~l--~~s~n~l~~-iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~ 85 (220)
T 2v70_A 11 CEGTTV--DCSNQKLNK-IPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNE 85 (220)
T ss_dssp EETTEE--ECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred ECCCEe--EeCCCCccc-CccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCE
Confidence 555533 556666654 344332 345777777777775533 34677777777777777777666666777777777
Q ss_pred EEccCccccccCCccccCCCCCCeeeCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCccCCCCCccEEEeeCccc
Q 037951 126 LVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTGGIPPFLGNLTSLEVVSLAGNPFGGNIPDSLGQLKELKTLGIGGNNL 205 (627)
Q Consensus 126 L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~ 205 (627)
|++++|++++..+..|..+++|++|++++|.+++..|..+.++++|++|++++|.+++..|..|..+++|++|++++|.+
T Consensus 86 L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 165 (220)
T 2v70_A 86 ILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPF 165 (220)
T ss_dssp EECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCE
T ss_pred EECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCC
Confidence 77777777766666677777777777777777766666677777777777777777766666666666777776666666
Q ss_pred cc
Q 037951 206 SG 207 (627)
Q Consensus 206 ~~ 207 (627)
.+
T Consensus 166 ~c 167 (220)
T 2v70_A 166 NC 167 (220)
T ss_dssp EC
T ss_pred cC
Confidence 53
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=1e-17 Score=156.35 Aligned_cols=156 Identities=18% Similarity=0.189 Sum_probs=140.7
Q ss_pred CEEECCCCCCcccCCcccCCCCCCCEEeCCCCcCcccCC-ccccCCCCCCEEEccCccccccCCccccCCCCCCeeeCCC
Q 037951 76 REINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIP-ANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPM 154 (627)
Q Consensus 76 ~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~-~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~ 154 (627)
++++++++.++ .+|..+. ..+++|++++|.+++..+ ..|.++++|++|++++|++++..+..|.++++|++|++++
T Consensus 14 ~~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 58999999998 5776664 467999999999997655 4589999999999999999988888999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCccCCCCCccEEEeeCccccccCCccccCCCCCcEEEeecccCccCCC
Q 037951 155 NNLTGGIPPFLGNLTSLEVVSLAGNPFGGNIPDSLGQLKELKTLGIGGNNLSGSIPPSIYNLSFLVIFSVSENQMHGSLP 234 (627)
Q Consensus 155 n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~ 234 (627)
|.+++..+..|.++++|++|++++|.+.+..+..|..+++|++|++++|.+++..|..+..+++|+.|++++|.+.+..+
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence 99998888889999999999999999998889999999999999999999998889999999999999999999886554
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.75 E-value=3.4e-17 Score=153.90 Aligned_cols=155 Identities=22% Similarity=0.205 Sum_probs=137.7
Q ss_pred CCEEECCCCCCcccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEEccCccccccCCccccCCCCCCeeeCCC
Q 037951 75 LREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPM 154 (627)
Q Consensus 75 L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~ 154 (627)
-+.++.+++.+. .+|..+. ++|++|+|++|.+++..|..|.++++|++|++++|++....+..|..+++|++|++++
T Consensus 21 ~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence 356889998887 6776554 8999999999999988899999999999999999999866667789999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCccCCCCCccEEEeeCccccccCCccccCCCCCcEEEeecccCccCC
Q 037951 155 NNLTGGIPPFLGNLTSLEVVSLAGNPFGGNIPDSLGQLKELKTLGIGGNNLSGSIPPSIYNLSFLVIFSVSENQMHGSL 233 (627)
Q Consensus 155 n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 233 (627)
|.+++..+..|..+++|++|++++|.+. .+|..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.+..
T Consensus 98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 175 (229)
T 3e6j_A 98 NQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCEC 175 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTB
T ss_pred CcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCc
Confidence 9999777777899999999999999999 67888999999999999999999666677889999999999999887554
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
Probab=99.74 E-value=9.8e-18 Score=163.70 Aligned_cols=167 Identities=21% Similarity=0.344 Sum_probs=79.2
Q ss_pred cccEEEeecccccccCcccccCCCCCCEEeCCCCccccccchhhcCCCCCcEeeccCCcccccCChhhhCCCCCCEEEcc
Q 037951 346 QLQILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLG 425 (627)
Q Consensus 346 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~ 425 (627)
+|+.|++++|.+... + .+..+++|+.|++++|++++..+ +..+++|+.|++++|.+.+ ++ .+..+++|++|+++
T Consensus 47 ~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~ 120 (291)
T 1h6t_A 47 SIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLE 120 (291)
T ss_dssp TCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECT
T ss_pred cccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEECC
Confidence 455555555555422 2 24445555555555555543222 4455555555555555442 11 24445555555555
Q ss_pred CCccccccChhhcCCCCCCEEECcCCcCcccCCccccccccCccEEEccCCccccCCCccccCCCCCCEEEccCCccccc
Q 037951 426 DNNLSGVIPSSLGNLERLAILEMFANELSGTIPGDIFNISSLSVSLDLAENHFVGSIPPRIGNLKALRCFDVSNNDLSGE 505 (627)
Q Consensus 426 ~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~ll~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ 505 (627)
+|.+++. ..+..+++|+.|++++|.+. +. ..+..+++|++|++++|.+++.
T Consensus 121 ~n~i~~~--~~l~~l~~L~~L~l~~n~l~-------------------------~~--~~l~~l~~L~~L~L~~N~l~~~ 171 (291)
T 1h6t_A 121 HNGISDI--NGLVHLPQLESLYLGNNKIT-------------------------DI--TVLSRLTKLDTLSLEDNQISDI 171 (291)
T ss_dssp TSCCCCC--GGGGGCTTCCEEECCSSCCC-------------------------CC--GGGGGCTTCSEEECCSSCCCCC
T ss_pred CCcCCCC--hhhcCCCCCCEEEccCCcCC-------------------------cc--hhhccCCCCCEEEccCCccccc
Confidence 5554432 23444444444444444443 22 2344455555555555555422
Q ss_pred CCccccCCCCCCEEECCCCcccccCChhccCCCCCCEEECCCCcCc
Q 037951 506 IPSELGLCSSLEEIYLAENFFNGFIPSFFRTSRGIRKVDLSRNNFF 551 (627)
Q Consensus 506 ~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~ls~n~l~ 551 (627)
.+ +..+++|+.|++++|.+++. + .+..+++|+.|++++|++.
T Consensus 172 ~~--l~~l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 172 VP--LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECL 213 (291)
T ss_dssp GG--GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEE
T ss_pred hh--hcCCCccCEEECCCCcCCCC-h-hhccCCCCCEEECcCCccc
Confidence 22 45555555555555555432 2 2455555555555555544
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.74 E-value=2.2e-17 Score=166.82 Aligned_cols=176 Identities=18% Similarity=0.137 Sum_probs=113.6
Q ss_pred CEEeCCCCccccccchhhcCCCCCcEeeccCCcccccCChhhh-CCCCCCEEEccCCccccccChhhcCCCCCCEEECcC
Q 037951 372 YSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLG-NLSSLYEIFLGDNNLSGVIPSSLGNLERLAILEMFA 450 (627)
Q Consensus 372 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~ 450 (627)
+.++++++.++ .+|..+. +.++.|+|++|.+++..+..|. .+++|++|++++|.+++..+..|..+++|+.|++++
T Consensus 21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 46777777777 4555443 3577888888888766666666 777888888888887766666777777777777777
Q ss_pred CcCcccCCccccccccCccEEEccCCccccCCCccccCCCCCCEEEccCCcccccCCccc---cCCCCCCEEECCCCccc
Q 037951 451 NELSGTIPGDIFNISSLSVSLDLAENHFVGSIPPRIGNLKALRCFDVSNNDLSGEIPSEL---GLCSSLEEIYLAENFFN 527 (627)
Q Consensus 451 n~l~~~~~~~~~~~~~ll~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l---~~l~~L~~L~L~~n~i~ 527 (627)
|.+.+..+..+..+..+ ++|++++|++.+..+..|..+++|++|+|++|++++..+..+ ..+++|+.|+|++|.++
T Consensus 98 N~l~~~~~~~~~~l~~L-~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~ 176 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQAL-EVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK 176 (361)
T ss_dssp SCCCEECTTTTTTCTTC-CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCC
T ss_pred CcCCcCCHHHhCCCcCC-CEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCC
Confidence 77764444455556666 666666666666556666666666666666666663222223 44666666666666666
Q ss_pred ccCChhccCCCC--CCEEECCCCcCc
Q 037951 528 GFIPSFFRTSRG--IRKVDLSRNNFF 551 (627)
Q Consensus 528 ~~~~~~l~~l~~--L~~L~ls~n~l~ 551 (627)
...+..+..++. ++.|++++|++.
T Consensus 177 ~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 177 KLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred ccCHHHhhhccHhhcceEEecCCCcc
Confidence 555455555554 356666666654
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.2e-17 Score=168.60 Aligned_cols=173 Identities=20% Similarity=0.175 Sum_probs=118.9
Q ss_pred ecCCCCcceecccccCCCCCCCEEECCCCCCcccCCcccC-CCCCCCEEeCCCCcCcccCCccccCCCCCCEEEccCccc
Q 037951 55 DLRSKALSGLLSPQIGNLSFLREINLMNNTIQGEIPLEFG-RLRRLETLLLSDNSLVGKIPANLSYCSRLTVLVLGNNKL 133 (627)
Q Consensus 55 ~l~~~~l~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~-~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ls~n~l 133 (627)
++++++++.. |..+. +.+++|+|++|.+++..+..|. ++++|++|+|++|++++..+..|.++++|++|++++|++
T Consensus 24 ~c~~~~l~~i-P~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l 100 (361)
T 2xot_A 24 SCSKQQLPNV-PQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHL 100 (361)
T ss_dssp ECCSSCCSSC-CSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred EeCCCCcCcc-CccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcC
Confidence 5566666653 43333 4577888888888766666676 788888888888888766667788888888888888888
Q ss_pred cccCCccccCCCCCCeeeCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCcc---CCCCCccEEEeeCccccccCC
Q 037951 134 VGSIPFEFVSLYKLKQLALPMNNLTGGIPPFLGNLTSLEVVSLAGNPFGGNIPDSL---GQLKELKTLGIGGNNLSGSIP 210 (627)
Q Consensus 134 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l---~~l~~L~~L~l~~n~~~~~~~ 210 (627)
+...+..|..+++|++|++++|.+.+..+..|.++++|++|++++|.+++..+..+ ..+++|+.|++++|.++...+
T Consensus 101 ~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~ 180 (361)
T 2xot_A 101 HTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPL 180 (361)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCH
T ss_pred CcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCH
Confidence 76666677778888888888888776667777777888888888887775433334 456777777777777764333
Q ss_pred ccccCCCC--CcEEEeecccCc
Q 037951 211 PSIYNLSF--LVIFSVSENQMH 230 (627)
Q Consensus 211 ~~l~~l~~--L~~L~l~~n~l~ 230 (627)
..+..++. ++.|++++|.+.
T Consensus 181 ~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 181 TDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp HHHHHSCHHHHTTEECCSSCEE
T ss_pred HHhhhccHhhcceEEecCCCcc
Confidence 44555554 355666666554
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
Probab=99.74 E-value=4.9e-17 Score=158.73 Aligned_cols=173 Identities=23% Similarity=0.384 Sum_probs=130.3
Q ss_pred cCCCCCcccEEEccCcccccccchhHHhccccccEEEeecccccccCcccccCCCCCCEEeCCCCccccccchhhcCCCC
Q 037951 315 SLANCSKLQVLSLGGNQFRGALPHSIANLSSQLQILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSIPKEMGKLLN 394 (627)
Q Consensus 315 ~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~ 394 (627)
.+..+++|+.|++++|.+... + .+..+. +|++|++++|++++..+ +..+++|+.|++++|.+++ ++ .+..+++
T Consensus 41 ~~~~l~~L~~L~l~~~~i~~~-~-~~~~l~-~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~ 113 (291)
T 1h6t_A 41 TQNELNSIDQIIANNSDIKSV-Q-GIQYLP-NVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKK 113 (291)
T ss_dssp CHHHHHTCCEEECTTSCCCCC-T-TGGGCT-TCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTT
T ss_pred chhhcCcccEEEccCCCcccC-h-hHhcCC-CCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCCC
Confidence 345678999999999999844 3 356665 89999999999986554 8899999999999999985 33 4889999
Q ss_pred CcEeeccCCcccccCChhhhCCCCCCEEEccCCccccccChhhcCCCCCCEEECcCCcCcccCCccccccccCccEEEcc
Q 037951 395 LQGLDFGGNHFSGEIPSTLGNLSSLYEIFLGDNNLSGVIPSSLGNLERLAILEMFANELSGTIPGDIFNISSLSVSLDLA 474 (627)
Q Consensus 395 L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~ll~~L~l~ 474 (627)
|+.|++++|++.+. ..+..+++|+.|++++|.+++. ..+..+++|+.|++++|.+.+..+ +..++.+ ++|+++
T Consensus 114 L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L-~~L~L~ 186 (291)
T 1h6t_A 114 LKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKL-QNLYLS 186 (291)
T ss_dssp CCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTC-CEEECC
T ss_pred CCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCcc-CEEECC
Confidence 99999999999853 4688899999999999999865 578888999999998888874322 4444444 555555
Q ss_pred CCccccCCCccccCCCCCCEEEccCCccc
Q 037951 475 ENHFVGSIPPRIGNLKALRCFDVSNNDLS 503 (627)
Q Consensus 475 ~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~ 503 (627)
+|.+.+. + .+..+++|+.|++++|+++
T Consensus 187 ~N~i~~l-~-~l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 187 KNHISDL-R-ALAGLKNLDVLELFSQECL 213 (291)
T ss_dssp SSCCCBC-G-GGTTCTTCSEEEEEEEEEE
T ss_pred CCcCCCC-h-hhccCCCCCEEECcCCccc
Confidence 5555432 2 2444555555555555544
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
Probab=99.73 E-value=1.2e-17 Score=178.66 Aligned_cols=169 Identities=22% Similarity=0.391 Sum_probs=73.8
Q ss_pred CCCCCEEeCCCCccccccchhhcCCCCCcEeeccCCcccccCChhhhCCCCCCEEEccCCccccccChhhcCCCCCCEEE
Q 037951 368 LVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLGDNNLSGVIPSSLGNLERLAILE 447 (627)
Q Consensus 368 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~ 447 (627)
+++|+.|++++|.+.. ++ .+..+++|+.|+|++|.+.+..+ +..+++|+.|++++|.+.+ ++ .+..+++|+.|+
T Consensus 42 L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~ 115 (605)
T 1m9s_A 42 LNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSLS 115 (605)
T ss_dssp HTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEEE
T ss_pred CCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEEE
Confidence 3444444444444432 11 23444444444444444442222 3444444444444444442 11 344444444444
Q ss_pred CcCCcCcccCCccccccccCccEEEccCCccccCCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEECCCCccc
Q 037951 448 MFANELSGTIPGDIFNISSLSVSLDLAENHFVGSIPPRIGNLKALRCFDVSNNDLSGEIPSELGLCSSLEEIYLAENFFN 527 (627)
Q Consensus 448 l~~n~l~~~~~~~~~~~~~ll~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~i~ 527 (627)
+++|.+.+ + ..+..++.| +.|++++|.+.+. ..+..+++|++|+|++|.+.+..| +..+++|+.|+|++|.++
T Consensus 116 Ls~N~l~~-l-~~l~~l~~L-~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~ 188 (605)
T 1m9s_A 116 LEHNGISD-I-NGLVHLPQL-ESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS 188 (605)
T ss_dssp CTTSCCCC-C-GGGGGCTTC-SEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred ecCCCCCC-C-ccccCCCcc-CEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCC
Confidence 44444432 1 223344444 4444444444432 234445555555555555543322 445555555555555554
Q ss_pred ccCChhccCCCCCCEEECCCCcCc
Q 037951 528 GFIPSFFRTSRGIRKVDLSRNNFF 551 (627)
Q Consensus 528 ~~~~~~l~~l~~L~~L~ls~n~l~ 551 (627)
+. ..+..+++|+.|++++|++.
T Consensus 189 ~l--~~l~~l~~L~~L~L~~N~l~ 210 (605)
T 1m9s_A 189 DL--RALAGLKNLDVLELFSQECL 210 (605)
T ss_dssp BC--GGGTTCTTCSEEECCSEEEE
T ss_pred CC--hHHccCCCCCEEEccCCcCc
Confidence 32 22444555555555555544
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.4e-17 Score=152.70 Aligned_cols=153 Identities=17% Similarity=0.171 Sum_probs=122.6
Q ss_pred CCCCCCCEEECCCCCCcccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEEccCccccccCCccccCCCCCCe
Q 037951 70 GNLSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQ 149 (627)
Q Consensus 70 ~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~ 149 (627)
..+++|++|++++|.+. .+| .+..+++|++|++++|.++ .+..+..+++|++|++++|++++..+..+..+++|++
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 45678899999999887 556 6888899999999998665 2347888999999999999988777888888999999
Q ss_pred eeCCCCCCCCCCCCCCCCCCCCCEEECCCCC-CCCCCCCccCCCCCccEEEeeCccccccCCccccCCCCCcEEEeeccc
Q 037951 150 LALPMNNLTGGIPPFLGNLTSLEVVSLAGNP-FGGNIPDSLGQLKELKTLGIGGNNLSGSIPPSIYNLSFLVIFSVSENQ 228 (627)
Q Consensus 150 L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~-~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~ 228 (627)
|++++|.+++..+..++++++|++|++++|. +. .++ .+..+++|++|++++|.+++ ++ .+..+++|+.|++++|.
T Consensus 117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC-
T ss_pred EEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcc
Confidence 9999998887677778888999999999987 66 344 67888888888888888874 33 67778888888888887
Q ss_pred Cc
Q 037951 229 MH 230 (627)
Q Consensus 229 l~ 230 (627)
+.
T Consensus 193 i~ 194 (197)
T 4ezg_A 193 IG 194 (197)
T ss_dssp --
T ss_pred cC
Confidence 65
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
Probab=99.71 E-value=5.2e-17 Score=173.82 Aligned_cols=184 Identities=25% Similarity=0.321 Sum_probs=123.7
Q ss_pred cCCCCcceecccccCCCCCCCEEECCCCCCcccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEEccCccccc
Q 037951 56 LRSKALSGLLSPQIGNLSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLTVLVLGNNKLVG 135 (627)
Q Consensus 56 l~~~~l~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~ 135 (627)
+..+.+.+.. .+..+++|+.|++++|.+.. ++ .+..+++|+.|+|++|.+.+..+ +..+++|++|+|++|.+.+
T Consensus 28 l~~~~i~~~~--~~~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~ 101 (605)
T 1m9s_A 28 LKKKSVTDAV--TQNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD 101 (605)
T ss_dssp TTCSCTTSEE--CHHHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC
T ss_pred ccCCCccccc--chhcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC
Confidence 4444444433 24566778888888887763 33 47778888888888888775433 7778888888888887763
Q ss_pred cCCccccCCCCCCeeeCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCccCCCCCccEEEeeCccccccCCccccC
Q 037951 136 SIPFEFVSLYKLKQLALPMNNLTGGIPPFLGNLTSLEVVSLAGNPFGGNIPDSLGQLKELKTLGIGGNNLSGSIPPSIYN 215 (627)
Q Consensus 136 ~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~ 215 (627)
+ ..+..+++|++|++++|.+.+. ..+..+++|+.|+|++|.+.+. ..+..+++|+.|+|++|.+.+..| +..
T Consensus 102 -l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~ 173 (605)
T 1m9s_A 102 -L-SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAG 173 (605)
T ss_dssp -C-TTSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTT
T ss_pred -C-hhhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hcc
Confidence 3 3677777888888888877742 3477777788888888777754 567777777777777777775433 677
Q ss_pred CCCCcEEEeecccCccCCChhhhhcCCCCceeccCCccccc
Q 037951 216 LSFLVIFSVSENQMHGSLPPSLGLYFPNLKLFQTNENFFSG 256 (627)
Q Consensus 216 l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~~~~~~ 256 (627)
+++|+.|++++|.+.+. + .+. .+++|+.|++++|.+.+
T Consensus 174 l~~L~~L~Ls~N~i~~l-~-~l~-~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 174 LTKLQNLYLSKNHISDL-R-ALA-GLKNLDVLELFSQECLN 211 (605)
T ss_dssp CTTCCEEECCSSCCCBC-G-GGT-TCTTCSEEECCSEEEEC
T ss_pred CCCCCEEECcCCCCCCC-h-HHc-cCCCCCEEEccCCcCcC
Confidence 77777777777777642 2 222 25556666666555543
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=99.70 E-value=3.3e-18 Score=187.83 Aligned_cols=235 Identities=18% Similarity=0.170 Sum_probs=123.7
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCCCCCCCCC-CCCCCcccceeecCCCCcceecccccCCCCCCCEEECCCCCCcccCCcc
Q 037951 14 FEEGDLAALQAFKSMISHDPQGILNSWNDS-RHFCEWEGITCDLRSKALSGLLSPQIGNLSFLREINLMNNTIQGEIPLE 92 (627)
Q Consensus 14 ~~~~~~~~l~~~~~~~~~~~~~~~~~w~~~-~~~c~~~~~~c~l~~~~l~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~ 92 (627)
..+.+++++..+..+.....+..-..|... ...+.|.++.+ .-++++.|+|.++.+.. .+..
T Consensus 129 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------s~~~~~~l~L~~n~~~~-~~~~ 191 (727)
T 4b8c_D 129 LVDCTKQALMEMADTLTDSKTAKKQQPTGDSTPSGTATNSAV----------------STPLTPKIELFANGKDE-ANQA 191 (727)
T ss_dssp ---CCCHHHHHHHHHHHHHHTTC---------------------------------------------------------
T ss_pred ccccchhhhhhhhhhcccccCcccCCCcCCCCccccCCCcee----------------cCCccceEEeeCCCCCc-chhh
Confidence 455677888888887765544444556432 23455655433 11346677777777663 3333
Q ss_pred cCCCCCCCEEe-----CCCCcCcccCCccccCCCCCCEEEccCccccccCCccccCCCCCCeeeCCCCCCCCCCCCCCCC
Q 037951 93 FGRLRRLETLL-----LSDNSLVGKIPANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTGGIPPFLGN 167 (627)
Q Consensus 93 ~~~l~~L~~L~-----L~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~ 167 (627)
+.....|+.+. +..|.+. ..+..+..++.|++|+|++|.+. .+|..+..+++|++|+|++|.++ .+|..+++
T Consensus 192 ~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~ 268 (727)
T 4b8c_D 192 LLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKN 268 (727)
T ss_dssp -------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGG
T ss_pred HhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhC
Confidence 32222233222 2233333 45667788888888888888887 66767778888888888888888 67777888
Q ss_pred CCCCCEEECCCCCCCCCCCCccCCCCCccEEEeeCccccccCCccccCCCCCcEEEeecccCccCCChhhhhcCCCCcee
Q 037951 168 LTSLEVVSLAGNPFGGNIPDSLGQLKELKTLGIGGNNLSGSIPPSIYNLSFLVIFSVSENQMHGSLPPSLGLYFPNLKLF 247 (627)
Q Consensus 168 l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L 247 (627)
+++|++|+|++|.++ .+|..+..+++|++|+|++|.+. .+|..++.+++|+.|++++|.+.+.+|..+.........+
T Consensus 269 l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l 346 (727)
T 4b8c_D 269 LSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIF 346 (727)
T ss_dssp GTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHH
T ss_pred CCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHH
Confidence 888888888888888 66888888888888888888887 6787788888888888888888877777665432333346
Q ss_pred ccCCccccccCCccccCCCCCcEeecccc
Q 037951 248 QTNENFFSGSIPISLSNASKLEYVEIASN 276 (627)
Q Consensus 248 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 276 (627)
++++|.+++.+|.. |+.++++.|
T Consensus 347 ~l~~N~l~~~~p~~------l~~l~l~~n 369 (727)
T 4b8c_D 347 YLRDNRPEIPLPHE------RRFIEINTD 369 (727)
T ss_dssp HHHHCCCCCCCCCC---------------
T ss_pred hhccCcccCcCccc------cceeEeecc
Confidence 77888887766653 455556555
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.70 E-value=5.4e-17 Score=148.78 Aligned_cols=110 Identities=15% Similarity=0.227 Sum_probs=47.0
Q ss_pred hcCCCCCCEEECcCCcCcccCCccccccccCccEEEccCCccccCCCccccCCCCCCEEEccCCc-ccccCCccccCCCC
Q 037951 437 LGNLERLAILEMFANELSGTIPGDIFNISSLSVSLDLAENHFVGSIPPRIGNLKALRCFDVSNND-LSGEIPSELGLCSS 515 (627)
Q Consensus 437 l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~ll~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~-l~~~~~~~l~~l~~ 515 (627)
+..+++|++|++++|.+.+..+..+..++.+ ++|++++|.+.+..+..+..+++|++|++++|. ++ .+| .+..+++
T Consensus 84 l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L-~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~ 160 (197)
T 4ezg_A 84 ISGLSNLERLRIMGKDVTSDKIPNLSGLTSL-TLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPE 160 (197)
T ss_dssp GTTCTTCCEEEEECTTCBGGGSCCCTTCTTC-CEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSS
T ss_pred hhcCCCCCEEEeECCccCcccChhhcCCCCC-CEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCC
Confidence 3333444444444433333233333333333 333333333333333344445555555555554 33 333 3455555
Q ss_pred CCEEECCCCcccccCChhccCCCCCCEEECCCCcCc
Q 037951 516 LEEIYLAENFFNGFIPSFFRTSRGIRKVDLSRNNFF 551 (627)
Q Consensus 516 L~~L~L~~n~i~~~~~~~l~~l~~L~~L~ls~n~l~ 551 (627)
|+.|++++|.+++. + .+..+++|+.|++++|++.
T Consensus 161 L~~L~l~~n~i~~~-~-~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 161 LKSLNIQFDGVHDY-R-GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp CCEEECTTBCCCCC-T-TGGGCSSCCEEEECBC---
T ss_pred CCEEECCCCCCcCh-H-HhccCCCCCEEEeeCcccC
Confidence 55555555555432 2 3445555555555555543
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.69 E-value=5.4e-17 Score=155.82 Aligned_cols=167 Identities=22% Similarity=0.288 Sum_probs=86.6
Q ss_pred cccEEEeecccccccCcccccCCCCCCEEeCCCCccccccchhhcCCCCCcEeeccCCcccccCChhhhCCCCCCEEEcc
Q 037951 346 QLQILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLG 425 (627)
Q Consensus 346 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~ 425 (627)
++..++++++.+++.. .+..+++|+.|++++|.++. ++ .+..+++|+.|++++|.+.+..+ +..+++|++|+++
T Consensus 20 ~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~ 93 (263)
T 1xeu_A 20 NAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVN 93 (263)
T ss_dssp HHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECC
T ss_pred HHHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECC
Confidence 3555555555554322 34455556666666655552 23 34555555555555555553222 4555555555555
Q ss_pred CCccccccChhhcCCCCCCEEECcCCcCcccCCccccccccCccEEEccCCccccCCCccccCCCCCCEEEccCCccccc
Q 037951 426 DNNLSGVIPSSLGNLERLAILEMFANELSGTIPGDIFNISSLSVSLDLAENHFVGSIPPRIGNLKALRCFDVSNNDLSGE 505 (627)
Q Consensus 426 ~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~ll~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ 505 (627)
+|++++. +. +.. ++|+ +|++++|++.+. ..+..+++|++|++++|++++
T Consensus 94 ~N~l~~l-~~-~~~-~~L~-------------------------~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~- 142 (263)
T 1xeu_A 94 RNRLKNL-NG-IPS-ACLS-------------------------RLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKS- 142 (263)
T ss_dssp SSCCSCC-TT-CCC-SSCC-------------------------EEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCB-
T ss_pred CCccCCc-Cc-ccc-Cccc-------------------------EEEccCCccCCC--hhhcCcccccEEECCCCcCCC-
Confidence 5555432 21 111 4444 444444444432 235555666666666666652
Q ss_pred CCccccCCCCCCEEECCCCcccccCChhccCCCCCCEEECCCCcCcc
Q 037951 506 IPSELGLCSSLEEIYLAENFFNGFIPSFFRTSRGIRKVDLSRNNFFG 552 (627)
Q Consensus 506 ~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~ls~n~l~~ 552 (627)
++ .+..+++|+.|++++|.+++. ..+..+++|+.|++++|++..
T Consensus 143 ~~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 143 IV-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVN 186 (263)
T ss_dssp CG-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEEC
T ss_pred Ch-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccC
Confidence 22 455566666666666666554 445556666666666666553
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
Probab=99.69 E-value=7e-17 Score=147.17 Aligned_cols=132 Identities=17% Similarity=0.203 Sum_probs=91.7
Q ss_pred CEEEccCCccccccChhhcCCCCCCEEECcCCcCcccCCc-cccccccCccEEEccCCccccCCCccccCCCCCCEEEcc
Q 037951 420 YEIFLGDNNLSGVIPSSLGNLERLAILEMFANELSGTIPG-DIFNISSLSVSLDLAENHFVGSIPPRIGNLKALRCFDVS 498 (627)
Q Consensus 420 ~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~-~~~~~~~ll~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls 498 (627)
+.+++++|.++ .+|..+. .++++|++++|.+.+..+. .+..++.+ ++|++++|++.+..|..|..+++|++|+++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L-~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 86 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHL-VKLELKRNQLTGIEPNAFEGASHIQELQLG 86 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTC-CEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCC-CEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence 67788888776 4555443 3677777777777644443 25666666 777777777776667777777777777777
Q ss_pred CCcccccCCccccCCCCCCEEECCCCcccccCChhccCCCCCCEEECCCCcCccccc
Q 037951 499 NNDLSGEIPSELGLCSSLEEIYLAENFFNGFIPSFFRTSRGIRKVDLSRNNFFGQIP 555 (627)
Q Consensus 499 ~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~ls~n~l~~~~p 555 (627)
+|++++..+..|..+++|++|++++|.+++..|..+..+++|+.|++++|++.+..+
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 777776666667777777777777777777777777777777777777777765444
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.9e-16 Score=152.07 Aligned_cols=162 Identities=23% Similarity=0.289 Sum_probs=123.9
Q ss_pred cCCCCcceecccccCCCCCCCEEECCCCCCcccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEEccCccccc
Q 037951 56 LRSKALSGLLSPQIGNLSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLTVLVLGNNKLVG 135 (627)
Q Consensus 56 l~~~~l~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~ 135 (627)
+..+.+++.. .+..+++|++|++++|.++ .++ .+..+++|++|++++|++++. +. +.++++|++|++++|++++
T Consensus 26 l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~-~~-l~~l~~L~~L~L~~N~l~~ 99 (263)
T 1xeu_A 26 LGKQSVTDLV--SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDL-SP-LKDLTKLEELSVNRNRLKN 99 (263)
T ss_dssp HTCSCTTSEE--CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCSSCCEEECCSSCCSC
T ss_pred hcCCCccccc--chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCC-hh-hccCCCCCEEECCCCccCC
Confidence 4444555433 4667788899999998887 445 688888999999999988854 43 8888899999999998874
Q ss_pred cCCccccCCCCCCeeeCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCccCCCCCccEEEeeCccccccCCccccC
Q 037951 136 SIPFEFVSLYKLKQLALPMNNLTGGIPPFLGNLTSLEVVSLAGNPFGGNIPDSLGQLKELKTLGIGGNNLSGSIPPSIYN 215 (627)
Q Consensus 136 ~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~ 215 (627)
++. +.. ++|++|++++|.+++. ..+.++++|++|++++|++++. + .+..+++|++|++++|.+++. ..+..
T Consensus 100 -l~~-~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~ 170 (263)
T 1xeu_A 100 -LNG-IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTR 170 (263)
T ss_dssp -CTT-CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTT
T ss_pred -cCc-ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhcc
Confidence 333 223 8888999998888853 3588888889999988888854 3 678888888888888888855 66788
Q ss_pred CCCCcEEEeecccCccC
Q 037951 216 LSFLVIFSVSENQMHGS 232 (627)
Q Consensus 216 l~~L~~L~l~~n~l~~~ 232 (627)
+++|+.|++++|.+.+.
T Consensus 171 l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 171 LKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp CCCCCEEEEEEEEEECC
T ss_pred CCCCCEEeCCCCcccCC
Confidence 88888888888887643
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=1.4e-18 Score=184.93 Aligned_cols=202 Identities=16% Similarity=0.182 Sum_probs=100.3
Q ss_pred CCCCCcccEEEccCcccccccchhHHhccccccEEEeecccccccCcccccCCCCCCEEeCCCCccccccchhhcCCCCC
Q 037951 316 LANCSKLQVLSLGGNQFRGALPHSIANLSSQLQILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSIPKEMGKLLNL 395 (627)
Q Consensus 316 l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L 395 (627)
+..++.|+.|++++|+++ .+|..+..+. +|+.|++++|......+..+ ..+...+..|..++.+++|
T Consensus 345 ~~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~-~L~~L~l~~n~~l~~l~~ll-----------~~~~~~~~~~~~l~~l~~L 411 (567)
T 1dce_A 345 SATDEQLFRCELSVEKST-VLQSELESCK-ELQELEPENKWCLLTIILLM-----------RALDPLLYEKETLQYFSTL 411 (567)
T ss_dssp CSTTTTSSSCCCCHHHHH-HHHHHHHHHH-HHHHHCTTCHHHHHHHHHHH-----------HHHCTGGGHHHHHHHHHHH
T ss_pred cccCccceeccCChhhHH-hhHHHHHHHH-HHHHhccccchhhhhHHHHH-----------HhcccccCCHHHHHHHHhc
Confidence 345667777777777776 6677777766 67777775553111111100 1112233455556666666
Q ss_pred cEee-ccCCcccccCChhhhCCCCCCEEEccCCccccccChhhcCCCCCCEEECcCCcCcccCCccccccccCccEEEcc
Q 037951 396 QGLD-FGGNHFSGEIPSTLGNLSSLYEIFLGDNNLSGVIPSSLGNLERLAILEMFANELSGTIPGDIFNISSLSVSLDLA 474 (627)
Q Consensus 396 ~~L~-L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~ll~~L~l~ 474 (627)
+.|+ ++.|.+. .|+.+.+++|.++...+ ..|+.|++++|.+.+ +|. +..+..+ +.|+++
T Consensus 412 ~~L~~l~~n~~~-----------~L~~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~~-lp~-~~~l~~L-~~L~Ls 471 (567)
T 1dce_A 412 KAVDPMRAAYLD-----------DLRSKFLLENSVLKMEY------ADVRVLHLAHKDLTV-LCH-LEQLLLV-THLDLS 471 (567)
T ss_dssp HHHCGGGHHHHH-----------HHHHHHHHHHHHHHHHH------TTCSEEECTTSCCSS-CCC-GGGGTTC-CEEECC
T ss_pred ccCcchhhcccc-----------hhhhhhhhcccccccCc------cCceEEEecCCCCCC-CcC-ccccccC-cEeecC
Confidence 6666 4444332 12222233333332111 124444444444442 333 4444444 455555
Q ss_pred CCccccCCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEECCCCcccccC-ChhccCCCCCCEEECCCCcCccc
Q 037951 475 ENHFVGSIPPRIGNLKALRCFDVSNNDLSGEIPSELGLCSSLEEIYLAENFFNGFI-PSFFRTSRGIRKVDLSRNNFFGQ 553 (627)
Q Consensus 475 ~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~-~~~l~~l~~L~~L~ls~n~l~~~ 553 (627)
+|.+. .+|..+.++++|++|+|++|.+++ +| .++.+++|+.|+|++|.+++.. |..+..+++|+.|++++|++.+.
T Consensus 472 ~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~ 548 (567)
T 1dce_A 472 HNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 548 (567)
T ss_dssp SSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGS
T ss_pred ccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCC
Confidence 55544 444455555555555555555552 44 4555555555555555555544 55555555555555555555543
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.66 E-value=4.7e-17 Score=162.23 Aligned_cols=284 Identities=11% Similarity=0.069 Sum_probs=143.3
Q ss_pred CCCCCEEECCCCCCcccCCcccCC-CCCCCEEeCCCCcCc--ccCCccccCCCCCCEEEccCccccccCCccccC-----
Q 037951 72 LSFLREINLMNNTIQGEIPLEFGR-LRRLETLLLSDNSLV--GKIPANLSYCSRLTVLVLGNNKLVGSIPFEFVS----- 143 (627)
Q Consensus 72 l~~L~~L~Ls~~~~~~~~~~~~~~-l~~L~~L~L~~n~i~--~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~l~~----- 143 (627)
+.+++.|+++++- .......+.. +++|++|||++|++. ...+. .++.++.+.+..+.+ ...+|.+
T Consensus 24 ~~~l~~L~l~g~i-~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~---~~~~~~~~~~~~~~I---~~~aF~~~~~~~ 96 (329)
T 3sb4_A 24 ANSITHLTLTGKL-NAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAG---TYPNGKFYIYMANFV---PAYAFSNVVNGV 96 (329)
T ss_dssp HHHCSEEEEEEEE-CHHHHHHHHHSCTTCCEEEEEEEEECCEEESSS---SSGGGCCEEECTTEE---CTTTTEEEETTE
T ss_pred hCceeEEEEeccc-cHHHHHHHHHhhccCeEEecCcceeEEecCccc---ccccccccccccccc---CHHHhccccccc
Confidence 4567777777541 1111112223 677788888877776 22211 222244455555432 3445566
Q ss_pred ---CCCCCeeeCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCccCCCCCccEEEeeCccc----cccCCccccCC
Q 037951 144 ---LYKLKQLALPMNNLTGGIPPFLGNLTSLEVVSLAGNPFGGNIPDSLGQLKELKTLGIGGNNL----SGSIPPSIYNL 216 (627)
Q Consensus 144 ---l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~----~~~~~~~l~~l 216 (627)
+++|+.|++.+ .++...+..|.+|++|+.+++.+|.+....+..|..+.++..+....+.. .......+.++
T Consensus 97 ~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~ 175 (329)
T 3sb4_A 97 TKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEG 175 (329)
T ss_dssp EEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEES
T ss_pred ccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccc
Confidence 78888888877 66655566677888888888888877766666777766666665544221 11122334444
Q ss_pred CCCc-EEEeecccCccCCChhhhhc---CCCCceeccCCccccccCCccccCCCCCcEeecccccccccCccCcCCCCCc
Q 037951 217 SFLV-IFSVSENQMHGSLPPSLGLY---FPNLKLFQTNENFFSGSIPISLSNASKLEYVEIASNSFFGKLSVNFGGMKNL 292 (627)
Q Consensus 217 ~~L~-~L~l~~n~l~~~~~~~~~~~---~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L 292 (627)
..|+ .+.+... +.++..+... ..++..+.+.+.-...........+++|+.+++++|.+.......
T Consensus 176 ~~L~~~i~~~~~---~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~a------- 245 (329)
T 3sb4_A 176 EPLETTIQVGAM---GKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFT------- 245 (329)
T ss_dssp CCCEEEEEECTT---CCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTT-------
T ss_pred cccceeEEecCC---CcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhh-------
Confidence 5554 3333221 1222222111 122222222221111000000012344444444444444444444
Q ss_pred CEEeccCccCCCCCCCCccccccCCCCCcccEEEccCcccccccchhHHhcccccc-EEEeecccccccCcccccCCCCC
Q 037951 293 SYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLSSQLQ-ILVLGTNQLYGSIPSGIGNLVNL 371 (627)
Q Consensus 293 ~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~-~L~l~~n~l~~~~~~~~~~l~~L 371 (627)
|.++++|+.+++.+| +....+.+|.++. +|+ .+++.+ .++...+.+|.++++|
T Consensus 246 -----------------------F~~~~~L~~l~l~~n-i~~I~~~aF~~~~-~L~~~l~l~~-~l~~I~~~aF~~c~~L 299 (329)
T 3sb4_A 246 -----------------------FAQKKYLLKIKLPHN-LKTIGQRVFSNCG-RLAGTLELPA-SVTAIEFGAFMGCDNL 299 (329)
T ss_dssp -----------------------TTTCTTCCEEECCTT-CCEECTTTTTTCT-TCCEEEEECT-TCCEECTTTTTTCTTE
T ss_pred -----------------------hhCCCCCCEEECCcc-cceehHHHhhCCh-hccEEEEEcc-cceEEchhhhhCCccC
Confidence 444555555555544 4333334444443 455 555555 4444445666677777
Q ss_pred CEEeCCCCccccccchhhcCCCCCcEee
Q 037951 372 YSLQTEENQFTGSIPKEMGKLLNLQGLD 399 (627)
Q Consensus 372 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~ 399 (627)
+.+++.+|.++...+.+|.++++|+.++
T Consensus 300 ~~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 300 RYVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp EEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred CEEEeCCCccCccchhhhcCCcchhhhc
Confidence 7777777776655566677777777665
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
Probab=99.65 E-value=1.3e-15 Score=138.74 Aligned_cols=155 Identities=23% Similarity=0.267 Sum_probs=93.3
Q ss_pred CEEECcCCcCcccCCccccccccCccEEEccCCccccCCCc-cccCCCCCCEEEccCCcccccCCccccCCCCCCEEECC
Q 037951 444 AILEMFANELSGTIPGDIFNISSLSVSLDLAENHFVGSIPP-RIGNLKALRCFDVSNNDLSGEIPSELGLCSSLEEIYLA 522 (627)
Q Consensus 444 ~~L~l~~n~l~~~~~~~~~~~~~ll~~L~l~~n~l~~~~~~-~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~ 522 (627)
+.++++++.+. .+|..+.. .+ ++|++++|.+.+..+. .+..+++|++|++++|++++..|..|..+++|++|+++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~--~l-~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 86 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL--HT-TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG 86 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT--TC-SEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CEEEcCCCCcC-cCccCCCC--CC-CEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence 56666666664 56654433 44 6677777766654443 36666777777777777765556666667777777777
Q ss_pred CCcccccCChhccCCCCCCEEECCCCcCccccchhcccCc-CCeeeCcCCcccccCCCCCccCCCCccccccCCCCcccC
Q 037951 523 ENFFNGFIPSFFRTSRGIRKVDLSRNNFFGQIPIFLEALS-LEYLNLSFNDFEGRLPTRGIFANASAISVGGCNRLCGGI 601 (627)
Q Consensus 523 ~n~i~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~~~-L~~L~ls~n~l~~~~p~~~~~~~l~~l~~~~n~~l~~~~ 601 (627)
+|.+++..+..|..+++|+.|++++|.+.+..|..+..++ |++|++++|++.+..+.......++...+.++...|+.+
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~~~~l~~~~~~~~~~~C~~P 166 (192)
T 1w8a_A 87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAP 166 (192)
T ss_dssp SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHHHHHHHCCSGGGCBBCSS
T ss_pred CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcchHHHHHHHHcCCCCCCCCCCCC
Confidence 7777666666666667777777777777666666666665 777777777666554422111122223334444455544
Q ss_pred C
Q 037951 602 H 602 (627)
Q Consensus 602 ~ 602 (627)
+
T Consensus 167 ~ 167 (192)
T 1w8a_A 167 S 167 (192)
T ss_dssp T
T ss_pred h
Confidence 3
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=5.5e-18 Score=180.32 Aligned_cols=201 Identities=18% Similarity=0.153 Sum_probs=145.0
Q ss_pred cCCCCCCEEeCCCCccccccchhhcCCCCCcEeeccCCc-------------ccccCChhhhCCCCCCEEE-ccCCcccc
Q 037951 366 GNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNH-------------FSGEIPSTLGNLSSLYEIF-LGDNNLSG 431 (627)
Q Consensus 366 ~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~-------------~~~~~~~~~~~~~~L~~L~-l~~n~~~~ 431 (627)
..++.|+.|++++|.++ .+|..++.+++|+.|++++|. ..+..|..++.+++|+.|+ ++.|.+.
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~- 423 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD- 423 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH-
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc-
Confidence 34567777777777776 567777777777777775554 2223333344444444444 3332221
Q ss_pred ccChhhcCCCCCCEEECcCCcCcccCCccccccccCccEEEccCCccccCCCccccCCCCCCEEEccCCcccccCCcccc
Q 037951 432 VIPSSLGNLERLAILEMFANELSGTIPGDIFNISSLSVSLDLAENHFVGSIPPRIGNLKALRCFDVSNNDLSGEIPSELG 511 (627)
Q Consensus 432 ~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~ll~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~ 511 (627)
.|+.+.+.+|.+.. ++. ..+ +.|++++|.+.+ +|. +..+++|+.|++++|.++ .+|..++
T Consensus 424 ----------~L~~l~l~~n~i~~-l~~-----~~L-~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~ 483 (567)
T 1dce_A 424 ----------DLRSKFLLENSVLK-MEY-----ADV-RVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALA 483 (567)
T ss_dssp ----------HHHHHHHHHHHHHH-HHH-----TTC-SEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGG
T ss_pred ----------hhhhhhhhcccccc-cCc-----cCc-eEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhh
Confidence 12222233333331 111 134 899999999986 565 999999999999999999 8899999
Q ss_pred CCCCCCEEECCCCcccccCChhccCCCCCCEEECCCCcCcccc-chhcccCc-CCeeeCcCCcccccCCCCC----ccCC
Q 037951 512 LCSSLEEIYLAENFFNGFIPSFFRTSRGIRKVDLSRNNFFGQI-PIFLEALS-LEYLNLSFNDFEGRLPTRG----IFAN 585 (627)
Q Consensus 512 ~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~ls~n~l~~~~-p~~~~~~~-L~~L~ls~n~l~~~~p~~~----~~~~ 585 (627)
.+++|+.|+|++|.+++ +| .+..+++|+.|++++|.+.+.. |..+..++ |+.|++++|++.+..|... .+++
T Consensus 484 ~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~ 561 (567)
T 1dce_A 484 ALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPS 561 (567)
T ss_dssp GCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTT
T ss_pred cCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcc
Confidence 99999999999999997 56 7999999999999999999876 88898888 9999999999998877542 2566
Q ss_pred CCccc
Q 037951 586 ASAIS 590 (627)
Q Consensus 586 l~~l~ 590 (627)
|+.++
T Consensus 562 L~~L~ 566 (567)
T 1dce_A 562 VSSIL 566 (567)
T ss_dssp CSEEE
T ss_pred cCccC
Confidence 66653
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
Probab=99.64 E-value=4.8e-16 Score=138.55 Aligned_cols=133 Identities=23% Similarity=0.186 Sum_probs=106.5
Q ss_pred CCCCCEEECCCCCCc-ccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEEccCccccccCCccccCCCCCCee
Q 037951 72 LSFLREINLMNNTIQ-GEIPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQL 150 (627)
Q Consensus 72 l~~L~~L~Ls~~~~~-~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L 150 (627)
.++|++|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|++.+..|..+..+++|++|
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 467889999999887 67787788888999999999888854 678888889999999998886677777778888888
Q ss_pred eCCCCCCCCCC-CCCCCCCCCCCEEECCCCCCCCCCC---CccCCCCCccEEEeeCcccc
Q 037951 151 ALPMNNLTGGI-PPFLGNLTSLEVVSLAGNPFGGNIP---DSLGQLKELKTLGIGGNNLS 206 (627)
Q Consensus 151 ~l~~n~l~~~~-~~~l~~l~~L~~L~L~~n~~~~~~~---~~l~~l~~L~~L~l~~n~~~ 206 (627)
++++|.+++.. +..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 88888887532 2677888888888888888875444 36777888888888887766
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=99.64 E-value=6.6e-17 Score=177.57 Aligned_cols=142 Identities=22% Similarity=0.277 Sum_probs=64.4
Q ss_pred chhhcCCCCCcEeeccCCcccccCChhhhCCCCCCEEEccCCccccccChhhcCCCCCCEEECcCCcCcccCCccccccc
Q 037951 386 PKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLGDNNLSGVIPSSLGNLERLAILEMFANELSGTIPGDIFNIS 465 (627)
Q Consensus 386 ~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~ 465 (627)
++.+..++.|+.|+|++|.+. .++..+..+++|++|+|++|.++ .+|..+..+++|+.|++++|.+. .+|..+..+.
T Consensus 217 ~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~ 293 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCF 293 (727)
T ss_dssp -----CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGT
T ss_pred hhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCC
Confidence 333444444444444444444 33333334444444444444444 34444444444555555555444 4444444444
Q ss_pred cCccEEEccCCccccCCCccccCCCCCCEEEccCCcccccCCccccCCCC-CCEEECCCCcccccCCh
Q 037951 466 SLSVSLDLAENHFVGSIPPRIGNLKALRCFDVSNNDLSGEIPSELGLCSS-LEEIYLAENFFNGFIPS 532 (627)
Q Consensus 466 ~ll~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~-L~~L~L~~n~i~~~~~~ 532 (627)
.| ++|++++|.+. .+|..|..+++|++|+|++|.+++.+|..+..+.. +..+++++|.+++.+|.
T Consensus 294 ~L-~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~ 359 (727)
T 4b8c_D 294 QL-KYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH 359 (727)
T ss_dssp TC-SEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_pred CC-CEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc
Confidence 44 45555555443 34444555555555555555555444444433211 11244555555544443
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.62 E-value=5.8e-15 Score=134.31 Aligned_cols=127 Identities=28% Similarity=0.374 Sum_probs=83.2
Q ss_pred CEEECCCCCCcccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEEccCccccccCCccccCCCCCCeeeCCCC
Q 037951 76 REINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPMN 155 (627)
Q Consensus 76 ~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n 155 (627)
+++++++++++ .+|..+. ++|++|++++|.++ .+|..|.++++|++|++++|.+++..+..|.++++|++|++++|
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 35666666665 4454443 46777777777766 55666677777777777777776655566666777777777777
Q ss_pred CCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCccCCCCCccEEEeeCcccc
Q 037951 156 NLTGGIPPFLGNLTSLEVVSLAGNPFGGNIPDSLGQLKELKTLGIGGNNLS 206 (627)
Q Consensus 156 ~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~ 206 (627)
.+++..+..|.++++|++|++++|.++...+..|..+++|+.|++++|.+.
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 766665666667777777777777776554555666666666666666654
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
Probab=99.61 E-value=5.7e-16 Score=134.97 Aligned_cols=128 Identities=22% Similarity=0.168 Sum_probs=102.4
Q ss_pred CCCCCEEECCCCCCc-ccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEEccCccccccCCccccCCCCCCee
Q 037951 72 LSFLREINLMNNTIQ-GEIPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQL 150 (627)
Q Consensus 72 l~~L~~L~Ls~~~~~-~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L 150 (627)
.+++++|++++|.++ +.+|..+..+++|++|++++|.+++. ..++++++|++|++++|.+++.+|..+..+++|++|
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 367889999999887 67788888899999999999988855 678888899999999998886677777788888888
Q ss_pred eCCCCCCCCC-CCCCCCCCCCCCEEECCCCCCCCCCC---CccCCCCCccEEEee
Q 037951 151 ALPMNNLTGG-IPPFLGNLTSLEVVSLAGNPFGGNIP---DSLGQLKELKTLGIG 201 (627)
Q Consensus 151 ~l~~n~l~~~-~~~~l~~l~~L~~L~L~~n~~~~~~~---~~l~~l~~L~~L~l~ 201 (627)
++++|.+++. .+..+..+++|++|++++|.+++..+ ..+..+++|+.|+++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 8888888752 33677888888888888888875544 367777788877765
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.60 E-value=8.5e-15 Score=131.58 Aligned_cols=131 Identities=31% Similarity=0.362 Sum_probs=68.4
Q ss_pred CCcccceeecCCCCcceecccccCCCCCCCEEECCCCCCcccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEE
Q 037951 47 CEWEGITCDLRSKALSGLLSPQIGNLSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLTVL 126 (627)
Q Consensus 47 c~~~~~~c~l~~~~l~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L 126 (627)
|+|.++.| ++++++.. |..+ .++|++|++++|++++..+..|..+++|++|++++|.+++..+..|.++++|++|
T Consensus 7 C~~~~l~~--~~~~l~~~-p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 81 (177)
T 2o6r_A 7 CSGTEIRC--NSKGLTSV-PTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTIL 81 (177)
T ss_dssp EETTEEEC--CSSCCSSC-CTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred eCCCEEEe--cCCCCccC-CCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEE
Confidence 56666644 34444432 2211 2456666666666654444445556666666666666654444445555556666
Q ss_pred EccCccccccCCccccCCCCCCeeeCCCCCCCCCCCCCCCCCCCCCEEECCCCCCC
Q 037951 127 VLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTGGIPPFLGNLTSLEVVSLAGNPFG 182 (627)
Q Consensus 127 ~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~ 182 (627)
++++|++++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.
T Consensus 82 ~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 82 YLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCee
Confidence 66555555444444455555555555555555433333444555555555555444
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.5e-14 Score=144.14 Aligned_cols=219 Identities=11% Similarity=0.039 Sum_probs=110.5
Q ss_pred CCCCceeccCCccccccCCccccCCCCCcEeecccccccccCccCcCCCCCcCEEeccCccC----CCCCCCCccccccC
Q 037951 241 FPNLKLFQTNENFFSGSIPISLSNASKLEYVEIASNSFFGKLSVNFGGMKNLSYLILEYNNL----GSGESDEMGFMNSL 316 (627)
Q Consensus 241 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l----~~~~~~~~~~~~~l 316 (627)
+++|+.+++.. .++...+.+|.+|++|+.+++.+|.+....+..|.++.++..+....... ..+. ..++
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~------~~~f 172 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWE------HFAF 172 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTT------TSCE
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccc------cccc
Confidence 55566666655 55544455666677777777777766666666666666666555544211 1111 1133
Q ss_pred CCCCccc-EEEccCcccccccchhHHhc---cccccEEEeecccccccCcccccCCCCCCEEeCCCCccccccchhhcCC
Q 037951 317 ANCSKLQ-VLSLGGNQFRGALPHSIANL---SSQLQILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSIPKEMGKL 392 (627)
Q Consensus 317 ~~~~~L~-~L~l~~n~~~~~~~~~~~~~---~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l 392 (627)
.++..|+ .+.+.... .++..+... ..++..+.+.++-...........+++|+.+++.+|+++.....+|.+|
T Consensus 173 ~~~~~L~~~i~~~~~~---~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~ 249 (329)
T 3sb4_A 173 IEGEPLETTIQVGAMG---KLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQK 249 (329)
T ss_dssp EESCCCEEEEEECTTC---CHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTC
T ss_pred ccccccceeEEecCCC---cHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCC
Confidence 3444555 34333221 112221111 1244555554432111111111125566666666666654445556666
Q ss_pred CCCcEeeccCCcccccCChhhhCCCCCC-EEEccCCccccccChhhcCCCCCCEEECcCCcCcccCCccccccccCccEE
Q 037951 393 LNLQGLDFGGNHFSGEIPSTLGNLSSLY-EIFLGDNNLSGVIPSSLGNLERLAILEMFANELSGTIPGDIFNISSLSVSL 471 (627)
Q Consensus 393 ~~L~~L~L~~n~~~~~~~~~~~~~~~L~-~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~ll~~L 471 (627)
++|+.+++.+| +...-..+|.+|++|+ .+++.+ .++...+.+|.+|++|+.+++..|.+...-+..|.++.++ +.+
T Consensus 250 ~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L-~~l 326 (329)
T 3sb4_A 250 KYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPS-KLI 326 (329)
T ss_dssp TTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCC-CEE
T ss_pred CCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcch-hhh
Confidence 66666666665 4444445566666666 666655 5554555566666666666666666653333445555555 444
Q ss_pred E
Q 037951 472 D 472 (627)
Q Consensus 472 ~ 472 (627)
+
T Consensus 327 y 327 (329)
T 3sb4_A 327 Y 327 (329)
T ss_dssp E
T ss_pred c
Confidence 3
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
Probab=99.58 E-value=8.8e-15 Score=130.27 Aligned_cols=130 Identities=16% Similarity=0.167 Sum_probs=68.2
Q ss_pred CCCEEECcCCcCc-ccCCccccccccCccEEEccCCccccCCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEE
Q 037951 442 RLAILEMFANELS-GTIPGDIFNISSLSVSLDLAENHFVGSIPPRIGNLKALRCFDVSNNDLSGEIPSELGLCSSLEEIY 520 (627)
Q Consensus 442 ~L~~L~l~~n~l~-~~~~~~~~~~~~ll~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ 520 (627)
+|+.|++++|.+. +.+|..+..++.+ ++|++++|.+.+. ..+..+++|++|++++|.+++.+|..+..+++|++|+
T Consensus 25 ~L~~L~l~~n~l~~~~i~~~~~~l~~L-~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 25 AVRELVLDNCKSNDGKIEGLTAEFVNL-EFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp SCSEEECCSCBCBTTBCSSCCGGGGGC-CEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred cCCEEECCCCCCChhhHHHHHHhCCCC-CEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 3444444444443 3344434444444 4444444444433 3455556666666666666544555555566666666
Q ss_pred CCCCcccccC-ChhccCCCCCCEEECCCCcCccccc---hhcccCc-CCeeeCcCCccc
Q 037951 521 LAENFFNGFI-PSFFRTSRGIRKVDLSRNNFFGQIP---IFLEALS-LEYLNLSFNDFE 574 (627)
Q Consensus 521 L~~n~i~~~~-~~~l~~l~~L~~L~ls~n~l~~~~p---~~~~~~~-L~~L~ls~n~l~ 574 (627)
+++|.+++.. +..+..+++|+.|++++|.+.+..+ ..+..++ |++|++++|.+.
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 6666665432 1455566666666666666654333 2444444 666666666554
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.9e-14 Score=129.35 Aligned_cols=130 Identities=22% Similarity=0.172 Sum_probs=95.3
Q ss_pred CCEEECCCCCCcccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEEccCccccccCCccccCCCCCCeeeCCC
Q 037951 75 LREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPM 154 (627)
Q Consensus 75 L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~ 154 (627)
.+.+++++++++ .+|..+ .++|++|++++|++++..+..|.++++|++|++++|++++..+..+..+++|++|++++
T Consensus 9 ~~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 9 GTEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TTEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 467888888887 455444 36888888888888866666678888888888888888766666677788888888888
Q ss_pred CCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCccCCCCCccEEEeeCccccc
Q 037951 155 NNLTGGIPPFLGNLTSLEVVSLAGNPFGGNIPDSLGQLKELKTLGIGGNNLSG 207 (627)
Q Consensus 155 n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~ 207 (627)
|.+++..+..+.++++|++|++++|.+++..+..+..+++|++|++++|.+.+
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence 88776666667777777777777777775555555667777777777776654
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.57 E-value=2.3e-14 Score=130.33 Aligned_cols=131 Identities=24% Similarity=0.273 Sum_probs=114.8
Q ss_pred CCcccceeecCCCCcceecccccCCCCCCCEEECCCCCCcccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEE
Q 037951 47 CEWEGITCDLRSKALSGLLSPQIGNLSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLTVL 126 (627)
Q Consensus 47 c~~~~~~c~l~~~~l~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L 126 (627)
|.|.. .++++++++.. |..+. +++++|++++|.++ .+|..|..+++|++|++++|.+++..+..|.++++|++|
T Consensus 10 C~~~~--l~~~~~~l~~i-p~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L 83 (193)
T 2wfh_A 10 CLDTV--VRCSNKGLKVL-PKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTL 83 (193)
T ss_dssp EETTE--EECTTSCCSSC-CSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred eCCCE--EEcCCCCCCcC-CCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEE
Confidence 44543 46677777754 44443 68999999999998 778899999999999999999998888889999999999
Q ss_pred EccCccccccCCccccCCCCCCeeeCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCC
Q 037951 127 VLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTGGIPPFLGNLTSLEVVSLAGNPFGG 183 (627)
Q Consensus 127 ~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~ 183 (627)
++++|+++...+..|..+++|++|++++|.++...+..|..+++|++|++++|.+..
T Consensus 84 ~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 84 ILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp ECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred ECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 999999998888899999999999999999997767779999999999999999874
|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.5e-13 Score=140.47 Aligned_cols=237 Identities=11% Similarity=0.037 Sum_probs=139.4
Q ss_pred ccCCCCCccEEEeeCccccccCCccccCCCCCcEEEeecccCccCCChhhhhcCCCCceeccCCccccccCCccccCCCC
Q 037951 188 SLGQLKELKTLGIGGNNLSGSIPPSIYNLSFLVIFSVSENQMHGSLPPSLGLYFPNLKLFQTNENFFSGSIPISLSNASK 267 (627)
Q Consensus 188 ~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~ 267 (627)
.|.++++|+.+.+..+.. ..-...|..+.+|+.+++..+ +. .++...+..+..|+.+.+..+... +.........
T Consensus 157 aF~~c~~L~~i~l~~~~~-~I~~~~F~~c~~L~~i~l~~~-~~-~I~~~~F~~~~~L~~i~~~~~~~~--i~~~~~~~~~ 231 (394)
T 4fs7_A 157 AFATCESLEYVSLPDSME-TLHNGLFSGCGKLKSIKLPRN-LK-IIRDYCFAECILLENMEFPNSLYY--LGDFALSKTG 231 (394)
T ss_dssp TTTTCTTCCEEECCTTCC-EECTTTTTTCTTCCBCCCCTT-CC-EECTTTTTTCTTCCBCCCCTTCCE--ECTTTTTTCC
T ss_pred hhcccCCCcEEecCCccc-eeccccccCCCCceEEEcCCC-ce-EeCchhhccccccceeecCCCceE--eehhhcccCC
Confidence 344444455444443321 122333444444554444333 11 222233333455555554443221 1222334556
Q ss_pred CcEeecccccccccCccCcCCCCCcCEEeccCccCCCCCCCCccccccCCCCCcccEEEccCcccccccchhHHhccccc
Q 037951 268 LEYVEIASNSFFGKLSVNFGGMKNLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLSSQL 347 (627)
Q Consensus 268 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L 347 (627)
|+.+.+... ........+..+..++.+.+..+...- . ...+..+..++.+......+. ...+.... +|
T Consensus 232 l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~i-~------~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~-~L 299 (394)
T 4fs7_A 232 VKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLRI-G------GSLFYNCSGLKKVIYGSVIVP---EKTFYGCS-SL 299 (394)
T ss_dssp CCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCEE-C------SCTTTTCTTCCEEEECSSEEC---TTTTTTCT-TC
T ss_pred CceEEECCC-ceecccccccccccceeEEcCCCccee-e------ccccccccccceeccCceeec---cccccccc-cc
Confidence 777766533 233344556777778877776553221 1 235667777777777665432 22344444 78
Q ss_pred cEEEeecccccccCcccccCCCCCCEEeCCCCccccccchhhcCCCCCcEeeccCCcccccCChhhhCCCCCCEEEccCC
Q 037951 348 QILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLGDN 427 (627)
Q Consensus 348 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n 427 (627)
+.+.+..+ +......+|.++++|+.+++.++ ++.....+|.+|++|+.+++..+ ++..-..+|.+|++|+.+++..+
T Consensus 300 ~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 300 TEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp CEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred cccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence 88888765 44455677889999999999754 55556678999999999999876 66566678999999999999765
Q ss_pred ccccccChhhcCCCCCCEE
Q 037951 428 NLSGVIPSSLGNLERLAIL 446 (627)
Q Consensus 428 ~~~~~~~~~l~~l~~L~~L 446 (627)
- . ....+|.++++|+.+
T Consensus 377 ~-~-~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 377 L-E-QYRYDFEDTTKFKWI 393 (394)
T ss_dssp G-G-GGGGGBCTTCEEEEE
T ss_pred C-E-EhhheecCCCCCcEE
Confidence 3 2 234568888888764
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
Probab=99.56 E-value=5.3e-15 Score=128.79 Aligned_cols=64 Identities=13% Similarity=0.068 Sum_probs=31.2
Q ss_pred CccccCCCCCCEEEccCCccccc-CCccccCCCCCCEEECCCCcccccCC---hhccCCCCCCEEECC
Q 037951 483 PPRIGNLKALRCFDVSNNDLSGE-IPSELGLCSSLEEIYLAENFFNGFIP---SFFRTSRGIRKVDLS 546 (627)
Q Consensus 483 ~~~l~~l~~L~~L~Ls~n~l~~~-~~~~l~~l~~L~~L~L~~n~i~~~~~---~~l~~l~~L~~L~ls 546 (627)
|..+..+++|++|++++|.+++. .+..++.+++|++|++++|.+++..+ ..+..+++|+.||++
T Consensus 81 ~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 81 EVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp HHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred HHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 33334445555555555555421 12445555555555555555554433 344555555555544
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Probab=99.56 E-value=4.8e-13 Score=135.97 Aligned_cols=266 Identities=16% Similarity=0.142 Sum_probs=162.0
Q ss_pred CCCCEEECCCCCCcccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEEccCccccccCCccccCCCCCCeeeC
Q 037951 73 SFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLAL 152 (627)
Q Consensus 73 ~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l 152 (627)
+.++.+.+... ++.....+|.++ +|+.+.+..+ ++.+-..+|.++ +|+.+.+.. .+......+|.++.+|+.+++
T Consensus 113 ~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l 187 (401)
T 4fdw_A 113 KGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADL 187 (401)
T ss_dssp SSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEEC
T ss_pred CCccEEEECCc-cCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeec
Confidence 55666666543 333445556654 5777776654 554555556663 577777664 455455566667777777777
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCccCCCCCccEEEeeCccccccCCccccCCCCCcEEEeecccCccC
Q 037951 153 PMNNLTGGIPPFLGNLTSLEVVSLAGNPFGGNIPDSLGQLKELKTLGIGGNNLSGSIPPSIYNLSFLVIFSVSENQMHGS 232 (627)
Q Consensus 153 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~ 232 (627)
++|.++......|. +.+|+.+.+..+ +..+...+|.++++|+.+++..+ ++..-..+|.. .+|+.+.+.. .+. .
T Consensus 188 ~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp~-~i~-~ 261 (401)
T 4fdw_A 188 SKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLPN-GVT-N 261 (401)
T ss_dssp TTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEET-TCC-E
T ss_pred CCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeCC-Ccc-E
Confidence 76666643333444 466777776643 44455556666677777776653 33333444444 5666666633 333 3
Q ss_pred CChhhhhcCCCCceeccCCcccc-----ccCCccccCCCCCcEeecccccccccCccCcCCCCCcCEEeccCccCCCCCC
Q 037951 233 LPPSLGLYFPNLKLFQTNENFFS-----GSIPISLSNASKLEYVEIASNSFFGKLSVNFGGMKNLSYLILEYNNLGSGES 307 (627)
Q Consensus 233 ~~~~~~~~~~~L~~L~l~~~~~~-----~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~ 307 (627)
++...+..+++|+.+.+.++... ...+..|.+|++|+.+++.+ .+.......|.++.+|+.+.+..+ ++.+..
T Consensus 262 I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~ 339 (401)
T 4fdw_A 262 IASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINF 339 (401)
T ss_dssp ECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECT
T ss_pred EChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcH
Confidence 44444444667777776665543 34455677788888888874 466666677888888888888554 444332
Q ss_pred CCccccccCCCCCcccEEEccCcccccccchhHHhccccccEEEeeccccc
Q 037951 308 DEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLSSQLQILVLGTNQLY 358 (627)
Q Consensus 308 ~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 358 (627)
.+|.++ +|+.+++.+|.........|..++..++.|++..+.+.
T Consensus 340 ------~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 340 ------SAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp ------TSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred ------HhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHH
Confidence 367777 88888888887765555666666557778887776543
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Probab=99.55 E-value=3.8e-13 Score=136.68 Aligned_cols=268 Identities=10% Similarity=0.065 Sum_probs=200.0
Q ss_pred CCCCCCCEEeCCCCcCcccCCccccCCCCCCEEEccCccccccCCccccCCCCCCeeeCCCCCCCCCCCCCCCCCCCCCE
Q 037951 94 GRLRRLETLLLSDNSLVGKIPANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTGGIPPFLGNLTSLEV 173 (627)
Q Consensus 94 ~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 173 (627)
..+..++.+.+.. .++.+-..+|.++ +|+.+.+..+ ++.....+|.++ +|+.+.+.. .+.......|.+|++|+.
T Consensus 110 ~~~~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~ 184 (401)
T 4fdw_A 110 EILKGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKK 184 (401)
T ss_dssp EECSSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCE
T ss_pred EecCCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCe
Confidence 3457888888866 4665667778875 7999999876 665667778774 799999986 566566678899999999
Q ss_pred EECCCCCCCCCCCCccCCCCCccEEEeeCccccccCCccccCCCCCcEEEeecccCccCCChhhhhcCCCCceeccCCcc
Q 037951 174 VSLAGNPFGGNIPDSLGQLKELKTLGIGGNNLSGSIPPSIYNLSFLVIFSVSENQMHGSLPPSLGLYFPNLKLFQTNENF 253 (627)
Q Consensus 174 L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~~~ 253 (627)
+++.+|.+.......|. ..+|+.+.+..+ +...-..+|.++++|+.+++..+ +. .++...+.. .+|+.+.+. +.
T Consensus 185 l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~-~I~~~aF~~-~~L~~i~lp-~~ 258 (401)
T 4fdw_A 185 ADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VS-TIGQEAFRE-SGITTVKLP-NG 258 (401)
T ss_dssp EECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CC-EECTTTTTT-CCCSEEEEE-TT
T ss_pred eecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-cc-Ccccccccc-CCccEEEeC-CC
Confidence 99999888865556666 588999999854 66566778889999999998864 33 344444443 688888884 44
Q ss_pred ccccCCccccCCCCCcEeeccccccc-----ccCccCcCCCCCcCEEeccCccCCCCCCCCccccccCCCCCcccEEEcc
Q 037951 254 FSGSIPISLSNASKLEYVEIASNSFF-----GKLSVNFGGMKNLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLG 328 (627)
Q Consensus 254 ~~~~~~~~l~~~~~L~~L~l~~~~~~-----~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~ 328 (627)
++.....+|.+|++|+.+++.++... ......|.++++|+.+.+.. .++.+.. .+|.+|++|+.+.+.
T Consensus 259 i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~------~aF~~c~~L~~l~lp 331 (401)
T 4fdw_A 259 VTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQ------GLLGGNRKVTQLTIP 331 (401)
T ss_dssp CCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECT------TTTTTCCSCCEEEEC
T ss_pred ccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhh------hhhcCCCCccEEEEC
Confidence 55555677888999999999887654 45566788999999999984 4665443 368888999999996
Q ss_pred CcccccccchhHHhccccccEEEeecccccccCcccccCCC-CCCEEeCCCCccc
Q 037951 329 GNQFRGALPHSIANLSSQLQILVLGTNQLYGSIPSGIGNLV-NLYSLQTEENQFT 382 (627)
Q Consensus 329 ~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~~~ 382 (627)
.+ ++.....+|.++ +|+.+++.+|.........|.+++ .++.+++..+.+.
T Consensus 332 ~~-l~~I~~~aF~~~--~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 332 AN-VTQINFSAFNNT--GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp TT-CCEECTTSSSSS--CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred cc-ccEEcHHhCCCC--CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHH
Confidence 65 665556667666 799999999888766667777774 7888888876644
|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.55 E-value=3.1e-13 Score=138.14 Aligned_cols=236 Identities=14% Similarity=0.086 Sum_probs=158.9
Q ss_pred CccccCCCCCcEEEeecccCccCCChhhhhcCCCCceeccCCccccccCCccccCCCCCcEeecccccccccCccCcCCC
Q 037951 210 PPSIYNLSFLVIFSVSENQMHGSLPPSLGLYFPNLKLFQTNENFFSGSIPISLSNASKLEYVEIASNSFFGKLSVNFGGM 289 (627)
Q Consensus 210 ~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l 289 (627)
..+|.++++|+.+.+..+.. .++...+..+.+|+.+.+..+ ++......+.++..|+.+.+..+... ........
T Consensus 155 ~~aF~~c~~L~~i~l~~~~~--~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~--i~~~~~~~ 229 (394)
T 4fs7_A 155 DEAFATCESLEYVSLPDSME--TLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY--LGDFALSK 229 (394)
T ss_dssp TTTTTTCTTCCEEECCTTCC--EECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE--ECTTTTTT
T ss_pred hhhhcccCCCcEEecCCccc--eeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceE--eehhhccc
Confidence 45688888999988875532 355555566888888888765 44444566778888888887665432 22223345
Q ss_pred CCcCEEeccCccCCCCCCCCccccccCCCCCcccEEEccCcccccccchhHHhccccccEEEeecccccccCcccccCCC
Q 037951 290 KNLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLSSQLQILVLGTNQLYGSIPSGIGNLV 369 (627)
Q Consensus 290 ~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~ 369 (627)
..|+.+.+... ++.+. ...+.++..++.+.+..+... .....+.... .++.+......+ ....+..+.
T Consensus 230 ~~l~~i~ip~~-~~~i~------~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~-~l~~~~~~~~~i---~~~~F~~~~ 297 (394)
T 4fs7_A 230 TGVKNIIIPDS-FTELG------KSVFYGCTDLESISIQNNKLR-IGGSLFYNCS-GLKKVIYGSVIV---PEKTFYGCS 297 (394)
T ss_dssp CCCCEEEECTT-CCEEC------SSTTTTCSSCCEEEECCTTCE-ECSCTTTTCT-TCCEEEECSSEE---CTTTTTTCT
T ss_pred CCCceEEECCC-ceecc------cccccccccceeEEcCCCcce-eecccccccc-ccceeccCceee---ccccccccc
Confidence 67888877543 22211 235677888888888776443 4444555554 677777765543 234677888
Q ss_pred CCCEEeCCCCccccccchhhcCCCCCcEeeccCCcccccCChhhhCCCCCCEEEccCCccccccChhhcCCCCCCEEECc
Q 037951 370 NLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLGDNNLSGVIPSSLGNLERLAILEMF 449 (627)
Q Consensus 370 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~ 449 (627)
+|+.+.+.++ ++.....+|.+|++|+.+++..+ ++..-..+|.+|.+|+.+++..+ ++.....+|.+|++|+.+++.
T Consensus 298 ~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp 374 (394)
T 4fs7_A 298 SLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELP 374 (394)
T ss_dssp TCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEE
T ss_pred cccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEEC
Confidence 9999988765 55455677888999999998754 55455678888999999999776 665667788899999999887
Q ss_pred CCcCcccCCccccccccC
Q 037951 450 ANELSGTIPGDIFNISSL 467 (627)
Q Consensus 450 ~n~l~~~~~~~~~~~~~l 467 (627)
.+ +. .+...+..+.++
T Consensus 375 ~~-~~-~~~~~F~~c~~L 390 (394)
T 4fs7_A 375 KR-LE-QYRYDFEDTTKF 390 (394)
T ss_dssp GG-GG-GGGGGBCTTCEE
T ss_pred CC-CE-EhhheecCCCCC
Confidence 54 22 233455555555
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
Probab=99.50 E-value=2e-14 Score=128.91 Aligned_cols=132 Identities=23% Similarity=0.255 Sum_probs=85.2
Q ss_pred ccCCCCCCCEEECCCCCCcccCCcccCCCC-CCCEEeCCCCcCcccCCccccCCCCCCEEEccCccccccCCccccCCCC
Q 037951 68 QIGNLSFLREINLMNNTIQGEIPLEFGRLR-RLETLLLSDNSLVGKIPANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYK 146 (627)
Q Consensus 68 ~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~-~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~ 146 (627)
.+.+..+|++|++++|.++ .++. +..+. +|++|++++|.+++. ..+..+++|++|++++|.+++..+..+..+++
T Consensus 14 ~~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 89 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPD 89 (176)
T ss_dssp EEECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred hcCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCC
Confidence 3455677778888888776 3443 44443 778888887777754 46777777777777777777544444567777
Q ss_pred CCeeeCCCCCCCCCCCC--CCCCCCCCCEEECCCCCCCCCCCCc----cCCCCCccEEEeeCccc
Q 037951 147 LKQLALPMNNLTGGIPP--FLGNLTSLEVVSLAGNPFGGNIPDS----LGQLKELKTLGIGGNNL 205 (627)
Q Consensus 147 L~~L~l~~n~l~~~~~~--~l~~l~~L~~L~L~~n~~~~~~~~~----l~~l~~L~~L~l~~n~~ 205 (627)
|++|++++|.++ .+|. .+..+++|++|++++|.+. ..|.. +..+++|+.|+++.|..
T Consensus 90 L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 90 LTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp CCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred CCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCH
Confidence 777777777775 3443 5666666777777776665 23332 55566666666665544
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
Probab=99.47 E-value=1.1e-13 Score=124.13 Aligned_cols=62 Identities=19% Similarity=0.218 Sum_probs=25.4
Q ss_pred cCCCCCCEEEccCCcccccCCc--cccCCCCCCEEECCCCcccccCCh----hccCCCCCCEEECCCCcC
Q 037951 487 GNLKALRCFDVSNNDLSGEIPS--ELGLCSSLEEIYLAENFFNGFIPS----FFRTSRGIRKVDLSRNNF 550 (627)
Q Consensus 487 ~~l~~L~~L~Ls~n~l~~~~~~--~l~~l~~L~~L~L~~n~i~~~~~~----~l~~l~~L~~L~ls~n~l 550 (627)
..+++|++|++++|.++ .+|. .+..+++|+.|++++|.++.. |. .+..+++|+.||+++|..
T Consensus 85 ~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~~-~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 85 QALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTNK-KHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp HHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGGS-TTHHHHHHHHCTTCSEETTEECCH
T ss_pred hcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCCc-HhHHHHHHHHCCccceeCCCcCCH
Confidence 33444444444444443 2332 344444444444444444322 22 234444444444444433
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
Probab=99.44 E-value=1.5e-15 Score=139.14 Aligned_cols=147 Identities=24% Similarity=0.283 Sum_probs=72.8
Q ss_pred CCCCcEeeccCCcccccCCh------hhhCCCCCCEEEccCCccccccChhhcCCCCCCEEECcCCcCcccCCccccccc
Q 037951 392 LLNLQGLDFGGNHFSGEIPS------TLGNLSSLYEIFLGDNNLSGVIPSSLGNLERLAILEMFANELSGTIPGDIFNIS 465 (627)
Q Consensus 392 l~~L~~L~L~~n~~~~~~~~------~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~ 465 (627)
...++.++++.+.+.+..|. .+..+++|++|++++|.+++ +| .+..+++|+.|++++|.+. .+|..+..++
T Consensus 17 ~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~ 93 (198)
T 1ds9_A 17 RKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVAD 93 (198)
T ss_dssp TTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHH
T ss_pred cccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCC
Confidence 33444444444444433333 45555555555555555553 33 4555555555555555554 4444444444
Q ss_pred cCccEEEccCCccccCCCccccCCCCCCEEEccCCcccccCC-ccccCCCCCCEEECCCCcccccCCh----------hc
Q 037951 466 SLSVSLDLAENHFVGSIPPRIGNLKALRCFDVSNNDLSGEIP-SELGLCSSLEEIYLAENFFNGFIPS----------FF 534 (627)
Q Consensus 466 ~ll~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~L~~n~i~~~~~~----------~l 534 (627)
.+ ++|++++|++.+ +| .+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+++..|. .+
T Consensus 94 ~L-~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~ 170 (198)
T 1ds9_A 94 TL-EELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVV 170 (198)
T ss_dssp HC-SEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHH
T ss_pred cC-CEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHH
Confidence 44 455555555543 22 34455555555555555552111 2455555556666665555544332 24
Q ss_pred cCCCCCCEEE
Q 037951 535 RTSRGIRKVD 544 (627)
Q Consensus 535 ~~l~~L~~L~ 544 (627)
..+++|+.||
T Consensus 171 ~~l~~L~~Ld 180 (198)
T 1ds9_A 171 KRLPNLKKLD 180 (198)
T ss_dssp HHCSSCSEEC
T ss_pred HhCCCcEEEC
Confidence 4555555554
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
Probab=99.42 E-value=1.2e-12 Score=116.34 Aligned_cols=105 Identities=27% Similarity=0.289 Sum_probs=70.6
Q ss_pred CEEECCCCCCcccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEEccCccccccCCccccCCCCCCeeeCCCC
Q 037951 76 REINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPMN 155 (627)
Q Consensus 76 ~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n 155 (627)
++++++++.++ .+|..+. ++|++|+|++|.+++..|..|.++++|++|++++|++++..+..|..+++|++|++++|
T Consensus 12 ~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 12 TTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 55677777776 4555443 67777777777777666666777777777777777777555555666777777777777
Q ss_pred CCCCCCCCCCCCCCCCCEEECCCCCCCC
Q 037951 156 NLTGGIPPFLGNLTSLEVVSLAGNPFGG 183 (627)
Q Consensus 156 ~l~~~~~~~l~~l~~L~~L~L~~n~~~~ 183 (627)
.+++..+..|.++++|++|++++|.+..
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNPWDC 116 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence 7665555556666677777777666653
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
Probab=99.42 E-value=3.4e-15 Score=136.87 Aligned_cols=133 Identities=17% Similarity=0.181 Sum_probs=97.1
Q ss_pred hhcCCCCCcEeeccCCcccccCChhhhCCCCCCEEEccCCccccccChhhcCCCCCCEEECcCCcCcccCCccccccccC
Q 037951 388 EMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLGDNNLSGVIPSSLGNLERLAILEMFANELSGTIPGDIFNISSL 467 (627)
Q Consensus 388 ~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l 467 (627)
.+..+++|+.|++++|.+.+ +| .+..+++|++|++++|.++ .+|..+..+++|+.|++++|.+.+ +| .+..++.+
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L 117 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNL 117 (198)
T ss_dssp HHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHS
T ss_pred HHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCC
Confidence 66777777777777777764 45 6667777777777777777 456666666777888887777764 44 46667777
Q ss_pred ccEEEccCCccccCCC-ccccCCCCCCEEEccCCcccccCCc----------cccCCCCCCEEECCCCcccc
Q 037951 468 SVSLDLAENHFVGSIP-PRIGNLKALRCFDVSNNDLSGEIPS----------ELGLCSSLEEIYLAENFFNG 528 (627)
Q Consensus 468 l~~L~l~~n~l~~~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~----------~l~~l~~L~~L~L~~n~i~~ 528 (627)
++|++++|.+.+..+ ..+..+++|++|++++|.+.+..|. .+..+++|+.|+ ++.++.
T Consensus 118 -~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~ 186 (198)
T 1ds9_A 118 -RVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDV 186 (198)
T ss_dssp -SEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred -CEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence 788888888764322 3578889999999999998766554 278899999886 777654
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.40 E-value=2e-12 Score=115.20 Aligned_cols=104 Identities=26% Similarity=0.273 Sum_probs=75.6
Q ss_pred CEEECCCCCCcccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEEccCccccccCCccccCCCCCCeeeCCCC
Q 037951 76 REINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPMN 155 (627)
Q Consensus 76 ~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n 155 (627)
+.++++++.++ .+|..+. ++|++|+|++|++++..|..|.++++|++|++++|++++..+..|.++++|++|++++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 56777877775 5666554 77888888888887766777778888888888888777555555677777777777777
Q ss_pred CCCCCCCCCCCCCCCCCEEECCCCCCC
Q 037951 156 NLTGGIPPFLGNLTSLEVVSLAGNPFG 182 (627)
Q Consensus 156 ~l~~~~~~~l~~l~~L~~L~L~~n~~~ 182 (627)
.+++..+..+.++++|++|++++|.+.
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcc
Confidence 777555555777777777777777766
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
Probab=99.38 E-value=3.2e-12 Score=113.54 Aligned_cols=105 Identities=27% Similarity=0.259 Sum_probs=73.6
Q ss_pred CCEEeCCCCcCcccCCccccCCCCCCEEEccCccccccCCccccCCCCCCeeeCCCCCCCCCCCCCCCCCCCCCEEECCC
Q 037951 99 LETLLLSDNSLVGKIPANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTGGIPPFLGNLTSLEVVSLAG 178 (627)
Q Consensus 99 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~ 178 (627)
.+.+++++|.++ .+|..+. ++|++|++++|++++..+..|.++++|++|++++|.+++..+..|.++++|++|++++
T Consensus 11 ~~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 467778777777 4565543 6777777777777766677777777777777777777765555667777777777777
Q ss_pred CCCCCCCCCccCCCCCccEEEeeCcccc
Q 037951 179 NPFGGNIPDSLGQLKELKTLGIGGNNLS 206 (627)
Q Consensus 179 n~~~~~~~~~l~~l~~L~~L~l~~n~~~ 206 (627)
|++++..+..|..+++|++|++++|.+.
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 7777555556666777777777776665
|
| >4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} | Back alignment and structure |
|---|
Probab=99.36 E-value=9e-11 Score=119.77 Aligned_cols=329 Identities=11% Similarity=0.104 Sum_probs=142.4
Q ss_pred CcccCCCC-CCCEEeCCCCcCcccCCccccCCCCCCEEEccCcc---ccccCCccccCCCCCCeeeCCCCCCCCCCCCCC
Q 037951 90 PLEFGRLR-RLETLLLSDNSLVGKIPANLSYCSRLTVLVLGNNK---LVGSIPFEFVSLYKLKQLALPMNNLTGGIPPFL 165 (627)
Q Consensus 90 ~~~~~~l~-~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ls~n~---l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l 165 (627)
..+|.++. .|+.+.+..+ ++.+-..+|.++.+|+.+.+..+. ++.....+|.++.+|+.+.+..+ ++......|
T Consensus 56 ~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF 133 (394)
T 4gt6_A 56 DRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAF 133 (394)
T ss_dssp TTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTT
T ss_pred HhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhh
Confidence 44555553 4666666543 444555566666666666665542 44444555666666666665543 222334456
Q ss_pred CCCCCCCEEECCCCCCCCCCCCccCCCCCccEEEeeCccccccCCccccCCCCCcEEEeecccCccCCChhhhhcCCCCc
Q 037951 166 GNLTSLEVVSLAGNPFGGNIPDSLGQLKELKTLGIGGNNLSGSIPPSIYNLSFLVIFSVSENQMHGSLPPSLGLYFPNLK 245 (627)
Q Consensus 166 ~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~ 245 (627)
..+.+|+.+.+..+. .......|..+..|+.+.+..+ +...-..+|. ...|+.+.+..+... +....+..+.++.
T Consensus 134 ~~c~~L~~i~lp~~~-~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~-~~~l~~i~ip~~~~~--i~~~af~~c~~l~ 208 (394)
T 4gt6_A 134 HHCEELDTVTIPEGV-TSVADGMFSYCYSLHTVTLPDS-VTAIEERAFT-GTALTQIHIPAKVTR--IGTNAFSECFALS 208 (394)
T ss_dssp TTCTTCCEEECCTTC-CEECTTTTTTCTTCCEEECCTT-CCEECTTTTT-TCCCSEEEECTTCCE--ECTTTTTTCTTCC
T ss_pred hhhccccccccccee-eeecccceecccccccccccce-eeEecccccc-ccceeEEEECCcccc--cccchhhhccccc
Confidence 666667766665432 2234455666666666666543 2212222332 345666555433211 1111111133333
Q ss_pred eeccCCccccccCCccccCCCCCcEeecccccccccCccCcCCCCCcCEEeccCccCCCCCCCCccccccCCCCCcccEE
Q 037951 246 LFQTNENFFSGSIPISLSNASKLEYVEIASNSFFGKLSVNFGGMKNLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVL 325 (627)
Q Consensus 246 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L 325 (627)
................+........ ....+.....+..+.+... ++.+. ..+|.++..|+.+
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~ip~~-v~~i~------~~aF~~c~~L~~i 270 (394)
T 4gt6_A 209 TITSDSESYPAIDNVLYEKSANGDY-----------ALIRYPSQREDPAFKIPNG-VARIE------THAFDSCAYLASV 270 (394)
T ss_dssp EEEECCSSSCBSSSCEEEECTTSCE-----------EEEECCTTCCCSEEECCTT-EEEEC------TTTTTTCSSCCEE
T ss_pred eecccccccccccceeecccccccc-----------cccccccccccceEEcCCc-ceEcc------cceeeecccccEE
Confidence 3322221111000000000000000 0000111112222222110 11100 1245555556665
Q ss_pred EccCcccccccchhHHhccccccEEEeecccccccCcccccCCCCCCEEeCCCCccccccchhhcCCCCCcEeeccCCcc
Q 037951 326 SLGGNQFRGALPHSIANLSSQLQILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHF 405 (627)
Q Consensus 326 ~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~ 405 (627)
.+..+... .....|.... .|+.+.+.. .++.....+|.++.+|+.+++..+ ++.....+|.+|.+|+.+.+..+ +
T Consensus 271 ~lp~~~~~-I~~~aF~~c~-~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v 345 (394)
T 4gt6_A 271 KMPDSVVS-IGTGAFMNCP-ALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-V 345 (394)
T ss_dssp ECCTTCCE-ECTTTTTTCT-TCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-C
T ss_pred ecccccce-ecCccccccc-ccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-c
Confidence 55443221 2233333333 455555532 233233445666666666666543 33344455666666666666543 4
Q ss_pred cccCChhhhCCCCCCEEEccCCccccccChhhcCCCCCCEEECcCC
Q 037951 406 SGEIPSTLGNLSSLYEIFLGDNNLSGVIPSSLGNLERLAILEMFAN 451 (627)
Q Consensus 406 ~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n 451 (627)
+..-..+|.+|++|+.+++.++.... ..+..+.+|+.+.+..+
T Consensus 346 ~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~ 388 (394)
T 4gt6_A 346 TKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPG 388 (394)
T ss_dssp CBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC--------
T ss_pred CEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCCC
Confidence 43444556666666666666654331 23455556666655443
|
| >4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} | Back alignment and structure |
|---|
Probab=99.36 E-value=1.5e-10 Score=118.11 Aligned_cols=336 Identities=10% Similarity=0.064 Sum_probs=182.2
Q ss_pred CcccCCccccCCC-CCCEEEccCccccccCCccccCCCCCCeeeCCCCC---CCCCCCCCCCCCCCCCEEECCCCCCCCC
Q 037951 109 LVGKIPANLSYCS-RLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPMNN---LTGGIPPFLGNLTSLEVVSLAGNPFGGN 184 (627)
Q Consensus 109 i~~~~~~~~~~l~-~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~---l~~~~~~~l~~l~~L~~L~L~~n~~~~~ 184 (627)
++.+-..+|.++. .|+.+.+..+ ++.+...+|.++.+|+.+.+..+. ++......|.++.+|+.+.+..+ +...
T Consensus 51 Vt~Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I 128 (394)
T 4gt6_A 51 VSKIGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEI 128 (394)
T ss_dssp EEEECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEE
T ss_pred eeEcCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-ccee
Confidence 3445566788884 6999999865 666778899999999999998764 55445677899999999888765 4435
Q ss_pred CCCccCCCCCccEEEeeCccccccCCccccCCCCCcEEEeecccCccCCChhhhhcCCCCceeccCCccccccCCccccC
Q 037951 185 IPDSLGQLKELKTLGIGGNNLSGSIPPSIYNLSFLVIFSVSENQMHGSLPPSLGLYFPNLKLFQTNENFFSGSIPISLSN 264 (627)
Q Consensus 185 ~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ 264 (627)
....|..+.+|+.+.+..+. ...-...+..+..|+.+.+..+ +. .+....+.
T Consensus 129 ~~~aF~~c~~L~~i~lp~~~-~~I~~~~F~~c~~L~~i~~~~~-~~-~I~~~aF~------------------------- 180 (394)
T 4gt6_A 129 DSEAFHHCEELDTVTIPEGV-TSVADGMFSYCYSLHTVTLPDS-VT-AIEERAFT------------------------- 180 (394)
T ss_dssp CTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCEEECCTT-CC-EECTTTTT-------------------------
T ss_pred hhhhhhhhccccccccccee-eeecccceecccccccccccce-ee-Eecccccc-------------------------
Confidence 56788999999999997543 3355567888889998887654 22 11111111
Q ss_pred CCCCcEeecccccccccCccCcCCCCCcCEEeccCccCCCCCCCCccccccCCCCCcccEEEccCcccccccchhHHhcc
Q 037951 265 ASKLEYVEIASNSFFGKLSVNFGGMKNLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLS 344 (627)
Q Consensus 265 ~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~ 344 (627)
...|+.+.+..+. .......|..+..++............... + +..........+.. + ..
T Consensus 181 ~~~l~~i~ip~~~-~~i~~~af~~c~~l~~~~~~~~~~~~~~~~---~---~~~~~~~~~~~~~~-------~----~~- 241 (394)
T 4gt6_A 181 GTALTQIHIPAKV-TRIGTNAFSECFALSTITSDSESYPAIDNV---L---YEKSANGDYALIRY-------P----SQ- 241 (394)
T ss_dssp TCCCSEEEECTTC-CEECTTTTTTCTTCCEEEECCSSSCBSSSC---E---EEECTTSCEEEEEC-------C----TT-
T ss_pred ccceeEEEECCcc-cccccchhhhccccceecccccccccccce---e---eccccccccccccc-------c----cc-
Confidence 2334444443321 122233355555555555444332221110 0 00000000000000 0 00
Q ss_pred ccccEEEeecccccccCcccccCCCCCCEEeCCCCccccccchhhcCCCCCcEeeccCCcccccCChhhhCCCCCCEEEc
Q 037951 345 SQLQILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFL 424 (627)
Q Consensus 345 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l 424 (627)
..+..+.+.. .+......+|.++..|+.+.+.++... ....+|..+++|+.+.+. +.++..-..+|.+|.+|+.+++
T Consensus 242 ~~~~~~~ip~-~v~~i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~l 318 (394)
T 4gt6_A 242 REDPAFKIPN-GVARIETHAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDI 318 (394)
T ss_dssp CCCSEEECCT-TEEEECTTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEEC
T ss_pred cccceEEcCC-cceEcccceeeecccccEEecccccce-ecCcccccccccccccCC-CcccccCceeecCCCCcCEEEe
Confidence 0122222211 112223345666666776666544332 444556667777777765 3344344456677777777777
Q ss_pred cCCccccccChhhcCCCCCCEEECcCCcCcccCCccccccccCccEEEccCCccccCCCccccCCCCCCEEEccCCcc
Q 037951 425 GDNNLSGVIPSSLGNLERLAILEMFANELSGTIPGDIFNISSLSVSLDLAENHFVGSIPPRIGNLKALRCFDVSNNDL 502 (627)
Q Consensus 425 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~ll~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l 502 (627)
.++ ++.....+|.+|.+|+.+.+..+ +...-...|.++.+| +.+++.++.... .++..+.+|+.+.+..+.+
T Consensus 319 p~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L-~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 319 PEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTAL-NNIEYSGSRSQW---NAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp CTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTC-CEEEESSCHHHH---HTCBCCCCC----------
T ss_pred CCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCC-CEEEECCceeeh---hhhhccCCCCEEEeCCCCE
Confidence 653 44455566777777777777543 331222345556666 677777665432 3455667777777766543
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.35 E-value=6.4e-12 Score=111.95 Aligned_cols=104 Identities=24% Similarity=0.251 Sum_probs=75.8
Q ss_pred CEEeCCCCcCcccCCccccCCCCCCEEEccCccccccCCccccCCCCCCeeeCCCCCCCCCCCCCCCCCCCCCEEECCCC
Q 037951 100 ETLLLSDNSLVGKIPANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTGGIPPFLGNLTSLEVVSLAGN 179 (627)
Q Consensus 100 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n 179 (627)
+.+++++|.++ .+|..+. ++|++|++++|++++..|..|.++++|++|++++|.+++..+..|.++++|++|++++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 67888888776 5666553 67888888888887666777777777888888887777655555677777777777777
Q ss_pred CCCCCCCCccCCCCCccEEEeeCcccc
Q 037951 180 PFGGNIPDSLGQLKELKTLGIGGNNLS 206 (627)
Q Consensus 180 ~~~~~~~~~l~~l~~L~~L~l~~n~~~ 206 (627)
.+.+..+..|..+++|++|++++|.+.
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcc
Confidence 777555555777777777777777665
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.28 E-value=2.5e-13 Score=136.62 Aligned_cols=44 Identities=18% Similarity=0.134 Sum_probs=21.2
Q ss_pred ccCCCCCCEEEccCCccccc----CCccccCCCCCCEEECCCCccccc
Q 037951 486 IGNLKALRCFDVSNNDLSGE----IPSELGLCSSLEEIYLAENFFNGF 529 (627)
Q Consensus 486 l~~l~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~L~~n~i~~~ 529 (627)
+...++|++|+|++|.+++. ++..+..+++|++|+|++|.|++.
T Consensus 207 L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~ 254 (372)
T 3un9_A 207 LDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSE 254 (372)
T ss_dssp GGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHH
T ss_pred HhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHH
Confidence 33444555555555555422 222333445555555555555443
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.25 E-value=1e-12 Score=132.26 Aligned_cols=160 Identities=17% Similarity=0.185 Sum_probs=101.1
Q ss_pred CCCCcEeeccCCcccccCChhhhC-----CCCCCEEEccCCccccccChhh-cCCCCCCEEECcCCcCcccCCcccc---
Q 037951 392 LLNLQGLDFGGNHFSGEIPSTLGN-----LSSLYEIFLGDNNLSGVIPSSL-GNLERLAILEMFANELSGTIPGDIF--- 462 (627)
Q Consensus 392 l~~L~~L~L~~n~~~~~~~~~~~~-----~~~L~~L~l~~n~~~~~~~~~l-~~l~~L~~L~l~~n~l~~~~~~~~~--- 462 (627)
++.|+.|++++|.++......+.. .++|++|++++|.++......+ ..+++|+.|++++|.+.......+.
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 467889999999987543333322 3688999999998865433333 2456788888888877643322221
Q ss_pred --ccccCccEEEccCCccccC----CCccccCCCCCCEEEccCCccccc----CCccccCCCCCCEEECCCCccccc---
Q 037951 463 --NISSLSVSLDLAENHFVGS----IPPRIGNLKALRCFDVSNNDLSGE----IPSELGLCSSLEEIYLAENFFNGF--- 529 (627)
Q Consensus 463 --~~~~ll~~L~l~~n~l~~~----~~~~l~~l~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~L~~n~i~~~--- 529 (627)
..+.+ ++|++++|.+... ++..+..+++|++|+|++|.+++. ++..+..+++|++|+|++|.|++.
T Consensus 151 ~~~~~~L-~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~ 229 (372)
T 3un9_A 151 LHDQCQI-TTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAAL 229 (372)
T ss_dssp HSTTCCC-CEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHH
T ss_pred HhcCCcc-ceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHH
Confidence 23445 6777777776532 223345667777777777776632 244556666777777777777653
Q ss_pred -CChhccCCCCCCEEECCCCcCcc
Q 037951 530 -IPSFFRTSRGIRKVDLSRNNFFG 552 (627)
Q Consensus 530 -~~~~l~~l~~L~~L~ls~n~l~~ 552 (627)
++..+..+++|++||+++|.+..
T Consensus 230 ~l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 230 ALARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp HHHHHHHHCSSCCEEECTTSSCCH
T ss_pred HHHHHHHhCCCCCEEeccCCCCCH
Confidence 33444456777777777777764
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=99.17 E-value=8.4e-11 Score=117.91 Aligned_cols=107 Identities=24% Similarity=0.255 Sum_probs=57.5
Q ss_pred CCcccceeecCCC-CcceecccccCCCCCCCEEECCC-CCCcccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCC
Q 037951 47 CEWEGITCDLRSK-ALSGLLSPQIGNLSFLREINLMN-NTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLT 124 (627)
Q Consensus 47 c~~~~~~c~l~~~-~l~~~~~~~l~~l~~L~~L~Ls~-~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~ 124 (627)
|.|..+.| +++ +++. +|. +..+++|++|+|++ |.+++..+..|.++++|++|+|++|++++..|..|.++++|+
T Consensus 8 C~~~~v~~--~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~ 83 (347)
T 2ifg_A 8 HGSSGLRC--TRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLS 83 (347)
T ss_dssp SSSSCEEC--CSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCC
T ss_pred ccCCEEEc--CCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCC
Confidence 66666544 444 4554 344 55566666666664 566554445566666666666666666555555555555555
Q ss_pred EEEccCccccccCCccccCCCCCCeeeCCCCCCC
Q 037951 125 VLVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLT 158 (627)
Q Consensus 125 ~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 158 (627)
+|+|++|++++..+..+..+. |++|++.+|.+.
T Consensus 84 ~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 84 RLNLSFNALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp EEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred EEeCCCCccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 555555555533333333332 444444444443
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=99.15 E-value=1.6e-10 Score=115.87 Aligned_cols=105 Identities=19% Similarity=0.193 Sum_probs=88.9
Q ss_pred CEEECCCC-CCcccCCcccCCCCCCCEEeCCC-CcCcccCCccccCCCCCCEEEccCccccccCCccccCCCCCCeeeCC
Q 037951 76 REINLMNN-TIQGEIPLEFGRLRRLETLLLSD-NSLVGKIPANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALP 153 (627)
Q Consensus 76 ~~L~Ls~~-~~~~~~~~~~~~l~~L~~L~L~~-n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~ 153 (627)
..++++++ +++ .+|. |..+++|++|+|++ |.+++..+..|.++++|++|+|++|++++..|..|.++++|++|+|+
T Consensus 11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 34688887 887 5777 99999999999996 99997777889999999999999999998888889999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCCCCC
Q 037951 154 MNNLTGGIPPFLGNLTSLEVVSLAGNPFGG 183 (627)
Q Consensus 154 ~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~ 183 (627)
+|.+++..+..+..++ |++|++.+|.+..
T Consensus 89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 89 FNALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp SSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred CCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 9999866555566555 8899998888874
|
| >4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=99.08 E-value=2e-08 Score=101.86 Aligned_cols=84 Identities=13% Similarity=0.034 Sum_probs=38.3
Q ss_pred cccCCCCCCEEeCCCCccccccchhhcCCCCCcEeeccCCcccccCChhhhCCCCCCEEEccCCccccccChhhcCCCCC
Q 037951 364 GIGNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLGDNNLSGVIPSSLGNLERL 443 (627)
Q Consensus 364 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L 443 (627)
++.++.+|+.+.+..+ +......+|.+|++|+.+.+.++.++..-..+|.+|.+|+.+++.++ ++.....+|.+|.+|
T Consensus 258 aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L 335 (379)
T 4h09_A 258 LLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKAL 335 (379)
T ss_dssp TTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTC
T ss_pred ccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCC
Confidence 3444444444444322 22222334445555555555544444333444555555555555432 333334445555555
Q ss_pred CEEECc
Q 037951 444 AILEMF 449 (627)
Q Consensus 444 ~~L~l~ 449 (627)
+.+.+.
T Consensus 336 ~~i~ip 341 (379)
T 4h09_A 336 STISYP 341 (379)
T ss_dssp CCCCCC
T ss_pred CEEEEC
Confidence 555443
|
| >4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=99.02 E-value=5e-08 Score=98.88 Aligned_cols=146 Identities=11% Similarity=0.059 Sum_probs=91.5
Q ss_pred CcCCCCCcCEEeccCccCCCCCCCCccccccCCCCCcccEEEccCcccccccchhHHhccccccEEEeecccccccCccc
Q 037951 285 NFGGMKNLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLSSQLQILVLGTNQLYGSIPSG 364 (627)
Q Consensus 285 ~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 364 (627)
.+.....++.+.+..+ +..+. ..++.++..|+.+.+..+ ++......+.... +++.+.+..+ +......+
T Consensus 212 ~f~~~~~l~~i~~~~~-~~~i~------~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~-~l~~i~l~~~-i~~i~~~a 281 (379)
T 4h09_A 212 GFSYGKNLKKITITSG-VTTLG------DGAFYGMKALDEIAIPKN-VTSIGSFLLQNCT-ALKTLNFYAK-VKTVPYLL 281 (379)
T ss_dssp TTTTCSSCSEEECCTT-CCEEC------TTTTTTCSSCCEEEECTT-CCEECTTTTTTCT-TCCEEEECCC-CSEECTTT
T ss_pred ccccccccceeeeccc-eeEEc------cccccCCccceEEEcCCC-ccEeCccccceee-hhcccccccc-ceeccccc
Confidence 3445556666655433 22111 124556666777776654 4434444454444 6777777543 33344556
Q ss_pred ccCCCCCCEEeCCCCccccccchhhcCCCCCcEeeccCCcccccCChhhhCCCCCCEEEccCCccccccChhhcCCCC
Q 037951 365 IGNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLGDNNLSGVIPSSLGNLER 442 (627)
Q Consensus 365 ~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~ 442 (627)
|.++++|+.+.+.++.++.....+|.+|.+|+.+++..+ ++..-..+|.+|.+|+.+.+..+ ++.....+|.++..
T Consensus 282 F~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~~ 357 (379)
T 4h09_A 282 CSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSSI 357 (379)
T ss_dssp TTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSSC
T ss_pred cccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCCC
Confidence 778888888888877777666677888888888888654 55455567888888888888654 55455666776643
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.97 E-value=8e-10 Score=110.05 Aligned_cols=164 Identities=11% Similarity=0.169 Sum_probs=97.5
Q ss_pred chhhcCCCCCcEeeccCCcccccCChhhhCCCCCCEEEccCCccccccChhhc--CCCCCCEEECcCC--cCcccCCccc
Q 037951 386 PKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLGDNNLSGVIPSSLG--NLERLAILEMFAN--ELSGTIPGDI 461 (627)
Q Consensus 386 ~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~--~l~~L~~L~l~~n--~l~~~~~~~~ 461 (627)
...+..+|+|+.|++++|.-. .++. + ..++|++|++..|.++......+. .+++|+.|+++.+ ...+. ..+
T Consensus 165 ~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~--~~~ 239 (362)
T 2ra8_A 165 SPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFD--GDM 239 (362)
T ss_dssp HHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCC--SCG
T ss_pred HHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccc--hhH
Confidence 344566677777777776311 2222 2 267777777777776544333333 5677777776432 11100 000
Q ss_pred cccccCccEEEccCCccccCCCccc--cCCCCCCEEEccCCcccccCCccc---cCCCCCCEEECCCCccccc----CCh
Q 037951 462 FNISSLSVSLDLAENHFVGSIPPRI--GNLKALRCFDVSNNDLSGEIPSEL---GLCSSLEEIYLAENFFNGF----IPS 532 (627)
Q Consensus 462 ~~~~~ll~~L~l~~n~l~~~~~~~l--~~l~~L~~L~Ls~n~l~~~~~~~l---~~l~~L~~L~L~~n~i~~~----~~~ 532 (627)
. .+ ...+ ..+++|++|++++|.+.+..+..+ ..+++|++|+|+.|.+++. ++.
T Consensus 240 ~---~l---------------~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~ 301 (362)
T 2ra8_A 240 N---VF---------------RPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLD 301 (362)
T ss_dssp G---GT---------------GGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHT
T ss_pred H---HH---------------HHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHh
Confidence 0 00 0111 346889999999998875443333 2578899999999988874 334
Q ss_pred hccCCCCCCEEECCCCcCccccchhcccCcCCeeeCcCCc
Q 037951 533 FFRTSRGIRKVDLSRNNFFGQIPIFLEALSLEYLNLSFND 572 (627)
Q Consensus 533 ~l~~l~~L~~L~ls~n~l~~~~p~~~~~~~L~~L~ls~n~ 572 (627)
.+..+++|+.|++++|.++...-..+...-...+++++++
T Consensus 302 ~L~~l~~L~~L~L~~n~i~d~~~~~l~~alg~~~~~~~~~ 341 (362)
T 2ra8_A 302 HVDKIKHLKFINMKYNYLSDEMKKELQKSLPMKIDVSDSQ 341 (362)
T ss_dssp THHHHTTCSEEECCSBBCCHHHHHHHHHHCCSEEECCSBC
T ss_pred hcccCCcceEEECCCCcCCHHHHHHHHHHcCCEEEecCCc
Confidence 4456789999999999887533333322113568888876
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.76 E-value=8.4e-09 Score=102.65 Aligned_cols=160 Identities=16% Similarity=0.171 Sum_probs=86.6
Q ss_pred ccccCCCCCCEEeCCCCccccccchhhcCCCCCcEeeccCCcccccCChhhh--CCCCCCEEEccC--Cccccc-----c
Q 037951 363 SGIGNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLG--NLSSLYEIFLGD--NNLSGV-----I 433 (627)
Q Consensus 363 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~--~~~~L~~L~l~~--n~~~~~-----~ 433 (627)
..+..+|+|+.|++++|.-. .++. + .+++|+.|++..|.+.......+. .+|+|++|+|+. +...+. +
T Consensus 166 ~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l 242 (362)
T 2ra8_A 166 PVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVF 242 (362)
T ss_dssp HHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGT
T ss_pred HHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHH
Confidence 34455667777777665211 1222 2 267777777777776544333333 577888887753 111111 0
Q ss_pred Chhh--cCCCCCCEEECcCCcCcccCCccccccccCccEEEccCCccccCCCccccCCCCCCEEEccCCccccc----CC
Q 037951 434 PSSL--GNLERLAILEMFANELSGTIPGDIFNISSLSVSLDLAENHFVGSIPPRIGNLKALRCFDVSNNDLSGE----IP 507 (627)
Q Consensus 434 ~~~l--~~l~~L~~L~l~~n~l~~~~~~~~~~~~~ll~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~----~~ 507 (627)
...+ ..+++|+.|++.+|.+.+..+..+.. ...+++|++|+|+.|.+++. ++
T Consensus 243 ~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~----------------------a~~~~~L~~LdLs~n~L~d~G~~~L~ 300 (362)
T 2ra8_A 243 RPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLE----------------------SDILPQLETMDISAGVLTDEGARLLL 300 (362)
T ss_dssp GGGSCTTTCTTCCEEEEESCTTHHHHHHHHHH----------------------CSSGGGCSEEECCSSCCBHHHHHHHH
T ss_pred HHHHhcCCCCCcCEEeCCCCCCchHHHHHHHh----------------------CccCCCCCEEECCCCCCChHHHHHHH
Confidence 0111 23566777777666654322111110 01346777777777777643 33
Q ss_pred ccccCCCCCCEEECCCCcccccCChhccC-CCCCCEEECCCCc
Q 037951 508 SELGLCSSLEEIYLAENFFNGFIPSFFRT-SRGIRKVDLSRNN 549 (627)
Q Consensus 508 ~~l~~l~~L~~L~L~~n~i~~~~~~~l~~-l~~L~~L~ls~n~ 549 (627)
..+..+++|+.|++++|.++......+.. + ...++++++.
T Consensus 301 ~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 301 DHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp TTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred hhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence 33455677888888877776554444432 2 3557777765
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=98.43 E-value=8.3e-08 Score=86.04 Aligned_cols=118 Identities=11% Similarity=0.157 Sum_probs=57.5
Q ss_pred hhhcCCCCCCEEECcCC-cCcccCCccccccccCccEEEccCCccccCCCccccCCCCCCEEEccCCccccc----CCcc
Q 037951 435 SSLGNLERLAILEMFAN-ELSGTIPGDIFNISSLSVSLDLAENHFVGSIPPRIGNLKALRCFDVSNNDLSGE----IPSE 509 (627)
Q Consensus 435 ~~l~~l~~L~~L~l~~n-~l~~~~~~~~~~~~~ll~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~----~~~~ 509 (627)
..+...+.|++|++++| .+.......+ ...+...++|++|+|++|.+... +...
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l---------------------~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~ 88 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPVPTLKAC---------------------AEALKTNTYVKKFSIVGTRSNDPVAFALAEM 88 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHHHHH---------------------HHHHTTCCSCCEEECTTSCCCHHHHHHHHHH
T ss_pred HHHhcCCCCCEEEecCCCCCCHHHHHHH---------------------HHHHHhCCCcCEEECcCCCCChHHHHHHHHH
Confidence 44566777888888777 6653211111 12233344555555555555422 2233
Q ss_pred ccCCCCCCEEECCCCccccc----CChhccCCCCCCEEEC--CCCcCccc----cchhcccCc-CCeeeCcCCcc
Q 037951 510 LGLCSSLEEIYLAENFFNGF----IPSFFRTSRGIRKVDL--SRNNFFGQ----IPIFLEALS-LEYLNLSFNDF 573 (627)
Q Consensus 510 l~~l~~L~~L~L~~n~i~~~----~~~~l~~l~~L~~L~l--s~n~l~~~----~p~~~~~~~-L~~L~ls~n~l 573 (627)
+...++|++|+|++|.|+.. +...+...++|++|++ ++|.+... +...+...+ |++|++++|.+
T Consensus 89 L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 89 LKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 34445555555555555433 2344444555555555 55555431 223333333 55555555554
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=98.36 E-value=1.1e-07 Score=85.15 Aligned_cols=62 Identities=19% Similarity=0.198 Sum_probs=32.3
Q ss_pred CCCCEEeCCCCccccc----cchhhcCCCCCcEeec--cCCccccc----CChhhhCCCCCCEEEccCCccc
Q 037951 369 VNLYSLQTEENQFTGS----IPKEMGKLLNLQGLDF--GGNHFSGE----IPSTLGNLSSLYEIFLGDNNLS 430 (627)
Q Consensus 369 ~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~L--~~n~~~~~----~~~~~~~~~~L~~L~l~~n~~~ 430 (627)
++|++|++++|.+... +...+...++|+.|++ ++|.+... +...+...++|++|++++|.+.
T Consensus 93 ~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 93 NTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp SSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred CCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 4455555555554422 2334445556666666 55665532 2233444566667777666654
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
Probab=98.19 E-value=3.9e-07 Score=85.78 Aligned_cols=67 Identities=18% Similarity=0.225 Sum_probs=39.5
Q ss_pred cCCCCCCEEEccCCcccc--cCCccccCCCCCCEEECCCCcccccCChhccCCC--CCCEEECCCCcCccccc
Q 037951 487 GNLKALRCFDVSNNDLSG--EIPSELGLCSSLEEIYLAENFFNGFIPSFFRTSR--GIRKVDLSRNNFFGQIP 555 (627)
Q Consensus 487 ~~l~~L~~L~Ls~n~l~~--~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~--~L~~L~ls~n~l~~~~p 555 (627)
.++++|+.|+|++|.+++ .+|..+..+++|+.|+|++|.+++. ..+..+. .|++|++++|++.+.+|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFR 237 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccC
Confidence 345667777777776664 3344555666777777777766654 1222222 66666666666665444
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
Probab=98.14 E-value=1e-06 Score=76.65 Aligned_cols=83 Identities=10% Similarity=0.080 Sum_probs=36.0
Q ss_pred cccEEEeecccccccCcccccCCCCCCEEeCCCCc-cccccchhhcCC----CCCcEeeccCCc-ccccCChhhhCCCCC
Q 037951 346 QLQILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQ-FTGSIPKEMGKL----LNLQGLDFGGNH-FSGEIPSTLGNLSSL 419 (627)
Q Consensus 346 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~l----~~L~~L~L~~n~-~~~~~~~~~~~~~~L 419 (627)
.|+.|++++|.++..--..+..+++|+.|++++|. +++..-..+..+ ++|+.|+|++|. +++.-...+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 45555555555544333334445555555555552 333222233322 234444444443 333222333344444
Q ss_pred CEEEccCCc
Q 037951 420 YEIFLGDNN 428 (627)
Q Consensus 420 ~~L~l~~n~ 428 (627)
++|++++|.
T Consensus 142 ~~L~L~~c~ 150 (176)
T 3e4g_A 142 KYLFLSDLP 150 (176)
T ss_dssp CEEEEESCT
T ss_pred CEEECCCCC
Confidence 444444443
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
Probab=98.10 E-value=2.5e-06 Score=80.20 Aligned_cols=102 Identities=22% Similarity=0.209 Sum_probs=69.9
Q ss_pred CCCCCE--EECCCCCCc---ccCCcccCCCCCCCEEeCCCCcCcc--cCCccccCCCCCCEEEccCccccccCCccccCC
Q 037951 72 LSFLRE--INLMNNTIQ---GEIPLEFGRLRRLETLLLSDNSLVG--KIPANLSYCSRLTVLVLGNNKLVGSIPFEFVSL 144 (627)
Q Consensus 72 l~~L~~--L~Ls~~~~~---~~~~~~~~~l~~L~~L~L~~n~i~~--~~~~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l 144 (627)
.+.|+. ++++.|... +.++....++++|+.|+|++|++++ .+|..+..+++|++|+|++|++.+. ..+..+
T Consensus 140 dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l 217 (267)
T 3rw6_A 140 DPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKI 217 (267)
T ss_dssp CHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGG
T ss_pred CcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhc
Confidence 344444 666777432 1122222567889999999999886 3456677889999999999988754 334444
Q ss_pred C--CCCeeeCCCCCCCCCCCC-------CCCCCCCCCEEE
Q 037951 145 Y--KLKQLALPMNNLTGGIPP-------FLGNLTSLEVVS 175 (627)
Q Consensus 145 ~--~L~~L~l~~n~l~~~~~~-------~l~~l~~L~~L~ 175 (627)
. +|++|++++|.+.+..|. .+..+++|+.||
T Consensus 218 ~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 218 KGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp TTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred ccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence 4 899999999988765542 356788888875
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
Probab=98.09 E-value=1e-06 Score=76.74 Aligned_cols=83 Identities=10% Similarity=-0.003 Sum_probs=54.3
Q ss_pred cEEEccCCccccCCCccccCCCCCCEEEccCCc-ccccCCccccCC----CCCCEEECCCCc-ccccCChhccCCCCCCE
Q 037951 469 VSLDLAENHFVGSIPPRIGNLKALRCFDVSNND-LSGEIPSELGLC----SSLEEIYLAENF-FNGFIPSFFRTSRGIRK 542 (627)
Q Consensus 469 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~-l~~~~~~~l~~l----~~L~~L~L~~n~-i~~~~~~~l~~l~~L~~ 542 (627)
+.||+++|.++...-..+..+++|++|+|++|. +++.--..++.+ ++|++|+|++|. ||+..-..+..+++|+.
T Consensus 64 ~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~ 143 (176)
T 3e4g_A 64 QAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNLKY 143 (176)
T ss_dssp EEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTCCE
T ss_pred eEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCCCE
Confidence 666777666655444556677788888888874 664433344443 467788887774 76665556667777888
Q ss_pred EECCCCcCc
Q 037951 543 VDLSRNNFF 551 (627)
Q Consensus 543 L~ls~n~l~ 551 (627)
|++++|+-.
T Consensus 144 L~L~~c~~I 152 (176)
T 3e4g_A 144 LFLSDLPGV 152 (176)
T ss_dssp EEEESCTTC
T ss_pred EECCCCCCC
Confidence 888877643
|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=97.46 E-value=6.9e-05 Score=66.44 Aligned_cols=63 Identities=16% Similarity=0.196 Sum_probs=33.0
Q ss_pred ccCCCCCCEEEccCCccccc----CCccccCCCCCCEEECCCCccccc----CChhccCCCCCCEEECCCC
Q 037951 486 IGNLKALRCFDVSNNDLSGE----IPSELGLCSSLEEIYLAENFFNGF----IPSFFRTSRGIRKVDLSRN 548 (627)
Q Consensus 486 l~~l~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~L~~n~i~~~----~~~~l~~l~~L~~L~ls~n 548 (627)
+..-+.|++|+|++|.+.+. +.+.+...+.|++|+|++|.|... +.+.+...+.|++|++++|
T Consensus 66 L~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 66 ACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred HhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCC
Confidence 33445556666666655522 233344555666666666666543 2334445555666666543
|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=97.28 E-value=7.9e-05 Score=66.07 Aligned_cols=45 Identities=9% Similarity=0.186 Sum_probs=20.6
Q ss_pred CCCcCEEeccCc-cCCCCCCCCccccccCCCCCcccEEEccCcccccc
Q 037951 289 MKNLSYLILEYN-NLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGA 335 (627)
Q Consensus 289 l~~L~~L~l~~n-~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~ 335 (627)
-+.|+.|+++++ .+...... .+..++...+.|+.|+|++|.+.+.
T Consensus 40 n~~L~~L~L~~nn~igd~ga~--~la~aL~~N~~L~~L~L~~n~igd~ 85 (197)
T 1pgv_A 40 DTDLKEVNINNMKRVSKERIR--SLIEAACNSKHIEKFSLANTAISDS 85 (197)
T ss_dssp CSSCCEEECTTCCSSCHHHHH--HHHHHHTTCSCCCEEECTTSCCBHH
T ss_pred CCCccEEECCCCCCCCHHHHH--HHHHHHhhCCCcCEEEccCCCCChH
Confidence 344555555543 44321111 2333444555566666666655543
|
| >3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* | Back alignment and structure |
|---|
Probab=96.71 E-value=0.0029 Score=52.23 Aligned_cols=56 Identities=18% Similarity=0.348 Sum_probs=38.6
Q ss_pred EEEccCCccc-ccCCccccCCCCCCEEECCCCcccccCChhccCCCCCCEEECCCCcCc
Q 037951 494 CFDVSNNDLS-GEIPSELGLCSSLEEIYLAENFFNGFIPSFFRTSRGIRKVDLSRNNFF 551 (627)
Q Consensus 494 ~L~Ls~n~l~-~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~ls~n~l~ 551 (627)
.++.+++.++ ..+|..+. ++|+.|+|++|.|+...+..|..+++|+.|+|++|++.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 5666777664 34554433 46777788888777766677777778888888887764
|
| >3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* | Back alignment and structure |
|---|
Probab=96.41 E-value=0.005 Score=50.82 Aligned_cols=36 Identities=28% Similarity=0.309 Sum_probs=19.2
Q ss_pred CCCEEeCCCCcCcccCCccccCCCCCCEEEccCccc
Q 037951 98 RLETLLLSDNSLVGKIPANLSYCSRLTVLVLGNNKL 133 (627)
Q Consensus 98 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ls~n~l 133 (627)
+|++|+|++|+|+...+..|..+++|++|+|++|.+
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 455555555555544444455555555555555544
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 627 | ||||
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 6e-24 | |
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 3e-15 | |
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 6e-15 | |
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 7e-15 | |
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 9e-13 | |
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 5e-12 | |
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 0.001 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 7e-20 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 6e-18 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 2e-16 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 2e-15 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 4e-12 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 2e-07 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 4e-18 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 4e-17 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 1e-15 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 2e-15 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 2e-13 | |
| d1ozna_ | 284 | c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept | 2e-14 | |
| d1ozna_ | 284 | c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept | 3e-13 | |
| d1ozna_ | 284 | c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept | 3e-13 | |
| d1ozna_ | 284 | c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept | 6e-12 | |
| d1ozna_ | 284 | c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept | 1e-09 | |
| d2astb2 | 284 | c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 | 3e-10 | |
| d2astb2 | 284 | c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 | 2e-05 | |
| d2astb2 | 284 | c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 | 7e-05 | |
| d2astb2 | 284 | c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 | 2e-04 | |
| d2astb2 | 284 | c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 | 2e-04 | |
| d2astb2 | 284 | c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 | 0.003 | |
| d1p9ag_ | 266 | c.10.2.7 (G:) von Willebrand factor binding domain | 1e-08 | |
| d1p9ag_ | 266 | c.10.2.7 (G:) von Willebrand factor binding domain | 4e-07 | |
| d1p9ag_ | 266 | c.10.2.7 (G:) von Willebrand factor binding domain | 4e-07 | |
| d1p9ag_ | 266 | c.10.2.7 (G:) von Willebrand factor binding domain | 2e-05 | |
| d1p9ag_ | 266 | c.10.2.7 (G:) von Willebrand factor binding domain | 2e-05 | |
| d1p9ag_ | 266 | c.10.2.7 (G:) von Willebrand factor binding domain | 7e-05 | |
| d1w8aa_ | 192 | c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga | 2e-08 | |
| d1w8aa_ | 192 | c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga | 1e-04 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 1e-06 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 2e-06 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 8e-06 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 1e-05 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 3e-05 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 1e-04 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 6e-04 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 3e-06 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 6e-06 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 8e-05 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 9e-05 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 1e-04 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 2e-04 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 4e-04 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 5e-04 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 6e-04 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 6e-04 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 7e-04 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 0.002 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 0.003 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 0.004 | |
| d1a9na_ | 162 | c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom | 3e-06 | |
| d1a9na_ | 162 | c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom | 0.003 | |
| d1dcea3 | 124 | c.10.2.2 (A:444-567) Rab geranylgeranyltransferase | 4e-05 | |
| d1dcea3 | 124 | c.10.2.2 (A:444-567) Rab geranylgeranyltransferase | 9e-05 | |
| d1dcea3 | 124 | c.10.2.2 (A:444-567) Rab geranylgeranyltransferase | 4e-04 | |
| d1dcea3 | 124 | c.10.2.2 (A:444-567) Rab geranylgeranyltransferase | 5e-04 | |
| d1dcea3 | 124 | c.10.2.2 (A:444-567) Rab geranylgeranyltransferase | 0.001 | |
| d2ca6a1 | 344 | c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom | 6e-05 | |
| d2ca6a1 | 344 | c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom | 8e-05 | |
| d2ca6a1 | 344 | c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom | 0.003 | |
| d1h6ua2 | 227 | c.10.2.1 (A:36-262) Internalin H {Listeria monocyt | 0.001 | |
| d1h6ua2 | 227 | c.10.2.1 (A:36-262) Internalin H {Listeria monocyt | 0.002 | |
| d1h6ua2 | 227 | c.10.2.1 (A:36-262) Internalin H {Listeria monocyt | 0.002 | |
| d1h6ua2 | 227 | c.10.2.1 (A:36-262) Internalin H {Listeria monocyt | 0.003 | |
| d1h6ua2 | 227 | c.10.2.1 (A:36-262) Internalin H {Listeria monocyt | 0.003 | |
| d1h6ua2 | 227 | c.10.2.1 (A:36-262) Internalin H {Listeria monocyt | 0.004 | |
| d1xwdc1 | 242 | c.10.2.7 (C:18-259) Follicle-stimulating hormone r | 0.003 | |
| d1xwdc1 | 242 | c.10.2.7 (C:18-259) Follicle-stimulating hormone r | 0.003 |
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 100 bits (249), Expect = 6e-24
Identities = 70/327 (21%), Positives = 119/327 (36%), Gaps = 28/327 (8%)
Query: 16 EGDLAALQAFKSMISHDPQGILNSWNDSRHFCE--WEGITCDLRSKALSGLLSPQIGNLS 73
D AL K + + L+SW + C W G+ CD ++
Sbjct: 5 PQDKQALLQIKKDLGNPTT--LSSWLPTTDCCNRTWLGVLCDTDTQTYR----------- 51
Query: 74 FLREINLMNNTIQG--EIPLEFGRLRRLETLLLSDN-SLVGKIPANLSYCSRLTVLVLGN 130
+ ++L + IP L L L + +LVG IP ++ ++L L + +
Sbjct: 52 -VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITH 110
Query: 131 NKLVGSIPFEFVSLYKLKQLALPMNNLTGGIPPFLGNLTSLEVVSLAGNPFGGNIPDSLG 190
+ G+IP + L L N L+G +PP + +L +L ++ GN G IPDS G
Sbjct: 111 TNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYG 170
Query: 191 QLKELKTLGIGGNNLSGSIPPSIYNLSFLVIFSVSENQMHGSLPPSLGLYFPNLKLFQTN 250
+L T N P + L +S N + G G K+
Sbjct: 171 SFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAK 230
Query: 251 ENFFSGSIPISLSNASKLEYVEIASNSFFGKLSVNFGGMKNLSYLILEYNNLGSGESDEM 310
+ + + L +++ +N +G L +K L L + +NNL
Sbjct: 231 NSLAFDLGKV--GLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNL-------C 281
Query: 311 GFMNSLANCSKLQVLSLGGNQFRGALP 337
G + N + V + N+ P
Sbjct: 282 GEIPQGGNLQRFDVSAYANNKCLCGSP 308
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 74.8 bits (182), Expect = 3e-15
Identities = 67/270 (24%), Positives = 98/270 (36%), Gaps = 10/270 (3%)
Query: 344 SSQLQILVLGTNQLYG--SIPSGIGNLVNLYSLQTEEN-QFTGSIPKEMGKLLNLQGLDF 400
+ ++ L L L IPS + NL L L G IP + KL L L
Sbjct: 49 TYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYI 108
Query: 401 GGNHFSGEIPSTLGNLSSLYEIFLGDNNLSGVIPSSLGNLERLAILEMFANELSGTIPGD 460
+ SG IP L + +L + N LSG +P S+ +L L + N +SG IP
Sbjct: 109 THTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDS 168
Query: 461 IFNISSLSVSLDLAENHFVGSIPPRIGNLKALRCFDVSNNDLSGEIPSELGLCSSLEEIY 520
+ S L S+ ++ N F + ++ S L +
Sbjct: 169 YGSFSKLFTSMTISRNRLT--GKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKI 226
Query: 521 LAENFFNGFIPSFFRTSRGIRKVDLSRNNFFGQIPIFLEAL-SLEYLNLSFNDFEGRLPT 579
F S+ + +DL N +G +P L L L LN+SFN+ G +P
Sbjct: 227 HLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286
Query: 580 RGIFANASAISVGGCNRLCGGIHELQLPKC 609
G + LCG LP C
Sbjct: 287 GGNLQRFDVSAYANNKCLCGS----PLPAC 312
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 74.0 bits (180), Expect = 6e-15
Identities = 61/274 (22%), Positives = 94/274 (34%), Gaps = 11/274 (4%)
Query: 187 DSLGQLKELKTLGIGGNNLSG--SIPPSIYNLSFLVIFSVSENQMHGSLPPSLGLYFPNL 244
D+ Q + L + G NL IP S+ NL +L + P L
Sbjct: 44 DTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQL 103
Query: 245 KLFQTNENFFSGSIPISLSNASKLEYVEIASNSFFGKLSVNFGGMKNLSYLILEYNNLGS 304
SG+IP LS L ++ + N+ G L + + NL + + N +
Sbjct: 104 HYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISG 163
Query: 305 GESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLSSQLQILVLGTNQLYGSIPSG 364
D G + L + N+ G +P + AN V + + S
Sbjct: 164 AIPDSYGSFSKLFTSMTIS-----RNRLTGKIPPTFAN---LNLAFVDLSRNMLEGDASV 215
Query: 365 IGNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFL 424
+ ++G NL GLD N G +P L L L+ + +
Sbjct: 216 LFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNV 275
Query: 425 GDNNLSGVIPSSLGNLERLAILEMFANELSGTIP 458
NNL G IP GNL+R + N+ P
Sbjct: 276 SFNNLCGEIP-QGGNLQRFDVSAYANNKCLCGSP 308
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 73.6 bits (179), Expect = 7e-15
Identities = 60/267 (22%), Positives = 97/267 (36%), Gaps = 13/267 (4%)
Query: 166 GNLTSLEVVSLAGNPFGGN--IPDSLGQLKELKTLGIGGN-NLSGSIPPSIYNLSFLVIF 222
+ + L+G IP SL L L L IGG NL G IPP+I L+ L
Sbjct: 47 TQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYL 106
Query: 223 SVSENQMHGSLPPSLGLYFPNLKLFQTNENFFSGSIPISLSNASKLEYVEIASNSFFGKL 282
++ + G+ P L + N SG++P S+S+ L + N G +
Sbjct: 107 YITHTNVSGA-IPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAI 165
Query: 283 SVNFGGMKNLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIAN 342
++G L + N +G+ +LA ++ S+
Sbjct: 166 PDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDL--------SRNMLEGDASVLF 217
Query: 343 LSSQLQILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGG 402
S + + +G NL L N+ G++P+ + +L L L+
Sbjct: 218 GSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSF 277
Query: 403 NHFSGEIPSTLGNLSSLYEIFLGDNNL 429
N+ GEIP GNL +N
Sbjct: 278 NNLCGEIPQ-GGNLQRFDVSAYANNKC 303
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 67.5 bits (163), Expect = 9e-13
Identities = 66/264 (25%), Positives = 101/264 (38%), Gaps = 27/264 (10%)
Query: 285 NFGGMKNLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLS 344
++ L L NL +SLAN L L +GG
Sbjct: 45 TDTQTYRVNNLDLSGLNL----PKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKL 100
Query: 345 SQLQILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNH 404
+QL L + + G+IP + + L +L N +G++P + L NL G+ F GN
Sbjct: 101 TQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNR 160
Query: 405 FSGEIPSTLGNLSSLYE-IFLGDNNLSGVIPSSLGNLERLAIL----------------- 446
SG IP + G+ S L+ + + N L+G IP + NL +
Sbjct: 161 ISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSD 220
Query: 447 ----EMFANELSGTIPGDIFNISSLSVSLDLAENHFVGSIPPRIGNLKALRCFDVSNNDL 502
++ + S +S LDL N G++P + LK L +VS N+L
Sbjct: 221 KNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNL 280
Query: 503 SGEIPSELGLCSSLEEIYLAENFF 526
GEIP + G + A N
Sbjct: 281 CGEIP-QGGNLQRFDVSAYANNKC 303
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 64.8 bits (156), Expect = 5e-12
Identities = 58/267 (21%), Positives = 95/267 (35%), Gaps = 25/267 (9%)
Query: 314 NSLANCSKLQVLSLGGNQFRGA--LPHSIANLSSQLQILVLGTNQLYGSIPSGIGNLVNL 371
++ ++ L L G +P S+ANL + + G N L G IP I L L
Sbjct: 44 DTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQL 103
Query: 372 YSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLGDNNLSG 431
+ L +G+IP + ++ L LDF N SG +P ++ +L +L I N +SG
Sbjct: 104 HYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISG 163
Query: 432 VIPSSLGNLERLAILEMFAN----------------------ELSGTIPGDIFNISSLSV 469
IP S G+ +L + + S +
Sbjct: 164 AIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNT 223
Query: 470 SLDLAENHFVGSIPPRIGNLKALRCFDVSNNDLSGEIPSELGLCSSLEEIYLAENFFNGF 529
+ + ++G K L D+ NN + G +P L L + ++ N G
Sbjct: 224 QKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGE 283
Query: 530 IPSFFRTSRGIRKVDLSRNNFFGQIPI 556
IP R + N P+
Sbjct: 284 IPQGGNLQR-FDVSAYANNKCLCGSPL 309
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 39.0 bits (89), Expect = 0.001
Identities = 31/127 (24%), Positives = 53/127 (41%), Gaps = 2/127 (1%)
Query: 431 GVIPSSLGNLERLAILEMFANELSG--TIPGDIFNISSLSVSLDLAENHFVGSIPPRIGN 488
GV+ + R+ L++ L IP + N+ L+ N+ VG IPP I
Sbjct: 40 GVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAK 99
Query: 489 LKALRCFDVSNNDLSGEIPSELGLCSSLEEIYLAENFFNGFIPSFFRTSRGIRKVDLSRN 548
L L +++ ++SG IP L +L + + N +G +P + + + N
Sbjct: 100 LTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGN 159
Query: 549 NFFGQIP 555
G IP
Sbjct: 160 RISGAIP 166
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 89.7 bits (221), Expect = 7e-20
Identities = 83/392 (21%), Positives = 147/392 (37%), Gaps = 30/392 (7%)
Query: 139 FEFVSLYKLKQLALPMNNLTGGIPPFLGNLTSLEVVSLAGNPFGGNIPDSLGQLKELKTL 198
F +L + + L N+T + +L + + G D + L L +
Sbjct: 16 FTDTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRL--GIKSIDGVEYLNNLTQI 71
Query: 199 GIGGNNLSGSIPPSIYNLSFLVIFSVSENQMHGSLPPSL-----GLYFPNLKLFQTNENF 253
N L+ P + NL+ LV ++ NQ+ P + GL N ++ +
Sbjct: 72 NFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLK 129
Query: 254 FSGSIPISLSNASKLEYVEIASNSFFGKLSVNFGGMKNLSYL-ILEYNNLGSGESDEMGF 312
++ +++ + + S + + +L L L S+++
Sbjct: 130 NLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSD 189
Query: 313 MNSLANCSKLQVLSLGGNQFRGALPHSIANLSSQLQILVLGTNQLYGSIPSGIGNLVNLY 372
++ LA + L+ L NQ P I + L L L NQL + +L NL
Sbjct: 190 ISVLAKLTNLESLIATNNQISDITPLGI---LTNLDELSLNGNQLKD--IGTLASLTNLT 244
Query: 373 SLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLGDNNLSGV 432
L NQ + P + L L L G N S P L L++L + L +N L +
Sbjct: 245 DLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDI 300
Query: 433 IPSSLGNLERLAILEMFANELSGTIPGDIFNISSLSVSLDLAENHFVGSIPPRIGNLKAL 492
P S NL+ L L ++ N +S P + +++ L L A N S + NL +
Sbjct: 301 SPIS--NLKNLTYLTLYFNNISDISP--VSSLTKLQR-LFFANNKV--SDVSSLANLTNI 353
Query: 493 RCFDVSNNDLSGEIPSELGLCSSLEEIYLAEN 524
+N +S P L + + ++ L +
Sbjct: 354 NWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 83.9 bits (206), Expect = 6e-18
Identities = 72/400 (18%), Positives = 134/400 (33%), Gaps = 33/400 (8%)
Query: 179 NPFGGNIPDSLGQLKELKTLGIGGNNLSGSIPPSIYNLSFLVIFSVSENQMHGSLPPSLG 238
P D+ L E +G N++ ++ + +L + + S+ G
Sbjct: 10 TPINQIFTDT--ALAEKMKTVLGKTNVTDTVSQT--DLDQVTTLQADRLGIK-SID---G 61
Query: 239 L-YFPNLKLFQTNENFFSGSIPISLSNASKLEYVEIASNSFFGKLSVNFGGMKNLSYLIL 297
+ Y NL + N + P L N +KL + + +N + L
Sbjct: 62 VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFN 119
Query: 298 EYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLSSQLQILVLGTNQL 357
+ + + + +S ++ + L T +
Sbjct: 120 NQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLER 179
Query: 358 YGSIPSGI------GNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIPS 411
+ + L NL SL NQ + P + NL L GN
Sbjct: 180 LDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILT--NLDELSLNGNQLKD--IG 235
Query: 412 TLGNLSSLYEIFLGDNNLSGVIPSSLGNLERLAILEMFANELSGTIPGDIFNISSLSVSL 471
TL +L++L ++ L +N +S + P L L +L L++ AN++S P ++ L+
Sbjct: 236 TLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP-----LAGLTALT 288
Query: 472 DLAENHFVGSIPPRIGNLKALRCFDVSNNDLSGEIPSELGLCSSLEEIYLAENFFNGFIP 531
+L N I NLK L + N++S P + + L+ ++ A N +
Sbjct: 289 NLELNENQLEDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD--V 344
Query: 532 SFFRTSRGIRKVDLSRNNFFGQIPIFLEALSLEYLNLSFN 571
S I + N P+ + L L+
Sbjct: 345 SSLANLTNINWLSAGHNQISDLTPLA-NLTRITQLGLNDQ 383
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 79.3 bits (194), Expect = 2e-16
Identities = 87/406 (21%), Positives = 143/406 (35%), Gaps = 42/406 (10%)
Query: 71 NLSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLTVLVLGN 130
L+ + L + + L ++ TL + K + Y + LT + N
Sbjct: 20 ALAEKMKTVLGKTNVTDTVSQT--DLDQVTTLQADRLGI--KSIDGVEYLNNLTQINFSN 75
Query: 131 NKLVGSIPFEFVSLYKLKQLALPMNNLTGGIPPFLGNLTSLEVVSLAGNPFGGNIPDSLG 190
N+L P + +L KL + + N + P + + D L
Sbjct: 76 NQLTDITPLK--NLTKLVDILMNNNQIADITPLANLTNLTGLTL----FNNQITDIDPLK 129
Query: 191 QLKELKTLGIGGNNLSGSIPPSIYNLSFLVIFSVSENQMHGSLPPSLGLYFPNLKLFQTN 250
L L L + N + I LS L + L +L ++
Sbjct: 130 NLTNLNRLELSSNTI-----SDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISS 184
Query: 251 ENFFSGSIPISLSNASKLEYVEIASNSFFGKLSVNFGGMKNLSYLILEYNNLGSGESDEM 310
S+ L+N L +N + + NL L L N L
Sbjct: 185 NKVSDISVLAKLTNLESLIA---TNNQISDITPLGI--LTNLDELSLNGNQLKD------ 233
Query: 311 GFMNSLANCSKLQVLSLGGNQFRGALPHSIANLSSQLQILVLGTNQLYGSIPSGIGNLVN 370
+ +LA+ + L L L NQ P S ++L L LG NQ+ P + L
Sbjct: 234 --IGTLASLTNLTDLDLANNQISNLAPLSGL---TKLTELKLGANQISNISP--LAGLTA 286
Query: 371 LYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLGDNNLS 430
L +L+ ENQ + L NL L N+ S P + +L+ L +F +N +S
Sbjct: 287 LTNLELNENQLE--DISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVS 342
Query: 431 GVIPSSLGNLERLAILEMFANELSGTIPGDIFNISSLSVSLDLAEN 476
SSL NL + L N++S P + N++ ++ L L +
Sbjct: 343 D--VSSLANLTNINWLSAGHNQISDLTP--LANLTRIT-QLGLNDQ 383
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 76.2 bits (186), Expect = 2e-15
Identities = 44/208 (21%), Positives = 77/208 (37%), Gaps = 32/208 (15%)
Query: 40 WNDSRHFCEWEGITCDLRSKALSGLLSPQIGNLSFLREINLMNNTIQGEIPLEFGRLRRL 99
+ S + + +S + I + L E++L N ++ L L
Sbjct: 188 SDISVLAKLTNLESLIATNNQISDITPLGIL--TNLDELSLNGNQLKD--IGTLASLTNL 243
Query: 100 ETLLLSDNSLVGKIPANLSYCSRLTVLVLGNNKLVGSIPFEFVS---------------- 143
L L++N + P LS ++LT L LG N++ P ++
Sbjct: 244 TDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDIS 301
Query: 144 ----LYKLKQLALPMNNLTGGIPPFLGNLTSLEVVSLAGNPFGGNIPDSLGQLKELKTLG 199
L L L L NN++ P + +LT L+ + A N SL L + L
Sbjct: 302 PISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLS 357
Query: 200 IGGNNLSGSIPPSIYNLSFLVIFSVSEN 227
G N +S P + NL+ + +++
Sbjct: 358 AGHNQISDLTP--LANLTRITQLGLNDQ 383
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 65.8 bits (159), Expect = 4e-12
Identities = 65/350 (18%), Positives = 116/350 (33%), Gaps = 43/350 (12%)
Query: 69 IGNLSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLTVLVL 128
+ L+ L +IN NN + P L +L +L+++N + P L
Sbjct: 62 VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFN 119
Query: 129 GNNKLVGSIPFEFVSLYKLKQL---------------ALPMNNLTGGIPPFLGNLTSLEV 173
+ + L NLT+LE
Sbjct: 120 NQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLER 179
Query: 174 VSLAGNPFGGNIPDSLGQLKELKTLGIGGNNLSGSIPPSIYNLSFLVIFSVSENQMHGSL 233
+ ++ N + +L L++L N +S P I + L S++ NQ+
Sbjct: 180 LDISSNKVSDISVLA--KLTNLESLIATNNQISDITPLGIL--TNLDELSLNGNQLKD-- 233
Query: 234 PPSLGLYFPNLKLFQTNENFFSGSIPISLSNASKLEYVEIASNSFFGKLSVNFGGMKNLS 293
+L NL N S P LS +KL +++ +N +
Sbjct: 234 IGTLA-SLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAG------- 283
Query: 294 YLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLSSQLQILVLG 353
L +++ ++ ++N L L+L N P +++L+ LQ L
Sbjct: 284 ---LTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP--VSSLTK-LQRLFFA 337
Query: 354 TNQLYGSIPSGIGNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGN 403
N++ S S + NL N+ L NQ + P + L + L
Sbjct: 338 NNKV--SDVSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 51.2 bits (121), Expect = 2e-07
Identities = 52/321 (16%), Positives = 97/321 (30%), Gaps = 54/321 (16%)
Query: 289 MKNLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLSSQLQ 348
+ ++ L + + S ++ + + L ++ NQ P + NL+ +
Sbjct: 43 LDQVTTLQADRLGIKS--------IDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVD 92
Query: 349 ILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGG------ 402
IL+ + + + NL L + L L
Sbjct: 93 ILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSG 152
Query: 403 --------NHFSGEIPSTLGNLSSLYEIFLGDNNLSGVIPSSLGNLERLAILEMFANELS 454
L NL++L + + N +S + + L L L N++S
Sbjct: 153 LTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLA--KLTNLESLIATNNQIS 210
Query: 455 GTIPGDIFNISSLSVSLDLAENHFVGSIPPRIGNLKALRCFDVSNNDLSGEIPSELGLCS 514
P + +++L L L N + +L L D++NN +S P L +
Sbjct: 211 DITP--LGILTNLDE-LSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLT 263
Query: 515 SLEEIYLAENFFNGFIPSFFRTSRGI--------------------RKVDLSRNNFFGQI 554
L E+ L N + P T+ + L NN
Sbjct: 264 KLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDIS 323
Query: 555 PIFLEALSLEYLNLSFNDFEG 575
P+ L+ L + N
Sbjct: 324 PVS-SLTKLQRLFFANNKVSD 343
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 83.2 bits (204), Expect = 4e-18
Identities = 52/279 (18%), Positives = 91/279 (32%), Gaps = 30/279 (10%)
Query: 55 DLRSKALSGLLSPQIGNLSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIP 114
DL++ ++ + NL L + L+NN I P F L +LE L LS N L
Sbjct: 37 DLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPE 96
Query: 115 ANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTGGIPPFLGNLTSLEVV 174
L V K+ S+ F ++ + +L +G + L +
Sbjct: 97 KMPKTLQELRVHENEITKVRKSV-FNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYI 155
Query: 175 SLAGNPFGGNIPDSLGQLKELKTLGIGGNNLSGSIPPSIYNLSFLVIFSVSENQMHGSLP 234
+A IP L L L + GN ++ S+ L+ L +S N +
Sbjct: 156 RIADTNI-TTIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISA--- 209
Query: 235 PSLGLYFPNLKLFQTNENFFSGSIPISLSNASKLEYVEIASNSFFGKLSVNFGGMKNLSY 294
G L + + +N+ K+ K +
Sbjct: 210 VDNGSLANTPHLRELHL-----------------------NNNKLVKVPGGLADHKYIQV 246
Query: 295 LILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFR 333
+ L NN+ + S++ + +SL N +
Sbjct: 247 VYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 285
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 80.1 bits (196), Expect = 4e-17
Identities = 50/257 (19%), Positives = 84/257 (32%), Gaps = 14/257 (5%)
Query: 322 LQVLSLGGNQFRGALPHSIANLSSQLQILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQF 381
+L L N+ NL L L+L N++ P LV L L +NQ
Sbjct: 33 TALLDLQNNKITEIKDGDFKNLK-NLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL 91
Query: 382 TGSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLGDNNLSGVIPSSLGNLE 441
K L L+ + + + L + + + SG+ + ++
Sbjct: 92 KELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVE-LGTNPLKSSGIENGAFQGMK 150
Query: 442 RLAILEMFANELSGTIPGDIFNISSLSVSLDLAENHFVGSIPPRIGNLKALRCFDVSNND 501
+L+ + + ++ TIP + SL+ L L N + L L +S N
Sbjct: 151 KLSYIRIADTNIT-TIPQGLP--PSLT-ELHLDGNKITKVDAASLKGLNNLAKLGLSFNS 206
Query: 502 LSGEIPSELGLCSSLEEIYLAENFFNGFIPSFFRTSRGIRKVDLSRNNF-------FGQI 554
+S L L E++L N I+ V L NN F
Sbjct: 207 ISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKY-IQVVYLHNNNISAIGSNDFCPP 265
Query: 555 PIFLEALSLEYLNLSFN 571
+ S ++L N
Sbjct: 266 GYNTKKASYSGVSLFSN 282
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 75.5 bits (184), Expect = 1e-15
Identities = 36/194 (18%), Positives = 68/194 (35%), Gaps = 7/194 (3%)
Query: 360 SIPSGIGNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSL 419
+P + + L + N+ T + L NL L N S P L L
Sbjct: 24 KVPKDLPP--DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKL 81
Query: 420 YEIFLGDNNLSGVIPSSLGNLERLAILEMFANELSGTIPGDIFNISSLSVSLDLAENHFV 479
++L N L + L+ L + E ++ ++ + + + L
Sbjct: 82 ERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVV--ELGTNPLKSS 139
Query: 480 GSIPPRIGNLKALRCFDVSNNDLSGEIPSELGLCSSLEEIYLAENFFNGFIPSFFRTSRG 539
G +K L +++ +++ IP GL SL E++L N + +
Sbjct: 140 GIENGAFQGMKKLSYIRIADTNIT-TIPQ--GLPPSLTELHLDGNKITKVDAASLKGLNN 196
Query: 540 IRKVDLSRNNFFGQ 553
+ K+ LS N+
Sbjct: 197 LAKLGLSFNSISAV 210
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 75.5 bits (184), Expect = 2e-15
Identities = 39/235 (16%), Positives = 81/235 (34%), Gaps = 5/235 (2%)
Query: 341 ANLSSQLQILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDF 400
+L +L L N++ NL NL++L N+ + P L+ L+ L
Sbjct: 27 KDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 86
Query: 401 GGNHFSGEIPSTLGNLSSLYEIFLGDNNLSGVIPSSLGNLERLAILEMFANELSGTIPGD 460
N L L + + + L + + L + SG G
Sbjct: 87 SKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVV-ELGTNPLKSSGIENGA 145
Query: 461 IFNISSLSVSLDLAENHFVGSIPPRIGNLKALRCFDVSNNDLSGEIPSELGLCSSLEEIY 520
+ LS +A+ + +IP G +L + N ++ + L ++L ++
Sbjct: 146 FQGMKKLSYI-RIADTNI-TTIPQ--GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLG 201
Query: 521 LAENFFNGFIPSFFRTSRGIRKVDLSRNNFFGQIPIFLEALSLEYLNLSFNDFEG 575
L+ N + + +R++ L+ N + ++ + L N+
Sbjct: 202 LSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISA 256
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 68.9 bits (167), Expect = 2e-13
Identities = 52/284 (18%), Positives = 91/284 (32%), Gaps = 37/284 (13%)
Query: 99 LETLLLSDNSLVGKIPANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLT 158
L + SD L K+P +L +L L NNK+ +F +L L L L N ++
Sbjct: 12 LRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS 68
Query: 159 GGIPPFLGNLTSLEVVSLAGNPFGGNIPDSLGQLKELKTLGIGGNNL------------- 205
P L LE + L+ N L+EL+ +
Sbjct: 69 KISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIV 128
Query: 206 ----------SGSIPPSIYNLSFLVIFSVSENQMHGSLPPSLGLYFPNLKLFQTNENFFS 255
SG + + L +++ + ++P L P+L + N +
Sbjct: 129 VELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGL---PPSLTELHLDGNKIT 184
Query: 256 GSIPISLSNASKLEYVEIASNSFFGKLSVNFGGMKNLSYLILEYNNLGSGESDEMGFMNS 315
SL + L + ++ NS + + +L L L N L +
Sbjct: 185 KVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL-------VKVPGG 237
Query: 316 LANCSKLQVLSLGGNQFRGALPHSIANLSSQLQILVLGTNQLYG 359
LA+ +QV+ L N + + L+
Sbjct: 238 LADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFS 281
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 72.2 bits (175), Expect = 2e-14
Identities = 49/251 (19%), Positives = 83/251 (33%), Gaps = 11/251 (4%)
Query: 6 ITLLQVAAFEEGDLAALQAFKSMISHDPQGILNSWNDSRHFCEWEGITCDLRSKALSGLL 65
I+ + A+F L + + ++ + + L +
Sbjct: 44 ISHVPAASF--RACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ----LRSVD 97
Query: 66 SPQIGNLSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLTV 125
L L ++L +Q P F L L+ L L DN+L LT
Sbjct: 98 PATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTH 157
Query: 126 LVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTGGIPPFLGNLTSLEVVSLAGNPFGGNI 185
L L N++ F L+ L +L L N + P +L L + L N
Sbjct: 158 LFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALP 217
Query: 186 PDSLGQLKELKTLGIGGNNLSGSIPPSIYNLSFLVIFSVSENQMHGSLPPSLGLYFPNLK 245
++L L+ L+ L + N + ++L F S +++ SLP L
Sbjct: 218 TEALAPLRALQYLRLNDNPWVCDC-RARPLWAWLQKFRGSSSEVPCSLPQRLA----GRD 272
Query: 246 LFQTNENFFSG 256
L + N G
Sbjct: 273 LKRLAANDLQG 283
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 68.3 bits (165), Expect = 3e-13
Identities = 52/273 (19%), Positives = 84/273 (30%), Gaps = 14/273 (5%)
Query: 232 SLPPSLGLYFPNLKLFQTNENFFSGSIPISLSNASKLEYVEIASNSFFGKLSVNFGGMKN 291
++P + + + N S S L + + SN + F G+
Sbjct: 25 AVPVGI---PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLAL 81
Query: 292 LSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLSSQLQILV 351
L L L N +L L L L + + LQ L
Sbjct: 82 LEQLDLSDNAQLRSVDPAT-----FHGLGRLHTLHLD-RCGLQELGPGLFRGLAALQYLY 135
Query: 352 LGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIPS 411
L N L +L NL L N+ + + L +L L N + P
Sbjct: 136 LQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPH 195
Query: 412 TLGNLSSLYEIFLGDNNLSGVIPSSLGNLERLAILEMFANELSGTIPGDIFNISSLSVSL 471
+L L ++L NNLS + +L L L L + N + +
Sbjct: 196 AFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDC--RARPLWAWLQKF 253
Query: 472 DLAENHFVGSIPPRIGNLKALRCFDVSNNDLSG 504
+ + S+P R+ ++ NDL G
Sbjct: 254 RGSSSEVPCSLPQRLAGRDLK---RLAANDLQG 283
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 68.3 bits (165), Expect = 3e-13
Identities = 47/200 (23%), Positives = 72/200 (36%), Gaps = 5/200 (2%)
Query: 81 MNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLTVLVLGNNKLVGSIPFE 140
N ++ P F L RL TL L L P + L L L +N L
Sbjct: 89 DNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDT 148
Query: 141 FVSLYKLKQLALPMNNLTGGIPPFLGNLTSLEVVSLAGNPFGGNIPDSLGQLKELKTLGI 200
F L L L L N ++ L SL+ + L N P + L L TL +
Sbjct: 149 FRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYL 208
Query: 201 GGNNLSGSIPPSIYNLSFLVIFSVSENQMHGSLPPSLGLYFPNLKLFQTNENFFSGSIPI 260
NNLS ++ L L +++N + L+ F+ + + S+P
Sbjct: 209 FANNLSALPTEALAPLRALQYLRLNDNPWVCD--CRARPLWAWLQKFRGSSSEVPCSLPQ 266
Query: 261 SLSNASKLEYVEIASNSFFG 280
L+ + +A+N G
Sbjct: 267 RLAG---RDLKRLAANDLQG 283
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 64.4 bits (155), Expect = 6e-12
Identities = 51/273 (18%), Positives = 91/273 (33%), Gaps = 15/273 (5%)
Query: 88 EIPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKL 147
+P+ + + L N + A+ C LT+L L +N L F L L
Sbjct: 25 AVPVGIPAA--SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALL 82
Query: 148 KQLALPMNNLTGGIPP-FLGNLTSLEVVSLAGNPFGGNIPDSLGQLKELKTLGIGGNNLS 206
+QL L N + P L L + L P L L+ L + N L
Sbjct: 83 EQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ 142
Query: 207 GSIPPSIYNLSFLVIFSVSENQMHGSLPPSLGLYFPNLKLFQTNENFFSGSIPISLSNAS 266
+ +L L + N++ +P +L ++N + P + +
Sbjct: 143 ALPDDTFRDLGNLTHLFLHGNRISS-VPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLG 201
Query: 267 KLEYVEIASNSFFGKLSVNFGGMKNLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLS 326
+L + + +N+ + ++ L YL L N + + LQ
Sbjct: 202 RLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW-VCDCRARPLW------AWLQKFR 254
Query: 327 LGGNQFRGALPHSIANLSSQLQILVLGTNQLYG 359
++ +LP +A + L N L G
Sbjct: 255 GSSSEVPCSLPQRLAGRD----LKRLAANDLQG 283
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 57.1 bits (136), Expect = 1e-09
Identities = 40/247 (16%), Positives = 76/247 (30%), Gaps = 27/247 (10%)
Query: 384 SIPKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLGDNNLSGVIPSSLGNLERL 443
++P + Q + GN S ++ +L ++L N L+ + ++ L L
Sbjct: 25 AVPVGIPA--ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALL 82
Query: 444 AILEMFANELSGTIPGDIFNISSLSVSLDLAENHFVGSIPPRIGNLKALRCFDVSNNDLS 503
L++ N ++ F+ +L L P L AL+ + +N L
Sbjct: 83 EQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ 142
Query: 504 GEIPSELGLCSSLEEIYLAENFFNGFIPSFFRTSRGIRKVDLSRNNFFGQIPIFLEAL-- 561
+L ++L N + FR + ++ L +N P L
Sbjct: 143 ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGR 202
Query: 562 -----------------------SLEYLNLSFNDFEGRLPTRGIFANASAISVGGCNRLC 598
+L+YL L+ N + R ++A C
Sbjct: 203 LMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPC 262
Query: 599 GGIHELQ 605
L
Sbjct: 263 SLPQRLA 269
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 59.3 bits (142), Expect = 3e-10
Identities = 40/271 (14%), Positives = 88/271 (32%), Gaps = 10/271 (3%)
Query: 101 TLLLSDNSLVGKIPANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTG- 159
TL L+ +L + L S+ + + E S ++++ + L + +
Sbjct: 4 TLDLTGKNLHPDVTGRL--LSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVS 61
Query: 160 GIPPFLGNLTSLEVVSLAGNPFGGNIPDSLGQLKELKTLGIGG--NNLSGSIPPSIYNLS 217
+ L + L+ +SL G I ++L + L L + G ++ + + S
Sbjct: 62 TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCS 121
Query: 218 FLVIFSVSENQMHGSLPPSLGLYFPNLKLFQTNENFFSGSIPISLSNASKLEYVEIASNS 277
L ++S + + + + Q N + + ++ S + +
Sbjct: 122 RLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLD 181
Query: 278 FFGKLSVNFGGMKNLSYL-ILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGAL 336
+ + + L L++ +L + L L+ L + G G L
Sbjct: 182 LSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTL 241
Query: 337 PHSIANLSSQLQILVLGTNQLYGSIPSGIGN 367
L L L + + IGN
Sbjct: 242 QL----LKEALPHLQINCSHFTTIARPTIGN 268
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.3 bits (103), Expect = 2e-05
Identities = 39/296 (13%), Positives = 88/296 (29%), Gaps = 29/296 (9%)
Query: 53 TCDLRSKALSGLLSPQIGNLSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGK 112
T DL K L ++ ++ + + + + + F R ++ + LS++ +
Sbjct: 4 TLDLTGKNLHPDVTGRLLSQG-VIAFRCPRSFMDQPLAEHFSPFR-VQHMDLSNSVIEVS 61
Query: 113 -IPANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTGGIPPFLGNLTSL 171
+ LS CS+L L L +L I L +L L +
Sbjct: 62 TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSG-------------- 107
Query: 172 EVVSLAGNPFGGNIPDSLGQLKELKTLGIGGNNLSGSIPPSIYNLSFLVIFSVSENQMHG 231
S + L +L ++ ++ ++ L + +N
Sbjct: 108 --FSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKS 165
Query: 232 SLPPSLGLYFPNLKLFQTNENFFSGSIPISLSNASKLEYVEIASNSFFGKLSV-NFGGMK 290
L + + L ++ + L+++ ++ ++ G +
Sbjct: 166 DLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIP 225
Query: 291 NLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLSSQ 346
L L + G + LQ+ + F +I N +Q
Sbjct: 226 TLKTLQV------FGIVPDGTLQLLKEALPHLQINC---SHFTTIARPTIGNKKNQ 272
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.8 bits (99), Expect = 7e-05
Identities = 43/275 (15%), Positives = 89/275 (32%), Gaps = 12/275 (4%)
Query: 150 LALPMNNLTGGIPPFLGNLTSLEVVSL--AGNPFGGNIPDSLGQLKELKTLGIGGNNLSG 207
L L NL + G L S V++ + + + + ++ + + + +
Sbjct: 5 LDLTGKNLHPDV---TGRLLSQGVIAFRCPRSFMDQPLAEHFSPFR-VQHMDLSNSVIEV 60
Query: 208 SIPPSIY-NLSFLVIFSVSENQMHGSLPPSLGLYFPNLKL-FQTNENFFSGSIPISLSNA 265
S I S L S+ ++ + +L ++L F ++ LS+
Sbjct: 61 STLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSC 120
Query: 266 SKLEYVEIASNSFFGKLSVNFGGMKNLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVL 325
S+L+ + ++ F + V + + + + C L L
Sbjct: 121 SRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHL 180
Query: 326 SLGGNQFRGALPHSIANLSSQLQILVL-GTNQLYGSIPSGIGNLVNLYSLQTEENQFTGS 384
L + + LQ L L + +G + L +LQ G+
Sbjct: 181 DLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGT 240
Query: 385 IPKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSL 419
+ L +LQ +HF+ T+GN +
Sbjct: 241 LQLLKEALPHLQ---INCSHFTTIARPTIGNKKNQ 272
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.2 bits (95), Expect = 2e-04
Identities = 17/103 (16%), Positives = 34/103 (33%), Gaps = 3/103 (2%)
Query: 348 QILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSG 407
Q L L L+ + + + + + + + + E +Q +D +
Sbjct: 3 QTLDLTGKNLHPDVTGRLLSQ-GVIAFRCPRSFMDQPLA-EHFSPFRVQHMDLSNSVIEV 60
Query: 408 E-IPSTLGNLSSLYEIFLGDNNLSGVIPSSLGNLERLAILEMF 449
+ L S L + L LS I ++L L L +
Sbjct: 61 STLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLS 103
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.2 bits (95), Expect = 2e-04
Identities = 30/235 (12%), Positives = 68/235 (28%), Gaps = 12/235 (5%)
Query: 313 MNSLANCSKLQVLSLGGNQFRGALPHSIANLSSQLQILVLGTNQLYGSIPSGIGNLVNLY 372
+ + ++Q + L + + H I + S+LQ L L +L I + + NL
Sbjct: 39 LAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLV 98
Query: 373 SLQTE--ENQFTGSIPKEMGKLLNLQGLDFGGNHFSG------EIPSTLGNLSSLYEIFL 424
L ++ + L L+ + ++ L
Sbjct: 99 RLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGY 158
Query: 425 GDNNLSGVIPSSLGNLERLAILEMFANELSGTIPGDIFNISSLSVSLDLAE-NHFVGSIP 483
N + + + L L++ + + F + L L+ +
Sbjct: 159 RKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETL 218
Query: 484 PRIGNLKALRCFDVSNNDLSGEIPSELGLCSSLEEIYLAENFFNGFIPSFFRTSR 538
+G + L+ V G + L +L + + + F +
Sbjct: 219 LELGEIPTLKTLQVFGIVPDGTLQL---LKEALPHLQINCSHFTTIARPTIGNKK 270
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.4 bits (85), Expect = 0.003
Identities = 43/259 (16%), Positives = 77/259 (29%), Gaps = 49/259 (18%)
Query: 275 SNSFFGKLSVNFGGMKNLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRG 334
SF + + ++ L + + L+ CSKLQ LSL G +
Sbjct: 31 PRSFMDQPLAEHFSPFRVQHMDLSNSVIEVS-----TLHGILSQCSKLQNLSLEGLRLSD 85
Query: 335 ALPHSIANLSSQLQIL--VLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTG--------S 384
+ +++A S+ L L + ++ + + + L L +
Sbjct: 86 PIVNTLAKNSN-LVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVA 144
Query: 385 IPKEMGKLLNLQGLDFGGNH-----------------------FSGEIPSTLGNLSSLYE 421
E LNL G + L+ L
Sbjct: 145 HVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQH 204
Query: 422 IFLGD-NNLSGVIPSSLGNLERLAILEMFANELSGTIPGDIFNISSLSVSLDLAENHFVG 480
+ L ++ LG + L L++F GT+ + L + +HF
Sbjct: 205 LSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQ----LLKEALPHLQINCSHFTT 260
Query: 481 SIPPRIGNLK-----ALRC 494
P IGN K ++C
Sbjct: 261 IARPTIGNKKNQEIWGIKC 279
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 54.0 bits (128), Expect = 1e-08
Identities = 33/209 (15%), Positives = 68/209 (32%), Gaps = 7/209 (3%)
Query: 365 IGNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFL 424
+ + + + ++ T ++P ++ K + L N +TL + L ++ L
Sbjct: 6 VSKVASHLEVNCDKRNLT-ALPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLTQLNL 62
Query: 425 GDNNLSGVIPSSLGNLERLAILEMFANELSGTIPGDIFNISSLSVSLDLAENHFVGSIPP 484
+ G L L L++ N+L + + + N
Sbjct: 63 --DRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVS--FNRLTSLPLG 118
Query: 485 RIGNLKALRCFDVSNNDLSGEIPSELGLCSSLEEIYLAENFFNGFIPSFFRTSRGIRKVD 544
+ L L+ + N+L P L LE++ LA N + +
Sbjct: 119 ALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLL 178
Query: 545 LSRNNFFGQIPIFLEALSLEYLNLSFNDF 573
L N+ + F + L + L N +
Sbjct: 179 LQENSLYTIPKGFFGSHLLPFAFLHGNPW 207
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.7 bits (117), Expect = 4e-07
Identities = 42/211 (19%), Positives = 71/211 (33%), Gaps = 8/211 (3%)
Query: 92 EFGRLRRLETLLLSDNSLVGKIPANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLA 151
E ++ + +L +P +L T+L L N L + +L QL
Sbjct: 5 EVSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLN 61
Query: 152 LPMNNLTGGIPPFLGNLTSLEVVSLAGNPFGGNIPDSLGQLKELKTLGIGGNNLSGSIPP 211
L + G L L + L+ N L L L + N L+
Sbjct: 62 L--DRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLG-QTLPALTVLDVSFNRLTSLPLG 118
Query: 212 SIYNLSFLVIFSVSENQMHGSLPPSLGLYFPNLKLFQTNENFFSGSIPISLSNASKLEYV 271
++ L L + N++ +LPP L P L+ N + L+ L+ +
Sbjct: 119 ALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTL 177
Query: 272 EIASNSFFGKLSVNFGGMKNLSYLILEYNNL 302
+ NS + + F G L + L N
Sbjct: 178 LLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.3 bits (116), Expect = 4e-07
Identities = 41/210 (19%), Positives = 67/210 (31%), Gaps = 9/210 (4%)
Query: 318 NCSKLQVLSLGGNQFRGALPHSIANLSSQLQILVLGTNQLYGSIPSGIGNLVNLYSLQTE 377
+ ++ ALP +L IL L N LY + + L L +
Sbjct: 8 KVASHLEVNCDKRNLT-ALP---PDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLD 63
Query: 378 ENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLGDNNLSGVIPSSL 437
+ T +L ++ +P L +L + + N L+ + +L
Sbjct: 64 RAELTKLQVDGTLPVLGTL---DLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGAL 120
Query: 438 GNLERLAILEMFANELSGTIPGDIFNISSLSVSLDLAENHFVGSIPPRIGNLKALRCFDV 497
L L L + NEL PG + L LA N+ + L+ L +
Sbjct: 121 RGLGELQELYLKGNELKTLPPGLLTPT-PKLEKLSLANNNLTELPAGLLNGLENLDTLLL 179
Query: 498 SNNDLSGEIPSELGLCSSLEEIYLAENFFN 527
N L IP L +L N +
Sbjct: 180 QENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.7 bits (104), Expect = 2e-05
Identities = 42/211 (19%), Positives = 74/211 (35%), Gaps = 8/211 (3%)
Query: 68 QIGNLSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLTVLV 127
++ ++ E+N + +P + + L LS+N L A L +RLT L
Sbjct: 5 EVSKVASHLEVNCDKRNLT-ALPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLTQLN 61
Query: 128 LGNNKLVGSIPFEFVSLYKLKQLALPMNNLTGGIPPFLGNLTSLEVVSLAGNPFGGNIPD 187
L + + + +N +P L +L V+ ++ N
Sbjct: 62 LDRAE---LTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLG 118
Query: 188 SLGQLKELKTLGIGGNNLSGSIPPSIYNLSFLVIFSVSENQMHGSLPPSLGLYFPNLKLF 247
+L L EL+ L + GN L P + L S++ N + L NL
Sbjct: 119 ALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLN-GLENLDTL 177
Query: 248 QTNENFFSGSIPISLSNASKLEYVEIASNSF 278
EN +IP + L + + N +
Sbjct: 178 LLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.3 bits (103), Expect = 2e-05
Identities = 41/217 (18%), Positives = 65/217 (29%), Gaps = 17/217 (7%)
Query: 120 CSRLTVLV---LGNNKLVGSIPFEFVSLYKLKQLALPMNNLTGGIPPFLGNLTSLEVVSL 176
S++ + L ++P + L L N L L T L ++L
Sbjct: 6 VSKVASHLEVNCDKRNLT-ALPPDLPKD--TTILHLSENLLYTFSLATLMPYTRLTQLNL 62
Query: 177 AGNPFGGNIPDSLGQLKELKTLGIGGNNLSGSIPPSIYNLSFLVIFSVSENQMHGSLPPS 236
D L L TL + N L + SLP
Sbjct: 63 DRAELTKLQVDG--TLPVLGTLDLSHNQLQSLPLLGQTL--PALTVLDVSFNRLTSLPLG 118
Query: 237 LGLYFPNLKLFQTNENFFSGSIPISLSNASKLEYVEIASNSFFGKLSVNFGGMKNLSYLI 296
L+ N P L+ KLE + +A+N+ + G++NL L+
Sbjct: 119 ALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLL 178
Query: 297 LEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFR 333
L+ N+L + L L GN +
Sbjct: 179 LQENSLYT-------IPKGFFGSHLLPFAFLHGNPWL 208
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.8 bits (99), Expect = 7e-05
Identities = 43/189 (22%), Positives = 67/189 (35%), Gaps = 12/189 (6%)
Query: 290 KNLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLSSQLQI 349
K+ + L L N L + +L ++L L+L + + + +
Sbjct: 31 KDTTILHLSENLLYTFSLA------TLMPYTRLTQLNLDRAEL----TKLQVDGTLPVLG 80
Query: 350 LVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEI 409
+ ++ S+P L L L N+ T + L LQ L GN
Sbjct: 81 TLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP 140
Query: 410 PSTLGNLSSLYEIFLGDNNLSGVIPSSLGNLERLAILEMFANELSGTIPGDIFNISSLSV 469
P L L ++ L +NNL+ + L LE L L + N L TIP F L
Sbjct: 141 PGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLP- 198
Query: 470 SLDLAENHF 478
L N +
Sbjct: 199 FAFLHGNPW 207
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Score = 52.9 bits (125), Expect = 2e-08
Identities = 39/195 (20%), Positives = 70/195 (35%), Gaps = 11/195 (5%)
Query: 318 NCSKLQVLSLGGNQFRGALPHSIANLSSQLQILVLGTNQLYGSIPSGI-GNLVNLYSLQT 376
+C V G + +P ++ L+L N+L G+ G L +L L+
Sbjct: 7 HCEGTTV-DCTGRGLK-EIP---RDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLEL 61
Query: 377 EENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLGDNNLSGVIPSS 436
+ NQ TG P ++Q L G N L L + L DN +S V+P S
Sbjct: 62 KRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGS 121
Query: 437 LGNLERLAILEMFANELSGTIPGDIFNISSLSVSLDLAENHFVGSIPPRIGNLKALRCFD 496
+L L L + +N + + + L P ++ ++ D
Sbjct: 122 FEHLNSLTSLNLASNPFNCNCH--LAWFAEWLRKKSLNGGAARCGAPS---KVRDVQIKD 176
Query: 497 VSNNDLSGEIPSELG 511
+ +++ + G
Sbjct: 177 LPHSEFKCSSENSEG 191
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Score = 40.9 bits (94), Expect = 1e-04
Identities = 32/169 (18%), Positives = 66/169 (39%), Gaps = 8/169 (4%)
Query: 360 SIPSGIGNLVNLYSLQTEENQFTGSIPKEM-GKLLNLQGLDFGGNHFSGEIPSTLGNLSS 418
IP I + L +N+ + G+L +L L+ N +G P+ S
Sbjct: 22 EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASH 79
Query: 419 LYEIFLGDNNLSGVIPSSLGNLERLAILEMFANELSGTIPGDIFNISSLSVSLDLAENHF 478
+ E+ LG+N + + L +L L ++ N++S +PG +++SL+ ++
Sbjct: 80 IQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNL--ASNP 137
Query: 479 VGSIPPRIGNLKALRCFDVSNNDLSGEIPSELGLCSSLEEIYLAENFFN 527
+ LR ++ PS++ ++ L + F
Sbjct: 138 FNCNCHLAWFAEWLRKKSLNGGAARCGAPSKV---RDVQIKDLPHSEFK 183
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 48.7 bits (114), Expect = 1e-06
Identities = 22/93 (23%), Positives = 38/93 (40%), Gaps = 9/93 (9%)
Query: 104 LSDNSLVGKIPANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTGGIPP 163
N+ +I + L L + NNKL+ +P +L++L N+L +P
Sbjct: 267 YYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELP---ALPPRLERLIASFNHLAE-VPE 321
Query: 164 FLGNLTSLEVVSLAGNPFGGNIPDSLGQLKELK 196
NL L + NP PD +++L+
Sbjct: 322 LPQNLKQL---HVEYNPLRE-FPDIPESVEDLR 350
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 47.9 bits (112), Expect = 2e-06
Identities = 25/95 (26%), Positives = 36/95 (37%), Gaps = 9/95 (9%)
Query: 79 NLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLTVLVLGNNKLVGSIP 138
N EI LE L +S+N L+ ++PA RL L+ N L +P
Sbjct: 266 LYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALP---PRLERLIASFNHL-AEVP 320
Query: 139 FEFVSLYKLKQLALPMNNLTGGIPPFLGNLTSLEV 173
LKQL + N L P ++ L +
Sbjct: 321 E---LPQNLKQLHVEYNPLR-EFPDIPESVEDLRM 351
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 46.0 bits (107), Expect = 8e-06
Identities = 18/90 (20%), Positives = 29/90 (32%), Gaps = 9/90 (10%)
Query: 130 NNKLVGSIPFEFVSLYKLKQLALPMNNLTGGIPPFLGNLTSLEVVSLAGNPFGGNIPDSL 189
N I L++L + N L +P L L + N +P+
Sbjct: 269 LNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPALPPRLERL---IASFNHLA-EVPELP 323
Query: 190 GQLKELKTLGIGGNNLSGSIPPSIYNLSFL 219
LK+L + N L P ++ L
Sbjct: 324 QNLKQLH---VEYNPLR-EFPDIPESVEDL 349
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 45.2 bits (105), Expect = 1e-05
Identities = 16/85 (18%), Positives = 30/85 (35%), Gaps = 10/85 (11%)
Query: 312 FMNSLANCSKLQVLSLGGNQFRGALPHSIANLSSQLQILVLGTNQLYGSIPSGIGNLVNL 371
+ L+ L++ N+ + L +L+ L+ N L +P NL L
Sbjct: 276 IRSLCDLPPSLEELNVSNNKLI-----ELPALPPRLERLIASFNHL-AEVPELPQNLKQL 329
Query: 372 YSLQTEENQFTGSIPKEMGKLLNLQ 396
+ E N P + +L+
Sbjct: 330 H---VEYNPLR-EFPDIPESVEDLR 350
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 44.4 bits (103), Expect = 3e-05
Identities = 16/76 (21%), Positives = 27/76 (35%), Gaps = 9/76 (11%)
Query: 345 SQLQILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNH 404
L+ L + N+L +P+ L L + N +P+ NL+ L N
Sbjct: 284 PSLEELNVSNNKL-IELPALPPRLERLIA---SFNHLA-EVPELPQ---NLKQLHVEYNP 335
Query: 405 FSGEIPSTLGNLSSLY 420
E P ++ L
Sbjct: 336 LR-EFPDIPESVEDLR 350
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 42.5 bits (98), Expect = 1e-04
Identities = 24/91 (26%), Positives = 36/91 (39%), Gaps = 10/91 (10%)
Query: 403 NHFSGEIPSTLGNLSSLYEIFLGDNNLSGVIPSSLGNLERLAILEMFANELSGTIPGDIF 462
N S EI S SL E+ + +N L +P+ LER L N L+ +P
Sbjct: 270 NASSNEIRSLCDLPPSLEELNVSNNKLIE-LPALPPRLER---LIASFNHLA-EVPELPQ 324
Query: 463 NISSLSVSLDLAENHFVGSIPPRIGNLKALR 493
N+ L + N P +++ LR
Sbjct: 325 NLK----QLHVEYNPLR-EFPDIPESVEDLR 350
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 40.2 bits (92), Expect = 6e-04
Identities = 18/89 (20%), Positives = 34/89 (38%), Gaps = 10/89 (11%)
Query: 448 MFANELSGTIPGDIFNISSLSVSLDLAENHFVGSIPPRIGNLKALRCFDVSNNDLSGEIP 507
+ N S I SL L+++ N + +P L+ L S N L+ E+P
Sbjct: 267 YYLNASSNEIRSLCDLPPSLEE-LNVSNNKLI-ELPALPPRLERL---IASFNHLA-EVP 320
Query: 508 SELGLCSSLEEIYLAENFFNGFIPSFFRT 536
+L+++++ N P +
Sbjct: 321 ELPQ---NLKQLHVEYNPLRE-FPDIPES 345
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.7 bits (111), Expect = 3e-06
Identities = 16/88 (18%), Positives = 24/88 (27%), Gaps = 6/88 (6%)
Query: 285 NFGGMKNLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRG----ALPHSI 340
L L L ++ S +L L+ L L N L S+
Sbjct: 364 LGQPGSVLRVLWLADCDVSD--SSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESV 421
Query: 341 ANLSSQLQILVLGTNQLYGSIPSGIGNL 368
L+ LVL + + L
Sbjct: 422 RQPGCLLEQLVLYDIYWSEEMEDRLQAL 449
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.9 bits (109), Expect = 6e-06
Identities = 13/90 (14%), Positives = 30/90 (33%), Gaps = 5/90 (5%)
Query: 75 LREINLMNNTIQGEIPLE-FGRLRRLETLLLSDNSL----VGKIPANLSYCSRLTVLVLG 129
++ +++ + E L++ + + L D L I + L L L L
Sbjct: 4 IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63
Query: 130 NNKLVGSIPFEFVSLYKLKQLALPMNNLTG 159
+N+L + + + +L
Sbjct: 64 SNELGDVGVHCVLQGLQTPSCKIQKLSLQN 93
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.0 bits (99), Expect = 8e-05
Identities = 15/77 (19%), Positives = 28/77 (36%), Gaps = 5/77 (6%)
Query: 369 VNLYSLQTEENQFTGSIPKEMGKLL-NLQGLDFGGNHFSGE----IPSTLGNLSSLYEIF 423
+++ SL + + + + E+ LL Q + + I S L +L E+
Sbjct: 2 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 61
Query: 424 LGDNNLSGVIPSSLGNL 440
L N L V +
Sbjct: 62 LRSNELGDVGVHCVLQG 78
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.0 bits (99), Expect = 9e-05
Identities = 12/90 (13%), Positives = 32/90 (35%), Gaps = 7/90 (7%)
Query: 268 LEYVEIASNSF-FGKLSVNFGGMKNLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLS 326
++ ++I + + ++ + L+ L ++ ++L L L+
Sbjct: 4 IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDIS--SALRVNPALAELN 61
Query: 327 LGGNQFRG----ALPHSIANLSSQLQILVL 352
L N+ + + S ++Q L L
Sbjct: 62 LRSNELGDVGVHCVLQGLQTPSCKIQKLSL 91
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.7 bits (98), Expect = 1e-04
Identities = 16/91 (17%), Positives = 35/91 (38%), Gaps = 9/91 (9%)
Query: 488 NLKALRCFDVSNNDLSGE----IPSELGLCSSLEEIYLAENFFNG-----FIPSFFRTSR 538
LR +++ D+S + + L SL E+ L+ N + S +
Sbjct: 367 PGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGC 426
Query: 539 GIRKVDLSRNNFFGQIPIFLEALSLEYLNLS 569
+ ++ L + ++ L+AL + +L
Sbjct: 427 LLEQLVLYDIYWSEEMEDRLQALEKDKPSLR 457
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.5 bits (95), Expect = 2e-04
Identities = 15/117 (12%), Positives = 31/117 (26%), Gaps = 26/117 (22%)
Query: 305 GESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLSSQLQILVLGTNQLYGSIPSG 364
S L+VL L ++ S+ +
Sbjct: 354 DAGVRELCQGLGQPGSVLRVLWLADCDV---------------------SDSSCSSLAAT 392
Query: 365 IGNLVNLYSLQTEENQFTGSIPKEMGKLL-----NLQGLDFGGNHFSGEIPSTLGNL 416
+ +L L N + ++ + + L+ L ++S E+ L L
Sbjct: 393 LLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQAL 449
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.1 bits (94), Expect = 4e-04
Identities = 15/82 (18%), Positives = 25/82 (30%), Gaps = 9/82 (10%)
Query: 370 NLYSLQTEENQFTG----SIPKEMGKLLNLQGLDFGGNHFSGEIPSTLG-----NLSSLY 420
L L + + S+ + +L+ LD N L L
Sbjct: 370 VLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLE 429
Query: 421 EIFLGDNNLSGVIPSSLGNLER 442
++ L D S + L LE+
Sbjct: 430 QLVLYDIYWSEEMEDRLQALEK 451
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.3 bits (92), Expect = 5e-04
Identities = 16/93 (17%), Positives = 27/93 (29%), Gaps = 9/93 (9%)
Query: 322 LQVLSLGGNQFRGALPHSIANLSSQLQILVLGTNQL----YGSIPSGIGNLVNLYSLQTE 377
+Q L + + A + L Q Q++ L L I S + L L
Sbjct: 4 IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63
Query: 378 ENQFTGSIPKEMGKLL-----NLQGLDFGGNHF 405
N+ + + L +Q L
Sbjct: 64 SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCL 96
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.3 bits (92), Expect = 6e-04
Identities = 19/88 (21%), Positives = 33/88 (37%), Gaps = 10/88 (11%)
Query: 458 PGDIFNISSLSVSLDLAENHF----VGSIPPRIGNLKALRCFDVSNNDLSGEIPSELG-- 511
G S L V L LA+ S+ + +LR D+SNN L +L
Sbjct: 362 QGLGQPGSVLRV-LWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVES 420
Query: 512 ---LCSSLEEIYLAENFFNGFIPSFFRT 536
LE++ L + +++ + +
Sbjct: 421 VRQPGCLLEQLVLYDIYWSEEMEDRLQA 448
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.3 bits (92), Expect = 6e-04
Identities = 16/93 (17%), Positives = 34/93 (36%), Gaps = 11/93 (11%)
Query: 492 LRCFDVSNNDLSGEIPSEL-GLCSSLEEIYLAENFFNG----FIPSFFRTSRGIRKVDLS 546
++ D+ +LS +EL L + + L + I S R + + +++L
Sbjct: 4 IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63
Query: 547 RNNFFGQ-IPIFLEAL-----SLEYLNLSFNDF 573
N + L+ L ++ L+L
Sbjct: 64 SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCL 96
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.3 bits (92), Expect = 7e-04
Identities = 13/77 (16%), Positives = 25/77 (32%), Gaps = 9/77 (11%)
Query: 146 KLKQLALPMNNLTG----GIPPFLGNLTSLEVVSLAGNPFGGNIPDSLGQ-----LKELK 196
L+ L L +++ + L SL + L+ N G L + L+
Sbjct: 370 VLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLE 429
Query: 197 TLGIGGNNLSGSIPPSI 213
L + S + +
Sbjct: 430 QLVLYDIYWSEEMEDRL 446
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.8 bits (88), Expect = 0.002
Identities = 16/90 (17%), Positives = 31/90 (34%), Gaps = 5/90 (5%)
Query: 123 LTVLVLGNNKLVGSIPFEFVS-LYKLKQLALPMNNLTG----GIPPFLGNLTSLEVVSLA 177
+ L + +L + E + L + + + L LT I L +L ++L
Sbjct: 4 IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63
Query: 178 GNPFGGNIPDSLGQLKELKTLGIGGNNLSG 207
N G + Q + + I +L
Sbjct: 64 SNELGDVGVHCVLQGLQTPSCKIQKLSLQN 93
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.4 bits (87), Expect = 0.003
Identities = 12/93 (12%), Positives = 27/93 (29%), Gaps = 5/93 (5%)
Query: 344 SSQLQILVLGTNQL-YGSIPSGIGNLVNLYSLQTEENQFTGSIPKEMGKLL----NLQGL 398
S +Q L + +L + L ++ ++ T + K++ L L L
Sbjct: 1 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 60
Query: 399 DFGGNHFSGEIPSTLGNLSSLYEIFLGDNNLSG 431
+ N + + +L
Sbjct: 61 NLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQN 93
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.6 bits (85), Expect = 0.004
Identities = 16/97 (16%), Positives = 32/97 (32%), Gaps = 10/97 (10%)
Query: 262 LSNASKLEYVEIASNSF----FGKLSVNFGGMKNLSYLILEYNNLGSGESDEMGFMNSLA 317
S L + +A L+ +L L L N L G++ + + S+
Sbjct: 365 GQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCL--GDAGILQLVESVR 422
Query: 318 -NCSKLQVLSLGGNQFRGALPHSIANLSS---QLQIL 350
L+ L L + + + L L+++
Sbjct: 423 QPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVI 459
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.3 bits (106), Expect = 3e-06
Identities = 30/137 (21%), Positives = 54/137 (39%), Gaps = 7/137 (5%)
Query: 66 SPQIGNLSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLTV 125
+ Q N RE++L I I L + + + SDN + + RL
Sbjct: 11 AAQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEI--RKLDGFPLLRRLKT 67
Query: 126 LVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTG-GIPPFLGNLTSLEVVSLAGNPF--- 181
L++ NN++ +L L +L L N+L G L +L SL + + NP
Sbjct: 68 LLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNK 127
Query: 182 GGNIPDSLGQLKELKTL 198
+ ++ +++ L
Sbjct: 128 KHYRLYVIYKVPQVRVL 144
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.5 bits (83), Expect = 0.003
Identities = 13/75 (17%), Positives = 23/75 (30%), Gaps = 4/75 (5%)
Query: 315 SLANCSKLQVLSLGGNQFRGALPHSIANLSSQLQILVLGTNQLYGSIPSGIGNLVNLYSL 374
N + + L L G + + + A L Q + N++ G L L +L
Sbjct: 13 QYTNAVRDRELDLRGYKIP-VIENLGATL-DQFDAIDFSDNEIR--KLDGFPLLRRLKTL 68
Query: 375 QTEENQFTGSIPKEM 389
N+
Sbjct: 69 LVNNNRICRIGEGLD 83
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 41.6 bits (97), Expect = 4e-05
Identities = 22/120 (18%), Positives = 36/120 (30%), Gaps = 7/120 (5%)
Query: 398 LDFGGNHFSGEIPSTLGNLSSLYEIFLGDNNLSGVIPSSLGNLERLAILEMFANELSGTI 457
L + + L L + + L N L + P+ L L L +L+ N L
Sbjct: 3 LHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQASDNALENVD 59
Query: 458 PGDIFNISSLSVSLDLAENHFVG-SIPPRIGNLKALRCFDVSNNDLSGEIPSELGLCSSL 516
L L N + + + L ++ N L E + L L
Sbjct: 60 GVANLPRLQ---ELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEML 116
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 40.5 bits (94), Expect = 9e-05
Identities = 27/121 (22%), Positives = 46/121 (38%), Gaps = 7/121 (5%)
Query: 76 REINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLTVLVLGNNKLVG 135
R ++L + + + +L + L LS N L P L+ L VL +N L
Sbjct: 1 RVLHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALEN 57
Query: 136 SIPFEFVSLYKLKQLALPMNNLTGGIPP-FLGNLTSLEVVSLAGNPFGGNIPDSLGQLKE 194
+ +L++L L N L L + L +++L GN +L E
Sbjct: 58 VDGVANL--PRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ-EEGIQERLAE 114
Query: 195 L 195
+
Sbjct: 115 M 115
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 38.5 bits (89), Expect = 4e-04
Identities = 31/118 (26%), Positives = 48/118 (40%), Gaps = 7/118 (5%)
Query: 55 DLRSKALSGLLSPQIGNLSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIP 114
L K L+ L + L + ++L +N ++ P LR LE L SDN +
Sbjct: 4 HLAHKDLTVL--CHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDN--ALENV 58
Query: 115 ANLSYCSRLTVLVLGNNKLVG-SIPFEFVSLYKLKQLALPMNNLTGGIPPFLGNLTSL 171
++ RL L+L NN+L + VS +L L L N+L L +
Sbjct: 59 DGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC-QEEGIQERLAEM 115
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 38.2 bits (88), Expect = 5e-04
Identities = 21/113 (18%), Positives = 36/113 (31%), Gaps = 7/113 (6%)
Query: 471 LDLAENHFVGSIPPRIGNLKALRCFDVSNNDLSGEIPSELGLCSSLEEIYLAENFFNGFI 530
L LA ++ + L + D+S+N L P+ L LE + ++N
Sbjct: 3 LHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQASDNALENVD 59
Query: 531 PSFFRTSRGIRKVDLSRNNF--FGQIPIFLEALSLEYLNLSFNDFEGRLPTRG 581
+++ L N I + L LNL N +
Sbjct: 60 GVANLPRL--QELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQE 110
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 37.4 bits (86), Expect = 0.001
Identities = 26/108 (24%), Positives = 39/108 (36%), Gaps = 6/108 (5%)
Query: 101 TLLLSDNSLVGKIPANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTGG 160
L L+ L + +L +T L L +N+L P +L L+ L N L
Sbjct: 2 VLHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALE-- 56
Query: 161 IPPFLGNLTSLEVVSLAGNPF-GGNIPDSLGQLKELKTLGIGGNNLSG 207
+ NL L+ + L N L L L + GN+L
Sbjct: 57 NVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Score = 43.3 bits (100), Expect = 6e-05
Identities = 39/324 (12%), Positives = 92/324 (28%), Gaps = 31/324 (9%)
Query: 147 LKQLALPMNNLTG----GIPPFLGNLTSLEVVSLAGNPFGGN----IPDSLGQLKELKTL 198
++ +L ++ +T + L S++ + L+GN G + +++ K+L+
Sbjct: 5 IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 64
Query: 199 GIGGN---NLSGSIPPSIYNLSFLVIFSVSENQMHGSLPPSLGLYFPNLKLFQTNENFFS 255
+ IP ++ L ++ + + S L F +
Sbjct: 65 EFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLE 124
Query: 256 GSIPISLSNASKLEYVEIASNSFFGKLSVNFGGMKNLSYLILEYNNLGSG------ESDE 309
+ + + +IA ++ L +I N L +G ++ +
Sbjct: 125 -HLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQ 183
Query: 310 MGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLSSQLQILVLGTNQLYGSIPSGIGNLV 369
+ + + G L T+ ++ + +
Sbjct: 184 SHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWP 243
Query: 370 NLYSLQTEENQFTGSIPKEMGKLL------NLQGLDFGGNHFSGEIPSTL-----GNLSS 418
NL L + + + LQ L N + TL +
Sbjct: 244 NLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPD 303
Query: 419 LYEIFLGDNNLS--GVIPSSLGNL 440
L + L N S + + +
Sbjct: 304 LLFLELNGNRFSEEDDVVDEIREV 327
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Score = 42.9 bits (99), Expect = 8e-05
Identities = 43/322 (13%), Positives = 85/322 (26%), Gaps = 26/322 (8%)
Query: 65 LSPQIGNLSFLREINLMNNTIQGE----IPLEFGRLRRLETLLLSDNSLVGKIPANLSYC 120
+ + ++EI L NTI E + + LE SD
Sbjct: 23 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEAL 82
Query: 121 SRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTGGIPPFLGNLTSLEVVSLAGNP 180
L +L KL + ++ + + +
Sbjct: 83 RLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHL-------------YLH 129
Query: 181 FGGNIPDSLGQLKELKTLGIGGNNLSGSIPPSIYNLSFLVIFSVSENQMHGSLPPSLGLY 240
G P + ++ + P + + S + + L+
Sbjct: 130 NNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLH 189
Query: 241 FPNLKLFQTNENFFSGSIPISLSNASKLEYVEIASNSFF----GKLSVNFGGMKNLSYLI 296
+ + L+ +L+ +++ N+F L++ NL L
Sbjct: 190 TVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELG 249
Query: 297 LEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRG----ALPHSIANLSSQLQILVL 352
L L + + + S LQ L L N+ L I L L L
Sbjct: 250 LNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLEL 309
Query: 353 GTNQLYGSIPSGIGNLVNLYSL 374
N+ + + ++S
Sbjct: 310 NGNRF-SEEDDVVDEIREVFST 330
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Score = 37.6 bits (85), Expect = 0.003
Identities = 14/94 (14%), Positives = 29/94 (30%), Gaps = 4/94 (4%)
Query: 462 FNISSLSVSLDLAENHFVGSIPPRIGNLKALRCFDVSNNDLSGE----IPSELGLCSSLE 517
F+I S+ LD S+ + +++ +S N + E + + LE
Sbjct: 3 FSIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLE 62
Query: 518 EIYLAENFFNGFIPSFFRTSRGIRKVDLSRNNFF 551
++ F R + + L
Sbjct: 63 IAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLH 96
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Score = 38.9 bits (89), Expect = 0.001
Identities = 30/215 (13%), Positives = 64/215 (29%), Gaps = 15/215 (6%)
Query: 241 FPNLKLFQTNENFFSGSIPISLSNASKLEYVEIASNSFFGKLSVNFGGMKNLSYLILEYN 300
N ++ + ++ ++ + + + + NL L L+ N
Sbjct: 18 LANAIKIAAGKSNVTD--TVTQADLDGITTLSAFGTGV-TTIE-GVQYLNNLIGLELKDN 73
Query: 301 NLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLSSQLQILVLGTNQLYGS 360
+ + + S + ++ ++ + + L
Sbjct: 74 QITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQV 133
Query: 361 IPSGIGNLVNLYSLQTE-------ENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIPSTL 413
+ + + N+ L S + L L L N S P L
Sbjct: 134 LYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP--L 191
Query: 414 GNLSSLYEIFLGDNNLSGVIPSSLGNLERLAILEM 448
+L +L E+ L +N +S V P L N L I+ +
Sbjct: 192 ASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTL 224
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Score = 38.1 bits (87), Expect = 0.002
Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Query: 360 SIPSGIGNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSL 419
S + + NL L +L+ ++N+ + P + L NL + N S P L N S+L
Sbjct: 164 SDLTPLANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNL 219
Query: 420 YEIFLGD 426
+ + L +
Sbjct: 220 FIVTLTN 226
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Score = 37.7 bits (86), Expect = 0.002
Identities = 18/91 (19%), Positives = 28/91 (30%), Gaps = 4/91 (4%)
Query: 40 WNDSRHFCEWEGITCDLRSKALSGLLSPQIGNLSFLREINLMNNTIQGEIPLEFGRLRRL 99
+ L + NLS L + +N I P L L
Sbjct: 140 QITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP--LASLPNL 197
Query: 100 ETLLLSDNSLVGKIPANLSYCSRLTVLVLGN 130
+ L +N + P L+ S L ++ L N
Sbjct: 198 IEVHLKNNQISDVSP--LANTSNLFIVTLTN 226
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Score = 37.3 bits (85), Expect = 0.003
Identities = 40/215 (18%), Positives = 79/215 (36%), Gaps = 16/215 (7%)
Query: 167 NLTSLEVVSLAGNPFGGNIPDSLGQLKELKTLGIGGNNLSGSIPPSIYNLSFLVIFSVSE 226
L + ++ + + + L + TL G ++ +I + L+ L+ + +
Sbjct: 17 ALANAIKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVT-TIEG-VQYLNNLIGLELKD 72
Query: 227 NQMHGSLPPS------LGLYFPNLKLFQTNENFFSGSIPISLSNASKLEYVEIASNSFFG 280
NQ+ P N + + L++ + +A S
Sbjct: 73 NQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQ 132
Query: 281 KLSVNFGGMKNLSYLILEYN-NLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHS 339
L ++ + N+S L N S + ++ + LAN SKL L N+ P
Sbjct: 133 VLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP-- 190
Query: 340 IANLSSQLQILVLGTNQLYGSIPSGIGNLVNLYSL 374
+A+L + L + L NQ+ P + N NL+ +
Sbjct: 191 LASLPN-LIEVHLKNNQISDVSP--LANTSNLFIV 222
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Score = 37.3 bits (85), Expect = 0.003
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Query: 116 NLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTGGIPPFLGNLTSLEVVS 175
L+ S+LT L +NK+ P SL L ++ L N ++ P L N ++L +V+
Sbjct: 168 PLANLSKLTTLKADDNKISDISPLA--SLPNLIEVHLKNNQISDVSP--LANTSNLFIVT 223
Query: 176 L 176
L
Sbjct: 224 L 224
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Score = 36.9 bits (84), Expect = 0.004
Identities = 36/229 (15%), Positives = 72/229 (31%), Gaps = 33/229 (14%)
Query: 143 SLYKLKQLALPMNNLTGGIPPFLGNLTSLEVVSLAGNPFGGNIPD--SLGQLKELKTLGI 200
+L ++A +N+T + +L + +S G + + L L L +
Sbjct: 17 ALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGT----GVTTIEGVQYLNNLIGLEL 70
Query: 201 GGNNLSGSIPPSIYNLSFLVIFSVSENQMHGSLPPSLGLYFPNLKLFQTNE--------- 251
N ++ P + S + + ++ + +L Q +
Sbjct: 71 KDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSN 130
Query: 252 ----NFFSGSIPISLSNASKLEYVEIASNSFFGKLSVNFGGMKNLSYLILEYNNLGSGES 307
I A ++ + + L+ L + N +
Sbjct: 131 LQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISD--- 187
Query: 308 DEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLSSQLQILVLGTNQ 356
++ LA+ L + L NQ P +AN S+ L I+ L TNQ
Sbjct: 188 -----ISPLASLPNLIEVHLKNNQISDVSP--LANTSN-LFIVTL-TNQ 227
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.6 bits (85), Expect = 0.003
Identities = 6/56 (10%), Positives = 15/56 (26%)
Query: 394 NLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLGDNNLSGVIPSSLGNLERLAILEMF 449
+ N+ S + + + + L NL++L +
Sbjct: 178 LDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTY 233
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.6 bits (85), Expect = 0.003
Identities = 7/51 (13%), Positives = 15/51 (29%), Gaps = 3/51 (5%)
Query: 161 IPPFLGNLTSLEVVSLAGNPFGGNIPDSLGQLKELKTLGIGGNNLSGSIPP 211
+ ++ ++ L LK+L+ NL +P
Sbjct: 193 PNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST--YNLK-KLPT 240
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 627 | |||
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 100.0 | |
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 99.97 | |
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 99.95 | |
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 99.95 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 99.92 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 99.91 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 99.91 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 99.91 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 99.87 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 99.86 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 99.82 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 99.78 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 99.77 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 99.77 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 99.72 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 99.72 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 99.7 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 99.69 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 99.69 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.67 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.66 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 99.66 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.64 | |
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.64 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.64 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 99.54 | |
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.54 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 99.52 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 99.52 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 99.5 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 99.46 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 99.46 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 99.25 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 99.23 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 99.22 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 99.17 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 98.26 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 98.12 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 97.74 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 97.73 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 97.05 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 96.95 |
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=100.00 E-value=8.4e-35 Score=286.98 Aligned_cols=295 Identities=27% Similarity=0.468 Sum_probs=217.5
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCC--cccceeecCCCCcceecccccCCCCCCCEEECCCCCCcc--c
Q 037951 13 AFEEGDLAALQAFKSMISHDPQGILNSWNDSRHFCE--WEGITCDLRSKALSGLLSPQIGNLSFLREINLMNNTIQG--E 88 (627)
Q Consensus 13 ~~~~~~~~~l~~~~~~~~~~~~~~~~~w~~~~~~c~--~~~~~c~l~~~~l~~~~~~~l~~l~~L~~L~Ls~~~~~~--~ 88 (627)
-|.++|++||.+||+.++ +| .++.+|....+||. |.||+||-.. .-.+++.|+|+++.+.+ .
T Consensus 2 ~c~~~e~~aLl~~k~~~~-~~-~~l~sW~~~~d~C~~~w~gv~C~~~~------------~~~~v~~L~L~~~~l~g~~~ 67 (313)
T d1ogqa_ 2 LCNPQDKQALLQIKKDLG-NP-TTLSSWLPTTDCCNRTWLGVLCDTDT------------QTYRVNNLDLSGLNLPKPYP 67 (313)
T ss_dssp CSCHHHHHHHHHHHHHTT-CC-GGGTTCCTTSCTTTTCSTTEEECCSS------------SCCCEEEEEEECCCCSSCEE
T ss_pred CCCHHHHHHHHHHHHHCC-CC-CcCCCCCCCCCCCCCcCCCeEEeCCC------------CcEEEEEEECCCCCCCCCCC
Confidence 488999999999999996 44 47899998889994 9999996322 12478899999999987 4
Q ss_pred CCcccCCCCCCCEEeCCC-CcCcccCCccccCCCCCCEEEccCccccccCCccccCCCCCCeeeCCCCCCCCCCCCCCCC
Q 037951 89 IPLEFGRLRRLETLLLSD-NSLVGKIPANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTGGIPPFLGN 167 (627)
Q Consensus 89 ~~~~~~~l~~L~~L~L~~-n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~ 167 (627)
+|.+++++++|++|+|++ |++++.+|..|+++++|++|++++|++.+..+..+..+.+|+++++++|.+.+.+|..+.+
T Consensus 68 lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~ 147 (313)
T d1ogqa_ 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISS 147 (313)
T ss_dssp CCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGG
T ss_pred CChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcccccccccccccCchhhcc
Confidence 789999999999999987 7899899999999999999999999999888888999999999999999988888888999
Q ss_pred CCCCCEEECCCCCCCCCCCCccCCCCCc-cEEEeeCccccccCCccccCCCCCcEEEeecccCccCCChhhhhcCCCCce
Q 037951 168 LTSLEVVSLAGNPFGGNIPDSLGQLKEL-KTLGIGGNNLSGSIPPSIYNLSFLVIFSVSENQMHGSLPPSLGLYFPNLKL 246 (627)
Q Consensus 168 l~~L~~L~L~~n~~~~~~~~~l~~l~~L-~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~ 246 (627)
++.|+++++++|.+.+.+|..+..+..+ +.+++++|++++..+..+..+..+ .+++..+...+.+|..
T Consensus 148 l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~-~l~l~~~~~~~~~~~~---------- 216 (313)
T d1ogqa_ 148 LPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLA-FVDLSRNMLEGDASVL---------- 216 (313)
T ss_dssp CTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCS-EEECCSSEEEECCGGG----------
T ss_pred Ccccceeeccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccc----------
Confidence 9999999999998888888888777665 778888888777766666655443 4666665555554444
Q ss_pred eccCCccccccCCccccCCCCCcEeecccccccccCccCcCCCCCcCEEeccCccCCCCCCCCccccccCCCCCcccEEE
Q 037951 247 FQTNENFFSGSIPISLSNASKLEYVEIASNSFFGKLSVNFGGMKNLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLS 326 (627)
Q Consensus 247 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~ 326 (627)
+..+++++.++++++.+.+.++ .+..+++|+.|++++|++++ .++..+..+++|++|+
T Consensus 217 ---------------~~~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g------~iP~~l~~L~~L~~L~ 274 (313)
T d1ogqa_ 217 ---------------FGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYG------TLPQGLTQLKFLHSLN 274 (313)
T ss_dssp ---------------CCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEE------CCCGGGGGCTTCCEEE
T ss_pred ---------------cccccccccccccccccccccc-ccccccccccccCccCeecc------cCChHHhCCCCCCEEE
Confidence 4444555555555555444333 24445555555555555554 2344455555666666
Q ss_pred ccCcccccccchhHHhccccccEEEeeccc
Q 037951 327 LGGNQFRGALPHSIANLSSQLQILVLGTNQ 356 (627)
Q Consensus 327 l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~ 356 (627)
+++|+++|.+|. +..+. +|+.+++++|+
T Consensus 275 Ls~N~l~g~iP~-~~~L~-~L~~l~l~~N~ 302 (313)
T d1ogqa_ 275 VSFNNLCGEIPQ-GGNLQ-RFDVSAYANNK 302 (313)
T ss_dssp CCSSEEEEECCC-STTGG-GSCGGGTCSSS
T ss_pred CcCCcccccCCC-cccCC-CCCHHHhCCCc
Confidence 666666655553 23333 56666666665
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=99.97 E-value=1.1e-30 Score=257.26 Aligned_cols=254 Identities=30% Similarity=0.443 Sum_probs=227.1
Q ss_pred cccEEEeecccccc--cCcccccCCCCCCEEeCCC-CccccccchhhcCCCCCcEeeccCCcccccCChhhhCCCCCCEE
Q 037951 346 QLQILVLGTNQLYG--SIPSGIGNLVNLYSLQTEE-NQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEI 422 (627)
Q Consensus 346 ~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~-n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L 422 (627)
+++.|+++++.+.+ .+|..++++++|++|++++ |.+++.+|..++.+++|++|++++|++.+..+..+..+.+|+.+
T Consensus 51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l 130 (313)
T d1ogqa_ 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL 130 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred EEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhccc
Confidence 47777777777765 4678888899999999986 68888889889999999999999999998888888889999999
Q ss_pred EccCCccccccChhhcCCCCCCEEECcCCcCcccCCccccccccCccEEEccCCccccCCCccccCCCCCCEEEccCCcc
Q 037951 423 FLGDNNLSGVIPSSLGNLERLAILEMFANELSGTIPGDIFNISSLSVSLDLAENHFVGSIPPRIGNLKALRCFDVSNNDL 502 (627)
Q Consensus 423 ~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~ll~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l 502 (627)
++++|.+.+.+|..+..++.++.+++++|.+.+.+|..+..+..+.+.+++++|++.+..+..+.++.. ..++++++..
T Consensus 131 ~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~-~~l~l~~~~~ 209 (313)
T d1ogqa_ 131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNL-AFVDLSRNML 209 (313)
T ss_dssp ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCC-SEEECCSSEE
T ss_pred ccccccccccCchhhccCcccceeecccccccccccccccccccccccccccccccccccccccccccc-cccccccccc
Confidence 999999888889999999999999999999999999988888888788999999999988888887755 4799999999
Q ss_pred cccCCccccCCCCCCEEECCCCcccccCChhccCCCCCCEEECCCCcCccccchhcccCc-CCeeeCcCCcccccCCCCC
Q 037951 503 SGEIPSELGLCSSLEEIYLAENFFNGFIPSFFRTSRGIRKVDLSRNNFFGQIPIFLEALS-LEYLNLSFNDFEGRLPTRG 581 (627)
Q Consensus 503 ~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~~~-L~~L~ls~n~l~~~~p~~~ 581 (627)
.+.+|..+..+++++.+++++|.+++.+| .+..+++|+.|++++|++++.+|..+..++ |++|++++|+++|.+|..+
T Consensus 210 ~~~~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~~ 288 (313)
T d1ogqa_ 210 EGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGG 288 (313)
T ss_dssp EECCGGGCCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCST
T ss_pred ccccccccccccccccccccccccccccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCCcc
Confidence 98999999999999999999999987765 578899999999999999999999999988 9999999999999999888
Q ss_pred ccCCCCccccccCCCCcccC
Q 037951 582 IFANASAISVGGCNRLCGGI 601 (627)
Q Consensus 582 ~~~~l~~l~~~~n~~l~~~~ 601 (627)
.+++|+.+++.||+.+||.+
T Consensus 289 ~L~~L~~l~l~~N~~l~g~p 308 (313)
T d1ogqa_ 289 NLQRFDVSAYANNKCLCGSP 308 (313)
T ss_dssp TGGGSCGGGTCSSSEEESTT
T ss_pred cCCCCCHHHhCCCccccCCC
Confidence 88999999999999999973
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=99.95 E-value=8.8e-26 Score=229.06 Aligned_cols=164 Identities=26% Similarity=0.418 Sum_probs=102.2
Q ss_pred cccEEEeecccccccCcccccCCCCCCEEeCCCCccccccchhhcCCCCCcEeeccCCcccccCChhhhCCCCCCEEEcc
Q 037951 346 QLQILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLG 425 (627)
Q Consensus 346 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~ 425 (627)
+|++|++++|.+++ + ..+..+++|+.+++++|.+++.. .+..+++|+.|+++++++.+.. .+..++.++.+++.
T Consensus 220 ~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~l~~n~l~~~~--~~~~~~~L~~L~l~~~~l~~~~--~~~~~~~l~~l~~~ 293 (384)
T d2omza2 220 NLDELSLNGNQLKD-I-GTLASLTNLTDLDLANNQISNLA--PLSGLTKLTELKLGANQISNIS--PLAGLTALTNLELN 293 (384)
T ss_dssp TCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECC
T ss_pred CCCEEECCCCCCCC-c-chhhcccccchhccccCccCCCC--cccccccCCEeeccCcccCCCC--cccccccccccccc
Confidence 45555555555542 1 23455566666666666665332 2555666666666666665322 25556666666666
Q ss_pred CCccccccChhhcCCCCCCEEECcCCcCcccCCccccccccCccEEEccCCccccCCCccccCCCCCCEEEccCCccccc
Q 037951 426 DNNLSGVIPSSLGNLERLAILEMFANELSGTIPGDIFNISSLSVSLDLAENHFVGSIPPRIGNLKALRCFDVSNNDLSGE 505 (627)
Q Consensus 426 ~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~ll~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ 505 (627)
+|.+.+. ..+..+++++.|++++|++.+. + .+..++++ ++|++++|++++ ++ .+.++++|++|++++|++++.
T Consensus 294 ~n~l~~~--~~~~~~~~l~~L~ls~n~l~~l-~-~l~~l~~L-~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~l 366 (384)
T d2omza2 294 ENQLEDI--SPISNLKNLTYLTLYFNNISDI-S-PVSSLTKL-QRLFFANNKVSD-VS-SLANLTNINWLSAGHNQISDL 366 (384)
T ss_dssp SSCCSCC--GGGGGCTTCSEEECCSSCCSCC-G-GGGGCTTC-CEEECCSSCCCC-CG-GGGGCTTCCEEECCSSCCCBC
T ss_pred ccccccc--cccchhcccCeEECCCCCCCCC-c-ccccCCCC-CEEECCCCCCCC-Ch-hHcCCCCCCEEECCCCcCCCC
Confidence 6666532 2356666677777777666532 2 25556666 677777776653 22 477788888888888888744
Q ss_pred CCccccCCCCCCEEECCCC
Q 037951 506 IPSELGLCSSLEEIYLAEN 524 (627)
Q Consensus 506 ~~~~l~~l~~L~~L~L~~n 524 (627)
.| ++++++|+.|+|++|
T Consensus 367 ~~--l~~l~~L~~L~L~~N 383 (384)
T d2omza2 367 TP--LANLTRITQLGLNDQ 383 (384)
T ss_dssp GG--GTTCTTCSEEECCCE
T ss_pred hh--hccCCCCCEeeCCCC
Confidence 33 788888888888887
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=99.95 E-value=7.8e-26 Score=229.46 Aligned_cols=356 Identities=24% Similarity=0.285 Sum_probs=188.4
Q ss_pred eCCCCcCcccCCccccCCCCCCEEEccCccccccCCccccCCCCCCeeeCCCCCCCCCCCCCCCCCCCCCEEECCCCCCC
Q 037951 103 LLSDNSLVGKIPANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTGGIPPFLGNLTSLEVVSLAGNPFG 182 (627)
Q Consensus 103 ~L~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~ 182 (627)
.++.+.+++.+. ...+.+|++|+++++.++. + +.+..+++|++|++++|++++. + .++++++|++|++++|.+.
T Consensus 28 ~l~~~~~~~~~~--~~~l~~l~~L~l~~~~I~~-l-~gl~~L~nL~~L~Ls~N~l~~l-~-~l~~L~~L~~L~L~~n~i~ 101 (384)
T d2omza2 28 VLGKTNVTDTVS--QTDLDQVTTLQADRLGIKS-I-DGVEYLNNLTQINFSNNQLTDI-T-PLKNLTKLVDILMNNNQIA 101 (384)
T ss_dssp HTTCSSTTSEEC--HHHHTTCCEEECCSSCCCC-C-TTGGGCTTCCEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCC
T ss_pred HhCCCCCCCccC--HHHhCCCCEEECCCCCCCC-c-cccccCCCCCEEeCcCCcCCCC-c-cccCCcccccccccccccc
Confidence 455555554333 3456678888888887763 2 4677788888888888887743 3 2777788888888888777
Q ss_pred CCCCCccCCCCCccEEEeeCccccccCCccccCCCCCcEEEeecccCccCCChhhhhcCCCCceeccCCccccccCCccc
Q 037951 183 GNIPDSLGQLKELKTLGIGGNNLSGSIPPSIYNLSFLVIFSVSENQMHGSLPPSLGLYFPNLKLFQTNENFFSGSIPISL 262 (627)
Q Consensus 183 ~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l 262 (627)
+.. .+..+++|+.|+++++.+++. ........+.......+.+....+.. .
T Consensus 102 ~i~--~l~~l~~L~~L~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~-------------------------~ 152 (384)
T d2omza2 102 DIT--PLANLTNLTGLTLFNNQITDI--DPLKNLTNLNRLELSSNTISDISALS-------------------------G 152 (384)
T ss_dssp CCG--GGTTCTTCCEEECCSSCCCCC--GGGTTCTTCSEEEEEEEEECCCGGGT-------------------------T
T ss_pred ccc--ccccccccccccccccccccc--cccccccccccccccccccccccccc-------------------------c
Confidence 432 366777777777777666532 12233334444444444332111000 0
Q ss_pred cCCCCCcEeecccccccccCccCcCCCCCcCEEeccCccCCCCCCCCccccccCCCCCcccEEEccCcccccccchhHHh
Q 037951 263 SNASKLEYVEIASNSFFGKLSVNFGGMKNLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIAN 342 (627)
Q Consensus 263 ~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~ 342 (627)
.............. .. ..+.............+... .......
T Consensus 153 ~~~~~~~~~~~~~~-----~~------------------------------~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 195 (384)
T d2omza2 153 LTSLQQLSFGNQVT-----DL------------------------------KPLANLTTLERLDISSNKVS--DISVLAK 195 (384)
T ss_dssp CTTCSEEEEEESCC-----CC------------------------------GGGTTCTTCCEEECCSSCCC--CCGGGGG
T ss_pred cccccccccccccc-----hh------------------------------hhhccccccccccccccccc--ccccccc
Confidence 00000000000000 00 01111122222222222221 1122222
Q ss_pred ccccccEEEeecccccccCcccccCCCCCCEEeCCCCccccccchhhcCCCCCcEeeccCCcccccCChhhhCCCCCCEE
Q 037951 343 LSSQLQILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEI 422 (627)
Q Consensus 343 ~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L 422 (627)
+. +++.+++++|.+++..+ ...+++|+.|++++|.++. + ..+..+++|+.+++++|.+++.. .+..+++|++|
T Consensus 196 l~-~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~l~~n~l~~~~--~~~~~~~L~~L 268 (384)
T d2omza2 196 LT-NLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD-I-GTLASLTNLTDLDLANNQISNLA--PLSGLTKLTEL 268 (384)
T ss_dssp CT-TCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCCCG--GGTTCTTCSEE
T ss_pred cc-ccceeeccCCccCCCCc--ccccCCCCEEECCCCCCCC-c-chhhcccccchhccccCccCCCC--cccccccCCEe
Confidence 22 45566666665554333 3445677777777777663 2 24566777777777777766432 25666777777
Q ss_pred EccCCccccccChhhcCCCCCCEEECcCCcCcccCCccccccccCccEEEccCCccccCCCccccCCCCCCEEEccCCcc
Q 037951 423 FLGDNNLSGVIPSSLGNLERLAILEMFANELSGTIPGDIFNISSLSVSLDLAENHFVGSIPPRIGNLKALRCFDVSNNDL 502 (627)
Q Consensus 423 ~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~ll~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l 502 (627)
+++++++++.. .+..++.++.+.+..|.+.+ ...+..+..+ +.|++++|++.+.. .+..+++|++|++++|++
T Consensus 269 ~l~~~~l~~~~--~~~~~~~l~~l~~~~n~l~~--~~~~~~~~~l-~~L~ls~n~l~~l~--~l~~l~~L~~L~L~~n~l 341 (384)
T d2omza2 269 KLGANQISNIS--PLAGLTALTNLELNENQLED--ISPISNLKNL-TYLTLYFNNISDIS--PVSSLTKLQRLFFANNKV 341 (384)
T ss_dssp ECCSSCCCCCG--GGTTCTTCSEEECCSSCCSC--CGGGGGCTTC-SEEECCSSCCSCCG--GGGGCTTCCEEECCSSCC
T ss_pred eccCcccCCCC--cccccccccccccccccccc--ccccchhccc-CeEECCCCCCCCCc--ccccCCCCCEEECCCCCC
Confidence 77777766432 35566666677666666652 2234444455 55666666555432 245555666666666655
Q ss_pred cccCCccccCCCCCCEEECCCCcccccCChhccCCCCCCEEECCCC
Q 037951 503 SGEIPSELGLCSSLEEIYLAENFFNGFIPSFFRTSRGIRKVDLSRN 548 (627)
Q Consensus 503 ~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~ls~n 548 (627)
+ .++ .++.+++|++|++++|++++..| +.++++|+.|++++|
T Consensus 342 ~-~l~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~N 383 (384)
T d2omza2 342 S-DVS-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383 (384)
T ss_dssp C-CCG-GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred C-CCh-hHcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCC
Confidence 4 232 35555666666666665554433 555556666665554
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.92 E-value=7e-24 Score=207.34 Aligned_cols=274 Identities=22% Similarity=0.265 Sum_probs=198.5
Q ss_pred CCcccceeecCCCCcceecccccCCCCCCCEEECCCCCCcccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEE
Q 037951 47 CEWEGITCDLRSKALSGLLSPQIGNLSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLTVL 126 (627)
Q Consensus 47 c~~~~~~c~l~~~~l~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L 126 (627)
|.|..+.| ++++++.+ |..+. +++++|++++|+++...+.+|.++++|++|++++|.+....|..|.++++|++|
T Consensus 10 c~~~~~~C--~~~~L~~l-P~~l~--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L 84 (305)
T d1xkua_ 10 CHLRVVQC--SDLGLEKV-PKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERL 84 (305)
T ss_dssp EETTEEEC--TTSCCCSC-CCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEE
T ss_pred ecCCEEEe--cCCCCCcc-CCCCC--CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEe
Confidence 66777655 55566643 55553 689999999999986555689999999999999999997778889999999999
Q ss_pred EccCccccccCCccccCCCCCCeeeCCCCCCCCCCCCCCCCCCCCCEEECCCCCCC--CCCCCccCCCCCccEEEeeCcc
Q 037951 127 VLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTGGIPPFLGNLTSLEVVSLAGNPFG--GNIPDSLGQLKELKTLGIGGNN 204 (627)
Q Consensus 127 ~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~--~~~~~~l~~l~~L~~L~l~~n~ 204 (627)
++++|+++ .+|..+ ...++.|++.+|.+.+..+..+.....++.++...+... ...+..+..+++|+.+++++|.
T Consensus 85 ~l~~n~l~-~l~~~~--~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~ 161 (305)
T d1xkua_ 85 YLSKNQLK-ELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN 161 (305)
T ss_dssp ECCSSCCS-BCCSSC--CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC
T ss_pred cccCCccC-cCccch--hhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCC
Confidence 99999988 455433 457888999888888655556677778888888877654 2344567778888888888888
Q ss_pred ccccCCccccCCCCCcEEEeecccCccCCChhhhhcCCCCceeccCCccccccCCccccCCCCCcEeecccccccccCcc
Q 037951 205 LSGSIPPSIYNLSFLVIFSVSENQMHGSLPPSLGLYFPNLKLFQTNENFFSGSIPISLSNASKLEYVEIASNSFFGKLSV 284 (627)
Q Consensus 205 ~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 284 (627)
+. .++..+ +++++.|++++|...+..+..+.. ++.+++|++++|.+++..+.++..+++|++|++++|.++.. |.
T Consensus 162 l~-~l~~~~--~~~L~~L~l~~n~~~~~~~~~~~~-~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~~l-p~ 236 (305)
T d1xkua_ 162 IT-TIPQGL--PPSLTELHLDGNKITKVDAASLKG-LNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKV-PG 236 (305)
T ss_dssp CC-SCCSSC--CTTCSEEECTTSCCCEECTGGGTT-CTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSC-CT
T ss_pred cc-ccCccc--CCccCEEECCCCcCCCCChhHhhc-cccccccccccccccccccccccccccceeeeccccccccc-cc
Confidence 76 444433 567888888888777665555443 67777777777777777677777777777777777777543 55
Q ss_pred CcCCCCCcCEEeccCccCCCCCCCCccccccCCCCCcccEEEccCcccc
Q 037951 285 NFGGMKNLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFR 333 (627)
Q Consensus 285 ~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~ 333 (627)
.+..+++|++|++++|+++.++...+..........+|+.|++++|.+.
T Consensus 237 ~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~ 285 (305)
T d1xkua_ 237 GLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 285 (305)
T ss_dssp TTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred ccccccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcCc
Confidence 6777777777777777777765543333344555566666666666553
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.91 E-value=6.3e-23 Score=200.49 Aligned_cols=243 Identities=21% Similarity=0.268 Sum_probs=169.7
Q ss_pred CCCEEECCCCCCcccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEEccCccccccCCccccCCCCCCeeeCC
Q 037951 74 FLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALP 153 (627)
Q Consensus 74 ~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~ 153 (627)
..+++|-++.+++ .+|..+. +++++|+|++|+++...+.+|.++++|++|++++|.+....|.+|.++++|++|+++
T Consensus 11 ~~~~~~C~~~~L~-~lP~~l~--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~ 87 (305)
T d1xkua_ 11 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 87 (305)
T ss_dssp ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred cCCEEEecCCCCC-ccCCCCC--CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEeccc
Confidence 4577888888887 6777764 689999999999996555679999999999999999997778889999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCccCCCCCccEEEeeCcccc--ccCCccccCCCCCcEEEeecccCcc
Q 037951 154 MNNLTGGIPPFLGNLTSLEVVSLAGNPFGGNIPDSLGQLKELKTLGIGGNNLS--GSIPPSIYNLSFLVIFSVSENQMHG 231 (627)
Q Consensus 154 ~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~--~~~~~~l~~l~~L~~L~l~~n~l~~ 231 (627)
+|+++. +|..+ ...++.|++.+|.+.+..+..+.....++.++...+... ...+..+..+++|+.+++++|.+.
T Consensus 88 ~n~l~~-l~~~~--~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~- 163 (305)
T d1xkua_ 88 KNQLKE-LPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT- 163 (305)
T ss_dssp SSCCSB-CCSSC--CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-
T ss_pred CCccCc-Cccch--hhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCcc-
Confidence 999884 45433 357889999999998766666777788888888777543 234556777788888888888765
Q ss_pred CCChhhhhcCCCCceeccCCccccccCCccccCCCCCcEeecccccccccCccCcCCCCCcCEEeccCccCCCCCCCCcc
Q 037951 232 SLPPSLGLYFPNLKLFQTNENFFSGSIPISLSNASKLEYVEIASNSFFGKLSVNFGGMKNLSYLILEYNNLGSGESDEMG 311 (627)
Q Consensus 232 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~ 311 (627)
.+|... +++++.|+++++...+..+..+..++.++.|++++|.+.+..+..+.++++|++|++++|.++.+
T Consensus 164 ~l~~~~---~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~~l------ 234 (305)
T d1xkua_ 164 TIPQGL---PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKV------ 234 (305)
T ss_dssp SCCSSC---CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSC------
T ss_pred ccCccc---CCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeeccccccccc------
Confidence 333332 45566666666665555555555555566666665555555555555555555555555555432
Q ss_pred ccccCCCCCcccEEEccCcccc
Q 037951 312 FMNSLANCSKLQVLSLGGNQFR 333 (627)
Q Consensus 312 ~~~~l~~~~~L~~L~l~~n~~~ 333 (627)
+.++..+++|++|++++|+++
T Consensus 235 -p~~l~~l~~L~~L~Ls~N~i~ 255 (305)
T d1xkua_ 235 -PGGLADHKYIQVVYLHNNNIS 255 (305)
T ss_dssp -CTTTTTCSSCCEEECCSSCCC
T ss_pred -ccccccccCCCEEECCCCccC
Confidence 223444455555555555444
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=9e-24 Score=204.06 Aligned_cols=248 Identities=19% Similarity=0.188 Sum_probs=171.8
Q ss_pred EEccCcccccccchhHHhccccccEEEeecccccccCcccccCCCCCCEEeCCCCccccccchhhcCCCCCcEeecc-CC
Q 037951 325 LSLGGNQFRGALPHSIANLSSQLQILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFG-GN 403 (627)
Q Consensus 325 L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~-~n 403 (627)
++.+++.++ .+|..+ ++++++|+|++|++++..+..|.++++|+.|++++|++....+..+..++.++.++.. .+
T Consensus 16 v~c~~~~L~-~iP~~i---p~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~ 91 (284)
T d1ozna_ 16 TSCPQQGLQ-AVPVGI---PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91 (284)
T ss_dssp EECCSSCCS-SCCTTC---CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT
T ss_pred EEcCCCCCC-ccCCCC---CCCCCEEECcCCcCCCCCHHHhhcccccccccccccccccccccccccccccccccccccc
Confidence 344444444 444432 2367777777777776555667777778888887777776666667777777777654 44
Q ss_pred cccccCChhhhCCCCCCEEEccCCccccccChhhcCCCCCCEEECcCCcCcccCCccccccccCccEEEccCCccccCCC
Q 037951 404 HFSGEIPSTLGNLSSLYEIFLGDNNLSGVIPSSLGNLERLAILEMFANELSGTIPGDIFNISSLSVSLDLAENHFVGSIP 483 (627)
Q Consensus 404 ~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~ll~~L~l~~n~l~~~~~ 483 (627)
.+....+..|.++++|++|++++|.+....+..+...++|+.+++++|.+.+..+..+.....+ ++|++++|++.+..+
T Consensus 92 ~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L-~~L~l~~N~l~~l~~ 170 (284)
T d1ozna_ 92 QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNL-THLFLHGNRISSVPE 170 (284)
T ss_dssp TCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC-CEEECCSSCCCEECT
T ss_pred ccccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccch-hhcccccCcccccch
Confidence 5555556667777888888888887776666667777778888888887774334445556666 777888887776667
Q ss_pred ccccCCCCCCEEEccCCcccccCCccccCCCCCCEEECCCCcccccCChhccCCCCCCEEECCCCcCccccchhcccCc-
Q 037951 484 PRIGNLKALRCFDVSNNDLSGEIPSELGLCSSLEEIYLAENFFNGFIPSFFRTSRGIRKVDLSRNNFFGQIPIFLEALS- 562 (627)
Q Consensus 484 ~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~~~- 562 (627)
.+|..+++|+++++++|++++..|..|..+++|++|++++|.+.+..+..|..+++|+.|++++|++...-+. .+...
T Consensus 171 ~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~~-~~l~~~ 249 (284)
T d1ozna_ 171 RAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA-RPLWAW 249 (284)
T ss_dssp TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGG-HHHHHH
T ss_pred hhhccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCCCccc-hHHHHH
Confidence 7777888888888888888877777888888888888888888877777788888888888888887654331 11122
Q ss_pred CCeeeCcCCcccccCC
Q 037951 563 LEYLNLSFNDFEGRLP 578 (627)
Q Consensus 563 L~~L~ls~n~l~~~~p 578 (627)
++.+....+.+....|
T Consensus 250 l~~~~~~~~~~~C~~p 265 (284)
T d1ozna_ 250 LQKFRGSSSEVPCSLP 265 (284)
T ss_dssp HHHCCSEECCCBEEES
T ss_pred HHhCcCCCCceEeCCc
Confidence 5555556666655555
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=1e-23 Score=203.71 Aligned_cols=253 Identities=20% Similarity=0.180 Sum_probs=211.5
Q ss_pred cEEEeecccccccCcccccCCCCCCEEeCCCCccccccchhhcCCCCCcEeeccCCcccccCChhhhCCCCCCEEEcc-C
Q 037951 348 QILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLG-D 426 (627)
Q Consensus 348 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~-~ 426 (627)
..++.+++.++ .+|..+. +.+++|+|++|+++...+.+|.++++|+.|++++|.+....+..+..++.++.++.. .
T Consensus 14 ~~v~c~~~~L~-~iP~~ip--~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~ 90 (284)
T d1ozna_ 14 VTTSCPQQGLQ-AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (284)
T ss_dssp CEEECCSSCCS-SCCTTCC--TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCCCCCC-ccCCCCC--CCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccc
Confidence 34566777776 5666553 678999999999997767789999999999999999998888888889999999876 4
Q ss_pred CccccccChhhcCCCCCCEEECcCCcCcccCCccccccccCccEEEccCCccccCCCccccCCCCCCEEEccCCcccccC
Q 037951 427 NNLSGVIPSSLGNLERLAILEMFANELSGTIPGDIFNISSLSVSLDLAENHFVGSIPPRIGNLKALRCFDVSNNDLSGEI 506 (627)
Q Consensus 427 n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~ll~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~ 506 (627)
+.++...+..+.++++|++|++++|.+....+..+.....+ +.+++++|++.+..+..|..+++|++|++++|++++..
T Consensus 91 ~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L-~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~ 169 (284)
T d1ozna_ 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAAL-QYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVP 169 (284)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC-CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred cccccccchhhcccccCCEEecCCcccccccccccchhccc-chhhhccccccccChhHhccccchhhcccccCcccccc
Confidence 55776668889999999999999999985556666677777 89999999999777788999999999999999999777
Q ss_pred CccccCCCCCCEEECCCCcccccCChhccCCCCCCEEECCCCcCccccchhcccCc-CCeeeCcCCcccccCCCCCccCC
Q 037951 507 PSELGLCSSLEEIYLAENFFNGFIPSFFRTSRGIRKVDLSRNNFFGQIPIFLEALS-LEYLNLSFNDFEGRLPTRGIFAN 585 (627)
Q Consensus 507 ~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~~~-L~~L~ls~n~l~~~~p~~~~~~~ 585 (627)
+..|..+++|+++++++|++++..|..|..+++|+.||+++|.+.+..|..++... |++|++++|++...-+.......
T Consensus 170 ~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~~~~l~~~ 249 (284)
T d1ozna_ 170 ERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAW 249 (284)
T ss_dssp TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHHHHHH
T ss_pred hhhhccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCCCccchHHHHH
Confidence 88899999999999999999999999999999999999999999988888888888 99999999999876553333334
Q ss_pred CCccccccCCCCcccCCCC
Q 037951 586 ASAISVGGCNRLCGGIHEL 604 (627)
Q Consensus 586 l~~l~~~~n~~l~~~~~~l 604 (627)
++......+...|..+..|
T Consensus 250 l~~~~~~~~~~~C~~p~~l 268 (284)
T d1ozna_ 250 LQKFRGSSSEVPCSLPQRL 268 (284)
T ss_dssp HHHCCSEECCCBEEESGGG
T ss_pred HHhCcCCCCceEeCCchHH
Confidence 5555556666666554443
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.87 E-value=3.5e-21 Score=183.49 Aligned_cols=197 Identities=20% Similarity=0.196 Sum_probs=111.9
Q ss_pred cccEEEeecccccccCcccccCCCCCCEEeCCCCccccccchhhcCCCCCcEeeccCCcccccCChhhhCCCCCCEEEcc
Q 037951 346 QLQILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLG 425 (627)
Q Consensus 346 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~ 425 (627)
.+.+++.+++.++ .+|..+. ++++.|++++|++++..+..|..+++|+.|++++|+++. ++ .+..+++|++|+++
T Consensus 11 ~~~~v~C~~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~Ls 85 (266)
T d1p9ag_ 11 SHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQ-VDGTLPVLGTLDLS 85 (266)
T ss_dssp TCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EE-CCSCCTTCCEEECC
T ss_pred CCeEEEccCCCCC-eeCcCcC--cCCCEEECcCCcCCCcCHHHhhccccccccccccccccc-cc-cccccccccccccc
Confidence 3445566666666 3454432 456667777666665555566666666666666666652 22 23456666666666
Q ss_pred CCccccccChhhcCCCCCCEEECcCCcCcccCCccccccccCccEEEccCCccccCCCccccCCCCCCEEEccCCccccc
Q 037951 426 DNNLSGVIPSSLGNLERLAILEMFANELSGTIPGDIFNISSLSVSLDLAENHFVGSIPPRIGNLKALRCFDVSNNDLSGE 505 (627)
Q Consensus 426 ~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~ll~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ 505 (627)
+|+++. .+..+..+++|+.|++++|.+.+..+..+..+..+ +++++++|.+.+..+..+..+++++.+++++|++++.
T Consensus 86 ~N~l~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l-~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~ 163 (266)
T d1p9ag_ 86 HNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGEL-QELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTEL 163 (266)
T ss_dssp SSCCSS-CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTC-CEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCC
T ss_pred cccccc-cccccccccccccccccccccceeecccccccccc-ccccccccccceeccccccccccchhccccccccccc
Confidence 666653 34455666666666666666554333344444444 5556665555544444455555555666666655544
Q ss_pred CCccccCCCCCCEEECCCCcccccCChhccCCCCCCEEECCCCcC
Q 037951 506 IPSELGLCSSLEEIYLAENFFNGFIPSFFRTSRGIRKVDLSRNNF 550 (627)
Q Consensus 506 ~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~ls~n~l 550 (627)
.+..|..+++|++|+|++|+++ .+|+.+..+++|+.|++++|++
T Consensus 164 ~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~ 207 (266)
T d1p9ag_ 164 PAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207 (266)
T ss_dssp CTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCB
T ss_pred CccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCC
Confidence 4445555555556666555555 3444455555555555555554
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.86 E-value=3.9e-21 Score=183.15 Aligned_cols=201 Identities=19% Similarity=0.229 Sum_probs=166.0
Q ss_pred cCCCCCCEEeCCCCccccccchhhcCCCCCcEeeccCCcccccCChhhhCCCCCCEEEccCCccccccChhhcCCCCCCE
Q 037951 366 GNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLGDNNLSGVIPSSLGNLERLAI 445 (627)
Q Consensus 366 ~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~ 445 (627)
.....+.+++.+++.++ .+|..+. ++++.|+|++|.+++..+..|.++++|++|++++|.++.. + .+..+++|+.
T Consensus 7 ~~~~~~~~v~C~~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l-~-~~~~l~~L~~ 81 (266)
T d1p9ag_ 7 SKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-Q-VDGTLPVLGT 81 (266)
T ss_dssp ECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-E-CCSCCTTCCE
T ss_pred cccCCCeEEEccCCCCC-eeCcCcC--cCCCEEECcCCcCCCcCHHHhhcccccccccccccccccc-c-cccccccccc
Confidence 34566777889988888 5676553 5799999999999876667899999999999999999843 3 3567899999
Q ss_pred EECcCCcCcccCCccccccccCccEEEccCCccccCCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEECCCCc
Q 037951 446 LEMFANELSGTIPGDIFNISSLSVSLDLAENHFVGSIPPRIGNLKALRCFDVSNNDLSGEIPSELGLCSSLEEIYLAENF 525 (627)
Q Consensus 446 L~l~~n~l~~~~~~~~~~~~~ll~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~ 525 (627)
|++++|++. ..+..+..++.+ ++|++++|.+.+..+..+..+.++++|++++|.++...+..+..++.|+.+++++|+
T Consensus 82 L~Ls~N~l~-~~~~~~~~l~~L-~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~ 159 (266)
T d1p9ag_ 82 LDLSHNQLQ-SLPLLGQTLPAL-TVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN 159 (266)
T ss_dssp EECCSSCCS-SCCCCTTTCTTC-CEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred ccccccccc-cccccccccccc-ccccccccccceeeccccccccccccccccccccceeccccccccccchhccccccc
Confidence 999999987 556677778888 899999998887777778888999999999999886666677888899999999999
Q ss_pred ccccCChhccCCCCCCEEECCCCcCccccchhcccCc-CCeeeCcCCccc
Q 037951 526 FNGFIPSFFRTSRGIRKVDLSRNNFFGQIPIFLEALS-LEYLNLSFNDFE 574 (627)
Q Consensus 526 i~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~~~-L~~L~ls~n~l~ 574 (627)
+++..+..|..+++|++|++++|.+. .+|..+.... |+.|++++|++.
T Consensus 160 l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~ 208 (266)
T d1p9ag_ 160 LTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208 (266)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred ccccCccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCCC
Confidence 98888888888999999999999988 7776666666 889999988875
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=99.82 E-value=2.5e-17 Score=163.90 Aligned_cols=138 Identities=28% Similarity=0.373 Sum_probs=100.8
Q ss_pred CCCCEEECCCCCCcccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEEccCccccccCCccccCCCCCCeeeC
Q 037951 73 SFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLAL 152 (627)
Q Consensus 73 ~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l 152 (627)
.++++|||++++++ .+|+. .++|++|++++|+++ .+|+.+ .+|++|++++|+++ .++.. .+.|++|++
T Consensus 38 ~~l~~LdLs~~~L~-~lp~~---~~~L~~L~Ls~N~l~-~lp~~~---~~L~~L~l~~n~l~-~l~~l---p~~L~~L~L 105 (353)
T d1jl5a_ 38 RQAHELELNNLGLS-SLPEL---PPHLESLVASCNSLT-ELPELP---QSLKSLLVDNNNLK-ALSDL---PPLLEYLGV 105 (353)
T ss_dssp HTCSEEECTTSCCS-CCCSC---CTTCSEEECCSSCCS-SCCCCC---TTCCEEECCSSCCS-CCCSC---CTTCCEEEC
T ss_pred cCCCEEEeCCCCCC-CCCCC---CCCCCEEECCCCCCc-ccccch---hhhhhhhhhhcccc-hhhhh---ccccccccc
Confidence 36889999999987 57753 468999999999998 667654 57899999999887 33321 246999999
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCccCCCCCccEEEeeCccccccCCccccCCCCCcEEEeecccCc
Q 037951 153 PMNNLTGGIPPFLGNLTSLEVVSLAGNPFGGNIPDSLGQLKELKTLGIGGNNLSGSIPPSIYNLSFLVIFSVSENQMH 230 (627)
Q Consensus 153 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~ 230 (627)
++|.+. .+|. ++.+++|++|+++++.+... +. ....+..+.+..+... ....+..++.++.+.+..+...
T Consensus 106 ~~n~l~-~lp~-~~~l~~L~~L~l~~~~~~~~-~~---~~~~l~~l~~~~~~~~--~~~~l~~l~~l~~L~l~~n~~~ 175 (353)
T d1jl5a_ 106 SNNQLE-KLPE-LQNSSFLKIIDVDNNSLKKL-PD---LPPSLEFIAAGNNQLE--ELPELQNLPFLTAIYADNNSLK 175 (353)
T ss_dssp CSSCCS-SCCC-CTTCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCS--SCCCCTTCTTCCEEECCSSCCS
T ss_pred cccccc-cccc-hhhhccceeecccccccccc-cc---ccccccchhhcccccc--ccccccccccceeccccccccc
Confidence 999887 4554 67889999999998888733 22 2356667777665543 3455677788888888877665
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.78 E-value=8.3e-21 Score=196.77 Aligned_cols=379 Identities=16% Similarity=0.135 Sum_probs=171.4
Q ss_pred CCCEEECCCCCCCCCC-CCccCCCCCccEEEeeCccccc----cCCccccCCCCCcEEEeecccCccCCChhhhh----c
Q 037951 170 SLEVVSLAGNPFGGNI-PDSLGQLKELKTLGIGGNNLSG----SIPPSIYNLSFLVIFSVSENQMHGSLPPSLGL----Y 240 (627)
Q Consensus 170 ~L~~L~L~~n~~~~~~-~~~l~~l~~L~~L~l~~n~~~~----~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~----~ 240 (627)
+|++||++.+++++.. .+.+..++++++|+|++|.++. .++..+..+++|+.|++++|.++......+.. .
T Consensus 3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~ 82 (460)
T d1z7xw1 3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP 82 (460)
T ss_dssp EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcC
Confidence 3556666666665321 2223445666666666666552 22344556666666666666654322122221 1
Q ss_pred CCCCceeccCCcccccc----CCccccCCCCCcEeecccccccccCccCc-----CCCCCcCEEeccCccCCCCCCCCcc
Q 037951 241 FPNLKLFQTNENFFSGS----IPISLSNASKLEYVEIASNSFFGKLSVNF-----GGMKNLSYLILEYNNLGSGESDEMG 311 (627)
Q Consensus 241 ~~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~~~~~~~~~~~l-----~~l~~L~~L~l~~n~l~~~~~~~~~ 311 (627)
..+|++|++++|.+++. ++..+..+++|++|++++|.+.......+ ...............+..... ..
T Consensus 83 ~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~--~~ 160 (460)
T d1z7xw1 83 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASC--EP 160 (460)
T ss_dssp TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGH--HH
T ss_pred CCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccchhhh--cc
Confidence 23566666666655432 23344556666666666666543211111 111222233332222211000 01
Q ss_pred ccccCCCCCcccEEEccCcccccccc----hhHHhccccccEEEeeccccccc----CcccccCCCCCCEEeCCCCcccc
Q 037951 312 FMNSLANCSKLQVLSLGGNQFRGALP----HSIANLSSQLQILVLGTNQLYGS----IPSGIGNLVNLYSLQTEENQFTG 383 (627)
Q Consensus 312 ~~~~l~~~~~L~~L~l~~n~~~~~~~----~~~~~~~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~~~~ 383 (627)
....+.....++.++++++....... ..+.........+++..+.+... ....+...+.++.+++.+|.+..
T Consensus 161 ~~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~~ 240 (460)
T d1z7xw1 161 LASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD 240 (460)
T ss_dssp HHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccchhhhcccccccccccccccchhhccccc
Confidence 11223334556666666655432211 11111122344455544433211 11122334455555555554321
Q ss_pred c-----cchhhcCCCCCcEeeccCCcccccC----ChhhhCCCCCCEEEccCCccccccChhh-----cCCCCCCEEECc
Q 037951 384 S-----IPKEMGKLLNLQGLDFGGNHFSGEI----PSTLGNLSSLYEIFLGDNNLSGVIPSSL-----GNLERLAILEMF 449 (627)
Q Consensus 384 ~-----~~~~~~~l~~L~~L~L~~n~~~~~~----~~~~~~~~~L~~L~l~~n~~~~~~~~~l-----~~l~~L~~L~l~ 449 (627)
. ..........++.+++++|.+.... ...+...+.++.+++++|.++......+ .....|+
T Consensus 241 ~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~----- 315 (460)
T d1z7xw1 241 VGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLE----- 315 (460)
T ss_dssp HHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCC-----
T ss_pred cccchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhccccccccccc-----
Confidence 1 1122233445555555555544221 1122334455555555555442211111 1123344
Q ss_pred CCcCcccCCccccccccCccEEEccCCccccCCC----ccccCCCCCCEEEccCCccccc----CCcccc-CCCCCCEEE
Q 037951 450 ANELSGTIPGDIFNISSLSVSLDLAENHFVGSIP----PRIGNLKALRCFDVSNNDLSGE----IPSELG-LCSSLEEIY 520 (627)
Q Consensus 450 ~n~l~~~~~~~~~~~~~ll~~L~l~~n~l~~~~~----~~l~~l~~L~~L~Ls~n~l~~~----~~~~l~-~l~~L~~L~ 520 (627)
.+++++|.+..... ..+...++|++|+|++|++++. +++.+. ..+.|++|+
T Consensus 316 --------------------~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~ 375 (460)
T d1z7xw1 316 --------------------SLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLW 375 (460)
T ss_dssp --------------------EEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEE
T ss_pred --------------------cccccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEE
Confidence 44455444432211 1223445677777777766532 222232 345677777
Q ss_pred CCCCccccc----CChhccCCCCCCEEECCCCcCcccc----chhcc-cCc-CCeeeCcCCcccc
Q 037951 521 LAENFFNGF----IPSFFRTSRGIRKVDLSRNNFFGQI----PIFLE-ALS-LEYLNLSFNDFEG 575 (627)
Q Consensus 521 L~~n~i~~~----~~~~l~~l~~L~~L~ls~n~l~~~~----p~~~~-~~~-L~~L~ls~n~l~~ 575 (627)
|++|.++.. +++.+..+++|++||+++|+++... ...+. +.. |+.|++++|.+..
T Consensus 376 Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~~ 440 (460)
T d1z7xw1 376 LADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSE 440 (460)
T ss_dssp CTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCH
T ss_pred CCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCCCH
Confidence 777776643 3444556677777777777765421 12222 222 7777777776654
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=99.77 E-value=3.7e-16 Score=155.27 Aligned_cols=115 Identities=27% Similarity=0.360 Sum_probs=83.0
Q ss_pred CCCCEEeCCCCcCcccCCccccCCCCCCEEEccCccccccCCccccCCCCCCeeeCCCCCCCCCCCCCCCCCCCCCEEEC
Q 037951 97 RRLETLLLSDNSLVGKIPANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTGGIPPFLGNLTSLEVVSL 176 (627)
Q Consensus 97 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 176 (627)
.++++|+|+++.++ .+|+. .++|++|++++|+++ .+|.. ..+|+.|++++|.++. ++. + .+.|++|++
T Consensus 38 ~~l~~LdLs~~~L~-~lp~~---~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~l~~n~l~~-l~~-l--p~~L~~L~L 105 (353)
T d1jl5a_ 38 RQAHELELNNLGLS-SLPEL---PPHLESLVASCNSLT-ELPEL---PQSLKSLLVDNNNLKA-LSD-L--PPLLEYLGV 105 (353)
T ss_dssp HTCSEEECTTSCCS-CCCSC---CTTCSEEECCSSCCS-SCCCC---CTTCCEEECCSSCCSC-CCS-C--CTTCCEEEC
T ss_pred cCCCEEEeCCCCCC-CCCCC---CCCCCEEECCCCCCc-ccccc---hhhhhhhhhhhcccch-hhh-h--ccccccccc
Confidence 47899999999998 57753 578999999999998 66755 4578999999998873 332 1 146899999
Q ss_pred CCCCCCCCCCCccCCCCCccEEEeeCccccccCCccccCCCCCcEEEeecccC
Q 037951 177 AGNPFGGNIPDSLGQLKELKTLGIGGNNLSGSIPPSIYNLSFLVIFSVSENQM 229 (627)
Q Consensus 177 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l 229 (627)
++|.+.. +|. ++.+++|++|+++++.+.. .+. ....+..+.+..+..
T Consensus 106 ~~n~l~~-lp~-~~~l~~L~~L~l~~~~~~~-~~~---~~~~l~~l~~~~~~~ 152 (353)
T d1jl5a_ 106 SNNQLEK-LPE-LQNSSFLKIIDVDNNSLKK-LPD---LPPSLEFIAAGNNQL 152 (353)
T ss_dssp CSSCCSS-CCC-CTTCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCC
T ss_pred ccccccc-ccc-hhhhccceeeccccccccc-ccc---ccccccchhhccccc
Confidence 9998884 453 5778899999998887763 222 234455555554433
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.77 E-value=3.5e-21 Score=199.67 Aligned_cols=109 Identities=21% Similarity=0.255 Sum_probs=74.8
Q ss_pred CCCEEECCCCCCccc-CCcccCCCCCCCEEeCCCCcCcc----cCCccccCCCCCCEEEccCccccccCC----cccc-C
Q 037951 74 FLREINLMNNTIQGE-IPLEFGRLRRLETLLLSDNSLVG----KIPANLSYCSRLTVLVLGNNKLVGSIP----FEFV-S 143 (627)
Q Consensus 74 ~L~~L~Ls~~~~~~~-~~~~~~~l~~L~~L~L~~n~i~~----~~~~~~~~l~~L~~L~ls~n~l~~~~~----~~l~-~ 143 (627)
+|++||++++++++. +...+..++++++|+|++|.++. .++..+..+++|++||+++|+++.... ..+. .
T Consensus 3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~ 82 (460)
T d1z7xw1 3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP 82 (460)
T ss_dssp EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcC
Confidence 578888888888753 23345667888888888888763 234556788888888888888763222 2222 2
Q ss_pred CCCCCeeeCCCCCCCCC----CCCCCCCCCCCCEEECCCCCCC
Q 037951 144 LYKLKQLALPMNNLTGG----IPPFLGNLTSLEVVSLAGNPFG 182 (627)
Q Consensus 144 l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~L~~n~~~ 182 (627)
..+|++|++++|.++.. ++..+..+++|++|++++|.++
T Consensus 83 ~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~ 125 (460)
T d1z7xw1 83 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLG 125 (460)
T ss_dssp TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCH
T ss_pred CCCCCEEECCCCCccccccccccchhhccccccccccccccch
Confidence 34688888888877642 2345667788888888888765
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=99.72 E-value=1.1e-16 Score=148.01 Aligned_cols=183 Identities=21% Similarity=0.310 Sum_probs=82.4
Q ss_pred cccEEEeecccccccCcccccCCCCCCEEeCCCCccccccchhhcCCCCCcEeeccCCcccccCChhhhCCCCCCEEEcc
Q 037951 346 QLQILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLG 425 (627)
Q Consensus 346 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~ 425 (627)
+|+.|++.+|.++. + ..+..+++|+.|++++|.+++.. .+..+++|+.+++++|.++. + ..+..+++|+.++++
T Consensus 42 ~L~~L~l~~~~i~~-l-~~l~~l~~L~~L~ls~n~i~~~~--~l~~l~~l~~l~~~~n~~~~-i-~~l~~l~~L~~l~l~ 115 (227)
T d1h6ua2 42 GITTLSAFGTGVTT-I-EGVQYLNNLIGLELKDNQITDLA--PLKNLTKITELELSGNPLKN-V-SAIAGLQSIKTLDLT 115 (227)
T ss_dssp TCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCCCG--GGTTCCSCCEEECCSCCCSC-C-GGGTTCTTCCEEECT
T ss_pred CcCEEECCCCCCCc-c-hhHhcCCCCcEeecCCceeeccc--cccccccccccccccccccc-c-ccccccccccccccc
Confidence 45555555554442 2 23444555555555555544322 14444555555555554441 1 123444555555554
Q ss_pred CCccccccChhhcCCCCCCEEECcCCcCcccCCccccccccCccEEEccCCccccCCCccccCCCCCCEEEccCCccccc
Q 037951 426 DNNLSGVIPSSLGNLERLAILEMFANELSGTIPGDIFNISSLSVSLDLAENHFVGSIPPRIGNLKALRCFDVSNNDLSGE 505 (627)
Q Consensus 426 ~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~ll~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ 505 (627)
++...+. ..+...+.++.+.+ +.+.+... ..+..+++|++|++++|.+.+.
T Consensus 116 ~~~~~~~--~~~~~~~~~~~l~~-------------------------~~~~~~~~--~~~~~~~~L~~L~l~~n~~~~~ 166 (227)
T d1h6ua2 116 STQITDV--TPLAGLSNLQVLYL-------------------------DLNQITNI--SPLAGLTNLQYLSIGNAQVSDL 166 (227)
T ss_dssp TSCCCCC--GGGTTCTTCCEEEC-------------------------CSSCCCCC--GGGGGCTTCCEEECCSSCCCCC
T ss_pred ccccccc--chhccccchhhhhc-------------------------hhhhhchh--hhhccccccccccccccccccc
Confidence 4444322 12333344444444 44444321 1234445555555555554421
Q ss_pred CCccccCCCCCCEEECCCCcccccCChhccCCCCCCEEECCCCcCccccchhcccCc-CCeeeCc
Q 037951 506 IPSELGLCSSLEEIYLAENFFNGFIPSFFRTSRGIRKVDLSRNNFFGQIPIFLEALS-LEYLNLS 569 (627)
Q Consensus 506 ~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~~~-L~~L~ls 569 (627)
..++++++|++|++++|++++. + .+.++++|+.|++++|++++ ++. +..++ |+.|+++
T Consensus 167 --~~l~~l~~L~~L~Ls~n~l~~l-~-~l~~l~~L~~L~Ls~N~lt~-i~~-l~~l~~L~~L~ls 225 (227)
T d1h6ua2 167 --TPLANLSKLTTLKADDNKISDI-S-PLASLPNLIEVHLKNNQISD-VSP-LANTSNLFIVTLT 225 (227)
T ss_dssp --GGGTTCTTCCEEECCSSCCCCC-G-GGGGCTTCCEEECTTSCCCB-CGG-GTTCTTCCEEEEE
T ss_pred --hhhcccccceecccCCCccCCC-h-hhcCCCCCCEEECcCCcCCC-Ccc-cccCCCCCEEEee
Confidence 1245555555555555555432 2 24555555555555555542 221 33334 5555554
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=99.72 E-value=5.3e-17 Score=150.27 Aligned_cols=187 Identities=19% Similarity=0.264 Sum_probs=120.3
Q ss_pred cCCCCCCEEeCCCCccccccchhhcCCCCCcEeeccCCcccccCChhhhCCCCCCEEEccCCccccccChhhcCCCCCCE
Q 037951 366 GNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLGDNNLSGVIPSSLGNLERLAI 445 (627)
Q Consensus 366 ~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~ 445 (627)
..+.+|+.|++.+|.++. + +.+..+++|+.|++++|.+++.. .+..+++++++++++|.++. + ..+..+++|
T Consensus 38 ~~l~~L~~L~l~~~~i~~-l-~~l~~l~~L~~L~ls~n~i~~~~--~l~~l~~l~~l~~~~n~~~~-i-~~l~~l~~L-- 109 (227)
T d1h6ua2 38 ADLDGITTLSAFGTGVTT-I-EGVQYLNNLIGLELKDNQITDLA--PLKNLTKITELELSGNPLKN-V-SAIAGLQSI-- 109 (227)
T ss_dssp HHHHTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCCCG--GGTTCCSCCEEECCSCCCSC-C-GGGTTCTTC--
T ss_pred HHcCCcCEEECCCCCCCc-c-hhHhcCCCCcEeecCCceeeccc--cccccccccccccccccccc-c-ccccccccc--
Confidence 344555555555555542 2 23445555555555555554322 14445555555555554442 1 123444444
Q ss_pred EECcCCcCcccCCccccccccCccEEEccCCccccCCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEECCCCc
Q 037951 446 LEMFANELSGTIPGDIFNISSLSVSLDLAENHFVGSIPPRIGNLKALRCFDVSNNDLSGEIPSELGLCSSLEEIYLAENF 525 (627)
Q Consensus 446 L~l~~n~l~~~~~~~~~~~~~ll~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~ 525 (627)
+.++++++...+. ..+...+.++.+.++++.+... ..+..+++|+.|++++|.
T Consensus 110 -----------------------~~l~l~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~n~ 162 (227)
T d1h6ua2 110 -----------------------KTLDLTSTQITDV--TPLAGLSNLQVLYLDLNQITNI--SPLAGLTNLQYLSIGNAQ 162 (227)
T ss_dssp -----------------------CEEECTTSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCCEEECCSSC
T ss_pred -----------------------ccccccccccccc--chhccccchhhhhchhhhhchh--hhhccccccccccccccc
Confidence 4555555544322 2355678889999999988633 347788999999999999
Q ss_pred ccccCChhccCCCCCCEEECCCCcCccccchhcccCc-CCeeeCcCCcccccCCCCCccCCCCccccc
Q 037951 526 FNGFIPSFFRTSRGIRKVDLSRNNFFGQIPIFLEALS-LEYLNLSFNDFEGRLPTRGIFANASAISVG 592 (627)
Q Consensus 526 i~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~~~-L~~L~ls~n~l~~~~p~~~~~~~l~~l~~~ 592 (627)
++... .+.++++|++|++++|++.+ ++. +..++ |++|++++|++++ +|....+++|+.++++
T Consensus 163 ~~~~~--~l~~l~~L~~L~Ls~n~l~~-l~~-l~~l~~L~~L~Ls~N~lt~-i~~l~~l~~L~~L~ls 225 (227)
T d1h6ua2 163 VSDLT--PLANLSKLTTLKADDNKISD-ISP-LASLPNLIEVHLKNNQISD-VSPLANTSNLFIVTLT 225 (227)
T ss_dssp CCCCG--GGTTCTTCCEEECCSSCCCC-CGG-GGGCTTCCEEECTTSCCCB-CGGGTTCTTCCEEEEE
T ss_pred cccch--hhcccccceecccCCCccCC-Chh-hcCCCCCCEEECcCCcCCC-CcccccCCCCCEEEee
Confidence 97543 48899999999999999884 554 55666 9999999999885 4444567788888775
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.70 E-value=1.1e-16 Score=149.88 Aligned_cols=216 Identities=18% Similarity=0.155 Sum_probs=108.9
Q ss_pred EEEeecccccccCcccccCCCCCCEEeCCCCccccccchhhcCCCCCcEeeccCCcccccC-ChhhhCCCCCCEEEccC-
Q 037951 349 ILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEI-PSTLGNLSSLYEIFLGD- 426 (627)
Q Consensus 349 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~-~~~~~~~~~L~~L~l~~- 426 (627)
.++.++..++ .+|..+. +++++|++++|.++...+.+|.++++|++|++++|.+...+ +..|..++.++++.+..
T Consensus 12 ~i~c~~~~l~-~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~ 88 (242)
T d1xwdc1 12 VFLCQESKVT-EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 88 (242)
T ss_dssp EEEEESCSCS-SCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECC
T ss_pred EEEEeCCCCC-CcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccccc
Confidence 4444444444 3333221 34555555555555333344555566666666666554332 23455556666665543
Q ss_pred CccccccChhhcCCCCCCEEECcCCcCcccCCcc-ccccccCccEEEccCCccccCCCccccCCC-CCCEEEccCCcccc
Q 037951 427 NNLSGVIPSSLGNLERLAILEMFANELSGTIPGD-IFNISSLSVSLDLAENHFVGSIPPRIGNLK-ALRCFDVSNNDLSG 504 (627)
Q Consensus 427 n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~-~~~~~~ll~~L~l~~n~l~~~~~~~l~~l~-~L~~L~Ls~n~l~~ 504 (627)
|.+....+..+..+++|+.+++++|.+....+.. +..+..+ ..+...++.+....+..+..++ .++.|++++|+++
T Consensus 89 n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l-~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~- 166 (242)
T d1xwdc1 89 NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKV-LLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ- 166 (242)
T ss_dssp TTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCE-EEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-
T ss_pred ccccccccccccccccccccccchhhhccccccccccccccc-ccccccccccccccccccccccccceeeeccccccc-
Confidence 3444445555566666666666666554221111 1122222 3344444444443344444433 5666777777776
Q ss_pred cCCccccCCCCCCEE-ECCCCcccccCChhccCCCCCCEEECCCCcCccccchhcccCc-CCeeeCc
Q 037951 505 EIPSELGLCSSLEEI-YLAENFFNGFIPSFFRTSRGIRKVDLSRNNFFGQIPIFLEALS-LEYLNLS 569 (627)
Q Consensus 505 ~~~~~l~~l~~L~~L-~L~~n~i~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~~~-L~~L~ls 569 (627)
.++......++++.+ ++++|.++...+..|.++++|++|++++|++....+..+..+. |+.+++.
T Consensus 167 ~i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~~ 233 (242)
T d1xwdc1 167 EIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTY 233 (242)
T ss_dssp EECTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSEE
T ss_pred ccccccccchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcCC
Confidence 333333333444433 4566666655555567777777777777777643334445444 5555443
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.69 E-value=3.5e-17 Score=146.93 Aligned_cols=110 Identities=33% Similarity=0.385 Sum_probs=57.7
Q ss_pred CCCCEEECCCCCCccc-CCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEEccCccccccCCccccCCCCCCeee
Q 037951 73 SFLREINLMNNTIQGE-IPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLA 151 (627)
Q Consensus 73 ~~L~~L~Ls~~~~~~~-~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ 151 (627)
+++++|+|++|.|++. .+..|.++++|+.|+|++|.+....+..+..+++|++|++++|++....+.+|.++++|++|+
T Consensus 29 ~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~ 108 (192)
T d1w8aa_ 29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLN 108 (192)
T ss_dssp TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEE
T ss_pred CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccccccccCHHHHhCCCcccccc
Confidence 3555555555555432 234445555555555555555555555555555555555555555544444555555555555
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEECCCCCCC
Q 037951 152 LPMNNLTGGIPPFLGNLTSLEVVSLAGNPFG 182 (627)
Q Consensus 152 l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~ 182 (627)
|++|.+++..+..|..+++|++|++++|.+.
T Consensus 109 L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~ 139 (192)
T d1w8aa_ 109 LYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred cCCccccccCHHHhcCCcccccccccccccc
Confidence 5555555444444555555555555555444
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.69 E-value=9.1e-17 Score=150.46 Aligned_cols=220 Identities=16% Similarity=0.147 Sum_probs=130.2
Q ss_pred CCcccceeecCCCCcceecccccCCCCCCCEEECCCCCCcccCCcccCCCCCCCEEeCCCCcCccc-CCccccCCCCCCE
Q 037951 47 CEWEGITCDLRSKALSGLLSPQIGNLSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGK-IPANLSYCSRLTV 125 (627)
Q Consensus 47 c~~~~~~c~l~~~~l~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~-~~~~~~~l~~L~~ 125 (627)
|.+..+.| ++.+++ .+|..+. +++++|++++|.++...+.+|.++++|++|++++|.+... .+..|.+++++++
T Consensus 8 C~~~~i~c--~~~~l~-~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~ 82 (242)
T d1xwdc1 8 CSNRVFLC--QESKVT-EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHE 82 (242)
T ss_dssp ECSSEEEE--ESCSCS-SCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCE
T ss_pred CcCCEEEE--eCCCCC-CcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccc
Confidence 44444444 445555 3344432 4788888888888755556788888888888888877643 3446778888888
Q ss_pred EEccC-ccccccCCccccCCCCCCeeeCCCCCCCCCCC-CCCCCCCCCCEEECCCCCCCCCCCCccCCCC-CccEEEeeC
Q 037951 126 LVLGN-NKLVGSIPFEFVSLYKLKQLALPMNNLTGGIP-PFLGNLTSLEVVSLAGNPFGGNIPDSLGQLK-ELKTLGIGG 202 (627)
Q Consensus 126 L~ls~-n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~-~L~~L~l~~ 202 (627)
+.+.. |.+....+..|.++++|+++++++|.+....+ ..+..+..+..+...++.+....+..+..++ .++.+++++
T Consensus 83 l~~~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~ 162 (242)
T d1xwdc1 83 IRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNK 162 (242)
T ss_dssp EEEECCTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCS
T ss_pred ccccccccccccccccccccccccccccchhhhcccccccccccccccccccccccccccccccccccccccceeeeccc
Confidence 87764 46666666777888888888888887764322 1233445555555566666644445555543 566677776
Q ss_pred ccccccCCccccCCCCCcEEE-eecccCccCCChhhhhcCCCCceeccCCccccccCCccccCCCCCcEeeccccccccc
Q 037951 203 NNLSGSIPPSIYNLSFLVIFS-VSENQMHGSLPPSLGLYFPNLKLFQTNENFFSGSIPISLSNASKLEYVEIASNSFFGK 281 (627)
Q Consensus 203 n~~~~~~~~~l~~l~~L~~L~-l~~n~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 281 (627)
|.++. ++.......++..+. +.+|.++ .+| +..+.++++|++|++++|++...
T Consensus 163 n~l~~-i~~~~~~~~~l~~~~~l~~n~l~-~l~------------------------~~~f~~l~~L~~L~Ls~N~l~~l 216 (242)
T d1xwdc1 163 NGIQE-IHNCAFNGTQLDELNLSDNNNLE-ELP------------------------NDVFHGASGPVILDISRTRIHSL 216 (242)
T ss_dssp SCCCE-ECTTTTTTCCEEEEECTTCTTCC-CCC------------------------TTTTTTSCCCSEEECTTSCCCCC
T ss_pred ccccc-cccccccchhhhccccccccccc-ccc------------------------HHHhcCCCCCCEEECCCCcCCcc
Confidence 66663 233333333333332 2333333 233 23355666677777766666655
Q ss_pred CccCcCCCCCcCEEec
Q 037951 282 LSVNFGGMKNLSYLIL 297 (627)
Q Consensus 282 ~~~~l~~l~~L~~L~l 297 (627)
.+..|.++++|+.+++
T Consensus 217 ~~~~~~~l~~L~~l~~ 232 (242)
T d1xwdc1 217 PSYGLENLKKLRARST 232 (242)
T ss_dssp CSSSCTTCCEEESSSE
T ss_pred CHHHHcCCcccccCcC
Confidence 4545555555555444
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.67 E-value=4.1e-16 Score=141.92 Aligned_cols=164 Identities=23% Similarity=0.364 Sum_probs=84.5
Q ss_pred CCCCCEEeCCCCccccccchhhcCCCCCcEeeccCCcccccCChhhhCCCCCCEEEccCCccccccChhhcCCCCCCEEE
Q 037951 368 LVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLGDNNLSGVIPSSLGNLERLAILE 447 (627)
Q Consensus 368 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~ 447 (627)
+.+|+.|++++|.++.. + .+..+++|+.|++++|++++. + .++.+++|++|++++|++++ ++ .+..+++|+.|+
T Consensus 45 L~~L~~L~l~~~~i~~l-~-~l~~l~~L~~L~L~~n~i~~l-~-~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~ 118 (210)
T d1h6ta2 45 LNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDI-K-PLANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLS 118 (210)
T ss_dssp HHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEE
T ss_pred hcCccEEECcCCCCCCc-h-hHhhCCCCCEEeCCCccccCc-c-ccccCccccccccccccccc-cc-cccccccccccc
Confidence 34455555555555422 1 244455555555555555532 2 23445555555555555552 22 345555555555
Q ss_pred CcCCcCcccCCccccccccCccEEEccCCccccCCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEECCCCccc
Q 037951 448 MFANELSGTIPGDIFNISSLSVSLDLAENHFVGSIPPRIGNLKALRCFDVSNNDLSGEIPSELGLCSSLEEIYLAENFFN 527 (627)
Q Consensus 448 l~~n~l~~~~~~~~~~~~~ll~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~i~ 527 (627)
+++|.+. .+ ..+..++.+ +.+++++|.+.+ +..+.++++|+++++++|++++ ++ .++++++|++|++++|.++
T Consensus 119 l~~~~~~-~~-~~l~~l~~l-~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~~-i~-~l~~l~~L~~L~Ls~N~i~ 191 (210)
T d1h6ta2 119 LEHNGIS-DI-NGLVHLPQL-ESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISD-IV-PLAGLTKLQNLYLSKNHIS 191 (210)
T ss_dssp CTTSCCC-CC-GGGGGCTTC-CEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCC
T ss_pred ccccccc-cc-ccccccccc-cccccccccccc--cccccccccccccccccccccc-cc-cccCCCCCCEEECCCCCCC
Confidence 5555543 11 223444444 455555555432 1234455666666666666652 32 2566666666666666665
Q ss_pred ccCChhccCCCCCCEEECC
Q 037951 528 GFIPSFFRTSRGIRKVDLS 546 (627)
Q Consensus 528 ~~~~~~l~~l~~L~~L~ls 546 (627)
. ++ .+.++++|+.|+++
T Consensus 192 ~-l~-~l~~l~~L~~L~Ls 208 (210)
T d1h6ta2 192 D-LR-ALAGLKNLDVLELF 208 (210)
T ss_dssp B-CG-GGTTCTTCSEEEEE
T ss_pred C-Ch-hhcCCCCCCEEEcc
Confidence 3 23 35666666666664
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.66 E-value=1.3e-15 Score=138.52 Aligned_cols=180 Identities=21% Similarity=0.280 Sum_probs=137.5
Q ss_pred EccCcccccccchhHHhccccccEEEeecccccccCcccccCCCCCCEEeCCCCccccccchhhcCCCCCcEeeccCCcc
Q 037951 326 SLGGNQFRGALPHSIANLSSQLQILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHF 405 (627)
Q Consensus 326 ~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~ 405 (627)
.+..+.+++.++.. .+. +++.|++++|.+.... .+..+++|++|++++|++++.. .++.+++|+.|++++|++
T Consensus 30 ~l~~~~~~~~~~~~--~L~-~L~~L~l~~~~i~~l~--~l~~l~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n~i 102 (210)
T d1h6ta2 30 NLKKKSVTDAVTQN--ELN-SIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKV 102 (210)
T ss_dssp HTTCSCTTSEECHH--HHH-TCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCC
T ss_pred HhCcCccCCccCHH--Hhc-CccEEECcCCCCCCch--hHhhCCCCCEEeCCCccccCcc--ccccCccccccccccccc
Confidence 34445555444432 233 6888888888887432 4778899999999999888533 367888999999999998
Q ss_pred cccCChhhhCCCCCCEEEccCCccccccChhhcCCCCCCEEECcCCcCcccCCccccccccCccEEEccCCccccCCCcc
Q 037951 406 SGEIPSTLGNLSSLYEIFLGDNNLSGVIPSSLGNLERLAILEMFANELSGTIPGDIFNISSLSVSLDLAENHFVGSIPPR 485 (627)
Q Consensus 406 ~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~ll~~L~l~~n~l~~~~~~~ 485 (627)
++ ++ .+..+++|+.|++++|.+.. ...+..++.++.+++++|.+.+ +..+..++.+ +++++++|++.+. + .
T Consensus 103 ~~-l~-~l~~l~~L~~L~l~~~~~~~--~~~l~~l~~l~~l~~~~n~l~~--~~~~~~l~~L-~~l~l~~n~l~~i-~-~ 173 (210)
T d1h6ta2 103 KD-LS-SLKDLKKLKSLSLEHNGISD--INGLVHLPQLESLYLGNNKITD--ITVLSRLTKL-DTLSLEDNQISDI-V-P 173 (210)
T ss_dssp CC-GG-GGTTCTTCCEEECTTSCCCC--CGGGGGCTTCCEEECCSSCCCC--CGGGGGCTTC-SEEECCSSCCCCC-G-G
T ss_pred cc-cc-cccccccccccccccccccc--cccccccccccccccccccccc--cccccccccc-ccccccccccccc-c-c
Confidence 74 44 47788999999999998763 2457888899999999998863 3456677788 8999999998753 2 3
Q ss_pred ccCCCCCCEEEccCCcccccCCccccCCCCCCEEECCC
Q 037951 486 IGNLKALRCFDVSNNDLSGEIPSELGLCSSLEEIYLAE 523 (627)
Q Consensus 486 l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~ 523 (627)
+.++++|++|++++|+++ .++ .+..+++|++|+|++
T Consensus 174 l~~l~~L~~L~Ls~N~i~-~l~-~l~~l~~L~~L~Ls~ 209 (210)
T d1h6ta2 174 LAGLTKLQNLYLSKNHIS-DLR-ALAGLKNLDVLELFS 209 (210)
T ss_dssp GTTCTTCCEEECCSSCCC-BCG-GGTTCTTCSEEEEEE
T ss_pred ccCCCCCCEEECCCCCCC-CCh-hhcCCCCCCEEEccC
Confidence 789999999999999998 555 589999999999864
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.66 E-value=4e-16 Score=139.87 Aligned_cols=154 Identities=16% Similarity=0.185 Sum_probs=104.9
Q ss_pred CCCEEECcCCcCcccCC-ccccccccCccEEEccCCccccCCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEE
Q 037951 442 RLAILEMFANELSGTIP-GDIFNISSLSVSLDLAENHFVGSIPPRIGNLKALRCFDVSNNDLSGEIPSELGLCSSLEEIY 520 (627)
Q Consensus 442 ~L~~L~l~~n~l~~~~~-~~~~~~~~ll~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ 520 (627)
++++|++++|++.+.++ ..+..+..+ ++|++++|.+.+..+..+..+++|++|++++|+++...+..|.++++|++|+
T Consensus 30 ~l~~L~Ls~N~i~~~~~~~~f~~l~~L-~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~ 108 (192)
T d1w8aa_ 30 HTTELLLNDNELGRISSDGLFGRLPHL-VKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLN 108 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTC-CEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEE
T ss_pred CCCEEEeCCCCCcccccccccCCCceE-eeeeccccccccccccccccccccceeeeccccccccCHHHHhCCCcccccc
Confidence 45555555555543232 233444555 5666666666666666777888888888888888866677788888899999
Q ss_pred CCCCcccccCChhccCCCCCCEEECCCCcCccccchhcccCc-CCeeeCcCCcccccCCCCCccCCCCccccccCCCCcc
Q 037951 521 LAENFFNGFIPSFFRTSRGIRKVDLSRNNFFGQIPIFLEALS-LEYLNLSFNDFEGRLPTRGIFANASAISVGGCNRLCG 599 (627)
Q Consensus 521 L~~n~i~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~~~-L~~L~ls~n~l~~~~p~~~~~~~l~~l~~~~n~~l~~ 599 (627)
|++|.|++..+..|..+++|++|++++|.+....+.. +... ++.+.+..+.+....|.. +..++..++..+...|.
T Consensus 109 L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~-~~~~~l~~~~l~~~~~~c~~p~~--l~~~~l~~L~~n~l~C~ 185 (192)
T d1w8aa_ 109 LYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLA-WFAEWLRKKSLNGGAARCGAPSK--VRDVQIKDLPHSEFKCS 185 (192)
T ss_dssp CCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGH-HHHHHHHHHCCSGGGCBBCSSTT--TTTSBGGGSCTTTCCCC
T ss_pred cCCccccccCHHHhcCCcccccccccccccccccchH-HHhhhhhhhcccCCCeEeCCChh--hcCCEeeecCHhhCcCC
Confidence 9999888888888888889999999998887543321 1122 666677777777666642 45566667777766664
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.64 E-value=4.1e-15 Score=134.03 Aligned_cols=161 Identities=22% Similarity=0.405 Sum_probs=94.4
Q ss_pred CCCCCEEeCCCCccccccchhhcCCCCCcEeeccCCcccccCChhhhCCCCCCEEEccCCccccccChhhcCCCCCCEEE
Q 037951 368 LVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLGDNNLSGVIPSSLGNLERLAILE 447 (627)
Q Consensus 368 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~ 447 (627)
+.++++|++++|.++. + +.+..+++|++|++++|++++.. .++++++|++|++++|.+... + .+..++.|+.|+
T Consensus 39 l~~l~~L~l~~~~i~~-l-~~l~~l~nL~~L~Ls~N~l~~~~--~l~~l~~L~~L~l~~n~~~~~-~-~l~~l~~L~~L~ 112 (199)
T d2omxa2 39 LDQVTTLQADRLGIKS-I-DGVEYLNNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIADI-T-PLANLTNLTGLT 112 (199)
T ss_dssp HTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCC-G-GGTTCTTCSEEE
T ss_pred hcCCCEEECCCCCCCC-c-cccccCCCcCcCccccccccCcc--cccCCcccccccccccccccc-c-cccccccccccc
Confidence 4455555555555542 2 23445556666666666555322 255566666666666655422 2 355566666666
Q ss_pred CcCCcCcccCCccccccccCccEEEccCCccccCCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEECCCCccc
Q 037951 448 MFANELSGTIPGDIFNISSLSVSLDLAENHFVGSIPPRIGNLKALRCFDVSNNDLSGEIPSELGLCSSLEEIYLAENFFN 527 (627)
Q Consensus 448 l~~n~l~~~~~~~~~~~~~ll~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~i~ 527 (627)
+++|.... ...+..++.+ +.+++++|++.. + ..+..+++|++|++++|++++ ++ .++++++|++|++++|+++
T Consensus 113 l~~~~~~~--~~~~~~l~~L-~~L~l~~n~l~~-~-~~l~~~~~L~~L~l~~n~l~~-l~-~l~~l~~L~~L~ls~N~i~ 185 (199)
T d2omxa2 113 LFNNQITD--IDPLKNLTNL-NRLELSSNTISD-I-SALSGLTSLQQLNFSSNQVTD-LK-PLANLTTLERLDISSNKVS 185 (199)
T ss_dssp CCSSCCCC--CGGGTTCTTC-SEEECCSSCCCC-C-GGGTTCTTCSEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCC
T ss_pred cccccccc--ccccchhhhh-HHhhhhhhhhcc-c-ccccccccccccccccccccC-Cc-cccCCCCCCEEECCCCCCC
Confidence 66655542 1234455555 666666666542 2 246677778888888887763 33 4777788888888888877
Q ss_pred ccCChhccCCCCCCEE
Q 037951 528 GFIPSFFRTSRGIRKV 543 (627)
Q Consensus 528 ~~~~~~l~~l~~L~~L 543 (627)
+. + .+.++++|++|
T Consensus 186 ~i-~-~l~~L~~L~~L 199 (199)
T d2omxa2 186 DI-S-VLAKLTNLESL 199 (199)
T ss_dssp CC-G-GGGGCTTCSEE
T ss_pred CC-c-cccCCCCCCcC
Confidence 53 3 46777777765
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.64 E-value=5.1e-16 Score=148.46 Aligned_cols=249 Identities=15% Similarity=0.136 Sum_probs=160.7
Q ss_pred cEEEccCcccccccchhHHhccccccEEEeecccccccCcccccCCCCCCEEeCCCCccccc-cchhhcCCCCCcEeecc
Q 037951 323 QVLSLGGNQFRGALPHSIANLSSQLQILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGS-IPKEMGKLLNLQGLDFG 401 (627)
Q Consensus 323 ~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~-~~~~~~~l~~L~~L~L~ 401 (627)
+.+|++++.+.......+... ....+.+......... .......+|++|++++|.++.. +...+..+++|++|+++
T Consensus 3 ~~lDLs~~~l~~~~l~~l~~~--~~~~lrl~~~~~~~~~-~~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~ 79 (284)
T d2astb2 3 QTLDLTGKNLHPDVTGRLLSQ--GVIAFRCPRSFMDQPL-AEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLE 79 (284)
T ss_dssp SEEECTTCBCCHHHHHHHHHT--TCSEEECTTCEECSCC-CSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECT
T ss_pred CEEECCCCCCCchHHHHHHhc--cceEeeccccccccch-hhhccCCCCCEEECCCCccCHHHHHHHHHhCCCccccccc
Confidence 466777766543222222221 3455555554443222 2233556889999988877643 34556788899999999
Q ss_pred CCcccccCChhhhCCCCCCEEEccCCc-ccccc-ChhhcCCCCCCEEECcCCc-Ccc-cCCcccccc-ccCccEEEccCC
Q 037951 402 GNHFSGEIPSTLGNLSSLYEIFLGDNN-LSGVI-PSSLGNLERLAILEMFANE-LSG-TIPGDIFNI-SSLSVSLDLAEN 476 (627)
Q Consensus 402 ~n~~~~~~~~~~~~~~~L~~L~l~~n~-~~~~~-~~~l~~l~~L~~L~l~~n~-l~~-~~~~~~~~~-~~ll~~L~l~~n 476 (627)
+|.+.+..+..+..+++|++|++++|. ++... ......+++|++|++++|. +.+ .+...+... +.+ +.|+++++
T Consensus 80 ~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L-~~L~l~~~ 158 (284)
T d2astb2 80 GLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETI-TQLNLSGY 158 (284)
T ss_dssp TCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTC-CEEECCSC
T ss_pred ccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhccccccc-chhhhccc
Confidence 998887777778888899999998864 55322 2224568889999998864 321 112223333 345 88888876
Q ss_pred c--cccC-CCccccCCCCCCEEEccCC-cccccCCccccCCCCCCEEECCCC-cccccCChhccCCCCCCEEECCCCcCc
Q 037951 477 H--FVGS-IPPRIGNLKALRCFDVSNN-DLSGEIPSELGLCSSLEEIYLAEN-FFNGFIPSFFRTSRGIRKVDLSRNNFF 551 (627)
Q Consensus 477 ~--l~~~-~~~~l~~l~~L~~L~Ls~n-~l~~~~~~~l~~l~~L~~L~L~~n-~i~~~~~~~l~~l~~L~~L~ls~n~l~ 551 (627)
. +... +.....++++|++|++++| .+++.....+..+++|++|++++| .+++.....+..+++|+.|++++|--.
T Consensus 159 ~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~~~d 238 (284)
T d2astb2 159 RKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPD 238 (284)
T ss_dssp GGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTSSCT
T ss_pred ccccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCCCCH
Confidence 3 3221 2222356889999999987 477677778888999999999995 677766677888999999999988222
Q ss_pred cccchhcccCcCCeeeCcCCcccccC
Q 037951 552 GQIPIFLEALSLEYLNLSFNDFEGRL 577 (627)
Q Consensus 552 ~~~p~~~~~~~L~~L~ls~n~l~~~~ 577 (627)
+.++..... +..|++..+++++..
T Consensus 239 ~~l~~l~~~--lp~L~i~~~~ls~~~ 262 (284)
T d2astb2 239 GTLQLLKEA--LPHLQINCSHFTTIA 262 (284)
T ss_dssp TCHHHHHHH--STTSEESCCCSCCTT
T ss_pred HHHHHHHHh--CccccccCccCCCCC
Confidence 233322222 445666777776544
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.64 E-value=2.9e-15 Score=135.05 Aligned_cols=176 Identities=23% Similarity=0.340 Sum_probs=122.0
Q ss_pred EeCCCCccccccchhhcCCCCCcEeeccCCcccccCChhhhCCCCCCEEEccCCccccccChhhcCCCCCCEEECcCCcC
Q 037951 374 LQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLGDNNLSGVIPSSLGNLERLAILEMFANEL 453 (627)
Q Consensus 374 L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l 453 (627)
..++.+.+++... ...+++++.|++++|.++. + +.++.+++|++|++++|++++.. .+.++++|+.|++++|.+
T Consensus 23 ~~l~~~~~~~~~~--~~~l~~l~~L~l~~~~i~~-l-~~l~~l~nL~~L~Ls~N~l~~~~--~l~~l~~L~~L~l~~n~~ 96 (199)
T d2omxa2 23 TVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKS-I-DGVEYLNNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQI 96 (199)
T ss_dssp HHTTCSSTTSEEC--HHHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCC
T ss_pred HHhCCCCCCCccC--HHHhcCCCEEECCCCCCCC-c-cccccCCCcCcCccccccccCcc--cccCCccccccccccccc
Confidence 3455555554433 2356788899999998874 3 34777889999999999888543 378888899999988877
Q ss_pred cccCCccccccccCccEEEccCCccccCCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEECCCCcccccCChh
Q 037951 454 SGTIPGDIFNISSLSVSLDLAENHFVGSIPPRIGNLKALRCFDVSNNDLSGEIPSELGLCSSLEEIYLAENFFNGFIPSF 533 (627)
Q Consensus 454 ~~~~~~~~~~~~~ll~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~ 533 (627)
. .++ .+..+..+ +.+++++|..... ..+..+++|+.|++++|++. .++ .+..+++|++|++++|.+++.. .
T Consensus 97 ~-~~~-~l~~l~~L-~~L~l~~~~~~~~--~~~~~l~~L~~L~l~~n~l~-~~~-~l~~~~~L~~L~l~~n~l~~l~--~ 167 (199)
T d2omxa2 97 A-DIT-PLANLTNL-TGLTLFNNQITDI--DPLKNLTNLNRLELSSNTIS-DIS-ALSGLTSLQQLNFSSNQVTDLK--P 167 (199)
T ss_dssp C-CCG-GGTTCTTC-SEEECCSSCCCCC--GGGTTCTTCSEEECCSSCCC-CCG-GGTTCTTCSEEECCSSCCCCCG--G
T ss_pred c-ccc-cccccccc-ccccccccccccc--cccchhhhhHHhhhhhhhhc-ccc-cccccccccccccccccccCCc--c
Confidence 6 333 36667777 7888887777643 34667788888888888776 333 5777788888888888777542 3
Q ss_pred ccCCCCCCEEECCCCcCccccchhcccCc-CCee
Q 037951 534 FRTSRGIRKVDLSRNNFFGQIPIFLEALS-LEYL 566 (627)
Q Consensus 534 l~~l~~L~~L~ls~n~l~~~~p~~~~~~~-L~~L 566 (627)
++++++|++|++++|++++ ++. +..++ |++|
T Consensus 168 l~~l~~L~~L~ls~N~i~~-i~~-l~~L~~L~~L 199 (199)
T d2omxa2 168 LANLTTLERLDISSNKVSD-ISV-LAKLTNLESL 199 (199)
T ss_dssp GTTCTTCCEEECCSSCCCC-CGG-GGGCTTCSEE
T ss_pred ccCCCCCCEEECCCCCCCC-Ccc-ccCCCCCCcC
Confidence 6777888888888887763 442 34444 5543
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.54 E-value=4.3e-15 Score=146.72 Aligned_cols=90 Identities=18% Similarity=0.301 Sum_probs=51.4
Q ss_pred cccCCCCCCEEEccCCccccc----CCccccCCCCCCEEECCCCcccccCC----hhccC--CCCCCEEECCCCcCcc--
Q 037951 485 RIGNLKALRCFDVSNNDLSGE----IPSELGLCSSLEEIYLAENFFNGFIP----SFFRT--SRGIRKVDLSRNNFFG-- 552 (627)
Q Consensus 485 ~l~~l~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~L~~n~i~~~~~----~~l~~--l~~L~~L~ls~n~l~~-- 552 (627)
.+..+++|++|++++|.++.. +...+..++.|++|++++|.+++... ..+.. .+.|++|++++|.+..
T Consensus 210 ~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~ 289 (344)
T d2ca6a1 210 GLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDA 289 (344)
T ss_dssp TGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHH
T ss_pred hhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHH
Confidence 345566677777777766522 33445666777777777777665422 22222 3567777777777653
Q ss_pred --ccchhcc-cCc-CCeeeCcCCccc
Q 037951 553 --QIPIFLE-ALS-LEYLNLSFNDFE 574 (627)
Q Consensus 553 --~~p~~~~-~~~-L~~L~ls~n~l~ 574 (627)
.+...+. ..+ |++|++++|.+.
T Consensus 290 ~~~l~~~l~~~~~~L~~L~l~~N~~~ 315 (344)
T d2ca6a1 290 VRTLKTVIDEKMPDLLFLELNGNRFS 315 (344)
T ss_dssp HHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred HHHHHHHHHccCCCCCEEECCCCcCC
Confidence 1233332 233 777777777764
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.54 E-value=7.1e-15 Score=140.33 Aligned_cols=181 Identities=17% Similarity=0.177 Sum_probs=83.8
Q ss_pred CcccEEEccCcccccccchhHHhccccccEEEeecccccccCcccccCCCCCCEEeCCCC-ccccc-cchhhcCCCCCcE
Q 037951 320 SKLQVLSLGGNQFRGALPHSIANLSSQLQILVLGTNQLYGSIPSGIGNLVNLYSLQTEEN-QFTGS-IPKEMGKLLNLQG 397 (627)
Q Consensus 320 ~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~~~~~-~~~~~~~l~~L~~ 397 (627)
.+|++|++++|.+++.....+....++|++|++++|.+++.....+..+++|++|++++| .++.. +......+++|++
T Consensus 46 ~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~ 125 (284)
T d2astb2 46 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDE 125 (284)
T ss_dssp BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCE
T ss_pred CCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccc
Confidence 456666666665553332222222235555555555554444444555555555555554 23311 1112234555555
Q ss_pred eeccCCc-cccc-CChhh-hCCCCCCEEEccCCc--cccc-cChhhcCCCCCCEEECcCCcCcccCCccccccccCccEE
Q 037951 398 LDFGGNH-FSGE-IPSTL-GNLSSLYEIFLGDNN--LSGV-IPSSLGNLERLAILEMFANELSGTIPGDIFNISSLSVSL 471 (627)
Q Consensus 398 L~L~~n~-~~~~-~~~~~-~~~~~L~~L~l~~n~--~~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~ll~~L 471 (627)
|++++|. +++. +...+ ..+++|+.|+++++. ++.. +......+++|++|++++|.
T Consensus 126 L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~------------------- 186 (284)
T d2astb2 126 LNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSV------------------- 186 (284)
T ss_dssp EECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCT-------------------
T ss_pred cccccccccccccchhhhcccccccchhhhccccccccccccccccccccccccccccccc-------------------
Confidence 5555542 2211 11111 123455555555432 2211 11112334445555544432
Q ss_pred EccCCccccCCCccccCCCCCCEEEccCC-cccccCCccccCCCCCCEEECCCC
Q 037951 472 DLAENHFVGSIPPRIGNLKALRCFDVSNN-DLSGEIPSELGLCSSLEEIYLAEN 524 (627)
Q Consensus 472 ~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n-~l~~~~~~~l~~l~~L~~L~L~~n 524 (627)
.+++.....+.++++|++|++++| .+++.....++.+++|+.|+++++
T Consensus 187 -----~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~ 235 (284)
T d2astb2 187 -----MLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 235 (284)
T ss_dssp -----TCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred -----CCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence 122233334555666666666664 455444455666666777776666
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.52 E-value=1.6e-15 Score=149.75 Aligned_cols=113 Identities=17% Similarity=0.164 Sum_probs=68.8
Q ss_pred CCCCCCEEECcCCcCccc-----CCccccccccCccEEEccCCccccC----CCccccCCCCCCEEEccCCcccccC---
Q 037951 439 NLERLAILEMFANELSGT-----IPGDIFNISSLSVSLDLAENHFVGS----IPPRIGNLKALRCFDVSNNDLSGEI--- 506 (627)
Q Consensus 439 ~l~~L~~L~l~~n~l~~~-----~~~~~~~~~~ll~~L~l~~n~l~~~----~~~~l~~l~~L~~L~Ls~n~l~~~~--- 506 (627)
.++.|+.|+++.|.+... +...+...+.+ +.|++++|.+... +...+..+++|++|++++|.+++..
T Consensus 184 ~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L-~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~ 262 (344)
T d2ca6a1 184 SHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQEL-KVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAA 262 (344)
T ss_dssp HCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTC-CEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHH
T ss_pred hhhhhcccccccccccccccccchhhhhcchhhh-cccccccccccccccccccccccccccchhhhhhcCccCchhhHH
Confidence 344555555555544321 11223334444 5566666555321 2244667788999999999887542
Q ss_pred -CccccC--CCCCCEEECCCCccccc----CChhcc-CCCCCCEEECCCCcCcc
Q 037951 507 -PSELGL--CSSLEEIYLAENFFNGF----IPSFFR-TSRGIRKVDLSRNNFFG 552 (627)
Q Consensus 507 -~~~l~~--l~~L~~L~L~~n~i~~~----~~~~l~-~l~~L~~L~ls~n~l~~ 552 (627)
...+.. .+.|++|++++|.|+.. +...+. +++.|+.|++++|.+..
T Consensus 263 l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~ 316 (344)
T d2ca6a1 263 VVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE 316 (344)
T ss_dssp HHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred HHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCC
Confidence 223332 46799999999988754 233343 57889999999999864
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.52 E-value=7.4e-15 Score=126.75 Aligned_cols=128 Identities=23% Similarity=0.211 Sum_probs=83.4
Q ss_pred ccCCCCCCCEEECCCCCCcccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEEccCccccccCCccccCCCCC
Q 037951 68 QIGNLSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKL 147 (627)
Q Consensus 68 ~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L 147 (627)
.+.+...+|+|+|++|+|+ .++..+..+++|++|+|++|.++. + +.|..+++|++|++++|+++...+..+..+++|
T Consensus 13 ~~~n~~~lr~L~L~~n~I~-~i~~~~~~l~~L~~L~Ls~N~i~~-l-~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L 89 (162)
T d1a9na_ 13 QYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRK-L-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 89 (162)
T ss_dssp EEECTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCE-E-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred hccCcCcCcEEECCCCCCC-ccCccccccccCCEEECCCCCCCc-c-CCcccCcchhhhhcccccccCCCcccccccccc
Confidence 3456667788888888877 445556677788888888887773 3 247777788888888887775545555667777
Q ss_pred CeeeCCCCCCCCCC-CCCCCCCCCCCEEECCCCCCCCCCCC----ccCCCCCccEEE
Q 037951 148 KQLALPMNNLTGGI-PPFLGNLTSLEVVSLAGNPFGGNIPD----SLGQLKELKTLG 199 (627)
Q Consensus 148 ~~L~l~~n~l~~~~-~~~l~~l~~L~~L~L~~n~~~~~~~~----~l~~l~~L~~L~ 199 (627)
++|++++|.+.... ...+.++++|++|++++|.+.. .+. .+..+++|++||
T Consensus 90 ~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~-~~~~r~~~i~~lp~L~~LD 145 (162)
T d1a9na_ 90 TELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLD 145 (162)
T ss_dssp CEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEET
T ss_pred ccceeccccccccccccccccccccchhhcCCCcccc-ccchHHHHHHHCCCcCeeC
Confidence 77777777776321 1345666677777777766652 221 244455555554
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.50 E-value=4.2e-14 Score=115.78 Aligned_cols=102 Identities=25% Similarity=0.300 Sum_probs=69.5
Q ss_pred CEEECCCCCCcccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEEccCccccccCCccccCCCCCCeeeCCCC
Q 037951 76 REINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPMN 155 (627)
Q Consensus 76 ~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n 155 (627)
|+|++++|+++ .++ .++.+++|++|++++|+++ .+|..++.+++|++|++++|.++. ++ .+..+++|++|++++|
T Consensus 1 R~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~-l~-~~~~l~~L~~L~l~~N 75 (124)
T d1dcea3 1 RVLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNN 75 (124)
T ss_dssp SEEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSS
T ss_pred CEEEcCCCCCC-CCc-ccccCCCCCEEECCCCccC-cchhhhhhhhcccccccccccccc-cC-ccccccccCeEECCCC
Confidence 56777777776 344 3677777777777777777 566667777777777777777763 33 4677777777777777
Q ss_pred CCCCCC-CCCCCCCCCCCEEECCCCCCC
Q 037951 156 NLTGGI-PPFLGNLTSLEVVSLAGNPFG 182 (627)
Q Consensus 156 ~l~~~~-~~~l~~l~~L~~L~L~~n~~~ 182 (627)
.++... ...+..+++|++|++++|.+.
T Consensus 76 ~i~~~~~~~~l~~~~~L~~L~l~~N~i~ 103 (124)
T d1dcea3 76 RLQQSAAIQPLVSCPRLVLLNLQGNSLC 103 (124)
T ss_dssp CCCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred ccCCCCCchhhcCCCCCCEEECCCCcCC
Confidence 776432 234666677777777777665
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.46 E-value=3.1e-14 Score=122.75 Aligned_cols=111 Identities=21% Similarity=0.145 Sum_probs=75.5
Q ss_pred cCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEEccCccccccCCccccCCCCCCeeeCCCCCCCCCCCCCCCCCCCCC
Q 037951 93 FGRLRRLETLLLSDNSLVGKIPANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTGGIPPFLGNLTSLE 172 (627)
Q Consensus 93 ~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 172 (627)
|.+..+++.|+|++|+|+ .++..+..+++|++|++++|+++. + ..+..+++|++|++++|.++...+..+..+++|+
T Consensus 14 ~~n~~~lr~L~L~~n~I~-~i~~~~~~l~~L~~L~Ls~N~i~~-l-~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~ 90 (162)
T d1a9na_ 14 YTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRK-L-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT 90 (162)
T ss_dssp EECTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCE-E-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred ccCcCcCcEEECCCCCCC-ccCccccccccCCEEECCCCCCCc-c-CCcccCcchhhhhcccccccCCCccccccccccc
Confidence 556777888888888887 445556777788888888887773 3 3467777777777777777754444455677777
Q ss_pred EEECCCCCCCCCCC-CccCCCCCccEEEeeCcccc
Q 037951 173 VVSLAGNPFGGNIP-DSLGQLKELKTLGIGGNNLS 206 (627)
Q Consensus 173 ~L~L~~n~~~~~~~-~~l~~l~~L~~L~l~~n~~~ 206 (627)
+|++++|.+..... ..+..+++|++|++++|.++
T Consensus 91 ~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~ 125 (162)
T d1a9na_ 91 ELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT 125 (162)
T ss_dssp EEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG
T ss_pred cceeccccccccccccccccccccchhhcCCCccc
Confidence 77777777763211 34556666777777666665
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.46 E-value=1.5e-13 Score=112.33 Aligned_cols=102 Identities=25% Similarity=0.288 Sum_probs=72.0
Q ss_pred CEEeCCCCcCcccCCccccCCCCCCEEEccCccccccCCccccCCCCCCeeeCCCCCCCCCCCCCCCCCCCCCEEECCCC
Q 037951 100 ETLLLSDNSLVGKIPANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTGGIPPFLGNLTSLEVVSLAGN 179 (627)
Q Consensus 100 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n 179 (627)
|+|+|++|+++ .++ .+.++++|++|++++|+++ .+|..++.+++|++|++++|.+++ ++ .++++++|++|++++|
T Consensus 1 R~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~-l~-~~~~l~~L~~L~l~~N 75 (124)
T d1dcea3 1 RVLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNN 75 (124)
T ss_dssp SEEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSS
T ss_pred CEEEcCCCCCC-CCc-ccccCCCCCEEECCCCccC-cchhhhhhhhcccccccccccccc-cC-ccccccccCeEECCCC
Confidence 57788888887 444 4777788888888888877 566677778888888888887774 33 4777777777777777
Q ss_pred CCCCCC-CCccCCCCCccEEEeeCcccc
Q 037951 180 PFGGNI-PDSLGQLKELKTLGIGGNNLS 206 (627)
Q Consensus 180 ~~~~~~-~~~l~~l~~L~~L~l~~n~~~ 206 (627)
++.... ...+..+++|++|++++|+++
T Consensus 76 ~i~~~~~~~~l~~~~~L~~L~l~~N~i~ 103 (124)
T d1dcea3 76 RLQQSAAIQPLVSCPRLVLLNLQGNSLC 103 (124)
T ss_dssp CCCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred ccCCCCCchhhcCCCCCCEEECCCCcCC
Confidence 776432 234566667777777776665
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.25 E-value=1.3e-11 Score=105.20 Aligned_cols=104 Identities=19% Similarity=0.138 Sum_probs=62.9
Q ss_pred EEECCCCCCcccCCcccCCCCCCCEEeCCCC-cCcccCCccccCCCCCCEEEccCccccccCCccccCCCCCCeeeCCCC
Q 037951 77 EINLMNNTIQGEIPLEFGRLRRLETLLLSDN-SLVGKIPANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPMN 155 (627)
Q Consensus 77 ~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n 155 (627)
.++.+++.+. ..|..+..+++|+.|+++++ .++...+.+|.++++|+.|++++|+++...+.+|..+++|++|+|++|
T Consensus 12 ~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N 90 (156)
T d2ifga3 12 GLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (156)
T ss_dssp CEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred eEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCC
Confidence 3455555544 34555666666666666544 355445555666666777777766666555666666677777777777
Q ss_pred CCCCCCCCCCCCCCCCCEEECCCCCCC
Q 037951 156 NLTGGIPPFLGNLTSLEVVSLAGNPFG 182 (627)
Q Consensus 156 ~l~~~~~~~l~~l~~L~~L~L~~n~~~ 182 (627)
+++...+..+. ..+|++|++++|.+.
T Consensus 91 ~l~~l~~~~~~-~~~l~~L~L~~Np~~ 116 (156)
T d2ifga3 91 ALESLSWKTVQ-GLSLQELVLSGNPLH 116 (156)
T ss_dssp CCSCCCSTTTC-SCCCCEEECCSSCCC
T ss_pred CCcccChhhhc-cccccccccCCCccc
Confidence 76633333333 335777777777664
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=99.23 E-value=2.3e-13 Score=121.60 Aligned_cols=126 Identities=25% Similarity=0.273 Sum_probs=54.2
Q ss_pred hhCCCCCCEEEccCCccccccChhhcCCCCCCEEECcCCcCcccCCccccccccCccEEEccCCccccCCCccccCCCCC
Q 037951 413 LGNLSSLYEIFLGDNNLSGVIPSSLGNLERLAILEMFANELSGTIPGDIFNISSLSVSLDLAENHFVGSIPPRIGNLKAL 492 (627)
Q Consensus 413 ~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~ll~~L~l~~n~l~~~~~~~l~~l~~L 492 (627)
+..+++|++|++++|.++. ++ .+..+++|+.|++++|.+. .+|........+ ++|++++|.+... ..+..+++|
T Consensus 44 l~~L~~L~~L~Ls~n~I~~-i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L-~~L~l~~N~i~~l--~~~~~l~~L 117 (198)
T d1m9la_ 44 LSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTL-EELWISYNQIASL--SGIEKLVNL 117 (198)
T ss_dssp HHHTTTCCEEECSEEEESC-CC-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHC-CEEECSEEECCCH--HHHHHHHHS
T ss_pred HhcccccceeECcccCCCC-cc-cccCCccccChhhcccccc-cccccccccccc-ccccccccccccc--ccccccccc
Confidence 3334444444444444432 11 2334444444444444433 222222222233 4444444444321 124445555
Q ss_pred CEEEccCCcccccCC-ccccCCCCCCEEECCCCcccccCChh----------ccCCCCCCEEE
Q 037951 493 RCFDVSNNDLSGEIP-SELGLCSSLEEIYLAENFFNGFIPSF----------FRTSRGIRKVD 544 (627)
Q Consensus 493 ~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~L~~n~i~~~~~~~----------l~~l~~L~~L~ 544 (627)
++|++++|+++.... ..++.+++|+.|++++|++....+.. +..+++|+.||
T Consensus 118 ~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD 180 (198)
T d1m9la_ 118 RVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp SEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred cccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence 555555555542111 23555556666666666554332221 34456666665
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.22 E-value=3.5e-11 Score=102.54 Aligned_cols=105 Identities=17% Similarity=0.128 Sum_probs=78.4
Q ss_pred cEEEccCCccccCCCccccCCCCCCEEEccCC-cccccCCccccCCCCCCEEECCCCcccccCChhccCCCCCCEEECCC
Q 037951 469 VSLDLAENHFVGSIPPRIGNLKALRCFDVSNN-DLSGEIPSELGLCSSLEEIYLAENFFNGFIPSFFRTSRGIRKVDLSR 547 (627)
Q Consensus 469 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n-~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~ls~ 547 (627)
+.++.+++.+. ..|..+..+++|++|++++| .++...+..|.++++|+.|++++|+|+...+..|..+++|++|+|++
T Consensus 11 ~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~ 89 (156)
T d2ifga3 11 SGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (156)
T ss_dssp SCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred CeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccC
Confidence 45666666665 45566777788888888765 47655556788888888888888888887788888888888888888
Q ss_pred CcCccccchhcccCcCCeeeCcCCccc
Q 037951 548 NNFFGQIPIFLEALSLEYLNLSFNDFE 574 (627)
Q Consensus 548 n~l~~~~p~~~~~~~L~~L~ls~n~l~ 574 (627)
|++....+..+...+|++|++++|++.
T Consensus 90 N~l~~l~~~~~~~~~l~~L~L~~Np~~ 116 (156)
T d2ifga3 90 NALESLSWKTVQGLSLQELVLSGNPLH 116 (156)
T ss_dssp SCCSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred CCCcccChhhhccccccccccCCCccc
Confidence 888854555555556888888888774
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=99.17 E-value=9.4e-13 Score=117.55 Aligned_cols=136 Identities=16% Similarity=0.195 Sum_probs=92.9
Q ss_pred ccchhhcCCCCCcEeeccCCcccccCChhhhCCCCCCEEEccCCccccccChhhcCCCCCCEEECcCCcCcccCCccccc
Q 037951 384 SIPKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLGDNNLSGVIPSSLGNLERLAILEMFANELSGTIPGDIFN 463 (627)
Q Consensus 384 ~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~ 463 (627)
.++..+..+++|++|++++|+++. ++ .+..+++|++|++++|.++ .++.....+++|+.|++++|.+.. + ..+..
T Consensus 39 ~l~~sl~~L~~L~~L~Ls~n~I~~-i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~~-l-~~~~~ 113 (198)
T d1m9la_ 39 KMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-L-SGIEK 113 (198)
T ss_dssp CCHHHHHHTTTCCEEECSEEEESC-CC-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECCC-H-HHHHH
T ss_pred hhhhHHhcccccceeECcccCCCC-cc-cccCCccccChhhcccccc-cccccccccccccccccccccccc-c-ccccc
Confidence 344566777777777777777763 33 4667777777887777776 345444555677888888877763 3 34666
Q ss_pred cccCccEEEccCCccccCCC-ccccCCCCCCEEEccCCcccccCCcc----------ccCCCCCCEEECCCCccc
Q 037951 464 ISSLSVSLDLAENHFVGSIP-PRIGNLKALRCFDVSNNDLSGEIPSE----------LGLCSSLEEIYLAENFFN 527 (627)
Q Consensus 464 ~~~ll~~L~l~~n~l~~~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~----------l~~l~~L~~L~L~~n~i~ 527 (627)
++++ ++|++++|++..... ..+..+++|++|++++|++....+.. +..+++|+.|| +..++
T Consensus 114 l~~L-~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD--~~~I~ 185 (198)
T d1m9la_ 114 LVNL-RVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp HHHS-SEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES--SGGGT
T ss_pred cccc-cccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC--CccCC
Confidence 7777 788888888764321 35778899999999999886443332 56788999875 55554
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.26 E-value=1.6e-08 Score=86.30 Aligned_cols=64 Identities=27% Similarity=0.111 Sum_probs=25.8
Q ss_pred CCCCCCEEEccCccccccC--CccccCCCCCCeeeCCCCCCCCCCCCCCCCCCCCCEEECCCCCCC
Q 037951 119 YCSRLTVLVLGNNKLVGSI--PFEFVSLYKLKQLALPMNNLTGGIPPFLGNLTSLEVVSLAGNPFG 182 (627)
Q Consensus 119 ~l~~L~~L~ls~n~l~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~ 182 (627)
.+++|++|++++|+++... +..+..+++|+.|++++|.++...+....+..+|++|++++|.+.
T Consensus 63 ~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~ 128 (162)
T d1koha1 63 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLS 128 (162)
T ss_dssp HCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTS
T ss_pred hCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcC
Confidence 3444444444444444221 122334444444444444444221111112233444555555444
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.12 E-value=2.8e-07 Score=78.34 Aligned_cols=81 Identities=25% Similarity=0.277 Sum_probs=40.6
Q ss_pred CCCCCCEEeCCCCccccc--cchhhcCCCCCcEeeccCCcccccCChhhhCCCCCCEEEccCCccccccC-------hhh
Q 037951 367 NLVNLYSLQTEENQFTGS--IPKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLGDNNLSGVIP-------SSL 437 (627)
Q Consensus 367 ~l~~L~~L~l~~n~~~~~--~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-------~~l 437 (627)
.++.|+.|++++|+++.. ++..+..+++|+.|++++|.+....+-.+.....|+.|++++|++..... ..+
T Consensus 63 ~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i~ 142 (162)
T d1koha1 63 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIR 142 (162)
T ss_dssp HCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHHH
T ss_pred hCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHHH
Confidence 344555555555555432 12334455666666666666653322233334456666666666553322 124
Q ss_pred cCCCCCCEEE
Q 037951 438 GNLERLAILE 447 (627)
Q Consensus 438 ~~l~~L~~L~ 447 (627)
..+|+|+.||
T Consensus 143 ~~~P~L~~LD 152 (162)
T d1koha1 143 ERFPKLLRLD 152 (162)
T ss_dssp TTSTTCCEET
T ss_pred HHCCCCCEEC
Confidence 4566676664
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=97.74 E-value=1e-05 Score=68.70 Aligned_cols=65 Identities=15% Similarity=0.178 Sum_probs=33.6
Q ss_pred ccCCCCCCEEEccCCccccc----CCccccCCCCCCEEECCCCccccc----CChhccCCCCCCEEECCCCcC
Q 037951 486 IGNLKALRCFDVSNNDLSGE----IPSELGLCSSLEEIYLAENFFNGF----IPSFFRTSRGIRKVDLSRNNF 550 (627)
Q Consensus 486 l~~l~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~L~~n~i~~~----~~~~l~~l~~L~~L~ls~n~l 550 (627)
+...++|++|++++|.+... +...+...+.|++|+|++|.++.. +..++...++|++|++++|.+
T Consensus 40 L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~ 112 (167)
T d1pgva_ 40 ACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQ 112 (167)
T ss_dssp HTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSS
T ss_pred HhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcC
Confidence 33445556666666655422 222344455666666666655543 223444556666666665543
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=97.73 E-value=6.6e-06 Score=69.95 Aligned_cols=40 Identities=8% Similarity=-0.076 Sum_probs=19.0
Q ss_pred hcCCCCCcEeeccCCccccc-------CChhhhCCCCCCEEEccCCc
Q 037951 389 MGKLLNLQGLDFGGNHFSGE-------IPSTLGNLSSLYEIFLGDNN 428 (627)
Q Consensus 389 ~~~l~~L~~L~L~~n~~~~~-------~~~~~~~~~~L~~L~l~~n~ 428 (627)
+...++|++|++++|.+... +...+...++|+.|+++.+.
T Consensus 96 L~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~ 142 (167)
T d1pgva_ 96 TLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 142 (167)
T ss_dssp TTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCC
Confidence 34445555555555543211 22333445666666665543
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=97.05 E-value=8.8e-05 Score=62.68 Aligned_cols=22 Identities=14% Similarity=0.222 Sum_probs=12.2
Q ss_pred cccCCCCCcccEEEccCccccc
Q 037951 313 MNSLANCSKLQVLSLGGNQFRG 334 (627)
Q Consensus 313 ~~~l~~~~~L~~L~l~~n~~~~ 334 (627)
..++...++|++|++++|.++.
T Consensus 39 ~~al~~n~~L~~L~Ls~n~l~~ 60 (166)
T d1io0a_ 39 AEALKTNTYVKKFSIVGTRSND 60 (166)
T ss_dssp HHHHTTCCSCCEEECTTSCCCH
T ss_pred HHHHhcCCccCeeeccCCcccH
Confidence 3344455666666666665543
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=96.95 E-value=0.00024 Score=59.81 Aligned_cols=87 Identities=15% Similarity=0.160 Sum_probs=44.4
Q ss_pred cCCCCCCEEeCCCCccccc----cchhhcCCCCCcEeeccCCccccc----CChhhhCCCCCCEEEcc--CCcccc----
Q 037951 366 GNLVNLYSLQTEENQFTGS----IPKEMGKLLNLQGLDFGGNHFSGE----IPSTLGNLSSLYEIFLG--DNNLSG---- 431 (627)
Q Consensus 366 ~~l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~L~~n~~~~~----~~~~~~~~~~L~~L~l~--~n~~~~---- 431 (627)
...++|++|++++|.++.. +...+...++++.+++++|.+... +...+...++|+.++|+ +|.+..
T Consensus 43 ~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~ 122 (166)
T d1io0a_ 43 KTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEM 122 (166)
T ss_dssp TTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHH
T ss_pred hcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHHHHHHhCccccEEeeccCCCcCcHHHHH
Confidence 3445555566665555422 223344456666666666665422 22334455666655443 344432
Q ss_pred ccChhhcCCCCCCEEECcCCc
Q 037951 432 VIPSSLGNLERLAILEMFANE 452 (627)
Q Consensus 432 ~~~~~l~~l~~L~~L~l~~n~ 452 (627)
.+...+...++|+.|++..+.
T Consensus 123 ~La~~L~~n~~L~~L~l~~~~ 143 (166)
T d1io0a_ 123 EIANMLEKNTTLLKFGYHFTQ 143 (166)
T ss_dssp HHHHHHHHCSSCCEEECCCSS
T ss_pred HHHHHHHhCCCcCEEeCcCCC
Confidence 123344566677777776543
|