Citrus Sinensis ID: 037953
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 625 | 2.2.26 [Sep-21-2011] | |||||||
| Q9LRR5 | 1424 | Putative disease resistan | yes | no | 0.728 | 0.319 | 0.296 | 1e-38 | |
| Q9LRR4 | 1054 | Putative disease resistan | no | no | 0.705 | 0.418 | 0.281 | 2e-29 | |
| Q7XBQ9 | 970 | Disease resistance protei | N/A | no | 0.641 | 0.413 | 0.273 | 7e-27 | |
| Q7XA40 | 992 | Putative disease resistan | N/A | no | 0.561 | 0.353 | 0.294 | 2e-25 | |
| Q7XA39 | 988 | Putative disease resistan | N/A | no | 0.558 | 0.353 | 0.278 | 2e-23 | |
| Q7XA42 | 979 | Putative disease resistan | N/A | no | 0.584 | 0.372 | 0.268 | 6e-23 | |
| Q8W3K3 | 910 | Putative disease resistan | no | no | 0.686 | 0.471 | 0.240 | 4e-09 | |
| Q6L3X3 | 1202 | Putative late blight resi | N/A | no | 0.596 | 0.310 | 0.251 | 5e-08 | |
| Q8W474 | 907 | Probable disease resistan | no | no | 0.633 | 0.436 | 0.213 | 6e-07 | |
| Q8W3K0 | 1138 | Probable disease resistan | no | no | 0.100 | 0.055 | 0.417 | 1e-06 |
| >sp|Q9LRR5|DRL21_ARATH Putative disease resistance protein At3g14460 OS=Arabidopsis thaliana GN=At3g14460 PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 161 bits (408), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 149/502 (29%), Positives = 228/502 (45%), Gaps = 47/502 (9%)
Query: 3 MEMIAEGYFDYLATRSLFQEFQRDEEGIVKRCKMHDIVHDFALFLNKKECAAVEVEGVEE 62
+E I Y L +S FQ V MHD+++D A ++ C +E + + E
Sbjct: 458 LEDIGNDYLGDLVAQSFFQRLDITMTSFV----MHDLMNDLAKAVSGDFCFRLEDDNIPE 513
Query: 63 PLLLINTCPEKLRHLMLVLGYEAPSLV--SIFNAIKLRSLILFYWIPNLDAMLPVLKGIF 120
P RH S+ SI A LR+++ F +L+++ K +
Sbjct: 514 -------IPSTTRHFSFSRSQCDASVAFRSICGAEFLRTILPFNSPTSLESLQLTEKVLN 566
Query: 121 DQLTCLRALRIEGTDNWELEEDQTNEILNGVEKLIHLRYLKLNL--VGDLPEKCCELLNL 178
L L LRI ++ Q + ++ L LRYL L+ + +LPE C L NL
Sbjct: 567 PLLNALSGLRILSLSHY-----QITNLPKSLKGLKLLRYLDLSSTKIKELPEFVCTLCNL 621
Query: 179 QTLELENSSHFKRFPQGIGKLINLRHLIFTEDLLEYMPKGIEKLTSLRTLSEFVVA--SG 236
QTL L N P+ I +LINLR L L MP GI+KL SL+ LS FV+ SG
Sbjct: 622 QTLLLSNCRDLTSLPKSIAELINLRLLDLVGTPLVEMPPGIKKLRSLQKLSNFVIGRLSG 681
Query: 237 GGRYGSEACKLEGLRHLNHLRGSLKVRGLGNVADVDEVKNAHLEKKKNLVRLILRFKDID 296
G L L+ L+HLRG+L++ L NVA E K+A L++K L LIL++
Sbjct: 682 AG--------LHELKELSHLRGTLRISELQNVAFASEAKDAGLKRKPFLDGLILKW--TV 731
Query: 297 KAVKRWPEAISNENAAKHEAICEALWPPPNLESLEIAGFRGRKMMLSTNWM--ASLNMLK 354
K P + N A + + L P P+L++ I ++G W+ +S +
Sbjct: 732 KGSGFVPGSF-NALACDQKEVLRMLEPHPHLKTFCIESYQGGAF---PKWLGDSSFFGIT 787
Query: 355 KLRLLNCPTCEIMPPLGQLPSLEILLIKDMTSVERVGDESLGIANGDHGAPSSSSVNNIA 414
+ L +C C +PP+GQLPSL+ L I+ +++VG + N G P
Sbjct: 788 SVTLSSCNLCISLPPVGQLPSLKYLSIEKFNILQKVGLDFFFGENNSRGVP--------- 838
Query: 415 FPKLKELEFSGLQEWEDWDFRKEDITIMPQINSLSIYGCHKLKSLPDQLLQSSTLKTLRI 474
F L+ L+F G+ W++W + + I P + L I C L+ + L SST T+
Sbjct: 839 FQSLQILKFYGMPRWDEWICPELEDGIFPCLQKLIIQRCPSLRKKFPEGLPSSTEVTISD 898
Query: 475 NRCRVLEEHFKKDRSKISHIPD 496
R + R +++IP+
Sbjct: 899 CPLRAVSGGENSFRRSLTNIPE 920
|
Potential disease resistance protein. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LRR4|R13L1_ARATH Putative disease resistance RPP13-like protein 1 OS=Arabidopsis thaliana GN=RPPL1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 130 bits (328), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 143/508 (28%), Positives = 225/508 (44%), Gaps = 67/508 (13%)
Query: 3 MEMIAEGYFDYLATRSLFQEFQRDEEGIVKRCKMHDIVHDFALFLNKKECAAVEVEGVEE 62
+E + YF L +RSL Q+ + R MHD +++ A F + + + E +G +
Sbjct: 466 LEELGNEYFSELESRSLLQKTK-------TRYIMHDFINELAQFASGEFSSKFE-DGCKL 517
Query: 63 PLLLINTCPEKLRHL-MLVLGYEAPSLVSIFNAIKLRSLILFYWIPN------LDAMLPV 115
+ E+ R+L L Y P +K L + N LD M V
Sbjct: 518 QV------SERTRYLSYLRDNYAEPMEFEALREVKFLRTFLPLSLTNSSRSCCLDQM--V 569
Query: 116 LKGIFDQLTCLRALRIEGTDNWELEEDQTNEILNGVEKLIHLRYLKLNL--VGDLPEKCC 173
+ + LT LR L + L D + + H R+L L+ + LP+ C
Sbjct: 570 SEKLLPTLTRLRVLSLSHYKIARLPPD-------FFKNISHARFLDLSRTELEKLPKSLC 622
Query: 174 ELLNLQTLELENSSHFKRFPQGIGKLINLRHLIFTEDLLEYMPKGIEKLTSLRTLSEFVV 233
+ NLQTL L S K P I LINLR+L L MP+ +L SL+TL+ F V
Sbjct: 623 YMYNLQTLLLSYCSSLKELPTDISNLINLRYLDLIGTKLRQMPRRFGRLKSLQTLTTFFV 682
Query: 234 ASGGGRYGSEACKLEGLRHLNHLRGSLKVRGLGNVADVDEVKNAHLEKKKNLVRLILRFK 293
++ G SE L L+ L G LK+ L V DV + A+L KK+L +
Sbjct: 683 SASDGSRISE------LGGLHDLHGKLKIVELQRVVDVADAAEANLNSKKHL-------R 729
Query: 294 DID---KAVKRWPEAISNENAAKHEA-ICEALWPPPNLESLEIAGFRGRKMMLSTNWMA- 348
+ID + E +N + ++EA + E L P ++E L I ++GR+ +W++
Sbjct: 730 EIDFVWRTGSSSSENNTNPHRTQNEAEVFEKLRPHRHIEKLAIERYKGRRF---PDWLSD 786
Query: 349 -SLNMLKKLRLLNCPTCEIMPPLGQLPSLEILLIKDMTSVERVGDESLGIANGDHGAPSS 407
S + + +RL C C +P LGQLP L+ L I M ++ +G +
Sbjct: 787 PSFSRIVCIRLRECQYCTSLPSLGQLPCLKELHISGMVGLQSIGRKFY------FSDQQL 840
Query: 408 SSVNNIAFPKLKELEFSGLQEWEDW-DFRKEDITIMPQINSLSIYGCHKLK-SLPDQLLQ 465
+ F L+ L F L +W++W D R + P + L I C +L +LP L
Sbjct: 841 RDQDQQPFRSLETLRFDNLPDWQEWLDVRVTRGDLFPSLKKLFILRCPELTGTLPTFL-- 898
Query: 466 SSTLKTLRINRCRVLEEHFKKDRSKISH 493
+L +L I +C +L+ F+ D + S+
Sbjct: 899 -PSLISLHIYKCGLLD--FQPDHHEYSY 923
|
Potential disease resistance protein. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q7XBQ9|RGA2_SOLBU Disease resistance protein RGA2 OS=Solanum bulbocastanum GN=RGA2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 122 bits (307), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 141/516 (27%), Positives = 218/516 (42%), Gaps = 115/516 (22%)
Query: 1 MEMEMIAEGYFDYLATRSLFQEFQRDEEGIVKRCKMHDIVHDFALFLNKKECAAVEVEGV 60
ME+E + + + L RS FQE + + KMHD++HD A L ++ + +
Sbjct: 440 MELEDVGDEVWKELYLRSFFQEIEVKDGKTY--FKMHDLIHDLATSLFSANTSSSNIREI 497
Query: 61 EEPLLLINTCPEKLRHLMLVLGYEAPSLVSIFNAIKLRSLILFYWIPNLDAMLPVLKGIF 120
+ H+M +I ++ FY +P L+ +
Sbjct: 498 NK---------HSYTHMM---------------SIGFAEVVFFYTLPPLEKFIS------ 527
Query: 121 DQLTCLRALRIEGTDNWELEEDQTNEILNGVEKLIHLRYLKLNLVG--DLPEKCCELLNL 178
LR L L + N++ + + L+HLRYL L G LP++ C+L NL
Sbjct: 528 -----LRVLN--------LGDSTFNKLPSSIGDLVHLRYLNLYGSGMRSLPKQLCKLQNL 574
Query: 179 QTLELENSSHFKRFPQGIGKLINLRHLIFT-EDLLEYMPKGIEKLTSLRTLSEFVVASGG 237
QTL+L+ + P+ KL +LR+L+ L MP I LT L+TL +FVV
Sbjct: 575 QTLDLQYCTKLCCLPKETSKLGSLRNLLLDGSQSLTCMPPRIGSLTCLKTLGQFVVGRKK 634
Query: 238 GRYGSEACKLEGLRHLNHLRGSLKVRGLGNVADVDEVKNAHLEKKKNLVRLILRFKDIDK 297
G +L L +LN L GS+K+ L V + + K A+L K NL L + + +
Sbjct: 635 GY------QLGELGNLN-LYGSIKISHLERVKNDKDAKEANLSAKGNLHSLSMSWNNFG- 686
Query: 298 AVKRWPEAISNENAAKHEAICEALWPPPNLESLEIAGFRGRKMMLSTNWM--ASLNMLKK 355
P +E + EAL P NL SL+I GFRG + WM + L +
Sbjct: 687 -----PHIYESEEV----KVLEALKPHSNLTSLKIYGFRGIHL---PEWMNHSVLKNIVS 734
Query: 356 LRLLNCPTCEIMPPLGQLPSLEIL-LIKDMTSVERVGDESLGIANGDHGAPSSSSVNNIA 414
+ + N C +PP G LP LE L L VE V + + + + G P+ I
Sbjct: 735 ILISNFRNCSCLPPFGDLPCLESLELHWGSADVEYVEEVDIDVHS---GFPT-----RIR 786
Query: 415 FPKLKELEFSGLQEWEDWDF-------RKEDITIMPQINSLSIYGCHKL----------- 456
FP L++L+ WDF +KE P + + I+ C L
Sbjct: 787 FPSLRKLDI--------WDFGSLKGLLKKEGEEQFPVLEEMIIHECPFLTLSSNLRALTS 838
Query: 457 ---------KSLPDQLLQS-STLKTLRINRCRVLEE 482
S P+++ ++ + LK L I+RC L+E
Sbjct: 839 LRICYNKVATSFPEEMFKNLANLKYLTISRCNNLKE 874
|
Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth. Confers a broad resistance to all known races of P.infestans. Solanum bulbocastanum (taxid: 147425) |
| >sp|Q7XA40|RGA3_SOLBU Putative disease resistance protein RGA3 OS=Solanum bulbocastanum GN=RGA3 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 118 bits (295), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 128/435 (29%), Positives = 193/435 (44%), Gaps = 84/435 (19%)
Query: 1 MEMEMIAEGYFDYLATRSLFQEFQRDEEGIVKRCKMHDIVHDFALFLNKKECAAVEVEGV 60
ME+E + ++ L RS FQE + KMHD++HD A + ++ + +
Sbjct: 439 MELEDVGNEVWNELYLRSFFQEIEVKSGKTY--FKMHDLIHDLATSMFSASASSRSIRQI 496
Query: 61 ----EEPLLLINTCPEKLRHLMLVLGYEAPSLVSIFNAIKLRSLILFYWIPNLDAMLPVL 116
+E ++ I T + M+ +G+ S ++ + P+L
Sbjct: 497 NVKDDEDMMFIVTNYKD----MMSIGF---------------SEVVSSYSPSL------- 530
Query: 117 KGIFDQLTCLRALRIEGTDNWELEEDQTNEILNGVEKLIHLRYLKL--NLVGDLPEKCCE 174
F + LR L + N E E+ + + V L+HLRYL L N + LP++ C+
Sbjct: 531 ---FKRFVSLRVLNL---SNSEFEQ-----LPSSVGDLVHLRYLDLSGNKICSLPKRLCK 579
Query: 175 LLNLQTLELENSSHFKRFPQGIGKLINLRHLIFTEDLLEYMPKGIEKLTSLRTLSEFVVA 234
L NLQTL+L N P+ KL +LR+L+ L MP I LT L+TL FVV
Sbjct: 580 LQNLQTLDLYNCQSLSCLPKQTSKLCSLRNLVLDHCPLTSMPPRIGLLTCLKTLGYFVV- 638
Query: 235 SGGGRYGSEACKLEGLRHLNHLRGSLKVRGLGNVADVDEVKNAHLEKKKNLVRLILRFKD 294
G R G + L LR+LN LRG++ + L V + E K A+L K NL L +
Sbjct: 639 --GERKGYQ---LGELRNLN-LRGAISITHLERVKNDMEAKEANLSAKANLHSLSM---- 688
Query: 295 IDKAVKRWPEAISNENAAKHEAICEALWPPPNLESLEIAGFRGRKMMLSTNWM--ASLNM 352
W N ++ + EAL P PNL+ LEI F G + +WM + L
Sbjct: 689 ------SWDRP--NRYESEEVKVLEALKPHPNLKYLEIIDFCGFCL---PDWMNHSVLKN 737
Query: 353 LKKLRLLNCPTCEIMPPLGQLPSLEILLIKDMT-SVERVGDESLGIANGDHGAPSSSSVN 411
+ + + C C +PP G+LP LE L ++D + VE V D S +
Sbjct: 738 VVSILISGCENCSCLPPFGELPCLESLELQDGSVEVEYVED--------------SGFLT 783
Query: 412 NIAFPKLKELEFSGL 426
FP L++L G
Sbjct: 784 RRRFPSLRKLHIGGF 798
|
Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth. Solanum bulbocastanum (taxid: 147425) |
| >sp|Q7XA39|RGA4_SOLBU Putative disease resistance protein RGA4 OS=Solanum bulbocastanum GN=RGA4 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 111 bits (277), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 123/442 (27%), Positives = 188/442 (42%), Gaps = 93/442 (21%)
Query: 1 MEMEMIAEGYFDYLATRSLFQEFQRDEEGIVKRCKMHDIVHDFA--LFLNKKECAAVEVE 58
+E+E + ++ L RS FQE + K+HD++HD A LF C +
Sbjct: 441 LELEDVGNEVWNELYLRSFFQEIEAKSGNTY--FKIHDLIHDLATSLFSASASCGNIREI 498
Query: 59 GVEEPLLLINTCPEKLRHLMLVLGYEAPSLVSIFNAIKLRSLILFYWIPNLDAMLPVLKG 118
V++ ++ V+ +PSL+ F + LR L L Y
Sbjct: 499 NVKDYKHTVSI------GFAAVVSSYSPSLLKKF--VSLRVLNLSY-------------- 536
Query: 119 IFDQLTCLRALRIEGTDNWELEEDQTNEILNGVEKLIHLRYLKL--NLVGDLPEKCCELL 176
+ ++ + + L+HLRYL L N LPE+ C+L
Sbjct: 537 -----------------------SKLEQLPSSIGDLLHLRYLDLSCNNFRSLPERLCKLQ 573
Query: 177 NLQTLELENSSHFKRFPQGIGKLINLRHLIFTEDLLEYMPKGIEKLTSLRTLSEFVVASG 236
NLQTL++ N P+ KL +LRHL+ L P I LT L+TL F+V S
Sbjct: 574 NLQTLDVHNCYSLNCLPKQTSKLSSLRHLVVDGCPLTSTPPRIGLLTCLKTLGFFIVGSK 633
Query: 237 GGRYGSEACKLEGLRHLNHLRGSLKVRGLGNVADVDEVKNAHLEKKKNLVRLILRFKDID 296
G +L L++LN L GS+ + L V + D A+L K NL L +
Sbjct: 634 KGY------QLGELKNLN-LCGSISITHLERVKN-DTDAEANLSAKANLQSLSM------ 679
Query: 297 KAVKRWPEAISNENAAKHEAICEALWPPPNLESLEIAGFRGRKMMLSTNWM--ASLNMLK 354
W N +K + EAL P PNL+ LEI F G + +W+ + L +
Sbjct: 680 ----SWDNDGPNRYESKEVKVLEALKPHPNLKYLEIIAFGGFRF---PSWINHSVLEKVI 732
Query: 355 KLRLLNCPTCEIMPPLGQLPSLEILLIKDMTS-VERVGDESLGIANGDHGAPSSSSVNNI 413
+R+ +C C +PP G+LP LE L +++ ++ VE V ++ + H S+
Sbjct: 733 SVRIKSCKNCLCLPPFGELPCLENLELQNGSAEVEYVEEDDV------HSRFSTRR---- 782
Query: 414 AFPKLKELEFSGLQEWEDWDFR 435
+FP LK+L W FR
Sbjct: 783 SFPSLKKLRI--------WFFR 796
|
Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth. Solanum bulbocastanum (taxid: 147425) |
| >sp|Q7XA42|RGA1_SOLBU Putative disease resistance protein RGA1 OS=Solanum bulbocastanum GN=RGA1 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 109 bits (273), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 124/462 (26%), Positives = 199/462 (43%), Gaps = 97/462 (20%)
Query: 1 MEMEMIAEGYFDYLATRSLFQEFQRDEEGIVKRCKMHDIVHDFALFLNKKECAAVEVEGV 60
+E+E + ++ L RS FQE + E KMHD++HD A L ++ + +
Sbjct: 439 LELEDVGNEVWNELYLRSFFQEIEV--ESGKTYFKMHDLIHDLATSLFSANTSSSNIREI 496
Query: 61 EEPLLLINTCPEKLRHLMLVLGYEAPSLVSIFNAIKLRSLILFYWIPNLDAMLPVLKGIF 120
M+ +G+ +VS ++ P+L
Sbjct: 497 NA----------NYDGYMMSIGF--AEVVSSYS-------------PSL----------L 521
Query: 121 DQLTCLRALRIEGTDNWELEEDQTNEILNGVEKLIHLRYLKLN---LVGDLPEKCCELLN 177
+ LR L + ++ N++ + + L+HLRYL L+ + +LP++ C+L N
Sbjct: 522 QKFVSLRVLNLRNSN--------LNQLPSSIGDLVHLRYLDLSGNFRIRNLPKRLCKLQN 573
Query: 178 LQTLELENSSHFKRFPQGIGKLINLRHLIFTEDLLEYMPKGIEKLTSLRTLSEFVVASGG 237
LQTL+L P+ KL +LR+L+ L P I LT L++LS FV+ G
Sbjct: 574 LQTLDLHYCDSLSCLPKQTSKLGSLRNLLLDGCSLTSTPPRIGLLTCLKSLSCFVI---G 630
Query: 238 GRYGSEACKLEGLRHLNHLRGSLKVRGLGNVADVDEVKNAHLEKKKNLVRLILRFKDIDK 297
R G + +L+ L +L GS+ + L V + K A+L K NL L L + D+D
Sbjct: 631 KRKGHQLGELKNL----NLYGSISITKLDRVKKDTDAKEANLSAKANLHSLCLSW-DLDG 685
Query: 298 AVKRWPEAISNENAAKHEAICEALWPPPNLESLEIAGFRGRKMMLSTNWM--ASLNMLKK 355
+ E + EAL P NL+ LEI GF G ++ +WM + L +
Sbjct: 686 KHRYDSEVL------------EALKPHSNLKYLEINGFGGIRL---PDWMNQSVLKNVVS 730
Query: 356 LRLLNCPTCEIMPPLGQLPSLEIL-LIKDMTSVERVGDESLGIANGDHGAPSSSSVNNIA 414
+R+ C C +PP G+LP LE L L VE V D +V+
Sbjct: 731 IRIRGCENCSCLPPFGELPCLESLELHTGSADVEYVED----------------NVHPGR 774
Query: 415 FPKLKEL---EFSGLQEWEDWDFRKEDITIMPQINSLSIYGC 453
FP L++L +FS L+ + K+ P + ++ Y C
Sbjct: 775 FPSLRKLVIWDFSNLKGLLKMEGEKQ----FPVLEEMTFYWC 812
|
Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth. Solanum bulbocastanum (taxid: 147425) |
| >sp|Q8W3K3|DRL8_ARATH Putative disease resistance protein At1g58400 OS=Arabidopsis thaliana GN=At1g58400 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 63.5 bits (153), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 121/503 (24%), Positives = 211/503 (41%), Gaps = 74/503 (14%)
Query: 6 IAEGYFDYLATRSLFQEFQRDEEGI-VKRCKMHDIVHDFALFLNKKECAAVEVEGVEEPL 64
+ E Y + L R++ +RD + + C +HD++ + L L KE V++ + P
Sbjct: 468 VGESYIEELVRRNMVIA-ERDVTTLRFEACHLHDMMREVCL-LKAKEENFVQIASILPPT 525
Query: 65 LLINTCPEKLRHLMLVLGYEAPSLVSI---FNAIKLRSLILFYWIPNLDAMLPVLKGIFD 121
+ P R + + P+ + + N KL+SL++ + N +L F
Sbjct: 526 A-NSQYPGTSRRFV----SQNPTTLHVSRDINNPKLQSLLIVW--ENRRKSWKLLGSSFI 578
Query: 122 QLTCLRALRIEGTDNWELEEDQTNEILNGVEKLIHLRYLKLNL--VGDLPEKCCELLNLQ 179
+L LR L D ++ + + N + +G+ KLIHLRYL L+L V LP L L
Sbjct: 579 RLELLRVL-----DLYKAKFEGRN-LPSGIGKLIHLRYLNLDLARVSRLPSSLGNLRLLI 632
Query: 180 TLELENSSHFKRFPQGIGKLINLRHLIFTEDLLEYMPKGIEKLTSLRTLSEFVVASGGGR 239
L++ + P + + LR+L + + + G+ L +L TL F
Sbjct: 633 YLDINVCTKSLFVPNCLMGMHELRYLRLPFNTSKEIKLGLCNLVNLETLENF-------- 684
Query: 240 YGSEACKLEGLRHLNHLRGSLKVRGLGNVADVDEVKNAHLEKKKNLVRLILRFKDIDKAV 299
+E LE LR + LR +L + +++ K+ L IL + ++
Sbjct: 685 -STENSSLEDLRGMVSLR-TLTIGLFKHIS------------KETLFASILGMRHLENLS 730
Query: 300 KRWPEAISNENAAKHEAICEALWPPPNLESLEIAGFRGRKMMLS-TNWMASLNMLKKLRL 358
R P+ S + I L+++ + R M + + L + L
Sbjct: 731 IRTPDGSSKFKRIMEDGIV--------LDAIHLKQLNLRLYMPKLPDEQHFPSHLTSISL 782
Query: 359 LNCPTCEIMPPLGQLPSLEILLIKDMTSVERVGDESLGIANGDHGAPSSSSVNNIAFPKL 418
C C + PL P LE LL ++ + + D G FP+L
Sbjct: 783 DGC--CLVEDPL---PILEKLLELKEVRLDFRAFCGKRMVSSDGG-----------FPQL 826
Query: 419 KELEFSGLQEWEDWDFRKEDITIMPQINSLSIYGCHKLKSLPDQLLQSSTLKTLRINR-- 476
L GL EWE+W + MP++++L+I+ C KLK LPD L ++K L +++
Sbjct: 827 HRLYIWGLAEWEEWIVEEGS---MPRLHTLTIWNCQKLKQLPDGLRFIYSIKDLDMDKKW 883
Query: 477 CRVLEEHFKKDRSKISHIPDIQI 499
+L E ++ K+ HIP ++
Sbjct: 884 KEILSEG-GEEYYKVQHIPSVKF 905
|
Potential disease resistance protein. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q6L3X3|R1B8_SOLDE Putative late blight resistance protein homolog R1B-8 OS=Solanum demissum GN=R1B-8 PE=5 SV=1 | Back alignment and function description |
|---|
Score = 60.1 bits (144), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 125/498 (25%), Positives = 193/498 (38%), Gaps = 125/498 (25%)
Query: 3 MEMIAEGYFDYLATRSLFQEFQRD-EEGIVKRCKMHDIVHDFALFLNKKECAAVEVEGVE 61
+E IAEGY + L R+L QR +G VK C++HD++ DF KK A E
Sbjct: 745 LEYIAEGYLENLIGRNLVMVTQRAISDGKVKACRLHDVLLDFC----KKRAAE------E 794
Query: 62 EPLLLIN------TCPEKLRHLMLVLGYEAPSLVSIFNAIKLRSLILF-----YWIPNLD 110
LL IN +H L E +LV + L +LF Y+ P L
Sbjct: 795 NFLLWINRDQSTKAVYSHKQHAHLAFT-EMDNLVEWSASCSLVGSVLFKSYDPYFRP-LS 852
Query: 111 AMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEILNGV-EKLIHLRYLKLNL-VGDL 168
+ + I L+ L +E I++ + +L +LRYL ++ +
Sbjct: 853 SHAFAISHILLNFKFLKVLDLEH-----------QVIIDFIPTELFYLRYLSAHIDQNSI 901
Query: 169 PEKCCELLNLQTLELENSSHFKR----FPQGIGKLINLRHL---IFTEDLLEYMPKGIEK 221
P L NL+TL L++ S K P + ++ LRHL F+ + E + + K
Sbjct: 902 PSSISNLWNLETLILKSRSASKHNRVLLPSTVWDMVKLRHLHIPYFSTEDEEALLENSAK 961
Query: 222 LTSLRTLSEFVVASGGGRYGSEACKLEGLRHLNHLRGSLKVRGLGNVADVDEVKNAHLEK 281
L L TLS Y S E + LR + +R L + +V +++ H
Sbjct: 962 LYDLETLS--------SPYFSRVEDAELM-----LRRTPNLRKL--ICEVQCLESPHQYH 1006
Query: 282 KKNL-VRL-ILRFKDIDKAVKRWPEAISNENAAKHEAICEALWPPPNLESLEIAGFRGRK 339
N +RL IL+ + KA K P IS PNL+ L+++ F
Sbjct: 1007 VLNFPIRLEILKLYNRSKAFKTIPFCIS----------------APNLKYLKLSRFYLDS 1050
Query: 340 MMLSTNWMASLNMLKKLRLLNCPTCEIMPPLGQLPSLEILLIKDMTSVERVGDESLGIAN 399
LS + + LK L +L E
Sbjct: 1051 QYLS----ETADHLKHLEVLKLSCVEF--------------------------------- 1073
Query: 400 GDHGAPSSSSVNNIAFPKLK--ELEFSGLQEWEDWDFRKEDITIMPQINSLSIYGCHKLK 457
GDHG V+N FP+LK +LE+ L +W D + P + L + GC L
Sbjct: 1074 GDHG---EWEVSNGMFPQLKILKLEYVSLMKWIVAD------DVFPNLEQLVLRGCRHLM 1124
Query: 458 SLPDQLLQSSTLKTLRIN 475
+P + +LK ++++
Sbjct: 1125 EIPSCFMDILSLKYIKVD 1142
|
Confers resistance to late blight (Phytophthora infestans) races carrying the avirulence gene Avr1. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Solanum demissum (taxid: 50514) |
| >sp|Q8W474|DRL7_ARATH Probable disease resistance protein At1g58390 OS=Arabidopsis thaliana GN=At1g58390 PE=2 SV=4 | Back alignment and function description |
|---|
Score = 56.6 bits (135), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 114/535 (21%), Positives = 201/535 (37%), Gaps = 139/535 (25%)
Query: 6 IAEGYFDYLATRSLFQEFQRDEEGI-VKRCKMHDIVHDFALFLNKKE---CAAVEVEGVE 61
+ + Y + L R++ ++RD C +HD++ + LF K+E AV+ GV
Sbjct: 465 VGQSYLEELVRRNMII-WERDATASRFGTCHLHDMMREVCLFKAKEENFLQIAVKSVGVT 523
Query: 62 EPLLLINTCPEKLRHLMLVLGYEAPSLVSI---FNAIKLRSLILFY---WIPNLDAMLPV 115
+ P + R L+ Y+ P+ + + N KLRSL++ + W+
Sbjct: 524 SSSTGNSQSPCRSRRLV----YQCPTTLHVERDINNPKLRSLVVLWHDLWV--------- 570
Query: 116 LKGIFDQLTCLRALRIEGTDNWELEEDQTNEILNGVEKLIHLRYLKLNLVGDLPEKCCEL 175
+NW KL+ + +L L+ +
Sbjct: 571 -------------------ENW---------------KLLGTSFTRLKLL--------RV 588
Query: 176 LNLQTLELENSSHFKRFPQGIGKLINLRHLIFTEDLLEYMPKGIEKLTSLRTL-----SE 230
L+L ++ E + P GIG LI+LR+L + + ++P + L L L +E
Sbjct: 589 LDLFYVDFEGM----KLPFGIGNLIHLRYLSLQDAKVSHLPSSLGNLMLLIYLNLDVDTE 644
Query: 231 FVVASGGGRYGSEACKLEGLRHLN-----HLRGSLKVRGLGNVADVDEVKNAHLEKKKNL 285
F+ ++ LR+L H + L +R L + + H K
Sbjct: 645 FIFVP------DVFMRMHELRYLKLPLHMHKKTRLSLRNLVKLETLVYFSTWHSSSK--- 695
Query: 286 VRLILRFKDIDKAVKRWPEAISNENAAKHEAICEALWPPPNLESLEIAGFRGRKM----- 340
D+ + AI E + ++ NLE L I G +KM
Sbjct: 696 --------DLCGMTRLMTLAIRLTRVTSTETLSASISGLRNLEYLYIVGTHSKKMREEGI 747
Query: 341 ----------MLSTNWMASLNMLKKLRLLNCPTCEI----MPPLGQLPSLE-ILLIKDMT 385
+L + +L + C + MP L +L L+ ++L+K
Sbjct: 748 VLDFIHLKHLLLDLYMPRQQHFPSRLTFVKLSECGLEEDPMPILEKLLHLKGVILLKGSY 807
Query: 386 SVERVGDESLGIANGDHGAPSSSSVNNIAFPKLKELEFSGLQEWEDWDFRKEDITIMPQI 445
R+ + +G FP+LK+LE GL +WE+W + MP +
Sbjct: 808 CGRRM------VCSGG------------GFPQLKKLEIVGLNKWEEWLVEEGS---MPLL 846
Query: 446 NSLSIYGCHKLKSLPDQLLQSSTLKTLRI-NRCRVLEEHFKKDRSKISHIPDIQI 499
+LSI C +LK +PD L +L+ + + R + +D K+ HIP ++
Sbjct: 847 ETLSILDCEELKEIPDGLRFIYSLELVMLGTRWKKKFSVGGEDYYKVQHIPSVEF 901
|
Possible disease resistance protein. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8W3K0|DRL9_ARATH Probable disease resistance protein At1g58602 OS=Arabidopsis thaliana GN=At1g58602 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 55.5 bits (132), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 44/67 (65%), Gaps = 4/67 (5%)
Query: 411 NNIAFPKLKELEFSGLQEWEDWDFRKEDITIMPQINSLSIYGCHKLKSLPDQLLQSSTLK 470
++ FP+L++L SGL+EWEDW K + + MP + +L+I+ C KLK LPD+ L S L
Sbjct: 819 SSCGFPQLQKLSISGLKEWEDW---KVEESSMPLLLTLNIFDCRKLKQLPDEHLPSH-LT 874
Query: 471 TLRINRC 477
+ + +C
Sbjct: 875 AISLKKC 881
|
Potential disease resistance protein. Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 625 | ||||||
| 359482788 | 903 | PREDICTED: putative disease resistance p | 0.72 | 0.498 | 0.410 | 1e-83 | |
| 359482769 | 904 | PREDICTED: putative disease resistance p | 0.72 | 0.497 | 0.404 | 7e-83 | |
| 359482792 | 922 | PREDICTED: putative disease resistance p | 0.712 | 0.482 | 0.408 | 3e-81 | |
| 359482790 | 923 | PREDICTED: putative disease resistance p | 0.718 | 0.486 | 0.406 | 1e-79 | |
| 147825450 | 927 | hypothetical protein VITISV_000086 [Viti | 0.721 | 0.486 | 0.399 | 1e-79 | |
| 359482784 | 919 | PREDICTED: putative disease resistance p | 0.716 | 0.487 | 0.404 | 6e-78 | |
| 224110248 | 888 | cc-nbs-lrr resistance protein [Populus t | 0.740 | 0.521 | 0.386 | 4e-77 | |
| 147843549 | 970 | hypothetical protein VITISV_000507 [Viti | 0.713 | 0.459 | 0.391 | 6e-77 | |
| 224122712 | 945 | cc-nbs-lrr resistance protein [Populus t | 0.729 | 0.482 | 0.399 | 1e-75 | |
| 224122696 | 906 | cc-nbs-lrr resistance protein [Populus t | 0.750 | 0.517 | 0.392 | 1e-75 |
| >gi|359482788|ref|XP_003632840.1| PREDICTED: putative disease resistance protein RGA4-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 317 bits (812), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 208/507 (41%), Positives = 293/507 (57%), Gaps = 57/507 (11%)
Query: 2 EMEMIAEGYFDYLATRSLFQEFQRDEEGIVKRCKMHDIVHDFALFLNKKECAAVEVEGVE 61
EMEMI YF+YLA RS FQ+F++D +G + RCKMHDIVHDFA FL + EC VEV+
Sbjct: 440 EMEMIGRTYFEYLAARSFFQDFEKDTDGNIIRCKMHDIVHDFAQFLTQNECFIVEVDN-- 497
Query: 62 EPLLLINTCPEKLRHLMLVLGYEAPSLVSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFD 121
+ + I+ +K+RH+ LV+ P+ VS +N L +L+ + ++L L +
Sbjct: 498 QQMESIDLSFKKIRHITLVVRESTPNFVSTYNMKNLHTLLAKEAFKS--SVLVALPNLLR 555
Query: 122 QLTCLRALRIEGTDNWELEEDQTNEILNGVEKLIHLRYLKLN---LVGDLPEKCCELLNL 178
LTCLRAL + E E+ V KLIHLR+L L+ + +LPE C+L NL
Sbjct: 556 HLTCLRALDLSSNQLIE-------ELPKEVGKLIHLRFLNLSGCFWLRELPETICDLYNL 608
Query: 179 QTLELENSSHFKRFPQGIGKLINLRHLIFTEDLLEYMPKGIEKLTSLRTLSEFVVASGGG 238
QTL ++ S ++ PQ +GKLINLRHL + + +PKGI +L+SL+TL+ F+V+S
Sbjct: 609 QTLNIQGCSSLRKLPQAMGKLINLRHLENSFLNNKGLPKGIGRLSSLQTLNVFIVSS--- 665
Query: 239 RYGSEACKLEGLRHLNHLRGSLKVRGLGNVADVDEVKNAHLEKKKNLVRLILRFKDIDKA 298
+G++ ++ LR+LN+LRG L ++GL V D E + A L+ K +L L L F D ++
Sbjct: 666 -HGNDEGQIGDLRNLNNLRGDLSIQGLDEVKDAGEAEKAELKNKVHLQDLTLGF-DREEG 723
Query: 299 VKRWPEAISNENAAKHEAICEALWPPPNLESLEIAGFRGRKMMLSTNWM--ASLNMLKKL 356
K + EAL P PNL++L I + R+ NWM +SL LK L
Sbjct: 724 TK---------------GVAEALQPHPNLKALHIYYYGDREW---PNWMMGSSLAQLKIL 765
Query: 357 RLLNCPTCEIMPPLGQLPSLEILLIKDMTSVERVGDESLGIANGDHGAPSSSSVNNIAFP 416
L C C +PPLGQLP LE L I M V+ +G E LG SSS+V FP
Sbjct: 766 NLKFCERCPCLPPLGQLPVLEELGIWKMYGVKYIGSEFLG---------SSSTV----FP 812
Query: 417 KLKELEFSGLQEWEDWDFR-KEDITIMPQINSLSIYGCHKLKSLPDQLLQSSTLKTLRIN 475
KLKEL SGL + + W+ + KE+ +IMP +N L + GC KL+ LP +LQ +TL+ L I
Sbjct: 813 KLKELAISGLDKLKQWEIKEKEERSIMPCLNHLIMRGCPKLEGLPGHVLQRTTLQILNIR 872
Query: 476 RCRVLEEHFKK----DRSKISHIPDIQ 498
+LE ++K DR KISHIP ++
Sbjct: 873 SSPILERRYRKDIGEDRHKISHIPQVK 899
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359482769|ref|XP_003632834.1| PREDICTED: putative disease resistance protein RGA4-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 315 bits (806), Expect = 7e-83, Method: Compositional matrix adjust.
Identities = 207/512 (40%), Positives = 288/512 (56%), Gaps = 62/512 (12%)
Query: 2 EMEMIAEGYFDYLATRSLFQEFQRDEEGIVKRCKMHDIVHDFALFLNKKECAAVEVEGVE 61
EMEM+ YF+YLA RS FQ+F++D +G + RC+MHDIVHDFA FL + EC VEV+ +
Sbjct: 443 EMEMVGRTYFEYLAARSFFQDFEKDTDGNIIRCEMHDIVHDFAQFLTQNECFIVEVDNQK 502
Query: 62 EPLLLINTCPEKLRHLMLVLGYEAPSLVSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFD 121
+ + + +K+RH LV+ P+ S N L +L+ +A +
Sbjct: 503 KGSM--DLFFQKIRHATLVVRESTPNFASTCNMKNLHTLL------AKEAFDSRVLEALG 554
Query: 122 QLTCLRALRIEGTDNWELEEDQTNEILNGVEKLIHLRYLKLNL---VGDLPEKCCELLNL 178
LTCLRAL + D W E+ V KLIHLRYL L+ + +LPE C+L NL
Sbjct: 555 NLTCLRALDLSSND-W------IEELPKEVGKLIHLRYLNLSWCESLRELPETICDLYNL 607
Query: 179 QTLELENSSHFKRFPQGIGKLINLRHLIFTEDLLEYMPKGIEKLTSLRTLSEFVVASGGG 238
QTL +E S ++ P +GKLINLRHL L+ +PKGI +L+SL+TL F+V+S
Sbjct: 608 QTLNIEGCSSLQKLPHAMGKLINLRHLENYTRSLKGLPKGIGRLSSLQTLDVFIVSS--- 664
Query: 239 RYGSEACKLEGLRHLNHLRGSLKVRGLGNVADVDEVKNAHLEKKKNLVRLILRFKDIDKA 298
+G++ C++ LR+LN+LRG L V GL V D E + A L+ + + L L F + +
Sbjct: 665 -HGNDECQIGDLRNLNNLRGRLSVEGLDEVKDAGEPEKAELKNRVHFQYLTLEFGEKEGT 723
Query: 299 VKRWPEAISNENAAKHEAICEALWPPPNLESLEIAGFRGRKMMLSTNWM--ASLNMLKKL 356
+ + EAL P PNL+SL I + R+ NWM +SL LK L
Sbjct: 724 ----------------KGVAEALQPHPNLKSLGIVDYGDREW---PNWMMGSSLAQLKIL 764
Query: 357 RLLNCPTCEIMPPLGQLPSLEILLIKDMTSVERVGDESLGIANGDHGAPSSSSVNNIAFP 416
L C C +PPLGQLP LE L I M V+ +G E LG SSS+V FP
Sbjct: 765 HLWFCKRCPCLPPLGQLPVLEKLYIWGMDGVKYIGSEFLG---------SSSTV----FP 811
Query: 417 KLKELEFSGLQEWEDWDFR-KEDITIMPQINSLSIYGCHKLKSLPDQLLQSSTLKTLRIN 475
KLKEL SGL E + W+ + KE+ +IMP +N L + GC KL+ LPD +LQ + L+ L I
Sbjct: 812 KLKELAISGLVELKQWEIKEKEERSIMPCLNHLIMRGCPKLEGLPDHVLQRTPLQKLDIA 871
Query: 476 RCRVLEEHFKK----DRSKISHIPDIQI-YER 502
+L+ ++K DR KISHIP++++ Y R
Sbjct: 872 GSPILKRRYRKDIGEDRHKISHIPEVEVEYSR 903
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359482792|ref|XP_002268589.2| PREDICTED: putative disease resistance protein RGA4-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 309 bits (792), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 207/507 (40%), Positives = 295/507 (58%), Gaps = 62/507 (12%)
Query: 2 EMEMIAEGYFDYLATRSLFQEFQRDEEGIVKRCKMHDIVHDFALFLNKKECAAVEVEGVE 61
EMEM+ YF+YLA RS FQ+F++D++G + RCKMHDIVHDFA FL + EC VEV+ +
Sbjct: 462 EMEMVGRTYFEYLAARSFFQDFEKDDDGNIIRCKMHDIVHDFAQFLTQNECFIVEVDNQK 521
Query: 62 EPLLLINTCPEKLRHLMLVLGYEAPSLVSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFD 121
+ + + +K+RH LV+ P+ S N L +L+ + VL+ + +
Sbjct: 522 KGSM--DLFFQKIRHATLVVRESTPNFASTCNMKNLHTLLAKKAFDS-----RVLEALGN 574
Query: 122 QLTCLRALRIEGTDNWELEEDQTNEILNGVEKLIHLRYLKLNL---VGDLPEKCCELLNL 178
LTCLRAL + + N +E E+ V KLIHLRYL L+L + +LPE C+L NL
Sbjct: 575 -LTCLRALDL--SRNRLIE-----ELPKEVGKLIHLRYLNLSLCYSLRELPETICDLYNL 626
Query: 179 QTLELENSSHFKRFPQGIGKLINLRHLIFTEDLLEYMPKGIEKLTSLRTLSEFVVASGGG 238
QTL ++ ++ PQ +GKLINLRHL L+ +PKGI +L+SL+TL F+V+S
Sbjct: 627 QTLNIQGCI-IRKLPQAMGKLINLRHLENYNTRLKGLPKGIGRLSSLQTLDVFIVSS--- 682
Query: 239 RYGSEACKLEGLRHLNHLRGSLKVRGLGNVADVDEVKNAHLEKKKNLVRLILRFKDIDKA 298
+G++ C++ LR+LN+LRG L ++GL V D E + A L+ K L RL L+F
Sbjct: 683 -HGNDECQIGDLRNLNNLRGRLSIQGLDEVKDAGEAEKAELKNKVYLQRLELKF------ 735
Query: 299 VKRWPEAISNENAAKHEAICEALWPPPNLESLEIAGFRGRKMMLSTNWM--ASLNMLKKL 356
E K + EAL P PNL+SL+I + R+ NWM +SL LK L
Sbjct: 736 --------GGEEGTK--GVAEALQPHPNLKSLDIFNYGDREW---PNWMMGSSLAQLKIL 782
Query: 357 RLLNCPTCEIMPPLGQLPSLEILLIKDMTSVERVGDESLGIANGDHGAPSSSSVNNIAFP 416
L C C +PPLGQLP LE L I +M V+ +G E LG SSS+V FP
Sbjct: 783 HLRFCIRCPCLPPLGQLPILEELGILNMHGVQYIGSEFLG---------SSSTV----FP 829
Query: 417 KLKELEFSGLQEWEDWDFR-KEDITIMPQINSLSIYGCHKLKSLPDQLLQSSTLKTLRIN 475
KLK+L S ++E + W+ + KE+ +IMP +N L++ C KL+ LPD +LQ + L+ L I
Sbjct: 830 KLKKLRISNMKELKQWEIKEKEERSIMPCLNDLTMLACPKLEGLPDHMLQRTPLQKLYIK 889
Query: 476 RCRVLEEHFKK----DRSKISHIPDIQ 498
+LE ++K D KISHIP+++
Sbjct: 890 YSPILERRYRKDIGEDGHKISHIPEVK 916
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359482790|ref|XP_002268671.2| PREDICTED: putative disease resistance protein RGA4-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 304 bits (778), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 208/512 (40%), Positives = 287/512 (56%), Gaps = 63/512 (12%)
Query: 2 EMEMIAEGYFDYLATRSLFQEFQRDEEGIVKRCKMHDIVHDFALFLNKKECAAVEVEGVE 61
EMEM+ YF+YLA RS FQ+F++D++G + CKMHDIVHDFA FL EC VEV+ +
Sbjct: 463 EMEMVGRTYFEYLAARSFFQDFEKDDDGNIIHCKMHDIVHDFAQFLTLNECFIVEVDNQK 522
Query: 62 EPLLLINTCPEKLRHLMLVLGYEAPSLVSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFD 121
+ + + +K+RH LV+ P+ S N L +L+ + VL+ +
Sbjct: 523 KGSM--DLFFQKIRHATLVVRESTPNFASTCNMKNLHTLLAKRAFDS-----RVLEAL-G 574
Query: 122 QLTCLRALRIEGTDNWELEEDQTNEILNGVEKLIHLRYLKLNLVG---DLPEKCCELLNL 178
LTCLRAL + E E+ V KLIHLRYL L+ +LPE C+L NL
Sbjct: 575 HLTCLRALDLRSNQLIE-------ELPKEVGKLIHLRYLNLSYCDSLRELPETICDLYNL 627
Query: 179 QTLELENSSHFKRFPQGIGKLINLRHL-IFTEDLLEYMPKGIEKLTSLRTLSEFVVASGG 237
QTL ++ S ++ PQ +GKLINLRHL + D L+ +PKGI +L+SL+TL F+V+S
Sbjct: 628 QTLNIQACSRLQKLPQAMGKLINLRHLENYDADDLQGLPKGIGRLSSLQTLDVFIVSS-- 685
Query: 238 GRYGSEACKLEGLRHLNHLRGSLKVRGLGNVADVDEVKNAHLEKKKNLVRLILRFKDIDK 297
+G++ C++E LR+LN+LRG L ++GL V D E + A L+ + +L RL L F
Sbjct: 686 --HGNDECQIEDLRNLNNLRGRLSIQGLDEVKDAGEAEKAELQNRVHLQRLTLEF----- 738
Query: 298 AVKRWPEAISNENAAKHEAICEALWPPPNLESLEIAGFRGRKMMLSTNWM--ASLNMLKK 355
E K + EAL P PNL+ L I + R+ NWM +SL LK
Sbjct: 739 ---------GGEEGTK--GVAEALQPHPNLKFLCIIRYGDREW---PNWMMGSSLAQLKI 784
Query: 356 LRLLNCPTCEIMPPLGQLPSLEILLIKDMTSVERVGDESLGIANGDHGAPSSSSVNNIAF 415
L L C C +PPLGQLP LE L I M ++ +G E LG SSS+V F
Sbjct: 785 LHLRFCIRCPCLPPLGQLPVLEELGICFMYGLKYIGSEFLG---------SSSTV----F 831
Query: 416 PKLKELEFSGLQEWEDWDFR-KEDITIMPQINSLSIYGCHKLKSLPDQLLQSSTLKTLRI 474
PKLK L GL E + W+ + KE+ +IMP +N+L C KL+ LPD +LQ + L+ L I
Sbjct: 832 PKLKGLYIYGLDELKQWEIKEKEERSIMPCLNALRAQHCPKLEGLPDHVLQRAPLQKLNI 891
Query: 475 NRCRVLEEHFKK----DRSKISHIPDIQIYER 502
VLE ++K D KISHIP+++ Y R
Sbjct: 892 KYSPVLERRYRKDIGEDGHKISHIPEVE-YSR 922
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147825450|emb|CAN71072.1| hypothetical protein VITISV_000086 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 303 bits (777), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 203/508 (39%), Positives = 289/508 (56%), Gaps = 57/508 (11%)
Query: 2 EMEMIAEGYFDYLATRSLFQEFQRDEEGIVKRCKMHDIVHDFALFLNKKECAAVEVEGVE 61
EMEM+ YF+YLA RS FQ+F++D++G + CKMHDIVHDFA FL + EC VEV+ +
Sbjct: 462 EMEMVGRTYFEYLAARSFFQDFEKDDDGNIICCKMHDIVHDFAQFLTQNECFIVEVDNQK 521
Query: 62 EPLLLINTCPEKLRHLMLVLGYEAPSLVSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFD 121
+ + + +K+RH LV+ P+ S N L +L+ B+ +L L +
Sbjct: 522 KGSM--DLFFQKIRHATLVVRESTPNFASTCNMKNLHTLLAKEEF-BISXVLEALXNLLR 578
Query: 122 QLTCLRALRIEGTDNWELEEDQTNEILNGVEKLIHLRYLKLNL---VGDLPEKCCELLNL 178
LTCLRAL + + N +E E+ V KLIHLRYL L+L + +LPE C+L NL
Sbjct: 579 HLTCLRALDL--SRNRLIE-----ELPKEVGKLIHLRYLNLSLCYRLRELPETICDLYNL 631
Query: 179 QTLELENSSHFKRFPQGIGKLINLRHL-IFTEDLLEYMPKGIEKLTSLRTLSEFVVASGG 237
QTL +E S ++ PQ +GKLINLRHL L+ +PKGI +L+SL+TL F+V+S
Sbjct: 632 QTLNIEGCSSLQKLPQAMGKLINLRHLENCNTGSLKGLPKGIGRLSSLQTLDVFIVSS-- 689
Query: 238 GRYGSEACKLEGLRHLNHLRGSLKVRGLGNVADVDEVKNAHLEKKKNLVRLILRFKDIDK 297
+G++ C++ LR+LN+LRG L ++ L V D E + A L+ + + L L F +
Sbjct: 690 --HGNDECQIGDLRNLNNLRGGLSIQRLDEVKDAGEAEKAELKNRVHFQYLTLEFGKKEG 747
Query: 298 AVKRWPEAISNENAAKHEAICEALWPPPNLESLEIAGFRGRKMMLSTNWM--ASLNMLKK 355
+ + EAL P PNL+SL+I + R+ NWM +SL LK
Sbjct: 748 T----------------KGVAEALQPHPNLKSLDIFNYGDREW---PNWMMGSSLAQLKI 788
Query: 356 LRLLNCPTCEIMPPLGQLPSLEILLIKDMTSVERVGDESLGIANGDHGAPSSSSVNNIAF 415
L + NC C +P LGQLP LE L I M V+ +G E LG SSS+V F
Sbjct: 789 LEIGNCRRCPCLPLLGQLPVLEKLDIWGMDGVKYIGSEFLG---------SSSTV----F 835
Query: 416 PKLKELEFSGLQEWEDWDFR-KEDITIMPQINSLSIYGCHKLKSLPDQLLQSSTLKTLRI 474
PKLKEL S + E + W+ + KE+ +IMP +N L C KL+ LPD +LQ + L+ L I
Sbjct: 836 PKLKELNISRMDELKQWEIKGKEERSIMPCLNHLRTEFCPKLEGLPDHVLQRTPLQKLYI 895
Query: 475 NRCRVLEEHFKK----DRSKISHIPDIQ 498
+LE ++K DR KISHIP+++
Sbjct: 896 IDSPILERRYRKDIGEDRHKISHIPEVK 923
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359482784|ref|XP_002269044.2| PREDICTED: putative disease resistance protein RGA4-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 298 bits (763), Expect = 6e-78, Method: Compositional matrix adjust.
Identities = 206/509 (40%), Positives = 285/509 (55%), Gaps = 61/509 (11%)
Query: 2 EMEMIAEGYFDYLATRSLFQEFQRDEEGIVKRCKMHDIVHDFALFLNKKECAAVEVEGVE 61
EMEM+ YF+YLA RS FQ+F++D + + RCKMHDIVHDFA FL + EC VEV+ +
Sbjct: 462 EMEMVGREYFEYLAARSFFQDFEKDGDDDIIRCKMHDIVHDFAQFLTQNECFVVEVDNQK 521
Query: 62 EPLLLINTCPEKLRHLMLVLGYEAPSLVSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFD 121
+ + + +K+ H LV+ + S N L +L+ D+ VL+ +
Sbjct: 522 KGSM--DLFFQKICHATLVVQESTLNFASTCNMKNLHTLLA---KSAFDSR--VLEAL-G 573
Query: 122 QLTCLRALRIEGTDNWELEEDQTNEILNGVEKLIHLRYLKLNL---VGDLPEKCCELLNL 178
LTCLRAL + +W E+ V KLIHLRYL L+ + +LPE C+L NL
Sbjct: 574 HLTCLRALDL----SW---NQLIEELPKEVGKLIHLRYLDLSRCQSLRELPETICDLYNL 626
Query: 179 QTLELENSSHFKRFPQGIGKLINLRHLIFTEDLLEYMPKGIEKLTSLRTLSEFVVASGGG 238
QTL ++ ++ PQ +GKLINLRHL L+ +PKGI +L+SL+TL F+V+S
Sbjct: 627 QTLNIQYCISLQKLPQAMGKLINLRHLENYTRSLKGLPKGIGRLSSLQTLDVFIVSS--- 683
Query: 239 RYGSEACKLEGLRHLNHLRGSLKVRGLGNVADVDEVKNAHLEKKKNLVRLILRFKDIDKA 298
+G++ C++ LR+LN+LRG L ++GL V D E + A L+ + +L RL L F
Sbjct: 684 -HGNDECQIGDLRNLNNLRGGLSIQGLDEVKDAGEAEKAELKNRVSLHRLALVF------ 736
Query: 299 VKRWPEAISNENAAKHEAICEALWPPPNLESLEIAGFRGRKMMLSTNWM--ASLNMLKKL 356
E K + EAL P PNL+SL I G+ R+ NWM +SL LK L
Sbjct: 737 --------GGEEGTK--GVAEALQPHPNLKSLCIYGYGDREW---PNWMMGSSLAQLKIL 783
Query: 357 RLLNCPTCEIMPPLGQLPSLEILLIKDMTSVERVGDESLGIANGDHGAPSSSSVNNIAFP 416
+ NC C +PPLGQLP LE L+I M V +G E LG SSS+V FP
Sbjct: 784 EIGNCRRCPCLPPLGQLPVLEKLVIWKMYGVIYIGSEFLG---------SSSTV----FP 830
Query: 417 KLKELEFSGLQEWEDWDFR-KEDITIMPQINSLSIYGCHKLKSLPDQLLQSSTLKTLRIN 475
KLKEL GL E + W+ + KE+ +IMP +N L C KL+ LPD +LQ + L+ L I
Sbjct: 831 KLKELRIFGLDELKQWEIKEKEERSIMPCLNHLRTEFCPKLEGLPDHVLQRTPLQKLYIE 890
Query: 476 RCRVLEEHFKK----DRSKISHIPDIQIY 500
+L+ + K DR KISHIP++ Y
Sbjct: 891 GSPILKRRYGKDIGEDRHKISHIPEVVEY 919
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224110248|ref|XP_002333128.1| cc-nbs-lrr resistance protein [Populus trichocarpa] gi|222834939|gb|EEE73388.1| cc-nbs-lrr resistance protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 295 bits (756), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 202/522 (38%), Positives = 288/522 (55%), Gaps = 59/522 (11%)
Query: 2 EMEMIAEGYFDYLATRSLFQEFQRDE-EGIVKRCKMHDIVHDFALFLNKKECAAVEVEGV 60
+ME++ E YF LA RS FQ+F+ D EG+ + KMHDIVHDFA ++ K EC V+V +
Sbjct: 404 DMELVGERYFHVLAARSFFQDFETDRFEGM--KFKMHDIVHDFAQYMTKNECLTVDVNTL 461
Query: 61 EEPLLLINTCPEKLRHLMLVLGYEAPSLVSIFNAIKLRSLILFYWIPNLDAMLPVLKGIF 120
+ T E++RHL +++ E VSI A LRSL++ P+ A LP L F
Sbjct: 462 GGAT--VETSIERVRHLSMMVSEETSFPVSIHKAKGLRSLLIDTRDPSFGAALPDL---F 516
Query: 121 DQLTCLRALRIEGTDNWELEEDQTNEILNGVEKLIHLRYLKLNLVGDL---PEKCCELLN 177
QLTC+R+L +L EI N V KLIHLR++ L G+L PE C+L N
Sbjct: 517 KQLTCIRSL--------DLSASSIKEIPNEVGKLIHLRHVNLARCGELESLPETMCDLCN 568
Query: 178 LQTLELENSSHFKRFPQGIGKLINLRHLIFTEDLLEYMPKGIEKLTSLRTLSEFVVASGG 237
LQ+L++ K P IGKLI LRHL ++++PKGIE++T LRTL F V GG
Sbjct: 569 LQSLDVTWCRSLKELPNAIGKLIKLRHLRIYRSGVDFIPKGIERITCLRTLDVFKVC-GG 627
Query: 238 GRYGSEACKLEGLRHLNHLRGSLKVRGL-GNVADVDEVKNAHLEKKKNLVRLILRFKDID 296
G S+A L L++LNH+ GS +R L G + D + A L+ KK L+RL L F
Sbjct: 628 GENESKAANLRELKNLNHIGGSFSIRNLGGGIEDASDAAEAQLKNKKRLLRLELGFD--- 684
Query: 297 KAVKRWPEAISNENAAKHEAICEALWPPPNLESLEIAGFRGRKMMLSTNWMASLNMLKKL 356
+ EN + EAL PP +LE L I+ + G + +WM +L L++L
Sbjct: 685 ---------YNQENG----ILIEALQPPSDLECLTISSYGGLDL---PHWMMTLTRLQEL 728
Query: 357 RLLNCPTCEIMPPLGQLPSLEILLIKDMTSVERVGDESLGIANGDHGAPSSSSVNNI-AF 415
RL +C E++ PLG LP+LEIL++ + V R+ LGI ++ + + + + AF
Sbjct: 729 RLDDCTNLEVLRPLGGLPNLEILVLSSL-KVRRLDAGFLGIEKDENASINEGEIARVTAF 787
Query: 416 PKLKELEFSGLQEWEDWD-----FRKED------ITIMPQINSLSIYGCHKLKSLPDQLL 464
PKLK L+F L E E+W+ +ED I+IMPQ+ L I C L++LPD +L
Sbjct: 788 PKLKRLDFRHLLEVEEWEGIERRVGEEDVNTTSIISIMPQLQYLRIINCPLLRALPDYVL 847
Query: 465 QSSTLKTLRINRCRVLEEHFKK-----DRSKISHIPDIQIYE 501
++ L+ L I C +L + + K D KISHIP+ Y+
Sbjct: 848 -AAPLQELDIRWCTILRKRYGKEEMGEDWQKISHIPNSYFYD 888
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147843549|emb|CAN79463.1| hypothetical protein VITISV_000507 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 295 bits (754), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 194/495 (39%), Positives = 275/495 (55%), Gaps = 49/495 (9%)
Query: 2 EMEMIAEGYFDYLATRSLFQEFQRDEEGIVKRCKMHDIVHDFALFLNKKECAAVEVEGVE 61
EMEM+ YF+YLA RS FQ+F++D + + RCKMHDIVH FA FL K EC + EG
Sbjct: 493 EMEMVGREYFEYLAARSFFQDFEKDGDDNIIRCKMHDIVHSFAQFLTKNECCIMNEEG-- 550
Query: 62 EPLLLINTCPEKLRHLMLVLGYEAPSLVSIFNAIKLRSLIL-FYWIPNLDAMLPVLKGIF 120
T +K+RH L+ P+ VS + LR+L+L F + ++D LP +F
Sbjct: 551 ----RTKTSFQKIRHATLIGQQRHPNFVSTYKMKNLRTLLLEFAVVSSIDEALP---NLF 603
Query: 121 DQLTCLRALRIEGTDNWELEEDQTNEILNGVEKLIHLRYLKLNL---VGDLPEKCCELLN 177
LTCLR L + + E+ +EKLIHL+YL L+ + +LPE C+L N
Sbjct: 604 QHLTCLRVLDLARNLS-------RKELPKAIEKLIHLKYLNLSHCHELRELPEAICDLYN 656
Query: 178 LQTLELENSSHFKRFPQGIGKLINLRHLI-FTEDLLEYMPKGIEKLTSLRTLSEFVVASG 236
LQTL + + PQ +GKLINLRHL F LL+ +PKGI +L SL+TL +F V+S
Sbjct: 657 LQTLNIRGCDSLVQLPQAMGKLINLRHLQNFLTILLKGLPKGISRLNSLQTLEKFTVSSD 716
Query: 237 GGRYGSEACKLEGLRHLNHLRGSLKVRGLGNVADVDEVKNAHLEKKKNLVRLILRF--KD 294
G C + L +L++LRG L++RGL NV + E + A+L+ K ++ L L F ++
Sbjct: 717 ----GHNECNIGDLGNLSNLRGELEIRGLQNVENAREAREANLKNKIHIHHLTLVFDPQE 772
Query: 295 IDKAVKRWPEAISN----ENAAKHEAICEALWPPPNLESLEIAGFRGRKMMLSTNWM--A 348
V P + S E +++ EAL P PNL+SL I G+ + WM +
Sbjct: 773 GTNYVVGAPRSYSTNLLPEVKKGPKSVVEALQPHPNLKSLCIRGYGDTEW---PGWMMRS 829
Query: 349 SLNMLKKLRLLNCPTCEIMPPLGQLPSLEILLIKDMTSVERVGDESLGIANGDHGAPSSS 408
SL LK L L C C MPPLG+LP LE L IK + V+ +G E L
Sbjct: 830 SLTQLKNLELSCCSDCLCMPPLGELPVLETLEIKGVERVKHIGGEFL------------R 877
Query: 409 SVNNIAFPKLKELEFSGLQEWEDWD-FRKEDITIMPQINSLSIYGCHKLKSLPDQLLQSS 467
S + IAFPKLK+L F ++EWE W+ +E IM ++ L I+ C KL+ LPD++LQ +
Sbjct: 878 SSSTIAFPKLKKLTFRNMKEWEKWEVIEEEKRLIMSCLSYLGIHKCPKLEGLPDRVLQRT 937
Query: 468 TLKTLRINRCRVLEE 482
L+ L I + +L++
Sbjct: 938 PLQELIITKSGILQQ 952
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224122712|ref|XP_002318907.1| cc-nbs-lrr resistance protein [Populus trichocarpa] gi|222859580|gb|EEE97127.1| cc-nbs-lrr resistance protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 290 bits (743), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 202/506 (39%), Positives = 284/506 (56%), Gaps = 50/506 (9%)
Query: 2 EMEMIAEGYFDYLATRSLFQEFQRDE-EGIVKRCKMHDIVHDFALFLNKKECAAVEVEGV 60
+ME++ E YF LA RS FQ+F+ D EG+ + KMHDIVHDFA ++ K EC V+V +
Sbjct: 468 DMELVGERYFHVLAARSFFQDFETDIFEGM--KFKMHDIVHDFAQYMTKNECLTVDVNTL 525
Query: 61 EEPLLLINTCPEKLRHLMLVLGYEAPSLVSIFNAIKLRSLILFYWIPNLDAMLPVLKGIF 120
+ T E++RHL +++ E VSI A LRSL++ P+L A LP L F
Sbjct: 526 GGAT--VETSIERVRHLSMMVSEETSFPVSIHKAKGLRSLLIDTRDPSLGAALPDL---F 580
Query: 121 DQLTCLRALRIEGTDNWELEEDQTNEILNGVEKLIHLRYLKLNLVGDL---PEKCCELLN 177
QLTC+R+L + + EI N V KLIHLR++ L G+L PE C+L N
Sbjct: 581 KQLTCIRSLNLSAS--------SIKEIPNEVGKLIHLRHVNLARCGELESLPETMCDLCN 632
Query: 178 LQTLELENSSHFKRFPQGIGKLINLRHLIFTEDLLEYMPKGIEKLTSLRTLSEFVVASGG 237
LQ+L++ K P IGKLI LRHL ++++PKGIE++T LRTL F V GG
Sbjct: 633 LQSLDVTWCRSLKELPNAIGKLIKLRHLRIYRSGVDFIPKGIERITCLRTLDVFKVC-GG 691
Query: 238 GRYGSEACKLEGLRHLNHLRGSLKVRGL-GNVADVDEVKNAHLEKKKNLVRLILRFKDID 296
G S+A L L++LNH+ GSL +R L G + D + A L+ KK L RL L F D +
Sbjct: 692 GENESKAANLRELKNLNHIGGSLNIRNLGGGIEDASDAAEAQLKNKKRLRRLELVF-DRE 750
Query: 297 KAVKRWPEAISNENAAKHEAICEALWPPPNLESLEIAGFRGRKMMLSTNWMASLNMLKKL 356
K E A ++ EAL PP NLE L I+ + G + NWM +L L L
Sbjct: 751 K----------TELQANEGSLIEALQPPSNLEYLTISSYGGFDL---PNWMMTLTRLLAL 797
Query: 357 RLLNCPTCEIMPPLGQLPSLEILLIKDMTSVERVGDESLGIANGDHGAPSSSSVNNI-AF 415
L +C E++PPLG+LP+LE L ++ + V R+ LGI ++ + + + + AF
Sbjct: 798 ELHDCTKLEVLPPLGRLPNLERLALRSL-KVRRLDAGFLGIEKDENASINEGEIARVTAF 856
Query: 416 PKLKELEFSGLQEWEDWDFR---KED-----ITIMPQINSLSIYGCHKLKSLPDQLLQSS 467
PKLK LE ++EW+ + R +ED I+IMPQ+ L+I+ C L++LPD +L ++
Sbjct: 857 PKLKILEIWNIKEWDGIERRSVGEEDATTTSISIMPQLRQLTIHNCPLLRALPDYVL-AA 915
Query: 468 TLKTLRINRCRVLEEHFKKDRSKISH 493
L+ L I C L E D KISH
Sbjct: 916 PLQELYIGGCPNLGE----DWQKISH 937
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224122696|ref|XP_002318903.1| cc-nbs-lrr resistance protein [Populus trichocarpa] gi|222859576|gb|EEE97123.1| cc-nbs-lrr resistance protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 290 bits (743), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 204/520 (39%), Positives = 287/520 (55%), Gaps = 51/520 (9%)
Query: 2 EMEMIAEGYFDYLATRSLFQEFQRDE-EGIVKRCKMHDIVHDFALFLNKKECAAVEVEGV 60
+ME++ E YF LA RS FQ+F+ DE EG+ KMHDIVHDFA ++ K EC V+V +
Sbjct: 417 DMELVGEQYFQVLAARSFFQDFETDEDEGMT--FKMHDIVHDFAQYMTKNECLTVDVNTL 474
Query: 61 EEPLLLINTCPEKLRHLMLVLGYEAPSLVSIFNAIKLRSLILFYWIPNLDAMLPVLKGIF 120
+ T E++RHL ++L E VSI A LRSL++ P+L A LP L F
Sbjct: 475 GGAT--VETSIERVRHLSMMLPNETSFPVSIHKAKGLRSLLIDTRDPSLGAALPDL---F 529
Query: 121 DQLTCLRALRIEGTDNWELEEDQTNEILNGVEKLIHLRYLKLNL---VGDLPEKCCELLN 177
QLTC+R+L L Q EI N V KLIHLR+L L + LPE C+L N
Sbjct: 530 KQLTCIRSL--------NLSRSQIKEIPNEVGKLIHLRHLNLAWCVELESLPETICDLCN 581
Query: 178 LQTLELENSSHFKRFPQGIGKLINLRHLIFTEDLLEYMPKGIEKLTSLRTLSEFVVASGG 237
LQ+L++ K P+ IGKLI LRHL + ++PKGIE++T LRTL +F V GG
Sbjct: 582 LQSLDVTWCRSLKELPKAIGKLIKLRHLWIDSSGVAFIPKGIERITCLRTLDKFTVC-GG 640
Query: 238 GRYGSEACKLEGLRHLNHLRGSLKVRGLGNVADVDEVKNAHLEKKKNLVRLILRFKDIDK 297
G S+A L L++LNH+ GSL++ + ++ +V +V +A L KK+ L+ L FK +D
Sbjct: 641 GENESKAANLRELKNLNHIGGSLRIDKVRDIENVRDVVDALLNKKR-LLCLEWNFKGVDS 699
Query: 298 AVKRWPEAISNENAAKHEAICEALWPPPNLESLEIAGFRGRKMMLSTNWMASLNMLKKLR 357
+ + E ++ E L PP +LE+L I G+ G + NWM +L L+ L
Sbjct: 700 IL------VKTELPEHEGSLIEVLRPPSDLENLTIRGYGGLDL---PNWMMTLTRLRMLS 750
Query: 358 LLNCPTCEIMPPLGQLPSLEILLIKDMTSVERVGDESLGIANGDHGAPSSSSVNNIAFPK 417
L C E++PPLG+LP+LE LL+ V R+ LG+ ++ + AFPK
Sbjct: 751 LGPCENVEVLPPLGRLPNLERLLLF-FLKVRRLDAGFLGVEKDENEGEIARVT---AFPK 806
Query: 418 LKELEFSGLQEWEDWD-----FRKED------ITIMPQINSLSIYGCHKLKSLPDQLLQS 466
LK L+E E+WD +ED I+IMPQ+ L I C L++LPD +L +
Sbjct: 807 LKSFRIRYLEEIEEWDGIERRVGEEDANTTSIISIMPQLQYLGIRKCPLLRALPDYVL-A 865
Query: 467 STLKTLRINRC-----RVLEEHFKKDRSKISHIPDIQIYE 501
+ L+ L I C R EE +D KISHIP+I ++
Sbjct: 866 APLQELEIMGCPNLTNRYGEEEMGEDWQKISHIPNIYFHD 905
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 625 | ||||||
| TAIR|locus:2091672 | 1054 | AT3G14470 [Arabidopsis thalian | 0.673 | 0.399 | 0.254 | 7.5e-23 | |
| TAIR|locus:2091662 | 1424 | AT3G14460 [Arabidopsis thalian | 0.604 | 0.265 | 0.288 | 7.7e-22 | |
| TAIR|locus:504956182 | 1049 | AT1G58848 [Arabidopsis thalian | 0.48 | 0.285 | 0.244 | 6.1e-08 | |
| TAIR|locus:2826978 | 1049 | AT1G59218 [Arabidopsis thalian | 0.48 | 0.285 | 0.244 | 6.1e-08 | |
| TAIR|locus:2025916 | 906 | AT1G59780 "AT1G59780" [Arabido | 0.129 | 0.089 | 0.363 | 1.3e-08 | |
| TAIR|locus:2152536 | 908 | AT5G48620 [Arabidopsis thalian | 0.464 | 0.319 | 0.258 | 2.7e-08 | |
| TAIR|locus:2176486 | 908 | RPP8 "RECOGNITION OF PERONOSPO | 0.129 | 0.089 | 0.375 | 6.3e-08 | |
| TAIR|locus:504956186 | 1138 | AT1G58602 [Arabidopsis thalian | 0.446 | 0.245 | 0.268 | 8.7e-08 | |
| TAIR|locus:504956184 | 1017 | AT1G58807 "AT1G58807" [Arabido | 0.136 | 0.083 | 0.359 | 4.9e-07 | |
| TAIR|locus:2827038 | 1017 | AT1G59124 "AT1G59124" [Arabido | 0.136 | 0.083 | 0.359 | 4.9e-07 |
| TAIR|locus:2091672 AT3G14470 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 288 (106.4 bits), Expect = 7.5e-23, Sum P(2) = 7.5e-23
Identities = 119/467 (25%), Positives = 197/467 (42%)
Query: 3 MEMIAEGYFDYLATRSLFQEFQRDEEGIVKRCKMHDIVHDFALFLNKKECAAXXXXXXXX 62
+E + YF L +RSL Q+ + R MHD +++ A F A+
Sbjct: 466 LEELGNEYFSELESRSLLQKTKT-------RYIMHDFINELAQF------ASGEFSSKFE 512
Query: 63 XXXXINTCPEKLRHLMLVL-GYEAPSLVSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFD 121
+ E+ R+L + Y P +K L + N + + + +
Sbjct: 513 DGCKLQVS-ERTRYLSYLRDNYAEPMEFEALREVKFLRTFLPLSLTNSSRSCCLDQMVSE 571
Query: 122 QLT-CLRALRIEGTDNWELEEDQTNEILNGVEKLIHLRYLKLNL--VGDLPEKCCXXXXX 178
+L L LR+ ++++ + N + H R+L L+ + LP+ C
Sbjct: 572 KLLPTLTRLRVLSLSHYKIARLPPDFFKN----ISHARFLDLSRTELEKLPKSLCYMYNL 627
Query: 179 XXXXXXXSSHFKRFPQGIGKLINLRHLIFTEDLLEYMPKGIEKLTSLRTLSEFVVASGGG 238
S K P I LINLR+L L MP+ +L SL+TL+ F V++ G
Sbjct: 628 QTLLLSYCSSLKELPTDISNLINLRYLDLIGTKLRQMPRRFGRLKSLQTLTTFFVSASDG 687
Query: 239 RYGSEACKLEGLRHLNHLRGSLKVRGLGNVADVDEVKNAHLEKKKNLVRLILRFKDIDKA 298
S +L GL L+ G LK+ L V DV + A+L KK+L + ++ +
Sbjct: 688 ---SRISELGGLHDLH---GKLKIVELQRVVDVADAAEANLNSKKHLREIDFVWRTGSSS 741
Query: 299 VKRWPEAISNENAAKHEA-ICEALWPPPNLESLEIAGFRGRKMMLSTNWMA--SLNMLKK 355
E +N + ++EA + E L P ++E L I ++GR+ +W++ S + +
Sbjct: 742 ----SENNTNPHRTQNEAEVFEKLRPHRHIEKLAIERYKGRRF---PDWLSDPSFSRIVC 794
Query: 356 LRLLNCPTCEIMPPLGQLPSLEILLIKDMTSVERVGDESLGIANGDHGAPSSSSVNNIAF 415
+RL C C +P LGQLP L+ L I M ++ +G + D F
Sbjct: 795 IRLRECQYCTSLPSLGQLPCLKELHISGMVGLQSIGRK---FYFSDQQLRDQDQQ---PF 848
Query: 416 PKLKELEFSGLQEWEDW-DFRKEDITIMPQINSLSIYGCHKLK-SLP 460
L+ L F L +W++W D R + P + L I C +L +LP
Sbjct: 849 RSLETLRFDNLPDWQEWLDVRVTRGDLFPSLKKLFILRCPELTGTLP 895
|
|
| TAIR|locus:2091662 AT3G14460 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 302 (111.4 bits), Expect = 7.7e-22, Sum P(2) = 7.7e-22
Identities = 119/412 (28%), Positives = 180/412 (43%)
Query: 3 MEMIAEGYFDYLATRSLFQEFQRDEEGIVKRCKMHDIVHDFALFLNKKECAAXXXXXXXX 62
+E I Y L +S FQ V MHD+++D A ++ C
Sbjct: 458 LEDIGNDYLGDLVAQSFFQRLDITMTSFV----MHDLMNDLAKAVSGDFC-------FRL 506
Query: 63 XXXXINTCPEKLRHLMLVLGYEAPSLV--SIFNAIKLRSLILFYWIPNLDAMLPVLKGIF 120
I P RH S+ SI A LR+++ F +L+++ K +
Sbjct: 507 EDDNIPEIPSTTRHFSFSRSQCDASVAFRSICGAEFLRTILPFNSPTSLESLQLTEKVLN 566
Query: 121 DQLTCLRALRIEGTDNWELEEDQTNEILNGVEKLIHLRYLKLNL--VGDLPEKCCXXXXX 178
L L LRI ++++ + L G+ KL LRYL L+ + +LPE C
Sbjct: 567 PLLNALSGLRILSLSHYQITN--LPKSLKGL-KL--LRYLDLSSTKIKELPEFVCTLCNL 621
Query: 179 XXXXXXXSSHFKRFPQGIGKLINLRHLIFTEDLLEYMPKGIEKLTSLRTLSEFVVASGGG 238
P+ I +LINLR L L MP GI+KL SL+ LS FV+ G
Sbjct: 622 QTLLLSNCRDLTSLPKSIAELINLRLLDLVGTPLVEMPPGIKKLRSLQKLSNFVI----G 677
Query: 239 RYGSEACKLEGLRHLNHLRGSLKVRGLGNVADVDEVKNAHLEKKKNLVRLILRFKDIDKA 298
R L L+ L+HLRG+L++ L NVA E K+A L++K L LIL++ K
Sbjct: 678 RLSGAG--LHELKELSHLRGTLRISELQNVAFASEAKDAGLKRKPFLDGLILKWTV--KG 733
Query: 299 VKRWPEAISNENAAKHEAICEALWPPPNLESLEIAGFRGRKMMLSTNWMASLNM--LKKL 356
P + N A + + L P P+L++ I ++G W+ + + +
Sbjct: 734 SGFVPGSF-NALACDQKEVLRMLEPHPHLKTFCIESYQGGAF---PKWLGDSSFFGITSV 789
Query: 357 RLLNCPTCEIMPPLGQLPSLEILLIKDMTSVERVGDESLGIANGDHGAPSSS 408
L +C C +PP+GQLPSL+ L I+ +++VG + N G P S
Sbjct: 790 TLSSCNLCISLPPVGQLPSLKYLSIEKFNILQKVGLDFFFGENNSRGVPFQS 841
|
|
| TAIR|locus:504956182 AT1G58848 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 161 (61.7 bits), Expect = 6.1e-08, P = 6.1e-08
Identities = 78/319 (24%), Positives = 133/319 (41%)
Query: 191 RFPQGIGKLINLRHLIFTEDLLEYMPKGIEKLTSLRTLSEFVVASGGGRYGSEACKLEGL 250
+ IG+LI+LR+L + ++P + L L L+ ++ SG + +++ L
Sbjct: 601 KLASSIGQLIHLRYLNLKHAEVTHIPYSLGNLKLLIYLNLVILVSGSTLVPNVLKEMQQL 660
Query: 251 RHLNHLRGSLKVRGLGNVADVDEVKNAHLEKKKNLVRLILRFKDIDKAVKRWPEAISNEN 310
R+L +L + +G ++ LE KN +D+ V+ I
Sbjct: 661 RYL-----ALP-KDMGRKTKLELSNLVKLETLKNFSTKNCSLEDLRGMVRLRTLTIELRK 714
Query: 311 AAKHEAICEALWPPPNLESLEIAGFRGRKMMLSTNWMASLNMLKKLRL-LNCPTC---EI 366
E + ++ LESL I + LK L L L P +
Sbjct: 715 ETSLETLAASIGGLKYLESLTITDLGSEMRTKEAGIVFDFVYLKTLTLKLYMPRLSKEQH 774
Query: 367 MPP-LGQLPSLEILLIKD-MTSVERVGD-ESLGIANGDHGAPSSSSVNNIAFPKLKELEF 423
P L L L +D M +E++ + L + + FP+L++L
Sbjct: 775 FPSHLTTLYLQHCRLEEDPMPILEKLHQLKELELRRKSFSGKEMVCSSG-GFPQLQKLSI 833
Query: 424 SGLQEWEDWDFRKEDITIMPQINSLSIYGCHKLKSLPDQLLQSSTLKTLRINRCRVLEEH 483
GL+EWEDW K + + MP +++L I C KLK LPD+ L S L ++ + C LEE
Sbjct: 834 KGLEEWEDW---KVEESSMPVLHTLDIRDCRKLKQLPDEHLPSH-LTSISLFFC-CLEED 888
Query: 484 FKKDRSKISHIPDIQIYER 502
++ H+ ++Q+ R
Sbjct: 889 PMPTLERLVHLKELQLLFR 907
|
|
| TAIR|locus:2826978 AT1G59218 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 161 (61.7 bits), Expect = 6.1e-08, P = 6.1e-08
Identities = 78/319 (24%), Positives = 133/319 (41%)
Query: 191 RFPQGIGKLINLRHLIFTEDLLEYMPKGIEKLTSLRTLSEFVVASGGGRYGSEACKLEGL 250
+ IG+LI+LR+L + ++P + L L L+ ++ SG + +++ L
Sbjct: 601 KLASSIGQLIHLRYLNLKHAEVTHIPYSLGNLKLLIYLNLVILVSGSTLVPNVLKEMQQL 660
Query: 251 RHLNHLRGSLKVRGLGNVADVDEVKNAHLEKKKNLVRLILRFKDIDKAVKRWPEAISNEN 310
R+L +L + +G ++ LE KN +D+ V+ I
Sbjct: 661 RYL-----ALP-KDMGRKTKLELSNLVKLETLKNFSTKNCSLEDLRGMVRLRTLTIELRK 714
Query: 311 AAKHEAICEALWPPPNLESLEIAGFRGRKMMLSTNWMASLNMLKKLRL-LNCPTC---EI 366
E + ++ LESL I + LK L L L P +
Sbjct: 715 ETSLETLAASIGGLKYLESLTITDLGSEMRTKEAGIVFDFVYLKTLTLKLYMPRLSKEQH 774
Query: 367 MPP-LGQLPSLEILLIKD-MTSVERVGD-ESLGIANGDHGAPSSSSVNNIAFPKLKELEF 423
P L L L +D M +E++ + L + + FP+L++L
Sbjct: 775 FPSHLTTLYLQHCRLEEDPMPILEKLHQLKELELRRKSFSGKEMVCSSG-GFPQLQKLSI 833
Query: 424 SGLQEWEDWDFRKEDITIMPQINSLSIYGCHKLKSLPDQLLQSSTLKTLRINRCRVLEEH 483
GL+EWEDW K + + MP +++L I C KLK LPD+ L S L ++ + C LEE
Sbjct: 834 KGLEEWEDW---KVEESSMPVLHTLDIRDCRKLKQLPDEHLPSH-LTSISLFFC-CLEED 888
Query: 484 FKKDRSKISHIPDIQIYER 502
++ H+ ++Q+ R
Sbjct: 889 PMPTLERLVHLKELQLLFR 907
|
|
| TAIR|locus:2025916 AT1G59780 "AT1G59780" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 112 (44.5 bits), Expect = 1.3e-08, Sum P(3) = 1.3e-08
Identities = 32/88 (36%), Positives = 45/88 (51%)
Query: 415 FPKLKELEFSGLQEWEDWDFRKEDITIMPQINSLSIYGCHKLKSLPDQLLQSSTLKTLRI 474
FP L LE GL E+W + MP +++L I C KLK +PD L S+LK L I
Sbjct: 801 FPPLHRLEIWGLDALEEWIVEEGS---MPLLHTLHIVDCKKLKEIPDGLRFISSLKELAI 857
Query: 475 NRC-RVLEEHFKK---DRSKISHIPDIQ 498
+V ++ K D K+ H+P I+
Sbjct: 858 RTNEKVFQKKVSKGGEDYYKMQHVPLIR 885
|
|
| TAIR|locus:2152536 AT5G48620 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 139 (54.0 bits), Expect = 2.7e-08, Sum P(2) = 2.7e-08
Identities = 85/329 (25%), Positives = 140/329 (42%)
Query: 191 RFPQGIGKLINLRHLIFTEDLLEYMPKGIEKLTSLRTLSEFVVASGGGRYGSEACKLEGL 250
+ P IG LI+LR+L ++ ++P + L L L+ R ++ E +
Sbjct: 592 KLPSSIGGLIHLRYLSLYGAVVSHLPSTMRNLKLLLFLNL--------RVDNK----EPI 639
Query: 251 RHLNHLRGSLKVRGLGNVADVDEVKNAHLEKKKNLVRLIL------RFKDIDKAVKRWPE 304
N L+ L++R L ++D+ L NL L D+ + K
Sbjct: 640 HVPNVLKEMLELRYLSLPQEMDDKTKLELGDLVNLEYLWYFSTQHSSVTDLLRMTKLRNL 699
Query: 305 AISNENAAKHEAICEALWPPPNLESLEIAGFRGRKMMLSTNWMASLNM---LKKL----R 357
+S E + +L NLE L + F +M+ L+ LK+L R
Sbjct: 700 GVSLSERCNFETLSSSLRELRNLEMLNVL-FSPEIVMVDHMGEFVLDHFIHLKQLGLAVR 758
Query: 358 LLNCPTCEIMPP-LGQLPSLEILLIKD-MTSVERVGD-ESLGIANGDH-GAPSSSSVNNI 413
+ P PP L + + ++ +D M +E++ +S+ ++ G G S
Sbjct: 759 MSKIPDQHQFPPHLAHIHLVHCVMKEDPMPILEKLLHLKSVALSYGAFIGRRVVCSKGG- 817
Query: 414 AFPKLKELEFSGLQEWEDWDFRKEDITIMPQINSLSIYGCHKLKSLPDQLLQSSTLKTLR 473
FP+L L SG E E+W + MP + +L+I+ C KLK LPD L ++LK L+
Sbjct: 818 -FPQLCALGISGESELEEWIVEEGS---MPCLRTLTIHDCEKLKELPDGLKYITSLKELK 873
Query: 474 INRC-RVLEEHFK---KDRSKISHIPDIQ 498
I R +E +D K+ HIPD+Q
Sbjct: 874 IREMKREWKEKLVPGGEDYYKVQHIPDVQ 902
|
|
| TAIR|locus:2176486 RPP8 "RECOGNITION OF PERONOSPORA PARASITICA 8" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 118 (46.6 bits), Expect = 6.3e-08, Sum P(3) = 6.3e-08
Identities = 33/88 (37%), Positives = 47/88 (53%)
Query: 415 FPKLKELEFSGLQEWEDWDFRKEDITIMPQINSLSIYGCHKLKSLPDQLLQSSTLKTLRI 474
FP+L +E S E E+W + MP + +L+I C KLK LPD L ++LK L+I
Sbjct: 818 FPQLCVIEISKESELEEWIVEEGS---MPCLRTLTIDDCKKLKELPDGLKYITSLKELKI 874
Query: 475 NRC-RVLEEHFK---KDRSKISHIPDIQ 498
R +E +D K+ HIPD+Q
Sbjct: 875 EGMKREWKEKLVPGGEDYYKVQHIPDVQ 902
|
|
| TAIR|locus:504956186 AT1G58602 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 160 (61.4 bits), Expect = 8.7e-08, P = 8.7e-08
Identities = 88/328 (26%), Positives = 148/328 (45%)
Query: 196 IGKLINLRHLIFTEDLLEYMPKGIEKLTSLRTLSEFVVASGGGRYGSEACKLEGLRHLNH 255
IGKLI+LR+L + ++P + L L L+ + S + L G++ L +
Sbjct: 603 IGKLIHLRYLSLEYAEVTHIPYSLGNLKLLIYLNLHISLSSRSNFVPNV--LMGMQELRY 660
Query: 256 LR-GSLKVRG----LGNVADVDEV-----KNAHLEKKKNLVRLILRFKDIDKAVKRWPEA 305
L SL R L N+ ++ + KN+ LE + +VRL R I+
Sbjct: 661 LALPSLIERKTKLELSNLVKLETLENFSTKNSSLEDLRGMVRL--RTLTIE--------- 709
Query: 306 ISNENAAKHEAICEALWPPPNLESLEIAGFRGRKMMLSTNWMASLNMLKKLRLLNCPTCE 365
+ E + E + ++ LE LEI + + LK+LRL E
Sbjct: 710 LIEETSL--ETLAASIGGLKYLEKLEIDDLGSKMRTKEAGIVFDFVHLKRLRL------E 761
Query: 366 I-MPPLGQ---LPS-LEILLIKDMTSVER---VGDESLGIANGDHGAPSSSS----VNNI 413
+ MP L + PS L L ++ E + ++ L + + G S S ++
Sbjct: 762 LYMPRLSKEQHFPSHLTTLYLQHCRLEEDPMPILEKLLQLKELELGHKSFSGKKMVCSSC 821
Query: 414 AFPKLKELEFSGLQEWEDWDFRKEDITIMPQINSLSIYGCHKLKSLPDQLLQSSTLKTLR 473
FP+L++L SGL+EWEDW K + + MP + +L+I+ C KLK LPD+ L S L +
Sbjct: 822 GFPQLQKLSISGLKEWEDW---KVEESSMPLLLTLNIFDCRKLKQLPDEHLPSH-LTAIS 877
Query: 474 INRCRVLEEHFKKDRSKISHIPDIQIYE 501
+ +C LE+ ++ H+ ++ + E
Sbjct: 878 LKKCG-LEDPIPT-LERLVHLKELSLSE 903
|
|
| TAIR|locus:504956184 AT1G58807 "AT1G58807" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 136 (52.9 bits), Expect = 4.9e-07, Sum P(2) = 4.9e-07
Identities = 32/89 (35%), Positives = 50/89 (56%)
Query: 415 FPKLKELEFSGLQEWEDWDFRKEDITIMPQINSLSIYGCHKLKSLPDQLLQSSTLKTLRI 474
FP+L++L L+EWE+W + MP +++L I C KLK LPD L +LK L+I
Sbjct: 913 FPQLQKLSIYRLEEWEEWIVEQGS---MPFLHTLYIDDCPKLKKLPDGLQFIYSLKNLKI 969
Query: 475 N-RCRVLEEHFKKDRSKISHIPDIQIYER 502
+ R + ++ K+ HIP ++ Y R
Sbjct: 970 SERWKERLSEGGEEYYKVQHIPSVEFYHR 998
|
|
| TAIR|locus:2827038 AT1G59124 "AT1G59124" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 136 (52.9 bits), Expect = 4.9e-07, Sum P(2) = 4.9e-07
Identities = 32/89 (35%), Positives = 50/89 (56%)
Query: 415 FPKLKELEFSGLQEWEDWDFRKEDITIMPQINSLSIYGCHKLKSLPDQLLQSSTLKTLRI 474
FP+L++L L+EWE+W + MP +++L I C KLK LPD L +LK L+I
Sbjct: 913 FPQLQKLSIYRLEEWEEWIVEQGS---MPFLHTLYIDDCPKLKKLPDGLQFIYSLKNLKI 969
Query: 475 N-RCRVLEEHFKKDRSKISHIPDIQIYER 502
+ R + ++ K+ HIP ++ Y R
Sbjct: 970 SERWKERLSEGGEEYYKVQHIPSVEFYHR 998
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
 |
 |
 |
 |
 |
 |
 |
 |
||
 | GSVIVG00003253001 | SubName- Full=Chromosome undetermined scaffold_141, whole genome shotgun sequence; (697 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 625 | |||
| PLN02438 | 510 | PLN02438, PLN02438, inositol-3-phosphate synthase | 2e-07 |
| >gnl|CDD|178057 PLN02438, PLN02438, inositol-3-phosphate synthase | Back alignment and domain information |
|---|
Score = 53.6 bits (129), Expect = 2e-07
Identities = 24/49 (48%), Positives = 32/49 (65%), Gaps = 4/49 (8%)
Query: 580 FVTFESILPKVNSDDIAFGGRHTSDMNLAEA----KVLDIDFIAEIYDH 624
+ F+S+LP VN +DI FGG SDMNLA+A KVLDID ++ +
Sbjct: 122 YAPFKSLLPMVNPNDIVFGGWDISDMNLADAMERAKVLDIDLQKQLRPY 170
|
Length = 510 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 625 | |||
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 99.97 | |
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 99.96 | |
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 99.96 | |
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 99.96 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 99.93 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 99.92 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 99.91 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 99.91 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 99.91 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 99.88 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 99.87 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 99.77 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 99.75 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 99.61 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 99.58 | |
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 99.52 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 99.51 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 99.49 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 99.46 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 99.44 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 99.43 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 99.4 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 99.22 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 99.19 | |
| KOG0532 | 722 | consensus Leucine-rich repeat (LRR) protein, conta | 99.01 | |
| KOG0532 | 722 | consensus Leucine-rich repeat (LRR) protein, conta | 98.91 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 98.82 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 98.78 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 98.77 | |
| KOG4341 | 483 | consensus F-box protein containing LRR [General fu | 98.68 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 98.64 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 98.61 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 98.51 | |
| KOG4341 | 483 | consensus F-box protein containing LRR [General fu | 98.49 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 98.48 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 98.39 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 98.32 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 98.29 | |
| KOG1909 | 382 | consensus Ran GTPase-activating protein [RNA proce | 98.28 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 98.25 | |
| KOG1909 | 382 | consensus Ran GTPase-activating protein [RNA proce | 98.13 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 98.12 | |
| KOG0531 | 414 | consensus Protein phosphatase 1, regulatory subuni | 98.07 | |
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 98.06 | |
| KOG0531 | 414 | consensus Protein phosphatase 1, regulatory subuni | 98.01 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 97.99 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 97.92 | |
| KOG4579 | 177 | consensus Leucine-rich repeat (LRR) protein associ | 97.91 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 97.89 | |
| KOG1859 | 1096 | consensus Leucine-rich repeat proteins [General fu | 97.8 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 97.77 | |
| KOG1859 | 1096 | consensus Leucine-rich repeat proteins [General fu | 97.73 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 97.62 | |
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 97.56 | |
| KOG4579 | 177 | consensus Leucine-rich repeat (LRR) protein associ | 97.52 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 97.35 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 97.04 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 96.93 | |
| COG5238 | 388 | RNA1 Ran GTPase-activating protein (RanGAP) involv | 96.88 | |
| KOG1644 | 233 | consensus U2-associated snRNP A' protein [RNA proc | 96.64 | |
| KOG1947 | 482 | consensus Leucine rich repeat proteins, some prote | 96.49 | |
| KOG1644 | 233 | consensus U2-associated snRNP A' protein [RNA proc | 96.31 | |
| COG5238 | 388 | RNA1 Ran GTPase-activating protein (RanGAP) involv | 95.99 | |
| KOG2739 | 260 | consensus Leucine-rich acidic nuclear protein [Cel | 95.98 | |
| KOG2123 | 388 | consensus Uncharacterized conserved protein [Funct | 95.75 | |
| PF00560 | 22 | LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le | 95.64 | |
| KOG1947 | 482 | consensus Leucine rich repeat proteins, some prote | 95.53 | |
| KOG2123 | 388 | consensus Uncharacterized conserved protein [Funct | 95.44 | |
| KOG2739 | 260 | consensus Leucine-rich acidic nuclear protein [Cel | 95.29 | |
| PF00560 | 22 | LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le | 94.55 | |
| PF13306 | 129 | LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_ | 94.47 | |
| PF13504 | 17 | LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO | 93.72 | |
| KOG0693 | 512 | consensus Myo-inositol-1-phosphate synthase [Lipid | 93.29 | |
| KOG3864 | 221 | consensus Uncharacterized conserved protein [Funct | 92.01 | |
| KOG0473 | 326 | consensus Leucine-rich repeat protein [Function un | 91.53 | |
| PF13306 | 129 | LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_ | 91.46 | |
| KOG0473 | 326 | consensus Leucine-rich repeat protein [Function un | 91.24 | |
| PF13504 | 17 | LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO | 88.91 | |
| smart00370 | 26 | LRR Leucine-rich repeats, outliers. | 88.46 | |
| smart00369 | 26 | LRR_TYP Leucine-rich repeats, typical (most popula | 88.46 | |
| KOG3864 | 221 | consensus Uncharacterized conserved protein [Funct | 87.49 | |
| smart00369 | 26 | LRR_TYP Leucine-rich repeats, typical (most popula | 84.57 | |
| smart00370 | 26 | LRR Leucine-rich repeats, outliers. | 84.57 |
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.5e-30 Score=299.85 Aligned_cols=409 Identities=19% Similarity=0.230 Sum_probs=250.0
Q ss_pred HHHHHhhCCCCcccccCCCCCEeeEEeChHHHHHHHHHhhccc-------eEEeecCcccccccccCCCCceEEEEEEcC
Q 037953 10 YFDYLATRSLFQEFQRDEEGIVKRCKMHDIVHDFALFLNKKEC-------AAVEVEGVEEPLLLINTCPEKLRHLMLVLG 82 (625)
Q Consensus 10 ~~~~L~~~sll~~~~~~~~g~~~~~~mHdlv~d~~~~i~~~e~-------~~~~~~~~~~~~~~~~~~~~~lr~L~l~~~ 82 (625)
-++.|+++||++... + .++|||++|+||+++++++. +.......... ........+++.+++..+
T Consensus 471 ~l~~L~~ksLi~~~~----~---~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~v-l~~~~g~~~v~~i~l~~~ 542 (1153)
T PLN03210 471 GLKNLVDKSLIHVRE----D---IVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDV-LEDNTGTKKVLGITLDID 542 (1153)
T ss_pred ChHHHHhcCCEEEcC----C---eEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHH-HHhCcccceeeEEEeccC
Confidence 488999999998743 2 47999999999999998763 11111100000 011223457788877665
Q ss_pred CCCcc---hhhhccCCcceEEEeeccc----CCccccCchhhHHHhcC-CceeEEEeecCCCccccccchhhhhcccccc
Q 037953 83 YEAPS---LVSIFNAIKLRSLILFYWI----PNLDAMLPVLKGIFDQL-TCLRALRIEGTDNWELEEDQTNEILNGVEKL 154 (625)
Q Consensus 83 ~~~~~---~~~~~~l~~Lr~L~L~~~~----~~~~~~lp~~~~~~~~l-~~Lr~L~Ls~c~~~~~~~~~l~~lp~~~~~L 154 (625)
...++ +..|.++++|+.|.+..+. ......+| ..|..+ .+||.|++. ++.+..+|..| ..
T Consensus 543 ~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp---~~~~~lp~~Lr~L~~~--------~~~l~~lP~~f-~~ 610 (1153)
T PLN03210 543 EIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLP---EGFDYLPPKLRLLRWD--------KYPLRCMPSNF-RP 610 (1153)
T ss_pred ccceeeecHHHHhcCccccEEEEecccccccccceeecC---cchhhcCcccEEEEec--------CCCCCCCCCcC-Cc
Confidence 55332 3567888899988886642 11122344 445554 458888887 77777777666 46
Q ss_pred cccceecC-CC-CCCCchhhcCCCCCceEeecCCCCCCccccccccccccceEEe-cCcccccccccCCCccccccCCce
Q 037953 155 IHLRYLKL-NL-VGDLPEKCCELLNLQTLELENSSHFKRFPQGIGKLINLRHLIF-TEDLLEYMPKGIEKLTSLRTLSEF 231 (625)
Q Consensus 155 ~~L~~L~L-~~-l~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~l~~L~~L~~L~l-~~~~l~~lp~~i~~L~~L~~L~~~ 231 (625)
.+|+.|++ .. +..+|..+..+++|+.|+|++|..++.+| .++.+++|++|++ +|..+..+|..++++++|+.|++.
T Consensus 611 ~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~ 689 (1153)
T PLN03210 611 ENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMS 689 (1153)
T ss_pred cCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCC
Confidence 77777777 33 77777777777777777777776667776 4677777777777 566677777777777777777766
Q ss_pred EecCCCCcCCCcccChhccccccccccceEEeccCCCCChhHHHHhccCCCCCCCeEEEEEecccccccCCcc--ccc--
Q 037953 232 VVASGGGRYGSEACKLEGLRHLNHLRGSLKVRGLGNVADVDEVKNAHLEKKKNLVRLILRFKDIDKAVKRWPE--AIS-- 307 (625)
Q Consensus 232 ~~~~~~~~~~~~~~~l~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~--~~~-- 307 (625)
.+.... .++..+ ++++|+ .|.+++|..+...+. ...+|+.|+++++.+.. ++.... ...
T Consensus 690 ~c~~L~----~Lp~~i----~l~sL~-~L~Lsgc~~L~~~p~-------~~~nL~~L~L~~n~i~~-lP~~~~l~~L~~L 752 (1153)
T PLN03210 690 RCENLE----ILPTGI----NLKSLY-RLNLSGCSRLKSFPD-------ISTNISWLDLDETAIEE-FPSNLRLENLDEL 752 (1153)
T ss_pred CCCCcC----ccCCcC----CCCCCC-EEeCCCCCCcccccc-------ccCCcCeeecCCCcccc-ccccccccccccc
Confidence 544322 112211 345555 666666544333211 12456666666553210 000000 000
Q ss_pred ccchhhHHHH--------hhcCCCCCCCcEEEEeccCCCc-ccCCchhhcccccccEEEEeCCCCCCCCCCCCCCCCcce
Q 037953 308 NENAAKHEAI--------CEALWPPPNLESLEIAGFRGRK-MMLSTNWMASLNMLKKLRLLNCPTCEIMPPLGQLPSLEI 378 (625)
Q Consensus 308 ~~~~~~~~~~--------~~~l~~~~~L~~L~L~~~~~~~-~~~~p~~l~~l~~L~~L~L~~c~~l~~l~~l~~l~~L~~ 378 (625)
.........+ +.....+++|+.|++++|.... + |.+++++++|+.|++++|..++.+|....+++|+.
T Consensus 753 ~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~l---P~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~ 829 (1153)
T PLN03210 753 ILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVEL---PSSIQNLHKLEHLEIENCINLETLPTGINLESLES 829 (1153)
T ss_pred cccccchhhccccccccchhhhhccccchheeCCCCCCcccc---ChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCE
Confidence 0000000000 0011123567777777664333 3 67777777777777777777777765446777777
Q ss_pred eeccccccceeeCccCCCCCCCCCCCCCCCCCCCCCCCCCCeeeccCcccccccccCCCCcccCCCccEEEEecCCCCCc
Q 037953 379 LLIKDMTSVERVGDESLGIANGDHGAPSSSSVNNIAFPKLKELEFSGLQEWEDWDFRKEDITIMPQINSLSIYGCHKLKS 458 (625)
Q Consensus 379 L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~ 458 (625)
|++++|..++.+|. ..++|+.|+++++ .++.++.. +..+++|+.|++++|++++.
T Consensus 830 L~Ls~c~~L~~~p~---------------------~~~nL~~L~Ls~n-~i~~iP~s---i~~l~~L~~L~L~~C~~L~~ 884 (1153)
T PLN03210 830 LDLSGCSRLRTFPD---------------------ISTNISDLNLSRT-GIEEVPWW---IEKFSNLSFLDMNGCNNLQR 884 (1153)
T ss_pred EECCCCCccccccc---------------------cccccCEeECCCC-CCccChHH---HhcCCCCCEEECCCCCCcCc
Confidence 77777766655432 2356778887764 34444432 34788999999999999999
Q ss_pred CCcCCCCCCCCCEEEEecCcchhhcc
Q 037953 459 LPDQLLQSSTLKTLRINRCRVLEEHF 484 (625)
Q Consensus 459 lp~~~~~l~~L~~L~l~~c~~L~~~~ 484 (625)
+|..+..+++|+.+++++|+.++.++
T Consensus 885 l~~~~~~L~~L~~L~l~~C~~L~~~~ 910 (1153)
T PLN03210 885 VSLNISKLKHLETVDFSDCGALTEAS 910 (1153)
T ss_pred cCcccccccCCCeeecCCCccccccc
Confidence 88888888899999999998887654
|
syringae 6; Provisional |
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.2e-29 Score=296.03 Aligned_cols=403 Identities=18% Similarity=0.171 Sum_probs=222.8
Q ss_pred CCCceEEEEEEcCCCC-cchhhhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccch-hhh
Q 037953 70 CPEKLRHLMLVLGYEA-PSLVSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQT-NEI 147 (625)
Q Consensus 70 ~~~~lr~L~l~~~~~~-~~~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l-~~l 147 (625)
...++|+|++++|.+. .+|. ..+++|++|++++|. +.+.+| ..++++++|++|+|+ +|.+ +.+
T Consensus 116 ~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~--~~~~~p---~~~~~l~~L~~L~L~--------~n~l~~~~ 180 (968)
T PLN00113 116 TSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNM--LSGEIP---NDIGSFSSLKVLDLG--------GNVLVGKI 180 (968)
T ss_pred cCCCCCEEECcCCccccccCc--cccCCCCEEECcCCc--ccccCC---hHHhcCCCCCEEECc--------cCcccccC
Confidence 4567888888888773 4443 357788888888864 445667 778888888888888 6663 466
Q ss_pred hcccccccccceecC--CC-CCCCchhhcCCCCCceEeecCCCCCCccccccccccccceEEecCcccc-cccccCCCcc
Q 037953 148 LNGVEKLIHLRYLKL--NL-VGDLPEKCCELLNLQTLELENSSHFKRFPQGIGKLINLRHLIFTEDLLE-YMPKGIEKLT 223 (625)
Q Consensus 148 p~~~~~L~~L~~L~L--~~-l~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~l~~L~~L~~L~l~~~~l~-~lp~~i~~L~ 223 (625)
|..++++++|++|+| |. .+.+|..++++++|++|++++|...+.+|..++++++|++|++++|.+. .+|..+++++
T Consensus 181 p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~ 260 (968)
T PLN00113 181 PNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLK 260 (968)
T ss_pred ChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCC
Confidence 777888888888888 44 5567777888888888888887744467777788888888888555543 5677777777
Q ss_pred ccccCCceEecCCCCcCCCcccChhccccccccccceEEeccCCCCChhHHHHhccCCCCCCCeEEEEEecccccccCCc
Q 037953 224 SLRTLSEFVVASGGGRYGSEACKLEGLRHLNHLRGSLKVRGLGNVADVDEVKNAHLEKKKNLVRLILRFKDIDKAVKRWP 303 (625)
Q Consensus 224 ~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~ 303 (625)
+|+.|++..+.... .....+.++++|+ .|+++++. ..+..+..+..+++|+.|++++|.+.+..+..-
T Consensus 261 ~L~~L~L~~n~l~~-------~~p~~l~~l~~L~-~L~Ls~n~----l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~ 328 (968)
T PLN00113 261 NLQYLFLYQNKLSG-------PIPPSIFSLQKLI-SLDLSDNS----LSGEIPELVIQLQNLEILHLFSNNFTGKIPVAL 328 (968)
T ss_pred CCCEEECcCCeeec-------cCchhHhhccCcC-EEECcCCe----eccCCChhHcCCCCCcEEECCCCccCCcCChhH
Confidence 77777765544322 1122233344444 45554422 122233344555556666655554321111000
Q ss_pred ccccc------cchhhHHHHhhcCCCCCCCcEEEEeccCCCcccCCchhhcccccccEEEEeCCCCCCCCCC-CCCCCCc
Q 037953 304 EAISN------ENAAKHEAICEALWPPPNLESLEIAGFRGRKMMLSTNWMASLNMLKKLRLLNCPTCEIMPP-LGQLPSL 376 (625)
Q Consensus 304 ~~~~~------~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~p~~l~~l~~L~~L~L~~c~~l~~l~~-l~~l~~L 376 (625)
..... ........++..+..+++|+.|++++|...... |.++..+++|+.|++++|...+.+|. ++.+++|
T Consensus 329 ~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~--p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L 406 (968)
T PLN00113 329 TSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEI--PEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSL 406 (968)
T ss_pred hcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeC--ChhHhCcCCCCEEECcCCEecccCCHHHhCCCCC
Confidence 00000 000011233444455555666666555443211 55555555555555555444444442 5566667
Q ss_pred ceeeccccccceeeCccCCCCCCCCCCCCCCCC------CCCCCCCCCCeeeccCcccccccccC---------------
Q 037953 377 EILLIKDMTSVERVGDESLGIANGDHGAPSSSS------VNNIAFPKLKELEFSGLQEWEDWDFR--------------- 435 (625)
Q Consensus 377 ~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~------~~~~~l~~L~~L~L~~~~~l~~~~~~--------------- 435 (625)
+.|++++|...+.+|..+.....+..++++... .....+++|+.|++++|.-...++..
T Consensus 407 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~ 486 (968)
T PLN00113 407 RRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQ 486 (968)
T ss_pred CEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccceEEECcCCc
Confidence 777776666444555544444444333332211 11234566666666655322111110
Q ss_pred -----CCCcccCCCccEEEEecCCCCCcCCcCCCCCCCCCEEEEecCcchhhcccccccccCCCCceEEecC
Q 037953 436 -----KEDITIMPQINSLSIYGCHKLKSLPDQLLQSSTLKTLRINRCRVLEEHFKKDRSKISHIPDIQIYER 502 (625)
Q Consensus 436 -----~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~l~~l~~l~~~~~ 502 (625)
+..+..+++|+.|++++|...+.+|..+.++++|++|++++|.....+| ..+..+..+..+.+..+
T Consensus 487 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~Ls~N 557 (968)
T PLN00113 487 FSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIP-ASFSEMPVLSQLDLSQN 557 (968)
T ss_pred cCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCC-hhHhCcccCCEEECCCC
Confidence 0112345666666666654445566666666666666666665544444 44455555555555443
|
|
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-29 Score=283.10 Aligned_cols=218 Identities=24% Similarity=0.294 Sum_probs=171.5
Q ss_pred CcHHHHHHHHHHHHhhCCCCcccccCCCCCEeeEEeChHHHHHHHHHhh-----ccceEEeecCcccccccccCCCCceE
Q 037953 1 MEMEMIAEGYFDYLATRSLFQEFQRDEEGIVKRCKMHDIVHDFALFLNK-----KECAAVEVEGVEEPLLLINTCPEKLR 75 (625)
Q Consensus 1 ~~~e~~g~~~~~~L~~~sll~~~~~~~~g~~~~~~mHdlv~d~~~~i~~-----~e~~~~~~~~~~~~~~~~~~~~~~lr 75 (625)
++++|+|++|+.+||+++|++..+.. |+..+|+|||+|||||.++|+ ++.+++..+..... -+....+..+|
T Consensus 450 ~~~~d~G~~~i~~LV~~~Ll~~~~~~--~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~-~~~~~~~~~~r 526 (889)
T KOG4658|consen 450 ETAEDVGYDYIEELVRASLLIEERDE--GRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSE-IPQVKSWNSVR 526 (889)
T ss_pred cchhcchHHHHHHHHHHHHHhhcccc--cceeEEEeeHHHHHHHHHHhccccccccceEEECCcCccc-cccccchhhee
Confidence 46899999999999999999987644 778899999999999999999 67655554422221 12345678999
Q ss_pred EEEEEcCCCCcchhhhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccc-hhhhhcccccc
Q 037953 76 HLMLVLGYEAPSLVSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQ-TNEILNGVEKL 154 (625)
Q Consensus 76 ~L~l~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~-l~~lp~~~~~L 154 (625)
++++.+|.+..++.+ ..+++|++|.+.+|........+ ++|..++.||+|||+ +|. +..+|++++.|
T Consensus 527 r~s~~~~~~~~~~~~-~~~~~L~tLll~~n~~~l~~is~---~ff~~m~~LrVLDLs--------~~~~l~~LP~~I~~L 594 (889)
T KOG4658|consen 527 RMSLMNNKIEHIAGS-SENPKLRTLLLQRNSDWLLEISG---EFFRSLPLLRVLDLS--------GNSSLSKLPSSIGEL 594 (889)
T ss_pred EEEEeccchhhccCC-CCCCccceEEEeecchhhhhcCH---HHHhhCcceEEEECC--------CCCccCcCChHHhhh
Confidence 999999999777766 56779999999997532445555 789999999999999 777 88999999999
Q ss_pred cccceecC-CC-CCCCchhhcCCCCCceEeecCCCCCCccccccccccccceEEecCcccccccccCCCccccccCCceE
Q 037953 155 IHLRYLKL-NL-VGDLPEKCCELLNLQTLELENSSHFKRFPQGIGKLINLRHLIFTEDLLEYMPKGIEKLTSLRTLSEFV 232 (625)
Q Consensus 155 ~~L~~L~L-~~-l~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~l~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~~~~ 232 (625)
.+||||+| .+ +..+|.++++|+.|.+|++..+..+..+|..+..|++|++|.+.......-...++.+.+|++|....
T Consensus 595 i~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls 674 (889)
T KOG4658|consen 595 VHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLS 674 (889)
T ss_pred hhhhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhhe
Confidence 99999999 66 99999999999999999999998777777667779999999994433211112344455555555444
Q ss_pred e
Q 037953 233 V 233 (625)
Q Consensus 233 ~ 233 (625)
+
T Consensus 675 ~ 675 (889)
T KOG4658|consen 675 I 675 (889)
T ss_pred e
Confidence 4
|
|
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-28 Score=290.15 Aligned_cols=406 Identities=17% Similarity=0.153 Sum_probs=264.2
Q ss_pred CCCceEEEEEEcCCC-CcchhhhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccch-hhh
Q 037953 70 CPEKLRHLMLVLGYE-APSLVSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQT-NEI 147 (625)
Q Consensus 70 ~~~~lr~L~l~~~~~-~~~~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l-~~l 147 (625)
...++++|++++|.+ +.+|..+..+++|++|++++|. +.+.+| ..+.++++|++|+|+ +|.+ ..+
T Consensus 138 ~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~--l~~~~p---~~~~~l~~L~~L~L~--------~n~l~~~~ 204 (968)
T PLN00113 138 SIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNV--LVGKIP---NSLTNLTSLEFLTLA--------SNQLVGQI 204 (968)
T ss_pred ccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCc--ccccCC---hhhhhCcCCCeeecc--------CCCCcCcC
Confidence 356889999998887 4678888889999999999864 456677 788888899999988 6663 356
Q ss_pred hcccccccccceecC--CC-CCCCchhhcCCCCCceEeecCCCCCCccccccccccccceEEecCccc-ccccccCCCcc
Q 037953 148 LNGVEKLIHLRYLKL--NL-VGDLPEKCCELLNLQTLELENSSHFKRFPQGIGKLINLRHLIFTEDLL-EYMPKGIEKLT 223 (625)
Q Consensus 148 p~~~~~L~~L~~L~L--~~-l~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~l~~L~~L~~L~l~~~~l-~~lp~~i~~L~ 223 (625)
|..++++++|++|+| |. ...+|..++++++|++|++++|...+.+|..++++++|++|+++.|.+ ..+|..+++++
T Consensus 205 p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~ 284 (968)
T PLN00113 205 PRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQ 284 (968)
T ss_pred ChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhcc
Confidence 777888888888888 44 456777788888888888888774446777777777777777755554 35566666677
Q ss_pred ccccCCceEecCCCCcCCCcccChh---------------------ccccccccccceEEeccCCCCChhHHHHhccCCC
Q 037953 224 SLRTLSEFVVASGGGRYGSEACKLE---------------------GLRHLNHLRGSLKVRGLGNVADVDEVKNAHLEKK 282 (625)
Q Consensus 224 ~L~~L~~~~~~~~~~~~~~~~~~l~---------------------~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l 282 (625)
+|+.|++..+.... ..+..+. .+..+++|+ .|.+.++. ..+..+..+..+
T Consensus 285 ~L~~L~Ls~n~l~~----~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~-~L~L~~n~----l~~~~p~~l~~~ 355 (968)
T PLN00113 285 KLISLDLSDNSLSG----EIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQ-VLQLWSNK----FSGEIPKNLGKH 355 (968)
T ss_pred CcCEEECcCCeecc----CCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCC-EEECcCCC----CcCcCChHHhCC
Confidence 77776665443322 0111111 122233333 34433321 112233345556
Q ss_pred CCCCeEEEEEecccccccCCccccc------ccchhhHHHHhhcCCCCCCCcEEEEeccCCCcccCCchhhcccccccEE
Q 037953 283 KNLVRLILRFKDIDKAVKRWPEAIS------NENAAKHEAICEALWPPPNLESLEIAGFRGRKMMLSTNWMASLNMLKKL 356 (625)
Q Consensus 283 ~~L~~L~l~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~p~~l~~l~~L~~L 356 (625)
++|+.|++++|.+.+..+....... -........++..+..+++|+.|++++|...... |..+..+++|+.|
T Consensus 356 ~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~--p~~~~~l~~L~~L 433 (968)
T PLN00113 356 NNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGEL--PSEFTKLPLVYFL 433 (968)
T ss_pred CCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeEC--ChhHhcCCCCCEE
Confidence 6666666666654332221100000 0001112234455666777888888777655321 7777788888888
Q ss_pred EEeCCCCCCCCCC-CCCCCCcceeeccccccceeeCccCCCCCCCCCCCCCCCC------CCCCCCCCCCeeeccCcccc
Q 037953 357 RLLNCPTCEIMPP-LGQLPSLEILLIKDMTSVERVGDESLGIANGDHGAPSSSS------VNNIAFPKLKELEFSGLQEW 429 (625)
Q Consensus 357 ~L~~c~~l~~l~~-l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~------~~~~~l~~L~~L~L~~~~~l 429 (625)
++++|...+.++. +..+++|+.|++++|...+.+|.. .+...+..++++.+. ..+..+++|+.|+++++.-.
T Consensus 434 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~-~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 512 (968)
T PLN00113 434 DISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDS-FGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLS 512 (968)
T ss_pred ECcCCcccCccChhhccCCCCcEEECcCceeeeecCcc-cccccceEEECcCCccCCccChhhhhhhccCEEECcCCcce
Confidence 8888765555553 567888999999888766666643 233444444443322 23556788999999887533
Q ss_pred cccccCCCCcccCCCccEEEEecCCCCCcCCcCCCCCCCCCEEEEecCcchhhcccccccccCCCCceEEecCCC
Q 037953 430 EDWDFRKEDITIMPQINSLSIYGCHKLKSLPDQLLQSSTLKTLRINRCRVLEEHFKKDRSKISHIPDIQIYERGP 504 (625)
Q Consensus 430 ~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~l~~l~~l~~~~~~~ 504 (625)
..++.. +..+++|+.|++++|...+.+|..+..+++|++|++++|.....+| ..+..+..+..+.+.++..
T Consensus 513 ~~~p~~---~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~l~ls~N~l 583 (968)
T PLN00113 513 GEIPDE---LSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIP-KNLGNVESLVQVNISHNHL 583 (968)
T ss_pred eeCChH---HcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCC-hhHhcCcccCEEeccCCcc
Confidence 333322 4478999999999987777899999999999999999998877777 5666677777777765543
|
|
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.2e-28 Score=248.13 Aligned_cols=344 Identities=19% Similarity=0.195 Sum_probs=250.1
Q ss_pred CCCCceEEEEEEcCCCCcchhhhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchh--h
Q 037953 69 TCPEKLRHLMLVLGYEAPSLVSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTN--E 146 (625)
Q Consensus 69 ~~~~~lr~L~l~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~--~ 146 (625)
.....++.|.|...++..+|+.+..+.+|+.|.+++|+ ... +- ..++.++.||.+++. +|++. .
T Consensus 29 ~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~--L~~-vh---GELs~Lp~LRsv~~R--------~N~LKnsG 94 (1255)
T KOG0444|consen 29 EQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQ--LIS-VH---GELSDLPRLRSVIVR--------DNNLKNSG 94 (1255)
T ss_pred HHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhh--hHh-hh---hhhccchhhHHHhhh--------ccccccCC
Confidence 33456777777777777888888888888888887765 222 22 456777788888887 77643 5
Q ss_pred hhcccccccccceecC-CC-CCCCchhhcCCCCCceEeecCCCCCCccccc-cccccccceEEecCcccccccccCCCcc
Q 037953 147 ILNGVEKLIHLRYLKL-NL-VGDLPEKCCELLNLQTLELENSSHFKRFPQG-IGKLINLRHLIFTEDLLEYMPKGIEKLT 223 (625)
Q Consensus 147 lp~~~~~L~~L~~L~L-~~-l~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~-l~~L~~L~~L~l~~~~l~~lp~~i~~L~ 223 (625)
+|..+..+..|.+||| .+ ++..|..+.+-+++-+|+|++|+ +.++|.. +.+|+.|-.||+++|.++.+|+.+.+|.
T Consensus 95 iP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~-IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~ 173 (1255)
T KOG0444|consen 95 IPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNN-IETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLS 173 (1255)
T ss_pred CCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCc-cccCCchHHHhhHhHhhhccccchhhhcCHHHHHHh
Confidence 6777888888888888 33 88888888888888888888887 8888776 5678888888888888888888888888
Q ss_pred ccccCCceEecCCCCcCCCcccChhccccccccccceEEeccCCCCChhHHHHhccCCCCCCCeEEEEEecccccccCCc
Q 037953 224 SLRTLSEFVVASGGGRYGSEACKLEGLRHLNHLRGSLKVRGLGNVADVDEVKNAHLEKKKNLVRLILRFKDIDKAVKRWP 303 (625)
Q Consensus 224 ~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~ 303 (625)
.|++|.+++++... ..+..++.++.|. .|.+++... ....++..+..+.+|..++++.|+
T Consensus 174 ~LqtL~Ls~NPL~h-------fQLrQLPsmtsL~-vLhms~TqR---Tl~N~Ptsld~l~NL~dvDlS~N~--------- 233 (1255)
T KOG0444|consen 174 MLQTLKLSNNPLNH-------FQLRQLPSMTSLS-VLHMSNTQR---TLDNIPTSLDDLHNLRDVDLSENN--------- 233 (1255)
T ss_pred hhhhhhcCCChhhH-------HHHhcCccchhhh-hhhcccccc---hhhcCCCchhhhhhhhhccccccC---------
Confidence 88888877665443 4566667777776 676665432 233456677788888888888874
Q ss_pred ccccccchhhHHHHhhcCCCCCCCcEEEEeccCCCcccCCchhhcccccccEEEEeCCCCCCCCCC-CCCCCCcceeecc
Q 037953 304 EAISNENAAKHEAICEALWPPPNLESLEIAGFRGRKMMLSTNWMASLNMLKKLRLLNCPTCEIMPP-LGQLPSLEILLIK 382 (625)
Q Consensus 304 ~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~p~~l~~l~~L~~L~L~~c~~l~~l~~-l~~l~~L~~L~L~ 382 (625)
...+|+.+..+++|+.|+|++|...++ .-..+...+|+.|+++. +.++.+|. +.+++.|+.|.+.
T Consensus 234 ----------Lp~vPecly~l~~LrrLNLS~N~iteL---~~~~~~W~~lEtLNlSr-NQLt~LP~avcKL~kL~kLy~n 299 (1255)
T KOG0444|consen 234 ----------LPIVPECLYKLRNLRRLNLSGNKITEL---NMTEGEWENLETLNLSR-NQLTVLPDAVCKLTKLTKLYAN 299 (1255)
T ss_pred ----------CCcchHHHhhhhhhheeccCcCceeee---eccHHHHhhhhhhcccc-chhccchHHHhhhHHHHHHHhc
Confidence 345677777888888888888887776 55555667888888888 56777774 8888888888887
Q ss_pred ccc-cceeeCccCCCCCCCCCCCCCCCCCCCCCCCCCCeeeccCcccccccccCCCCcccCCCccEEEEecCCCCCcCCc
Q 037953 383 DMT-SVERVGDESLGIANGDHGAPSSSSVNNIAFPKLKELEFSGLQEWEDWDFRKEDITIMPQINSLSIYGCHKLKSLPD 461 (625)
Q Consensus 383 ~~~-~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~ 461 (625)
++. ..+.||.+ ++.+.+|+.+...+. .++-++ .+++.+++|+.|.++. +.+-.+|.
T Consensus 300 ~NkL~FeGiPSG------------------IGKL~~Levf~aanN-~LElVP---EglcRC~kL~kL~L~~-NrLiTLPe 356 (1255)
T KOG0444|consen 300 NNKLTFEGIPSG------------------IGKLIQLEVFHAANN-KLELVP---EGLCRCVKLQKLKLDH-NRLITLPE 356 (1255)
T ss_pred cCcccccCCccc------------------hhhhhhhHHHHhhcc-ccccCc---hhhhhhHHHHHhcccc-cceeechh
Confidence 654 11223322 677778888777653 333333 3355788999999986 67888999
Q ss_pred CCCCCCCCCEEEEecCcchhhcc
Q 037953 462 QLLQSSTLKTLRINRCRVLEEHF 484 (625)
Q Consensus 462 ~~~~l~~L~~L~l~~c~~L~~~~ 484 (625)
.+.-++.|+.||+..+|++.--|
T Consensus 357 aIHlL~~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 357 AIHLLPDLKVLDLRENPNLVMPP 379 (1255)
T ss_pred hhhhcCCcceeeccCCcCccCCC
Confidence 88888999999999999876444
|
|
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.1e-27 Score=228.80 Aligned_cols=240 Identities=24% Similarity=0.247 Sum_probs=189.3
Q ss_pred CCceEEEEEEcCCCCcchhhhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhhhcc
Q 037953 71 PEKLRHLMLVLGYEAPSLVSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEILNG 150 (625)
Q Consensus 71 ~~~lr~L~l~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp~~ 150 (625)
...+..+.+++|...++|++++++..+..|+++.|+ ...+| ..+.++..|+.|+.+ +|.+.++|++
T Consensus 67 L~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~---ls~lp---~~i~s~~~l~~l~~s--------~n~~~el~~~ 132 (565)
T KOG0472|consen 67 LACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNK---LSELP---EQIGSLISLVKLDCS--------SNELKELPDS 132 (565)
T ss_pred ccceeEEEeccchhhhCCHHHHHHHHHHHhhcccch---Hhhcc---HHHhhhhhhhhhhcc--------ccceeecCch
Confidence 456788889999998999999999999999999976 66778 889999999999999 9999999999
Q ss_pred cccccccceecC-CC-CCCCchhhcCCCCCceEeecCCCCCCccccccccccccceEEecCcccccccccCCCccccccC
Q 037953 151 VEKLIHLRYLKL-NL-VGDLPEKCCELLNLQTLELENSSHFKRFPQGIGKLINLRHLIFTEDLLEYMPKGIEKLTSLRTL 228 (625)
Q Consensus 151 ~~~L~~L~~L~L-~~-l~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~l~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L 228 (625)
++.+..|..|+. ++ +.++|++++++.+|..|++.+|. ++++|+..-+++.|++||...|.++.+|+.++.+.+|..|
T Consensus 133 i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~-l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~L 211 (565)
T KOG0472|consen 133 IGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNK-LKALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELL 211 (565)
T ss_pred HHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccc-hhhCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHH
Confidence 999999999999 55 99999999999999999999998 8899888777999999999889999999999999999988
Q ss_pred CceEecCCCCcCCCcccChhccccccccccceEEeccCCCCChhHHHHhccCCCCCCCeEEEEEecccccccCCcccccc
Q 037953 229 SEFVVASGGGRYGSEACKLEGLRHLNHLRGSLKVRGLGNVADVDEVKNAHLEKKKNLVRLILRFKDIDKAVKRWPEAISN 308 (625)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 308 (625)
++..+.... +.++++...|. .+++.. +.+.-.......++.++..|+++.|
T Consensus 212 yL~~Nki~~---------lPef~gcs~L~-Elh~g~----N~i~~lpae~~~~L~~l~vLDLRdN--------------- 262 (565)
T KOG0472|consen 212 YLRRNKIRF---------LPEFPGCSLLK-ELHVGE----NQIEMLPAEHLKHLNSLLVLDLRDN--------------- 262 (565)
T ss_pred Hhhhccccc---------CCCCCccHHHH-HHHhcc----cHHHhhHHHHhcccccceeeecccc---------------
Confidence 877665443 22333333343 444432 2222222333557888888888877
Q ss_pred cchhhHHHHhhcCCCCCCCcEEEEeccCCCcccCCchhhcccccccEEEEeCCC
Q 037953 309 ENAAKHEAICEALWPPPNLESLEIAGFRGRKMMLSTNWMASLNMLKKLRLLNCP 362 (625)
Q Consensus 309 ~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~p~~l~~l~~L~~L~L~~c~ 362 (625)
...++|+.+..+.+|.+|++++|..... |..++++ +|+.|.+.|++
T Consensus 263 ----klke~Pde~clLrsL~rLDlSNN~is~L---p~sLgnl-hL~~L~leGNP 308 (565)
T KOG0472|consen 263 ----KLKEVPDEICLLRSLERLDLSNNDISSL---PYSLGNL-HLKFLALEGNP 308 (565)
T ss_pred ----ccccCchHHHHhhhhhhhcccCCccccC---Ccccccc-eeeehhhcCCc
Confidence 3466777777777888888888877776 7777777 77777777654
|
|
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.3e-24 Score=249.80 Aligned_cols=298 Identities=21% Similarity=0.270 Sum_probs=178.5
Q ss_pred cceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhhhcccccccccceecC--CC-CCCCchhh
Q 037953 96 KLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEILNGVEKLIHLRYLKL--NL-VGDLPEKC 172 (625)
Q Consensus 96 ~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp~~~~~L~~L~~L~L--~~-l~~lP~~i 172 (625)
+||.|.+.++. ...+| ..| ...+|+.|+++ ++.+..+|..+..+++|++|+| +. ++.+| .+
T Consensus 590 ~Lr~L~~~~~~---l~~lP---~~f-~~~~L~~L~L~--------~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~l 653 (1153)
T PLN03210 590 KLRLLRWDKYP---LRCMP---SNF-RPENLVKLQMQ--------GSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIP-DL 653 (1153)
T ss_pred ccEEEEecCCC---CCCCC---CcC-CccCCcEEECc--------CccccccccccccCCCCCEEECCCCCCcCcCC-cc
Confidence 35555555543 23333 333 34555555555 5555555555555555555555 33 55554 35
Q ss_pred cCCCCCceEeecCCCCCCccccccccccccceEEe-cCcccccccccCCCccccccCCceEecCCCC-------------
Q 037953 173 CELLNLQTLELENSSHFKRFPQGIGKLINLRHLIF-TEDLLEYMPKGIEKLTSLRTLSEFVVASGGG------------- 238 (625)
Q Consensus 173 ~~L~~L~~L~L~~~~~l~~lp~~l~~L~~L~~L~l-~~~~l~~lp~~i~~L~~L~~L~~~~~~~~~~------------- 238 (625)
+.+++|++|+|++|..+..+|..++++++|+.|++ .|+.++.+|..+ ++++|+.|.+.++.....
T Consensus 654 s~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L 732 (1153)
T PLN03210 654 SMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDISTNISWLDL 732 (1153)
T ss_pred ccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccccCCcCeeec
Confidence 55555555555555555555555555555555555 445555555444 445555544433321110
Q ss_pred ---cCCCcccChhccccccccccceEEeccCCCC---ChhHHHHhccCCCCCCCeEEEEEecccccccCCcccccccchh
Q 037953 239 ---RYGSEACKLEGLRHLNHLRGSLKVRGLGNVA---DVDEVKNAHLEKKKNLVRLILRFKDIDKAVKRWPEAISNENAA 312 (625)
Q Consensus 239 ---~~~~~~~~l~~l~~L~~L~~~L~l~~~~~~~---~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 312 (625)
.+...+..+ .+++|. .|.+..+.... ......+......++|+.|+++.|.
T Consensus 733 ~~n~i~~lP~~~----~l~~L~-~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~------------------ 789 (1153)
T PLN03210 733 DETAIEEFPSNL----RLENLD-ELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIP------------------ 789 (1153)
T ss_pred CCCccccccccc----cccccc-cccccccchhhccccccccchhhhhccccchheeCCCCC------------------
Confidence 000011111 122333 33333221100 0000000112234578888887663
Q ss_pred hHHHHhhcCCCCCCCcEEEEeccCCCcccCCchhhcccccccEEEEeCCCCCCCCCCCCCCCCcceeeccccccceeeCc
Q 037953 313 KHEAICEALWPPPNLESLEIAGFRGRKMMLSTNWMASLNMLKKLRLLNCPTCEIMPPLGQLPSLEILLIKDMTSVERVGD 392 (625)
Q Consensus 313 ~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~p~~l~~l~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~~~~l~~l~~ 392 (625)
....+|..++.+++|+.|++++|...... |..+ ++++|+.|++++|..+..+|.. .++|+.|+|+++. ++.+|.
T Consensus 790 ~l~~lP~si~~L~~L~~L~Ls~C~~L~~L--P~~~-~L~sL~~L~Ls~c~~L~~~p~~--~~nL~~L~Ls~n~-i~~iP~ 863 (1153)
T PLN03210 790 SLVELPSSIQNLHKLEHLEIENCINLETL--PTGI-NLESLESLDLSGCSRLRTFPDI--STNISDLNLSRTG-IEEVPW 863 (1153)
T ss_pred CccccChhhhCCCCCCEEECCCCCCcCee--CCCC-CccccCEEECCCCCcccccccc--ccccCEeECCCCC-CccChH
Confidence 23557778899999999999998654431 7665 7899999999999998888754 4789999999864 777775
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCeeeccCcccccccccCCCCcccCCCccEEEEecCCCCCcCC
Q 037953 393 ESLGIANGDHGAPSSSSVNNIAFPKLKELEFSGLQEWEDWDFRKEDITIMPQINSLSIYGCHKLKSLP 460 (625)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp 460 (625)
. +..+++|+.|++++|+++..++.... .+++|+.|++++|..++.++
T Consensus 864 s------------------i~~l~~L~~L~L~~C~~L~~l~~~~~---~L~~L~~L~l~~C~~L~~~~ 910 (1153)
T PLN03210 864 W------------------IEKFSNLSFLDMNGCNNLQRVSLNIS---KLKHLETVDFSDCGALTEAS 910 (1153)
T ss_pred H------------------HhcCCCCCEEECCCCCCcCccCcccc---cccCCCeeecCCCccccccc
Confidence 4 67889999999999999998876544 78999999999999998764
|
syringae 6; Provisional |
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.1e-25 Score=227.46 Aligned_cols=362 Identities=16% Similarity=0.246 Sum_probs=248.2
Q ss_pred CCCceEEEEEEcCCCCcc-hhhhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhhh
Q 037953 70 CPEKLRHLMLVLGYEAPS-LVSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEIL 148 (625)
Q Consensus 70 ~~~~lr~L~l~~~~~~~~-~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp 148 (625)
.+...+.|++++|.+..+ +..|.++++|+.+.+.+|. ...+| .+.....+|+.|+|. +|.|.++.
T Consensus 76 lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~---Lt~IP---~f~~~sghl~~L~L~--------~N~I~sv~ 141 (873)
T KOG4194|consen 76 LPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNE---LTRIP---RFGHESGHLEKLDLR--------HNLISSVT 141 (873)
T ss_pred CccceeeeeccccccccCcHHHHhcCCcceeeeeccch---hhhcc---cccccccceeEEeee--------cccccccc
Confidence 355667788888777444 4567778888888887765 55566 655666678888888 77777663
Q ss_pred -cccccccccceecC-CC-CCCCch-hhcCCCCCceEeecCCCCCCccccc-cccccccceEEecCccccccccc-CCCc
Q 037953 149 -NGVEKLIHLRYLKL-NL-VGDLPE-KCCELLNLQTLELENSSHFKRFPQG-IGKLINLRHLIFTEDLLEYMPKG-IEKL 222 (625)
Q Consensus 149 -~~~~~L~~L~~L~L-~~-l~~lP~-~i~~L~~L~~L~L~~~~~l~~lp~~-l~~L~~L~~L~l~~~~l~~lp~~-i~~L 222 (625)
+++..++.||.||| .+ +..+|. ++..-.++++|+|++|. ++.+-.+ |..+.+|..|.++.|.++.+|.. +.+|
T Consensus 142 se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~-It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L 220 (873)
T KOG4194|consen 142 SEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNR-ITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRL 220 (873)
T ss_pred HHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeecccc-ccccccccccccchheeeecccCcccccCHHHhhhc
Confidence 34777788888888 33 777764 35555778888888887 7776544 77777888888888888888765 4557
Q ss_pred cccccCCceEecCCCCcCCCcccChhccccccccccceEEeccCCCCChhHHHHhccCCCCCCCeEEEEEecccccccCC
Q 037953 223 TSLRTLSEFVVASGGGRYGSEACKLEGLRHLNHLRGSLKVRGLGNVADVDEVKNAHLEKKKNLVRLILRFKDIDKAVKRW 302 (625)
Q Consensus 223 ~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 302 (625)
+.|+.|++-.+...-. ....+..|.+|++| .+.. +++...-...|..+.++++|++..|.++
T Consensus 221 ~~L~~LdLnrN~iriv----e~ltFqgL~Sl~nl----klqr----N~I~kL~DG~Fy~l~kme~l~L~~N~l~------ 282 (873)
T KOG4194|consen 221 PKLESLDLNRNRIRIV----EGLTFQGLPSLQNL----KLQR----NDISKLDDGAFYGLEKMEHLNLETNRLQ------ 282 (873)
T ss_pred chhhhhhccccceeee----hhhhhcCchhhhhh----hhhh----cCcccccCcceeeecccceeecccchhh------
Confidence 7888777655443320 02333444444443 2322 2222222345777888888888888532
Q ss_pred cccccccchhhHHHHhhcCCCCCCCcEEEEeccCCCcccCCchhhcccccccEEEEeCCCCCCCCC--CCCCCCCcceee
Q 037953 303 PEAISNENAAKHEAICEALWPPPNLESLEIAGFRGRKMMLSTNWMASLNMLKKLRLLNCPTCEIMP--PLGQLPSLEILL 380 (625)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~p~~l~~l~~L~~L~L~~c~~l~~l~--~l~~l~~L~~L~ 380 (625)
..--.++..++.|+.|+++.|....+. ++....+++|+.|+|++ +.++.++ .+..+..|+.|.
T Consensus 283 ------------~vn~g~lfgLt~L~~L~lS~NaI~rih--~d~WsftqkL~~LdLs~-N~i~~l~~~sf~~L~~Le~Ln 347 (873)
T KOG4194|consen 283 ------------AVNEGWLFGLTSLEQLDLSYNAIQRIH--IDSWSFTQKLKELDLSS-NRITRLDEGSFRVLSQLEELN 347 (873)
T ss_pred ------------hhhcccccccchhhhhccchhhhheee--cchhhhcccceeEeccc-cccccCChhHHHHHHHhhhhc
Confidence 222235667888999999988877764 66677889999999988 5566666 377788999999
Q ss_pred ccccccceeeCccCCCCCCCCCCCCCCCCCCCCCCCCCCeeeccCcccccccccCCCC--cccCCCccEEEEecCCCCCc
Q 037953 381 IKDMTSVERVGDESLGIANGDHGAPSSSSVNNIAFPKLKELEFSGLQEWEDWDFRKED--ITIMPQINSLSIYGCHKLKS 458 (625)
Q Consensus 381 L~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~--~~~l~~L~~L~l~~c~~l~~ 458 (625)
|++|. +.++.++. +.++.+|++|+|++.. -.|.+.+.. +..+++|++|.+.+ ++++.
T Consensus 348 Ls~Ns-i~~l~e~a-----------------f~~lssL~~LdLr~N~--ls~~IEDaa~~f~gl~~LrkL~l~g-Nqlk~ 406 (873)
T KOG4194|consen 348 LSHNS-IDHLAEGA-----------------FVGLSSLHKLDLRSNE--LSWCIEDAAVAFNGLPSLRKLRLTG-NQLKS 406 (873)
T ss_pred ccccc-hHHHHhhH-----------------HHHhhhhhhhcCcCCe--EEEEEecchhhhccchhhhheeecC-ceeee
Confidence 99865 76665443 5677899999998753 233333322 45699999999999 68999
Q ss_pred CCcC-CCCCCCCCEEEEecCcchhhcccccccccCCCCceEEecC
Q 037953 459 LPDQ-LLQSSTLKTLRINRCRVLEEHFKKDRSKISHIPDIQIYER 502 (625)
Q Consensus 459 lp~~-~~~l~~L~~L~l~~c~~L~~~~~~~~~~l~~l~~l~~~~~ 502 (625)
||.. +..+++|++|++.+++...-.+ ..+..+ +++++.+...
T Consensus 407 I~krAfsgl~~LE~LdL~~NaiaSIq~-nAFe~m-~Lk~Lv~nSs 449 (873)
T KOG4194|consen 407 IPKRAFSGLEALEHLDLGDNAIASIQP-NAFEPM-ELKELVMNSS 449 (873)
T ss_pred cchhhhccCcccceecCCCCcceeecc-cccccc-hhhhhhhccc
Confidence 9864 4558999999999997644334 556666 7777766543
|
|
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.4e-26 Score=233.36 Aligned_cols=356 Identities=17% Similarity=0.163 Sum_probs=286.0
Q ss_pred CCceEEEEEEcCCC--CcchhhhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhhh
Q 037953 71 PEKLRHLMLVLGYE--APSLVSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEIL 148 (625)
Q Consensus 71 ~~~lr~L~l~~~~~--~~~~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp 148 (625)
.+-+|-+++++|.+ +.+|.....++.++.|.|...+ ...+| +.++.+.+|+.|.++ +|++..+-
T Consensus 6 LpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~---L~~vP---eEL~~lqkLEHLs~~--------HN~L~~vh 71 (1255)
T KOG0444|consen 6 LPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTK---LEQVP---EELSRLQKLEHLSMA--------HNQLISVH 71 (1255)
T ss_pred cceeecccccCCcCCCCcCchhHHHhhheeEEEechhh---hhhCh---HHHHHHhhhhhhhhh--------hhhhHhhh
Confidence 45688999999998 6889999999999999999966 67788 999999999999999 99999998
Q ss_pred cccccccccceecC--CC--CCCCchhhcCCCCCceEeecCCCCCCccccccccccccceEEecCccccccccc-CCCcc
Q 037953 149 NGVEKLIHLRYLKL--NL--VGDLPEKCCELLNLQTLELENSSHFKRFPQGIGKLINLRHLIFTEDLLEYMPKG-IEKLT 223 (625)
Q Consensus 149 ~~~~~L~~L~~L~L--~~--l~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~l~~L~~L~~L~l~~~~l~~lp~~-i~~L~ 223 (625)
..+..|+.||.+++ |+ -..+|..|.+|..|.+|||++|. ++++|..+..-+++-.|++++|+++.||.. +.+|+
T Consensus 72 GELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNq-L~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLt 150 (1255)
T KOG0444|consen 72 GELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQ-LREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLT 150 (1255)
T ss_pred hhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhh-hhhcchhhhhhcCcEEEEcccCccccCCchHHHhhH
Confidence 88999999999999 66 67899999999999999999999 999999999999999999999999999976 56788
Q ss_pred ccccCCceEecCCCCcCCCcccChhccccccccccceEEeccCCCCChhHHHHhccCCCCCCCeEEEEEecccccccCCc
Q 037953 224 SLRTLSEFVVASGGGRYGSEACKLEGLRHLNHLRGSLKVRGLGNVADVDEVKNAHLEKKKNLVRLILRFKDIDKAVKRWP 303 (625)
Q Consensus 224 ~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~ 303 (625)
.|-.|+++++.... ++..+..+.+|+ .|.+++ +.........+..++.|+.|.+++..
T Consensus 151 DLLfLDLS~NrLe~-----LPPQ~RRL~~Lq----tL~Ls~----NPL~hfQLrQLPsmtsL~vLhms~Tq--------- 208 (1255)
T KOG0444|consen 151 DLLFLDLSNNRLEM-----LPPQIRRLSMLQ----TLKLSN----NPLNHFQLRQLPSMTSLSVLHMSNTQ--------- 208 (1255)
T ss_pred hHhhhccccchhhh-----cCHHHHHHhhhh----hhhcCC----ChhhHHHHhcCccchhhhhhhccccc---------
Confidence 88888887766544 444444454444 555555 33333334456677788888888653
Q ss_pred ccccccchhhHHHHhhcCCCCCCCcEEEEeccCCCcccCCchhhcccccccEEEEeCCCCCCCCC-CCCCCCCcceeecc
Q 037953 304 EAISNENAAKHEAICEALWPPPNLESLEIAGFRGRKMMLSTNWMASLNMLKKLRLLNCPTCEIMP-PLGQLPSLEILLIK 382 (625)
Q Consensus 304 ~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~p~~l~~l~~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~L~ 382 (625)
.....+|.++..+.+|..++++.|..... |..+-.+++|+.|+|++ +.++.+. ..+...+|++|+++
T Consensus 209 --------RTl~N~Ptsld~l~NL~dvDlS~N~Lp~v---Pecly~l~~LrrLNLS~-N~iteL~~~~~~W~~lEtLNlS 276 (1255)
T KOG0444|consen 209 --------RTLDNIPTSLDDLHNLRDVDLSENNLPIV---PECLYKLRNLRRLNLSG-NKITELNMTEGEWENLETLNLS 276 (1255)
T ss_pred --------chhhcCCCchhhhhhhhhccccccCCCcc---hHHHhhhhhhheeccCc-CceeeeeccHHHHhhhhhhccc
Confidence 13466788888999999999999988887 99999999999999999 4566665 36678899999999
Q ss_pred ccccceeeCccCCCCCCCCCCCCCCCCCCCCCCCCCCeeeccCcc-cccccccCCCCcccCCCccEEEEecCCCCCcCCc
Q 037953 383 DMTSVERVGDESLGIANGDHGAPSSSSVNNIAFPKLKELEFSGLQ-EWEDWDFRKEDITIMPQINSLSIYGCHKLKSLPD 461 (625)
Q Consensus 383 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~-~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~ 461 (625)
++. ++.+|.. +..+++|+.|.+.+.. ..+.++ .+++.+.+|+.+...+ +++.-+|+
T Consensus 277 rNQ-Lt~LP~a------------------vcKL~kL~kLy~n~NkL~FeGiP---SGIGKL~~Levf~aan-N~LElVPE 333 (1255)
T KOG0444|consen 277 RNQ-LTVLPDA------------------VCKLTKLTKLYANNNKLTFEGIP---SGIGKLIQLEVFHAAN-NKLELVPE 333 (1255)
T ss_pred cch-hccchHH------------------HhhhHHHHHHHhccCcccccCCc---cchhhhhhhHHHHhhc-cccccCch
Confidence 966 8888875 5678999999887653 234443 2356899999999998 68999999
Q ss_pred CCCCCCCCCEEEEecCcchhhcccccccccCCCCceEEe
Q 037953 462 QLLQSSTLKTLRINRCRVLEEHFKKDRSKISHIPDIQIY 500 (625)
Q Consensus 462 ~~~~l~~L~~L~l~~c~~L~~~~~~~~~~l~~l~~l~~~ 500 (625)
++..+..|+.|.++.+.. ...| +.+.-+..+..+.+.
T Consensus 334 glcRC~kL~kL~L~~NrL-iTLP-eaIHlL~~l~vLDlr 370 (1255)
T KOG0444|consen 334 GLCRCVKLQKLKLDHNRL-ITLP-EAIHLLPDLKVLDLR 370 (1255)
T ss_pred hhhhhHHHHHhcccccce-eech-hhhhhcCCcceeecc
Confidence 999999999999977754 4455 444444444444443
|
|
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.3e-23 Score=212.52 Aligned_cols=341 Identities=19% Similarity=0.221 Sum_probs=259.9
Q ss_pred CCCCceEEEEEEcCCCCcchhhhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhhh
Q 037953 69 TCPEKLRHLMLVLGYEAPSLVSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEIL 148 (625)
Q Consensus 69 ~~~~~lr~L~l~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp 148 (625)
...++++.+++..|.++.+|.......+|+.|+|.+|. +...-. +.++.++.||+|||| .|.+.++|
T Consensus 99 ~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~--I~sv~s---e~L~~l~alrslDLS--------rN~is~i~ 165 (873)
T KOG4194|consen 99 YNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNL--ISSVTS---EELSALPALRSLDLS--------RNLISEIP 165 (873)
T ss_pred hcCCcceeeeeccchhhhcccccccccceeEEeeeccc--cccccH---HHHHhHhhhhhhhhh--------hchhhccc
Confidence 45679999999999999999877778889999999976 344334 789999999999999 99999997
Q ss_pred c-ccccccccceecC-CC-CCCCc-hhhcCCCCCceEeecCCCCCCccccc-cccccccceEEecCccccccc-ccCCCc
Q 037953 149 N-GVEKLIHLRYLKL-NL-VGDLP-EKCCELLNLQTLELENSSHFKRFPQG-IGKLINLRHLIFTEDLLEYMP-KGIEKL 222 (625)
Q Consensus 149 ~-~~~~L~~L~~L~L-~~-l~~lP-~~i~~L~~L~~L~L~~~~~l~~lp~~-l~~L~~L~~L~l~~~~l~~lp-~~i~~L 222 (625)
. +|..-.++++|+| ++ ++.+- ..+..+.+|-+|.|+.|+ ++.+|.. |.+|++|+.|++..|.++.+- -.+..|
T Consensus 166 ~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNr-ittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL 244 (873)
T KOG4194|consen 166 KPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNR-ITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGL 244 (873)
T ss_pred CCCCCCCCCceEEeeccccccccccccccccchheeeecccCc-ccccCHHHhhhcchhhhhhccccceeeehhhhhcCc
Confidence 5 4888889999999 55 88875 458889999999999999 9999977 566999999999999887762 347788
Q ss_pred cccccCCceEecCCCCcCCCcccChhccccccccccceEEeccCCCCChhHHHHhccCCCCCCCeEEEEEecccccccCC
Q 037953 223 TSLRTLSEFVVASGGGRYGSEACKLEGLRHLNHLRGSLKVRGLGNVADVDEVKNAHLEKKKNLVRLILRFKDIDKAVKRW 302 (625)
Q Consensus 223 ~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 302 (625)
.+|+.|.+..+.... -....+-.+.++.+| .|..+.+ .......+-+++.|+.|++++|.++
T Consensus 245 ~Sl~nlklqrN~I~k----L~DG~Fy~l~kme~l--~L~~N~l------~~vn~g~lfgLt~L~~L~lS~NaI~------ 306 (873)
T KOG4194|consen 245 PSLQNLKLQRNDISK----LDDGAFYGLEKMEHL--NLETNRL------QAVNEGWLFGLTSLEQLDLSYNAIQ------ 306 (873)
T ss_pred hhhhhhhhhhcCccc----ccCcceeeeccccee--ecccchh------hhhhcccccccchhhhhccchhhhh------
Confidence 999998876655443 113445556666655 3554443 3344457889999999999999643
Q ss_pred cccccccchhhHHHHhhcCCCCCCCcEEEEeccCCCcccCCchhhcccccccEEEEeCCCCCCCCC--CCCCCCCcceee
Q 037953 303 PEAISNENAAKHEAICEALWPPPNLESLEIAGFRGRKMMLSTNWMASLNMLKKLRLLNCPTCEIMP--PLGQLPSLEILL 380 (625)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~p~~l~~l~~L~~L~L~~c~~l~~l~--~l~~l~~L~~L~ 380 (625)
.--++++..+++|+.|+|+.|....+. +..+..+..|+.|.|++| .+..+. .+..+.+|++|+
T Consensus 307 ------------rih~d~WsftqkL~~LdLs~N~i~~l~--~~sf~~L~~Le~LnLs~N-si~~l~e~af~~lssL~~Ld 371 (873)
T KOG4194|consen 307 ------------RIHIDSWSFTQKLKELDLSSNRITRLD--EGSFRVLSQLEELNLSHN-SIDHLAEGAFVGLSSLHKLD 371 (873)
T ss_pred ------------eeecchhhhcccceeEeccccccccCC--hhHHHHHHHhhhhccccc-chHHHHhhHHHHhhhhhhhc
Confidence 233456777899999999999988874 667889999999999994 455554 367799999999
Q ss_pred ccccccceeeCccCCCCCCCCCCCCCCCCCCCCCCCCCCeeeccCcccccccccCCCCcccCCCccEEEEecCCCCCcC-
Q 037953 381 IKDMTSVERVGDESLGIANGDHGAPSSSSVNNIAFPKLKELEFSGLQEWEDWDFRKEDITIMPQINSLSIYGCHKLKSL- 459 (625)
Q Consensus 381 L~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l- 459 (625)
|++|.---.+.+.... ..++++|+.|.+.+. +++.++... +..+++||.|++.++ .+.+|
T Consensus 372 Lr~N~ls~~IEDaa~~---------------f~gl~~LrkL~l~gN-qlk~I~krA--fsgl~~LE~LdL~~N-aiaSIq 432 (873)
T KOG4194|consen 372 LRSNELSWCIEDAAVA---------------FNGLPSLRKLRLTGN-QLKSIPKRA--FSGLEALEHLDLGDN-AIASIQ 432 (873)
T ss_pred CcCCeEEEEEecchhh---------------hccchhhhheeecCc-eeeecchhh--hccCcccceecCCCC-cceeec
Confidence 9997743344332111 556899999999875 566655332 447999999999995 56665
Q ss_pred CcCCCCCCCCCEEEEec
Q 037953 460 PDQLLQSSTLKTLRINR 476 (625)
Q Consensus 460 p~~~~~l~~L~~L~l~~ 476 (625)
|..+..+ .|++|.+..
T Consensus 433 ~nAFe~m-~Lk~Lv~nS 448 (873)
T KOG4194|consen 433 PNAFEPM-ELKELVMNS 448 (873)
T ss_pred ccccccc-hhhhhhhcc
Confidence 4445545 788877643
|
|
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.9e-24 Score=208.30 Aligned_cols=356 Identities=20% Similarity=0.231 Sum_probs=265.8
Q ss_pred CceEEEEEEcCCCCcchhhhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhhhccc
Q 037953 72 EKLRHLMLVLGYEAPSLVSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEILNGV 151 (625)
Q Consensus 72 ~~lr~L~l~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp~~~ 151 (625)
..+..+.+++|....+.+.+.++..+.+|.+++|. ...+| .+++.+..++.|+.+ +|.+..+|+.+
T Consensus 45 v~l~~lils~N~l~~l~~dl~nL~~l~vl~~~~n~---l~~lp---~aig~l~~l~~l~vs--------~n~ls~lp~~i 110 (565)
T KOG0472|consen 45 VDLQKLILSHNDLEVLREDLKNLACLTVLNVHDNK---LSQLP---AAIGELEALKSLNVS--------HNKLSELPEQI 110 (565)
T ss_pred cchhhhhhccCchhhccHhhhcccceeEEEeccch---hhhCC---HHHHHHHHHHHhhcc--------cchHhhccHHH
Confidence 35678889999998888889999999999999976 56677 889999999999999 99999999999
Q ss_pred ccccccceecC-CC-CCCCchhhcCCCCCceEeecCCCCCCccccccccccccceEEecCcccccccccCCCccccccCC
Q 037953 152 EKLIHLRYLKL-NL-VGDLPEKCCELLNLQTLELENSSHFKRFPQGIGKLINLRHLIFTEDLLEYMPKGIEKLTSLRTLS 229 (625)
Q Consensus 152 ~~L~~L~~L~L-~~-l~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~l~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~ 229 (625)
+.+..|+.|+. .+ ..++|++++.+..|+.|+..+|+ +.++|++++.+.+|..|++..|.++.+|+..-+++.|++|+
T Consensus 111 ~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~-i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld 189 (565)
T KOG0472|consen 111 GSLISLVKLDCSSNELKELPDSIGRLLDLEDLDATNNQ-ISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLD 189 (565)
T ss_pred hhhhhhhhhhccccceeecCchHHHHhhhhhhhccccc-cccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcc
Confidence 99999999999 54 99999999999999999999998 99999999999999999998899999998877799999998
Q ss_pred ceEecCCCCcCCCcccChhccccccccccceEEeccCCCCChhHHHHhccCCCCCCCeEEEEEecccccccCCccccccc
Q 037953 230 EFVVASGGGRYGSEACKLEGLRHLNHLRGSLKVRGLGNVADVDEVKNAHLEKKKNLVRLILRFKDIDKAVKRWPEAISNE 309 (625)
Q Consensus 230 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 309 (625)
...+-... .+..++.+.+|.. |++.. +.+. +...|.+|..|.+|+++.|.
T Consensus 190 ~~~N~L~t-----lP~~lg~l~~L~~----LyL~~----Nki~--~lPef~gcs~L~Elh~g~N~--------------- 239 (565)
T KOG0472|consen 190 CNSNLLET-----LPPELGGLESLEL----LYLRR----NKIR--FLPEFPGCSLLKELHVGENQ--------------- 239 (565)
T ss_pred cchhhhhc-----CChhhcchhhhHH----HHhhh----cccc--cCCCCCccHHHHHHHhcccH---------------
Confidence 65444333 4555555555443 33332 1111 12268889999999999884
Q ss_pred chhhHHHHhhcC-CCCCCCcEEEEeccCCCcccCCchhhcccccccEEEEeCCCCCCCCC-CCCCCCCcceeeccccccc
Q 037953 310 NAAKHEAICEAL-WPPPNLESLEIAGFRGRKMMLSTNWMASLNMLKKLRLLNCPTCEIMP-PLGQLPSLEILLIKDMTSV 387 (625)
Q Consensus 310 ~~~~~~~~~~~l-~~~~~L~~L~L~~~~~~~~~~~p~~l~~l~~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~L~~~~~l 387 (625)
.+.++... ..++++..|++..|+..+. |..+.-+.+|.+|++++ +.+..+| .+|++ +|+.|.+.+++ +
T Consensus 240 ----i~~lpae~~~~L~~l~vLDLRdNklke~---Pde~clLrsL~rLDlSN-N~is~Lp~sLgnl-hL~~L~leGNP-l 309 (565)
T KOG0472|consen 240 ----IEMLPAEHLKHLNSLLVLDLRDNKLKEV---PDEICLLRSLERLDLSN-NDISSLPYSLGNL-HLKFLALEGNP-L 309 (565)
T ss_pred ----HHhhHHHHhcccccceeeeccccccccC---chHHHHhhhhhhhcccC-CccccCCcccccc-eeeehhhcCCc-h
Confidence 45566554 4789999999999999998 99999999999999998 5677777 59999 99999999987 4
Q ss_pred eeeCccCCC------------------CC-----CCCCCC-CCCCCCCCCCCCCCCeeeccCcc----------------
Q 037953 388 ERVGDESLG------------------IA-----NGDHGA-PSSSSVNNIAFPKLKELEFSGLQ---------------- 427 (625)
Q Consensus 388 ~~l~~~~~~------------------~~-----~~~~~~-~~~~~~~~~~l~~L~~L~L~~~~---------------- 427 (625)
+.+-.+... .. ..+... +++........-..+.|++++-.
T Consensus 310 rTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~ 389 (565)
T KOG0472|consen 310 RTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEI 389 (565)
T ss_pred HHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcc
Confidence 433221110 00 000000 11122222333345555554310
Q ss_pred ---------cccccc---------------------cCCCCcccCCCccEEEEecCCCCCcCCcCCCCCCCCCEEEEecC
Q 037953 428 ---------EWEDWD---------------------FRKEDITIMPQINSLSIYGCHKLKSLPDQLLQSSTLKTLRINRC 477 (625)
Q Consensus 428 ---------~l~~~~---------------------~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c 477 (625)
++.+++ +.+..+..+++|..|++++ +.+-++|..++.+..|++|+|+.+
T Consensus 390 Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~N-N~Ln~LP~e~~~lv~Lq~LnlS~N 468 (565)
T KOG0472|consen 390 VTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSN-NLLNDLPEEMGSLVRLQTLNLSFN 468 (565)
T ss_pred eEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeeccc-chhhhcchhhhhhhhhheeccccc
Confidence 000110 1111145788999999998 578999999999999999999988
Q ss_pred cchhhcc
Q 037953 478 RVLEEHF 484 (625)
Q Consensus 478 ~~L~~~~ 484 (625)
.+...|
T Consensus 469 -rFr~lP 474 (565)
T KOG0472|consen 469 -RFRMLP 474 (565)
T ss_pred -ccccch
Confidence 444444
|
|
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.77 E-value=7.3e-21 Score=202.63 Aligned_cols=122 Identities=26% Similarity=0.275 Sum_probs=79.6
Q ss_pred eEEEEEEcCCCCcch-hhhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhhhcccc
Q 037953 74 LRHLMLVLGYEAPSL-VSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEILNGVE 152 (625)
Q Consensus 74 lr~L~l~~~~~~~~~-~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp~~~~ 152 (625)
+.+|++..|.+-..| +.+.++-+|++|++++|. ....| ..+..+.+|+.|+++ .|.+..+|.+.+
T Consensus 23 ~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~---~~~fp---~~it~l~~L~~ln~s--------~n~i~~vp~s~~ 88 (1081)
T KOG0618|consen 23 LQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQ---ISSFP---IQITLLSHLRQLNLS--------RNYIRSVPSSCS 88 (1081)
T ss_pred HHhhhccccccccCchHHhhheeeeEEeeccccc---cccCC---chhhhHHHHhhcccc--------hhhHhhCchhhh
Confidence 555666666553333 233344457777777765 44455 556667777777777 666777776677
Q ss_pred cccccceecC-CC-CCCCchhhcCCCCCceEeecCCCCCCccccccccccccceEEecCc
Q 037953 153 KLIHLRYLKL-NL-VGDLPEKCCELLNLQTLELENSSHFKRFPQGIGKLINLRHLIFTED 210 (625)
Q Consensus 153 ~L~~L~~L~L-~~-l~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~l~~L~~L~~L~l~~~ 210 (625)
++.+|++|+| |+ +..+|.++..+++|++||+++|. +..+|..+..++.+..++.++|
T Consensus 89 ~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~N~-f~~~Pl~i~~lt~~~~~~~s~N 147 (1081)
T KOG0618|consen 89 NMRNLQYLNLKNNRLQSLPASISELKNLQYLDLSFNH-FGPIPLVIEVLTAEEELAASNN 147 (1081)
T ss_pred hhhcchhheeccchhhcCchhHHhhhcccccccchhc-cCCCchhHHhhhHHHHHhhhcc
Confidence 7777777777 66 77777777777777777777776 6667776777777777766555
|
|
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.75 E-value=4.7e-20 Score=196.51 Aligned_cols=100 Identities=23% Similarity=0.248 Sum_probs=76.4
Q ss_pred ceEEEEEEcCCCCcchhhhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhhhcccc
Q 037953 73 KLRHLMLVLGYEAPSLVSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEILNGVE 152 (625)
Q Consensus 73 ~lr~L~l~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp~~~~ 152 (625)
++++|++++|....+|..+..+++|+.|.++.|. +...| ...+++++|++|.|. +|.+..+|.++.
T Consensus 46 ~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~---i~~vp---~s~~~~~~l~~lnL~--------~n~l~~lP~~~~ 111 (1081)
T KOG0618|consen 46 KLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNY---IRSVP---SSCSNMRNLQYLNLK--------NNRLQSLPASIS 111 (1081)
T ss_pred eeEEeeccccccccCCchhhhHHHHhhcccchhh---HhhCc---hhhhhhhcchhheec--------cchhhcCchhHH
Confidence 3778888888888888777778888888888865 55566 677888888888888 777888888888
Q ss_pred cccccceecC--CCCCCCchhhcCCCCCceEeecCC
Q 037953 153 KLIHLRYLKL--NLVGDLPEKCCELLNLQTLELENS 186 (625)
Q Consensus 153 ~L~~L~~L~L--~~l~~lP~~i~~L~~L~~L~L~~~ 186 (625)
.+++|++|++ |....+|..+..++.++.++.++|
T Consensus 112 ~lknl~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N 147 (1081)
T KOG0618|consen 112 ELKNLQYLDLSFNHFGPIPLVIEVLTAEEELAASNN 147 (1081)
T ss_pred hhhcccccccchhccCCCchhHHhhhHHHHHhhhcc
Confidence 8888888888 447777777777766666666666
|
|
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.61 E-value=9.3e-18 Score=145.11 Aligned_cols=151 Identities=26% Similarity=0.269 Sum_probs=136.1
Q ss_pred CCceEEEEEEcCCCCcchhhhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhhhcc
Q 037953 71 PEKLRHLMLVLGYEAPSLVSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEILNG 150 (625)
Q Consensus 71 ~~~lr~L~l~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp~~ 150 (625)
.+.+++|.+++|++..+|+.+..+.+|++|.+++|+ ...+| ..++++++||.|+++ -|++..+|..
T Consensus 32 ~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnq---ie~lp---~~issl~klr~lnvg--------mnrl~~lprg 97 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQ---IEELP---TSISSLPKLRILNVG--------MNRLNILPRG 97 (264)
T ss_pred hhhhhhhhcccCceeecCCcHHHhhhhhhhhcccch---hhhcC---hhhhhchhhhheecc--------hhhhhcCccc
Confidence 457899999999999999999999999999999987 77788 889999999999999 8888899999
Q ss_pred cccccccceecC--CC--CCCCchhhcCCCCCceEeecCCCCCCccccccccccccceEEecCcccccccccCCCccccc
Q 037953 151 VEKLIHLRYLKL--NL--VGDLPEKCCELLNLQTLELENSSHFKRFPQGIGKLINLRHLIFTEDLLEYMPKGIEKLTSLR 226 (625)
Q Consensus 151 ~~~L~~L~~L~L--~~--l~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~l~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~ 226 (625)
|+.++.|++||| ++ -..+|..+..++.|+.|.|+.|. +..+|.++++|++||.|.+..|.+-++|.+++.++.|+
T Consensus 98 fgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dnd-fe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lr 176 (264)
T KOG0617|consen 98 FGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDND-FEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLR 176 (264)
T ss_pred cCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCC-cccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHH
Confidence 999999999999 55 57789999999999999999998 89999999999999999998888899999999999999
Q ss_pred cCCceEecCC
Q 037953 227 TLSEFVVASG 236 (625)
Q Consensus 227 ~L~~~~~~~~ 236 (625)
.|.+..+...
T Consensus 177 elhiqgnrl~ 186 (264)
T KOG0617|consen 177 ELHIQGNRLT 186 (264)
T ss_pred HHhcccceee
Confidence 9987655443
|
|
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=6.8e-15 Score=162.19 Aligned_cols=117 Identities=23% Similarity=0.301 Sum_probs=70.3
Q ss_pred CCcEEEEeccCCCcccCCchhhcccccccEEEEeCCCCCCCCCCCCCCCCcceeeccccccceeeCccCCCCCCCCCCCC
Q 037953 326 NLESLEIAGFRGRKMMLSTNWMASLNMLKKLRLLNCPTCEIMPPLGQLPSLEILLIKDMTSVERVGDESLGIANGDHGAP 405 (625)
Q Consensus 326 ~L~~L~L~~~~~~~~~~~p~~l~~l~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~ 405 (625)
+|+.|++++|....+ |.. .++|+.|++++| .+..+|.+ .++|+.|++++|. ++.+|.
T Consensus 343 ~Lq~LdLS~N~Ls~L---P~l---p~~L~~L~Ls~N-~L~~LP~l--~~~L~~LdLs~N~-Lt~LP~------------- 399 (788)
T PRK15387 343 GLQELSVSDNQLASL---PTL---PSELYKLWAYNN-RLTSLPAL--PSGLKELIVSGNR-LTSLPV------------- 399 (788)
T ss_pred ccceEecCCCccCCC---CCC---Ccccceehhhcc-ccccCccc--ccccceEEecCCc-ccCCCC-------------
Confidence 455555555555544 432 245556666653 34445532 2456677776654 444432
Q ss_pred CCCCCCCCCCCCCCeeeccCcccccccccCCCCcccCCCccEEEEecCCCCCcCCcCCCCCCCCCEEEEecCcchh
Q 037953 406 SSSSVNNIAFPKLKELEFSGLQEWEDWDFRKEDITIMPQINSLSIYGCHKLKSLPDQLLQSSTLKTLRINRCRVLE 481 (625)
Q Consensus 406 ~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~L~ 481 (625)
..++|+.|+++++. +..++. ...+|+.|++++ +.++.+|..+.++++|+.|++++|+.-.
T Consensus 400 --------l~s~L~~LdLS~N~-LssIP~------l~~~L~~L~Ls~-NqLt~LP~sl~~L~~L~~LdLs~N~Ls~ 459 (788)
T PRK15387 400 --------LPSELKELMVSGNR-LTSLPM------LPSGLLSLSVYR-NQLTRLPESLIHLSSETTVNLEGNPLSE 459 (788)
T ss_pred --------cccCCCEEEccCCc-CCCCCc------chhhhhhhhhcc-CcccccChHHhhccCCCeEECCCCCCCc
Confidence 12457777777652 444331 134678888888 5688888888888899999998887543
|
|
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.6e-14 Score=162.64 Aligned_cols=327 Identities=24% Similarity=0.286 Sum_probs=207.4
Q ss_pred ccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccc--hhhhhcc-cccccccceecC--CC-C
Q 037953 92 FNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQ--TNEILNG-VEKLIHLRYLKL--NL-V 165 (625)
Q Consensus 92 ~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~--l~~lp~~-~~~L~~L~~L~L--~~-l 165 (625)
......|...+.++. ...++ . -..++.|++|-+. +|. +..++.. |..++.|++||| |. +
T Consensus 520 ~~~~~~rr~s~~~~~---~~~~~---~-~~~~~~L~tLll~--------~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l 584 (889)
T KOG4658|consen 520 KSWNSVRRMSLMNNK---IEHIA---G-SSENPKLRTLLLQ--------RNSDWLLEISGEFFRSLPLLRVLDLSGNSSL 584 (889)
T ss_pred cchhheeEEEEeccc---hhhcc---C-CCCCCccceEEEe--------ecchhhhhcCHHHHhhCcceEEEECCCCCcc
Confidence 456788999988876 23332 2 2355689999999 775 6666544 788999999999 55 9
Q ss_pred CCCchhhcCCCCCceEeecCCCCCCccccccccccccceEEe-cCcccccccccCCCccccccCCceEecCCCCcCCCcc
Q 037953 166 GDLPEKCCELLNLQTLELENSSHFKRFPQGIGKLINLRHLIF-TEDLLEYMPKGIEKLTSLRTLSEFVVASGGGRYGSEA 244 (625)
Q Consensus 166 ~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~l~~L~~L~~L~l-~~~~l~~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~~ 244 (625)
..+|++|++|.+||+|+++++. +..+|.++++|++|.+|++ ....+..+|.....|++|++|.+....... ..
T Consensus 585 ~~LP~~I~~Li~LryL~L~~t~-I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~-----~~ 658 (889)
T KOG4658|consen 585 SKLPSSIGELVHLRYLDLSDTG-ISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSN-----DK 658 (889)
T ss_pred CcCChHHhhhhhhhcccccCCC-ccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeecccccc-----ch
Confidence 9999999999999999999999 9999999999999999999 455555665556669999999886554221 25
Q ss_pred cChhccccccccccceEEeccCCCCChhHHHHhccCCCCCCCeEEEEEecccccccCCcccccccchhhHHHHhhcCCCC
Q 037953 245 CKLEGLRHLNHLRGSLKVRGLGNVADVDEVKNAHLEKKKNLVRLILRFKDIDKAVKRWPEAISNENAAKHEAICEALWPP 324 (625)
Q Consensus 245 ~~l~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 324 (625)
..++++.+|.+|+ .+.+..... .....+..+.+|..+...-.. ... ........+..+
T Consensus 659 ~~l~el~~Le~L~-~ls~~~~s~------~~~e~l~~~~~L~~~~~~l~~---------~~~------~~~~~~~~~~~l 716 (889)
T KOG4658|consen 659 LLLKELENLEHLE-NLSITISSV------LLLEDLLGMTRLRSLLQSLSI---------EGC------SKRTLISSLGSL 716 (889)
T ss_pred hhHHhhhcccchh-hheeecchh------HhHhhhhhhHHHHHHhHhhhh---------ccc------ccceeecccccc
Confidence 6677788888887 676643211 111122333333322211000 000 123445567778
Q ss_pred CCCcEEEEeccCCCcccCCchhhc-----c-cccccEEEEeCCCCCCCCCCCCCCCCcceeeccccccceeeCccCCCCC
Q 037953 325 PNLESLEIAGFRGRKMMLSTNWMA-----S-LNMLKKLRLLNCPTCEIMPPLGQLPSLEILLIKDMTSVERVGDESLGIA 398 (625)
Q Consensus 325 ~~L~~L~L~~~~~~~~~~~p~~l~-----~-l~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~ 398 (625)
.+|+.|.+.+|...+.. ..|.. . ++++..+.+.+|.....+.+....|+|+.|.+..|..++.+........
T Consensus 717 ~~L~~L~i~~~~~~e~~--~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~ 794 (889)
T KOG4658|consen 717 GNLEELSILDCGISEIV--IEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALL 794 (889)
T ss_pred cCcceEEEEcCCCchhh--cccccccchhhhHHHHHHHHhhccccccccchhhccCcccEEEEecccccccCCCHHHHhh
Confidence 88999999888876431 12211 2 5677777777787777777766788899999988887766543211111
Q ss_pred CCCCCCCCCCCCCCCCCCCCCee-eccCcccccccccCCCCcccCCCccEEEEecCCCCCcCCcCCCCCCCCCEEEEecC
Q 037953 399 NGDHGAPSSSSVNNIAFPKLKEL-EFSGLQEWEDWDFRKEDITIMPQINSLSIYGCHKLKSLPDQLLQSSTLKTLRINRC 477 (625)
Q Consensus 399 ~~~~~~~~~~~~~~~~l~~L~~L-~L~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c 477 (625)
.+.+ ....|.++..+ .+.+...++.+...+- .+++|+.+.+..|++++.+| .+.++.+.+|
T Consensus 795 ~l~~--------~i~~f~~~~~l~~~~~l~~l~~i~~~~l---~~~~l~~~~ve~~p~l~~~P-------~~~~~~i~~~ 856 (889)
T KOG4658|consen 795 ELKE--------LILPFNKLEGLRMLCSLGGLPQLYWLPL---SFLKLEELIVEECPKLGKLP-------LLSTLTIVGC 856 (889)
T ss_pred hccc--------EEecccccccceeeecCCCCceeEeccc---CccchhheehhcCcccccCc-------cccccceecc
Confidence 1000 02344444444 3444444444433332 34556666666666555443 4445556665
Q ss_pred -cchh
Q 037953 478 -RVLE 481 (625)
Q Consensus 478 -~~L~ 481 (625)
+.+.
T Consensus 857 ~~~~~ 861 (889)
T KOG4658|consen 857 EEKLK 861 (889)
T ss_pred cccee
Confidence 4443
|
|
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.51 E-value=4.2e-16 Score=134.90 Aligned_cols=143 Identities=27% Similarity=0.260 Sum_probs=129.5
Q ss_pred cccCCCCceEEEEEEcCCCCcchhhhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchh
Q 037953 66 LINTCPEKLRHLMLVLGYEAPSLVSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTN 145 (625)
Q Consensus 66 ~~~~~~~~lr~L~l~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~ 145 (625)
+......++..|.+++|+++++|.++..+++||.|.+.-|+ ...+| .-|+.++.|++|||. +|.+.
T Consensus 50 pnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnr---l~~lp---rgfgs~p~levldlt--------ynnl~ 115 (264)
T KOG0617|consen 50 PNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNR---LNILP---RGFGSFPALEVLDLT--------YNNLN 115 (264)
T ss_pred CcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhh---hhcCc---cccCCCchhhhhhcc--------ccccc
Confidence 33344678999999999999999999999999999999887 66778 889999999999999 88854
Q ss_pred --hhhcccccccccceecC--CCCCCCchhhcCCCCCceEeecCCCCCCccccccccccccceEEecCcccccccccCCC
Q 037953 146 --EILNGVEKLIHLRYLKL--NLVGDLPEKCCELLNLQTLELENSSHFKRFPQGIGKLINLRHLIFTEDLLEYMPKGIEK 221 (625)
Q Consensus 146 --~lp~~~~~L~~L~~L~L--~~l~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~l~~L~~L~~L~l~~~~l~~lp~~i~~ 221 (625)
.+|..|..+..|+.|+| +..+.+|..+++|++||.|.++.|. +-++|.+++.|++|++|++.+|.++.+|.++++
T Consensus 116 e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdnd-ll~lpkeig~lt~lrelhiqgnrl~vlppel~~ 194 (264)
T KOG0617|consen 116 ENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDND-LLSLPKEIGDLTRLRELHIQGNRLTVLPPELAN 194 (264)
T ss_pred cccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCc-hhhCcHHHHHHHHHHHHhcccceeeecChhhhh
Confidence 68999999999999999 4499999999999999999999999 889999999999999999999999999998876
Q ss_pred cc
Q 037953 222 LT 223 (625)
Q Consensus 222 L~ 223 (625)
+.
T Consensus 195 l~ 196 (264)
T KOG0617|consen 195 LD 196 (264)
T ss_pred hh
Confidence 54
|
|
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=4.6e-14 Score=156.65 Aligned_cols=225 Identities=17% Similarity=0.200 Sum_probs=127.8
Q ss_pred ceEEEEEEcCCCCcchhhhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhhhcccc
Q 037953 73 KLRHLMLVLGYEAPSLVSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEILNGVE 152 (625)
Q Consensus 73 ~lr~L~l~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp~~~~ 152 (625)
+...|.+.++++..+|..+. +.|+.|++++|. ...+| ..+. ++|++|+++ +|.+..+|..+.
T Consensus 179 ~~~~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N~---LtsLP---~~l~--~nL~~L~Ls--------~N~LtsLP~~l~ 240 (754)
T PRK15370 179 NKTELRLKILGLTTIPACIP--EQITTLILDNNE---LKSLP---ENLQ--GNIKTLYAN--------SNQLTSIPATLP 240 (754)
T ss_pred CceEEEeCCCCcCcCCcccc--cCCcEEEecCCC---CCcCC---hhhc--cCCCEEECC--------CCccccCChhhh
Confidence 45667777777666666543 467777777764 33445 3332 467777777 666666765543
Q ss_pred cccccceecC-CC-CCCCchhhcCCCCCceEeecCCCCCCccccccccccccceEEecCcccccccccCCCccccccCCc
Q 037953 153 KLIHLRYLKL-NL-VGDLPEKCCELLNLQTLELENSSHFKRFPQGIGKLINLRHLIFTEDLLEYMPKGIEKLTSLRTLSE 230 (625)
Q Consensus 153 ~L~~L~~L~L-~~-l~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~l~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~~ 230 (625)
.+|+.|+| ++ +..+|..+. .+|+.|++++|. +..+|..+. ++|++|++++|.++.+|..+. ++|+.|++
T Consensus 241 --~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~N~-L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~L 311 (754)
T PRK15370 241 --DTIQEMELSINRITELPERLP--SALQSLDLFHNK-ISCLPENLP--EELRYLSVYDNSIRTLPAHLP--SGITHLNV 311 (754)
T ss_pred --ccccEEECcCCccCcCChhHh--CCCCEEECcCCc-cCccccccC--CCCcEEECCCCccccCcccch--hhHHHHHh
Confidence 36777777 33 667776654 467777777776 667776553 467777776677766665442 24444444
Q ss_pred eEecCCCCcCCCcccChhccccccccccceEEeccCCCCChhHHHHhccCCCCCCCeEEEEEecccccccCCcccccccc
Q 037953 231 FVVASGGGRYGSEACKLEGLRHLNHLRGSLKVRGLGNVADVDEVKNAHLEKKKNLVRLILRFKDIDKAVKRWPEAISNEN 310 (625)
Q Consensus 231 ~~~~~~~~~~~~~~~~l~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 310 (625)
..+.... ++. .+ .++|+.|++++|.++
T Consensus 312 s~N~Lt~-----LP~--------------------------------~l--~~sL~~L~Ls~N~Lt-------------- 338 (754)
T PRK15370 312 QSNSLTA-----LPE--------------------------------TL--PPGLKTLEAGENALT-------------- 338 (754)
T ss_pred cCCcccc-----CCc--------------------------------cc--cccceeccccCCccc--------------
Confidence 3322111 000 00 134555566555321
Q ss_pred hhhHHHHhhcCCCCCCCcEEEEeccCCCcccCCchhhcccccccEEEEeCCCCCCCCCC-CCCCCCcceeecccccccee
Q 037953 311 AAKHEAICEALWPPPNLESLEIAGFRGRKMMLSTNWMASLNMLKKLRLLNCPTCEIMPP-LGQLPSLEILLIKDMTSVER 389 (625)
Q Consensus 311 ~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~p~~l~~l~~L~~L~L~~c~~l~~l~~-l~~l~~L~~L~L~~~~~l~~ 389 (625)
.++..+ +++|+.|++++|....+ |..+. ++|+.|+|++|. +..+|. + .++|+.|++++|. +..
T Consensus 339 -----~LP~~l--~~sL~~L~Ls~N~L~~L---P~~lp--~~L~~LdLs~N~-Lt~LP~~l--~~sL~~LdLs~N~-L~~ 402 (754)
T PRK15370 339 -----SLPASL--PPELQVLDVSKNQITVL---PETLP--PTITTLDVSRNA-LTNLPENL--PAALQIMQASRNN-LVR 402 (754)
T ss_pred -----cCChhh--cCcccEEECCCCCCCcC---Chhhc--CCcCEEECCCCc-CCCCCHhH--HHHHHHHhhccCC-ccc
Confidence 122222 24677777777666555 55442 567777777753 445553 2 1357777777654 555
Q ss_pred eCcc
Q 037953 390 VGDE 393 (625)
Q Consensus 390 l~~~ 393 (625)
+|..
T Consensus 403 LP~s 406 (754)
T PRK15370 403 LPES 406 (754)
T ss_pred Cchh
Confidence 5543
|
|
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.6e-14 Score=140.89 Aligned_cols=126 Identities=18% Similarity=0.205 Sum_probs=91.2
Q ss_pred CCCCceEEEEEEcCCCCcchh-hhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccc-cchhh
Q 037953 69 TCPEKLRHLMLVLGYEAPSLV-SIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEE-DQTNE 146 (625)
Q Consensus 69 ~~~~~lr~L~l~~~~~~~~~~-~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~-~~l~~ 146 (625)
..|++...+.|..|++..+|+ +|..+++||.|+|+.|. +..+-| ++|.+++.|-.|-+. + |.|++
T Consensus 64 ~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~--Is~I~p---~AF~GL~~l~~Lvly--------g~NkI~~ 130 (498)
T KOG4237|consen 64 NLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNN--ISFIAP---DAFKGLASLLSLVLY--------GNNKITD 130 (498)
T ss_pred cCCCcceEEEeccCCcccCChhhccchhhhceecccccc--hhhcCh---HhhhhhHhhhHHHhh--------cCCchhh
Confidence 456777788888888877764 67778888888888854 455556 778888887777776 4 66888
Q ss_pred hhcc-cccccccceecC--CCCCCCc-hhhcCCCCCceEeecCCCCCCcccc-ccccccccceEEec
Q 037953 147 ILNG-VEKLIHLRYLKL--NLVGDLP-EKCCELLNLQTLELENSSHFKRFPQ-GIGKLINLRHLIFT 208 (625)
Q Consensus 147 lp~~-~~~L~~L~~L~L--~~l~~lP-~~i~~L~~L~~L~L~~~~~l~~lp~-~l~~L~~L~~L~l~ 208 (625)
+|.. |++|..|+-|.+ |.+..++ +.+..|++|..|.+..|. +..++. .+..+..++++.+.
T Consensus 131 l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~-~q~i~~~tf~~l~~i~tlhlA 196 (498)
T KOG4237|consen 131 LPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNK-IQSICKGTFQGLAAIKTLHLA 196 (498)
T ss_pred hhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchh-hhhhccccccchhccchHhhh
Confidence 8754 777888888777 4455554 457777788888887777 777776 37777777777773
|
|
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.4e-13 Score=152.86 Aligned_cols=223 Identities=17% Similarity=0.227 Sum_probs=158.8
Q ss_pred CCCceEEEEEEcCCCCcchhhhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhhhc
Q 037953 70 CPEKLRHLMLVLGYEAPSLVSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEILN 149 (625)
Q Consensus 70 ~~~~lr~L~l~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp~ 149 (625)
.+++++.|.+.+|.+..+|..+. ++|++|++++|. ...+| ..+. .+|+.|+|+ +|.+..+|.
T Consensus 197 Ip~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~---LtsLP---~~l~--~~L~~L~Ls--------~N~L~~LP~ 258 (754)
T PRK15370 197 IPEQITTLILDNNELKSLPENLQ--GNIKTLYANSNQ---LTSIP---ATLP--DTIQEMELS--------INRITELPE 258 (754)
T ss_pred cccCCcEEEecCCCCCcCChhhc--cCCCEEECCCCc---cccCC---hhhh--ccccEEECc--------CCccCcCCh
Confidence 46789999999999999988764 699999999975 34566 5443 479999999 889889987
Q ss_pred ccccccccceecC-CC-CCCCchhhcCCCCCceEeecCCCCCCccccccccccccceEEecCcccccccccCCCcccccc
Q 037953 150 GVEKLIHLRYLKL-NL-VGDLPEKCCELLNLQTLELENSSHFKRFPQGIGKLINLRHLIFTEDLLEYMPKGIEKLTSLRT 227 (625)
Q Consensus 150 ~~~~L~~L~~L~L-~~-l~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~l~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~ 227 (625)
.+. .+|++|++ ++ +..+|..+. .+|++|++++|. ++.+|..+. ++|++|++++|.+..+|..+. ++|+.
T Consensus 259 ~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~-Lt~LP~~lp--~sL~~L~Ls~N~Lt~LP~~l~--~sL~~ 329 (754)
T PRK15370 259 RLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDNS-IRTLPAHLP--SGITHLNVQSNSLTALPETLP--PGLKT 329 (754)
T ss_pred hHh--CCCCEEECcCCccCccccccC--CCCcEEECCCCc-cccCcccch--hhHHHHHhcCCccccCCcccc--cccee
Confidence 765 58999999 66 889998775 589999999998 999987654 579999998899998886553 56777
Q ss_pred CCceEecCCCCcCCCcccChhccccccccccceEEeccCCCCChhHHHHhccCCCCCCCeEEEEEecccccccCCccccc
Q 037953 228 LSEFVVASGGGRYGSEACKLEGLRHLNHLRGSLKVRGLGNVADVDEVKNAHLEKKKNLVRLILRFKDIDKAVKRWPEAIS 307 (625)
Q Consensus 228 L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 307 (625)
|.+..+.... ++. .+ .++|+.|++++|.+.
T Consensus 330 L~Ls~N~Lt~-----LP~--------------------------------~l--~~sL~~L~Ls~N~L~----------- 359 (754)
T PRK15370 330 LEAGENALTS-----LPA--------------------------------SL--PPELQVLDVSKNQIT----------- 359 (754)
T ss_pred ccccCCcccc-----CCh--------------------------------hh--cCcccEEECCCCCCC-----------
Confidence 6654332211 000 01 135667777766421
Q ss_pred ccchhhHHHHhhcCCCCCCCcEEEEeccCCCcccCCchhhcccccccEEEEeCCCCCCCCCC-----CCCCCCcceeecc
Q 037953 308 NENAAKHEAICEALWPPPNLESLEIAGFRGRKMMLSTNWMASLNMLKKLRLLNCPTCEIMPP-----LGQLPSLEILLIK 382 (625)
Q Consensus 308 ~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~p~~l~~l~~L~~L~L~~c~~l~~l~~-----l~~l~~L~~L~L~ 382 (625)
.++..+ +++|+.|++++|....+ |..+. ..|+.|++++|. +..+|. .+.++++..|++.
T Consensus 360 --------~LP~~l--p~~L~~LdLs~N~Lt~L---P~~l~--~sL~~LdLs~N~-L~~LP~sl~~~~~~~~~l~~L~L~ 423 (754)
T PRK15370 360 --------VLPETL--PPTITTLDVSRNALTNL---PENLP--AALQIMQASRNN-LVRLPESLPHFRGEGPQPTRIIVE 423 (754)
T ss_pred --------cCChhh--cCCcCEEECCCCcCCCC---CHhHH--HHHHHHhhccCC-cccCchhHHHHhhcCCCccEEEee
Confidence 122222 25788888888777666 66553 467888888754 445552 3445778888887
Q ss_pred ccc
Q 037953 383 DMT 385 (625)
Q Consensus 383 ~~~ 385 (625)
+|+
T Consensus 424 ~Np 426 (754)
T PRK15370 424 YNP 426 (754)
T ss_pred CCC
Confidence 766
|
|
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=8.9e-13 Score=145.61 Aligned_cols=233 Identities=18% Similarity=0.110 Sum_probs=132.6
Q ss_pred CCceEEEEEEcCCCCcchhhhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhhhcc
Q 037953 71 PEKLRHLMLVLGYEAPSLVSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEILNG 150 (625)
Q Consensus 71 ~~~lr~L~l~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp~~ 150 (625)
+.+++.|.+.+|.+..+|.. .++|++|++++|. ...+| .. .++|+.|+++ +|.+..+|..
T Consensus 221 ~~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~---LtsLP---~l---p~sL~~L~Ls--------~N~L~~Lp~l 280 (788)
T PRK15387 221 PAHITTLVIPDNNLTSLPAL---PPELRTLEVSGNQ---LTSLP---VL---PPGLLELSIF--------SNPLTHLPAL 280 (788)
T ss_pred hcCCCEEEccCCcCCCCCCC---CCCCcEEEecCCc---cCccc---Cc---ccccceeecc--------CCchhhhhhc
Confidence 34667777777777666642 4667777777754 22334 21 3566777777 6666666642
Q ss_pred cccccccceecC-CC-CCCCchhhcCCCCCceEeecCCCCCCccccccccccccceEEecCcccccccccCCCccccccC
Q 037953 151 VEKLIHLRYLKL-NL-VGDLPEKCCELLNLQTLELENSSHFKRFPQGIGKLINLRHLIFTEDLLEYMPKGIEKLTSLRTL 228 (625)
Q Consensus 151 ~~~L~~L~~L~L-~~-l~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~l~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L 228 (625)
+ .+|+.|++ .+ +..+|.. +++|++|++++|. +..+|... .+|+.|++++|.++.+|.. ..+|+.|
T Consensus 281 p---~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~-L~~Lp~lp---~~L~~L~Ls~N~L~~LP~l---p~~Lq~L 347 (788)
T PRK15387 281 P---SGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQ-LASLPALP---SELCKLWAYNNQLTSLPTL---PSGLQEL 347 (788)
T ss_pred h---hhcCEEECcCCcccccccc---ccccceeECCCCc-cccCCCCc---ccccccccccCcccccccc---ccccceE
Confidence 2 45666777 33 6666642 3567777777776 66666532 3466666766767666642 2356666
Q ss_pred CceEecCCCCcCCCcccChhccccccccccceEEeccCCCCChhHHHHhccCCCCCCCeEEEEEecccccccCCcccccc
Q 037953 229 SEFVVASGGGRYGSEACKLEGLRHLNHLRGSLKVRGLGNVADVDEVKNAHLEKKKNLVRLILRFKDIDKAVKRWPEAISN 308 (625)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 308 (625)
++.++.... ++..+ .++. .|.+.+.. +..+ +. ...+|+.|++++|.++
T Consensus 348 dLS~N~Ls~-----LP~lp---~~L~----~L~Ls~N~-L~~L----P~---l~~~L~~LdLs~N~Lt------------ 395 (788)
T PRK15387 348 SVSDNQLAS-----LPTLP---SELY----KLWAYNNR-LTSL----PA---LPSGLKELIVSGNRLT------------ 395 (788)
T ss_pred ecCCCccCC-----CCCCC---cccc----eehhhccc-cccC----cc---cccccceEEecCCccc------------
Confidence 665544332 12111 1222 23222210 1111 11 1246777777776421
Q ss_pred cchhhHHHHhhcCCCCCCCcEEEEeccCCCcccCCchhhcccccccEEEEeCCCCCCCCCC-CCCCCCcceeeccccc
Q 037953 309 ENAAKHEAICEALWPPPNLESLEIAGFRGRKMMLSTNWMASLNMLKKLRLLNCPTCEIMPP-LGQLPSLEILLIKDMT 385 (625)
Q Consensus 309 ~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~p~~l~~l~~L~~L~L~~c~~l~~l~~-l~~l~~L~~L~L~~~~ 385 (625)
.++. ..++|+.|++++|....+ |... .+|+.|++++| .++.+|. ++.+++|+.|+|++|+
T Consensus 396 -------~LP~---l~s~L~~LdLS~N~LssI---P~l~---~~L~~L~Ls~N-qLt~LP~sl~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 396 -------SLPV---LPSELKELMVSGNRLTSL---PMLP---SGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNP 456 (788)
T ss_pred -------CCCC---cccCCCEEEccCCcCCCC---Ccch---hhhhhhhhccC-cccccChHHhhccCCCeEECCCCC
Confidence 1221 135677888888776665 6532 46777788774 4556774 6778888888888776
|
|
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.40 E-value=4.1e-14 Score=138.12 Aligned_cols=142 Identities=21% Similarity=0.200 Sum_probs=117.1
Q ss_pred EEEEcCCCCcchhhhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhh-hccccccc
Q 037953 77 LMLVLGYEAPSLVSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEI-LNGVEKLI 155 (625)
Q Consensus 77 L~l~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~l-p~~~~~L~ 155 (625)
++-++.++.++|..++ +.-..++|..|. +...+| .+|+.+++||.|||| +|.|..| |++|..+.
T Consensus 51 VdCr~~GL~eVP~~LP--~~tveirLdqN~--I~~iP~---~aF~~l~~LRrLdLS--------~N~Is~I~p~AF~GL~ 115 (498)
T KOG4237|consen 51 VDCRGKGLTEVPANLP--PETVEIRLDQNQ--ISSIPP---GAFKTLHRLRRLDLS--------KNNISFIAPDAFKGLA 115 (498)
T ss_pred EEccCCCcccCcccCC--CcceEEEeccCC--cccCCh---hhccchhhhceeccc--------ccchhhcChHhhhhhH
Confidence 3344455677887664 567788899965 566667 999999999999999 9999988 88899999
Q ss_pred ccceecC--CC-CCCCchh-hcCCCCCceEeecCCCCCCccccc-cccccccceEEecCcccccccc-cCCCccccccCC
Q 037953 156 HLRYLKL--NL-VGDLPEK-CCELLNLQTLELENSSHFKRFPQG-IGKLINLRHLIFTEDLLEYMPK-GIEKLTSLRTLS 229 (625)
Q Consensus 156 ~L~~L~L--~~-l~~lP~~-i~~L~~L~~L~L~~~~~l~~lp~~-l~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~ 229 (625)
.|..|-+ ++ |+++|+. +++|..|+.|.+.-|+ +..++.. +..|++|..|.+..|.+..++. .+..+.+++++.
T Consensus 116 ~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~-i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlh 194 (498)
T KOG4237|consen 116 SLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANH-INCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLH 194 (498)
T ss_pred hhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhh-hcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHh
Confidence 9999888 45 9999975 8899999999999998 7766655 8999999999999999999987 477888888877
Q ss_pred ceEec
Q 037953 230 EFVVA 234 (625)
Q Consensus 230 ~~~~~ 234 (625)
+..+.
T Consensus 195 lA~np 199 (498)
T KOG4237|consen 195 LAQNP 199 (498)
T ss_pred hhcCc
Confidence 65443
|
|
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.6e-12 Score=131.68 Aligned_cols=138 Identities=22% Similarity=0.232 Sum_probs=64.9
Q ss_pred hhhccCCcceEEEeecccCCcc--ccCchhhHHHhcCCceeEEEeecCCCccccccchhhhhcccccccccceecC--CC
Q 037953 89 VSIFNAIKLRSLILFYWIPNLD--AMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEILNGVEKLIHLRYLKL--NL 164 (625)
Q Consensus 89 ~~~~~l~~Lr~L~L~~~~~~~~--~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp~~~~~L~~L~~L~L--~~ 164 (625)
..+..++.|+.|+++++..... ..++ ..+...+.|+.|+++++.... ....+..++..+.++++|++|++ |.
T Consensus 17 ~~~~~l~~L~~l~l~~~~l~~~~~~~i~---~~l~~~~~l~~l~l~~~~~~~-~~~~~~~~~~~l~~~~~L~~L~l~~~~ 92 (319)
T cd00116 17 ELLPKLLCLQVLRLEGNTLGEEAAKALA---SALRPQPSLKELCLSLNETGR-IPRGLQSLLQGLTKGCGLQELDLSDNA 92 (319)
T ss_pred HHHHHHhhccEEeecCCCCcHHHHHHHH---HHHhhCCCceEEeccccccCC-cchHHHHHHHHHHhcCceeEEEccCCC
Confidence 3444555566666666541100 1123 445556666666666322100 00012334445556666666666 33
Q ss_pred CC-CCchhhcCCCC---CceEeecCCCCCC-----ccccccccc-cccceEEecCcccc-----cccccCCCccccccCC
Q 037953 165 VG-DLPEKCCELLN---LQTLELENSSHFK-----RFPQGIGKL-INLRHLIFTEDLLE-----YMPKGIEKLTSLRTLS 229 (625)
Q Consensus 165 l~-~lP~~i~~L~~---L~~L~L~~~~~l~-----~lp~~l~~L-~~L~~L~l~~~~l~-----~lp~~i~~L~~L~~L~ 229 (625)
+. ..+..+..+.+ |++|++++|. +. .+...+..+ ++|+.|+++++.++ .++..+..+++|++|+
T Consensus 93 ~~~~~~~~~~~l~~~~~L~~L~ls~~~-~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~ 171 (319)
T cd00116 93 LGPDGCGVLESLLRSSSLQELKLNNNG-LGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELN 171 (319)
T ss_pred CChhHHHHHHHHhccCcccEEEeeCCc-cchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEE
Confidence 32 34444444443 6666666665 43 122234445 66666666555443 2222333344455554
Q ss_pred ce
Q 037953 230 EF 231 (625)
Q Consensus 230 ~~ 231 (625)
+.
T Consensus 172 l~ 173 (319)
T cd00116 172 LA 173 (319)
T ss_pred Cc
Confidence 43
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.5e-12 Score=131.81 Aligned_cols=123 Identities=22% Similarity=0.220 Sum_probs=79.8
Q ss_pred EEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccch-----hhhhcccccccccceecC--CCCCC-----
Q 037953 100 LILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQT-----NEILNGVEKLIHLRYLKL--NLVGD----- 167 (625)
Q Consensus 100 L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l-----~~lp~~~~~L~~L~~L~L--~~l~~----- 167 (625)
|+|.++.. .....+ ..+..+.+|++|+++ ++.+ ..++..+...++|++|++ +.+..
T Consensus 3 l~L~~~~l-~~~~~~---~~~~~l~~L~~l~l~--------~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~ 70 (319)
T cd00116 3 LSLKGELL-KTERAT---ELLPKLLCLQVLRLE--------GNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGL 70 (319)
T ss_pred cccccCcc-cccchH---HHHHHHhhccEEeec--------CCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHH
Confidence 45555431 123334 678888999999999 5554 456777888888999999 33442
Q ss_pred --CchhhcCCCCCceEeecCCCCCCccccccccccc---cceEEecCccccc-----ccccCCCc-cccccCCceEec
Q 037953 168 --LPEKCCELLNLQTLELENSSHFKRFPQGIGKLIN---LRHLIFTEDLLEY-----MPKGIEKL-TSLRTLSEFVVA 234 (625)
Q Consensus 168 --lP~~i~~L~~L~~L~L~~~~~l~~lp~~l~~L~~---L~~L~l~~~~l~~-----lp~~i~~L-~~L~~L~~~~~~ 234 (625)
++..+.++++|+.|++++|......+..+..+.+ |++|+++++.+.. +...+..+ ++|+.|++..+.
T Consensus 71 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~ 148 (319)
T cd00116 71 QSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNR 148 (319)
T ss_pred HHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCc
Confidence 3456778999999999999833345555665655 9999997766542 12223334 455555544433
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.4e-11 Score=125.87 Aligned_cols=143 Identities=23% Similarity=0.255 Sum_probs=114.7
Q ss_pred EEEEEcCCCCcchh--hhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhhhccccc
Q 037953 76 HLMLVLGYEAPSLV--SIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEILNGVEK 153 (625)
Q Consensus 76 ~L~l~~~~~~~~~~--~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp~~~~~ 153 (625)
++.|++-....+|. .-..+..-...+++.|+ ...+| ..+..+..|..|.|. +|.+..+|.++++
T Consensus 54 ~l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR---~~elp---~~~~~f~~Le~liLy--------~n~~r~ip~~i~~ 119 (722)
T KOG0532|consen 54 RLLLSGRRLKEFPRGAASYDLTDTVFADLSRNR---FSELP---EEACAFVSLESLILY--------HNCIRTIPEAICN 119 (722)
T ss_pred ccccccchhhcCCCccccccccchhhhhccccc---cccCc---hHHHHHHHHHHHHHH--------hccceecchhhhh
Confidence 34444444445543 22445666677888876 56667 778888899999999 8889999999999
Q ss_pred ccccceecC-CC-CCCCchhhcCCCCCceEeecCCCCCCccccccccccccceEEecCcccccccccCCCccccccCCce
Q 037953 154 LIHLRYLKL-NL-VGDLPEKCCELLNLQTLELENSSHFKRFPQGIGKLINLRHLIFTEDLLEYMPKGIEKLTSLRTLSEF 231 (625)
Q Consensus 154 L~~L~~L~L-~~-l~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~l~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~~~ 231 (625)
+..|.+||| .+ +..+|..++.|+ |+.|-+++|+ ++.+|..++.+.+|.+||.++|.+..+|..++.+.+|+.|.+.
T Consensus 120 L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNk-l~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vr 197 (722)
T KOG0532|consen 120 LEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNK-LTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVR 197 (722)
T ss_pred hhHHHHhhhccchhhcCChhhhcCc-ceeEEEecCc-cccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHh
Confidence 999999999 44 999999999888 9999999998 9999999998899999999999999999999989988888765
Q ss_pred Eec
Q 037953 232 VVA 234 (625)
Q Consensus 232 ~~~ 234 (625)
.+.
T Consensus 198 Rn~ 200 (722)
T KOG0532|consen 198 RNH 200 (722)
T ss_pred hhh
Confidence 444
|
|
| >KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.91 E-value=8.5e-11 Score=120.33 Aligned_cols=148 Identities=19% Similarity=0.233 Sum_probs=100.8
Q ss_pred eEEEEEEcCCCCcchhhhccCCcceEEEeecccCCccccCchhhHHHhcCCc----------------------eeEEEe
Q 037953 74 LRHLMLVLGYEAPSLVSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTC----------------------LRALRI 131 (625)
Q Consensus 74 lr~L~l~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~----------------------Lr~L~L 131 (625)
....+++.|.+.++|..+..|..|..+.|..|. ...+| ..+.++.. |++|.+
T Consensus 77 t~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~---~r~ip---~~i~~L~~lt~l~ls~NqlS~lp~~lC~lpLkvli~ 150 (722)
T KOG0532|consen 77 TVFADLSRNRFSELPEEACAFVSLESLILYHNC---IRTIP---EAICNLEALTFLDLSSNQLSHLPDGLCDLPLKVLIV 150 (722)
T ss_pred hhhhhccccccccCchHHHHHHHHHHHHHHhcc---ceecc---hhhhhhhHHHHhhhccchhhcCChhhhcCcceeEEE
Confidence 344555555555555554444445544444443 23333 34444444 455555
Q ss_pred ecCCCccccccchhhhhcccccccccceecC-CC-CCCCchhhcCCCCCceEeecCCCCCCccccccccccccceEEecC
Q 037953 132 EGTDNWELEEDQTNEILNGVEKLIHLRYLKL-NL-VGDLPEKCCELLNLQTLELENSSHFKRFPQGIGKLINLRHLIFTE 209 (625)
Q Consensus 132 s~c~~~~~~~~~l~~lp~~~~~L~~L~~L~L-~~-l~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~l~~L~~L~~L~l~~ 209 (625)
+ +|+++.+|..++.+.+|..||. ++ +.++|..++.+.+|+.|.++.|+ +..+|++++.| .|..||++|
T Consensus 151 s--------NNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~-l~~lp~El~~L-pLi~lDfSc 220 (722)
T KOG0532|consen 151 S--------NNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNH-LEDLPEELCSL-PLIRLDFSC 220 (722)
T ss_pred e--------cCccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhh-hhhCCHHHhCC-ceeeeeccc
Confidence 5 6667777777777777888887 44 88888888888888888888887 77888887754 588888899
Q ss_pred cccccccccCCCccccccCCceEecCCC
Q 037953 210 DLLEYMPKGIEKLTSLRTLSEFVVASGG 237 (625)
Q Consensus 210 ~~l~~lp~~i~~L~~L~~L~~~~~~~~~ 237 (625)
|++..+|..+.+|+.|++|.+-++...+
T Consensus 221 Nkis~iPv~fr~m~~Lq~l~LenNPLqS 248 (722)
T KOG0532|consen 221 NKISYLPVDFRKMRHLQVLQLENNPLQS 248 (722)
T ss_pred CceeecchhhhhhhhheeeeeccCCCCC
Confidence 9999999888889888888877666554
|
|
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=98.82 E-value=2.3e-09 Score=97.51 Aligned_cols=127 Identities=28% Similarity=0.285 Sum_probs=48.1
Q ss_pred ccCCcceEEEeecccCCccccCchhhHHHh-cCCceeEEEeecCCCccccccchhhhhcccccccccceecC-CC-CCCC
Q 037953 92 FNAIKLRSLILFYWIPNLDAMLPVLKGIFD-QLTCLRALRIEGTDNWELEEDQTNEILNGVEKLIHLRYLKL-NL-VGDL 168 (625)
Q Consensus 92 ~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~-~l~~Lr~L~Ls~c~~~~~~~~~l~~lp~~~~~L~~L~~L~L-~~-l~~l 168 (625)
.+..++|.|+|.+|.. ..+. .++ .+.+|++|+|+ +|.+..++ .+..+++|++|++ ++ +.++
T Consensus 16 ~n~~~~~~L~L~~n~I---~~Ie----~L~~~l~~L~~L~Ls--------~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i 79 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQI---STIE----NLGATLDKLEVLDLS--------NNQITKLE-GLPGLPRLKTLDLSNNRISSI 79 (175)
T ss_dssp ---------------------------S--TT-TT--EEE-T--------TS--S--T-T----TT--EEE--SS---S-
T ss_pred cccccccccccccccc---cccc----chhhhhcCCCEEECC--------CCCCcccc-CccChhhhhhcccCCCCCCcc
Confidence 4555678888888762 2221 133 56778888888 77777775 5777888888888 44 7777
Q ss_pred chhh-cCCCCCceEeecCCCCCCcccc--ccccccccceEEecCcccccccc----cCCCccccccCCceEecC
Q 037953 169 PEKC-CELLNLQTLELENSSHFKRFPQ--GIGKLINLRHLIFTEDLLEYMPK----GIEKLTSLRTLSEFVVAS 235 (625)
Q Consensus 169 P~~i-~~L~~L~~L~L~~~~~l~~lp~--~l~~L~~L~~L~l~~~~l~~lp~----~i~~L~~L~~L~~~~~~~ 235 (625)
++.+ ..+++|++|++++|. +.++-. .++.+++|++|++.+|.+...+. -+..+++|+.|+...+..
T Consensus 80 ~~~l~~~lp~L~~L~L~~N~-I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~V~~ 152 (175)
T PF14580_consen 80 SEGLDKNLPNLQELYLSNNK-ISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQDVTE 152 (175)
T ss_dssp CHHHHHH-TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEETTS
T ss_pred ccchHHhCCcCCEEECcCCc-CCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEEccH
Confidence 6555 357888888888887 665432 36677888888887777665542 255677777777655443
|
|
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=98.78 E-value=3.4e-09 Score=96.45 Aligned_cols=120 Identities=28% Similarity=0.216 Sum_probs=52.1
Q ss_pred CCceEEEEEEcCCCCcchhhhc-cCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhhhc
Q 037953 71 PEKLRHLMLVLGYEAPSLVSIF-NAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEILN 149 (625)
Q Consensus 71 ~~~lr~L~l~~~~~~~~~~~~~-~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp~ 149 (625)
+.+.|.|++.+|.+..+. .+. .+.+|++|++++|. ...++ .+..+++|++|+++ +|.+..+++
T Consensus 18 ~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~---I~~l~----~l~~L~~L~~L~L~--------~N~I~~i~~ 81 (175)
T PF14580_consen 18 PVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQ---ITKLE----GLPGLPRLKTLDLS--------NNRISSISE 81 (175)
T ss_dssp -------------------S--TT-TT--EEE-TTS-----S--T----T----TT--EEE----------SS---S-CH
T ss_pred cccccccccccccccccc-chhhhhcCCCEEECCCCC---Ccccc----CccChhhhhhcccC--------CCCCCcccc
Confidence 457899999999986664 344 57899999999987 33332 37789999999999 999998865
Q ss_pred cc-ccccccceecC-CC-CCCCc--hhhcCCCCCceEeecCCCCCCcccc----ccccccccceEEe
Q 037953 150 GV-EKLIHLRYLKL-NL-VGDLP--EKCCELLNLQTLELENSSHFKRFPQ----GIGKLINLRHLIF 207 (625)
Q Consensus 150 ~~-~~L~~L~~L~L-~~-l~~lP--~~i~~L~~L~~L~L~~~~~l~~lp~----~l~~L~~L~~L~l 207 (625)
.+ ..+++|+.|++ ++ +..+- ..+..+++|++|+|.+|+ +..-+. .+..+++|+.||-
T Consensus 82 ~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NP-v~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 82 GLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNP-VCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp HHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-G-GGGSTTHHHHHHHH-TT-SEETT
T ss_pred chHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCc-ccchhhHHHHHHHHcChhheeCC
Confidence 55 46899999999 44 65543 467889999999999999 776543 2788999999997
|
|
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.77 E-value=9.5e-10 Score=104.16 Aligned_cols=130 Identities=25% Similarity=0.174 Sum_probs=98.3
Q ss_pred CCCceEEEEEEcCCCCcchhhhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhhhc
Q 037953 70 CPEKLRHLMLVLGYEAPSLVSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEILN 149 (625)
Q Consensus 70 ~~~~lr~L~l~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp~ 149 (625)
.|+.+..+++++|.+..+.+++.-.|++|.|+++.|. ...+ +.+..+++|+.|||| +|.+.++-.
T Consensus 282 TWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~---i~~v----~nLa~L~~L~~LDLS--------~N~Ls~~~G 346 (490)
T KOG1259|consen 282 TWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNR---IRTV----QNLAELPQLQLLDLS--------GNLLAECVG 346 (490)
T ss_pred hHhhhhhccccccchhhhhhhhhhccceeEEeccccc---eeee----hhhhhcccceEeecc--------cchhHhhhh
Confidence 4667888888888888888887778888888888865 2222 347788888888888 888777766
Q ss_pred ccccccccceecC-CC-CCCCchhhcCCCCCceEeecCCCCCCccc--cccccccccceEEecCccccccc
Q 037953 150 GVEKLIHLRYLKL-NL-VGDLPEKCCELLNLQTLELENSSHFKRFP--QGIGKLINLRHLIFTEDLLEYMP 216 (625)
Q Consensus 150 ~~~~L~~L~~L~L-~~-l~~lP~~i~~L~~L~~L~L~~~~~l~~lp--~~l~~L~~L~~L~l~~~~l~~lp 216 (625)
.-.++-+.+.|.| .+ ++++ +.+++|.+|.+||+++|+ +..+- .+|++|+.|+++.+.+|.+..+|
T Consensus 347 wh~KLGNIKtL~La~N~iE~L-SGL~KLYSLvnLDl~~N~-Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~v 415 (490)
T KOG1259|consen 347 WHLKLGNIKTLKLAQNKIETL-SGLRKLYSLVNLDLSSNQ-IEELDEVNHIGNLPCLETLRLTGNPLAGSV 415 (490)
T ss_pred hHhhhcCEeeeehhhhhHhhh-hhhHhhhhheeccccccc-hhhHHHhcccccccHHHHHhhcCCCccccc
Confidence 6667778888888 44 7777 578888888888888887 76553 34788888888888777776665
|
|
| >KOG4341 consensus F-box protein containing LRR [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.2e-09 Score=108.32 Aligned_cols=59 Identities=19% Similarity=0.114 Sum_probs=30.6
Q ss_pred ccceecC--CC---CCCCchhhcCCCCCceEeecCCCCCCccc--cccccccccceEEe-cCccccc
Q 037953 156 HLRYLKL--NL---VGDLPEKCCELLNLQTLELENSSHFKRFP--QGIGKLINLRHLIF-TEDLLEY 214 (625)
Q Consensus 156 ~L~~L~L--~~---l~~lP~~i~~L~~L~~L~L~~~~~l~~lp--~~l~~L~~L~~L~l-~~~~l~~ 214 (625)
-|+.|.+ |. ...+-....+++++++|++.+|..+++-. .--..+.+|++|++ +|..++.
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~ 205 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITD 205 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHH
Confidence 3666666 33 22222334566677777777776554311 11234566777776 5555443
|
|
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.64 E-value=2e-08 Score=106.15 Aligned_cols=188 Identities=21% Similarity=0.257 Sum_probs=128.4
Q ss_pred EEEEcCCCCcchhhhccCCcceEEEeecccCCccccCchhhHHHhcCC-ceeEEEeecCCCccccccchhhhhccccccc
Q 037953 77 LMLVLGYEAPSLVSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLT-CLRALRIEGTDNWELEEDQTNEILNGVEKLI 155 (625)
Q Consensus 77 L~l~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~-~Lr~L~Ls~c~~~~~~~~~l~~lp~~~~~L~ 155 (625)
+.+..+........+...+.++.|++.++. ...+| .....++ +|+.|+++ +|.+..+|..++.++
T Consensus 98 l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~---i~~i~---~~~~~~~~nL~~L~l~--------~N~i~~l~~~~~~l~ 163 (394)
T COG4886 98 LDLNLNRLRSNISELLELTNLTSLDLDNNN---ITDIP---PLIGLLKSNLKELDLS--------DNKIESLPSPLRNLP 163 (394)
T ss_pred eeccccccccCchhhhcccceeEEecCCcc---cccCc---cccccchhhccccccc--------ccchhhhhhhhhccc
Confidence 455555543334455666788888888865 34444 4455564 88899998 888888887788889
Q ss_pred ccceecC-CC-CCCCchhhcCCCCCceEeecCCCCCCccccccccccccceEEecCcccccccccCCCccccccCCceEe
Q 037953 156 HLRYLKL-NL-VGDLPEKCCELLNLQTLELENSSHFKRFPQGIGKLINLRHLIFTEDLLEYMPKGIEKLTSLRTLSEFVV 233 (625)
Q Consensus 156 ~L~~L~L-~~-l~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~l~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~~~~~ 233 (625)
+|+.|++ .+ +..+|...+.+.+|+.|++++|. +..+|..+..+..|++|.++.|....++..+.++.++..+.+..+
T Consensus 164 ~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~N~-i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n 242 (394)
T COG4886 164 NLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNK-ISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNN 242 (394)
T ss_pred cccccccCCchhhhhhhhhhhhhhhhheeccCCc-cccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCc
Confidence 9999999 44 88888877788889999999888 888888777777788888877766666677777777777764333
Q ss_pred cCCCCcCCCcccChhccccccccccceEEeccCCCCChhHHHHhccCCCCCCCeEEEEEec
Q 037953 234 ASGGGRYGSEACKLEGLRHLNHLRGSLKVRGLGNVADVDEVKNAHLEKKKNLVRLILRFKD 294 (625)
Q Consensus 234 ~~~~~~~~~~~~~l~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 294 (625)
.... .+.....+..++ .+.+++.. .... . .+....+++.|+++++.
T Consensus 243 ~~~~--------~~~~~~~l~~l~-~L~~s~n~----i~~i-~-~~~~~~~l~~L~~s~n~ 288 (394)
T COG4886 243 KLED--------LPESIGNLSNLE-TLDLSNNQ----ISSI-S-SLGSLTNLRELDLSGNS 288 (394)
T ss_pred eeee--------ccchhccccccc-eecccccc----cccc-c-cccccCccCEEeccCcc
Confidence 3221 123333344444 55554422 1111 1 17778889999988774
|
|
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.61 E-value=2.3e-08 Score=105.66 Aligned_cols=168 Identities=26% Similarity=0.266 Sum_probs=140.2
Q ss_pred CceEEEEEEcCCCCcchhhhccCC-cceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhhhcc
Q 037953 72 EKLRHLMLVLGYEAPSLVSIFNAI-KLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEILNG 150 (625)
Q Consensus 72 ~~lr~L~l~~~~~~~~~~~~~~l~-~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp~~ 150 (625)
..++.+.+.++.+..+++...... +|+.|++++|. ...+| ..+..+++|+.|+++ +|.+.++|..
T Consensus 116 ~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~---i~~l~---~~~~~l~~L~~L~l~--------~N~l~~l~~~ 181 (394)
T COG4886 116 TNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNK---IESLP---SPLRNLPNLKNLDLS--------FNDLSDLPKL 181 (394)
T ss_pred cceeEEecCCcccccCccccccchhhcccccccccc---hhhhh---hhhhccccccccccC--------Cchhhhhhhh
Confidence 468999999999999988877774 99999999987 55554 568999999999999 9999999987
Q ss_pred cccccccceecC-CC-CCCCchhhcCCCCCceEeecCCCCCCccccccccccccceEEecCcccccccccCCCccccccC
Q 037953 151 VEKLIHLRYLKL-NL-VGDLPEKCCELLNLQTLELENSSHFKRFPQGIGKLINLRHLIFTEDLLEYMPKGIEKLTSLRTL 228 (625)
Q Consensus 151 ~~~L~~L~~L~L-~~-l~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~l~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L 228 (625)
.+.+++|+.|++ .+ +..+|..+..+..|++|.+++|. +...+..+.+++++..|.+.++.+..++..++.+++++.|
T Consensus 182 ~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~-~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L 260 (394)
T COG4886 182 LSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNS-IIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETL 260 (394)
T ss_pred hhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCc-ceecchhhhhcccccccccCCceeeeccchhcccccccee
Confidence 779999999999 44 99999988888999999999997 6677788999999999999999888888889999999999
Q ss_pred CceEecCCCCcCCCcccChhccccccccccceEEec
Q 037953 229 SEFVVASGGGRYGSEACKLEGLRHLNHLRGSLKVRG 264 (625)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~L~l~~ 264 (625)
++..+.... ... +..+..++ .+.+++
T Consensus 261 ~~s~n~i~~------i~~---~~~~~~l~-~L~~s~ 286 (394)
T COG4886 261 DLSNNQISS------ISS---LGSLTNLR-ELDLSG 286 (394)
T ss_pred ccccccccc------ccc---ccccCccC-EEeccC
Confidence 987776554 222 44555555 566554
|
|
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.3e-08 Score=96.64 Aligned_cols=124 Identities=21% Similarity=0.222 Sum_probs=76.1
Q ss_pred CCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhhhcccccccccceecC-CC-CCCCchh
Q 037953 94 AIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEILNGVEKLIHLRYLKL-NL-VGDLPEK 171 (625)
Q Consensus 94 l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp~~~~~L~~L~~L~L-~~-l~~lP~~ 171 (625)
++.|.+++|++|. +..+. ++..-.+.+|+|++| +|.+..+- ++..+++|+.||| ++ +..+-..
T Consensus 283 Wq~LtelDLS~N~---I~~iD---ESvKL~Pkir~L~lS--------~N~i~~v~-nLa~L~~L~~LDLS~N~Ls~~~Gw 347 (490)
T KOG1259|consen 283 WQELTELDLSGNL---ITQID---ESVKLAPKLRRLILS--------QNRIRTVQ-NLAELPQLQLLDLSGNLLAECVGW 347 (490)
T ss_pred Hhhhhhccccccc---hhhhh---hhhhhccceeEEecc--------ccceeeeh-hhhhcccceEeecccchhHhhhhh
Confidence 4456666777654 33343 556666667777777 66665554 3666667777777 44 5555444
Q ss_pred hcCCCCCceEeecCCCCCCccccccccccccceEEecCccccccc--ccCCCccccccCCceEec
Q 037953 172 CCELLNLQTLELENSSHFKRFPQGIGKLINLRHLIFTEDLLEYMP--KGIEKLTSLRTLSEFVVA 234 (625)
Q Consensus 172 i~~L~~L~~L~L~~~~~l~~lp~~l~~L~~L~~L~l~~~~l~~lp--~~i~~L~~L~~L~~~~~~ 234 (625)
=.+|-+.+.|.|++|. +.++ .++++|.+|..||+..|+++.+. .+||+++.|+++.+.+++
T Consensus 348 h~KLGNIKtL~La~N~-iE~L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 348 HLKLGNIKTLKLAQNK-IETL-SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred HhhhcCEeeeehhhhh-Hhhh-hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCC
Confidence 4456666667777766 6655 45667777777777666665553 346666666666655443
|
|
| >KOG4341 consensus F-box protein containing LRR [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.49 E-value=9.8e-09 Score=101.88 Aligned_cols=150 Identities=14% Similarity=0.131 Sum_probs=81.9
Q ss_pred HhhcCCCCCCCcEEEEeccCCCcccCCchhhcccccccEEEEeCCCCCCCCC--CC-CCCCCcceeeccccccceeeCcc
Q 037953 317 ICEALWPPPNLESLEIAGFRGRKMMLSTNWMASLNMLKKLRLLNCPTCEIMP--PL-GQLPSLEILLIKDMTSVERVGDE 393 (625)
Q Consensus 317 ~~~~l~~~~~L~~L~L~~~~~~~~~~~p~~l~~l~~L~~L~L~~c~~l~~l~--~l-~~l~~L~~L~L~~~~~l~~l~~~ 393 (625)
+...-..+..|+.|+.+++.......+-.-..+.++|+.|.+..|...++.. .+ .+.+.|+.+++.+|..+..- .
T Consensus 286 ~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~--t 363 (483)
T KOG4341|consen 286 LWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDG--T 363 (483)
T ss_pred HHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhh--h
Confidence 3333444566777777666553310000111256777777777777665543 22 34677777777766532211 1
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCeeeccCccccccccc--CCCCcccCCCccEEEEecCCCCCc-CCcCCCCCCCCC
Q 037953 394 SLGIANGDHGAPSSSSVNNIAFPKLKELEFSGLQEWEDWDF--RKEDITIMPQINSLSIYGCHKLKS-LPDQLLQSSTLK 470 (625)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~--~~~~~~~l~~L~~L~l~~c~~l~~-lp~~~~~l~~L~ 470 (625)
+... ..++|.|+.|.+++|....+-.+ ......++..|+.|.+++|+.+++ .-..+..+++|+
T Consensus 364 L~sl--------------s~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Le 429 (483)
T KOG4341|consen 364 LASL--------------SRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLE 429 (483)
T ss_pred Hhhh--------------ccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccc
Confidence 1111 45677777777777765544311 111122566777777777777654 222334466777
Q ss_pred EEEEecCcchhh
Q 037953 471 TLRINRCRVLEE 482 (625)
Q Consensus 471 ~L~l~~c~~L~~ 482 (625)
.+++.+|.....
T Consensus 430 ri~l~~~q~vtk 441 (483)
T KOG4341|consen 430 RIELIDCQDVTK 441 (483)
T ss_pred eeeeechhhhhh
Confidence 777777766554
|
|
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.48 E-value=4.1e-08 Score=98.10 Aligned_cols=69 Identities=22% Similarity=0.185 Sum_probs=45.5
Q ss_pred HHHhhcCCCCCCCcEEEEeccCCCcccCCchhhcccccccEEEEeCCCCCCC--CCCCCCCCCcceeeccccc
Q 037953 315 EAICEALWPPPNLESLEIAGFRGRKMMLSTNWMASLNMLKKLRLLNCPTCEI--MPPLGQLPSLEILLIKDMT 385 (625)
Q Consensus 315 ~~~~~~l~~~~~L~~L~L~~~~~~~~~~~p~~l~~l~~L~~L~L~~c~~l~~--l~~l~~l~~L~~L~L~~~~ 385 (625)
..+...+..+|+|+.|.+.+|...... .....-+..|+.|+|++++.+.. .+..+.+|.|+.|+++.|.
T Consensus 212 k~V~~~~~~fPsl~~L~L~~N~~~~~~--~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tg 282 (505)
T KOG3207|consen 212 KDVQWILLTFPSLEVLYLEANEIILIK--ATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTG 282 (505)
T ss_pred HHHHHHHHhCCcHHHhhhhccccccee--cchhhhhhHHhhccccCCcccccccccccccccchhhhhccccC
Confidence 444455566788888888877432210 23334567888899988665542 3457888888888888765
|
|
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.39 E-value=3.8e-08 Score=98.32 Aligned_cols=138 Identities=17% Similarity=0.126 Sum_probs=67.9
Q ss_pred CcchhhhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchh---hhhcccccccccceec
Q 037953 85 APSLVSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTN---EILNGVEKLIHLRYLK 161 (625)
Q Consensus 85 ~~~~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~---~lp~~~~~L~~L~~L~ 161 (625)
+.+...-.++.+||...|.++. ....+ .+.....|+++|.|||| +|-+. .+-.-...|++|+.|+
T Consensus 111 Dki~akQsn~kkL~~IsLdn~~---V~~~~-~~~~~k~~~~v~~LdLS--------~NL~~nw~~v~~i~eqLp~Le~LN 178 (505)
T KOG3207|consen 111 DKIAAKQSNLKKLREISLDNYR---VEDAG-IEEYSKILPNVRDLDLS--------RNLFHNWFPVLKIAEQLPSLENLN 178 (505)
T ss_pred HHHHHHhhhHHhhhheeecCcc---ccccc-hhhhhhhCCcceeecch--------hhhHHhHHHHHHHHHhcccchhcc
Confidence 3444444556667776666654 22211 00245566777777777 44432 2222345666777777
Q ss_pred C-CC-CCCCch--hhcCCCCCceEeecCCCCCC--ccccccccccccceEEecCc-ccccccccCCCccccccCCceEec
Q 037953 162 L-NL-VGDLPE--KCCELLNLQTLELENSSHFK--RFPQGIGKLINLRHLIFTED-LLEYMPKGIEKLTSLRTLSEFVVA 234 (625)
Q Consensus 162 L-~~-l~~lP~--~i~~L~~L~~L~L~~~~~l~--~lp~~l~~L~~L~~L~l~~~-~l~~lp~~i~~L~~L~~L~~~~~~ 234 (625)
| .+ +...-+ .-..+.+|+.|.|+.|. +. ++-......++|+.|++..| .+..-......++.|+.|++..+.
T Consensus 179 ls~Nrl~~~~~s~~~~~l~~lK~L~l~~CG-ls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~ 257 (505)
T KOG3207|consen 179 LSSNRLSNFISSNTTLLLSHLKQLVLNSCG-LSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNN 257 (505)
T ss_pred cccccccCCccccchhhhhhhheEEeccCC-CCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCc
Confidence 7 22 222211 12356667777777776 44 12222445567777777444 221111112235556666655444
Q ss_pred C
Q 037953 235 S 235 (625)
Q Consensus 235 ~ 235 (625)
.
T Consensus 258 l 258 (505)
T KOG3207|consen 258 L 258 (505)
T ss_pred c
Confidence 3
|
|
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.32 E-value=1.2e-08 Score=96.76 Aligned_cols=34 Identities=15% Similarity=0.067 Sum_probs=16.9
Q ss_pred ceEEeccCCCCChhHHHHhccCCCCCCCeEEEEEec
Q 037953 259 SLKVRGLGNVADVDEVKNAHLEKKKNLVRLILRFKD 294 (625)
Q Consensus 259 ~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 294 (625)
.+.++.+.+++. ......+.+|+.|.+|+++||.
T Consensus 238 ~lnlsm~sG~t~--n~~~ll~~scs~L~~LNlsWc~ 271 (419)
T KOG2120|consen 238 RLNLSMCSGFTE--NALQLLLSSCSRLDELNLSWCF 271 (419)
T ss_pred eeccccccccch--hHHHHHHHhhhhHhhcCchHhh
Confidence 445555544433 2223335556666666666553
|
|
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.29 E-value=1.4e-06 Score=96.84 Aligned_cols=89 Identities=26% Similarity=0.439 Sum_probs=62.7
Q ss_pred ceeEEEeecCCCccccccch-hhhhcccccccccceecC--CC-CCCCchhhcCCCCCceEeecCCCCCCcccccccccc
Q 037953 125 CLRALRIEGTDNWELEEDQT-NEILNGVEKLIHLRYLKL--NL-VGDLPEKCCELLNLQTLELENSSHFKRFPQGIGKLI 200 (625)
Q Consensus 125 ~Lr~L~Ls~c~~~~~~~~~l-~~lp~~~~~L~~L~~L~L--~~-l~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~l~~L~ 200 (625)
.++.|+|+ +|.+ +.+|..++.+++|+.|+| |. .+.+|..++++++|+.|+|++|...+.+|..+++|+
T Consensus 419 ~v~~L~L~--------~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~ 490 (623)
T PLN03150 419 FIDGLGLD--------NQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLT 490 (623)
T ss_pred EEEEEECC--------CCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCC
Confidence 36777777 6664 366777777888888888 44 457777788888888888888874446777778888
Q ss_pred ccceEEecCcccc-cccccCCC
Q 037953 201 NLRHLIFTEDLLE-YMPKGIEK 221 (625)
Q Consensus 201 ~L~~L~l~~~~l~-~lp~~i~~ 221 (625)
+|++|++++|.+. .+|..++.
T Consensus 491 ~L~~L~Ls~N~l~g~iP~~l~~ 512 (623)
T PLN03150 491 SLRILNLNGNSLSGRVPAALGG 512 (623)
T ss_pred CCCEEECcCCcccccCChHHhh
Confidence 8888888555543 66766554
|
|
| >KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.28 E-value=2.4e-07 Score=90.21 Aligned_cols=98 Identities=21% Similarity=0.145 Sum_probs=61.0
Q ss_pred HHHhccCCCCCCCeEEEEEecccccccCCcccccccchhhHHHHhhcCCCCCCCcEEEEeccCCCccc--CCchhh-ccc
Q 037953 274 VKNAHLEKKKNLVRLILRFKDIDKAVKRWPEAISNENAAKHEAICEALWPPPNLESLEIAGFRGRKMM--LSTNWM-ASL 350 (625)
Q Consensus 274 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~--~~p~~l-~~l 350 (625)
.....+..+++|+.|+++.|.++ .+ -...+...+..+++|+.|+++.|....-- .+-..+ ...
T Consensus 204 al~eal~~~~~LevLdl~DNtft------~e--------gs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~ 269 (382)
T KOG1909|consen 204 ALAEALEHCPHLEVLDLRDNTFT------LE--------GSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESA 269 (382)
T ss_pred HHHHHHHhCCcceeeecccchhh------hH--------HHHHHHHHhcccchheeecccccccccccHHHHHHHHhccC
Confidence 45566778888888888887543 00 12344556677788888888877654310 001111 256
Q ss_pred ccccEEEEeCCCCCCC----CC-CCCCCCCcceeeccccc
Q 037953 351 NMLKKLRLLNCPTCEI----MP-PLGQLPSLEILLIKDMT 385 (625)
Q Consensus 351 ~~L~~L~L~~c~~l~~----l~-~l~~l~~L~~L~L~~~~ 385 (625)
|+|+.|.+.+|....+ +. .....|.|+.|+|++|.
T Consensus 270 p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 270 PSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred CCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence 8888888888653322 11 24458888999998876
|
|
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.25 E-value=1.7e-06 Score=96.11 Aligned_cols=102 Identities=24% Similarity=0.353 Sum_probs=86.5
Q ss_pred cceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchh-hhhcccccccccceecC--CC-CCCCchh
Q 037953 96 KLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTN-EILNGVEKLIHLRYLKL--NL-VGDLPEK 171 (625)
Q Consensus 96 ~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~-~lp~~~~~L~~L~~L~L--~~-l~~lP~~ 171 (625)
.++.|+|++|. +.+.+| ..++.+++|+.|+|+ +|.+. .+|..++.+++|++|+| |. .+.+|+.
T Consensus 419 ~v~~L~L~~n~--L~g~ip---~~i~~L~~L~~L~Ls--------~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~ 485 (623)
T PLN03150 419 FIDGLGLDNQG--LRGFIP---NDISKLRHLQSINLS--------GNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPES 485 (623)
T ss_pred EEEEEECCCCC--ccccCC---HHHhCCCCCCEEECC--------CCcccCcCChHHhCCCCCCEEECCCCCCCCCCchH
Confidence 48889999964 567788 889999999999999 88864 78989999999999999 44 5689999
Q ss_pred hcCCCCCceEeecCCCCCCccccccccc-cccceEEecCc
Q 037953 172 CCELLNLQTLELENSSHFKRFPQGIGKL-INLRHLIFTED 210 (625)
Q Consensus 172 i~~L~~L~~L~L~~~~~l~~lp~~l~~L-~~L~~L~l~~~ 210 (625)
++++++|++|+|++|...+.+|..++.+ .++..+++.+|
T Consensus 486 l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N 525 (623)
T PLN03150 486 LGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDN 525 (623)
T ss_pred HhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCC
Confidence 9999999999999999556899888764 56778888555
|
|
| >KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.13 E-value=5.5e-07 Score=87.81 Aligned_cols=256 Identities=20% Similarity=0.125 Sum_probs=125.6
Q ss_pred CCceEEEEEEcCCCC-----cchhhhccCCcceEEEeeccc-CCccccCc----hhhHHHhcCCceeEEEeecCCCcccc
Q 037953 71 PEKLRHLMLVLGYEA-----PSLVSIFNAIKLRSLILFYWI-PNLDAMLP----VLKGIFDQLTCLRALRIEGTDNWELE 140 (625)
Q Consensus 71 ~~~lr~L~l~~~~~~-----~~~~~~~~l~~Lr~L~L~~~~-~~~~~~lp----~~~~~~~~l~~Lr~L~Ls~c~~~~~~ 140 (625)
...++.+.+++|.++ .+.+.+.+.+.||.-++++-- ......+| .+...+..+++|++||||
T Consensus 29 ~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLS-------- 100 (382)
T KOG1909|consen 29 MDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLS-------- 100 (382)
T ss_pred cCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecc--------
Confidence 346788888888772 233455666777777777632 00111111 112445567788888888
Q ss_pred ccchh-----hhhcccccccccceecC-CC-CCCCchh-hcCCCCCceEeecCCCCCCccccccccccccceEEecCccc
Q 037953 141 EDQTN-----EILNGVEKLIHLRYLKL-NL-VGDLPEK-CCELLNLQTLELENSSHFKRFPQGIGKLINLRHLIFTEDLL 212 (625)
Q Consensus 141 ~~~l~-----~lp~~~~~L~~L~~L~L-~~-l~~lP~~-i~~L~~L~~L~L~~~~~l~~lp~~l~~L~~L~~L~l~~~~l 212 (625)
+|.++ .+-+-+..+..|+.|.| |. ++..-.. +++ .|..|. .-..++.-++|+++..+.|.+
T Consensus 101 DNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~--al~~l~---------~~kk~~~~~~Lrv~i~~rNrl 169 (382)
T KOG1909|consen 101 DNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGR--ALFELA---------VNKKAASKPKLRVFICGRNRL 169 (382)
T ss_pred ccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHH--HHHHHH---------HHhccCCCcceEEEEeecccc
Confidence 66643 12222344555555555 22 3322110 000 000000 000122334566666666655
Q ss_pred ccccc-----cCCCccccccCCceEecCCCCcCCCcccChhccccccccccceEEeccCCCCChhHHHHhccCCCCCCCe
Q 037953 213 EYMPK-----GIEKLTSLRTLSEFVVASGGGRYGSEACKLEGLRHLNHLRGSLKVRGLGNVADVDEVKNAHLEKKKNLVR 287 (625)
Q Consensus 213 ~~lp~-----~i~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~ 287 (625)
..-+. .+...+.|..+.+..+.... +.+......+..+++|+ +|+++...--..-.......+..+++|+.
T Consensus 170 en~ga~~~A~~~~~~~~leevr~~qN~I~~---eG~~al~eal~~~~~Le-vLdl~DNtft~egs~~LakaL~s~~~L~E 245 (382)
T KOG1909|consen 170 ENGGATALAEAFQSHPTLEEVRLSQNGIRP---EGVTALAEALEHCPHLE-VLDLRDNTFTLEGSVALAKALSSWPHLRE 245 (382)
T ss_pred ccccHHHHHHHHHhccccceEEEecccccC---chhHHHHHHHHhCCcce-eeecccchhhhHHHHHHHHHhcccchhee
Confidence 44331 23333444444443333322 11112223455666666 66665522111112234455677778888
Q ss_pred EEEEEecccccccCCcccccccchhhHHHHhhcCC-CCCCCcEEEEeccCCCccc--CCchhhcccccccEEEEeCCCC
Q 037953 288 LILRFKDIDKAVKRWPEAISNENAAKHEAICEALW-PPPNLESLEIAGFRGRKMM--LSTNWMASLNMLKKLRLLNCPT 363 (625)
Q Consensus 288 L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~L~~L~L~~~~~~~~~--~~p~~l~~l~~L~~L~L~~c~~ 363 (625)
|++++|.+. .+ -...+.+.+. ..+.|+.|.+.+|....-. .+-..+...+.|..|+|++|..
T Consensus 246 l~l~dcll~------~~--------Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 246 LNLGDCLLE------NE--------GAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred ecccccccc------cc--------cHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 888877532 11 1233444432 3678888888887654310 0022334678899999988754
|
|
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=98.12 E-value=2.5e-06 Score=63.58 Aligned_cols=56 Identities=29% Similarity=0.424 Sum_probs=28.5
Q ss_pred CceeEEEeecCCCccccccchhhhhc-ccccccccceecC-CC-CCCCch-hhcCCCCCceEeecCCC
Q 037953 124 TCLRALRIEGTDNWELEEDQTNEILN-GVEKLIHLRYLKL-NL-VGDLPE-KCCELLNLQTLELENSS 187 (625)
Q Consensus 124 ~~Lr~L~Ls~c~~~~~~~~~l~~lp~-~~~~L~~L~~L~L-~~-l~~lP~-~i~~L~~L~~L~L~~~~ 187 (625)
++|++|+++ +|.+..+|. .|..+++|++|++ ++ +..+|. .+.++++|++|++++|+
T Consensus 1 p~L~~L~l~--------~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLS--------NNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEET--------SSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECC--------CCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 356666666 666666653 3445555555555 22 444432 34445555555554443
|
... |
| >KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.07 E-value=4.9e-07 Score=95.89 Aligned_cols=125 Identities=22% Similarity=0.264 Sum_probs=81.5
Q ss_pred cCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhhhcccccccccceecC-CC-CCCCch
Q 037953 93 NAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEILNGVEKLIHLRYLKL-NL-VGDLPE 170 (625)
Q Consensus 93 ~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp~~~~~L~~L~~L~L-~~-l~~lP~ 170 (625)
.+..+..+.+..|. +.. .- ..+..+++|..|++. +|.+..+...+..+.+|++|++ .+ |..+ .
T Consensus 70 ~l~~l~~l~l~~n~--i~~-~~---~~l~~~~~l~~l~l~--------~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i-~ 134 (414)
T KOG0531|consen 70 SLTSLKELNLRQNL--IAK-IL---NHLSKLKSLEALDLY--------DNKIEKIENLLSSLVNLQVLDLSFNKITKL-E 134 (414)
T ss_pred HhHhHHhhccchhh--hhh-hh---cccccccceeeeecc--------ccchhhcccchhhhhcchheeccccccccc-c
Confidence 45556666666643 222 11 336677778888887 7777777644777778888888 33 7777 4
Q ss_pred hhcCCCCCceEeecCCCCCCccccccccccccceEEecCccccccccc-CCCccccccCCceEec
Q 037953 171 KCCELLNLQTLELENSSHFKRFPQGIGKLINLRHLIFTEDLLEYMPKG-IEKLTSLRTLSEFVVA 234 (625)
Q Consensus 171 ~i~~L~~L~~L~L~~~~~l~~lp~~l~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~~~~~~ 234 (625)
.+..++.|+.|++++|. +..++ ++..+++|+.++++.|.+..+... ...+.+++.+.+..+.
T Consensus 135 ~l~~l~~L~~L~l~~N~-i~~~~-~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~ 197 (414)
T KOG0531|consen 135 GLSTLTLLKELNLSGNL-ISDIS-GLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNS 197 (414)
T ss_pred chhhccchhhheeccCc-chhcc-CCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCc
Confidence 67777778888888887 66663 466677788888877777666542 3556666666654443
|
|
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Probab=98.06 E-value=1.6e-05 Score=81.43 Aligned_cols=143 Identities=15% Similarity=0.245 Sum_probs=84.1
Q ss_pred HHHhhcCCCCCCCcEEEEeccCCCcccCCchhhcccccccEEEEeCCCCCCCCCCCCCCCCcceeeccccccceeeCccC
Q 037953 315 EAICEALWPPPNLESLEIAGFRGRKMMLSTNWMASLNMLKKLRLLNCPTCEIMPPLGQLPSLEILLIKDMTSVERVGDES 394 (625)
Q Consensus 315 ~~~~~~l~~~~~L~~L~L~~~~~~~~~~~p~~l~~l~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~~~~l~~l~~~~ 394 (625)
......+..+.+++.|++++|....+ |. -.++|+.|.+++|..++.+|.. -.++|+.|++++|..+..+|...
T Consensus 42 ~~a~~r~~~~~~l~~L~Is~c~L~sL---P~---LP~sLtsL~Lsnc~nLtsLP~~-LP~nLe~L~Ls~Cs~L~sLP~sL 114 (426)
T PRK15386 42 SEITPQIEEARASGRLYIKDCDIESL---PV---LPNELTEITIENCNNLTTLPGS-IPEGLEKLTVCHCPEISGLPESV 114 (426)
T ss_pred HHHHHHHHHhcCCCEEEeCCCCCccc---CC---CCCCCcEEEccCCCCcccCCch-hhhhhhheEccCccccccccccc
Confidence 34444566679999999999977776 62 2357999999999998888841 13689999999998788777543
Q ss_pred CCCCCCCCCCCCC-CCCCCCCC-CCCCeeeccCcccccccccCCCCcccC-CCccEEEEecCCCCCcCCcCCCCCCCCCE
Q 037953 395 LGIANGDHGAPSS-SSVNNIAF-PKLKELEFSGLQEWEDWDFRKEDITIM-PQINSLSIYGCHKLKSLPDQLLQSSTLKT 471 (625)
Q Consensus 395 ~~~~~~~~~~~~~-~~~~~~~l-~~L~~L~L~~~~~l~~~~~~~~~~~~l-~~L~~L~l~~c~~l~~lp~~~~~l~~L~~ 471 (625)
..+. ++. ....+..+ ++|+.|.+.+......+.... .+ ++|++|.+++|..+ .+|..+ ..+|+.
T Consensus 115 e~L~------L~~n~~~~L~~LPssLk~L~I~~~n~~~~~~lp~----~LPsSLk~L~Is~c~~i-~LP~~L--P~SLk~ 181 (426)
T PRK15386 115 RSLE------IKGSATDSIKNVPNGLTSLSINSYNPENQARIDN----LISPSLKTLSLTGCSNI-ILPEKL--PESLQS 181 (426)
T ss_pred ceEE------eCCCCCcccccCcchHhheecccccccccccccc----ccCCcccEEEecCCCcc-cCcccc--cccCcE
Confidence 2221 110 00012233 245555553322111111000 12 46777777776543 344433 256777
Q ss_pred EEEecC
Q 037953 472 LRINRC 477 (625)
Q Consensus 472 L~l~~c 477 (625)
|+++.+
T Consensus 182 L~ls~n 187 (426)
T PRK15386 182 ITLHIE 187 (426)
T ss_pred EEeccc
Confidence 776654
|
|
| >KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.01 E-value=5.4e-07 Score=95.58 Aligned_cols=106 Identities=27% Similarity=0.423 Sum_probs=86.0
Q ss_pred hcCCceeEEEeecCCCccccccchhhhhcccccccccceecC-CC-CCCCchhhcCCCCCceEeecCCCCCCcccccccc
Q 037953 121 DQLTCLRALRIEGTDNWELEEDQTNEILNGVEKLIHLRYLKL-NL-VGDLPEKCCELLNLQTLELENSSHFKRFPQGIGK 198 (625)
Q Consensus 121 ~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp~~~~~L~~L~~L~L-~~-l~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~l~~ 198 (625)
..+..++.+++. .|.+..+-..+..+++|+.|++ .+ +..+...+..+++|++|++++|. |+.+ ..+..
T Consensus 69 ~~l~~l~~l~l~--------~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~-I~~i-~~l~~ 138 (414)
T KOG0531|consen 69 ESLTSLKELNLR--------QNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNK-ITKL-EGLST 138 (414)
T ss_pred HHhHhHHhhccc--------hhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheeccccc-cccc-cchhh
Confidence 456677777788 8888876666889999999999 55 88886558999999999999998 8888 46888
Q ss_pred ccccceEEecCcccccccccCCCccccccCCceEecCCC
Q 037953 199 LINLRHLIFTEDLLEYMPKGIEKLTSLRTLSEFVVASGG 237 (625)
Q Consensus 199 L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~~~~~~~~~ 237 (625)
++.|+.|++.+|.+..++ ++..+.+|+.+++..+....
T Consensus 139 l~~L~~L~l~~N~i~~~~-~~~~l~~L~~l~l~~n~i~~ 176 (414)
T KOG0531|consen 139 LTLLKELNLSGNLISDIS-GLESLKSLKLLDLSYNRIVD 176 (414)
T ss_pred ccchhhheeccCcchhcc-CCccchhhhcccCCcchhhh
Confidence 999999999999998874 56668888888876655443
|
|
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=97.99 E-value=5.1e-06 Score=61.87 Aligned_cols=54 Identities=31% Similarity=0.435 Sum_probs=25.5
Q ss_pred cceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhhh-cccccccccceecC
Q 037953 96 KLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEIL-NGVEKLIHLRYLKL 162 (625)
Q Consensus 96 ~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp-~~~~~L~~L~~L~L 162 (625)
+|++|++++|. +....+ ++|.++++|++|+++ +|.+..+| ..|..+++|++|++
T Consensus 2 ~L~~L~l~~n~--l~~i~~---~~f~~l~~L~~L~l~--------~N~l~~i~~~~f~~l~~L~~L~l 56 (61)
T PF13855_consen 2 NLESLDLSNNK--LTEIPP---DSFSNLPNLETLDLS--------NNNLTSIPPDAFSNLPNLRYLDL 56 (61)
T ss_dssp TESEEEETSST--ESEECT---TTTTTGTTESEEEET--------SSSESEEETTTTTTSTTESEEEE
T ss_pred cCcEEECCCCC--CCccCH---HHHcCCCCCCEeEcc--------CCccCccCHHHHcCCCCCCEEeC
Confidence 44555555532 223333 445555555555555 45544443 23455555555554
|
... |
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.92 E-value=7.3e-07 Score=84.96 Aligned_cols=180 Identities=21% Similarity=0.191 Sum_probs=106.1
Q ss_pred CCceEeecCCCCCC--ccccccccccccceEEecCccccc-ccccCCCccccccCCceEecCCCCcCCCcccChh-cccc
Q 037953 177 NLQTLELENSSHFK--RFPQGIGKLINLRHLIFTEDLLEY-MPKGIEKLTSLRTLSEFVVASGGGRYGSEACKLE-GLRH 252 (625)
Q Consensus 177 ~L~~L~L~~~~~l~--~lp~~l~~L~~L~~L~l~~~~l~~-lp~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~l~-~l~~ 252 (625)
.||+|||+... ++ .+-.-+..+.+|+.|.+.++.+.. +-..+.+-.+|+.|++..+++.+ ...+. -+.+
T Consensus 186 Rlq~lDLS~s~-it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t------~n~~~ll~~s 258 (419)
T KOG2120|consen 186 RLQHLDLSNSV-ITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFT------ENALQLLLSS 258 (419)
T ss_pred hhHHhhcchhh-eeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccc------hhHHHHHHHh
Confidence 37777777765 44 232335666777777775555432 22345566677777766655544 22222 2455
Q ss_pred ccccccceEEeccCCCCChhHHHHhccCCCCCCCeEEEEEecccccccCCcccccccchhhHHHHhhcCCCCCCCcEEEE
Q 037953 253 LNHLRGSLKVRGLGNVADVDEVKNAHLEKKKNLVRLILRFKDIDKAVKRWPEAISNENAAKHEAICEALWPPPNLESLEI 332 (625)
Q Consensus 253 L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L 332 (625)
++.|. .|.++||.............++ ++|+.|+++++. +.. ....+..-...+++|..|+|
T Consensus 259 cs~L~-~LNlsWc~l~~~~Vtv~V~his--e~l~~LNlsG~r---------rnl------~~sh~~tL~~rcp~l~~LDL 320 (419)
T KOG2120|consen 259 CSRLD-ELNLSWCFLFTEKVTVAVAHIS--ETLTQLNLSGYR---------RNL------QKSHLSTLVRRCPNLVHLDL 320 (419)
T ss_pred hhhHh-hcCchHhhccchhhhHHHhhhc--hhhhhhhhhhhH---------hhh------hhhHHHHHHHhCCceeeecc
Confidence 55665 6777777554443222222222 467888887652 000 11122222356889999999
Q ss_pred eccCCCcccCCchh---hcccccccEEEEeCCCCCCC--CCCCCCCCCcceeeccccc
Q 037953 333 AGFRGRKMMLSTNW---MASLNMLKKLRLLNCPTCEI--MPPLGQLPSLEILLIKDMT 385 (625)
Q Consensus 333 ~~~~~~~~~~~p~~---l~~l~~L~~L~L~~c~~l~~--l~~l~~l~~L~~L~L~~~~ 385 (625)
+.+.... +.. +..++.|++|.++.|..+.. +-.+...|+|.+|++.+|-
T Consensus 321 SD~v~l~----~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 321 SDSVMLK----NDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred ccccccC----chHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEecccc
Confidence 8877655 433 33788999999998875532 2247788999999988764
|
|
| >KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.91 E-value=1.6e-06 Score=73.24 Aligned_cols=111 Identities=19% Similarity=0.146 Sum_probs=74.0
Q ss_pred cceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhhhccccc-ccccceecC-CC-CCCCchhh
Q 037953 96 KLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEILNGVEK-LIHLRYLKL-NL-VGDLPEKC 172 (625)
Q Consensus 96 ~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp~~~~~-L~~L~~L~L-~~-l~~lP~~i 172 (625)
.+..++|++|..-.....+ ..+.+..+|...+|+ +|.+..+|..|.. .+.++.|+| ++ +.++|.++
T Consensus 28 E~h~ldLssc~lm~i~dav---y~l~~~~el~~i~ls--------~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~ 96 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAV---YMLSKGYELTKISLS--------DNGFKKFPKKFTIKFPTATTLNLANNEISDVPEEL 96 (177)
T ss_pred HhhhcccccchhhHHHHHH---HHHhCCceEEEEecc--------cchhhhCCHHHhhccchhhhhhcchhhhhhchHHH
Confidence 3445566666411111111 334555667777777 7777777766654 347777777 55 77788778
Q ss_pred cCCCCCceEeecCCCCCCccccccccccccceEEecCccccccccc
Q 037953 173 CELLNLQTLELENSSHFKRFPQGIGKLINLRHLIFTEDLLEYMPKG 218 (625)
Q Consensus 173 ~~L~~L~~L~L~~~~~l~~lp~~l~~L~~L~~L~l~~~~l~~lp~~ 218 (625)
..++.|+.|+++.|. +...|+.+..|.+|-.|+...|....+|..
T Consensus 97 Aam~aLr~lNl~~N~-l~~~p~vi~~L~~l~~Lds~~na~~eid~d 141 (177)
T KOG4579|consen 97 AAMPALRSLNLRFNP-LNAEPRVIAPLIKLDMLDSPENARAEIDVD 141 (177)
T ss_pred hhhHHhhhcccccCc-cccchHHHHHHHhHHHhcCCCCccccCcHH
Confidence 888888888888887 777777777787888887777766666654
|
|
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
Probab=97.89 E-value=1.4e-05 Score=54.65 Aligned_cols=40 Identities=25% Similarity=0.454 Sum_probs=27.1
Q ss_pred CCCceEeecCCCCCCccccccccccccceEEecCccccccc
Q 037953 176 LNLQTLELENSSHFKRFPQGIGKLINLRHLIFTEDLLEYMP 216 (625)
Q Consensus 176 ~~L~~L~L~~~~~l~~lp~~l~~L~~L~~L~l~~~~l~~lp 216 (625)
++|++|++++|. ++++|+.+++|++|++|++++|.++.+|
T Consensus 1 ~~L~~L~l~~N~-i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQ-ITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp TT-SEEEETSSS--SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred CcceEEEccCCC-CcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 357777777777 7777766777777777777777666554
|
... |
| >KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.80 E-value=9.1e-07 Score=93.75 Aligned_cols=113 Identities=25% Similarity=0.272 Sum_probs=76.7
Q ss_pred ccchhhhhcccccccccceecC--CCCCCCchhhcCCCCCceEeecCCCCCCccccc-cccccccceEEecCcccccccc
Q 037953 141 EDQTNEILNGVEKLIHLRYLKL--NLVGDLPEKCCELLNLQTLELENSSHFKRFPQG-IGKLINLRHLIFTEDLLEYMPK 217 (625)
Q Consensus 141 ~~~l~~lp~~~~~L~~L~~L~L--~~l~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~-l~~L~~L~~L~l~~~~l~~lp~ 217 (625)
+|.+..+-.++.-++.|+.||| |.+... +.+..|++|++|||++|. ++.+|.- ...+ +|+.|.+.+|.++++ .
T Consensus 173 yN~L~~mD~SLqll~ale~LnLshNk~~~v-~~Lr~l~~LkhLDlsyN~-L~~vp~l~~~gc-~L~~L~lrnN~l~tL-~ 248 (1096)
T KOG1859|consen 173 YNRLVLMDESLQLLPALESLNLSHNKFTKV-DNLRRLPKLKHLDLSYNC-LRHVPQLSMVGC-KLQLLNLRNNALTTL-R 248 (1096)
T ss_pred hhhHHhHHHHHHHHHHhhhhccchhhhhhh-HHHHhcccccccccccch-hccccccchhhh-hheeeeecccHHHhh-h
Confidence 6777777677777888888888 336666 377788888888888887 7777753 2233 388888888887777 5
Q ss_pred cCCCccccccCCceEecCCCCcCCCcccChhccccccccccceEEec
Q 037953 218 GIEKLTSLRTLSEFVVASGGGRYGSEACKLEGLRHLNHLRGSLKVRG 264 (625)
Q Consensus 218 ~i~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~L~l~~ 264 (625)
++.+|.+|+.|++..+-... -..+..|..|..|+ .|.+.+
T Consensus 249 gie~LksL~~LDlsyNll~~------hseL~pLwsLs~L~-~L~LeG 288 (1096)
T KOG1859|consen 249 GIENLKSLYGLDLSYNLLSE------HSELEPLWSLSSLI-VLWLEG 288 (1096)
T ss_pred hHHhhhhhhccchhHhhhhc------chhhhHHHHHHHHH-HHhhcC
Confidence 78888888888876654443 33444455555555 554443
|
|
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.77 E-value=2.4e-05 Score=86.97 Aligned_cols=129 Identities=19% Similarity=0.161 Sum_probs=92.1
Q ss_pred CCceEEEEEEcCCC--Ccchhhhc-cCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhh
Q 037953 71 PEKLRHLMLVLGYE--APSLVSIF-NAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEI 147 (625)
Q Consensus 71 ~~~lr~L~l~~~~~--~~~~~~~~-~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~l 147 (625)
..++++|++.+... ..-|..++ -+|.||+|.+.+-.- ..+..- ....++++|+.||+| ++.+..+
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~-~~~dF~---~lc~sFpNL~sLDIS--------~TnI~nl 188 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQF-DNDDFS---QLCASFPNLRSLDIS--------GTNISNL 188 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCcee-cchhHH---HHhhccCccceeecC--------CCCccCc
Confidence 46789999988654 23333333 489999999999431 122222 567899999999999 8888877
Q ss_pred hcccccccccceecC-CC-CCCCc--hhhcCCCCCceEeecCCCCCCcccc-------ccccccccceEEecCcccc
Q 037953 148 LNGVEKLIHLRYLKL-NL-VGDLP--EKCCELLNLQTLELENSSHFKRFPQ-------GIGKLINLRHLIFTEDLLE 213 (625)
Q Consensus 148 p~~~~~L~~L~~L~L-~~-l~~lP--~~i~~L~~L~~L~L~~~~~l~~lp~-------~l~~L~~L~~L~l~~~~l~ 213 (625)
..+++|++|+.|.+ |- +..-. ..+.+|++|++||+|..... .-+. .-..|++|+.||.+.+.+.
T Consensus 189 -~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~-~~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 189 -SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNN-DDTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred -HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccc-cchHHHHHHHHhcccCccccEEecCCcchh
Confidence 57999999999999 44 44432 46889999999999987633 2221 1234889999999766543
|
|
| >KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.73 E-value=1.5e-06 Score=92.08 Aligned_cols=127 Identities=18% Similarity=0.059 Sum_probs=102.5
Q ss_pred CCCceEEEEEEcCCCCcchhhhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhhhc
Q 037953 70 CPEKLRHLMLVLGYEAPSLVSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEILN 149 (625)
Q Consensus 70 ~~~~lr~L~l~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp~ 149 (625)
.|.++...+.+.|.+..+..++.-++.|+.|+|++|+ +... +.+..|++|+.|||+ +|.+..+|.
T Consensus 162 ~Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk--~~~v-----~~Lr~l~~LkhLDls--------yN~L~~vp~ 226 (1096)
T KOG1859|consen 162 VWNKLATASFSYNRLVLMDESLQLLPALESLNLSHNK--FTKV-----DNLRRLPKLKHLDLS--------YNCLRHVPQ 226 (1096)
T ss_pred hhhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhh--hhhh-----HHHHhcccccccccc--------cchhccccc
Confidence 4678899999999998888898889999999999976 4443 678999999999999 999999885
Q ss_pred ccccccccceecC-CC-CCCCchhhcCCCCCceEeecCCCCCCccc--cccccccccceEEecCcccc
Q 037953 150 GVEKLIHLRYLKL-NL-VGDLPEKCCELLNLQTLELENSSHFKRFP--QGIGKLINLRHLIFTEDLLE 213 (625)
Q Consensus 150 ~~~~L~~L~~L~L-~~-l~~lP~~i~~L~~L~~L~L~~~~~l~~lp--~~l~~L~~L~~L~l~~~~l~ 213 (625)
-=..-.+|+.|.+ |+ ++++ ..+.+|++|+.||+++|- +.... .-++.|..|+.|.|.+|.+.
T Consensus 227 l~~~gc~L~~L~lrnN~l~tL-~gie~LksL~~LDlsyNl-l~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 227 LSMVGCKLQLLNLRNNALTTL-RGIENLKSLYGLDLSYNL-LSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred cchhhhhheeeeecccHHHhh-hhHHhhhhhhccchhHhh-hhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 3222234999999 77 8888 689999999999999996 54332 22677888999999766654
|
|
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
Probab=97.62 E-value=5.2e-05 Score=51.85 Aligned_cols=37 Identities=38% Similarity=0.548 Sum_probs=22.6
Q ss_pred ccceecC-CC-CCCCchhhcCCCCCceEeecCCCCCCccc
Q 037953 156 HLRYLKL-NL-VGDLPEKCCELLNLQTLELENSSHFKRFP 193 (625)
Q Consensus 156 ~L~~L~L-~~-l~~lP~~i~~L~~L~~L~L~~~~~l~~lp 193 (625)
+|++|++ ++ +..+|..+++|++|++|++++|+ ++++|
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~-i~~i~ 40 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNP-ISDIS 40 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSC-CSBEG
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCC-CCCCc
Confidence 4555555 22 55555567777777777777776 66654
|
... |
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00015 Score=74.40 Aligned_cols=78 Identities=13% Similarity=0.112 Sum_probs=48.0
Q ss_pred CceEEEEEEcCCCCcchhhhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCcccccc-chhhhhcc
Q 037953 72 EKLRHLMLVLGYEAPSLVSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEED-QTNEILNG 150 (625)
Q Consensus 72 ~~lr~L~l~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~-~l~~lp~~ 150 (625)
.++++|+++++.+..+| .+ -++|++|.+++|.. ...+| +.+. ++|++|+++ +| .+..+|..
T Consensus 52 ~~l~~L~Is~c~L~sLP-~L--P~sLtsL~Lsnc~n--LtsLP---~~LP--~nLe~L~Ls--------~Cs~L~sLP~s 113 (426)
T PRK15386 52 RASGRLYIKDCDIESLP-VL--PNELTEITIENCNN--LTTLP---GSIP--EGLEKLTVC--------HCPEISGLPES 113 (426)
T ss_pred cCCCEEEeCCCCCcccC-CC--CCCCcEEEccCCCC--cccCC---chhh--hhhhheEcc--------Ccccccccccc
Confidence 45778888887777776 22 23588888887642 24455 4442 578888888 55 36666653
Q ss_pred cccccccceecC----CC-CCCCchhhc
Q 037953 151 VEKLIHLRYLKL----NL-VGDLPEKCC 173 (625)
Q Consensus 151 ~~~L~~L~~L~L----~~-l~~lP~~i~ 173 (625)
|+.|++ +. +..+|.++.
T Consensus 114 ------Le~L~L~~n~~~~L~~LPssLk 135 (426)
T PRK15386 114 ------VRSLEIKGSATDSIKNVPNGLT 135 (426)
T ss_pred ------cceEEeCCCCCcccccCcchHh
Confidence 444445 22 666776543
|
|
| >KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.52 E-value=2.4e-05 Score=66.31 Aligned_cols=88 Identities=13% Similarity=0.147 Sum_probs=46.7
Q ss_pred CCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhhhcccccccccceecC-CC-CCCCchh
Q 037953 94 AIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEILNGVEKLIHLRYLKL-NL-VGDLPEK 171 (625)
Q Consensus 94 l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp~~~~~L~~L~~L~L-~~-l~~lP~~ 171 (625)
...|...+|++|. +...++ .+-..++.++.|+|+ +|.+.++|..+..++.||.|++ .+ +...|..
T Consensus 52 ~~el~~i~ls~N~--fk~fp~---kft~kf~t~t~lNl~--------~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~v 118 (177)
T KOG4579|consen 52 GYELTKISLSDNG--FKKFPK---KFTIKFPTATTLNLA--------NNEISDVPEELAAMPALRSLNLRFNPLNAEPRV 118 (177)
T ss_pred CceEEEEecccch--hhhCCH---HHhhccchhhhhhcc--------hhhhhhchHHHhhhHHhhhcccccCccccchHH
Confidence 3444444555543 222222 333344455566666 5556666655666666666666 33 5555666
Q ss_pred hcCCCCCceEeecCCCCCCccccc
Q 037953 172 CCELLNLQTLELENSSHFKRFPQG 195 (625)
Q Consensus 172 i~~L~~L~~L~L~~~~~l~~lp~~ 195 (625)
+..|.+|-+||..+|. ...+|-.
T Consensus 119 i~~L~~l~~Lds~~na-~~eid~d 141 (177)
T KOG4579|consen 119 IAPLIKLDMLDSPENA-RAEIDVD 141 (177)
T ss_pred HHHHHhHHHhcCCCCc-cccCcHH
Confidence 6666666666665555 4455444
|
|
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00011 Score=81.87 Aligned_cols=76 Identities=26% Similarity=0.388 Sum_probs=37.0
Q ss_pred ccccceecC-CC---CCCCchhhcCCCCCceEeecCCCCCCccccccccccccceEEecCccccccc--ccCCCcccccc
Q 037953 154 LIHLRYLKL-NL---VGDLPEKCCELLNLQTLELENSSHFKRFPQGIGKLINLRHLIFTEDLLEYMP--KGIEKLTSLRT 227 (625)
Q Consensus 154 L~~L~~L~L-~~---l~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~l~~L~~L~~L~l~~~~l~~lp--~~i~~L~~L~~ 227 (625)
|++|+.|.+ +. ..++-.-..++++|..||+|+++ ++.+ .++++|++|+.|.+.+-.+..-. ..+.+|++|+.
T Consensus 147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~Tn-I~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~v 224 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTN-ISNL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRV 224 (699)
T ss_pred CcccceEEecCceecchhHHHHhhccCccceeecCCCC-ccCc-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCe
Confidence 556666666 22 22233334455666666666665 5555 45566666666555433332211 12344444444
Q ss_pred CCce
Q 037953 228 LSEF 231 (625)
Q Consensus 228 L~~~ 231 (625)
|+++
T Consensus 225 LDIS 228 (699)
T KOG3665|consen 225 LDIS 228 (699)
T ss_pred eecc
Confidence 4443
|
|
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.00019 Score=68.88 Aligned_cols=57 Identities=25% Similarity=0.369 Sum_probs=29.4
Q ss_pred cccccccceecC-CC-----CCCCchhhcCCCCCceEeecCCCCCC--ccccccccccccceEEecCcc
Q 037953 151 VEKLIHLRYLKL-NL-----VGDLPEKCCELLNLQTLELENSSHFK--RFPQGIGKLINLRHLIFTEDL 211 (625)
Q Consensus 151 ~~~L~~L~~L~L-~~-----l~~lP~~i~~L~~L~~L~L~~~~~l~--~lp~~l~~L~~L~~L~l~~~~ 211 (625)
+.++++|++|+| |+ |+.+| ..+.+|++|-|.++. +. .....+..++.++.|+++.|.
T Consensus 93 le~lP~l~~LNls~N~L~s~I~~lp---~p~~nl~~lVLNgT~-L~w~~~~s~l~~lP~vtelHmS~N~ 157 (418)
T KOG2982|consen 93 LEQLPALTTLNLSCNSLSSDIKSLP---LPLKNLRVLVLNGTG-LSWTQSTSSLDDLPKVTELHMSDNS 157 (418)
T ss_pred HhcCccceEeeccCCcCCCccccCc---ccccceEEEEEcCCC-CChhhhhhhhhcchhhhhhhhccch
Confidence 345555555555 32 33333 345566666666665 32 222334556666666665543
|
|
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.00023 Score=68.33 Aligned_cols=66 Identities=17% Similarity=0.091 Sum_probs=39.5
Q ss_pred CCCCCcEEEEeccCCCcccCCchhhcccccccEEEEeCCCCCCCC---CCCCCCCCcceeeccccccceee
Q 037953 323 PPPNLESLEIAGFRGRKMMLSTNWMASLNMLKKLRLLNCPTCEIM---PPLGQLPSLEILLIKDMTSVERV 390 (625)
Q Consensus 323 ~~~~L~~L~L~~~~~~~~~~~p~~l~~l~~L~~L~L~~c~~l~~l---~~l~~l~~L~~L~L~~~~~l~~l 390 (625)
-++++..+.+..|...+.. .-.....++.+--|.|+. .++.++ ..+.++++|..|.+++++-...+
T Consensus 197 ~Fpnv~sv~v~e~PlK~~s-~ek~se~~p~~~~LnL~~-~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l 265 (418)
T KOG2982|consen 197 IFPNVNSVFVCEGPLKTES-SEKGSEPFPSLSCLNLGA-NNIDSWASVDALNGFPQLVDLRVSENPLSDPL 265 (418)
T ss_pred hcccchheeeecCcccchh-hcccCCCCCcchhhhhcc-cccccHHHHHHHcCCchhheeeccCCcccccc
Confidence 3567777777666543320 012233556666677766 334443 35778899999999888755444
|
|
| >COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.00093 Score=63.45 Aligned_cols=46 Identities=22% Similarity=0.317 Sum_probs=33.5
Q ss_pred hhhcCCCCCceEeecCCCCCCccccc----cccccccceEEecCcccccc
Q 037953 170 EKCCELLNLQTLELENSSHFKRFPQG----IGKLINLRHLIFTEDLLEYM 215 (625)
Q Consensus 170 ~~i~~L~~L~~L~L~~~~~l~~lp~~----l~~L~~L~~L~l~~~~l~~l 215 (625)
+.+-++++|+..+||.|..-.+.|+. |++-+.|+||.+.+|.++.+
T Consensus 86 ~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~ 135 (388)
T COG5238 86 KALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPI 135 (388)
T ss_pred HHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCcc
Confidence 45668889999999998733345544 56678888888888876654
|
|
| >KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.0017 Score=59.14 Aligned_cols=60 Identities=22% Similarity=0.301 Sum_probs=25.6
Q ss_pred HhcCCceeEEEeecCCCccccccchhhhhccccc-ccccceecC-CC-CCCCc--hhhcCCCCCceEeecCCC
Q 037953 120 FDQLTCLRALRIEGTDNWELEEDQTNEILNGVEK-LIHLRYLKL-NL-VGDLP--EKCCELLNLQTLELENSS 187 (625)
Q Consensus 120 ~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp~~~~~-L~~L~~L~L-~~-l~~lP--~~i~~L~~L~~L~L~~~~ 187 (625)
|..++.|.+|.|+ +|.+..|.+.+.. +++|..|.| ++ +..+- ..+..+++|++|.+-+|.
T Consensus 60 lp~l~rL~tLll~--------nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Np 124 (233)
T KOG1644|consen 60 LPHLPRLHTLLLN--------NNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNP 124 (233)
T ss_pred CCCccccceEEec--------CCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCc
Confidence 3445555555555 5555444333322 234444444 22 22221 123344444444444444
|
|
| >KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.00039 Score=75.50 Aligned_cols=33 Identities=24% Similarity=0.127 Sum_probs=18.5
Q ss_pred CCCCceEeecCCCCCCc--cccccccccccceEEe
Q 037953 175 LLNLQTLELENSSHFKR--FPQGIGKLINLRHLIF 207 (625)
Q Consensus 175 L~~L~~L~L~~~~~l~~--lp~~l~~L~~L~~L~l 207 (625)
.+.|+.|.+.+|..+.. +-+....+++|+.|++
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l 221 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDL 221 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecc
Confidence 55666666666654544 2233455566666666
|
|
| >KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.0049 Score=56.21 Aligned_cols=100 Identities=25% Similarity=0.259 Sum_probs=54.9
Q ss_pred CceeEEEeecCCCccccccchhhhhcccccccccceecC-CC-CCCCchhhcC-CCCCceEeecCCCCCCcccc--cccc
Q 037953 124 TCLRALRIEGTDNWELEEDQTNEILNGVEKLIHLRYLKL-NL-VGDLPEKCCE-LLNLQTLELENSSHFKRFPQ--GIGK 198 (625)
Q Consensus 124 ~~Lr~L~Ls~c~~~~~~~~~l~~lp~~~~~L~~L~~L~L-~~-l~~lP~~i~~-L~~L~~L~L~~~~~l~~lp~--~l~~ 198 (625)
.....+||+ +|.+..++ .|..++.|.+|.| ++ +..+-..+.. +++|..|.|.+|+ +.++-+ .+..
T Consensus 42 d~~d~iDLt--------dNdl~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNs-i~~l~dl~pLa~ 111 (233)
T KOG1644|consen 42 DQFDAIDLT--------DNDLRKLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNS-IQELGDLDPLAS 111 (233)
T ss_pred cccceeccc--------ccchhhcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCcc-hhhhhhcchhcc
Confidence 345556666 66665554 3556666666666 33 6665444443 3446666666665 554422 2455
Q ss_pred ccccceEEecCcccccccc----cCCCccccccCCceEe
Q 037953 199 LINLRHLIFTEDLLEYMPK----GIEKLTSLRTLSEFVV 233 (625)
Q Consensus 199 L~~L~~L~l~~~~l~~lp~----~i~~L~~L~~L~~~~~ 233 (625)
+++|++|.+-.|..+.-+. -+.++++|+.|+...+
T Consensus 112 ~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 112 CPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred CCccceeeecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 6666666664444443321 2455666666665444
|
|
| >COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.0069 Score=57.72 Aligned_cols=116 Identities=20% Similarity=0.216 Sum_probs=60.2
Q ss_pred hccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccch----hhhh-------cccccccccce
Q 037953 91 IFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQT----NEIL-------NGVEKLIHLRY 159 (625)
Q Consensus 91 ~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l----~~lp-------~~~~~L~~L~~ 159 (625)
+..+..+..++||+|... ......+...+.+-++|++.+++ .-.. .++| ..+-++++|+.
T Consensus 26 l~~~d~~~evdLSGNtig-tEA~e~l~~~ia~~~~L~vvnfs--------d~ftgr~kde~~~~L~~Ll~aLlkcp~l~~ 96 (388)
T COG5238 26 LEMMDELVEVDLSGNTIG-TEAMEELCNVIANVRNLRVVNFS--------DAFTGRDKDELYSNLVMLLKALLKCPRLQK 96 (388)
T ss_pred HHhhcceeEEeccCCccc-HHHHHHHHHHHhhhcceeEeehh--------hhhhcccHHHHHHHHHHHHHHHhcCCccee
Confidence 334555666666665311 11111111445555666666666 2221 1222 24455667777
Q ss_pred ecC--CC-CCCCc----hhhcCCCCCceEeecCCCCCCccccc-cc-------------cccccceEEecCccccccc
Q 037953 160 LKL--NL-VGDLP----EKCCELLNLQTLELENSSHFKRFPQG-IG-------------KLINLRHLIFTEDLLEYMP 216 (625)
Q Consensus 160 L~L--~~-l~~lP----~~i~~L~~L~~L~L~~~~~l~~lp~~-l~-------------~L~~L~~L~l~~~~l~~lp 216 (625)
.+| |- -...| +-|+.-+.|.+|.+++|. ++-+..+ |+ .-+.|+....+.|.+..-|
T Consensus 97 v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnG-lGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs 173 (388)
T COG5238 97 VDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNG-LGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGS 173 (388)
T ss_pred eeccccccCcccchHHHHHHhcCCCceeEEeecCC-CCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCc
Confidence 777 33 23333 346677889999999887 6654322 22 2345666666555555443
|
|
| >KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.0027 Score=60.32 Aligned_cols=83 Identities=27% Similarity=0.269 Sum_probs=40.8
Q ss_pred cccccccceecC--C--C-CCCCchhhcCCCCCceEeecCCCCCCccc--cccccccccceEEecCcccccccc----cC
Q 037953 151 VEKLIHLRYLKL--N--L-VGDLPEKCCELLNLQTLELENSSHFKRFP--QGIGKLINLRHLIFTEDLLEYMPK----GI 219 (625)
Q Consensus 151 ~~~L~~L~~L~L--~--~-l~~lP~~i~~L~~L~~L~L~~~~~l~~lp--~~l~~L~~L~~L~l~~~~l~~lp~----~i 219 (625)
+-.|++|++|.+ | . ...++-...++++|++|++++|+ ++.+- +.+.++.+|..|+++++..+.+-. .+
T Consensus 61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nk-i~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf 139 (260)
T KOG2739|consen 61 FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNK-IKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVF 139 (260)
T ss_pred CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCc-cccccccchhhhhcchhhhhcccCCccccccHHHHHH
Confidence 334556666666 3 1 33444444555667777777666 44321 124455566666664444333211 12
Q ss_pred CCccccccCCceEec
Q 037953 220 EKLTSLRTLSEFVVA 234 (625)
Q Consensus 220 ~~L~~L~~L~~~~~~ 234 (625)
.-+++|..|+...+.
T Consensus 140 ~ll~~L~~LD~~dv~ 154 (260)
T KOG2739|consen 140 LLLPSLKYLDGCDVD 154 (260)
T ss_pred HHhhhhccccccccC
Confidence 234555555554443
|
|
| >KOG2123 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.0017 Score=61.98 Aligned_cols=32 Identities=13% Similarity=-0.194 Sum_probs=13.6
Q ss_pred ceEEEEEEcCCCCcchhhhccCCcceEEEeecc
Q 037953 73 KLRHLMLVLGYEAPSLVSIFNAIKLRSLILFYW 105 (625)
Q Consensus 73 ~lr~L~l~~~~~~~~~~~~~~l~~Lr~L~L~~~ 105 (625)
+++.|+.+++++..+.- ..+++.|++|.|+-|
T Consensus 20 ~vkKLNcwg~~L~DIsi-c~kMp~lEVLsLSvN 51 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDISI-CEKMPLLEVLSLSVN 51 (388)
T ss_pred HhhhhcccCCCccHHHH-HHhcccceeEEeecc
Confidence 44444444444433221 133444444444443
|
|
| >PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.0047 Score=35.08 Aligned_cols=21 Identities=24% Similarity=0.540 Sum_probs=13.8
Q ss_pred CCceEeecCCCCCCcccccccc
Q 037953 177 NLQTLELENSSHFKRFPQGIGK 198 (625)
Q Consensus 177 ~L~~L~L~~~~~l~~lp~~l~~ 198 (625)
+|++||+++|. ++.+|.+|++
T Consensus 1 ~L~~Ldls~n~-l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNN-LTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSE-ESEEGTTTTT
T ss_pred CccEEECCCCc-CEeCChhhcC
Confidence 46777777775 6677766554
|
LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A .... |
| >KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.00092 Score=72.56 Aligned_cols=140 Identities=21% Similarity=0.266 Sum_probs=85.8
Q ss_pred CCCCCCcEEEEeccCCCcccCCchhhcccccccEEEEeCC-CCCCCCC-----CCCCCCCcceeeccccccceeeCccCC
Q 037953 322 WPPPNLESLEIAGFRGRKMMLSTNWMASLNMLKKLRLLNC-PTCEIMP-----PLGQLPSLEILLIKDMTSVERVGDESL 395 (625)
Q Consensus 322 ~~~~~L~~L~L~~~~~~~~~~~p~~l~~l~~L~~L~L~~c-~~l~~l~-----~l~~l~~L~~L~L~~~~~l~~l~~~~~ 395 (625)
..++.|+.|.+.++........-.....+++|+.|++++| ......+ ....+++|+.|+++.|..++...-...
T Consensus 185 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l 264 (482)
T KOG1947|consen 185 SSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSAL 264 (482)
T ss_pred hhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHH
Confidence 3478899999988866552000234457899999999873 3333222 234568899999988876443321111
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCeeeccCcccccccccCCCCcccCCCccEEEEecCCCCCc--CCcCCCCCCCCCEEE
Q 037953 396 GIANGDHGAPSSSSVNNIAFPKLKELEFSGLQEWEDWDFRKEDITIMPQINSLSIYGCHKLKS--LPDQLLQSSTLKTLR 473 (625)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~--lp~~~~~l~~L~~L~ 473 (625)
...+++|+.|.+..|..++.-.+... ...+++|++|++++|..++. +.....++++|+.|.
T Consensus 265 ----------------~~~c~~L~~L~l~~c~~lt~~gl~~i-~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~ 327 (482)
T KOG1947|consen 265 ----------------ASRCPNLETLSLSNCSNLTDEGLVSI-AERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELK 327 (482)
T ss_pred ----------------HhhCCCcceEccCCCCccchhHHHHH-HHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhh
Confidence 33488999999888876433322111 23688899999999988744 333334456555555
Q ss_pred EecCc
Q 037953 474 INRCR 478 (625)
Q Consensus 474 l~~c~ 478 (625)
+..++
T Consensus 328 ~~~~~ 332 (482)
T KOG1947|consen 328 LLSLN 332 (482)
T ss_pred hhhcC
Confidence 44443
|
|
| >KOG2123 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.002 Score=61.53 Aligned_cols=99 Identities=22% Similarity=0.263 Sum_probs=76.3
Q ss_pred cCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhhhcccccccccceecC--CCCCCCch
Q 037953 93 NAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEILNGVEKLIHLRYLKL--NLVGDLPE 170 (625)
Q Consensus 93 ~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp~~~~~L~~L~~L~L--~~l~~lP~ 170 (625)
.+.+.+.|++-+|. +.++ ....+|+.|++|.|| =|.+..+. .+..+++|+.|+| |.|.++-+
T Consensus 17 dl~~vkKLNcwg~~--L~DI-----sic~kMp~lEVLsLS--------vNkIssL~-pl~rCtrLkElYLRkN~I~sldE 80 (388)
T KOG2123|consen 17 DLENVKKLNCWGCG--LDDI-----SICEKMPLLEVLSLS--------VNKISSLA-PLQRCTRLKELYLRKNCIESLDE 80 (388)
T ss_pred HHHHhhhhcccCCC--ccHH-----HHHHhcccceeEEee--------ccccccch-hHHHHHHHHHHHHHhcccccHHH
Confidence 45678889988886 2332 457899999999999 88888884 5899999999999 55777743
Q ss_pred --hhcCCCCCceEeecCCCCCCccccc-----cccccccceEEe
Q 037953 171 --KCCELLNLQTLELENSSHFKRFPQG-----IGKLINLRHLIF 207 (625)
Q Consensus 171 --~i~~L~~L~~L~L~~~~~l~~lp~~-----l~~L~~L~~L~l 207 (625)
-+.++++|+.|-|..|.--++-+.. +.-|++|+.||=
T Consensus 81 L~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLDn 124 (388)
T KOG2123|consen 81 LEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLDN 124 (388)
T ss_pred HHHHhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhccC
Confidence 3678999999999888744444332 677889998874
|
|
| >KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=95.29 E-value=0.0084 Score=57.07 Aligned_cols=113 Identities=20% Similarity=0.126 Sum_probs=58.0
Q ss_pred CceEEEEEEcCCCCcchhhhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhhhccc
Q 037953 72 EKLRHLMLVLGYEAPSLVSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEILNGV 151 (625)
Q Consensus 72 ~~lr~L~l~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp~~~ 151 (625)
.++.++++.+.....+ ..+..+++|+.|.++.|.......++ -....+++|++|+|+ +|.+..+ +
T Consensus 43 ~~le~ls~~n~gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~---vl~e~~P~l~~l~ls--------~Nki~~l-s-- 107 (260)
T KOG2739|consen 43 VELELLSVINVGLTTL-TNFPKLPKLKKLELSDNYRRVSGGLE---VLAEKAPNLKVLNLS--------GNKIKDL-S-- 107 (260)
T ss_pred cchhhhhhhccceeec-ccCCCcchhhhhcccCCcccccccce---ehhhhCCceeEEeec--------CCccccc-c--
Confidence 3444555444333222 23455666666666665333344444 334455666666666 5554432 1
Q ss_pred ccccccceecCCCCCCCchhhcCCCCCceEeecCCCCCCcccc----ccccccccceEEecCccccccc
Q 037953 152 EKLIHLRYLKLNLVGDLPEKCCELLNLQTLELENSSHFKRFPQ----GIGKLINLRHLIFTEDLLEYMP 216 (625)
Q Consensus 152 ~~L~~L~~L~L~~l~~lP~~i~~L~~L~~L~L~~~~~l~~lp~----~l~~L~~L~~L~l~~~~l~~lp 216 (625)
++ ..+..+.+|..||+.+|. ...+-. .+.-+++|++||-....-.+.|
T Consensus 108 ---------------tl-~pl~~l~nL~~Ldl~n~~-~~~l~dyre~vf~ll~~L~~LD~~dv~~~Ea~ 159 (260)
T KOG2739|consen 108 ---------------TL-RPLKELENLKSLDLFNCS-VTNLDDYREKVFLLLPSLKYLDGCDVDGEEAP 159 (260)
T ss_pred ---------------cc-chhhhhcchhhhhcccCC-ccccccHHHHHHHHhhhhccccccccCCcccc
Confidence 11 234555667777777776 333321 1555677888877333333444
|
|
| >PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] | Back alignment and domain information |
|---|
Probab=94.55 E-value=0.016 Score=32.88 Aligned_cols=22 Identities=18% Similarity=0.255 Sum_probs=16.0
Q ss_pred ceeEEEeecCCCccccccchhhhhcccccc
Q 037953 125 CLRALRIEGTDNWELEEDQTNEILNGVEKL 154 (625)
Q Consensus 125 ~Lr~L~Ls~c~~~~~~~~~l~~lp~~~~~L 154 (625)
+|++|||+ +|.++.+|++|++|
T Consensus 1 ~L~~Ldls--------~n~l~~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLS--------GNNLTSIPSSFSNL 22 (22)
T ss_dssp TESEEEET--------SSEESEEGTTTTT-
T ss_pred CccEEECC--------CCcCEeCChhhcCC
Confidence 47888888 77777888766553
|
LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A .... |
| >PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A | Back alignment and domain information |
|---|
Probab=94.47 E-value=0.051 Score=46.99 Aligned_cols=100 Identities=13% Similarity=0.270 Sum_probs=38.6
Q ss_pred hhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhhhc-ccccccccceecC-CCCCC
Q 037953 90 SIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEILN-GVEKLIHLRYLKL-NLVGD 167 (625)
Q Consensus 90 ~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp~-~~~~L~~L~~L~L-~~l~~ 167 (625)
.|.++++|+.+.+... ....-. ..|..+++|+.+.+. ++ +..++. .|..+.+|+.+.+ +.+..
T Consensus 7 ~F~~~~~l~~i~~~~~---~~~I~~---~~F~~~~~l~~i~~~--------~~-~~~i~~~~F~~~~~l~~i~~~~~~~~ 71 (129)
T PF13306_consen 7 AFYNCSNLESITFPNT---IKKIGE---NAFSNCTSLKSINFP--------NN-LTSIGDNAFSNCKSLESITFPNNLKS 71 (129)
T ss_dssp TTTT-TT--EEEETST-----EE-T---TTTTT-TT-SEEEES--------ST-TSCE-TTTTTT-TT-EEEEETSTT-E
T ss_pred HHhCCCCCCEEEECCC---eeEeCh---hhccccccccccccc--------cc-ccccceeeeecccccccccccccccc
Confidence 3445556666665532 112222 445666666666665 42 344432 2555555555555 33333
Q ss_pred Cchh-hcCCCCCceEeecCCCCCCccccc-cccccccceEEe
Q 037953 168 LPEK-CCELLNLQTLELENSSHFKRFPQG-IGKLINLRHLIF 207 (625)
Q Consensus 168 lP~~-i~~L~~L~~L~L~~~~~l~~lp~~-l~~L~~L~~L~l 207 (625)
++.. +..+++|+.+++..+ +..++.. +.+. +|+.+.+
T Consensus 72 i~~~~F~~~~~l~~i~~~~~--~~~i~~~~f~~~-~l~~i~~ 110 (129)
T PF13306_consen 72 IGDNAFSNCTNLKNIDIPSN--ITEIGSSSFSNC-NLKEINI 110 (129)
T ss_dssp E-TTTTTT-TTECEEEETTT---BEEHTTTTTT--T--EEE-
T ss_pred cccccccccccccccccCcc--ccEEchhhhcCC-CceEEEE
Confidence 3332 334556666665432 3344333 4443 5555554
|
|
| >PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D | Back alignment and domain information |
|---|
Probab=93.72 E-value=0.047 Score=28.71 Aligned_cols=17 Identities=41% Similarity=0.714 Sum_probs=9.2
Q ss_pred CCCceEeecCCCCCCccc
Q 037953 176 LNLQTLELENSSHFKRFP 193 (625)
Q Consensus 176 ~~L~~L~L~~~~~l~~lp 193 (625)
++|+.|++++|+ ++++|
T Consensus 1 ~~L~~L~l~~n~-L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNR-LTSLP 17 (17)
T ss_dssp TT-SEEEETSS---SSE-
T ss_pred CccCEEECCCCC-CCCCc
Confidence 367777777777 76665
|
... |
| >KOG0693 consensus Myo-inositol-1-phosphate synthase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.29 E-value=0.038 Score=54.28 Aligned_cols=45 Identities=49% Similarity=0.810 Sum_probs=39.8
Q ss_pred eeEEEeeccccccCCccccccCCCCCCcccchh----cccchhhhhhcc
Q 037953 578 GFFVTFESILPKVNSDDIAFGGRHTSDMNLAEA----KVLDIDFIAEIY 622 (625)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 622 (625)
.+|+.|-+++|-++..|++|.|--.+||+++|| ||+|+|.-..++
T Consensus 120 eiy~Pfk~llPmv~Pnd~v~~GWDIs~~nL~eAM~RakVld~~LQ~ql~ 168 (512)
T KOG0693|consen 120 EIYAPFKSLLPMVSPNDLVFSGWDISDMNLAEAMARAKVLDIDLQKQLR 168 (512)
T ss_pred EEEeEHHHhCCccCccceEEccccCCCCcHHHHHhhhhccCHHHHHHHH
Confidence 468999999999999999999999999999985 899998755544
|
|
| >KOG3864 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.01 E-value=0.016 Score=53.03 Aligned_cols=68 Identities=18% Similarity=0.404 Sum_probs=47.0
Q ss_pred CCCCCCCCeeeccCcccccccccCCCCcccCCCccEEEEecCCCCCcCC-cCCCCCCCCCEEEEecCcch
Q 037953 412 NIAFPKLKELEFSGLQEWEDWDFRKEDITIMPQINSLSIYGCHKLKSLP-DQLLQSSTLKTLRINRCRVL 480 (625)
Q Consensus 412 ~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp-~~~~~l~~L~~L~l~~c~~L 480 (625)
+..+++++.|.+.+|..+.+|....-. +-.++|+.|+|++|+.+++-- ..+..+++|+.|.|.+.+..
T Consensus 121 L~~l~~i~~l~l~~ck~~dD~~L~~l~-~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~~v 189 (221)
T KOG3864|consen 121 LRDLRSIKSLSLANCKYFDDWCLERLG-GLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLPYV 189 (221)
T ss_pred HhccchhhhheeccccchhhHHHHHhc-ccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCchhh
Confidence 456778888888888888887654321 146888888888888887621 23455777888777776543
|
|
| >KOG0473 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.53 E-value=0.01 Score=55.23 Aligned_cols=84 Identities=14% Similarity=-0.003 Sum_probs=56.2
Q ss_pred hhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhhhcccccccccceecC-CC-CCC
Q 037953 90 SIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEILNGVEKLIHLRYLKL-NL-VGD 167 (625)
Q Consensus 90 ~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp~~~~~L~~L~~L~L-~~-l~~ 167 (625)
.+..+.....||++.|+ ...+. .-|+.++.|..|+++ .|.+..+|..++++..++.+++ ++ ...
T Consensus 37 ei~~~kr~tvld~~s~r---~vn~~---~n~s~~t~~~rl~~s--------knq~~~~~~d~~q~~e~~~~~~~~n~~~~ 102 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNR---LVNLG---KNFSILTRLVRLDLS--------KNQIKFLPKDAKQQRETVNAASHKNNHSQ 102 (326)
T ss_pred hhhccceeeeehhhhhH---HHhhc---cchHHHHHHHHHhcc--------HhhHhhChhhHHHHHHHHHHHhhccchhh
Confidence 34455667777777765 22222 446666777777777 7777777777777777777777 44 777
Q ss_pred CchhhcCCCCCceEeecCCC
Q 037953 168 LPEKCCELLNLQTLELENSS 187 (625)
Q Consensus 168 lP~~i~~L~~L~~L~L~~~~ 187 (625)
.|.+.+.+++++++++.++.
T Consensus 103 ~p~s~~k~~~~k~~e~k~~~ 122 (326)
T KOG0473|consen 103 QPKSQKKEPHPKKNEQKKTE 122 (326)
T ss_pred CCccccccCCcchhhhccCc
Confidence 77777777777777777766
|
|
| >PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A | Back alignment and domain information |
|---|
Probab=91.46 E-value=0.26 Score=42.48 Aligned_cols=113 Identities=11% Similarity=0.182 Sum_probs=58.8
Q ss_pred CceEEEEEEcCCCCcch-hhhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhhhc-
Q 037953 72 EKLRHLMLVLGYEAPSL-VSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEILN- 149 (625)
Q Consensus 72 ~~lr~L~l~~~~~~~~~-~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp~- 149 (625)
.+++.+.+.. ....+. ..|..+++|+.+.+..+ ...... ..|.+++.|+.+.+. + .+..++.
T Consensus 12 ~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~---~~~i~~---~~F~~~~~l~~i~~~--------~-~~~~i~~~ 75 (129)
T PF13306_consen 12 SNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN---LTSIGD---NAFSNCKSLESITFP--------N-NLKSIGDN 75 (129)
T ss_dssp TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST---TSCE-T---TTTTT-TT-EEEEET--------S-TT-EE-TT
T ss_pred CCCCEEEECC-CeeEeChhhccccccccccccccc---ccccce---eeeeccccccccccc--------c-cccccccc
Confidence 4677777753 455554 36788889999999874 223223 668999899999998 5 4444443
Q ss_pred ccccccccceecC-CCCCCCchh-hcCCCCCceEeecCCCCCCccccc-cccccccc
Q 037953 150 GVEKLIHLRYLKL-NLVGDLPEK-CCELLNLQTLELENSSHFKRFPQG-IGKLINLR 203 (625)
Q Consensus 150 ~~~~L~~L~~L~L-~~l~~lP~~-i~~L~~L~~L~L~~~~~l~~lp~~-l~~L~~L~ 203 (625)
.|..+.+|+.+++ .++..++.. +.+. +|+.+.+..+ +..++.. |.++++|+
T Consensus 76 ~F~~~~~l~~i~~~~~~~~i~~~~f~~~-~l~~i~~~~~--~~~i~~~~F~~~~~l~ 129 (129)
T PF13306_consen 76 AFSNCTNLKNIDIPSNITEIGSSSFSNC-NLKEINIPSN--ITKIEENAFKNCTKLK 129 (129)
T ss_dssp TTTT-TTECEEEETTT-BEEHTTTTTT--T--EEE-TTB---SS----GGG------
T ss_pred cccccccccccccCccccEEchhhhcCC-CceEEEECCC--ccEECCccccccccCC
Confidence 4777999999999 556666654 5555 8998888763 5556554 66666653
|
|
| >KOG0473 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.24 E-value=0.016 Score=54.08 Aligned_cols=85 Identities=12% Similarity=0.080 Sum_probs=72.9
Q ss_pred HHHhcCCceeEEEeecCCCccccccchhhhhcccccccccceecC--CCCCCCchhhcCCCCCceEeecCCCCCCccccc
Q 037953 118 GIFDQLTCLRALRIEGTDNWELEEDQTNEILNGVEKLIHLRYLKL--NLVGDLPEKCCELLNLQTLELENSSHFKRFPQG 195 (625)
Q Consensus 118 ~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp~~~~~L~~L~~L~L--~~l~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~ 195 (625)
..+...+..++||++ .|++..+-..|+-++.|..|++ +.+..+|+.++.+..++.+++..|. ....|.+
T Consensus 36 ~ei~~~kr~tvld~~--------s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~-~~~~p~s 106 (326)
T KOG0473|consen 36 REIASFKRVTVLDLS--------SNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNN-HSQQPKS 106 (326)
T ss_pred hhhhccceeeeehhh--------hhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccc-hhhCCcc
Confidence 446778899999999 8888888777888999999999 3399999999999999999988887 8889999
Q ss_pred cccccccceEEecCcc
Q 037953 196 IGKLINLRHLIFTEDL 211 (625)
Q Consensus 196 l~~L~~L~~L~l~~~~ 211 (625)
++++++++++++..+.
T Consensus 107 ~~k~~~~k~~e~k~~~ 122 (326)
T KOG0473|consen 107 QKKEPHPKKNEQKKTE 122 (326)
T ss_pred ccccCCcchhhhccCc
Confidence 9999999999985443
|
|
| >PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D | Back alignment and domain information |
|---|
Probab=88.91 E-value=0.19 Score=26.36 Aligned_cols=8 Identities=38% Similarity=0.592 Sum_probs=4.7
Q ss_pred ceeEEEee
Q 037953 125 CLRALRIE 132 (625)
Q Consensus 125 ~Lr~L~Ls 132 (625)
+|+.|+++
T Consensus 2 ~L~~L~l~ 9 (17)
T PF13504_consen 2 NLRTLDLS 9 (17)
T ss_dssp T-SEEEET
T ss_pred ccCEEECC
Confidence 56666666
|
... |
| >smart00370 LRR Leucine-rich repeats, outliers | Back alignment and domain information |
|---|
Probab=88.46 E-value=0.35 Score=28.50 Aligned_cols=20 Identities=40% Similarity=0.743 Sum_probs=12.6
Q ss_pred CCCCceEeecCCCCCCccccc
Q 037953 175 LLNLQTLELENSSHFKRFPQG 195 (625)
Q Consensus 175 L~~L~~L~L~~~~~l~~lp~~ 195 (625)
|++|++|+|++|. +..+|.+
T Consensus 1 L~~L~~L~L~~N~-l~~lp~~ 20 (26)
T smart00370 1 LPNLRELDLSNNQ-LSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCc-CCcCCHH
Confidence 3556666666666 6666654
|
|
| >smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily | Back alignment and domain information |
|---|
Probab=88.46 E-value=0.35 Score=28.50 Aligned_cols=20 Identities=40% Similarity=0.743 Sum_probs=12.6
Q ss_pred CCCCceEeecCCCCCCccccc
Q 037953 175 LLNLQTLELENSSHFKRFPQG 195 (625)
Q Consensus 175 L~~L~~L~L~~~~~l~~lp~~ 195 (625)
|++|++|+|++|. +..+|.+
T Consensus 1 L~~L~~L~L~~N~-l~~lp~~ 20 (26)
T smart00369 1 LPNLRELDLSNNQ-LSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCc-CCcCCHH
Confidence 3556666666666 6666654
|
|
| >KOG3864 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=87.49 E-value=0.094 Score=48.13 Aligned_cols=61 Identities=16% Similarity=0.263 Sum_probs=42.4
Q ss_pred cCCCccEEEEecCCCCCcCC--cCCCCCCCCCEEEEecCcchhhcccccccccCCCCceEEec
Q 037953 441 IMPQINSLSIYGCHKLKSLP--DQLLQSSTLKTLRINRCRVLEEHFKKDRSKISHIPDIQIYE 501 (625)
Q Consensus 441 ~l~~L~~L~l~~c~~l~~lp--~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~l~~l~~l~~~~ 501 (625)
.+++++.|.+.+|..+...- ...+-.++|+.|+|++|+.+++.-...+.++++++.+.+.+
T Consensus 123 ~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~ 185 (221)
T KOG3864|consen 123 DLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYD 185 (221)
T ss_pred ccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcC
Confidence 67889999999998887631 11123689999999999999886533444555555554443
|
|
| >smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily | Back alignment and domain information |
|---|
Probab=84.57 E-value=0.58 Score=27.53 Aligned_cols=21 Identities=38% Similarity=0.594 Sum_probs=18.4
Q ss_pred ccccceEEecCcccccccccC
Q 037953 199 LINLRHLIFTEDLLEYMPKGI 219 (625)
Q Consensus 199 L~~L~~L~l~~~~l~~lp~~i 219 (625)
|++|++|++++|.++.+|.+.
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 578999999999999998764
|
|
| >smart00370 LRR Leucine-rich repeats, outliers | Back alignment and domain information |
|---|
Probab=84.57 E-value=0.58 Score=27.53 Aligned_cols=21 Identities=38% Similarity=0.594 Sum_probs=18.4
Q ss_pred ccccceEEecCcccccccccC
Q 037953 199 LINLRHLIFTEDLLEYMPKGI 219 (625)
Q Consensus 199 L~~L~~L~l~~~~l~~lp~~i 219 (625)
|++|++|++++|.++.+|.+.
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 578999999999999998764
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 56.9 bits (138), Expect = 6e-09
Identities = 22/111 (19%), Positives = 40/111 (36%), Gaps = 12/111 (10%)
Query: 122 QLTCLRALRIEGTDNWELEEDQTNEILNGVEKLIHLRYLKL---NLVGDLPEKCCELLNL 178
L L++L+I + + + + L L L L + + P L
Sbjct: 204 NLQNLKSLKIRNS--------PLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPL 255
Query: 179 QTLELENSSHFKRFPQGIGKLINLRHLIFTE-DLLEYMPKGIEKLTSLRTL 228
+ L L++ S+ P I +L L L L +P I +L + +
Sbjct: 256 KRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCII 306
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 56.1 bits (136), Expect = 1e-08
Identities = 61/380 (16%), Positives = 108/380 (28%), Gaps = 111/380 (29%)
Query: 116 LKGIFDQLTCLRALRIEGTDNWELEEDQTNEILNGVEKLIHLRYLKLNLVGDLPE--KCC 173
L+ D L+ + + W Q N + + + +
Sbjct: 25 LRPYHDVLSQWQRHYNADRNRWHSAWRQANS------NNPQIETRTGRALKATADLLEDA 78
Query: 174 ELLNLQTLELENSSHFKRFPQGIGKLINLRHLIFTEDLLEYMPKGIEKLTSLRTL----- 228
LEL + +FP +L +L+H+ L +P +++ L TL
Sbjct: 79 TQPGRVALELRSVP-LPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARN 137
Query: 229 ------SEFVVASGGGRYGSEACKLEGLRHLNHLRG--SLKV--RGLGNVADVDEVKNAH 278
+ L LR L+ +R L L + E +
Sbjct: 138 PLRALPASI-------------ASLNRLRELS-IRACPELTELPEPLASTDASGEHQGL- 182
Query: 279 LEKKKNLVRLILRFKDIDKAVKRWPEAISNENAAKHEAICEALWPPPNLESLEIAGFRGR 338
NL L L + I + P +I+ NL++L+ R
Sbjct: 183 ----VNLQSLRLEWTGI----RSLPASIA------------------NLQNLKSLKIRNS 216
Query: 339 KMMLSTNWMASLNMLKKLRLLNCPTCEIMPP-LGQLPSLEILLIKDMTSVERVGDESLGI 397
+ + L L++L L C PP G L+ L++KD +++ +
Sbjct: 217 PLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTL------- 269
Query: 398 ANGDHGAPSSSSVNNIAFPKLKELEFSGLQEWEDWDFRKEDITIMPQINSLSIYGCHKLK 457
P +L +LE L + GC L
Sbjct: 270 -------PLD-------IHRLTQLE------------------------KLDLRGCVNLS 291
Query: 458 SLPDQLLQSSTLKTLRINRC 477
LP + Q + +
Sbjct: 292 RLPSLIAQLPANCIILVPPH 311
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 42.2 bits (100), Expect = 3e-04
Identities = 27/139 (19%), Positives = 45/139 (32%), Gaps = 18/139 (12%)
Query: 90 SIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEILN 149
SI N L+SL + + + L I L L L + G L
Sbjct: 201 SIANLQNLKSLKIRN---SPLSALG--PAI-HHLPKLEELDLRG--CTALRN-----YPP 247
Query: 150 GVEKLIHLRYLKL---NLVGDLPEKCCELLNLQTLELENSSHFKRFPQGIGKLINLRHLI 206
L+ L L + + LP L L+ L+L + R P I +L ++
Sbjct: 248 IFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIIL 307
Query: 207 FTEDLLEYMPKGIEKLTSL 225
L + + + +
Sbjct: 308 VPPHLQAQLDQ--HRPVAR 324
|
| >2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A* Length = 549 | Back alignment and structure |
|---|
Score = 57.3 bits (138), Expect = 9e-09
Identities = 16/83 (19%), Positives = 29/83 (34%), Gaps = 5/83 (6%)
Query: 1 MEMEMIAEGYFDYLATRSLFQEFQRDEEGIVKRCKMHDIVHDFALFLNKKECAAVEVEGV 60
+++ L+ R +R V K+ I+H F + + A + +
Sbjct: 424 EQLDDEVADRLKRLSKRGALLSGKRMP---VLTFKIDHIIHMFLKHVVDAQTIANGISIL 480
Query: 61 EEPLLLI--NTCPEKLRHLMLVL 81
E+ LL I N RH+
Sbjct: 481 EQRLLEIGNNNVSVPERHIPSHF 503
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 57.2 bits (137), Expect = 1e-08
Identities = 94/654 (14%), Positives = 186/654 (28%), Gaps = 193/654 (29%)
Query: 1 MEMEMIAEGYFDYLATRSLFQEFQRDEEGIVKRCKMHDIVHDFALFLNKKECAAVEVEGV 60
M+ E G Y + + F+ V D+ L+K+E + +
Sbjct: 7 MDFET---GEHQY-QYKDILSVFEDA---FVDNFDCKDVQDMPKSILSKEEIDHIIMSKD 59
Query: 61 EEPLLLINTCPEKLRHLMLVLGYEAPSLVSIFNAIKLRSLILFYWIPNLDAMLPVLKGIF 120
L L + +V F LR I + ++
Sbjct: 60 AV---------SGTLRLFWTLLSKQEEMVQKFVEEVLR--INYKFL-------------- 94
Query: 121 DQLTCLRALRIEGTDNWELEEDQTNEILNGVEKLIHLRYLKLNLVGDLPEKCCELLNLQ- 179
++ ++ + + + + +Q + + N + +L L + LL L+
Sbjct: 95 --MSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQA---LLELRP 149
Query: 180 ---------------TLELENSSHFK---RFPQGIGKLINLRHLIFTEDLLEYMPKGIEK 221
+ L+ +K + I +NL++ E +LE
Sbjct: 150 AKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKI-FWLNLKNCNSPETVLE-------M 201
Query: 222 LTSLRTLSEFVVASGGGRYGSEACKLEGLRHLNHLRGSLKVRGLGNVADV-DEVKNAHLE 280
L L + S + ++ ++ LR LK + N V V+NA
Sbjct: 202 LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQ--AELRRLLKSKPYENCLLVLLNVQNAKAW 259
Query: 281 KKKNL-VRLIL--RFKDIDKAVKRWPEAISNENAAKHEAICEALWPPPNLESLEIAGFRG 337
NL +++L RFK + + + H ++ E
Sbjct: 260 NAFNLSCKILLTTRFKQVTDFL--------SAATTTHISLDHHSMTLTPDEVKS------ 305
Query: 338 RKMMLSTNWMASLNM-LKKLRLLNCPTCEIMPPLGQLPSLEILLIKDMTS----VERVGD 392
L + L+ + L P + S+ I+D + + V
Sbjct: 306 ----LLLKY---LDCRPQDLPRE---VLTTNP---RRLSIIAESIRDGLATWDNWKHVNC 352
Query: 393 ESLGIANGDHGAPSSSSVNNIAFPKLKELEFSGLQEWEDWDFRKEDITIMPQINSLSIYG 452
+ L SS+N + + +++ F L F I + LS+
Sbjct: 353 DKLTTII-------ESSLNVLEPAEYRKM-FDRLSV-----FP-PSAHIPTIL--LSLIW 396
Query: 453 CHKLKSLPDQLLQSSTLKTLRINRCRVLEEHFKKDRSKISHIPDIQIYERGP--GFFTLM 510
+KS ++ +L +E+ K+ IP I + + + L
Sbjct: 397 FDVIKSDVMVVVNKLHKYSL-------VEKQPKESTI---SIPSIYLELKVKLENEYALH 446
Query: 511 ARLISDCLSMMNMNPILSYSNRLPLASSHHLMARGEGIKNLSGHLPWIFYDVKAEDLVPV 570
++ Y +P +D ++DL+P
Sbjct: 447 RSIVD------------HY--NIPKT-----------------------FD--SDDLIPP 467
Query: 571 ALWEGVLGFFVTFESILPKVNSDDIAFGGRHTSDMNLAE------AKVLDIDFI 618
L +F + I G H ++ E LD F+
Sbjct: 468 YL----DQYF--YSHI------------GHHLKNIEHPERMTLFRMVFLDFRFL 503
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 50.6 bits (120), Expect = 1e-06
Identities = 96/626 (15%), Positives = 198/626 (31%), Gaps = 175/626 (27%)
Query: 2 EMEMIAEGYFDYLATRSLFQEFQRDEEGIVKRC--KMHDIVHDFALFLNKKECAAVEVEG 59
E++ I T LF +E +V++ ++ I + F + K E +
Sbjct: 50 EIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMT 109
Query: 60 V-----------------------EEPLLLINTCPEKLR-------HLMLVLGYEAPSLV 89
+P L + +LR + LG +
Sbjct: 110 RMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGV--LGSGKTWVA 167
Query: 90 -SIFNAIKLRSLILF--YWIPNL------DAMLPVLKGIFDQLTCLRALRIEGTDNWELE 140
+ + K++ + F +W+ NL + +L +L+ + Q+ R + + N +L
Sbjct: 168 LDVCLSYKVQCKMDFKIFWL-NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLR 226
Query: 141 EDQTNEILNGVEKLIHLRYLKLNLVGDLPEKCCELLNLQTLELENSSHFKRFPQGIGKLI 200
+ I + +L+ + + C LL L ++N+ + F +
Sbjct: 227 ---IHSIQAELRRLLKSKPYE---------NC--LLVLL--NVQNAKAWNAF------NL 264
Query: 201 NLRHLIFTEDLLEYMPKGI-EKLTSLRTLSEFVVASGGGRYGSEACKLEGLRHLNHLRGS 259
+ + L+ T K + + L++ T + E L
Sbjct: 265 SCKILLTTRF------KQVTDFLSAATTTHISLDHHSMTLTPDEVKSL------------ 306
Query: 260 LKVRGLGNVADVDEVKNAHLEKKKN--LVRLILRFKDIDKAVKRWPEAISNENAAKHEAI 317
L D N + +I A W + + N K I
Sbjct: 307 -----LLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLA--TW-DNWKHVNCDKLTTI 358
Query: 318 CEALWPPPNLESLEIAGFRGRKMMLSTNWMASLNMLKKLRLLNCPTCEIMPPLGQLPS-- 375
E+ +L LE A +R LS + PP +P+
Sbjct: 359 IES-----SLNVLEPAEYRKMFDRLS----------------------VFPPSAHIPTIL 391
Query: 376 LEIL-LIKDMTSVERVGDE--SLGIANGDHGAPSSSSVNNIAFPKLKELE---------- 422
L ++ + V V ++ + S+ S+ +I +LE
Sbjct: 392 LSLIWFDVIKSDVMVVVNKLHKYSLVEKQ-PKESTISIPSIYLELKVKLENEYALHRSIV 450
Query: 423 --FSGLQEWEDWDFRKEDITIMPQINSLSIY---GCHKLKSLPDQLLQSSTLKTLRINRC 477
++ + ++ D +P Y G H LK++ + + + + + ++
Sbjct: 451 DHYNIPKTFDSDDL-------IPPYLDQYFYSHIGHH-LKNI-EHPERMTLFRMVFLD-F 500
Query: 478 RVLEEHFKKD-------RSKISHIPDIQIYERGPGFFT----LMARLISDCLS-MMNMNP 525
R LE+ + D S ++ + ++ Y+ + RL++ L + +
Sbjct: 501 RFLEQKIRHDSTAWNASGSILNTLQQLKFYKP---YICDNDPKYERLVNAILDFLPKIEE 557
Query: 526 IL---SYSNRLPLASSHHLMARGEGI 548
L Y++ L +A LMA E I
Sbjct: 558 NLICSKYTDLLRIA----LMAEDEAI 579
|
| >1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens} Length = 591 | Back alignment and structure |
|---|
Score = 56.4 bits (136), Expect = 2e-08
Identities = 11/59 (18%), Positives = 19/59 (32%), Gaps = 3/59 (5%)
Query: 4 EMIAEGYFDYLATRSLFQEFQRDEEGIVKRCKMHDIVHDFALFLNKKECAAVEVEGVEE 62
E +SL D G R +HD+ DF N + + + + +
Sbjct: 408 TEEVEDILQEFVNKSLLF---CDRNGKSFRYYLHDLQVDFLTEKNCSQLQDLHKKIITQ 463
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 48.7 bits (116), Expect = 4e-06
Identities = 27/117 (23%), Positives = 55/117 (47%), Gaps = 7/117 (5%)
Query: 113 LPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEILNGVEKLIHLRYLKLNLVGDLPEKC 172
L + + Q+ L+ L I + D+ + + L+ L + N++ D +C
Sbjct: 363 LSKIAEMTTQMKSLQQLDISQN---SVSYDEKKGDCSWTKSLLSL-NMSSNILTDTIFRC 418
Query: 173 CELLNLQTLELENSSHFKRFPQGIGKLINLRHLIFTEDLLEYMPKGI-EKLTSLRTL 228
++ L+L ++ K P+ + KL L+ L + L+ +P GI ++LTSL+ +
Sbjct: 419 -LPPRIKVLDLHSN-KIKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKI 473
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 47.3 bits (113), Expect = 1e-05
Identities = 30/154 (19%), Positives = 53/154 (34%), Gaps = 23/154 (14%)
Query: 90 SIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDN--WELEEDQTNEI 147
+ F I + S+ L N + P K +F + L ++ + N E+ ++ +
Sbjct: 428 TPFKGINVSSINLSN---NQISKFP--KELFSTGSPLSSINLM--GNMLTEIPKNSLKDE 480
Query: 148 LNGVEKLIHLRYLKL--NLVGDLPE--KCCELLNLQTLEL-ENSSHFKRFPQGIGKLINL 202
+ L + L N + L + + L L ++L N F +FP L
Sbjct: 481 NENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYN--SFSKFPTQPLNSSTL 538
Query: 203 RHLIFTED-------LLEYMPKGIEKLTSLRTLS 229
+ L P+GI SL L
Sbjct: 539 KGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQ 572
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 45.6 bits (108), Expect = 4e-05
Identities = 22/200 (11%), Positives = 48/200 (24%), Gaps = 42/200 (21%)
Query: 63 PLLLINTCPEKLRHLMLVLGYEAPSLVSIFNAIKLRSLILFYWIPNLDAMLPVLKGI-FD 121
L + + + +L L + P +K I D
Sbjct: 364 RLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQ---DAINRNPEMKPIKKD 420
Query: 122 QLTCLRALRIEGTDNWELEEDQTNEILNGVEKLIHLRYLKL------------------- 162
L+ +I N + I +++L L+ +
Sbjct: 421 SRISLKDTQIGNLTN------RITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANS 474
Query: 163 ---NLVGDLPEKCCELLNLQTLELENSSHFKRFPQGIGKLINLRHL----------IFTE 209
+ L +L +EL N + + P + L L+ L +
Sbjct: 475 DYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLK 534
Query: 210 DLLEYMPKGIEKLTSLRTLS 229
+ + ++
Sbjct: 535 ADWTRLADDEDTGPKIQIFY 554
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251 | Back alignment and structure |
|---|
Score = 42.4 bits (100), Expect = 2e-04
Identities = 43/156 (27%), Positives = 64/156 (41%), Gaps = 17/156 (10%)
Query: 79 LVLGYEAPSLVSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWE 138
L L + +S L L N L G+FD LT L L
Sbjct: 40 LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSA--GVFDDLTELGTLG-------- 89
Query: 139 LEEDQTNEILNGV-EKLIHLRYLKL--NLVGDLPEKCCE-LLNLQTLELENSSHFKRFPQ 194
L +Q + GV + L L L L N + LP + L L+ L L N++ + P
Sbjct: 90 LANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRL-NTNQLQSIPA 148
Query: 195 GI-GKLINLRHLIFTEDLLEYMPKGI-EKLTSLRTL 228
G KL NL+ L + + L+ +P G ++L L+T+
Sbjct: 149 GAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTI 184
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 43.2 bits (102), Expect = 2e-04
Identities = 26/140 (18%), Positives = 48/140 (34%), Gaps = 20/140 (14%)
Query: 96 KLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEILNGV-EKL 154
L L L +P L L LR L N I + ++L
Sbjct: 153 SLEQLTLEK---CNLTSIP--TEALSHLHGLIVLR--------LRHLNINAIRDYSFKRL 199
Query: 155 IHLRYLKL---NLVGDLPEKCCELLNLQTLELENSSHFKRFPQG-IGKLINLRHLIFTED 210
L+ L++ + + C LNL +L + + P + L+ LR L + +
Sbjct: 200 YRLKVLEISHWPYLDTMTPNCLYGLNLTSLSI-THCNLTAVPYLAVRHLVYLRFLNLSYN 258
Query: 211 LLEYMPKGI-EKLTSLRTLS 229
+ + + +L L+ +
Sbjct: 259 PISTIEGSMLHELLRLQEIQ 278
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 43.2 bits (101), Expect = 2e-04
Identities = 34/180 (18%), Positives = 65/180 (36%), Gaps = 21/180 (11%)
Query: 116 LKGIFDQLTCLRALRIEGTDNWELEEDQTNEILNGVE--KLIHLRYLKLNLVGDLPEKCC 173
+ + LT + +R +E E Q L V+ + +L L+ + +
Sbjct: 379 PENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKM 438
Query: 174 ELLNLQTLELENSSHFKRFPQGIGKLINLRHLIFTEDLLEYMPKGIEKLTSLRTLSEFVV 233
E +++ L L + + +L+ + HL + + L +P + L L L
Sbjct: 439 EYADVRVLHLAHKDLTV--LCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQ---- 492
Query: 234 ASGGGRYGSEACKLEGLRHLNHLRGSLKVRGLGN--VADVDEVKNAHLEKKKNLVRLILR 291
AS LE + + +L L+ L N + ++ L LV L L+
Sbjct: 493 ASD--------NALENVDGVANLP-RLQELLLCNNRLQQSAAIQ--PLVSCPRLVLLNLQ 541
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 42.4 bits (100), Expect = 3e-04
Identities = 32/117 (27%), Positives = 54/117 (46%), Gaps = 15/117 (12%)
Query: 118 GIFDQLTCLRALRIEGTDNWELEEDQTNEILNGV-EKLIHLRYLKL--NLVGDLPEKCCE 174
+F T L L L +++ N+I + L HL L L N +G + + E
Sbjct: 293 SVFSHFTDLEQL--------TLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFE 344
Query: 175 -LLNLQTLELENSSHFKRFPQGI-GKLINLRHLIFTEDLLEYMPKGI-EKLTSLRTL 228
L L+ L+L + +H + L NL+ L + L+ +P GI ++LTSL+ +
Sbjct: 345 NLDKLEVLDL-SYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKI 400
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 41.1 bits (97), Expect = 5e-04
Identities = 38/158 (24%), Positives = 58/158 (36%), Gaps = 30/158 (18%)
Query: 96 KLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEED------------- 142
L +LIL N L + G F L+ L+ L T+ LE
Sbjct: 77 HLSTLILTG---NPIQSLAL--GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNV 131
Query: 143 QTNEI----LNGV-EKLIHLRYLKL--NLVGDLPEKCCE-LLNLQTLELE---NSSHFKR 191
N I L L +L +L L N + + L + L L + +
Sbjct: 132 AHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF 191
Query: 192 FPQGIGKLINLRHLIFTEDLLEYMPKGI-EKLTSLRTL 228
G K I L+ L + L+ +P GI ++LTSL+ +
Sbjct: 192 IQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKI 229
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 41.6 bits (98), Expect = 6e-04
Identities = 33/155 (21%), Positives = 60/155 (38%), Gaps = 23/155 (14%)
Query: 93 NAIK-LRSLILFYWIPNLDAML--------PVLKGIFDQLTCLRALRIEGTDNWELEEDQ 143
N K L LF + L + + + F LT L L I+ +D E
Sbjct: 134 NPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEP-- 191
Query: 144 TNEILNGVEKLIHLRYLKLNLVGDLPEKCCELL-NLQTLELEN----SSHFKRFPQGI-- 196
+ L ++ + HL L + L E ++ +++ LEL + + HF G
Sbjct: 192 --KSLKSIQNVSHL-ILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETN 248
Query: 197 --GKLINLRHLIFTEDLLEYMPKGIEKLTSLRTLS 229
K R++ T++ L + K + +++ L L
Sbjct: 249 SLIKKFTFRNVKITDESLFQVMKLLNQISGLLELE 283
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229 | Back alignment and structure |
|---|
Score = 40.8 bits (96), Expect = 6e-04
Identities = 30/101 (29%), Positives = 51/101 (50%), Gaps = 6/101 (5%)
Query: 134 TDNWELEEDQTNEILNGV-EKLIHLRYLKL--NLVGDLPEKCC-ELLNLQTLELENSSHF 189
L ++Q ++ GV + LI+L+ L L N +G LP L L L+L ++
Sbjct: 42 AQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDL-GTNQL 100
Query: 190 KRFPQGI-GKLINLRHLIFTEDLLEYMPKGIEKLTSLRTLS 229
P + +L++L+ L + L +P+GIE+LT L L+
Sbjct: 101 TVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLA 141
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229 | Back alignment and structure |
|---|
Score = 40.4 bits (95), Expect = 7e-04
Identities = 33/116 (28%), Positives = 55/116 (47%), Gaps = 14/116 (12%)
Query: 118 GIFDQLTCLRALRIEGTDNWELEEDQTNEILNGV-EKLIHLRYLKL--NLVGDLPEKCCE 174
G+FD L L+ L L +Q + GV + L L L L N + LP +
Sbjct: 58 GVFDSLINLKEL--------YLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFD 109
Query: 175 -LLNLQTLELENSSHFKRFPQGIGKLINLRHLIFTEDLLEYMPKGI-EKLTSLRTL 228
L++L+ L + + P+GI +L +L HL ++ L+ +P G ++L+SL
Sbjct: 110 RLVHLKELFM-CCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHA 164
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 41.5 bits (97), Expect = 7e-04
Identities = 14/84 (16%), Positives = 29/84 (34%), Gaps = 10/84 (11%)
Query: 152 EKLIHLRYLKL--NLVGDLPEKCCELLNLQTLELENSSHFKRFPQGIGKLINLRHLIFTE 209
E L L + N + LPE +L+ L++ + + P + +
Sbjct: 157 ELPTSLEVLSVRNNQLTFLPE---LPESLEALDVSTN-LLESLPAVPVRNHHSEETEIFF 212
Query: 210 DL----LEYMPKGIEKLTSLRTLS 229
+ ++P+ I L T+
Sbjct: 213 RCRENRITHIPENILSLDPTCTII 236
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 | Back alignment and structure |
|---|
Score = 41.5 bits (97), Expect = 8e-04
Identities = 67/450 (14%), Positives = 126/450 (28%), Gaps = 88/450 (19%)
Query: 64 LLLINTCPEKLRHLMLV--LGYEAPSLVSIF-NAIKLRSLILFYWIPNLDAMLPVLKGIF 120
L + L L L G+ L+SI + K+++L++ + L +
Sbjct: 130 DRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLM-EESSFSEKDGKWLHELA 188
Query: 121 DQLTCLRALRIEGTDNWELEEDQTNEILNG-VEKLIHLRYLKLNLVGDLPEKCCELL--N 177
T L L T+ ++ + + L L +K+ L N
Sbjct: 189 QHNTSLEVLNFYMTEFAKI----SPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAAN 244
Query: 178 LQTLELENSSHFKRFPQGIGKLINLRHLI---FTEDLLEYMPKGIEKLTSLRTLSEFVVA 234
L+ + + P+ L+ R L + MP +R L
Sbjct: 245 LEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYAL 304
Query: 235 SGGGRYGSEACKLEGLRHLNHLRGSLKVRGLGNVADVDEVKNAHLEKKKNLVRLILRFKD 294
+ + K L L R + RGL +A + K L RL +
Sbjct: 305 LETEDHCTLIQKCPNLEVLE-TRNVIGDRGLEVLA----------QYCKQLKRLRIERGA 353
Query: 295 IDKAVKRWPEAISNENAAKHEAICEALWPPPNLESLEI-------AGFRGRKMMLSTNWM 347
++ ++ +S A+ + LE + + + T
Sbjct: 354 DEQGMEDEEGLVSQRGL---IALAQGC---QELEYMAVYVSDITNESLE----SIGTY-- 401
Query: 348 ASLNMLKKLRLLNCPTCE----------IMPPLGQLPSLEILLIKDMTSVERVGDESLG- 396
L L RL+ E + L L + D L
Sbjct: 402 --LKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYL--RQGGLTDLGLSY 457
Query: 397 IANGDHGAPSSSSVNNIAFPKLKELEFSGLQEWEDWDFRKEDITIM------PQINSLSI 450
I P ++ + + E D +M P + L +
Sbjct: 458 IGQY--------------SPNVRWMLLGYVGE--------SDEGLMEFSRGCPNLQKLEM 495
Query: 451 YGCHKL-KSLPDQLLQSSTLKTLRINRCRV 479
GC +++ + + +L+ L + R
Sbjct: 496 RGCCFSERAIAAAVTKLPSLRYLWVQGYRA 525
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 40.7 bits (96), Expect = 8e-04
Identities = 17/112 (15%), Positives = 40/112 (35%), Gaps = 6/112 (5%)
Query: 118 GIFDQLTCLRALRIEGTDNWELEEDQTNEILNGVEKLIHLRYLKLNLVGDLPEKCCELLN 177
+ ++ L ++ N E++ E+ + L HL L+ N + D+ +
Sbjct: 138 LDEGCRSRVQYLDLKL--N-EIDTVNFAELAASSDTLEHL-NLQYNFIYDVKGQVV-FAK 192
Query: 178 LQTLELENSSHFKRFPQGIGKLINLRHLIFTEDLLEYMPKGIEKLTSLRTLS 229
L+TL+L ++ + + + L + K + +L
Sbjct: 193 LKTLDLSSN-KLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFD 243
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 625 | |||
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 99.97 | |
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 99.96 | |
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 99.96 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 99.96 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 99.96 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 99.96 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 99.96 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.96 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 99.96 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 99.96 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 99.95 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 99.95 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 99.95 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 99.95 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 99.94 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.94 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 99.94 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 99.94 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 99.94 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 99.94 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 99.94 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 99.94 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 99.93 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 99.93 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 99.93 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 99.93 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 99.93 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 99.92 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 99.92 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 99.92 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 99.92 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 99.91 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 99.91 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 99.91 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 99.91 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 99.9 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 99.89 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 99.89 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 99.89 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 99.89 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 99.88 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 99.87 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 99.87 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 99.87 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 99.87 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 99.86 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 99.86 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 99.85 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 99.82 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 99.82 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.82 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 99.81 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.81 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.8 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.77 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.77 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.77 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.77 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 99.77 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.76 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.75 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.75 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.75 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.75 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.74 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.74 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.74 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 99.73 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 99.73 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.72 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.69 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.67 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.67 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.66 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 99.66 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.65 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.64 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 99.62 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.62 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 99.62 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 99.62 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 99.61 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 99.6 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 99.6 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 99.6 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.6 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 99.58 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 99.58 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 99.58 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 99.57 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 99.56 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 99.54 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 99.51 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 99.51 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 99.5 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 99.47 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 99.46 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 99.45 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 99.45 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 99.44 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 99.44 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 99.44 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.43 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 99.41 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 99.41 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 99.4 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 99.4 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 99.4 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.39 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 99.38 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 99.38 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 99.38 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 99.38 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.37 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 99.37 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 99.36 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.36 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 99.34 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 99.34 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 99.34 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 99.32 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.3 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 99.28 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 99.26 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 99.23 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 99.23 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.23 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 99.22 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 99.2 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 99.19 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 99.16 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 99.15 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 99.14 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 99.11 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 99.05 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 99.02 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 99.0 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 98.97 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 98.91 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 98.88 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 98.76 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 98.69 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 98.68 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 98.58 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 98.51 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 98.5 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 98.38 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 98.32 | |
| 4gt6_A | 394 | Cell surface protein; leucine rich repeats, putati | 98.18 | |
| 4gt6_A | 394 | Cell surface protein; leucine rich repeats, putati | 98.13 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 98.0 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 97.97 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 97.97 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 97.92 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 97.89 | |
| 4h09_A | 379 | Hypothetical leucine rich repeat protein; two LRR_ | 97.68 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 97.62 | |
| 4h09_A | 379 | Hypothetical leucine rich repeat protein; two LRR_ | 97.59 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 97.33 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 97.26 | |
| 2a5y_B | 549 | CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis | 97.22 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 93.52 | |
| 3rfe_A | 130 | Platelet glycoprotein IB beta chain; platelet surf | 92.33 | |
| 1pgv_A | 197 | TMD-1, tropomodulin TMD-1; structural genomics, PS | 91.8 | |
| 1z6t_A | 591 | APAF-1, apoptotic protease activating factor 1; ca | 87.95 | |
| 3rfe_A | 130 | Platelet glycoprotein IB beta chain; platelet surf | 87.29 | |
| 1pgv_A | 197 | TMD-1, tropomodulin TMD-1; structural genomics, PS | 87.16 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 80.68 |
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
Probab=99.97 E-value=4.4e-31 Score=294.48 Aligned_cols=376 Identities=13% Similarity=0.080 Sum_probs=239.9
Q ss_pred CceEEEEEEcCCC-CcchhhhccCCcceEEEeecccC-------------------------------------------
Q 037953 72 EKLRHLMLVLGYE-APSLVSIFNAIKLRSLILFYWIP------------------------------------------- 107 (625)
Q Consensus 72 ~~lr~L~l~~~~~-~~~~~~~~~l~~Lr~L~L~~~~~------------------------------------------- 107 (625)
.+++.|++.++.+ +.+|+++.++++|++|+|++|..
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~ 160 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSD 160 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHH
Confidence 4799999999998 68899999999999999999832
Q ss_pred ---------------------------------CccccCchhhHHHhcCCceeEEEeecCCCccccccchhh--------
Q 037953 108 ---------------------------------NLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNE-------- 146 (625)
Q Consensus 108 ---------------------------------~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~-------- 146 (625)
.+.+ +| ..++++++|++|+|+ +|.+..
T Consensus 161 ~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip---~~l~~l~~L~~L~Ls--------~n~l~~~~~~~~~~ 228 (636)
T 4eco_A 161 LIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VS---KAVMRLTKLRQFYMG--------NSPFVAENICEAWE 228 (636)
T ss_dssp HHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-EC---GGGGGCTTCCEEEEE--------SCCCCGGGBSSSCS
T ss_pred HHHHHhhcCccccccccccccchhhhhhccccCCCcc-CC---HHHhcccCCCEEECc--------CCcccccccccccc
Confidence 2223 77 889999999999999 888766
Q ss_pred ----------hhcccc--cccccceecC--CC-CCCCchhhcCCCCCceEeecCCCCCC--ccccccccc------cccc
Q 037953 147 ----------ILNGVE--KLIHLRYLKL--NL-VGDLPEKCCELLNLQTLELENSSHFK--RFPQGIGKL------INLR 203 (625)
Q Consensus 147 ----------lp~~~~--~L~~L~~L~L--~~-l~~lP~~i~~L~~L~~L~L~~~~~l~--~lp~~l~~L------~~L~ 203 (625)
+|..++ ++++|++|+| |. .+.+|..++++++|++|++++|..+. .+|..++++ ++|+
T Consensus 229 ~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~ 308 (636)
T 4eco_A 229 NENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQ 308 (636)
T ss_dssp CTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCC
T ss_pred ccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCC
Confidence 999999 9999999999 66 88999999999999999999997344 699998887 9999
Q ss_pred eEEecCcccccccc--cCCCccccccCCceEecCCCCcCCCcccChhccccccccccceEEeccCCCCChhHHHHhccCC
Q 037953 204 HLIFTEDLLEYMPK--GIEKLTSLRTLSEFVVASGGGRYGSEACKLEGLRHLNHLRGSLKVRGLGNVADVDEVKNAHLEK 281 (625)
Q Consensus 204 ~L~l~~~~l~~lp~--~i~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~ 281 (625)
+|++++|.++.+|. .++++++|++|++..+...+ .++ .+..+++|+ .|.+++.. +. .++..+..
T Consensus 309 ~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g----~ip----~~~~l~~L~-~L~L~~N~----l~-~lp~~l~~ 374 (636)
T 4eco_A 309 IIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEG----KLP----AFGSEIKLA-SLNLAYNQ----IT-EIPANFCG 374 (636)
T ss_dssp EEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEE----ECC----CCEEEEEES-EEECCSSE----EE-ECCTTSEE
T ss_pred EEECCCCcCCccCchhhhccCCCCCEEeCcCCcCcc----chh----hhCCCCCCC-EEECCCCc----cc-cccHhhhh
Confidence 99999999999998 89999999999887665442 112 555566666 67766532 22 34455777
Q ss_pred CCC-CCeEEEEEecccccccCCcccccccchhhHHHHhhcCCCC--CCCcEEEEeccCCCcccCCchhhc-------ccc
Q 037953 282 KKN-LVRLILRFKDIDKAVKRWPEAISNENAAKHEAICEALWPP--PNLESLEIAGFRGRKMMLSTNWMA-------SLN 351 (625)
Q Consensus 282 l~~-L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~L~~L~L~~~~~~~~~~~p~~l~-------~l~ 351 (625)
+++ |+.|++++|.++ .++..+... ++|+.|++++|...... |.++. .++
T Consensus 375 l~~~L~~L~Ls~N~l~-------------------~lp~~~~~~~l~~L~~L~Ls~N~l~~~~--p~~l~~~~~~~~~~~ 433 (636)
T 4eco_A 375 FTEQVENLSFAHNKLK-------------------YIPNIFDAKSVSVMSAIDFSYNEIGSVD--GKNFDPLDPTPFKGI 433 (636)
T ss_dssp ECTTCCEEECCSSCCS-------------------SCCSCCCTTCSSCEEEEECCSSCTTTTT--TCSSCTTCSSCCCCC
T ss_pred hcccCcEEEccCCcCc-------------------ccchhhhhcccCccCEEECcCCcCCCcc--hhhhcccccccccCC
Confidence 888 999998888643 122222222 24444444444433311 33333 334
Q ss_pred cccEEEEeCCCCCCCCCC--CCCCCCcceeeccccccceeeCccCCCCC--------CCCCCCCCC-----CCCCCC--C
Q 037953 352 MLKKLRLLNCPTCEIMPP--LGQLPSLEILLIKDMTSVERVGDESLGIA--------NGDHGAPSS-----SSVNNI--A 414 (625)
Q Consensus 352 ~L~~L~L~~c~~l~~l~~--l~~l~~L~~L~L~~~~~l~~l~~~~~~~~--------~~~~~~~~~-----~~~~~~--~ 414 (625)
+|+.|++++|. +..+|. +..+++|+.|++++|. ++.+|...+... .+..+.++. .+.... .
T Consensus 434 ~L~~L~Ls~N~-l~~lp~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~ 511 (636)
T 4eco_A 434 NVSSINLSNNQ-ISKFPKELFSTGSPLSSINLMGNM-LTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATT 511 (636)
T ss_dssp CEEEEECCSSC-CCSCCTHHHHTTCCCSEEECCSSC-CSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTT
T ss_pred CCCEEECcCCc-cCcCCHHHHccCCCCCEEECCCCC-CCCcCHHHhccccccccccCCccEEECcCCcCCccChhhhhcc
Confidence 44444444432 223332 2234444444444433 333433222110 111111110 011122 5
Q ss_pred CCCCCeeeccCcccccccccCCCCcccCCCccEEEEec------CCCCCcCCcCCCCCCCCCEEEEecCcchhhcccccc
Q 037953 415 FPKLKELEFSGLQEWEDWDFRKEDITIMPQINSLSIYG------CHKLKSLPDQLLQSSTLKTLRINRCRVLEEHFKKDR 488 (625)
Q Consensus 415 l~~L~~L~L~~~~~l~~~~~~~~~~~~l~~L~~L~l~~------c~~l~~lp~~~~~l~~L~~L~l~~c~~L~~~~~~~~ 488 (625)
+++|+.|+++++. +..++. .+..+++|+.|++++ |...+.+|..+..+++|++|++++|.. +.+| ..+
T Consensus 512 l~~L~~L~Ls~N~-l~~ip~---~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip-~~~ 585 (636)
T 4eco_A 512 LPYLVGIDLSYNS-FSKFPT---QPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVN-EKI 585 (636)
T ss_dssp CTTCCEEECCSSC-CSSCCC---GGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCC-SCC
T ss_pred CCCcCEEECCCCC-CCCcCh---hhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccC-HhH
Confidence 6677777777653 333322 133567777777743 333455676666677777777777755 5555 222
Q ss_pred cccCCCCceEEecCCC
Q 037953 489 SKISHIPDIQIYERGP 504 (625)
Q Consensus 489 ~~l~~l~~l~~~~~~~ 504 (625)
. +++..+.+.++..
T Consensus 586 ~--~~L~~L~Ls~N~l 599 (636)
T 4eco_A 586 T--PNISVLDIKDNPN 599 (636)
T ss_dssp C--TTCCEEECCSCTT
T ss_pred h--CcCCEEECcCCCC
Confidence 2 4555555555433
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-30 Score=297.71 Aligned_cols=389 Identities=16% Similarity=0.108 Sum_probs=194.3
Q ss_pred CCCceEEEEEEcCCCCcchhhhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchh-hhh
Q 037953 70 CPEKLRHLMLVLGYEAPSLVSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTN-EIL 148 (625)
Q Consensus 70 ~~~~lr~L~l~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~-~lp 148 (625)
...++++|++++|.+...++.+.++++|++|++++|. +.+.+| ..++++++|++|+++ +|.+. .+|
T Consensus 198 ~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~--l~~~~~---~~l~~l~~L~~L~Ls--------~n~l~~~~~ 264 (768)
T 3rgz_A 198 RCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNK--LSGDFS---RAISTCTELKLLNIS--------SNQFVGPIP 264 (768)
T ss_dssp TCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSC--CCSCHH---HHTTTCSSCCEEECC--------SSCCEESCC
T ss_pred cCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCc--CCCccc---HHHhcCCCCCEEECC--------CCcccCccC
Confidence 3567777777777774433347777788888887754 445566 777777888888777 44432 222
Q ss_pred cccccccccceecC--CC-CCCCchhhcCC-CCCceEeecCCCCCCccccccccccccceEEecCcccc-ccccc-CCCc
Q 037953 149 NGVEKLIHLRYLKL--NL-VGDLPEKCCEL-LNLQTLELENSSHFKRFPQGIGKLINLRHLIFTEDLLE-YMPKG-IEKL 222 (625)
Q Consensus 149 ~~~~~L~~L~~L~L--~~-l~~lP~~i~~L-~~L~~L~L~~~~~l~~lp~~l~~L~~L~~L~l~~~~l~-~lp~~-i~~L 222 (625)
.. .+++|++|++ |. .+.+|..++++ ++|++|++++|...+.+|..++++++|++|+++.|.+. .+|.. ++++
T Consensus 265 ~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l 342 (768)
T 3rgz_A 265 PL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKM 342 (768)
T ss_dssp CC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTC
T ss_pred cc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcC
Confidence 21 4444555555 22 22445444443 55555555555422244444555555555555444443 44433 4444
Q ss_pred cccccCCceEecCCCCcCCCcccChhccc-c-----------------------ccccccceEEeccCCCCChhHHHHhc
Q 037953 223 TSLRTLSEFVVASGGGRYGSEACKLEGLR-H-----------------------LNHLRGSLKVRGLGNVADVDEVKNAH 278 (625)
Q Consensus 223 ~~L~~L~~~~~~~~~~~~~~~~~~l~~l~-~-----------------------L~~L~~~L~l~~~~~~~~~~~~~~~~ 278 (625)
++|++|++..+.... ..+..+..+. + +++|+ .|.+.++ .+.+..+..
T Consensus 343 ~~L~~L~Ls~n~l~~----~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~-~L~L~~n----~l~~~~p~~ 413 (768)
T 3rgz_A 343 RGLKVLDLSFNEFSG----ELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQ-ELYLQNN----GFTGKIPPT 413 (768)
T ss_dssp TTCCEEECCSSEEEE----CCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCC-EEECCSS----EEEEECCGG
T ss_pred CCCCEEeCcCCccCc----cccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCcc-EEECCCC----ccccccCHH
Confidence 555544443332211 0111111111 1 22233 3333331 111223334
Q ss_pred cCCCCCCCeEEEEEecccccccCCcccccc------cchhhHHHHhhcCCCCCCCcEEEEeccCCCcccCCchhhccccc
Q 037953 279 LEKKKNLVRLILRFKDIDKAVKRWPEAISN------ENAAKHEAICEALWPPPNLESLEIAGFRGRKMMLSTNWMASLNM 352 (625)
Q Consensus 279 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~p~~l~~l~~ 352 (625)
+..+++|+.|++++|.+++..+..-..... ........++..+..+++|+.|++++|...... |.++..+++
T Consensus 414 l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~--p~~l~~l~~ 491 (768)
T 3rgz_A 414 LSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEI--PSGLSNCTN 491 (768)
T ss_dssp GGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCC--CGGGGGCTT
T ss_pred HhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcC--CHHHhcCCC
Confidence 555556666666555432111100000000 000001123333444455555555555444211 555555555
Q ss_pred ccEEEEeCCCCCCCCC-CCCCCCCcceeeccccccceeeCccCCCCCCCCCCCCCCCCCCCCCCCCCCeeeccCcccccc
Q 037953 353 LKKLRLLNCPTCEIMP-PLGQLPSLEILLIKDMTSVERVGDESLGIANGDHGAPSSSSVNNIAFPKLKELEFSGLQEWED 431 (625)
Q Consensus 353 L~~L~L~~c~~l~~l~-~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~ 431 (625)
|+.|++++|...+.+| +++.+++|++|++++|...+.+|.. +..+++|+.|+++++.-...
T Consensus 492 L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~------------------l~~l~~L~~L~Ls~N~l~g~ 553 (768)
T 3rgz_A 492 LNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAE------------------LGDCRSLIWLDLNTNLFNGT 553 (768)
T ss_dssp CCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGG------------------GGGCTTCCEEECCSSEEESB
T ss_pred CCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHH------------------HcCCCCCCEEECCCCccCCc
Confidence 5555555554444444 2455555555555555433344433 45566777777765432111
Q ss_pred ccc-------------------------------------------------------------------CCCCcccCCC
Q 037953 432 WDF-------------------------------------------------------------------RKEDITIMPQ 444 (625)
Q Consensus 432 ~~~-------------------------------------------------------------------~~~~~~~l~~ 444 (625)
++. .+..++.+++
T Consensus 554 ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~ 633 (768)
T 3rgz_A 554 IPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGS 633 (768)
T ss_dssp CCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBC
T ss_pred CChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhcccc
Confidence 110 0011334677
Q ss_pred ccEEEEecCCCCCcCCcCCCCCCCCCEEEEecCcchhhcccccccccCCCCceEEecCC
Q 037953 445 INSLSIYGCHKLKSLPDQLLQSSTLKTLRINRCRVLEEHFKKDRSKISHIPDIQIYERG 503 (625)
Q Consensus 445 L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~l~~l~~l~~~~~~ 503 (625)
|+.|++++|...+.+|..++++++|+.|++++|..-..+| ..+..++++..+.+..+.
T Consensus 634 L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip-~~l~~L~~L~~LdLs~N~ 691 (768)
T 3rgz_A 634 MMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIP-DEVGDLRGLNILDLSSNK 691 (768)
T ss_dssp CCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCC-GGGGGCTTCCEEECCSSC
T ss_pred ccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCC-hHHhCCCCCCEEECCCCc
Confidence 8888888865555788888888888888888887666666 566666677666665543
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.2e-30 Score=295.50 Aligned_cols=383 Identities=20% Similarity=0.165 Sum_probs=255.8
Q ss_pred CCceEEEEEEcCCCC-cchhhhccC-CcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchh-hh
Q 037953 71 PEKLRHLMLVLGYEA-PSLVSIFNA-IKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTN-EI 147 (625)
Q Consensus 71 ~~~lr~L~l~~~~~~-~~~~~~~~l-~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~-~l 147 (625)
.+++++|++.+|.+. .+|..+... ++|++|++++|. +.+.+| ..|+++++|++|+++ +|.+. .+
T Consensus 268 l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~--l~~~~p---~~~~~l~~L~~L~L~--------~n~l~~~i 334 (768)
T 3rgz_A 268 LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNH--FYGAVP---PFFGSCSLLESLALS--------SNNFSGEL 334 (768)
T ss_dssp CTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSE--EEECCC---GGGGGCTTCCEEECC--------SSEEEEEC
T ss_pred cCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCc--CCCccc---hHHhcCCCccEEECC--------CCcccCcC
Confidence 345555555555542 445544442 666666666643 344555 556666666666666 55543 55
Q ss_pred hcc-cccccccceecC--CCC-CCCchhhcCCC-CCceEeecCCCCCCcccccccc--ccccceEEecCcccc-cccccC
Q 037953 148 LNG-VEKLIHLRYLKL--NLV-GDLPEKCCELL-NLQTLELENSSHFKRFPQGIGK--LINLRHLIFTEDLLE-YMPKGI 219 (625)
Q Consensus 148 p~~-~~~L~~L~~L~L--~~l-~~lP~~i~~L~-~L~~L~L~~~~~l~~lp~~l~~--L~~L~~L~l~~~~l~-~lp~~i 219 (625)
|.. ++++++|++|++ |.+ +.+|..+.++. +|++|++++|...+.+|..+.. +++|++|+++.|.+. .+|..+
T Consensus 335 p~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l 414 (768)
T 3rgz_A 335 PMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTL 414 (768)
T ss_dssp CHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGG
T ss_pred CHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHH
Confidence 544 666666666666 333 35666666665 6666666666633345555544 666777777555554 566677
Q ss_pred CCccccccCCceEecCCCCcCCCcccChhccccccccccceEEeccCCCCChhHHHHhccCCCCCCCeEEEEEecccccc
Q 037953 220 EKLTSLRTLSEFVVASGGGRYGSEACKLEGLRHLNHLRGSLKVRGLGNVADVDEVKNAHLEKKKNLVRLILRFKDIDKAV 299 (625)
Q Consensus 220 ~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 299 (625)
+++++|+.|++..+.... .....+.++++|+ .|.+.++. ..+..+..+..+++|+.|++++|.++
T Consensus 415 ~~l~~L~~L~Ls~N~l~~-------~~p~~l~~l~~L~-~L~L~~n~----l~~~~p~~~~~l~~L~~L~L~~N~l~--- 479 (768)
T 3rgz_A 415 SNCSELVSLHLSFNYLSG-------TIPSSLGSLSKLR-DLKLWLNM----LEGEIPQELMYVKTLETLILDFNDLT--- 479 (768)
T ss_dssp GGCTTCCEEECCSSEEES-------CCCGGGGGCTTCC-EEECCSSC----CCSCCCGGGGGCTTCCEEECCSSCCC---
T ss_pred hcCCCCCEEECcCCcccC-------cccHHHhcCCCCC-EEECCCCc----ccCcCCHHHcCCCCceEEEecCCccc---
Confidence 777777777766554332 2223344555555 66666533 22334556777888888888877532
Q ss_pred cCCcccccccchhhHHHHhhcCCCCCCCcEEEEeccCCCcccCCchhhcccccccEEEEeCCCCCCCCC-CCCCCCCcce
Q 037953 300 KRWPEAISNENAAKHEAICEALWPPPNLESLEIAGFRGRKMMLSTNWMASLNMLKKLRLLNCPTCEIMP-PLGQLPSLEI 378 (625)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~p~~l~~l~~L~~L~L~~c~~l~~l~-~l~~l~~L~~ 378 (625)
+..+..+..+++|+.|++++|...... |.+++.+++|++|++++|...+.+| .++.+++|+.
T Consensus 480 ---------------~~~p~~l~~l~~L~~L~L~~N~l~~~~--p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~ 542 (768)
T 3rgz_A 480 ---------------GEIPSGLSNCTNLNWISLSNNRLTGEI--PKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIW 542 (768)
T ss_dssp ---------------SCCCGGGGGCTTCCEEECCSSCCCSCC--CGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCE
T ss_pred ---------------CcCCHHHhcCCCCCEEEccCCccCCcC--ChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCE
Confidence 345667788999999999999877422 9999999999999999988777777 4889999999
Q ss_pred eeccccccceeeCccCCCCCCCCCCCCC----------------------------------------------------
Q 037953 379 LLIKDMTSVERVGDESLGIANGDHGAPS---------------------------------------------------- 406 (625)
Q Consensus 379 L~L~~~~~l~~l~~~~~~~~~~~~~~~~---------------------------------------------------- 406 (625)
|++++|+..+.+|..+............
T Consensus 543 L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g 622 (768)
T 3rgz_A 543 LDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGG 622 (768)
T ss_dssp EECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEE
T ss_pred EECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecc
Confidence 9999998777888765443222111100
Q ss_pred CCCCCCCCCCCCCeeeccCcccccccccCCCCcccCCCccEEEEecCCCCCcCCcCCCCCCCCCEEEEecCcchhhcccc
Q 037953 407 SSSVNNIAFPKLKELEFSGLQEWEDWDFRKEDITIMPQINSLSIYGCHKLKSLPDQLLQSSTLKTLRINRCRVLEEHFKK 486 (625)
Q Consensus 407 ~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~L~~~~~~ 486 (625)
..+..+..+++|+.|+++++.-...++. .++.+++|+.|++++|...+.+|..++++++|++|++++|.....+| .
T Consensus 623 ~~~~~~~~l~~L~~LdLs~N~l~g~ip~---~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip-~ 698 (768)
T 3rgz_A 623 HTSPTFDNNGSMMFLDMSYNMLSGYIPK---EIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIP-Q 698 (768)
T ss_dssp ECCCSCSSSBCCCEEECCSSCCBSCCCG---GGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCC-G
T ss_pred cCchhhhccccccEEECcCCcccccCCH---HHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCC-h
Confidence 0122355678899999998753333332 25589999999999976667899999999999999999998877777 6
Q ss_pred cccccCCCCceEEecC
Q 037953 487 DRSKISHIPDIQIYER 502 (625)
Q Consensus 487 ~~~~l~~l~~l~~~~~ 502 (625)
.+..+..+..+.+..+
T Consensus 699 ~l~~l~~L~~L~ls~N 714 (768)
T 3rgz_A 699 AMSALTMLTEIDLSNN 714 (768)
T ss_dssp GGGGCCCCSEEECCSS
T ss_pred HHhCCCCCCEEECcCC
Confidence 7777888888877654
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=8.3e-29 Score=275.59 Aligned_cols=379 Identities=16% Similarity=0.142 Sum_probs=222.7
Q ss_pred CCCceEEEEEEcCCCCcchh-hhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhh-
Q 037953 70 CPEKLRHLMLVLGYEAPSLV-SIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEI- 147 (625)
Q Consensus 70 ~~~~lr~L~l~~~~~~~~~~-~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~l- 147 (625)
.++++++|++++|.+..+++ .+.++++|++|++++|. +....| ..|+++++|++|+|+ +|.+..+
T Consensus 30 ~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~--l~~i~~---~~~~~l~~L~~L~Ls--------~n~l~~~~ 96 (606)
T 3vq2_A 30 IPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCE--IETIED---KAWHGLHHLSNLILT--------GNPIQSFS 96 (606)
T ss_dssp SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCC--CCEECT---TTTTTCTTCCEEECT--------TCCCCCCC
T ss_pred CCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCc--ccccCH---HHhhchhhcCEeECC--------CCcccccC
Confidence 56889999999999977765 88899999999999975 556667 789999999999999 8887777
Q ss_pred hcccccccccceecC--CCCCCCc-hhhcCCCCCceEeecCCCCCC--ccccccccccccceEEecCccccccc-ccCCC
Q 037953 148 LNGVEKLIHLRYLKL--NLVGDLP-EKCCELLNLQTLELENSSHFK--RFPQGIGKLINLRHLIFTEDLLEYMP-KGIEK 221 (625)
Q Consensus 148 p~~~~~L~~L~~L~L--~~l~~lP-~~i~~L~~L~~L~L~~~~~l~--~lp~~l~~L~~L~~L~l~~~~l~~lp-~~i~~ 221 (625)
|.+|+++++|++|++ |.+..+| ..++++++|++|++++|. +. .+|..++++++|++|+++.|.++.++ ..++.
T Consensus 97 p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 175 (606)
T 3vq2_A 97 PGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNF-IHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQF 175 (606)
T ss_dssp TTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSC-CCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHH
T ss_pred hhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCc-ccceechHhHhhcCCCCEEEccCCcceecChhhhhh
Confidence 788999999999999 4477776 679999999999999998 66 57889999999999999888887764 44666
Q ss_pred ccccc----cCCceEecCCCCcCCCcccChhccccccccccceEEeccCC------------------------------
Q 037953 222 LTSLR----TLSEFVVASGGGRYGSEACKLEGLRHLNHLRGSLKVRGLGN------------------------------ 267 (625)
Q Consensus 222 L~~L~----~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~L~l~~~~~------------------------------ 267 (625)
+++|+ +|++..+.... .+... +.. .+|+ .+.+.+...
T Consensus 176 l~~L~~~l~~L~l~~n~l~~-----~~~~~--~~~-~~L~-~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~ 246 (606)
T 3vq2_A 176 LRENPQVNLSLDMSLNPIDF-----IQDQA--FQG-IKLH-ELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERN 246 (606)
T ss_dssp HHHCTTCCCEEECTTCCCCE-----ECTTT--TTT-CEEE-EEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCC
T ss_pred hhccccccceeeccCCCcce-----eCccc--ccC-ceee-eeeccCCccchhHHHHHhccccccccccccccccccCCc
Confidence 66665 33333222211 11111 111 1233 344433211
Q ss_pred ------------------------CCChhHHHHhccCCCCCCCeEEEEEecccccccCCcccccccchhhHHHHhhcCCC
Q 037953 268 ------------------------VADVDEVKNAHLEKKKNLVRLILRFKDIDKAVKRWPEAISNENAAKHEAICEALWP 323 (625)
Q Consensus 268 ------------------------~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 323 (625)
.+...+..+. +..+++|+.|+++++.+ ..++ .+..
T Consensus 247 l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~-------------------~~l~-~l~~ 305 (606)
T 3vq2_A 247 LEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSI-------------------KYLE-DVPK 305 (606)
T ss_dssp CSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCC-------------------CCCC-CCCT
T ss_pred ccccChHHhhhhhhccHhheeccccccccccccc-cccCCCCCEEEecCccc-------------------hhhh-hccc
Confidence 0111111111 44455555555555431 1122 4555
Q ss_pred CCCCcEEEEeccCCCcccCCchhhcccccccEEEEeCCCCCCCCCCCCCCCCcceeeccccccceee---CccCCCCCCC
Q 037953 324 PPNLESLEIAGFRGRKMMLSTNWMASLNMLKKLRLLNCPTCEIMPPLGQLPSLEILLIKDMTSVERV---GDESLGIANG 400 (625)
Q Consensus 324 ~~~L~~L~L~~~~~~~~~~~p~~l~~l~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~~~~l~~l---~~~~~~~~~~ 400 (625)
+++|+.|++++|....+ |.+ .+++|+.|++++|.....+ .++.+++|++|++++|. ++.+ +..+.....+
T Consensus 306 ~~~L~~L~l~~n~l~~l---p~~--~l~~L~~L~l~~n~~~~~~-~~~~l~~L~~L~ls~n~-l~~~~~~~~~~~~~~~L 378 (606)
T 3vq2_A 306 HFKWQSLSIIRCQLKQF---PTL--DLPFLKSLTLTMNKGSISF-KKVALPSLSYLDLSRNA-LSFSGCCSYSDLGTNSL 378 (606)
T ss_dssp TCCCSEEEEESCCCSSC---CCC--CCSSCCEEEEESCSSCEEC-CCCCCTTCCEEECCSSC-EEEEEECCHHHHCCSCC
T ss_pred cccCCEEEcccccCccc---ccC--CCCccceeeccCCcCccch-hhccCCCCCEEECcCCc-cCCCcchhhhhccCCcc
Confidence 66677777776666555 533 6666666666666444333 34455666666666544 3322 2222233333
Q ss_pred CCCCCCCC-----CCCCCCCCCCCeeeccCcccccccccCCCCcccCCCccEEEEecCCCCCcCCcCCCCCCCCCEEEEe
Q 037953 401 DHGAPSSS-----SVNNIAFPKLKELEFSGLQEWEDWDFRKEDITIMPQINSLSIYGCHKLKSLPDQLLQSSTLKTLRIN 475 (625)
Q Consensus 401 ~~~~~~~~-----~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~ 475 (625)
..+.++.. +..+..+++|+.|+++++.-....+. ..+..+++|+.|++++|......|..+..+++|++|+++
T Consensus 379 ~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~--~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 456 (606)
T 3vq2_A 379 RHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEF--SAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMA 456 (606)
T ss_dssp CEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTT--TTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECT
T ss_pred cEeECCCCccccchhhccCCCCCCeeECCCCccCCccCh--hhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECC
Confidence 33333221 12244555566666555421111110 112345566666666554333344555555566666665
Q ss_pred cCcchhhcccccccccCCCCceEEec
Q 037953 476 RCRVLEEHFKKDRSKISHIPDIQIYE 501 (625)
Q Consensus 476 ~c~~L~~~~~~~~~~l~~l~~l~~~~ 501 (625)
+|..........+..+.++..+.+.+
T Consensus 457 ~n~l~~~~~~~~~~~l~~L~~L~Ls~ 482 (606)
T 3vq2_A 457 GNSFKDNTLSNVFANTTNLTFLDLSK 482 (606)
T ss_dssp TCEEGGGEECSCCTTCTTCCEEECTT
T ss_pred CCcCCCcchHHhhccCCCCCEEECCC
Confidence 55433322213344444444444443
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
Probab=99.96 E-value=5.9e-29 Score=277.33 Aligned_cols=342 Identities=14% Similarity=0.184 Sum_probs=265.9
Q ss_pred ccccCCCCceEEEEEEcCCCCc------------------chhhhc--cCCcceEEEeecccCCccccCchhhHHHhcCC
Q 037953 65 LLINTCPEKLRHLMLVLGYEAP------------------SLVSIF--NAIKLRSLILFYWIPNLDAMLPVLKGIFDQLT 124 (625)
Q Consensus 65 ~~~~~~~~~lr~L~l~~~~~~~------------------~~~~~~--~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~ 124 (625)
|.......+++.|++++|.+.. +|+.+. ++++|++|++++|. +.+.+| ..|++++
T Consensus 199 p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~--l~~~~p---~~l~~l~ 273 (636)
T 4eco_A 199 SKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCP--NLTKLP---TFLKALP 273 (636)
T ss_dssp CGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCT--TCSSCC---TTTTTCS
T ss_pred CHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCc--CCccCh---HHHhcCC
Confidence 3334457799999999999977 999988 99999999999975 567788 8899999
Q ss_pred ceeEEEeecCCCccccccc-hh--hhhcccccc------cccceecC--CCCCCCch--hhcCCCCCceEeecCCCCCC-
Q 037953 125 CLRALRIEGTDNWELEEDQ-TN--EILNGVEKL------IHLRYLKL--NLVGDLPE--KCCELLNLQTLELENSSHFK- 190 (625)
Q Consensus 125 ~Lr~L~Ls~c~~~~~~~~~-l~--~lp~~~~~L------~~L~~L~L--~~l~~lP~--~i~~L~~L~~L~L~~~~~l~- 190 (625)
+|++|+++ +|. +. .+|..++++ ++|++|++ |.+..+|. .++++++|++|++++|. +.
T Consensus 274 ~L~~L~Ls--------~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~-l~g 344 (636)
T 4eco_A 274 EMQLINVA--------CNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQ-LEG 344 (636)
T ss_dssp SCCEEECT--------TCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCC-CEE
T ss_pred CCCEEECc--------CCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCc-Ccc
Confidence 99999999 886 65 589888887 99999999 44889998 89999999999999999 77
Q ss_pred ccccccccccccceEEecCcccccccccCCCccc-cccCCceEecCCCCcCCCcccChhccccccccccceEEeccCCCC
Q 037953 191 RFPQGIGKLINLRHLIFTEDLLEYMPKGIEKLTS-LRTLSEFVVASGGGRYGSEACKLEGLRHLNHLRGSLKVRGLGNVA 269 (625)
Q Consensus 191 ~lp~~l~~L~~L~~L~l~~~~l~~lp~~i~~L~~-L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~L~l~~~~~~~ 269 (625)
.+| .++++++|++|++++|.+..+|..++++++ |++|++..+.... ++..+..+ .+.+|+ .|.+++.
T Consensus 345 ~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~-----lp~~~~~~-~l~~L~-~L~Ls~N---- 412 (636)
T 4eco_A 345 KLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKY-----IPNIFDAK-SVSVMS-AIDFSYN---- 412 (636)
T ss_dssp ECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSS-----CCSCCCTT-CSSCEE-EEECCSS----
T ss_pred chh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCcc-----cchhhhhc-ccCccC-EEECcCC----
Confidence 999 999999999999999999999999999999 9999887665443 23322222 122455 6777663
Q ss_pred ChhHHHHhccC-------CCCCCCeEEEEEecccccccCCcccccccchhhHHHHhhc-CCCCCCCcEEEEeccCCCccc
Q 037953 270 DVDEVKNAHLE-------KKKNLVRLILRFKDIDKAVKRWPEAISNENAAKHEAICEA-LWPPPNLESLEIAGFRGRKMM 341 (625)
Q Consensus 270 ~~~~~~~~~l~-------~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~L~~L~L~~~~~~~~~ 341 (625)
.+.+..+..+. .+.+|+.|++++|.++ .++.. +..+++|+.|++++|....+
T Consensus 413 ~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-------------------~lp~~~~~~l~~L~~L~Ls~N~l~~i- 472 (636)
T 4eco_A 413 EIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-------------------KFPKELFSTGSPLSSINLMGNMLTEI- 472 (636)
T ss_dssp CTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-------------------SCCTHHHHTTCCCSEEECCSSCCSBC-
T ss_pred cCCCcchhhhcccccccccCCCCCEEECcCCccC-------------------cCCHHHHccCCCCCEEECCCCCCCCc-
Confidence 33333444455 6779999999988532 12222 33578999999999988876
Q ss_pred CCchhhcc--------cccccEEEEeCCCCCCCCCC-CC--CCCCcceeeccccccceeeCccCCCCCCCCCCCCCCCCC
Q 037953 342 LSTNWMAS--------LNMLKKLRLLNCPTCEIMPP-LG--QLPSLEILLIKDMTSVERVGDESLGIANGDHGAPSSSSV 410 (625)
Q Consensus 342 ~~p~~l~~--------l~~L~~L~L~~c~~l~~l~~-l~--~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 410 (625)
|..... +++|+.|++++|. +..+|. +. .+++|+.|+|++|. ++.+|..
T Consensus 473 --~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~~~l~~L~~L~Ls~N~-l~~ip~~----------------- 531 (636)
T 4eco_A 473 --PKNSLKDENENFKNTYLLTSIDLRFNK-LTKLSDDFRATTLPYLVGIDLSYNS-FSKFPTQ----------------- 531 (636)
T ss_dssp --CSSSSEETTEECTTGGGCCEEECCSSC-CCBCCGGGSTTTCTTCCEEECCSSC-CSSCCCG-----------------
T ss_pred --CHHHhccccccccccCCccEEECcCCc-CCccChhhhhccCCCcCEEECCCCC-CCCcChh-----------------
Confidence 665432 2399999999965 457774 54 89999999999976 5556654
Q ss_pred CCCCCCCCCeeeccCccc------ccccccCCCCcccCCCccEEEEecCCCCCcCCcCCCCCCCCCEEEEecCcch
Q 037953 411 NNIAFPKLKELEFSGLQE------WEDWDFRKEDITIMPQINSLSIYGCHKLKSLPDQLLQSSTLKTLRINRCRVL 480 (625)
Q Consensus 411 ~~~~l~~L~~L~L~~~~~------l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~L 480 (625)
+..+++|+.|+++++.. ...++ ..++.+++|++|++++| .++.+|..+. ++|++|++++|+..
T Consensus 532 -~~~l~~L~~L~Ls~N~~ls~N~l~~~~p---~~l~~l~~L~~L~Ls~N-~l~~ip~~~~--~~L~~L~Ls~N~l~ 600 (636)
T 4eco_A 532 -PLNSSTLKGFGIRNQRDAQGNRTLREWP---EGITLCPSLTQLQIGSN-DIRKVNEKIT--PNISVLDIKDNPNI 600 (636)
T ss_dssp -GGGCSSCCEEECCSCBCTTCCBCCCCCC---TTGGGCSSCCEEECCSS-CCCBCCSCCC--TTCCEEECCSCTTC
T ss_pred -hhcCCCCCEEECCCCcccccCcccccCh---HHHhcCCCCCEEECCCC-cCCccCHhHh--CcCCEEECcCCCCc
Confidence 56789999999976431 22222 23558999999999996 5699998865 89999999999753
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.8e-29 Score=285.07 Aligned_cols=198 Identities=14% Similarity=0.100 Sum_probs=159.6
Q ss_pred CceEEEEEEcCCC-CcchhhhccCCcceEEEe-ecccC------------------------------------------
Q 037953 72 EKLRHLMLVLGYE-APSLVSIFNAIKLRSLIL-FYWIP------------------------------------------ 107 (625)
Q Consensus 72 ~~lr~L~l~~~~~-~~~~~~~~~l~~Lr~L~L-~~~~~------------------------------------------ 107 (625)
.+++.|+|.++.+ +.+|+++.++++|++|+| ++|..
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~ 402 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence 6899999999998 688999999999999999 55420
Q ss_pred ---------------------------------CccccCchhhHHHhcCCceeEEEeecCCCccccccchhh--------
Q 037953 108 ---------------------------------NLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNE-------- 146 (625)
Q Consensus 108 ---------------------------------~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~-------- 146 (625)
.+.+ +| ..|+++++|++|+|+ +|.+..
T Consensus 403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP---~~l~~L~~L~~L~Ls--------~N~Lsg~~i~~~~~ 470 (876)
T 4ecn_A 403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-IS---KAIQRLTKLQIIYFA--------NSPFTYDNIAVDWE 470 (876)
T ss_dssp HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-EC---GGGGGCTTCCEEEEE--------SCCCCGGGBSSSCS
T ss_pred HHHHHhhhCccccccccccccchhhceeccccCcccc-hh---HHHhcCCCCCEEECc--------CCcCCCCccccccc
Confidence 0111 67 789999999999999 787666
Q ss_pred ----------hhcccc--cccccceecC--CC-CCCCchhhcCCCCCceEeecCCCCCC--cccccccccc-------cc
Q 037953 147 ----------ILNGVE--KLIHLRYLKL--NL-VGDLPEKCCELLNLQTLELENSSHFK--RFPQGIGKLI-------NL 202 (625)
Q Consensus 147 ----------lp~~~~--~L~~L~~L~L--~~-l~~lP~~i~~L~~L~~L~L~~~~~l~--~lp~~l~~L~-------~L 202 (625)
+|..++ ++++|++|+| |. .+.+|..++++++|++|+|++|..+. .+|..+++++ +|
T Consensus 471 ~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L 550 (876)
T 4ecn_A 471 DANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKI 550 (876)
T ss_dssp CTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTC
T ss_pred ccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCc
Confidence 999988 9999999999 66 88999999999999999999997354 5898888877 99
Q ss_pred ceEEecCcccccccc--cCCCccccccCCceEecCCCCcCCCcccChhccccccccccceEEeccCCCCChhHHHHhccC
Q 037953 203 RHLIFTEDLLEYMPK--GIEKLTSLRTLSEFVVASGGGRYGSEACKLEGLRHLNHLRGSLKVRGLGNVADVDEVKNAHLE 280 (625)
Q Consensus 203 ~~L~l~~~~l~~lp~--~i~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~ 280 (625)
++|++++|.+..+|. .++++++|+.|++..+.... ++ .+.++++|+ .|.+++..- . .++..+.
T Consensus 551 ~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~-----lp----~~~~L~~L~-~L~Ls~N~l----~-~lp~~l~ 615 (876)
T 4ecn_A 551 QIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRH-----LE----AFGTNVKLT-DLKLDYNQI----E-EIPEDFC 615 (876)
T ss_dssp CEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCB-----CC----CCCTTSEES-EEECCSSCC----S-CCCTTSC
T ss_pred cEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCccc-----ch----hhcCCCcce-EEECcCCcc----c-cchHHHh
Confidence 999999999999998 89999999999876655432 22 556666666 777766432 2 3445577
Q ss_pred CCCC-CCeEEEEEeccc
Q 037953 281 KKKN-LVRLILRFKDID 296 (625)
Q Consensus 281 ~l~~-L~~L~l~~~~~~ 296 (625)
.+++ |+.|++++|.++
T Consensus 616 ~l~~~L~~L~Ls~N~L~ 632 (876)
T 4ecn_A 616 AFTDQVEGLGFSHNKLK 632 (876)
T ss_dssp EECTTCCEEECCSSCCC
T ss_pred hccccCCEEECcCCCCC
Confidence 8888 999999988643
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.3e-28 Score=274.02 Aligned_cols=405 Identities=12% Similarity=0.063 Sum_probs=264.6
Q ss_pred CCCceEEEEEEcCCCCcc-hhhhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhh-
Q 037953 70 CPEKLRHLMLVLGYEAPS-LVSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEI- 147 (625)
Q Consensus 70 ~~~~lr~L~l~~~~~~~~-~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~l- 147 (625)
.++.+++|++++|.+..+ |..+.++++|++|++++|. +....| ..|+++++|++|+|+ +|.+..+
T Consensus 31 l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~--i~~~~~---~~~~~l~~L~~L~Ls--------~n~l~~~~ 97 (606)
T 3t6q_A 31 LPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQ--IYWIHE---DTFQSQHRLDTLVLT--------ANPLIFMA 97 (606)
T ss_dssp SCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCC--CCEECT---TTTTTCTTCCEEECT--------TCCCSEEC
T ss_pred CCCcCcEEEccCCccCcCChhHhccCccceEEECCCCc--cceeCh---hhccCccccCeeeCC--------CCcccccC
Confidence 567899999999999777 5688999999999999975 456667 889999999999999 8887665
Q ss_pred hcccccccccceecC--CCCCCC-chhhcCCCCCceEeecCCCCCCccc-cccccccccceEEecCccccccc-ccCCCc
Q 037953 148 LNGVEKLIHLRYLKL--NLVGDL-PEKCCELLNLQTLELENSSHFKRFP-QGIGKLINLRHLIFTEDLLEYMP-KGIEKL 222 (625)
Q Consensus 148 p~~~~~L~~L~~L~L--~~l~~l-P~~i~~L~~L~~L~L~~~~~l~~lp-~~l~~L~~L~~L~l~~~~l~~lp-~~i~~L 222 (625)
|..|+++++|++|++ |.+..+ |..++++++|++|++++|. +..++ +.+..+++|++|+++.|.++.++ ..++.+
T Consensus 98 ~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 176 (606)
T 3t6q_A 98 ETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNH-ISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSL 176 (606)
T ss_dssp TTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSC-CCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTT
T ss_pred hhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCc-ccccCcccccCCcccCEEEcccCcccccChhhhhhh
Confidence 678999999999999 447777 5779999999999999998 77653 34455999999999888887774 457777
Q ss_pred cccc--cCCceEecCCCCcCCCcccChh--------------------c--------------------------ccccc
Q 037953 223 TSLR--TLSEFVVASGGGRYGSEACKLE--------------------G--------------------------LRHLN 254 (625)
Q Consensus 223 ~~L~--~L~~~~~~~~~~~~~~~~~~l~--------------------~--------------------------l~~L~ 254 (625)
++|+ .|++..+...... +..+. . +..+.
T Consensus 177 ~~L~~l~L~l~~n~l~~~~----~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~ 252 (606)
T 3t6q_A 177 QQATNLSLNLNGNDIAGIE----PGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLC 252 (606)
T ss_dssp TTCCSEEEECTTCCCCEEC----TTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGG
T ss_pred cccceeEEecCCCccCccC----hhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhh
Confidence 7777 4444333222100 00000 0 00000
Q ss_pred --ccccceEEeccCCCCChhHHHHhccCCCCCCCeEEEEEecccccccCCcccccccchhhHHHHhhcCCCCCCCcEEEE
Q 037953 255 --HLRGSLKVRGLGNVADVDEVKNAHLEKKKNLVRLILRFKDIDKAVKRWPEAISNENAAKHEAICEALWPPPNLESLEI 332 (625)
Q Consensus 255 --~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L 332 (625)
.|+ .+.+.+. .+.+..+..+..+++|+.|++++|.+ ..++..+..+++|++|++
T Consensus 253 ~~~L~-~L~l~~n----~l~~~~~~~~~~l~~L~~L~l~~n~l-------------------~~lp~~l~~l~~L~~L~l 308 (606)
T 3t6q_A 253 EMSVE-SINLQKH----YFFNISSNTFHCFSGLQELDLTATHL-------------------SELPSGLVGLSTLKKLVL 308 (606)
T ss_dssp GSEEE-EEECTTC----CCSSCCTTTTTTCTTCSEEECTTSCC-------------------SCCCSSCCSCTTCCEEEC
T ss_pred cCcee-EEEeecC----ccCccCHHHhccccCCCEEeccCCcc-------------------CCCChhhcccccCCEEEC
Confidence 122 2333221 11122233467778888888887742 345666777888999999
Q ss_pred eccCCCcccCCchhhcccccccEEEEeCCCCCCCCCC--CCCCCCcceeeccccccceee---CccCCCCCCCCCCCCCC
Q 037953 333 AGFRGRKMMLSTNWMASLNMLKKLRLLNCPTCEIMPP--LGQLPSLEILLIKDMTSVERV---GDESLGIANGDHGAPSS 407 (625)
Q Consensus 333 ~~~~~~~~~~~p~~l~~l~~L~~L~L~~c~~l~~l~~--l~~l~~L~~L~L~~~~~l~~l---~~~~~~~~~~~~~~~~~ 407 (625)
++|...... |..+..+++|++|++++|.....++. ++.+++|++|++++|. +..+ +..+.....+..+.++.
T Consensus 309 ~~n~l~~~~--~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l~~L~~L~l~~ 385 (606)
T 3t6q_A 309 SANKFENLC--QISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDD-IETSDCCNLQLRNLSHLQSLNLSY 385 (606)
T ss_dssp TTCCCSBGG--GGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSC-CCEEEESTTTTTTCTTCCEEECCS
T ss_pred ccCCcCcCc--hhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCc-cccccCcchhcccCCCCCEEECCC
Confidence 888776642 56777888888888888766656653 7788888888888876 4433 34444444554444443
Q ss_pred C------CCCCCCCCCCCeeeccCcccccccccCCCCcccCCCccEEEEecCCCCCcCCcCCCCCCCCCEEEEecCcchh
Q 037953 408 S------SVNNIAFPKLKELEFSGLQEWEDWDFRKEDITIMPQINSLSIYGCHKLKSLPDQLLQSSTLKTLRINRCRVLE 481 (625)
Q Consensus 408 ~------~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~L~ 481 (625)
. +..+..+++|+.|+++++.- ..... ...+..+++|+.|++++|......|..+..+++|++|++++|+.-.
T Consensus 386 n~l~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 463 (606)
T 3t6q_A 386 NEPLSLKTEAFKECPQLELLDLAFTRL-KVKDA-QSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPK 463 (606)
T ss_dssp CSCEEECTTTTTTCTTCSEEECTTCCE-ECCTT-CCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGG
T ss_pred CcCCcCCHHHhcCCccCCeEECCCCcC-CCccc-chhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCc
Confidence 2 12345677777887776532 21111 1113467888888888864434456667778888888888886533
Q ss_pred hcc-c-ccccccCCCCceEEecCCCCccchhhhhccCccccccc
Q 037953 482 EHF-K-KDRSKISHIPDIQIYERGPGFFTLMARLISDCLSMMNM 523 (625)
Q Consensus 482 ~~~-~-~~~~~l~~l~~l~~~~~~~~~~~l~~~~i~~c~~L~~l 523 (625)
... . ..+..+.++..+.+..+... ......+..+++|+.+
T Consensus 464 ~~~~~~~~~~~l~~L~~L~Ls~n~l~--~~~~~~~~~l~~L~~L 505 (606)
T 3t6q_A 464 GNIQKTNSLQTLGRLEILVLSFCDLS--SIDQHAFTSLKMMNHV 505 (606)
T ss_dssp GEECSSCGGGGCTTCCEEECTTSCCC--EECTTTTTTCTTCCEE
T ss_pred cccccchhhccCCCccEEECCCCccC--ccChhhhccccCCCEE
Confidence 211 1 23455566666666554332 2222234445555544
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.8e-28 Score=270.83 Aligned_cols=432 Identities=15% Similarity=0.121 Sum_probs=266.4
Q ss_pred CCCceEEEEEEcCCCCcch-hhhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhhh
Q 037953 70 CPEKLRHLMLVLGYEAPSL-VSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEIL 148 (625)
Q Consensus 70 ~~~~lr~L~l~~~~~~~~~-~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp 148 (625)
.++++++|++++|.+..++ ..+.++++|++|++++|. +....| ..|+++++|++|+|+ +|.+..+|
T Consensus 26 l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~--i~~i~~---~~~~~l~~L~~L~L~--------~n~l~~~~ 92 (570)
T 2z63_A 26 LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE--IQTIED---GAYQSLSHLSTLILT--------GNPIQSLA 92 (570)
T ss_dssp SCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCC--CCEECT---TTTTTCTTCCEEECT--------TCCCCEEC
T ss_pred ccccccEEEccCCccCccChhHhhCCCCceEEECCCCc--CCccCc---ccccCchhCCEEeCc--------CCcCCccC
Confidence 5678999999999997765 478999999999999975 455666 789999999999999 88887775
Q ss_pred -cccccccccceecC-CC-CCCCch-hhcCCCCCceEeecCCCCCCc--cccccccccccceEEecCccccccc-ccCCC
Q 037953 149 -NGVEKLIHLRYLKL-NL-VGDLPE-KCCELLNLQTLELENSSHFKR--FPQGIGKLINLRHLIFTEDLLEYMP-KGIEK 221 (625)
Q Consensus 149 -~~~~~L~~L~~L~L-~~-l~~lP~-~i~~L~~L~~L~L~~~~~l~~--lp~~l~~L~~L~~L~l~~~~l~~lp-~~i~~ 221 (625)
..|+++++|++|++ .+ +..+|. .++++++|++|++++|. +.. +|..++++++|++|+++.|.++.++ ..++.
T Consensus 93 ~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 171 (570)
T 2z63_A 93 LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRV 171 (570)
T ss_dssp TTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHH
T ss_pred HhhhcCccccccccccccccccCCCccccccccccEEecCCCc-cceecChhhhcccCCCCEEeCcCCccceecHHHccc
Confidence 67999999999999 44 888875 69999999999999998 664 7889999999999999888887765 45677
Q ss_pred cccc----ccCCceEecCCCCcCCCcccChhccccccccccceEEeccCC---------------------------CC-
Q 037953 222 LTSL----RTLSEFVVASGGGRYGSEACKLEGLRHLNHLRGSLKVRGLGN---------------------------VA- 269 (625)
Q Consensus 222 L~~L----~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~L~l~~~~~---------------------------~~- 269 (625)
+++| +.|++..+.... .+ .+.+..+ .|+ .+.+.+... ..
T Consensus 172 l~~L~~~~~~L~l~~n~l~~-----~~--~~~~~~~-~L~-~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~ 242 (570)
T 2z63_A 172 LHQMPLLNLSLDLSLNPMNF-----IQ--PGAFKEI-RLH-KLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGN 242 (570)
T ss_dssp HHTCTTCCCEEECTTCCCCE-----EC--TTTTTTC-EEE-EEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSS
T ss_pred hhccchhhhhcccCCCCcee-----cC--HHHhccC-cce-eEecccccccccchhhhhcCccccceeeeccccccCchh
Confidence 7777 344433222211 00 0111111 122 222222100 00
Q ss_pred --------------------------ChhHHHHhccCCCCCCCeEEEEEecccccccCCcccccccchhhHHHHhhcCCC
Q 037953 270 --------------------------DVDEVKNAHLEKKKNLVRLILRFKDIDKAVKRWPEAISNENAAKHEAICEALWP 323 (625)
Q Consensus 270 --------------------------~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 323 (625)
...+..+..+..+++|+.|+++++.+ ..++..+..
T Consensus 243 l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l-------------------~~l~~~~~~ 303 (570)
T 2z63_A 243 LEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTI-------------------ERVKDFSYN 303 (570)
T ss_dssp CEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEE-------------------CSCCBCCSC
T ss_pred hhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccc-------------------hhhhhhhcc
Confidence 01111223455566777777776632 234445555
Q ss_pred CCCCcEEEEeccCCCcccCCchhhcccccccEEEEeCCCCCCCCCCCCCCCCcceeeccccccceee---CccCCCCCCC
Q 037953 324 PPNLESLEIAGFRGRKMMLSTNWMASLNMLKKLRLLNCPTCEIMPPLGQLPSLEILLIKDMTSVERV---GDESLGIANG 400 (625)
Q Consensus 324 ~~~L~~L~L~~~~~~~~~~~p~~l~~l~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~~~~l~~l---~~~~~~~~~~ 400 (625)
+ +|+.|++++|....+ |. ..+++|+.|++++|......+. ..+++|+.|++++|. +..+ +..+.....+
T Consensus 304 ~-~L~~L~l~~n~~~~l---~~--~~l~~L~~L~l~~n~~~~~~~~-~~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~~L 375 (570)
T 2z63_A 304 F-GWQHLELVNCKFGQF---PT--LKLKSLKRLTFTSNKGGNAFSE-VDLPSLEFLDLSRNG-LSFKGCCSQSDFGTTSL 375 (570)
T ss_dssp C-CCSEEEEESCBCSSC---CB--CBCSSCCEEEEESCBSCCBCCC-CBCTTCCEEECCSSC-CBEEEEEEHHHHTCSCC
T ss_pred C-CccEEeeccCccccc---Cc--ccccccCEEeCcCCcccccccc-ccCCCCCEEeCcCCc-cCccccccccccccCcc
Confidence 5 777777777766655 54 3567777777777654443333 567777777777765 3333 2333333444
Q ss_pred CCCCCCCCC-----CCCCCCCCCCeeeccCcccccccccCCCCcccCCCccEEEEecCCCCCcCCcCCCCCCCCCEEEEe
Q 037953 401 DHGAPSSSS-----VNNIAFPKLKELEFSGLQEWEDWDFRKEDITIMPQINSLSIYGCHKLKSLPDQLLQSSTLKTLRIN 475 (625)
Q Consensus 401 ~~~~~~~~~-----~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~ 475 (625)
..+.++... ..+..+++|+.|+++++. +..... ...+..+++|++|++++|......|..+..+++|++|+++
T Consensus 376 ~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~-l~~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 453 (570)
T 2z63_A 376 KYLDLSFNGVITMSSNFLGLEQLEHLDFQHSN-LKQMSE-FSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMA 453 (570)
T ss_dssp CEEECCSCSEEEEEEEEETCTTCCEEECTTSE-EESCTT-SCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECT
T ss_pred CEEECCCCccccccccccccCCCCEEEccCCc-cccccc-hhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECc
Confidence 444443321 114566777777777653 222211 0113467888888888875445566677778888888888
Q ss_pred cCcch-hhcccccccccCCCCceEEecCCCCccchhhhhccCccccccccchhhhcCCCCC---ccccceeeeccccccc
Q 037953 476 RCRVL-EEHFKKDRSKISHIPDIQIYERGPGFFTLMARLISDCLSMMNMNPILSYSNRLPL---ASSHHLMARGEGIKNL 551 (625)
Q Consensus 476 ~c~~L-~~~~~~~~~~l~~l~~l~~~~~~~~~~~l~~~~i~~c~~L~~l~~~~~~~~~l~~---~~~~~l~~~~~~~~~~ 551 (625)
+|... ..+| ..+..+.++..+.+..+... ......+..|++|+.+...-.....++. ..+..+....-+.+.+
T Consensus 454 ~n~l~~~~~p-~~~~~l~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~ 530 (570)
T 2z63_A 454 GNSFQENFLP-DIFTELRNLTFLDLSQCQLE--QLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPW 530 (570)
T ss_dssp TCEEGGGEEC-SCCTTCTTCCEEECTTSCCC--EECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred CCcCccccch-hhhhcccCCCEEECCCCccc--cCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcc
Confidence 88754 2344 55566667777766655332 2223334556666555432222222222 2223444444455555
Q ss_pred cCCCC
Q 037953 552 SGHLP 556 (625)
Q Consensus 552 ~~~~~ 556 (625)
++.+|
T Consensus 531 ~~~~~ 535 (570)
T 2z63_A 531 DCSCP 535 (570)
T ss_dssp CCCTT
T ss_pred cCCCc
Confidence 55543
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-28 Score=280.08 Aligned_cols=346 Identities=13% Similarity=0.122 Sum_probs=226.7
Q ss_pred cccCCCCceEEEEEEcCCCCc------------------chhhhc--cCCcceEEEeecccCCccccCchhhHHHhcCCc
Q 037953 66 LINTCPEKLRHLMLVLGYEAP------------------SLVSIF--NAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTC 125 (625)
Q Consensus 66 ~~~~~~~~lr~L~l~~~~~~~------------------~~~~~~--~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~ 125 (625)
......++++.|++++|.+.. +|+.+. ++++|++|++++|. +.+.+| ..|+++++
T Consensus 442 ~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~--l~~~iP---~~l~~L~~ 516 (876)
T 4ecn_A 442 KAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCP--NMTQLP---DFLYDLPE 516 (876)
T ss_dssp GGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCT--TCCSCC---GGGGGCSS
T ss_pred HHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCC--CCccCh---HHHhCCCC
Confidence 333446788888888888865 787766 88888888888864 466777 78888888
Q ss_pred eeEEEeecCCCccccccc-hh--hhhccccccc-------ccceecC-C-CCCCCch--hhcCCCCCceEeecCCCCCCc
Q 037953 126 LRALRIEGTDNWELEEDQ-TN--EILNGVEKLI-------HLRYLKL-N-LVGDLPE--KCCELLNLQTLELENSSHFKR 191 (625)
Q Consensus 126 Lr~L~Ls~c~~~~~~~~~-l~--~lp~~~~~L~-------~L~~L~L-~-~l~~lP~--~i~~L~~L~~L~L~~~~~l~~ 191 (625)
|++|+|+ +|. +. .+|..++++. +|++|+| + .+..+|. .++++++|++|+|++|. +..
T Consensus 517 L~~L~Ls--------~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~-l~~ 587 (876)
T 4ecn_A 517 LQSLNIA--------CNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNK-VRH 587 (876)
T ss_dssp CCEEECT--------TCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSC-CCB
T ss_pred CCEEECc--------CCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCC-ccc
Confidence 8888888 776 55 4777777666 8888888 4 4778888 78888888888888888 778
Q ss_pred cccccccccccceEEecCcccccccccCCCccc-cccCCceEecCCCCcCCCcccChhccccccccccceEEeccCCCCC
Q 037953 192 FPQGIGKLINLRHLIFTEDLLEYMPKGIEKLTS-LRTLSEFVVASGGGRYGSEACKLEGLRHLNHLRGSLKVRGLGNVAD 270 (625)
Q Consensus 192 lp~~l~~L~~L~~L~l~~~~l~~lp~~i~~L~~-L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~L~l~~~~~~~~ 270 (625)
+| .++++++|++|++++|.+..+|..+.++++ |+.|++..+.... ++..+..+. .++|+ .|.++++.-...
T Consensus 588 lp-~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~-----lp~~~~~~~-~~~L~-~L~Ls~N~l~g~ 659 (876)
T 4ecn_A 588 LE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKY-----IPNIFNAKS-VYVMG-SVDFSYNKIGSE 659 (876)
T ss_dssp CC-CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCS-----CCSCCCTTC-SSCEE-EEECCSSCTTTT
T ss_pred ch-hhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCCc-----Cchhhhccc-cCCCC-EEECcCCcCCCc
Confidence 88 788888888888888888888888888887 8888776655433 222222221 11244 555554321110
Q ss_pred hhHHHHhccC--CCCCCCeEEEEEecccccccCCcccccccchhhHHHHhhcC-CCCCCCcEEEEeccCCCcccCCchhh
Q 037953 271 VDEVKNAHLE--KKKNLVRLILRFKDIDKAVKRWPEAISNENAAKHEAICEAL-WPPPNLESLEIAGFRGRKMMLSTNWM 347 (625)
Q Consensus 271 ~~~~~~~~l~--~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~L~~L~L~~~~~~~~~~~p~~l 347 (625)
. ..++..+. .+.+|+.|++++|.++ .++..+ ..+++|+.|++++|....+ |.++
T Consensus 660 i-p~l~~~l~~~~~~~L~~L~Ls~N~L~-------------------~lp~~~~~~l~~L~~L~Ls~N~L~~i---p~~~ 716 (876)
T 4ecn_A 660 G-RNISCSMDDYKGINASTVTLSYNEIQ-------------------KFPTELFATGSPISTIILSNNLMTSI---PENS 716 (876)
T ss_dssp S-SSCSSCTTTCCCCCEEEEECCSSCCC-------------------SCCHHHHHTTCCCSEEECCSCCCSCC---CTTS
T ss_pred c-ccchhhhccccCCCcCEEEccCCcCC-------------------ccCHHHHccCCCCCEEECCCCcCCcc---ChHH
Confidence 0 00011122 2347777777776421 122222 2567788888887776655 6554
Q ss_pred cc--------cccccEEEEeCCCCCCCCCC-CC--CCCCcceeeccccccceeeCccCCCCCCCCCCCCCCCCCCCCCCC
Q 037953 348 AS--------LNMLKKLRLLNCPTCEIMPP-LG--QLPSLEILLIKDMTSVERVGDESLGIANGDHGAPSSSSVNNIAFP 416 (625)
Q Consensus 348 ~~--------l~~L~~L~L~~c~~l~~l~~-l~--~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~ 416 (625)
.. +++|+.|+|++|. +..+|. +. .+++|+.|+|++|. +..+|.. +..++
T Consensus 717 ~~~~~~~l~nl~~L~~L~Ls~N~-L~~lp~~l~~~~l~~L~~L~Ls~N~-L~~lp~~------------------l~~L~ 776 (876)
T 4ecn_A 717 LKPKDGNYKNTYLLTTIDLRFNK-LTSLSDDFRATTLPYLSNMDVSYNC-FSSFPTQ------------------PLNSS 776 (876)
T ss_dssp SSCTTSCCTTGGGCCEEECCSSC-CCCCCGGGSTTTCTTCCEEECCSSC-CSSCCCG------------------GGGCT
T ss_pred hccccccccccCCccEEECCCCC-CccchHHhhhccCCCcCEEEeCCCC-CCccchh------------------hhcCC
Confidence 32 3378888887753 446663 44 77888888887765 4445543 45677
Q ss_pred CCCeeeccCcccccc---cccCCCCcccCCCccEEEEecCCCCCcCCcCCCCCCCCCEEEEecCcc
Q 037953 417 KLKELEFSGLQEWED---WDFRKEDITIMPQINSLSIYGCHKLKSLPDQLLQSSTLKTLRINRCRV 479 (625)
Q Consensus 417 ~L~~L~L~~~~~l~~---~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~ 479 (625)
+|+.|++++++.+.. ....+..+..+++|+.|++++| .++.+|..+. ++|+.|++++|+.
T Consensus 777 ~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N-~L~~Ip~~l~--~~L~~LdLs~N~l 839 (876)
T 4ecn_A 777 QLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSN-DIRKVDEKLT--PQLYILDIADNPN 839 (876)
T ss_dssp TCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSS-CCCBCCSCCC--SSSCEEECCSCTT
T ss_pred CCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCC-CCCccCHhhc--CCCCEEECCCCCC
Confidence 888888876431110 0111222446788888888885 4577887754 6888888888864
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.8e-28 Score=272.88 Aligned_cols=381 Identities=16% Similarity=0.089 Sum_probs=220.0
Q ss_pred CCCCceEEEEEEcCCCCcc-hhhhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhh
Q 037953 69 TCPEKLRHLMLVLGYEAPS-LVSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEI 147 (625)
Q Consensus 69 ~~~~~lr~L~l~~~~~~~~-~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~l 147 (625)
...+++++|++++|.+..+ |..+.++++|++|++++|. +....| ..|+++++|++|+|+ +|.+..+
T Consensus 53 ~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~--l~~~~p---~~~~~l~~L~~L~L~--------~n~l~~~ 119 (606)
T 3vq2_A 53 SNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP--IQSFSP---GSFSGLTSLENLVAV--------ETKLASL 119 (606)
T ss_dssp TTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC--CCCCCT---TSSTTCTTCCEEECT--------TSCCCCS
T ss_pred cCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCc--ccccCh---hhcCCcccCCEEEcc--------CCccccc
Confidence 3467899999999999777 5578999999999999975 556667 889999999999999 8888777
Q ss_pred h-cccccccccceecC--CCCC--CCchhhcCCCCCceEeecCCCCCCccc-cccccccccc----eEEecCcccccccc
Q 037953 148 L-NGVEKLIHLRYLKL--NLVG--DLPEKCCELLNLQTLELENSSHFKRFP-QGIGKLINLR----HLIFTEDLLEYMPK 217 (625)
Q Consensus 148 p-~~~~~L~~L~~L~L--~~l~--~lP~~i~~L~~L~~L~L~~~~~l~~lp-~~l~~L~~L~----~L~l~~~~l~~lp~ 217 (625)
| ..++++++|++|++ |.+. .+|..++++++|++|++++|. +..++ ..++.+++|+ +|+++.|.++.+|.
T Consensus 120 ~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~ 198 (606)
T 3vq2_A 120 ESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNY-IQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQD 198 (606)
T ss_dssp SSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSC-CCEECTTTTHHHHHCTTCCCEEECTTCCCCEECT
T ss_pred cccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCc-ceecChhhhhhhhccccccceeeccCCCcceeCc
Confidence 6 67999999999999 4455 589999999999999999998 66654 4466555544 56665555554443
Q ss_pred cC------------------------------------------------------------------------------
Q 037953 218 GI------------------------------------------------------------------------------ 219 (625)
Q Consensus 218 ~i------------------------------------------------------------------------------ 219 (625)
..
T Consensus 199 ~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~ 278 (606)
T 3vq2_A 199 QAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDI 278 (606)
T ss_dssp TTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGG
T ss_pred ccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccc
Confidence 32
Q ss_pred ---CCccccccCCceEecCCCCcCCCcccChhccccccccccceEEeccCCCCChhHHHHhccCCCCCCCeEEEEEeccc
Q 037953 220 ---EKLTSLRTLSEFVVASGGGRYGSEACKLEGLRHLNHLRGSLKVRGLGNVADVDEVKNAHLEKKKNLVRLILRFKDID 296 (625)
Q Consensus 220 ---~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 296 (625)
..+++|+.|++..+... .+..+..+++|+ .|.+.++.- ..+ + .+ .+++|+.|++++|...
T Consensus 279 ~~~~~l~~L~~L~l~~~~~~---------~l~~l~~~~~L~-~L~l~~n~l-~~l----p-~~-~l~~L~~L~l~~n~~~ 341 (606)
T 3vq2_A 279 VKFHCLANVSAMSLAGVSIK---------YLEDVPKHFKWQ-SLSIIRCQL-KQF----P-TL-DLPFLKSLTLTMNKGS 341 (606)
T ss_dssp GSCGGGTTCSEEEEESCCCC---------CCCCCCTTCCCS-EEEEESCCC-SSC----C-CC-CCSSCCEEEEESCSSC
T ss_pred cccccCCCCCEEEecCccch---------hhhhccccccCC-EEEcccccC-ccc----c-cC-CCCccceeeccCCcCc
Confidence 22233333333222221 222555566666 777776543 221 2 23 6677777777766311
Q ss_pred ccccCCcccccccchhhHHHHhhcCCCCCCCcEEEEeccCCCcccCCchhhcccccccEEEEeCCCCCCCCC-CCCCCCC
Q 037953 297 KAVKRWPEAISNENAAKHEAICEALWPPPNLESLEIAGFRGRKMMLSTNWMASLNMLKKLRLLNCPTCEIMP-PLGQLPS 375 (625)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~p~~l~~l~~L~~L~L~~c~~l~~l~-~l~~l~~ 375 (625)
+. ..+..+++|+.|++++|........|..+..+++|++|++++|. +..+| .++.+++
T Consensus 342 ~~--------------------~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~l~~ 400 (606)
T 3vq2_A 342 IS--------------------FKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNG-AIIMSANFMGLEE 400 (606)
T ss_dssp EE--------------------CCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCS-EEEECCCCTTCTT
T ss_pred cc--------------------hhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCc-cccchhhccCCCC
Confidence 00 02333444455544444332210013333444444444444432 22222 2344444
Q ss_pred cceeeccccccceeeC-ccCCCCCCCCCCCCCCC------CCCCCCCCCCCeeeccCcccccccccCCCCcccCCCccEE
Q 037953 376 LEILLIKDMTSVERVG-DESLGIANGDHGAPSSS------SVNNIAFPKLKELEFSGLQEWEDWDFRKEDITIMPQINSL 448 (625)
Q Consensus 376 L~~L~L~~~~~l~~l~-~~~~~~~~~~~~~~~~~------~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~l~~L~~L 448 (625)
|+.|++++|...+..+ ..+.....+..+.++.+ +..+..+++|+.|+++++.-..... +..++.+++|+.|
T Consensus 401 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~~l~~L~~L 478 (606)
T 3vq2_A 401 LQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTL--SNVFANTTNLTFL 478 (606)
T ss_dssp CCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEE--CSCCTTCTTCCEE
T ss_pred CCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcch--HHhhccCCCCCEE
Confidence 4444444433111111 12222222222222211 1124566777777777764222111 1113367777777
Q ss_pred EEecCCCCCcCCcCCCCCCCCCEEEEecCcchhhcccccccccCCCCceEEecCCC
Q 037953 449 SIYGCHKLKSLPDQLLQSSTLKTLRINRCRVLEEHFKKDRSKISHIPDIQIYERGP 504 (625)
Q Consensus 449 ~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~l~~l~~l~~~~~~~ 504 (625)
++++|...+..|..+..+++|++|++++|+.....+ ..+..+.++..+.+.++..
T Consensus 479 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~l~~N~l 533 (606)
T 3vq2_A 479 DLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDS-SHYNQLYSLSTLDCSFNRI 533 (606)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEG-GGTTTCTTCCEEECTTSCC
T ss_pred ECCCCcCCccChhhhcccccCCEEECCCCcCCCcCH-HHccCCCcCCEEECCCCcC
Confidence 777764333345556667777777777774433223 4555666666666655543
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=3.7e-28 Score=270.34 Aligned_cols=142 Identities=15% Similarity=0.080 Sum_probs=113.6
Q ss_pred cCCCCceEEEEEEcCCCCcc-hhhhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhh
Q 037953 68 NTCPEKLRHLMLVLGYEAPS-LVSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNE 146 (625)
Q Consensus 68 ~~~~~~lr~L~l~~~~~~~~-~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~ 146 (625)
.....++++|++++|.+..+ |..|.++++|++|++++|. +....| ..|+++++|++|+++ +|.+..
T Consensus 53 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~--l~~~~~---~~~~~l~~L~~L~L~--------~n~i~~ 119 (606)
T 3t6q_A 53 FSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANP--LIFMAE---TALSGPKALKHLFFI--------QTGISS 119 (606)
T ss_dssp STTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC--CSEECT---TTTSSCTTCCEEECT--------TSCCSC
T ss_pred hccCccceEEECCCCccceeChhhccCccccCeeeCCCCc--ccccCh---hhhcccccccEeecc--------ccCccc
Confidence 34567899999999998665 6789999999999999975 456667 889999999999999 888887
Q ss_pred h-hcccccccccceecC--CCCCCCc-hhhcCCCCCceEeecCCCCCCcc-ccccccccccc--eEEecCcccccccccC
Q 037953 147 I-LNGVEKLIHLRYLKL--NLVGDLP-EKCCELLNLQTLELENSSHFKRF-PQGIGKLINLR--HLIFTEDLLEYMPKGI 219 (625)
Q Consensus 147 l-p~~~~~L~~L~~L~L--~~l~~lP-~~i~~L~~L~~L~L~~~~~l~~l-p~~l~~L~~L~--~L~l~~~~l~~lp~~i 219 (625)
+ |..++++++|++|++ |.+..++ ..+..+++|++|++++|. +..+ |..++.+++|+ .|+++.|.+..++...
T Consensus 120 l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~ 198 (606)
T 3t6q_A 120 IDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNA-IHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGA 198 (606)
T ss_dssp GGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSC-CCEECHHHHHTTTTCCSEEEECTTCCCCEECTTT
T ss_pred CCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCc-ccccChhhhhhhcccceeEEecCCCccCccChhH
Confidence 7 567999999999999 4477652 344559999999999998 7766 55588899998 7788777777766554
Q ss_pred CCcc
Q 037953 220 EKLT 223 (625)
Q Consensus 220 ~~L~ 223 (625)
....
T Consensus 199 ~~~~ 202 (606)
T 3t6q_A 199 FDSA 202 (606)
T ss_dssp TTTC
T ss_pred hhhc
Confidence 3333
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=7.4e-28 Score=271.60 Aligned_cols=153 Identities=18% Similarity=0.200 Sum_probs=127.6
Q ss_pred CCCceEEEEEEcCCCCcchh-hhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhhh
Q 037953 70 CPEKLRHLMLVLGYEAPSLV-SIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEIL 148 (625)
Q Consensus 70 ~~~~lr~L~l~~~~~~~~~~-~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp 148 (625)
.+.++++|++++|.+..+++ .+.++++|++|++++|. +....| .+|+++++|++|+|+ +|.+..+|
T Consensus 23 ~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~--l~~~~~---~~~~~l~~L~~L~L~--------~n~l~~l~ 89 (680)
T 1ziw_A 23 LPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNT--ISKLEP---ELCQKLPMLKVLNLQ--------HNELSQLS 89 (680)
T ss_dssp SCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSC--CCCCCT---THHHHCTTCCEEECC--------SSCCCCCC
T ss_pred cCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCc--cCccCH---HHHhcccCcCEEECC--------CCccCccC
Confidence 46799999999999977765 68999999999999965 566778 899999999999999 88888888
Q ss_pred c-ccccccccceecC--CCCCCCc-hhhcCCCCCceEeecCCCCCCcc-ccccccccccceEEecCccccccccc---CC
Q 037953 149 N-GVEKLIHLRYLKL--NLVGDLP-EKCCELLNLQTLELENSSHFKRF-PQGIGKLINLRHLIFTEDLLEYMPKG---IE 220 (625)
Q Consensus 149 ~-~~~~L~~L~~L~L--~~l~~lP-~~i~~L~~L~~L~L~~~~~l~~l-p~~l~~L~~L~~L~l~~~~l~~lp~~---i~ 220 (625)
. +|+++++|++|++ |.+..+| ..++++++|++|++++|. +... |..++++++|++|+++.|.++.++.. ..
T Consensus 90 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~ 168 (680)
T 1ziw_A 90 DKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNG-LSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIF 168 (680)
T ss_dssp TTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSC-CSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGG
T ss_pred hhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCc-ccccCchhhcccccCCEEEccCCcccccCHHHhhcc
Confidence 6 5999999999999 4477776 579999999999999998 6554 55689999999999988888877643 23
Q ss_pred CccccccCCceEecCC
Q 037953 221 KLTSLRTLSEFVVASG 236 (625)
Q Consensus 221 ~L~~L~~L~~~~~~~~ 236 (625)
.+++|+.|++..+...
T Consensus 169 ~~~~L~~L~L~~n~l~ 184 (680)
T 1ziw_A 169 ANSSLKKLELSSNQIK 184 (680)
T ss_dssp TTCEESEEECTTCCCC
T ss_pred ccccccEEECCCCccc
Confidence 4578888887655433
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=5.4e-27 Score=255.95 Aligned_cols=378 Identities=12% Similarity=0.078 Sum_probs=191.3
Q ss_pred CCceEEEEEEcCCCCcch-hhhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhhhc
Q 037953 71 PEKLRHLMLVLGYEAPSL-VSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEILN 149 (625)
Q Consensus 71 ~~~lr~L~l~~~~~~~~~-~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp~ 149 (625)
++++++|++++|.+..++ ..+.++++|++|++++|. +.+..| ..|+++++|++|+|+ +|.+..+|.
T Consensus 20 ~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~--l~~~~~---~~~~~l~~L~~L~Ls--------~N~l~~lp~ 86 (520)
T 2z7x_B 20 SQKTTILNISQNYISELWTSDILSLSKLRILIISHNR--IQYLDI---SVFKFNQELEYLDLS--------HNKLVKISC 86 (520)
T ss_dssp CTTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSC--CCEEEG---GGGTTCTTCCEEECC--------SSCCCEEEC
T ss_pred cccccEEECCCCcccccChhhccccccccEEecCCCc--cCCcCh---HHhhcccCCCEEecC--------CCceeecCc
Confidence 366777777777765554 466777777777777754 344445 667777777777777 666666665
Q ss_pred ccccccccceecC--CCCCC--CchhhcCCCCCceEeecCCCCCCcccccccccccc--ceEEecCccc---ccccccCC
Q 037953 150 GVEKLIHLRYLKL--NLVGD--LPEKCCELLNLQTLELENSSHFKRFPQGIGKLINL--RHLIFTEDLL---EYMPKGIE 220 (625)
Q Consensus 150 ~~~~L~~L~~L~L--~~l~~--lP~~i~~L~~L~~L~L~~~~~l~~lp~~l~~L~~L--~~L~l~~~~l---~~lp~~i~ 220 (625)
. .+++|++|+| |.+.. +|..++++++|++|++++|. +.. ..+..+++| ++|+++.|.+ ...|..++
T Consensus 87 ~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~-l~~--~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~ 161 (520)
T 2z7x_B 87 H--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTH-LEK--SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQ 161 (520)
T ss_dssp C--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESS-CCG--GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTT
T ss_pred c--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcc-cch--hhccccccceeeEEEeeccccccccccccccc
Confidence 5 6777777777 33543 45677777777777777776 544 345666666 7777755444 33344444
Q ss_pred CccccccCCc--eEecCCCCcCCCcccChhccccccccccceEEeccCC---CCChhHHHHhccCCCCCCCeEEEEEecc
Q 037953 221 KLTSLRTLSE--FVVASGGGRYGSEACKLEGLRHLNHLRGSLKVRGLGN---VADVDEVKNAHLEKKKNLVRLILRFKDI 295 (625)
Q Consensus 221 ~L~~L~~L~~--~~~~~~~~~~~~~~~~l~~l~~L~~L~~~L~l~~~~~---~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 295 (625)
.+.. +.+.+ ..+.... ...-..+.+++.|+ .+.+..+.. .....+..+ .+..+++|+.|+++.+.+
T Consensus 162 ~l~~-~~l~l~l~~n~~~~------~~~~~~~~~l~~L~-~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l 232 (520)
T 2z7x_B 162 DFNT-ESLHIVFPTNKEFH------FILDVSVKTVANLE-LSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIET 232 (520)
T ss_dssp TCCE-EEEEEECCSSSCCC------CCCCCCCTTCSEEE-ECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEE
T ss_pred cccc-ceEEEEeccCcchh------hhhhhhhhccccee-eccccccccccccceeecchh-hhccccchhhcccccccc
Confidence 3321 11111 0000000 00001112233333 344433210 001222222 344455555555554432
Q ss_pred cccccCC-cc-----cc--cccc-hhhHHHHhhcC-----CCCCCCcEEEEeccCCCcccCCc-hhhccc---ccccEEE
Q 037953 296 DKAVKRW-PE-----AI--SNEN-AAKHEAICEAL-----WPPPNLESLEIAGFRGRKMMLST-NWMASL---NMLKKLR 357 (625)
Q Consensus 296 ~~~~~~~-~~-----~~--~~~~-~~~~~~~~~~l-----~~~~~L~~L~L~~~~~~~~~~~p-~~l~~l---~~L~~L~ 357 (625)
++..... .. .. .... ....+.++..+ ..+++|+.++++++.. .+ | .++..+ ++|+.|+
T Consensus 233 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~---p~~~~~~~~~~~~L~~L~ 308 (520)
T 2z7x_B 233 TWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GF---PQSYIYEIFSNMNIKNFT 308 (520)
T ss_dssp EHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CS---CTHHHHHHHHTCCCSEEE
T ss_pred CHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce-ec---chhhhhcccccCceeEEE
Confidence 1000000 00 00 0000 00001233333 4555666666665555 33 4 344433 4566667
Q ss_pred EeCCCCCCCCCCCCCCCCcceeeccccccceeeCccCCCCCCCCCCCCCCCCCCCCCCCCCCeeeccCcccccccccCCC
Q 037953 358 LLNCPTCEIMPPLGQLPSLEILLIKDMTSVERVGDESLGIANGDHGAPSSSSVNNIAFPKLKELEFSGLQEWEDWDFRKE 437 (625)
Q Consensus 358 L~~c~~l~~l~~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~ 437 (625)
+++|. +...+..+.+++|++|++++|...+.+|.. +..+++|++|+++++. +..++..+.
T Consensus 309 l~~n~-l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~------------------~~~l~~L~~L~L~~N~-l~~l~~~~~ 368 (520)
T 2z7x_B 309 VSGTR-MVHMLCPSKISPFLHLDFSNNLLTDTVFEN------------------CGHLTELETLILQMNQ-LKELSKIAE 368 (520)
T ss_dssp EESSC-CCCCCCCSSCCCCCEEECCSSCCCTTTTTT------------------CCCCSSCCEEECCSSC-CCBHHHHHH
T ss_pred cCCCc-cccccchhhCCcccEEEeECCccChhhhhh------------------hccCCCCCEEEccCCc-cCccccchH
Confidence 66643 333333367778888888876622223322 4567778888887653 222211011
Q ss_pred CcccCCCccEEEEecCCCCCc-CCcC-CCCCCCCCEEEEecCcchhhcccccccccCCCCceEEecCC
Q 037953 438 DITIMPQINSLSIYGCHKLKS-LPDQ-LLQSSTLKTLRINRCRVLEEHFKKDRSKISHIPDIQIYERG 503 (625)
Q Consensus 438 ~~~~l~~L~~L~l~~c~~l~~-lp~~-~~~l~~L~~L~l~~c~~L~~~~~~~~~~l~~l~~l~~~~~~ 503 (625)
.++.+++|++|++++| .++. +|.. +..+++|++|++++|......+ ..++ .++..+.+..+.
T Consensus 369 ~~~~l~~L~~L~Ls~N-~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~l~--~~L~~L~Ls~N~ 432 (520)
T 2z7x_B 369 MTTQMKSLQQLDISQN-SVSYDEKKGDCSWTKSLLSLNMSSNILTDTIF-RCLP--PRIKVLDLHSNK 432 (520)
T ss_dssp HHTTCTTCCEEECCSS-CCBCCGGGCSCCCCTTCCEEECCSSCCCGGGG-GSCC--TTCCEEECCSSC
T ss_pred HHhhCCCCCEEECCCC-cCCcccccchhccCccCCEEECcCCCCCcchh-hhhc--ccCCEEECCCCc
Confidence 1235778888888875 4444 7654 4557778888888776544443 2222 455566555543
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=7.6e-26 Score=260.64 Aligned_cols=285 Identities=18% Similarity=0.156 Sum_probs=197.3
Q ss_pred CCCceEEEEEEcCCCCcc-hhhhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhh-
Q 037953 70 CPEKLRHLMLVLGYEAPS-LVSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEI- 147 (625)
Q Consensus 70 ~~~~lr~L~l~~~~~~~~-~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~l- 147 (625)
.++++++|++++|.+..+ +..+.++++|++|++++|. ......| ..|.++++|++|+|+ +|.+..+
T Consensus 22 lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~-~~~~i~~---~~f~~L~~L~~L~Ls--------~N~l~~~~ 89 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQY-TPLTIDK---EAFRNLPNLRILDLG--------SSKIYFLH 89 (844)
T ss_dssp SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTC-CCCEECT---TTTSSCTTCCEEECT--------TCCCCEEC
T ss_pred CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCC-CccccCH---HHhcCCCCCCEEECC--------CCcCcccC
Confidence 678999999999999666 6789999999999999974 2333446 889999999999999 8887766
Q ss_pred hcccccccccceecC--CCCC-CCchh--hcCCCCCceEeecCCCCCCccc--cccccccccceEEecCcccccc-cccC
Q 037953 148 LNGVEKLIHLRYLKL--NLVG-DLPEK--CCELLNLQTLELENSSHFKRFP--QGIGKLINLRHLIFTEDLLEYM-PKGI 219 (625)
Q Consensus 148 p~~~~~L~~L~~L~L--~~l~-~lP~~--i~~L~~L~~L~L~~~~~l~~lp--~~l~~L~~L~~L~l~~~~l~~l-p~~i 219 (625)
|..|+++++|++|+| |.+. .+|.. ++++++|++|+|++|. +..++ ..++++++|++|+++.|.+..+ |..+
T Consensus 90 p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l 168 (844)
T 3j0a_A 90 PDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQ-IRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHEL 168 (844)
T ss_dssp TTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCC-CCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGG
T ss_pred HhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCc-ccccccchhHhhCCCCCEEECCCCcCCeeCHHHc
Confidence 888999999999999 5554 46665 9999999999999998 76653 4699999999999987777654 4556
Q ss_pred CCc--cccccCCceEecCCCCcCCCcccChhcccc---ccccccceEEeccCCCCCh-----------------------
Q 037953 220 EKL--TSLRTLSEFVVASGGGRYGSEACKLEGLRH---LNHLRGSLKVRGLGNVADV----------------------- 271 (625)
Q Consensus 220 ~~L--~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~---L~~L~~~L~l~~~~~~~~~----------------------- 271 (625)
+.+ ++|+.|++..+.... ..+..++.+.+ ...|+ .|.++++.-....
T Consensus 169 ~~l~~~~L~~L~L~~n~l~~----~~~~~~~~~~~~~~~~~L~-~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~ 243 (844)
T 3j0a_A 169 EPLQGKTLSFFSLAANSLYS----RVSVDWGKCMNPFRNMVLE-ILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIM 243 (844)
T ss_dssp HHHHHCSSCCCEECCSBSCC----CCCCCCCSSSCTTTTCCBS-EEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCC
T ss_pred ccccCCccceEECCCCcccc----ccccchhhcCCccccCcee-EEecCCCcCchhHHHHHHhhcCcccccceecccccc
Confidence 666 677777766554433 11111111111 00244 4444443110000
Q ss_pred ---------hHHHHhccCCC--CCCCeEEEEEecccccccCCcccccccchhhHHHHhhcCCCCCCCcEEEEeccCCCcc
Q 037953 272 ---------DEVKNAHLEKK--KNLVRLILRFKDIDKAVKRWPEAISNENAAKHEAICEALWPPPNLESLEIAGFRGRKM 340 (625)
Q Consensus 272 ---------~~~~~~~l~~l--~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~ 340 (625)
.......+.++ ++|+.|++++|.+. ...+..+..+++|+.|++++|.....
T Consensus 244 ~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~------------------~~~~~~~~~l~~L~~L~L~~n~i~~~ 305 (844)
T 3j0a_A 244 GAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVF------------------SLNSRVFETLKDLKVLNLAYNKINKI 305 (844)
T ss_dssp BCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCC------------------EECSCCSSSCCCCCEEEEESCCCCEE
T ss_pred cccccccccCCCChhhhhccccCCccEEECCCCccc------------------ccChhhhhcCCCCCEEECCCCcCCCC
Confidence 01111122222 56777877766422 22344567788899999988887665
Q ss_pred cCCchhhcccccccEEEEeCCCCCCCCC-CCCCCCCcceeeccccccceeeCcc
Q 037953 341 MLSTNWMASLNMLKKLRLLNCPTCEIMP-PLGQLPSLEILLIKDMTSVERVGDE 393 (625)
Q Consensus 341 ~~~p~~l~~l~~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~L~~~~~l~~l~~~ 393 (625)
. |..+..+++|++|++++|......+ .++.+++|+.|++++|. ++.++..
T Consensus 306 ~--~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~ 356 (844)
T 3j0a_A 306 A--DEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNH-IAIIQDQ 356 (844)
T ss_dssp C--TTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCC-CCCCCSS
T ss_pred C--hHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCC-CCccChh
Confidence 2 5677888899999998865433334 47888889999998875 5655543
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=4.6e-27 Score=258.28 Aligned_cols=149 Identities=19% Similarity=0.242 Sum_probs=119.2
Q ss_pred CCCceEEEEEEcCCCCcc-hhhhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhhh
Q 037953 70 CPEKLRHLMLVLGYEAPS-LVSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEIL 148 (625)
Q Consensus 70 ~~~~lr~L~l~~~~~~~~-~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp 148 (625)
.++++++|++++|.+..+ |..+.++++|++|++++|. +....| +.|+++++|++|+|+ +|.+..+|
T Consensus 24 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~--i~~~~~---~~~~~l~~L~~L~Ls--------~n~l~~~~ 90 (549)
T 2z81_A 24 LTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSR--INTIEG---DAFYSLGSLEHLDLS--------DNHLSSLS 90 (549)
T ss_dssp CCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSC--CCEECT---TTTTTCTTCCEEECT--------TSCCCSCC
T ss_pred CCCCccEEECcCCccCccChhhhhcCCcccEEECCCCC--cCccCh---hhccccccCCEEECC--------CCccCccC
Confidence 356899999999998666 4678899999999999975 556666 789999999999999 88877775
Q ss_pred cc-cccccccceecC--CCCCC--CchhhcCCCCCceEeecCCCCCCcccc-ccccccccceEEecCccccc-ccccCCC
Q 037953 149 NG-VEKLIHLRYLKL--NLVGD--LPEKCCELLNLQTLELENSSHFKRFPQ-GIGKLINLRHLIFTEDLLEY-MPKGIEK 221 (625)
Q Consensus 149 ~~-~~~L~~L~~L~L--~~l~~--lP~~i~~L~~L~~L~L~~~~~l~~lp~-~l~~L~~L~~L~l~~~~l~~-lp~~i~~ 221 (625)
.. |+++++|++|++ |.+.. .|..++++++|++|++++|..++.+|. .++++++|++|+++.|.++. .|..+++
T Consensus 91 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~ 170 (549)
T 2z81_A 91 SSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKS 170 (549)
T ss_dssp HHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTT
T ss_pred HHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhc
Confidence 54 899999999999 44664 467889999999999999986777774 68899999999997666654 5667777
Q ss_pred ccccccCCce
Q 037953 222 LTSLRTLSEF 231 (625)
Q Consensus 222 L~~L~~L~~~ 231 (625)
+++|++|++.
T Consensus 171 l~~L~~L~l~ 180 (549)
T 2z81_A 171 IRDIHHLTLH 180 (549)
T ss_dssp CSEEEEEEEE
T ss_pred cccCceEecc
Confidence 7766666544
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=5.2e-27 Score=259.07 Aligned_cols=379 Identities=17% Similarity=0.136 Sum_probs=226.8
Q ss_pred CCCCceEEEEEEcCCCCcch-hhhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhh
Q 037953 69 TCPEKLRHLMLVLGYEAPSL-VSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEI 147 (625)
Q Consensus 69 ~~~~~lr~L~l~~~~~~~~~-~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~l 147 (625)
...+++++|++++|.+..++ ..+.++++|++|++++|. +....| ..|+++++|++|+++ +|.+..+
T Consensus 49 ~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~--l~~~~~---~~~~~l~~L~~L~L~--------~n~l~~l 115 (570)
T 2z63_A 49 FSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP--IQSLAL---GAFSGLSSLQKLVAV--------ETNLASL 115 (570)
T ss_dssp TTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC--CCEECT---TTTTTCTTCCEEECT--------TSCCCCS
T ss_pred hCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCc--CCccCH---hhhcCcccccccccc--------ccccccC
Confidence 34678999999999987775 568899999999999975 556666 789999999999999 8888888
Q ss_pred hc-ccccccccceecC--CCCCC--CchhhcCCCCCceEeecCCCCCCccc-ccccccccc----ceEEecCcccccccc
Q 037953 148 LN-GVEKLIHLRYLKL--NLVGD--LPEKCCELLNLQTLELENSSHFKRFP-QGIGKLINL----RHLIFTEDLLEYMPK 217 (625)
Q Consensus 148 p~-~~~~L~~L~~L~L--~~l~~--lP~~i~~L~~L~~L~L~~~~~l~~lp-~~l~~L~~L----~~L~l~~~~l~~lp~ 217 (625)
|. .++++++|++|++ |.+.. +|..++++++|++|++++|. +..++ ..++.+++| +.|+++.|.+..++.
T Consensus 116 ~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~ 194 (570)
T 2z63_A 116 ENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQP 194 (570)
T ss_dssp TTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSC-CCEECGGGGHHHHTCTTCCCEEECTTCCCCEECT
T ss_pred CCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCc-cceecHHHccchhccchhhhhcccCCCCceecCH
Confidence 65 5999999999999 44654 79999999999999999998 76654 457777777 667775555443332
Q ss_pred --------------------------------------------------------------------------------
Q 037953 218 -------------------------------------------------------------------------------- 217 (625)
Q Consensus 218 -------------------------------------------------------------------------------- 217 (625)
T Consensus 195 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~ 274 (570)
T 2z63_A 195 GAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDI 274 (570)
T ss_dssp TTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCS
T ss_pred HHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhc
Confidence
Q ss_pred --cCCCccccccCCceEecCCCCcCCCcccChhccccccccccceEEeccCCCCChhHHHHhccCCCCCCCeEEEEEecc
Q 037953 218 --GIEKLTSLRTLSEFVVASGGGRYGSEACKLEGLRHLNHLRGSLKVRGLGNVADVDEVKNAHLEKKKNLVRLILRFKDI 295 (625)
Q Consensus 218 --~i~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 295 (625)
.++.+++|+.|++..+.... .+.. +..+ +|+ .|.+.++.-. .. + ...+++|+.|++++|..
T Consensus 275 ~~~~~~l~~L~~L~l~~~~l~~-----l~~~---~~~~-~L~-~L~l~~n~~~-~l----~--~~~l~~L~~L~l~~n~~ 337 (570)
T 2z63_A 275 IDLFNCLTNVSSFSLVSVTIER-----VKDF---SYNF-GWQ-HLELVNCKFG-QF----P--TLKLKSLKRLTFTSNKG 337 (570)
T ss_dssp TTTTGGGTTCSEEEEESCEECS-----CCBC---CSCC-CCS-EEEEESCBCS-SC----C--BCBCSSCCEEEEESCBS
T ss_pred hhhhcCcCcccEEEecCccchh-----hhhh---hccC-Ccc-EEeeccCccc-cc----C--cccccccCEEeCcCCcc
Confidence 23334445555444333222 2222 2333 455 5666554321 11 1 13455666666665532
Q ss_pred cccccCC-ccccc--ccch---hhHHHHhhcCCCCCCCcEEEEeccCCCcccCCchhhcccccccEEEEeCCCCCCCCC-
Q 037953 296 DKAVKRW-PEAIS--NENA---AKHEAICEALWPPPNLESLEIAGFRGRKMMLSTNWMASLNMLKKLRLLNCPTCEIMP- 368 (625)
Q Consensus 296 ~~~~~~~-~~~~~--~~~~---~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~p~~l~~l~~L~~L~L~~c~~l~~l~- 368 (625)
.+..... ..... .... ......+..+..+++|+.|++++|..... |..+..+++|+.|++++|......+
T Consensus 338 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~---~~~~~~l~~L~~L~l~~n~l~~~~~~ 414 (570)
T 2z63_A 338 GNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITM---SSNFLGLEQLEHLDFQHSNLKQMSEF 414 (570)
T ss_dssp CCBCCCCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEE---EEEEETCTTCCEEECTTSEEESCTTS
T ss_pred ccccccccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccc---cccccccCCCCEEEccCCccccccch
Confidence 1100000 00000 0000 00000122233455566666655554444 4445555666666666544322222
Q ss_pred -CCCCCCCcceeeccccccceeeCccCCCCCCCCCCCCCCCCCCCCCCCCCCeeeccCcccc-cccccCCCCcccCCCcc
Q 037953 369 -PLGQLPSLEILLIKDMTSVERVGDESLGIANGDHGAPSSSSVNNIAFPKLKELEFSGLQEW-EDWDFRKEDITIMPQIN 446 (625)
Q Consensus 369 -~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l-~~~~~~~~~~~~l~~L~ 446 (625)
.+..+++|++|++++|......+.. +..+++|++|+++++.-. ..++ ..+..+++|+
T Consensus 415 ~~~~~l~~L~~L~l~~n~l~~~~~~~------------------~~~l~~L~~L~l~~n~l~~~~~p---~~~~~l~~L~ 473 (570)
T 2z63_A 415 SVFLSLRNLIYLDISHTHTRVAFNGI------------------FNGLSSLEVLKMAGNSFQENFLP---DIFTELRNLT 473 (570)
T ss_dssp CTTTTCTTCCEEECTTSCCEECCTTT------------------TTTCTTCCEEECTTCEEGGGEEC---SCCTTCTTCC
T ss_pred hhhhcCCCCCEEeCcCCcccccchhh------------------hhcCCcCcEEECcCCcCccccch---hhhhcccCCC
Confidence 3555666666666665422222211 456778888888876422 1222 2244678888
Q ss_pred EEEEecCCCCCc-CCcCCCCCCCCCEEEEecCcchhhcccccccccCCCCceEEecCCC
Q 037953 447 SLSIYGCHKLKS-LPDQLLQSSTLKTLRINRCRVLEEHFKKDRSKISHIPDIQIYERGP 504 (625)
Q Consensus 447 ~L~l~~c~~l~~-lp~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~l~~l~~l~~~~~~~ 504 (625)
.|++++|. ++. .|..+..+++|++|++++|. ++.++...+..+.++..+.+.++..
T Consensus 474 ~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~N~~ 530 (570)
T 2z63_A 474 FLDLSQCQ-LEQLSPTAFNSLSSLQVLNMASNQ-LKSVPDGIFDRLTSLQKIWLHTNPW 530 (570)
T ss_dssp EEECTTSC-CCEECTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred EEECCCCc-cccCChhhhhcccCCCEEeCCCCc-CCCCCHHHhhcccCCcEEEecCCcc
Confidence 88888864 444 46677778888888888874 4444434455666666666665543
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.7e-26 Score=252.03 Aligned_cols=364 Identities=15% Similarity=0.070 Sum_probs=236.2
Q ss_pred cCCCCceEEEEEEcCCCCcc-hhhhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhh
Q 037953 68 NTCPEKLRHLMLVLGYEAPS-LVSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNE 146 (625)
Q Consensus 68 ~~~~~~lr~L~l~~~~~~~~-~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~ 146 (625)
.....++++|++++|.+..+ |..+.++++|++|++++|. ...+| .. .+++|++|+|+ +|.+..
T Consensus 41 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~---l~~lp---~~--~l~~L~~L~L~--------~N~l~~ 104 (520)
T 2z7x_B 41 ILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK---LVKIS---CH--PTVNLKHLDLS--------FNAFDA 104 (520)
T ss_dssp HTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSC---CCEEE---CC--CCCCCSEEECC--------SSCCSS
T ss_pred ccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCc---eeecC---cc--ccCCccEEecc--------CCcccc
Confidence 34567999999999999766 6789999999999999986 33566 43 89999999999 888765
Q ss_pred --hhcccccccccceecC--CCCCCCchhhcCCCCC--ceEeecCCCC--CCcccccccc--------------------
Q 037953 147 --ILNGVEKLIHLRYLKL--NLVGDLPEKCCELLNL--QTLELENSSH--FKRFPQGIGK-------------------- 198 (625)
Q Consensus 147 --lp~~~~~L~~L~~L~L--~~l~~lP~~i~~L~~L--~~L~L~~~~~--l~~lp~~l~~-------------------- 198 (625)
+|..|+++++|++|++ |.+.. ..+..+++| ++|++++|.. ....|..+..
T Consensus 105 ~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~ 182 (520)
T 2z7x_B 105 LPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFIL 182 (520)
T ss_dssp CCCCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCC
T ss_pred ccchhhhccCCcceEEEecCcccch--hhccccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhh
Confidence 5789999999999999 44655 467788888 9999999983 2455555555
Q ss_pred ------ccccceEEecCcc-------cccccccCCCccccccCCceEecCCCCcCCCcccChhccccccccccceEEecc
Q 037953 199 ------LINLRHLIFTEDL-------LEYMPKGIEKLTSLRTLSEFVVASGGGRYGSEACKLEGLRHLNHLRGSLKVRGL 265 (625)
Q Consensus 199 ------L~~L~~L~l~~~~-------l~~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~L~l~~~ 265 (625)
+++|+.|++++|. +......++.+++|+.|++..+...... ...+......++|+ .|.+.++
T Consensus 183 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~----~~~~~~~~~~~~L~-~L~l~~n 257 (520)
T 2z7x_B 183 DVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNS----FIRILQLVWHTTVW-YFSISNV 257 (520)
T ss_dssp CCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHH----HHHHHHHHHTSSCS-EEEEEEE
T ss_pred hhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHH----HHHHHHHhhhCccc-EEEeecc
Confidence 4455555553332 1111113344444444333322111000 00000000011233 3333332
Q ss_pred CCCCChhHHHHhcc-----CCCC--------------------------CCCeEEEEEecccccccCCcccccccchhhH
Q 037953 266 GNVADVDEVKNAHL-----EKKK--------------------------NLVRLILRFKDIDKAVKRWPEAISNENAAKH 314 (625)
Q Consensus 266 ~~~~~~~~~~~~~l-----~~l~--------------------------~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 314 (625)
. +.+..+..+ ..++ +|+.|++++|.+.
T Consensus 258 ~----l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~------------------ 315 (520)
T 2z7x_B 258 K----LQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMV------------------ 315 (520)
T ss_dssp E----EESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCC------------------
T ss_pred c----ccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCccc------------------
Confidence 1 000111122 3334 4555555544311
Q ss_pred HHHhhcCCCCCCCcEEEEeccCCCcccCCchhhcccccccEEEEeCCCCCC--CCC-CCCCCCCcceeeccccccceeeC
Q 037953 315 EAICEALWPPPNLESLEIAGFRGRKMMLSTNWMASLNMLKKLRLLNCPTCE--IMP-PLGQLPSLEILLIKDMTSVERVG 391 (625)
Q Consensus 315 ~~~~~~l~~~~~L~~L~L~~~~~~~~~~~p~~l~~l~~L~~L~L~~c~~l~--~l~-~l~~l~~L~~L~L~~~~~l~~l~ 391 (625)
. ......+++|+.|++++|...... |.++..+++|+.|++++|...+ .+| .++.+++|++|++++|.....+|
T Consensus 316 -~-~~~~~~l~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~ 391 (520)
T 2z7x_B 316 -H-MLCPSKISPFLHLDFSNNLLTDTV--FENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEK 391 (520)
T ss_dssp -C-CCCCSSCCCCCEEECCSSCCCTTT--TTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGG
T ss_pred -c-ccchhhCCcccEEEeECCccChhh--hhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccc
Confidence 0 001257889999999999877632 8888999999999999965433 333 37889999999999987333366
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCCCCeeeccCcccccccccCCCCcccC-CCccEEEEecCCCCCcCCcCCCCCCCCC
Q 037953 392 DESLGIANGDHGAPSSSSVNNIAFPKLKELEFSGLQEWEDWDFRKEDITIM-PQINSLSIYGCHKLKSLPDQLLQSSTLK 470 (625)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~l-~~L~~L~l~~c~~l~~lp~~~~~l~~L~ 470 (625)
.+. ...+++|+.|+++++.-....+ . .+ ++|+.|++++| .++.+|..+..+++|+
T Consensus 392 ~~~-----------------~~~l~~L~~L~Ls~N~l~~~~~-~-----~l~~~L~~L~Ls~N-~l~~ip~~~~~l~~L~ 447 (520)
T 2z7x_B 392 KGD-----------------CSWTKSLLSLNMSSNILTDTIF-R-----CLPPRIKVLDLHSN-KIKSIPKQVVKLEALQ 447 (520)
T ss_dssp GCS-----------------CCCCTTCCEEECCSSCCCGGGG-G-----SCCTTCCEEECCSS-CCCCCCGGGGGCTTCC
T ss_pred cch-----------------hccCccCCEEECcCCCCCcchh-h-----hhcccCCEEECCCC-cccccchhhhcCCCCC
Confidence 542 4567899999999875222221 1 23 69999999996 7889998888899999
Q ss_pred EEEEecCcchhhcccccccccCCCCceEEecCCCC
Q 037953 471 TLRINRCRVLEEHFKKDRSKISHIPDIQIYERGPG 505 (625)
Q Consensus 471 ~L~l~~c~~L~~~~~~~~~~l~~l~~l~~~~~~~~ 505 (625)
+|++++|. ++.+|...+..+.++..+.+.++...
T Consensus 448 ~L~L~~N~-l~~l~~~~~~~l~~L~~L~l~~N~~~ 481 (520)
T 2z7x_B 448 ELNVASNQ-LKSVPDGIFDRLTSLQKIWLHTNPWD 481 (520)
T ss_dssp EEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred EEECCCCc-CCccCHHHhccCCcccEEECcCCCCc
Confidence 99999984 56777333666777888887776654
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.94 E-value=6e-26 Score=249.96 Aligned_cols=377 Identities=14% Similarity=0.112 Sum_probs=207.2
Q ss_pred EEEEEEcCCCCcchhhhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhh-hccccc
Q 037953 75 RHLMLVLGYEAPSLVSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEI-LNGVEK 153 (625)
Q Consensus 75 r~L~l~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~l-p~~~~~ 153 (625)
++++++++.+..+|..+. ++|++|++++|. +....| ..|+++++|++|+|+ +|.+..+ |..|++
T Consensus 34 ~~l~ls~~~L~~ip~~~~--~~L~~L~Ls~N~--i~~~~~---~~~~~l~~L~~L~Ls--------~N~l~~~~~~~~~~ 98 (562)
T 3a79_B 34 SMVDYSNRNLTHVPKDLP--PRTKALSLSQNS--ISELRM---PDISFLSELRVLRLS--------HNRIRSLDFHVFLF 98 (562)
T ss_dssp CEEECTTSCCCSCCTTSC--TTCCEEECCSSC--CCCCCG---GGTTTCTTCCEEECC--------SCCCCEECTTTTTT
T ss_pred cEEEcCCCCCccCCCCCC--CCcCEEECCCCC--ccccCh---hhhccCCCccEEECC--------CCCCCcCCHHHhCC
Confidence 566666666666665543 667777777654 344444 566677777777777 6665555 455666
Q ss_pred ccccceecC-CC-CCCCchhhcCCCCCceEeecCCCCCCccc--cccccccccceEEecCcccccccccCCCcccc--cc
Q 037953 154 LIHLRYLKL-NL-VGDLPEKCCELLNLQTLELENSSHFKRFP--QGIGKLINLRHLIFTEDLLEYMPKGIEKLTSL--RT 227 (625)
Q Consensus 154 L~~L~~L~L-~~-l~~lP~~i~~L~~L~~L~L~~~~~l~~lp--~~l~~L~~L~~L~l~~~~l~~lp~~i~~L~~L--~~ 227 (625)
+++|++|+| .+ +..+|.. .+++|++|++++|. +..+| ..++++++|++|+++.|.+.. ..+..+++| +.
T Consensus 99 l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~Ls~N~-l~~l~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~ 173 (562)
T 3a79_B 99 NQDLEYLDVSHNRLQNISCC--PMASLRHLDLSFND-FDVLPVCKEFGNLTKLTFLGLSAAKFRQ--LDLLPVAHLHLSC 173 (562)
T ss_dssp CTTCCEEECTTSCCCEECSC--CCTTCSEEECCSSC-CSBCCCCGGGGGCTTCCEEEEECSBCCT--TTTGGGTTSCEEE
T ss_pred CCCCCEEECCCCcCCccCcc--ccccCCEEECCCCC-ccccCchHhhcccCcccEEecCCCcccc--CchhhhhhceeeE
Confidence 777777777 33 6666655 66777777777766 55543 456677777777776665544 234444444 55
Q ss_pred CCceEecC--CCCcCCCcccChhc-----------------------cccccccccceEEeccC----------------
Q 037953 228 LSEFVVAS--GGGRYGSEACKLEG-----------------------LRHLNHLRGSLKVRGLG---------------- 266 (625)
Q Consensus 228 L~~~~~~~--~~~~~~~~~~~l~~-----------------------l~~L~~L~~~L~l~~~~---------------- 266 (625)
|++..+.. .. ..+..+.. +.++++|+ .+.+....
T Consensus 174 L~L~~n~l~~~~----~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~-~L~l~~n~~~~~~l~~~~~~l~~l 248 (562)
T 3a79_B 174 ILLDLVSYHIKG----GETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQ-LSNIKLNDENCQRLMTFLSELTRG 248 (562)
T ss_dssp EEEEESSCCCCS----SSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEE-EEEEECCSTTHHHHHHHHHHHHSC
T ss_pred EEeecccccccc----cCcccccccCcceEEEEecCccchhhhhhhcccccceEE-EecccccccccchHHHHHHHHhcc
Confidence 55444332 11 00111111 12333444 44444321
Q ss_pred ------------CCCChhHHHHhccCCCCCCCeEEEEEecccccccCCc-----ccccccc-----hh---hHHHHhhcC
Q 037953 267 ------------NVADVDEVKNAHLEKKKNLVRLILRFKDIDKAVKRWP-----EAISNEN-----AA---KHEAICEAL 321 (625)
Q Consensus 267 ------------~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~-----~~~~~~~-----~~---~~~~~~~~l 321 (625)
-........+..+ ...+|++|++++|.+.+.++... ....... .. ........+
T Consensus 249 ~~L~~L~L~~~~l~~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~ 327 (562)
T 3a79_B 249 PTLLNVTLQHIETTWKCSVKLFQFF-WPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSV 327 (562)
T ss_dssp SSCEEEEEEEEEECHHHHHHHHHHH-TTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHH
T ss_pred CcceEEEecCCcCcHHHHHHHHHhh-hcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhh
Confidence 0000000011111 22378888888887554333221 0000000 00 000000000
Q ss_pred ----------------------CCCCCCcEEEEeccCCCcccCCchhhcccccccEEEEeCCCCCCCCC----CCCCCCC
Q 037953 322 ----------------------WPPPNLESLEIAGFRGRKMMLSTNWMASLNMLKKLRLLNCPTCEIMP----PLGQLPS 375 (625)
Q Consensus 322 ----------------------~~~~~L~~L~L~~~~~~~~~~~p~~l~~l~~L~~L~L~~c~~l~~l~----~l~~l~~ 375 (625)
..+++|+.|++++|...... |.++..+++|+.|++++| .++.++ .++.+++
T Consensus 328 ~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~l~~ 404 (562)
T 3a79_B 328 FAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSV--FQGCSTLKRLQTLILQRN-GLKNFFKVALMTKNMSS 404 (562)
T ss_dssp HHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTT--TTTCCSCSSCCEEECCSS-CCCBTTHHHHTTTTCTT
T ss_pred hccCcceEEEccCCCcccccCccCCCCceEEECCCCccccch--hhhhcccCCCCEEECCCC-CcCCcccchhhhcCCCC
Confidence 34556666666666554421 555666666666666664 333332 2556666
Q ss_pred cceeeccccccceeeCccCCCCCCCCCCCCCCCCCCCCCCCCCCeeeccCcccccccccCCCCcccC-CCccEEEEecCC
Q 037953 376 LEILLIKDMTSVERVGDESLGIANGDHGAPSSSSVNNIAFPKLKELEFSGLQEWEDWDFRKEDITIM-PQINSLSIYGCH 454 (625)
Q Consensus 376 L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~l-~~L~~L~l~~c~ 454 (625)
|+.|++++|.....+|.+. ...+++|++|+++++. +...... .+ ++|+.|++++|
T Consensus 405 L~~L~l~~N~l~~~~~~~~-----------------~~~l~~L~~L~l~~n~-l~~~~~~-----~l~~~L~~L~L~~N- 460 (562)
T 3a79_B 405 LETLDVSLNSLNSHAYDRT-----------------CAWAESILVLNLSSNM-LTGSVFR-----CLPPKVKVLDLHNN- 460 (562)
T ss_dssp CCEEECTTSCCBSCCSSCC-----------------CCCCTTCCEEECCSSC-CCGGGGS-----SCCTTCSEEECCSS-
T ss_pred CCEEECCCCcCCCccChhh-----------------hcCcccCCEEECCCCC-CCcchhh-----hhcCcCCEEECCCC-
Confidence 6666666655222244332 4567889999998874 2221111 34 68999999995
Q ss_pred CCCcCCcCCCCCCCCCEEEEecCcchhhcccccccccCCCCceEEecCCCC
Q 037953 455 KLKSLPDQLLQSSTLKTLRINRCRVLEEHFKKDRSKISHIPDIQIYERGPG 505 (625)
Q Consensus 455 ~l~~lp~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~l~~l~~l~~~~~~~~ 505 (625)
.++.+|..+..+++|++|++++|. ++.+|...+..+.++..+.+.++...
T Consensus 461 ~l~~ip~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~L~~L~l~~N~~~ 510 (562)
T 3a79_B 461 RIMSIPKDVTHLQALQELNVASNQ-LKSVPDGVFDRLTSLQYIWLHDNPWD 510 (562)
T ss_dssp CCCCCCTTTTSSCCCSEEECCSSC-CCCCCTTSTTTCTTCCCEECCSCCBC
T ss_pred cCcccChhhcCCCCCCEEECCCCC-CCCCCHHHHhcCCCCCEEEecCCCcC
Confidence 788999988889999999999985 55676333666777777777776544
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
Probab=99.94 E-value=3.3e-26 Score=245.98 Aligned_cols=319 Identities=19% Similarity=0.200 Sum_probs=242.3
Q ss_pred CCceEEEEEEcCCCCcchhhhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhhhcc
Q 037953 71 PEKLRHLMLVLGYEAPSLVSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEILNG 150 (625)
Q Consensus 71 ~~~lr~L~l~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp~~ 150 (625)
..+++.|++.++.+..+|. +..+++|++|++++|. ...+| . +.++++|++|+++ +|.+..++.
T Consensus 45 l~~l~~L~l~~~~i~~l~~-~~~l~~L~~L~Ls~n~---l~~~~---~-~~~l~~L~~L~l~--------~n~l~~~~~- 107 (466)
T 1o6v_A 45 LDQVTTLQADRLGIKSIDG-VEYLNNLTQINFSNNQ---LTDIT---P-LKNLTKLVDILMN--------NNQIADITP- 107 (466)
T ss_dssp HHTCCEEECCSSCCCCCTT-GGGCTTCCEEECCSSC---CCCCG---G-GTTCTTCCEEECC--------SSCCCCCGG-
T ss_pred hccccEEecCCCCCccCcc-hhhhcCCCEEECCCCc---cCCch---h-hhccccCCEEECC--------CCccccChh-
Confidence 4689999999998877774 7889999999999976 34445 4 8999999999999 888887776
Q ss_pred cccccccceecC-CC-CCCCchhhcCCCCCceEeecCCCCCCccccccccccccceEEecCcccccccccCCCccccccC
Q 037953 151 VEKLIHLRYLKL-NL-VGDLPEKCCELLNLQTLELENSSHFKRFPQGIGKLINLRHLIFTEDLLEYMPKGIEKLTSLRTL 228 (625)
Q Consensus 151 ~~~L~~L~~L~L-~~-l~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~l~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L 228 (625)
++++++|++|++ ++ +..+|. +.++++|++|++++|. +..+| .++++++|++|++++ .+..++ .++++++|+.|
T Consensus 108 ~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~-l~~~~-~~~~l~~L~~L~l~~-~~~~~~-~~~~l~~L~~L 182 (466)
T 1o6v_A 108 LANLTNLTGLTLFNNQITDIDP-LKNLTNLNRLELSSNT-ISDIS-ALSGLTSLQQLSFGN-QVTDLK-PLANLTTLERL 182 (466)
T ss_dssp GTTCTTCCEEECCSSCCCCCGG-GTTCTTCSEEEEEEEE-ECCCG-GGTTCTTCSEEEEEE-SCCCCG-GGTTCTTCCEE
T ss_pred hcCCCCCCEEECCCCCCCCChH-HcCCCCCCEEECCCCc-cCCCh-hhccCCcccEeecCC-cccCch-hhccCCCCCEE
Confidence 999999999999 44 888875 9999999999999998 88876 489999999999963 444544 37788888888
Q ss_pred CceEecCCCCcCCCcccChhccccccccccceEEeccCCCCChhHHHHhccCCCCCCCeEEEEEecccccccCCcccccc
Q 037953 229 SEFVVASGGGRYGSEACKLEGLRHLNHLRGSLKVRGLGNVADVDEVKNAHLEKKKNLVRLILRFKDIDKAVKRWPEAISN 308 (625)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 308 (625)
++..+.... +..+..+++|+ .|.+.++.- ... . .+..+++|+.|++++|.++
T Consensus 183 ~l~~n~l~~---------~~~l~~l~~L~-~L~l~~n~l-~~~---~--~~~~l~~L~~L~l~~n~l~------------ 234 (466)
T 1o6v_A 183 DISSNKVSD---------ISVLAKLTNLE-SLIATNNQI-SDI---T--PLGILTNLDELSLNGNQLK------------ 234 (466)
T ss_dssp ECCSSCCCC---------CGGGGGCTTCS-EEECCSSCC-CCC---G--GGGGCTTCCEEECCSSCCC------------
T ss_pred ECcCCcCCC---------ChhhccCCCCC-EEEecCCcc-ccc---c--cccccCCCCEEECCCCCcc------------
Confidence 876554333 23456666676 777776432 221 1 1567889999999987532
Q ss_pred cchhhHHHHhhcCCCCCCCcEEEEeccCCCcccCCchhhcccccccEEEEeCCCCCCCCCCCCCCCCcceeeccccccce
Q 037953 309 ENAAKHEAICEALWPPPNLESLEIAGFRGRKMMLSTNWMASLNMLKKLRLLNCPTCEIMPPLGQLPSLEILLIKDMTSVE 388 (625)
Q Consensus 309 ~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~p~~l~~l~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~~~~l~ 388 (625)
. ...+..+++|+.|++++|..... +. +..+++|+.|++++|. +..++.+..+++|+.|++++|. ++
T Consensus 235 -------~-~~~l~~l~~L~~L~l~~n~l~~~---~~-~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~L~~n~-l~ 300 (466)
T 1o6v_A 235 -------D-IGTLASLTNLTDLDLANNQISNL---AP-LSGLTKLTELKLGANQ-ISNISPLAGLTALTNLELNENQ-LE 300 (466)
T ss_dssp -------C-CGGGGGCTTCSEEECCSSCCCCC---GG-GTTCTTCSEEECCSSC-CCCCGGGTTCTTCSEEECCSSC-CS
T ss_pred -------c-chhhhcCCCCCEEECCCCccccc---hh-hhcCCCCCEEECCCCc-cCccccccCCCccCeEEcCCCc-cc
Confidence 0 13456788999999999887775 43 7788999999999864 5556668889999999999876 44
Q ss_pred eeCccCCCCCCCCCCCCCCCCCCCCCCCCCCeeeccCcccccccccCCCCcccCCCccEEEEecCCCCCcCCcCCCCCCC
Q 037953 389 RVGDESLGIANGDHGAPSSSSVNNIAFPKLKELEFSGLQEWEDWDFRKEDITIMPQINSLSIYGCHKLKSLPDQLLQSST 468 (625)
Q Consensus 389 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~ 468 (625)
.++. ...+++|+.|+++++. +..+.. +..+++|+.|++++| .++.++ .+..+++
T Consensus 301 ~~~~-------------------~~~l~~L~~L~L~~n~-l~~~~~----~~~l~~L~~L~l~~n-~l~~~~-~l~~l~~ 354 (466)
T 1o6v_A 301 DISP-------------------ISNLKNLTYLTLYFNN-ISDISP----VSSLTKLQRLFFYNN-KVSDVS-SLANLTN 354 (466)
T ss_dssp CCGG-------------------GGGCTTCSEEECCSSC-CSCCGG----GGGCTTCCEEECCSS-CCCCCG-GGTTCTT
T ss_pred Cchh-------------------hcCCCCCCEEECcCCc-CCCchh----hccCccCCEeECCCC-ccCCch-hhccCCC
Confidence 4432 4678899999999874 333322 337899999999986 677774 5677899
Q ss_pred CCEEEEecCcc
Q 037953 469 LKTLRINRCRV 479 (625)
Q Consensus 469 L~~L~l~~c~~ 479 (625)
|+.|++++|+.
T Consensus 355 L~~L~l~~n~l 365 (466)
T 1o6v_A 355 INWLSAGHNQI 365 (466)
T ss_dssp CCEEECCSSCC
T ss_pred CCEEeCCCCcc
Confidence 99999998865
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=4.1e-26 Score=250.74 Aligned_cols=193 Identities=18% Similarity=0.134 Sum_probs=145.0
Q ss_pred EEEEcCCCCcchhhhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhhh-ccccccc
Q 037953 77 LMLVLGYEAPSLVSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEIL-NGVEKLI 155 (625)
Q Consensus 77 L~l~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp-~~~~~L~ 155 (625)
.+.+++.+..+|..+. ++|++|++++|. +....| ..|+++++|++|+|+ +|.+..++ ..|++++
T Consensus 10 c~~~~~~l~~ip~~~~--~~L~~L~Ls~n~--l~~~~~---~~~~~l~~L~~L~Ls--------~n~i~~~~~~~~~~l~ 74 (549)
T 2z81_A 10 CDGRSRSFTSIPSGLT--AAMKSLDLSFNK--ITYIGH---GDLRACANLQVLILK--------SSRINTIEGDAFYSLG 74 (549)
T ss_dssp EECTTSCCSSCCSCCC--TTCCEEECCSSC--CCEECS---STTSSCTTCCEEECT--------TSCCCEECTTTTTTCT
T ss_pred EECCCCccccccccCC--CCccEEECcCCc--cCccCh---hhhhcCCcccEEECC--------CCCcCccChhhccccc
Confidence 3455667788887654 899999999975 556667 789999999999999 88877775 6799999
Q ss_pred ccceecC--CCCCCCchh-hcCCCCCceEeecCCCCCCc--cccccccccccceEEecCcc-ccccc-ccCCCccccccC
Q 037953 156 HLRYLKL--NLVGDLPEK-CCELLNLQTLELENSSHFKR--FPQGIGKLINLRHLIFTEDL-LEYMP-KGIEKLTSLRTL 228 (625)
Q Consensus 156 ~L~~L~L--~~l~~lP~~-i~~L~~L~~L~L~~~~~l~~--lp~~l~~L~~L~~L~l~~~~-l~~lp-~~i~~L~~L~~L 228 (625)
+|++|+| |.+..+|.. ++++++|++|++++|. +.. .|..++++++|++|+++.|. ++.+| ..++++++|++|
T Consensus 75 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L 153 (549)
T 2z81_A 75 SLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNP-YQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNEL 153 (549)
T ss_dssp TCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEE
T ss_pred cCCEEECCCCccCccCHHHhccCCCCcEEECCCCc-ccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCee
Confidence 9999999 447777765 9999999999999998 774 56789999999999996665 77887 468999999999
Q ss_pred CceEecCCCCcCCCcccChhccccccccccceEEeccCCCCChhHHHHhccCCCCCCCeEEEEEecccc
Q 037953 229 SEFVVASGGGRYGSEACKLEGLRHLNHLRGSLKVRGLGNVADVDEVKNAHLEKKKNLVRLILRFKDIDK 297 (625)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 297 (625)
++..+.... .....+..+++|+ .|.+..... ..... ..+..+++|+.|++++|.+++
T Consensus 154 ~L~~n~l~~-------~~~~~l~~l~~L~-~L~l~~n~~-~~~~~---~~~~~l~~L~~L~L~~n~l~~ 210 (549)
T 2z81_A 154 EIKALSLRN-------YQSQSLKSIRDIH-HLTLHLSES-AFLLE---IFADILSSVRYLELRDTNLAR 210 (549)
T ss_dssp EEEETTCCE-------ECTTTTTTCSEEE-EEEEECSBS-TTHHH---HHHHSTTTBSEEEEESCBCTT
T ss_pred eccCCcccc-------cChhhhhccccCc-eEecccCcc-cccch---hhHhhcccccEEEccCCcccc
Confidence 988766543 2233444455555 666655332 22222 123456788888888776543
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=2.9e-25 Score=250.44 Aligned_cols=379 Identities=17% Similarity=0.098 Sum_probs=219.6
Q ss_pred CCCceEEEEEEcCCCCcc-hhhhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhhh
Q 037953 70 CPEKLRHLMLVLGYEAPS-LVSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEIL 148 (625)
Q Consensus 70 ~~~~lr~L~l~~~~~~~~-~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp 148 (625)
..+++++|++++|.+..+ |..+.++++|++|++++|. +....+ ..|+++++|++|+|+ +|.+..+|
T Consensus 47 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~--l~~l~~---~~~~~l~~L~~L~L~--------~n~l~~~~ 113 (680)
T 1ziw_A 47 RYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE--LSQLSD---KTFAFCTNLTELHLM--------SNSIQKIK 113 (680)
T ss_dssp GGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSC--CCCCCT---TTTTTCTTCSEEECC--------SSCCCCCC
T ss_pred CCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCc--cCccCh---hhhccCCCCCEEECC--------CCccCccC
Confidence 357899999999988655 6678899999999999975 444444 579999999999999 88887776
Q ss_pred -cccccccccceecC--CCCCC-CchhhcCCCCCceEeecCCCCCCccccc-c--ccccccceEEecCcccccccc-cCC
Q 037953 149 -NGVEKLIHLRYLKL--NLVGD-LPEKCCELLNLQTLELENSSHFKRFPQG-I--GKLINLRHLIFTEDLLEYMPK-GIE 220 (625)
Q Consensus 149 -~~~~~L~~L~~L~L--~~l~~-lP~~i~~L~~L~~L~L~~~~~l~~lp~~-l--~~L~~L~~L~l~~~~l~~lp~-~i~ 220 (625)
..|+++++|++|++ |.+.. .|..++++++|++|++++|. +..++.. + ..+++|++|+++.|.++.++. .++
T Consensus 114 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~ 192 (680)
T 1ziw_A 114 NNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNK-IQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFH 192 (680)
T ss_dssp SCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSC-CCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGG
T ss_pred hhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCc-ccccCHHHhhccccccccEEECCCCcccccChhhhh
Confidence 56999999999999 44544 45678999999999999998 7776654 3 356899999998787776653 355
Q ss_pred CccccccCC---------------------------ceEecCCCCcCCCcccChhccccccc--cccceEEeccCCCCCh
Q 037953 221 KLTSLRTLS---------------------------EFVVASGGGRYGSEACKLEGLRHLNH--LRGSLKVRGLGNVADV 271 (625)
Q Consensus 221 ~L~~L~~L~---------------------------~~~~~~~~~~~~~~~~~l~~l~~L~~--L~~~L~l~~~~~~~~~ 271 (625)
.+.+|+.|. +..+.... .....+.+++. |+ .|+++++. +
T Consensus 193 ~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~-------~~~~~~~~l~~~~L~-~L~Ls~n~----l 260 (680)
T 1ziw_A 193 AIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLST-------TSNTTFLGLKWTNLT-MLDLSYNN----L 260 (680)
T ss_dssp GSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCE-------ECTTTTGGGGGSCCC-EEECTTSC----C
T ss_pred hhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccc-------cChhHhhccCcCCCC-EEECCCCC----c
Confidence 554444332 22111111 11122333332 55 56665532 2
Q ss_pred hHHHHhccCCCCCCCeEEEEEecccccccCCcccccccc---h--------hhHHHHhh----cCCCCCCCcEEEEeccC
Q 037953 272 DEVKNAHLEKKKNLVRLILRFKDIDKAVKRWPEAISNEN---A--------AKHEAICE----ALWPPPNLESLEIAGFR 336 (625)
Q Consensus 272 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~---~--------~~~~~~~~----~l~~~~~L~~L~L~~~~ 336 (625)
....+..+..+++|+.|++++|.+.+.....-....... . .....++. .+..+++|+.|++++|.
T Consensus 261 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~ 340 (680)
T 1ziw_A 261 NVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDND 340 (680)
T ss_dssp CEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCC
T ss_pred CccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCc
Confidence 222334566777788887777754432221111000000 0 00001111 45567777777777776
Q ss_pred CCcccCCchhhcccccccEEEEeCCCC-CC--------------------------CC-C-CCCCCCCcceeeccccccc
Q 037953 337 GRKMMLSTNWMASLNMLKKLRLLNCPT-CE--------------------------IM-P-PLGQLPSLEILLIKDMTSV 387 (625)
Q Consensus 337 ~~~~~~~p~~l~~l~~L~~L~L~~c~~-l~--------------------------~l-~-~l~~l~~L~~L~L~~~~~l 387 (625)
..... |.++..+++|++|++++|.. .. .+ | .++.+++|+.|++++|...
T Consensus 341 l~~~~--~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 418 (680)
T 1ziw_A 341 IPGIK--SNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIG 418 (680)
T ss_dssp BCCCC--TTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCE
T ss_pred cCCCC--hhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCc
Confidence 55542 45566777777777766431 11 11 1 2445556666666555433
Q ss_pred eeeC-ccCCCCCCCCCCCCCCCC------CCCCCCCCCCeeeccCcccccccccCCCCcccCCCccEEEEecCCCCCcCC
Q 037953 388 ERVG-DESLGIANGDHGAPSSSS------VNNIAFPKLKELEFSGLQEWEDWDFRKEDITIMPQINSLSIYGCHKLKSLP 460 (625)
Q Consensus 388 ~~l~-~~~~~~~~~~~~~~~~~~------~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp 460 (625)
+.++ ..+.+...+..+.++... ..+..+++|+.|+++++. +..+...+..+..+++|+.|++++| .++.+|
T Consensus 419 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~p~~~~~l~~L~~L~Ls~N-~l~~i~ 496 (680)
T 1ziw_A 419 QELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVA-LKNVDSSPSPFQPLRNLTILDLSNN-NIANIN 496 (680)
T ss_dssp EECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSC-CBCTTCSSCTTTTCTTCCEEECCSS-CCCCCC
T ss_pred cccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhcccc-ccccccCCcccccCCCCCEEECCCC-CCCcCC
Confidence 3333 222233333333332211 123334555555554432 1111111222446677777777774 455555
Q ss_pred cC-CCCCCCCCEEEEecCc
Q 037953 461 DQ-LLQSSTLKTLRINRCR 478 (625)
Q Consensus 461 ~~-~~~l~~L~~L~l~~c~ 478 (625)
.. +..+++|++|++++|.
T Consensus 497 ~~~~~~l~~L~~L~Ls~N~ 515 (680)
T 1ziw_A 497 DDMLEGLEKLEILDLQHNN 515 (680)
T ss_dssp TTTTTTCTTCCEEECCSSC
T ss_pred hhhhccccccCEEeCCCCC
Confidence 43 5566777777777764
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=2.6e-26 Score=246.23 Aligned_cols=362 Identities=14% Similarity=0.103 Sum_probs=239.8
Q ss_pred CCCceEEEEEEcCCCCcc-hhhhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhh-
Q 037953 70 CPEKLRHLMLVLGYEAPS-LVSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEI- 147 (625)
Q Consensus 70 ~~~~lr~L~l~~~~~~~~-~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~l- 147 (625)
.++++++|++++|.+..+ |..+.++++|++|++++|.. .....| ..|.++++|++|+|+ +|.+..+
T Consensus 28 l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~-~~~i~~---~~~~~l~~L~~L~Ls--------~n~l~~~~ 95 (455)
T 3v47_A 28 LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTP-GLVIRN---NTFRGLSSLIILKLD--------YNQFLQLE 95 (455)
T ss_dssp CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCST-TCEECT---TTTTTCTTCCEEECT--------TCTTCEEC
T ss_pred CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcc-cceECc---ccccccccCCEEeCC--------CCccCccC
Confidence 568899999999999766 67889999999999999752 123345 779999999999999 8887765
Q ss_pred hcccccccccceecC--CCCCC-Cchh--hcCCCCCceEeecCCCCCCcc-ccc-cccccccceEEecCccccccc-ccC
Q 037953 148 LNGVEKLIHLRYLKL--NLVGD-LPEK--CCELLNLQTLELENSSHFKRF-PQG-IGKLINLRHLIFTEDLLEYMP-KGI 219 (625)
Q Consensus 148 p~~~~~L~~L~~L~L--~~l~~-lP~~--i~~L~~L~~L~L~~~~~l~~l-p~~-l~~L~~L~~L~l~~~~l~~lp-~~i 219 (625)
|..|+++++|++|+| |.+.. +|.. +.++++|++|++++|. +..+ |.. ++++++|++|++++|.+..++ ..+
T Consensus 96 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l 174 (455)
T 3v47_A 96 TGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNN-IKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDL 174 (455)
T ss_dssp TTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSB-CCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTS
T ss_pred hhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCc-cCccCcccccCCCCcccEEeCCCCcccccChhhh
Confidence 778999999999999 44654 4555 8999999999999998 7666 555 889999999999888877654 445
Q ss_pred CCc--cccccCCceEecCCCCcCCCcccC---hhccccccccccceEEeccCCCCChhHHHHhcc---CCCCCCCeEEEE
Q 037953 220 EKL--TSLRTLSEFVVASGGGRYGSEACK---LEGLRHLNHLRGSLKVRGLGNVADVDEVKNAHL---EKKKNLVRLILR 291 (625)
Q Consensus 220 ~~L--~~L~~L~~~~~~~~~~~~~~~~~~---l~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l---~~l~~L~~L~l~ 291 (625)
..+ .+|+.|++..+...... ..... ...+..+++|+ .|+++++.- .+..+..+ ....+|+.|+++
T Consensus 175 ~~l~~~~L~~L~l~~n~l~~~~--~~~~~~~~~~~~~~~~~L~-~L~Ls~n~l----~~~~~~~~~~~~~~~~L~~L~l~ 247 (455)
T 3v47_A 175 LNFQGKHFTLLRLSSITLQDMN--EYWLGWEKCGNPFKNTSIT-TLDLSGNGF----KESMAKRFFDAIAGTKIQSLILS 247 (455)
T ss_dssp GGGTTCEEEEEECTTCBCTTCS--TTCTTHHHHCCTTTTCEEE-EEECTTSCC----CHHHHHHHHHHTTTCCEEEEECT
T ss_pred hccccccccccccccCcccccc--hhhccccccccccccceee-eEecCCCcc----cccchhhhhccccccceeeEeec
Confidence 555 45666655444333200 00000 11122345565 677666432 22222222 233678888887
Q ss_pred EecccccccCCcccccccchhhHHHHhhcCCCCCCCcEEEEeccCCCcccCCchhhcccccccEEEEeCCCCCCCCC-CC
Q 037953 292 FKDIDKAVKRWPEAISNENAAKHEAICEALWPPPNLESLEIAGFRGRKMMLSTNWMASLNMLKKLRLLNCPTCEIMP-PL 370 (625)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~p~~l~~l~~L~~L~L~~c~~l~~l~-~l 370 (625)
.+...+......... ......-.-...++|+.|++++|...... |.++..+++|+.|++++|...+..| .+
T Consensus 248 ~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 319 (455)
T 3v47_A 248 NSYNMGSSFGHTNFK------DPDNFTFKGLEASGVKTCDLSKSKIFALL--KSVFSHFTDLEQLTLAQNEINKIDDNAF 319 (455)
T ss_dssp TCTTTSCCTTCCSSC------CCCTTTTGGGTTSCCCEEECCSSCCCEEC--TTTTTTCTTCCEEECTTSCCCEECTTTT
T ss_pred cccccccccchhhhc------cCcccccccccccCceEEEecCccccccc--hhhcccCCCCCEEECCCCcccccChhHh
Confidence 663211100000000 00000000012368888998888776643 7778888899999998865444334 47
Q ss_pred CCCCCcceeeccccccceeeCccCCCCCCCCCCCCCCCCCCCCCCCCCCeeeccCcccccccccCCCCcccCCCccEEEE
Q 037953 371 GQLPSLEILLIKDMTSVERVGDESLGIANGDHGAPSSSSVNNIAFPKLKELEFSGLQEWEDWDFRKEDITIMPQINSLSI 450 (625)
Q Consensus 371 ~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~l~~L~~L~l 450 (625)
+.+++|++|++++|. ++.++... +..+++|++|+++++. +..+.. ..+..+++|++|++
T Consensus 320 ~~l~~L~~L~Ls~N~-l~~~~~~~-----------------~~~l~~L~~L~Ls~N~-l~~~~~--~~~~~l~~L~~L~L 378 (455)
T 3v47_A 320 WGLTHLLKLNLSQNF-LGSIDSRM-----------------FENLDKLEVLDLSYNH-IRALGD--QSFLGLPNLKELAL 378 (455)
T ss_dssp TTCTTCCEEECCSSC-CCEECGGG-----------------GTTCTTCCEEECCSSC-CCEECT--TTTTTCTTCCEEEC
T ss_pred cCcccCCEEECCCCc-cCCcChhH-----------------hcCcccCCEEECCCCc-ccccCh--hhccccccccEEEC
Confidence 788899999998875 55554332 5677889999888763 333321 22447888999999
Q ss_pred ecCCCCCcCCcC-CCCCCCCCEEEEecCcchh
Q 037953 451 YGCHKLKSLPDQ-LLQSSTLKTLRINRCRVLE 481 (625)
Q Consensus 451 ~~c~~l~~lp~~-~~~l~~L~~L~l~~c~~L~ 481 (625)
++| .++.+|.. +..+++|++|++++|+.-.
T Consensus 379 ~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 409 (455)
T 3v47_A 379 DTN-QLKSVPDGIFDRLTSLQKIWLHTNPWDC 409 (455)
T ss_dssp CSS-CCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CCC-ccccCCHhHhccCCcccEEEccCCCccc
Confidence 884 67777764 4678889999998887543
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.2e-25 Score=247.60 Aligned_cols=343 Identities=14% Similarity=0.067 Sum_probs=237.2
Q ss_pred CCCceEEEEEEcCCCCcch-hhhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhhh
Q 037953 70 CPEKLRHLMLVLGYEAPSL-VSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEIL 148 (625)
Q Consensus 70 ~~~~lr~L~l~~~~~~~~~-~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp 148 (625)
.++++++|++++|.+..++ ..+.++++|++|++++|. +....| +.|.++++|++|+|+ +|.+..+|
T Consensus 50 ~~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~--l~~~~~---~~~~~l~~L~~L~Ls--------~N~l~~lp 116 (562)
T 3a79_B 50 LPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNR--IRSLDF---HVFLFNQDLEYLDVS--------HNRLQNIS 116 (562)
T ss_dssp SCTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCC--CCEECT---TTTTTCTTCCEEECT--------TSCCCEEC
T ss_pred CCCCcCEEECCCCCccccChhhhccCCCccEEECCCCC--CCcCCH---HHhCCCCCCCEEECC--------CCcCCccC
Confidence 4589999999999997776 589999999999999975 556667 889999999999999 99999998
Q ss_pred cccccccccceecC--CCCCCC--chhhcCCCCCceEeecCCCCCCcccccccccccc--ceEEecCccc---ccccccC
Q 037953 149 NGVEKLIHLRYLKL--NLVGDL--PEKCCELLNLQTLELENSSHFKRFPQGIGKLINL--RHLIFTEDLL---EYMPKGI 219 (625)
Q Consensus 149 ~~~~~L~~L~~L~L--~~l~~l--P~~i~~L~~L~~L~L~~~~~l~~lp~~l~~L~~L--~~L~l~~~~l---~~lp~~i 219 (625)
.. .+++|++|++ |.+..+ |..++++++|++|++++|. +.. ..+..+++| ++|+++.|.+ ...|..+
T Consensus 117 ~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~-l~~--~~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l 191 (562)
T 3a79_B 117 CC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAK-FRQ--LDLLPVAHLHLSCILLDLVSYHIKGGETESL 191 (562)
T ss_dssp SC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSB-CCT--TTTGGGTTSCEEEEEEEESSCCCCSSSCCEE
T ss_pred cc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCc-ccc--CchhhhhhceeeEEEeecccccccccCcccc
Confidence 76 8999999999 447765 4789999999999999998 664 345666666 9999966655 2223333
Q ss_pred CC--------------------------ccccccCC--------------------------------------------
Q 037953 220 EK--------------------------LTSLRTLS-------------------------------------------- 229 (625)
Q Consensus 220 ~~--------------------------L~~L~~L~-------------------------------------------- 229 (625)
.. +++|+.|+
T Consensus 192 ~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~ 271 (562)
T 3a79_B 192 QIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQ 271 (562)
T ss_dssp EECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHH
T ss_pred cccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHH
Confidence 22 22233322
Q ss_pred -----------ceEecCCCCcCCCcccChh--ccccccccccceEEeccCCCCChhHHHHhc------------------
Q 037953 230 -----------EFVVASGGGRYGSEACKLE--GLRHLNHLRGSLKVRGLGNVADVDEVKNAH------------------ 278 (625)
Q Consensus 230 -----------~~~~~~~~~~~~~~~~~l~--~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~------------------ 278 (625)
+..+...+ ..+..+- ...+++.|+ .+.+..... ..+......
T Consensus 272 ~~~~~~L~~L~l~~n~l~~----~ip~~~~~~~~~~L~~L~-~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~ 344 (562)
T 3a79_B 272 FFWPRPVEYLNIYNLTITE----RIDREEFTYSETALKSLM-IEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFI 344 (562)
T ss_dssp HHTTSSEEEEEEEEEEECS----CCCCCCCCCCSCSCCEEE-EEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCC
T ss_pred hhhcccccEEEEeccEeec----cccchhhhcccccchhee-hhhccccee--ecChhhhhhhhccCcceEEEccCCCcc
Confidence 22222111 0111110 002222221 111111100 000000000
Q ss_pred ----cCCCCCCCeEEEEEecccccccCCcccccccchhhHHHHhhcCCCCCCCcEEEEeccCCCcccCCchhhccccccc
Q 037953 279 ----LEKKKNLVRLILRFKDIDKAVKRWPEAISNENAAKHEAICEALWPPPNLESLEIAGFRGRKMMLSTNWMASLNMLK 354 (625)
Q Consensus 279 ----l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~p~~l~~l~~L~ 354 (625)
...+++|++|++++|.++ +..+..+..+++|+.|++++|....+...|..+..+++|+
T Consensus 345 ~~~~~~~l~~L~~L~l~~n~l~------------------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~ 406 (562)
T 3a79_B 345 HMVCPPSPSSFTFLNFTQNVFT------------------DSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLE 406 (562)
T ss_dssp CCCCCSSCCCCCEEECCSSCCC------------------TTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCC
T ss_pred cccCccCCCCceEEECCCCccc------------------cchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCC
Confidence 155667777777766422 3456678889999999999998876411145678999999
Q ss_pred EEEEeCCCCCCCCC--CCCCCCCcceeeccccccceeeCccCCCCCCCCCCCCCCCCCCCCCC-CCCCeeeccCcccccc
Q 037953 355 KLRLLNCPTCEIMP--PLGQLPSLEILLIKDMTSVERVGDESLGIANGDHGAPSSSSVNNIAF-PKLKELEFSGLQEWED 431 (625)
Q Consensus 355 ~L~L~~c~~l~~l~--~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l-~~L~~L~L~~~~~l~~ 431 (625)
.|++++|.....+| .+..+++|+.|++++|...+.++ ..+ ++|+.|+++++ .++.
T Consensus 407 ~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~---------------------~~l~~~L~~L~L~~N-~l~~ 464 (562)
T 3a79_B 407 TLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVF---------------------RCLPPKVKVLDLHNN-RIMS 464 (562)
T ss_dssp EEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGG---------------------SSCCTTCSEEECCSS-CCCC
T ss_pred EEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchh---------------------hhhcCcCCEEECCCC-cCcc
Confidence 99999976555466 37889999999999987322222 233 69999999987 5665
Q ss_pred cccCCCCcccCCCccEEEEecCCCCCcCCcC-CCCCCCCCEEEEecCcchh
Q 037953 432 WDFRKEDITIMPQINSLSIYGCHKLKSLPDQ-LLQSSTLKTLRINRCRVLE 481 (625)
Q Consensus 432 ~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~-~~~l~~L~~L~l~~c~~L~ 481 (625)
++.. +..+++|++|++++| .++.+|.. +..+++|+.|++++|+.--
T Consensus 465 ip~~---~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~l~~N~~~c 511 (562)
T 3a79_B 465 IPKD---VTHLQALQELNVASN-QLKSVPDGVFDRLTSLQYIWLHDNPWDC 511 (562)
T ss_dssp CCTT---TTSSCCCSEEECCSS-CCCCCCTTSTTTCTTCCCEECCSCCBCC
T ss_pred cChh---hcCCCCCCEEECCCC-CCCCCCHHHHhcCCCCCEEEecCCCcCC
Confidence 5433 337999999999995 78899987 7889999999999998643
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
Probab=99.93 E-value=9.9e-26 Score=242.30 Aligned_cols=321 Identities=21% Similarity=0.240 Sum_probs=253.1
Q ss_pred CCCCceEEEEEEcCCCCcchhhhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhhh
Q 037953 69 TCPEKLRHLMLVLGYEAPSLVSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEIL 148 (625)
Q Consensus 69 ~~~~~lr~L~l~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp 148 (625)
...+++++|++++|.+..+++ +.++++|++|++++|. ...++ . ++++++|++|+++ +|.+..+|
T Consensus 65 ~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~---l~~~~---~-~~~l~~L~~L~L~--------~n~l~~~~ 128 (466)
T 1o6v_A 65 EYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQ---IADIT---P-LANLTNLTGLTLF--------NNQITDID 128 (466)
T ss_dssp GGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC---CCCCG---G-GTTCTTCCEEECC--------SSCCCCCG
T ss_pred hhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCc---cccCh---h-hcCCCCCCEEECC--------CCCCCCCh
Confidence 346799999999999988877 8999999999999976 34444 4 8999999999999 88888887
Q ss_pred cccccccccceecC--CCCCCCchhhcCCCCCceEeecCCCCCCccccccccccccceEEecCcccccccccCCCccccc
Q 037953 149 NGVEKLIHLRYLKL--NLVGDLPEKCCELLNLQTLELENSSHFKRFPQGIGKLINLRHLIFTEDLLEYMPKGIEKLTSLR 226 (625)
Q Consensus 149 ~~~~~L~~L~~L~L--~~l~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~l~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~ 226 (625)
. +.++++|++|++ |.+..+| .++++++|++|++++ . +..++. ++++++|++|++++|.+..++ .+..+++|+
T Consensus 129 ~-~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~~-~-~~~~~~-~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~ 202 (466)
T 1o6v_A 129 P-LKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLSFGN-Q-VTDLKP-LANLTTLERLDISSNKVSDIS-VLAKLTNLE 202 (466)
T ss_dssp G-GTTCTTCSEEEEEEEEECCCG-GGTTCTTCSEEEEEE-S-CCCCGG-GTTCTTCCEEECCSSCCCCCG-GGGGCTTCS
T ss_pred H-HcCCCCCCEEECCCCccCCCh-hhccCCcccEeecCC-c-ccCchh-hccCCCCCEEECcCCcCCCCh-hhccCCCCC
Confidence 5 999999999999 4488886 599999999999974 3 555654 999999999999888888875 478888888
Q ss_pred cCCceEecCCCCcCCCcccChhccccccccccceEEeccCCCCChhHHHHhccCCCCCCCeEEEEEecccccccCCcccc
Q 037953 227 TLSEFVVASGGGRYGSEACKLEGLRHLNHLRGSLKVRGLGNVADVDEVKNAHLEKKKNLVRLILRFKDIDKAVKRWPEAI 306 (625)
Q Consensus 227 ~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~ 306 (625)
.|++..+.... +..+..+++|+ .|.+.++.- ... ..+..+++|+.|++++|.++
T Consensus 203 ~L~l~~n~l~~---------~~~~~~l~~L~-~L~l~~n~l-~~~-----~~l~~l~~L~~L~l~~n~l~---------- 256 (466)
T 1o6v_A 203 SLIATNNQISD---------ITPLGILTNLD-ELSLNGNQL-KDI-----GTLASLTNLTDLDLANNQIS---------- 256 (466)
T ss_dssp EEECCSSCCCC---------CGGGGGCTTCC-EEECCSSCC-CCC-----GGGGGCTTCSEEECCSSCCC----------
T ss_pred EEEecCCcccc---------cccccccCCCC-EEECCCCCc-ccc-----hhhhcCCCCCEEECCCCccc----------
Confidence 88876655443 11245566666 777776432 222 34778899999999988532
Q ss_pred cccchhhHHHHhhcCCCCCCCcEEEEeccCCCcccCCchhhcccccccEEEEeCCCCCCCCCCCCCCCCcceeecccccc
Q 037953 307 SNENAAKHEAICEALWPPPNLESLEIAGFRGRKMMLSTNWMASLNMLKKLRLLNCPTCEIMPPLGQLPSLEILLIKDMTS 386 (625)
Q Consensus 307 ~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~p~~l~~l~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~~~~ 386 (625)
..+ .+..+++|+.|++++|..... +. +..+++|+.|++++|. +..++.++.+++|+.|++++|.
T Consensus 257 ---------~~~-~~~~l~~L~~L~l~~n~l~~~---~~-~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~L~~n~- 320 (466)
T 1o6v_A 257 ---------NLA-PLSGLTKLTELKLGANQISNI---SP-LAGLTALTNLELNENQ-LEDISPISNLKNLTYLTLYFNN- 320 (466)
T ss_dssp ---------CCG-GGTTCTTCSEEECCSSCCCCC---GG-GTTCTTCSEEECCSSC-CSCCGGGGGCTTCSEEECCSSC-
T ss_pred ---------cch-hhhcCCCCCEEECCCCccCcc---cc-ccCCCccCeEEcCCCc-ccCchhhcCCCCCCEEECcCCc-
Confidence 111 267789999999999988776 54 7899999999999964 5666668899999999999986
Q ss_pred ceeeCccCCCCCCCCCCCCCCCCCCCCCCCCCCeeeccCcccccccccCCCCcccCCCccEEEEecCCCCCcCCcCCCCC
Q 037953 387 VERVGDESLGIANGDHGAPSSSSVNNIAFPKLKELEFSGLQEWEDWDFRKEDITIMPQINSLSIYGCHKLKSLPDQLLQS 466 (625)
Q Consensus 387 l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l 466 (625)
+..++. ...+++|+.|+++++ .+..+. .+..+++|+.|++++| .+..+++ +..+
T Consensus 321 l~~~~~-------------------~~~l~~L~~L~l~~n-~l~~~~----~l~~l~~L~~L~l~~n-~l~~~~~-~~~l 374 (466)
T 1o6v_A 321 ISDISP-------------------VSSLTKLQRLFFYNN-KVSDVS----SLANLTNINWLSAGHN-QISDLTP-LANL 374 (466)
T ss_dssp CSCCGG-------------------GGGCTTCCEEECCSS-CCCCCG----GGTTCTTCCEEECCSS-CCCBCGG-GTTC
T ss_pred CCCchh-------------------hccCccCCEeECCCC-ccCCch----hhccCCCCCEEeCCCC-ccCccch-hhcC
Confidence 444332 467899999999987 444442 2447999999999997 4666555 7789
Q ss_pred CCCCEEEEecCcc
Q 037953 467 STLKTLRINRCRV 479 (625)
Q Consensus 467 ~~L~~L~l~~c~~ 479 (625)
++|+.|++++|+.
T Consensus 375 ~~L~~L~l~~n~~ 387 (466)
T 1o6v_A 375 TRITQLGLNDQAW 387 (466)
T ss_dssp TTCCEEECCCEEE
T ss_pred CCCCEEeccCCcc
Confidence 9999999999964
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
Probab=99.93 E-value=6.3e-26 Score=234.16 Aligned_cols=300 Identities=19% Similarity=0.187 Sum_probs=185.0
Q ss_pred CCceEEEEEEcCCCCcchhhhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhhhcc
Q 037953 71 PEKLRHLMLVLGYEAPSLVSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEILNG 150 (625)
Q Consensus 71 ~~~lr~L~l~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp~~ 150 (625)
.+++++|++.++.+..++. +..+++|++|++++|. ...+| . +.++++|++|+++ +|.+..+| .
T Consensus 43 l~~L~~L~l~~~~i~~~~~-~~~~~~L~~L~l~~n~---i~~~~---~-~~~l~~L~~L~L~--------~n~i~~~~-~ 105 (347)
T 4fmz_A 43 LESITKLVVAGEKVASIQG-IEYLTNLEYLNLNGNQ---ITDIS---P-LSNLVKLTNLYIG--------TNKITDIS-A 105 (347)
T ss_dssp HTTCSEEECCSSCCCCCTT-GGGCTTCCEEECCSSC---CCCCG---G-GTTCTTCCEEECC--------SSCCCCCG-G
T ss_pred cccccEEEEeCCccccchh-hhhcCCccEEEccCCc---cccch---h-hhcCCcCCEEEcc--------CCcccCch-H
Confidence 3456666666666655543 5566666666666654 22333 3 6666666666666 55555554 4
Q ss_pred cccccccceecC-CC-CCCCchhhcCCCCCceEeecCCCCCCccccccccccccceEEecCcccccccccCCCccccccC
Q 037953 151 VEKLIHLRYLKL-NL-VGDLPEKCCELLNLQTLELENSSHFKRFPQGIGKLINLRHLIFTEDLLEYMPKGIEKLTSLRTL 228 (625)
Q Consensus 151 ~~~L~~L~~L~L-~~-l~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~l~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L 228 (625)
+.++++|++|++ .+ +..+|. +.++++|++|++++|..+..++ .+..+++|++|+++++.+..++. ++.+++|+.|
T Consensus 106 ~~~l~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L 182 (347)
T 4fmz_A 106 LQNLTNLRELYLNEDNISDISP-LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSL 182 (347)
T ss_dssp GTTCTTCSEEECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEE
T ss_pred HcCCCcCCEEECcCCcccCchh-hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh-hccCCCCCEE
Confidence 666666666666 33 555654 6666666666666665344433 36666666666665555555443 4444444444
Q ss_pred CceEecCCCCcCCCcccChhccccccccccceEEeccCCCCChhHHHHhccCCCCCCCeEEEEEecccccccCCcccccc
Q 037953 229 SEFVVASGGGRYGSEACKLEGLRHLNHLRGSLKVRGLGNVADVDEVKNAHLEKKKNLVRLILRFKDIDKAVKRWPEAISN 308 (625)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 308 (625)
++..+... ... .+..+++|+.|++++|.+.
T Consensus 183 ~l~~n~l~---------------------------------~~~-----~~~~l~~L~~L~l~~n~l~------------ 212 (347)
T 4fmz_A 183 SLNYNQIE---------------------------------DIS-----PLASLTSLHYFTAYVNQIT------------ 212 (347)
T ss_dssp ECTTSCCC---------------------------------CCG-----GGGGCTTCCEEECCSSCCC------------
T ss_pred EccCCccc---------------------------------ccc-----cccCCCccceeecccCCCC------------
Confidence 43222111 110 1445566667776665421
Q ss_pred cchhhHHHHhhcCCCCCCCcEEEEeccCCCcccCCchhhcccccccEEEEeCCCCCCCCCCCCCCCCcceeeccccccce
Q 037953 309 ENAAKHEAICEALWPPPNLESLEIAGFRGRKMMLSTNWMASLNMLKKLRLLNCPTCEIMPPLGQLPSLEILLIKDMTSVE 388 (625)
Q Consensus 309 ~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~p~~l~~l~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~~~~l~ 388 (625)
... .+..+++|+.|++++|..... +. +..+++|++|++++| .+..++.+..+++|+.|++++|. ++
T Consensus 213 -------~~~-~~~~~~~L~~L~l~~n~l~~~---~~-~~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~l~~n~-l~ 278 (347)
T 4fmz_A 213 -------DIT-PVANMTRLNSLKIGNNKITDL---SP-LANLSQLTWLEIGTN-QISDINAVKDLTKLKMLNVGSNQ-IS 278 (347)
T ss_dssp -------CCG-GGGGCTTCCEEECCSSCCCCC---GG-GTTCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSSC-CC
T ss_pred -------CCc-hhhcCCcCCEEEccCCccCCC---cc-hhcCCCCCEEECCCC-ccCCChhHhcCCCcCEEEccCCc-cC
Confidence 011 145677888888888877765 44 778888888888886 45566777888889999998875 55
Q ss_pred eeCccCCCCCCCCCCCCCCCCCCCCCCCCCCeeeccCcccccccccCCCCcccCCCccEEEEecCCCCCcCCcCCCCCCC
Q 037953 389 RVGDESLGIANGDHGAPSSSSVNNIAFPKLKELEFSGLQEWEDWDFRKEDITIMPQINSLSIYGCHKLKSLPDQLLQSST 468 (625)
Q Consensus 389 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~ 468 (625)
.++. ...+++|+.|++++|. +...... .+..+++|++|++++|+ ++.+++ +..+++
T Consensus 279 ~~~~-------------------~~~l~~L~~L~L~~n~-l~~~~~~--~l~~l~~L~~L~L~~n~-l~~~~~-~~~l~~ 334 (347)
T 4fmz_A 279 DISV-------------------LNNLSQLNSLFLNNNQ-LGNEDME--VIGGLTNLTTLFLSQNH-ITDIRP-LASLSK 334 (347)
T ss_dssp CCGG-------------------GGGCTTCSEEECCSSC-CCGGGHH--HHHTCTTCSEEECCSSS-CCCCGG-GGGCTT
T ss_pred CChh-------------------hcCCCCCCEEECcCCc-CCCcChh--HhhccccCCEEEccCCc-cccccC-hhhhhc
Confidence 4431 5677889999988874 2222211 13368899999999974 666655 667899
Q ss_pred CCEEEEecCc
Q 037953 469 LKTLRINRCR 478 (625)
Q Consensus 469 L~~L~l~~c~ 478 (625)
|++|++++|+
T Consensus 335 L~~L~l~~N~ 344 (347)
T 4fmz_A 335 MDSADFANQV 344 (347)
T ss_dssp CSEESSSCC-
T ss_pred cceeehhhhc
Confidence 9999999886
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=6.8e-25 Score=252.71 Aligned_cols=279 Identities=20% Similarity=0.155 Sum_probs=191.5
Q ss_pred cCCCCceEEEEEEcCCC-Ccc-hhhhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchh
Q 037953 68 NTCPEKLRHLMLVLGYE-APS-LVSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTN 145 (625)
Q Consensus 68 ~~~~~~lr~L~l~~~~~-~~~-~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~ 145 (625)
-....+++.|++++|.. ..+ |..+.++++|++|+|++|. +....| ..|+++++|++|+|+ +|.+.
T Consensus 44 ~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~--l~~~~p---~~~~~l~~L~~L~Ls--------~n~l~ 110 (844)
T 3j0a_A 44 FPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSK--IYFLHP---DAFQGLFHLFELRLY--------FCGLS 110 (844)
T ss_dssp CSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCC--CCEECT---TSSCSCSSCCCEECT--------TCCCS
T ss_pred CcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCc--CcccCH---hHccCCcccCEeeCc--------CCCCC
Confidence 34567899999999954 566 6789999999999999975 556667 889999999999999 88865
Q ss_pred h-hhcc--cccccccceecC--CCCCCC--chhhcCCCCCceEeecCCCCCCccccccccc--cccceEEecCcccc-cc
Q 037953 146 E-ILNG--VEKLIHLRYLKL--NLVGDL--PEKCCELLNLQTLELENSSHFKRFPQGIGKL--INLRHLIFTEDLLE-YM 215 (625)
Q Consensus 146 ~-lp~~--~~~L~~L~~L~L--~~l~~l--P~~i~~L~~L~~L~L~~~~~l~~lp~~l~~L--~~L~~L~l~~~~l~-~l 215 (625)
. +|.. |+++++|++|+| |.+..+ +..++++++|++|++++|..-...|..++.+ ++|+.|+++.|.+. ..
T Consensus 111 ~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~ 190 (844)
T 3j0a_A 111 DAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRV 190 (844)
T ss_dssp SCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCC
T ss_pred cccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCcccccc
Confidence 4 5554 999999999999 446555 3579999999999999998333456678877 89999999666554 45
Q ss_pred cccCCCccc------cccCCceEecCCCCcCCCccc-----------------------------Chhccccc--ccccc
Q 037953 216 PKGIEKLTS------LRTLSEFVVASGGGRYGSEAC-----------------------------KLEGLRHL--NHLRG 258 (625)
Q Consensus 216 p~~i~~L~~------L~~L~~~~~~~~~~~~~~~~~-----------------------------~l~~l~~L--~~L~~ 258 (625)
|..++.+.+ |+.|++..+............ ....+..+ ++|+
T Consensus 191 ~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~- 269 (844)
T 3j0a_A 191 SVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVR- 269 (844)
T ss_dssp CCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCC-
T ss_pred ccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCcc-
Confidence 555655554 777776655322100000000 00001111 3444
Q ss_pred ceEEeccCCCCChhHHHHhccCCCCCCCeEEEEEecccccccCCcccccccchhhHHHHhhcCCCCCCCcEEEEeccCCC
Q 037953 259 SLKVRGLGNVADVDEVKNAHLEKKKNLVRLILRFKDIDKAVKRWPEAISNENAAKHEAICEALWPPPNLESLEIAGFRGR 338 (625)
Q Consensus 259 ~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~ 338 (625)
.|++++. .+....+..+..+++|+.|++++|.++ ...+..+..+++|+.|++++|...
T Consensus 270 ~L~Ls~n----~l~~~~~~~~~~l~~L~~L~L~~n~i~------------------~~~~~~~~~l~~L~~L~Ls~N~l~ 327 (844)
T 3j0a_A 270 HLDLSHG----FVFSLNSRVFETLKDLKVLNLAYNKIN------------------KIADEAFYGLDNLQVLNLSYNLLG 327 (844)
T ss_dssp EEECTTC----CCCEECSCCSSSCCCCCEEEEESCCCC------------------EECTTTTTTCSSCCEEEEESCCCS
T ss_pred EEECCCC----cccccChhhhhcCCCCCEEECCCCcCC------------------CCChHHhcCCCCCCEEECCCCCCC
Confidence 5555442 222233455778888999999887532 222345667788888888887765
Q ss_pred cccCCchhhcccccccEEEEeCCCCCCCCC--CCCCCCCcceeeccccc
Q 037953 339 KMMLSTNWMASLNMLKKLRLLNCPTCEIMP--PLGQLPSLEILLIKDMT 385 (625)
Q Consensus 339 ~~~~~p~~l~~l~~L~~L~L~~c~~l~~l~--~l~~l~~L~~L~L~~~~ 385 (625)
... |..+..+++|+.|++++|. +..++ .++.+++|+.|++++|.
T Consensus 328 ~~~--~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~Ls~N~ 373 (844)
T 3j0a_A 328 ELY--SSNFYGLPKVAYIDLQKNH-IAIIQDQTFKFLEKLQTLDLRDNA 373 (844)
T ss_dssp CCC--SCSCSSCTTCCEEECCSCC-CCCCCSSCSCSCCCCCEEEEETCC
T ss_pred ccC--HHHhcCCCCCCEEECCCCC-CCccChhhhcCCCCCCEEECCCCC
Confidence 542 6677788888888888763 44444 36777888888887764
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.9e-25 Score=237.19 Aligned_cols=275 Identities=17% Similarity=0.192 Sum_probs=136.2
Q ss_pred HhcCCceeEEEeecCCCccccccchhhhhcccccccccceecC-CC-CCCCchhhcCCCCCceEeecCCCCCCccccccc
Q 037953 120 FDQLTCLRALRIEGTDNWELEEDQTNEILNGVEKLIHLRYLKL-NL-VGDLPEKCCELLNLQTLELENSSHFKRFPQGIG 197 (625)
Q Consensus 120 ~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp~~~~~L~~L~~L~L-~~-l~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~l~ 197 (625)
++.+++|++|+++ +|.+..+| ++.+++|++|++ .+ +..+| ++++++|++|++++|. ++.+| ++
T Consensus 60 l~~l~~L~~L~Ls--------~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L~~N~-l~~l~--~~ 124 (457)
T 3bz5_A 60 IEKLTGLTKLICT--------SNNITTLD--LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDTNK-LTKLD--VS 124 (457)
T ss_dssp GGGCTTCSEEECC--------SSCCSCCC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECCSSC-CSCCC--CT
T ss_pred hcccCCCCEEEcc--------CCcCCeEc--cccCCCCCEEECcCCCCceee--cCCCCcCCEEECCCCc-CCeec--CC
Confidence 4445555555555 44444443 444555555555 22 44443 4445555555555554 44443 44
Q ss_pred cccccceEEecCcccccccccCCCccccccCCceEecCCCCcCCCcccChhccccccccccceEEeccCCCCChhHHHHh
Q 037953 198 KLINLRHLIFTEDLLEYMPKGIEKLTSLRTLSEFVVASGGGRYGSEACKLEGLRHLNHLRGSLKVRGLGNVADVDEVKNA 277 (625)
Q Consensus 198 ~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~ 277 (625)
++++|++|+++.|.++.+| ++.+++|+.|++..+...+ .. .+..+++|+ .|++++.. +...
T Consensus 125 ~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~------~~---~~~~l~~L~-~L~ls~n~-l~~l------ 185 (457)
T 3bz5_A 125 QNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKIT------KL---DVTPQTQLT-TLDCSFNK-ITEL------ 185 (457)
T ss_dssp TCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCC------CC---CCTTCTTCC-EEECCSSC-CCCC------
T ss_pred CCCcCCEEECCCCccceec--cccCCcCCEEECCCCCccc------cc---ccccCCcCC-EEECCCCc-ccee------
Confidence 4555555555444444442 4444444444433322111 01 122233333 34443321 1111
Q ss_pred ccCCCCCCCeEEEEEecccccccCCcccccccchhhHHHHhhcCCCCCCCcEEEEeccCCCcccCCchhhcccccccEEE
Q 037953 278 HLEKKKNLVRLILRFKDIDKAVKRWPEAISNENAAKHEAICEALWPPPNLESLEIAGFRGRKMMLSTNWMASLNMLKKLR 357 (625)
Q Consensus 278 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~p~~l~~l~~L~~L~ 357 (625)
.+..+++|+.|++++|.++ .+ .+..+++|+.|++++|....+ | +..+++|+.|+
T Consensus 186 ~l~~l~~L~~L~l~~N~l~-------------------~~--~l~~l~~L~~L~Ls~N~l~~i---p--~~~l~~L~~L~ 239 (457)
T 3bz5_A 186 DVSQNKLLNRLNCDTNNIT-------------------KL--DLNQNIQLTFLDCSSNKLTEI---D--VTPLTQLTYFD 239 (457)
T ss_dssp CCTTCTTCCEEECCSSCCS-------------------CC--CCTTCTTCSEEECCSSCCSCC---C--CTTCTTCSEEE
T ss_pred ccccCCCCCEEECcCCcCC-------------------ee--ccccCCCCCEEECcCCccccc---C--ccccCCCCEEE
Confidence 1445555666666555321 00 244556666666666655554 4 45566666666
Q ss_pred EeCCCCCCCCCCCCCCCCcceeec----------cccccceeeCccCCCCCCCCCCCCCCCCCCCCCCCCCCeeeccCcc
Q 037953 358 LLNCPTCEIMPPLGQLPSLEILLI----------KDMTSVERVGDESLGIANGDHGAPSSSSVNNIAFPKLKELEFSGLQ 427 (625)
Q Consensus 358 L~~c~~l~~l~~l~~l~~L~~L~L----------~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~ 427 (625)
+++|. ++.+| .+.+++|+.|++ ++|..++.+| .+.+++|+.|+++++.
T Consensus 240 l~~N~-l~~~~-~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--------------------~~~l~~L~~L~Ls~n~ 297 (457)
T 3bz5_A 240 CSVNP-LTELD-VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--------------------AEGCRKIKELDVTHNT 297 (457)
T ss_dssp CCSSC-CSCCC-CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--------------------CTTCTTCCCCCCTTCT
T ss_pred eeCCc-CCCcC-HHHCCCCCEEeccCCCCCEEECCCCccCCccc--------------------ccccccCCEEECCCCc
Confidence 66543 33333 333444444433 3333332222 3456777777777766
Q ss_pred cccccccCCC-----CcccCCCccEEEEecCCCCCcCCcCCCCCCCCCEEEEecCcc
Q 037953 428 EWEDWDFRKE-----DITIMPQINSLSIYGCHKLKSLPDQLLQSSTLKTLRINRCRV 479 (625)
Q Consensus 428 ~l~~~~~~~~-----~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~ 479 (625)
.++.++.... .+..+++|+.|++++| .++.++ +.++++|+.|++++|..
T Consensus 298 ~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N-~l~~l~--l~~l~~L~~L~l~~N~l 351 (457)
T 3bz5_A 298 QLYLLDCQAAGITELDLSQNPKLVYLYLNNT-ELTELD--VSHNTKLKSLSCVNAHI 351 (457)
T ss_dssp TCCEEECTTCCCSCCCCTTCTTCCEEECTTC-CCSCCC--CTTCTTCSEEECCSSCC
T ss_pred ccceeccCCCcceEechhhcccCCEEECCCC-cccccc--cccCCcCcEEECCCCCC
Confidence 5544432211 1335688899999884 677775 67789999999988853
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
Probab=99.92 E-value=2.1e-25 Score=230.31 Aligned_cols=279 Identities=21% Similarity=0.204 Sum_probs=198.4
Q ss_pred CCCCceEEEEEEcCCCCcchhhhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhhh
Q 037953 69 TCPEKLRHLMLVLGYEAPSLVSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEIL 148 (625)
Q Consensus 69 ~~~~~lr~L~l~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp 148 (625)
...+++++|++++|.+..++. +..+++|++|++++|. ...+| .+.++++|++|+++ +|.+..+|
T Consensus 63 ~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~---i~~~~----~~~~l~~L~~L~l~--------~n~i~~~~ 126 (347)
T 4fmz_A 63 EYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNK---ITDIS----ALQNLTNLRELYLN--------EDNISDIS 126 (347)
T ss_dssp GGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC---CCCCG----GGTTCTTCSEEECT--------TSCCCCCG
T ss_pred hhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCc---ccCch----HHcCCCcCCEEECc--------CCcccCch
Confidence 447799999999999988877 8999999999999986 33344 48999999999999 88888887
Q ss_pred cccccccccceecC--CC-CCCCchhhcCCCCCceEeecCCCCCCccccccccccccceEEecCcccccccccCCCcccc
Q 037953 149 NGVEKLIHLRYLKL--NL-VGDLPEKCCELLNLQTLELENSSHFKRFPQGIGKLINLRHLIFTEDLLEYMPKGIEKLTSL 225 (625)
Q Consensus 149 ~~~~~L~~L~~L~L--~~-l~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~l~~L~~L~~L~l~~~~l~~lp~~i~~L~~L 225 (625)
. +..+++|++|++ |. ...++ .+..+++|++|++++|. +..++. ++.+++|++|++++|.+..++. +..+++|
T Consensus 127 ~-~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~-~~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L 201 (347)
T 4fmz_A 127 P-LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESK-VKDVTP-IANLTDLYSLSLNYNQIEDISP-LASLTSL 201 (347)
T ss_dssp G-GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSC-CCCCGG-GGGCTTCSEEECTTSCCCCCGG-GGGCTTC
T ss_pred h-hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCC-cCCchh-hccCCCCCEEEccCCccccccc-ccCCCcc
Confidence 5 999999999999 54 55554 59999999999999998 888775 8999999999998888888765 6666777
Q ss_pred ccCCceEecCCCCcCCCcccChhccccccccccceEEeccCCCCChhHHHHhccCCCCCCCeEEEEEecccccccCCccc
Q 037953 226 RTLSEFVVASGGGRYGSEACKLEGLRHLNHLRGSLKVRGLGNVADVDEVKNAHLEKKKNLVRLILRFKDIDKAVKRWPEA 305 (625)
Q Consensus 226 ~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~ 305 (625)
+.|++..+.... +.. +..+++|+.|++++|.++
T Consensus 202 ~~L~l~~n~l~~---------~~~-----------------------------~~~~~~L~~L~l~~n~l~--------- 234 (347)
T 4fmz_A 202 HYFTAYVNQITD---------ITP-----------------------------VANMTRLNSLKIGNNKIT--------- 234 (347)
T ss_dssp CEEECCSSCCCC---------CGG-----------------------------GGGCTTCCEEECCSSCCC---------
T ss_pred ceeecccCCCCC---------Cch-----------------------------hhcCCcCCEEEccCCccC---------
Confidence 666654332221 111 233445555555554321
Q ss_pred ccccchhhHHHHhhcCCCCCCCcEEEEeccCCCcccCCchhhcccccccEEEEeCCCCCCCCCCCCCCCCcceeeccccc
Q 037953 306 ISNENAAKHEAICEALWPPPNLESLEIAGFRGRKMMLSTNWMASLNMLKKLRLLNCPTCEIMPPLGQLPSLEILLIKDMT 385 (625)
Q Consensus 306 ~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~p~~l~~l~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~~~ 385 (625)
..+ .+..+++|+.|++++|....+ ..+..+++|+.|++++| .+..++.+..+++|+.|++++|.
T Consensus 235 ----------~~~-~~~~l~~L~~L~l~~n~l~~~----~~~~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~L~~n~ 298 (347)
T 4fmz_A 235 ----------DLS-PLANLSQLTWLEIGTNQISDI----NAVKDLTKLKMLNVGSN-QISDISVLNNLSQLNSLFLNNNQ 298 (347)
T ss_dssp ----------CCG-GGTTCTTCCEEECCSSCCCCC----GGGTTCTTCCEEECCSS-CCCCCGGGGGCTTCSEEECCSSC
T ss_pred ----------CCc-chhcCCCCCEEECCCCccCCC----hhHhcCCCcCEEEccCC-ccCCChhhcCCCCCCEEECcCCc
Confidence 111 155666777777777766553 35667777777777775 45555666777788888887765
Q ss_pred cceeeCccCCCCCCCCCCCCCCCCCCCCCCCCCCeeeccCcccccccccCCCCcccCCCccEEEEecCC
Q 037953 386 SVERVGDESLGIANGDHGAPSSSSVNNIAFPKLKELEFSGLQEWEDWDFRKEDITIMPQINSLSIYGCH 454 (625)
Q Consensus 386 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~ 454 (625)
+...+... +..+++|+.|++++++ +..+.. +..+++|++|++++|+
T Consensus 299 -l~~~~~~~-----------------l~~l~~L~~L~L~~n~-l~~~~~----~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 299 -LGNEDMEV-----------------IGGLTNLTTLFLSQNH-ITDIRP----LASLSKMDSADFANQV 344 (347)
T ss_dssp -CCGGGHHH-----------------HHTCTTCSEEECCSSS-CCCCGG----GGGCTTCSEESSSCC-
T ss_pred -CCCcChhH-----------------hhccccCCEEEccCCc-cccccC----hhhhhccceeehhhhc
Confidence 33332211 4567788888888764 333322 2367888888888864
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=2.6e-25 Score=238.35 Aligned_cols=366 Identities=15% Similarity=0.152 Sum_probs=255.8
Q ss_pred EEEEEcCCCCcchhhhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchh-hh-hccccc
Q 037953 76 HLMLVLGYEAPSLVSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTN-EI-LNGVEK 153 (625)
Q Consensus 76 ~L~l~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~-~l-p~~~~~ 153 (625)
.+...++++..+|. + .++|++|++++|. +....| ..|+++++|++|+|+ +|.+. .+ |..|.+
T Consensus 14 ~~~c~~~~l~~lp~-l--~~~l~~L~Ls~n~--i~~~~~---~~~~~l~~L~~L~L~--------~n~~~~~i~~~~~~~ 77 (455)
T 3v47_A 14 NAICINRGLHQVPE-L--PAHVNYVDLSLNS--IAELNE---TSFSRLQDLQFLKVE--------QQTPGLVIRNNTFRG 77 (455)
T ss_dssp EEECCSSCCSSCCC-C--CTTCCEEECCSSC--CCEECT---TTTSSCTTCCEEECC--------CCSTTCEECTTTTTT
T ss_pred ccCcCCCCcccCCC-C--CCccCEEEecCCc--cCcCCh---hHhccCccccEEECc--------CCcccceECcccccc
Confidence 45566667777876 3 3889999999975 556667 889999999999999 88764 55 556999
Q ss_pred ccccceecC--CCCCCC-chhhcCCCCCceEeecCCCCCCc-cccc--cccccccceEEecCcccccc-ccc-CCCcccc
Q 037953 154 LIHLRYLKL--NLVGDL-PEKCCELLNLQTLELENSSHFKR-FPQG--IGKLINLRHLIFTEDLLEYM-PKG-IEKLTSL 225 (625)
Q Consensus 154 L~~L~~L~L--~~l~~l-P~~i~~L~~L~~L~L~~~~~l~~-lp~~--l~~L~~L~~L~l~~~~l~~l-p~~-i~~L~~L 225 (625)
+++|++|+| |.+..+ |..++++++|++|++++|. +.. +|.. ++++++|++|++++|.+..+ |.. ++++++|
T Consensus 78 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L 156 (455)
T 3v47_A 78 LSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCN-LDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRF 156 (455)
T ss_dssp CTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSC-CBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTC
T ss_pred cccCCEEeCCCCccCccChhhccCcccCCEEeCCCCC-CCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcc
Confidence 999999999 446555 7889999999999999998 664 5555 89999999999988888877 444 7889999
Q ss_pred ccCCceEecCCCCcCCCcccChhccccccccccceEEeccCCCC--C--hhHHHHhccCCCCCCCeEEEEEecccccccC
Q 037953 226 RTLSEFVVASGGGRYGSEACKLEGLRHLNHLRGSLKVRGLGNVA--D--VDEVKNAHLEKKKNLVRLILRFKDIDKAVKR 301 (625)
Q Consensus 226 ~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~L~l~~~~~~~--~--~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 301 (625)
++|++..+.... ..+..+..+.. .+|+ .+.+.++.-.. . ........+..+++|+.|++++|.+.
T Consensus 157 ~~L~L~~n~l~~----~~~~~l~~l~~-~~L~-~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~----- 225 (455)
T 3v47_A 157 HVLDLTFNKVKS----ICEEDLLNFQG-KHFT-LLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFK----- 225 (455)
T ss_dssp CEEECTTCCBSC----CCTTTSGGGTT-CEEE-EEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCC-----
T ss_pred cEEeCCCCcccc----cChhhhhcccc-cccc-ccccccCcccccchhhccccccccccccceeeeEecCCCccc-----
Confidence 999877665443 11223333311 2344 45554432111 0 11112223456688999999988532
Q ss_pred CcccccccchhhHHHHhhc---CCCCCCCcEEEEeccCCCccc--------CCchhhc--ccccccEEEEeCCCCCCCCC
Q 037953 302 WPEAISNENAAKHEAICEA---LWPPPNLESLEIAGFRGRKMM--------LSTNWMA--SLNMLKKLRLLNCPTCEIMP 368 (625)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~---l~~~~~L~~L~L~~~~~~~~~--------~~p~~l~--~l~~L~~L~L~~c~~l~~l~ 368 (625)
...+.. ....++|+.|+++++...... ..+..+. ..++|+.|++++|...+..|
T Consensus 226 -------------~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 292 (455)
T 3v47_A 226 -------------ESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLK 292 (455)
T ss_dssp -------------HHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECT
T ss_pred -------------ccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccch
Confidence 222222 223478999999877433210 0011122 34689999999976555555
Q ss_pred -CCCCCCCcceeeccccccceeeCccCCCCCCCCCCCCCCCCCCCCCCCCCCeeeccCcccccccccCCCCcccCCCccE
Q 037953 369 -PLGQLPSLEILLIKDMTSVERVGDESLGIANGDHGAPSSSSVNNIAFPKLKELEFSGLQEWEDWDFRKEDITIMPQINS 447 (625)
Q Consensus 369 -~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~l~~L~~ 447 (625)
.++.+++|+.|++++|. ++.++... +..+++|+.|+++++. +..+.. ..+..+++|++
T Consensus 293 ~~~~~l~~L~~L~Ls~n~-l~~~~~~~-----------------~~~l~~L~~L~Ls~N~-l~~~~~--~~~~~l~~L~~ 351 (455)
T 3v47_A 293 SVFSHFTDLEQLTLAQNE-INKIDDNA-----------------FWGLTHLLKLNLSQNF-LGSIDS--RMFENLDKLEV 351 (455)
T ss_dssp TTTTTCTTCCEEECTTSC-CCEECTTT-----------------TTTCTTCCEEECCSSC-CCEECG--GGGTTCTTCCE
T ss_pred hhcccCCCCCEEECCCCc-ccccChhH-----------------hcCcccCCEEECCCCc-cCCcCh--hHhcCcccCCE
Confidence 48899999999999987 55554322 5678999999999873 344322 12447999999
Q ss_pred EEEecCCCCCcC-CcCCCCCCCCCEEEEecCcchhhcccccccccCCCCceEEecCCCC
Q 037953 448 LSIYGCHKLKSL-PDQLLQSSTLKTLRINRCRVLEEHFKKDRSKISHIPDIQIYERGPG 505 (625)
Q Consensus 448 L~l~~c~~l~~l-p~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~l~~l~~l~~~~~~~~ 505 (625)
|++++| .++.+ |..+..+++|++|++++|. +++++...+..+.++..+.+.++...
T Consensus 352 L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~l~ 408 (455)
T 3v47_A 352 LDLSYN-HIRALGDQSFLGLPNLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNPWD 408 (455)
T ss_dssp EECCSS-CCCEECTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred EECCCC-cccccChhhccccccccEEECCCCc-cccCCHhHhccCCcccEEEccCCCcc
Confidence 999997 55554 7788889999999999985 55666444567778888888776543
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=6.3e-25 Score=230.49 Aligned_cols=302 Identities=18% Similarity=0.163 Sum_probs=190.1
Q ss_pred cCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhhhc-ccccccccceecC--CCCCCCc
Q 037953 93 NAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEILN-GVEKLIHLRYLKL--NLVGDLP 169 (625)
Q Consensus 93 ~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp~-~~~~L~~L~~L~L--~~l~~lP 169 (625)
.++++++|+++++. +...++ ..|.++++|++|+++ +|.+..+|. .|+.+++|++|+| |.+..+|
T Consensus 43 ~l~~l~~l~l~~~~--l~~l~~---~~~~~l~~L~~L~L~--------~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 109 (390)
T 3o6n_A 43 TLNNQKIVTFKNST--MRKLPA---ALLDSFRQVELLNLN--------DLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLP 109 (390)
T ss_dssp GGCCCSEEEEESCE--ESEECT---HHHHHCCCCSEEECT--------TSCCCEECTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred ccCCceEEEecCCc--hhhCCh---hHhcccccCcEEECC--------CCcccccChhhccCCCCcCEEECCCCCCCcCC
Confidence 35666666666643 333333 455666666666666 666555543 5666666666666 3355543
Q ss_pred -hhhcCCCCCceEeecCCCCCCccccc-cccccccceEEecCcccccccc-cCCCccccccCCceEecCCCCcCCCcccC
Q 037953 170 -EKCCELLNLQTLELENSSHFKRFPQG-IGKLINLRHLIFTEDLLEYMPK-GIEKLTSLRTLSEFVVASGGGRYGSEACK 246 (625)
Q Consensus 170 -~~i~~L~~L~~L~L~~~~~l~~lp~~-l~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~~~~~~~~~~~~~~~~~~ 246 (625)
..++++++|++|++++|. ++.+|.. ++++++|++|+++.|.+..++. .++.+++|++|++..+.... ..
T Consensus 110 ~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-------~~ 181 (390)
T 3o6n_A 110 PHVFQNVPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-------VD 181 (390)
T ss_dssp TTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSB-------CC
T ss_pred HHHhcCCCCCCEEECCCCc-cCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCc-------cc
Confidence 335666666666666666 6666655 3666666666666666655543 35666666666654443322 12
Q ss_pred hhccccccccccceEEeccCCCCChhHHHHhccCCCCCCCeEEEEEecccccccCCcccccccchhhHHHHhhcCCCCCC
Q 037953 247 LEGLRHLNHLRGSLKVRGLGNVADVDEVKNAHLEKKKNLVRLILRFKDIDKAVKRWPEAISNENAAKHEAICEALWPPPN 326 (625)
Q Consensus 247 l~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 326 (625)
++ .++.|+ .+.+.+.. . ..+....+|+.|++++|.+. .++ ...+++
T Consensus 182 ~~---~l~~L~-~L~l~~n~----l-----~~~~~~~~L~~L~l~~n~l~-------------------~~~--~~~~~~ 227 (390)
T 3o6n_A 182 LS---LIPSLF-HANVSYNL----L-----STLAIPIAVEELDASHNSIN-------------------VVR--GPVNVE 227 (390)
T ss_dssp GG---GCTTCS-EEECCSSC----C-----SEEECCSSCSEEECCSSCCC-------------------EEE--CCCCSS
T ss_pred cc---cccccc-eeeccccc----c-----cccCCCCcceEEECCCCeee-------------------ecc--cccccc
Confidence 22 233333 44443311 1 11233457888888877422 111 123468
Q ss_pred CcEEEEeccCCCcccCCchhhcccccccEEEEeCCCCCCCCC-CCCCCCCcceeeccccccceeeCccCCCCCCCCCCCC
Q 037953 327 LESLEIAGFRGRKMMLSTNWMASLNMLKKLRLLNCPTCEIMP-PLGQLPSLEILLIKDMTSVERVGDESLGIANGDHGAP 405 (625)
Q Consensus 327 L~~L~L~~~~~~~~~~~p~~l~~l~~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~ 405 (625)
|+.|++++|.... +.++..+++|++|++++|...+..| .++.+++|+.|++++|. ++.++..
T Consensus 228 L~~L~l~~n~l~~----~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~------------ 290 (390)
T 3o6n_A 228 LTILKLQHNNLTD----TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR-LVALNLY------------ 290 (390)
T ss_dssp CCEEECCSSCCCC----CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSC-CCEEECS------------
T ss_pred ccEEECCCCCCcc----cHHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCc-CcccCcc------------
Confidence 9999999988776 5678889999999999865443334 47889999999999875 6666543
Q ss_pred CCCCCCCCCCCCCCeeeccCcccccccccCCCCcccCCCccEEEEecCCCCCcCCcCCCCCCCCCEEEEecCcc
Q 037953 406 SSSSVNNIAFPKLKELEFSGLQEWEDWDFRKEDITIMPQINSLSIYGCHKLKSLPDQLLQSSTLKTLRINRCRV 479 (625)
Q Consensus 406 ~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~ 479 (625)
...+++|+.|+++++ .+..++.. +..+++|++|++++| .++.+| +..+++|++|++++|+.
T Consensus 291 ------~~~l~~L~~L~L~~n-~l~~~~~~---~~~l~~L~~L~L~~N-~i~~~~--~~~~~~L~~L~l~~N~~ 351 (390)
T 3o6n_A 291 ------GQPIPTLKVLDLSHN-HLLHVERN---QPQFDRLENLYLDHN-SIVTLK--LSTHHTLKNLTLSHNDW 351 (390)
T ss_dssp ------SSCCTTCCEEECCSS-CCCCCGGG---HHHHTTCSEEECCSS-CCCCCC--CCTTCCCSEEECCSSCE
T ss_pred ------cCCCCCCCEEECCCC-cceecCcc---ccccCcCCEEECCCC-ccceeC--chhhccCCEEEcCCCCc
Confidence 456889999999987 34444322 336899999999995 577776 55688999999999875
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.92 E-value=2.4e-24 Score=232.34 Aligned_cols=311 Identities=19% Similarity=0.197 Sum_probs=212.4
Q ss_pred EEEEEEcCCCCcchhhhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhh-hccccc
Q 037953 75 RHLMLVLGYEAPSLVSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEI-LNGVEK 153 (625)
Q Consensus 75 r~L~l~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~l-p~~~~~ 153 (625)
+.+..+++.+..+|..+. +++++|++++|. +....| ..|.++++|++|+|+ +|.+..+ |..|++
T Consensus 14 ~~v~c~~~~l~~ip~~~~--~~l~~L~L~~n~--l~~~~~---~~~~~l~~L~~L~L~--------~n~i~~~~~~~~~~ 78 (477)
T 2id5_A 14 RAVLCHRKRFVAVPEGIP--TETRLLDLGKNR--IKTLNQ---DEFASFPHLEELELN--------ENIVSAVEPGAFNN 78 (477)
T ss_dssp TEEECCSCCCSSCCSCCC--TTCSEEECCSSC--CCEECT---TTTTTCTTCCEEECT--------TSCCCEECTTTTTT
T ss_pred CEEEeCCCCcCcCCCCCC--CCCcEEECCCCc--cceECH---hHccCCCCCCEEECC--------CCccCEeChhhhhC
Confidence 345666667777777654 689999999965 455556 778999999999999 8887766 677899
Q ss_pred ccccceecC-CC-CCCCchh-hcCCCCCceEeecCCCCCCcc-ccccccccccceEEecCccccccc-ccCCCccccccC
Q 037953 154 LIHLRYLKL-NL-VGDLPEK-CCELLNLQTLELENSSHFKRF-PQGIGKLINLRHLIFTEDLLEYMP-KGIEKLTSLRTL 228 (625)
Q Consensus 154 L~~L~~L~L-~~-l~~lP~~-i~~L~~L~~L~L~~~~~l~~l-p~~l~~L~~L~~L~l~~~~l~~lp-~~i~~L~~L~~L 228 (625)
+++|++|+| .+ +..+|.. +.++++|++|+|++|. +..+ |..+.++++|++|+++.|.+..++ ..++.+++|+.|
T Consensus 79 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 157 (477)
T 2id5_A 79 LFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENK-IVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQL 157 (477)
T ss_dssp CTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEE
T ss_pred CccCCEEECCCCcCCccCcccccCCCCCCEEECCCCc-cccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEE
Confidence 999999999 44 8888764 6889999999999998 6654 556888999999999877776664 346666666666
Q ss_pred CceEecCCCCcCCCcccChhccccccccccceEEeccCCCCChhHHHHhccCCCCCCCeEEEEEecccccccCCcccccc
Q 037953 229 SEFVVASGGGRYGSEACKLEGLRHLNHLRGSLKVRGLGNVADVDEVKNAHLEKKKNLVRLILRFKDIDKAVKRWPEAISN 308 (625)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 308 (625)
++..+.... .....+..+++|+.|++++|.+.
T Consensus 158 ~l~~n~l~~------------------------------------~~~~~l~~l~~L~~L~l~~n~i~------------ 189 (477)
T 2id5_A 158 TLEKCNLTS------------------------------------IPTEALSHLHGLIVLRLRHLNIN------------ 189 (477)
T ss_dssp EEESCCCSS------------------------------------CCHHHHTTCTTCCEEEEESCCCC------------
T ss_pred ECCCCcCcc------------------------------------cChhHhcccCCCcEEeCCCCcCc------------
Confidence 654332211 01122445566666666665421
Q ss_pred cchhhHHHHhhcCCCCCCCcEEEEeccCCCcccCCchhhcccccccEEEEeCCCCCCCCC--CCCCCCCcceeecccccc
Q 037953 309 ENAAKHEAICEALWPPPNLESLEIAGFRGRKMMLSTNWMASLNMLKKLRLLNCPTCEIMP--PLGQLPSLEILLIKDMTS 386 (625)
Q Consensus 309 ~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~p~~l~~l~~L~~L~L~~c~~l~~l~--~l~~l~~L~~L~L~~~~~ 386 (625)
......+..+++|+.|++++|...... |.......+|+.|++++| .++.+| .+..+++|+.|+|++|.
T Consensus 190 ------~~~~~~~~~l~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~- 259 (477)
T 2id5_A 190 ------AIRDYSFKRLYRLKVLEISHWPYLDTM--TPNCLYGLNLTSLSITHC-NLTAVPYLAVRHLVYLRFLNLSYNP- 259 (477)
T ss_dssp ------EECTTCSCSCTTCCEEEEECCTTCCEE--CTTTTTTCCCSEEEEESS-CCCSCCHHHHTTCTTCCEEECCSSC-
T ss_pred ------EeChhhcccCcccceeeCCCCcccccc--CcccccCccccEEECcCC-cccccCHHHhcCccccCeeECCCCc-
Confidence 111234566677777777766543321 555555567888888875 455566 36778888888888765
Q ss_pred ceeeCccCCCCCCCCCCCCCCCCCCCCCCCCCCeeeccCcccccccccCCCCcccCCCccEEEEecCCCCCcCCcC-CCC
Q 037953 387 VERVGDESLGIANGDHGAPSSSSVNNIAFPKLKELEFSGLQEWEDWDFRKEDITIMPQINSLSIYGCHKLKSLPDQ-LLQ 465 (625)
Q Consensus 387 l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~-~~~ 465 (625)
++.++... +..+++|+.|+++++. +..+. +..+..+++|+.|++++| .++.+|.. +..
T Consensus 260 l~~~~~~~-----------------~~~l~~L~~L~L~~n~-l~~~~--~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~ 318 (477)
T 2id5_A 260 ISTIEGSM-----------------LHELLRLQEIQLVGGQ-LAVVE--PYAFRGLNYLRVLNVSGN-QLTTLEESVFHS 318 (477)
T ss_dssp CCEECTTS-----------------CTTCTTCCEEECCSSC-CSEEC--TTTBTTCTTCCEEECCSS-CCSCCCGGGBSC
T ss_pred CCccChhh-----------------ccccccCCEEECCCCc-cceEC--HHHhcCcccCCEEECCCC-cCceeCHhHcCC
Confidence 55555432 4567788888888763 33332 122447888999999985 67777764 466
Q ss_pred CCCCCEEEEecCcch
Q 037953 466 SSTLKTLRINRCRVL 480 (625)
Q Consensus 466 l~~L~~L~l~~c~~L 480 (625)
+++|++|++++|+..
T Consensus 319 l~~L~~L~l~~N~l~ 333 (477)
T 2id5_A 319 VGNLETLILDSNPLA 333 (477)
T ss_dssp GGGCCEEECCSSCEE
T ss_pred CcccCEEEccCCCcc
Confidence 888999999888753
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.8e-24 Score=225.52 Aligned_cols=300 Identities=14% Similarity=0.104 Sum_probs=233.0
Q ss_pred CCceEEEEEEcCCCCcchhh-hccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhhh-
Q 037953 71 PEKLRHLMLVLGYEAPSLVS-IFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEIL- 148 (625)
Q Consensus 71 ~~~lr~L~l~~~~~~~~~~~-~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp- 148 (625)
..+++++++.++.+..+|.. +..+++|++|++++|. +....| ..|..+++|++|+|+ +|.+..+|
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~--i~~~~~---~~~~~l~~L~~L~L~--------~n~l~~~~~ 110 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQ--IEEIDT---YAFAYAHTIQKLYMG--------FNAIRYLPP 110 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSC--CCEECT---TTTTTCTTCCEEECC--------SSCCCCCCT
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCc--ccccCh---hhccCCCCcCEEECC--------CCCCCcCCH
Confidence 47899999999999888875 6789999999999975 455555 689999999999999 88887774
Q ss_pred cccccccccceecC-CC-CCCCchh-hcCCCCCceEeecCCCCCCcccc-ccccccccceEEecCcccccccccCCCccc
Q 037953 149 NGVEKLIHLRYLKL-NL-VGDLPEK-CCELLNLQTLELENSSHFKRFPQ-GIGKLINLRHLIFTEDLLEYMPKGIEKLTS 224 (625)
Q Consensus 149 ~~~~~L~~L~~L~L-~~-l~~lP~~-i~~L~~L~~L~L~~~~~l~~lp~-~l~~L~~L~~L~l~~~~l~~lp~~i~~L~~ 224 (625)
..|+++++|++|++ .+ +..+|.. ++++++|++|++++|. +..++. .++++++|++|+++.|.++.++ ++.+++
T Consensus 111 ~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~l~~ 187 (390)
T 3o6n_A 111 HVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPS 187 (390)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTSSCTTCCEEECCSSCCSBCC--GGGCTT
T ss_pred HHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCc-cCccChhhccCCCCCCEEECCCCcCCccc--cccccc
Confidence 55899999999999 44 9999987 4899999999999998 777654 5899999999999999888874 566778
Q ss_pred cccCCceEecCCCCcCCCcccChhccccccccccceEEeccCCCCChhHHHHhccCCCCCCCeEEEEEecccccccCCcc
Q 037953 225 LRTLSEFVVASGGGRYGSEACKLEGLRHLNHLRGSLKVRGLGNVADVDEVKNAHLEKKKNLVRLILRFKDIDKAVKRWPE 304 (625)
Q Consensus 225 L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 304 (625)
|+.|++..+.. ..+.....|+ .|.+.+..- ... .....++|+.|++++|.++
T Consensus 188 L~~L~l~~n~l------------~~~~~~~~L~-~L~l~~n~l-~~~------~~~~~~~L~~L~l~~n~l~-------- 239 (390)
T 3o6n_A 188 LFHANVSYNLL------------STLAIPIAVE-ELDASHNSI-NVV------RGPVNVELTILKLQHNNLT-------- 239 (390)
T ss_dssp CSEEECCSSCC------------SEEECCSSCS-EEECCSSCC-CEE------ECCCCSSCCEEECCSSCCC--------
T ss_pred cceeecccccc------------cccCCCCcce-EEECCCCee-eec------cccccccccEEECCCCCCc--------
Confidence 88777653322 2223334555 666665321 111 1223478999999988633
Q ss_pred cccccchhhHHHHhhcCCCCCCCcEEEEeccCCCcccCCchhhcccccccEEEEeCCCCCCCCCC-CCCCCCcceeeccc
Q 037953 305 AISNENAAKHEAICEALWPPPNLESLEIAGFRGRKMMLSTNWMASLNMLKKLRLLNCPTCEIMPP-LGQLPSLEILLIKD 383 (625)
Q Consensus 305 ~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~p~~l~~l~~L~~L~L~~c~~l~~l~~-l~~l~~L~~L~L~~ 383 (625)
....+..+++|+.|++++|...... |..+..+++|+.|++++|. +..++. ...+++|+.|++++
T Consensus 240 ------------~~~~l~~l~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~L~~ 304 (390)
T 3o6n_A 240 ------------DTAWLLNYPGLVEVDLSYNELEKIM--YHPFVKMQRLERLYISNNR-LVALNLYGQPIPTLKVLDLSH 304 (390)
T ss_dssp ------------CCGGGGGCTTCSEEECCSSCCCEEE--SGGGTTCSSCCEEECCSSC-CCEEECSSSCCTTCCEEECCS
T ss_pred ------------ccHHHcCCCCccEEECCCCcCCCcC--hhHccccccCCEEECCCCc-CcccCcccCCCCCCCEEECCC
Confidence 1145677899999999999877653 7788899999999999964 555654 67799999999999
Q ss_pred cccceeeCccCCCCCCCCCCCCCCCCCCCCCCCCCCeeeccCcccccccccCCCCcccCCCccEEEEecCC
Q 037953 384 MTSVERVGDESLGIANGDHGAPSSSSVNNIAFPKLKELEFSGLQEWEDWDFRKEDITIMPQINSLSIYGCH 454 (625)
Q Consensus 384 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~ 454 (625)
|. ++.+|.. ...+++|+.|+++++. +..++ +..+++|+.|++++|+
T Consensus 305 n~-l~~~~~~------------------~~~l~~L~~L~L~~N~-i~~~~-----~~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 305 NH-LLHVERN------------------QPQFDRLENLYLDHNS-IVTLK-----LSTHHTLKNLTLSHND 350 (390)
T ss_dssp SC-CCCCGGG------------------HHHHTTCSEEECCSSC-CCCCC-----CCTTCCCSEEECCSSC
T ss_pred Cc-ceecCcc------------------ccccCcCCEEECCCCc-cceeC-----chhhccCCEEEcCCCC
Confidence 86 6666644 4678999999999874 44443 3378999999999964
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.91 E-value=3.2e-24 Score=237.65 Aligned_cols=303 Identities=18% Similarity=0.157 Sum_probs=204.6
Q ss_pred cCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhhh-cccccccccceecC--CCCCCCc
Q 037953 93 NAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEIL-NGVEKLIHLRYLKL--NLVGDLP 169 (625)
Q Consensus 93 ~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp-~~~~~L~~L~~L~L--~~l~~lP 169 (625)
.+++++.|++++|. +...++ ..|.++++|++|+|+ +|.+..+| ..|+.+++|++|+| |.+..+|
T Consensus 49 ~l~~l~~l~l~~~~--l~~lp~---~~~~~l~~L~~L~L~--------~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 115 (597)
T 3oja_B 49 TLNNQKIVTFKNST--MRKLPA---ALLDSFRQVELLNLN--------DLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLP 115 (597)
T ss_dssp GGCCCSEEEESSCE--ESEECT---HHHHHCCCCSEEECT--------TSCCCEECTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred cCCCceEEEeeCCC--CCCcCH---HHHccCCCCcEEECC--------CCCCCCCChHHhcCCCCCCEEECCCCcCCCCC
Confidence 35667777777754 344444 566777777777777 66666554 35777777777777 3355555
Q ss_pred h-hhcCCCCCceEeecCCCCCCccccc-cccccccceEEecCcccccccc-cCCCccccccCCceEecCCCCcCCCcccC
Q 037953 170 E-KCCELLNLQTLELENSSHFKRFPQG-IGKLINLRHLIFTEDLLEYMPK-GIEKLTSLRTLSEFVVASGGGRYGSEACK 246 (625)
Q Consensus 170 ~-~i~~L~~L~~L~L~~~~~l~~lp~~-l~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~~~~~~~~~~~~~~~~~~ 246 (625)
. .++++++|++|+|++|. +..+|.. ++++++|++|++++|.+..+|. .++.+++|++|++..+.... ..
T Consensus 116 ~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-------~~ 187 (597)
T 3oja_B 116 PHVFQNVPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-------VD 187 (597)
T ss_dssp TTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSB-------CC
T ss_pred HHHHcCCCCCCEEEeeCCC-CCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCC-------cC
Confidence 4 35777777777777776 6677665 4677777777776666666554 46667777777665444332 12
Q ss_pred hhccccccccccceEEeccCCCCChhHHHHhccCCCCCCCeEEEEEecccccccCCcccccccchhhHHHHhhcCCCCCC
Q 037953 247 LEGLRHLNHLRGSLKVRGLGNVADVDEVKNAHLEKKKNLVRLILRFKDIDKAVKRWPEAISNENAAKHEAICEALWPPPN 326 (625)
Q Consensus 247 l~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 326 (625)
++.+ +.|+ .+.+.+.. + ..+....+|+.|++++|.+. .++. ...++
T Consensus 188 ~~~l---~~L~-~L~l~~n~----l-----~~l~~~~~L~~L~ls~n~l~-------------------~~~~--~~~~~ 233 (597)
T 3oja_B 188 LSLI---PSLF-HANVSYNL----L-----STLAIPIAVEELDASHNSIN-------------------VVRG--PVNVE 233 (597)
T ss_dssp GGGC---TTCS-EEECCSSC----C-----SEEECCTTCSEEECCSSCCC-------------------EEEC--SCCSC
T ss_pred hhhh---hhhh-hhhcccCc----c-----ccccCCchhheeeccCCccc-------------------cccc--ccCCC
Confidence 2333 3333 44444321 1 12344567888888877532 1111 12368
Q ss_pred CcEEEEeccCCCcccCCchhhcccccccEEEEeCCCCCCCCC-CCCCCCCcceeeccccccceeeCccCCCCCCCCCCCC
Q 037953 327 LESLEIAGFRGRKMMLSTNWMASLNMLKKLRLLNCPTCEIMP-PLGQLPSLEILLIKDMTSVERVGDESLGIANGDHGAP 405 (625)
Q Consensus 327 L~~L~L~~~~~~~~~~~p~~l~~l~~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~ 405 (625)
|+.|++++|.... +.++..+++|+.|++++|...+..| .++.+++|+.|+|++|. +..+|..
T Consensus 234 L~~L~L~~n~l~~----~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~------------ 296 (597)
T 3oja_B 234 LTILKLQHNNLTD----TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR-LVALNLY------------ 296 (597)
T ss_dssp CCEEECCSSCCCC----CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSC-CCEEECS------------
T ss_pred CCEEECCCCCCCC----ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCC-CCCCCcc------------
Confidence 9999999998776 6788999999999999976544445 48899999999999976 6666543
Q ss_pred CCCCCCCCCCCCCCeeeccCcccccccccCCCCcccCCCccEEEEecCCCCCcCCcCCCCCCCCCEEEEecCcch
Q 037953 406 SSSSVNNIAFPKLKELEFSGLQEWEDWDFRKEDITIMPQINSLSIYGCHKLKSLPDQLLQSSTLKTLRINRCRVL 480 (625)
Q Consensus 406 ~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~L 480 (625)
...+++|+.|+++++. +..++.. +..+++|+.|++++| .+..+| +..+++|+.|++++|+.-
T Consensus 297 ------~~~l~~L~~L~Ls~N~-l~~i~~~---~~~l~~L~~L~L~~N-~l~~~~--~~~~~~L~~L~l~~N~~~ 358 (597)
T 3oja_B 297 ------GQPIPTLKVLDLSHNH-LLHVERN---QPQFDRLENLYLDHN-SIVTLK--LSTHHTLKNLTLSHNDWD 358 (597)
T ss_dssp ------SSCCTTCCEEECCSSC-CCCCGGG---HHHHTTCSEEECCSS-CCCCCC--CCTTCCCSEEECCSSCEE
T ss_pred ------cccCCCCcEEECCCCC-CCccCcc---cccCCCCCEEECCCC-CCCCcC--hhhcCCCCEEEeeCCCCC
Confidence 4568999999999874 4444322 347899999999996 577776 556899999999999754
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.91 E-value=6.5e-24 Score=226.69 Aligned_cols=302 Identities=16% Similarity=0.116 Sum_probs=230.3
Q ss_pred CCceEEEEEEcCCCCcchhhhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhhhcc
Q 037953 71 PEKLRHLMLVLGYEAPSLVSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEILNG 150 (625)
Q Consensus 71 ~~~lr~L~l~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp~~ 150 (625)
.+++++|++++|.+..+| .+..+++|++|++++|. ...+| ++.+++|++|+++ +|.+..+|
T Consensus 41 l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~---l~~~~-----~~~l~~L~~L~Ls--------~N~l~~~~-- 101 (457)
T 3bz5_A 41 LATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNN---ITTLD-----LSQNTNLTYLACD--------SNKLTNLD-- 101 (457)
T ss_dssp HTTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSSC---CSCCC-----CTTCTTCSEEECC--------SSCCSCCC--
T ss_pred cCCCCEEEccCCCcccCh-hhcccCCCCEEEccCCc---CCeEc-----cccCCCCCEEECc--------CCCCceee--
Confidence 578999999999998876 68999999999999986 33445 8899999999999 88888775
Q ss_pred cccccccceecC-CC-CCCCchhhcCCCCCceEeecCCCCCCccccccccccccceEEecCc-ccccccccCCCcccccc
Q 037953 151 VEKLIHLRYLKL-NL-VGDLPEKCCELLNLQTLELENSSHFKRFPQGIGKLINLRHLIFTED-LLEYMPKGIEKLTSLRT 227 (625)
Q Consensus 151 ~~~L~~L~~L~L-~~-l~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~l~~L~~L~~L~l~~~-~l~~lp~~i~~L~~L~~ 227 (625)
++++++|++|++ .+ +..+| ++++++|++|++++|. ++.+| ++++++|++|+++.| .++.+ .++.+++|+.
T Consensus 102 ~~~l~~L~~L~L~~N~l~~l~--~~~l~~L~~L~l~~N~-l~~l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~ 174 (457)
T 3bz5_A 102 VTPLTKLTYLNCDTNKLTKLD--VSQNPLLTYLNCARNT-LTEID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTT 174 (457)
T ss_dssp CTTCTTCCEEECCSSCCSCCC--CTTCTTCCEEECTTSC-CSCCC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCE
T ss_pred cCCCCcCCEEECCCCcCCeec--CCCCCcCCEEECCCCc-cceec--cccCCcCCEEECCCCCccccc--ccccCCcCCE
Confidence 899999999999 44 88886 8999999999999998 88875 889999999999665 66666 4778899999
Q ss_pred CCceEecCCCCcCCCcccChhccccccccccceEEeccCCCCChhHHHHhccCCCCCCCeEEEEEecccccccCCccccc
Q 037953 228 LSEFVVASGGGRYGSEACKLEGLRHLNHLRGSLKVRGLGNVADVDEVKNAHLEKKKNLVRLILRFKDIDKAVKRWPEAIS 307 (625)
Q Consensus 228 L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 307 (625)
|++..+.... . . +..++.|+ .|.+.+..- ... .+..+++|+.|++++|.++
T Consensus 175 L~ls~n~l~~-----l--~---l~~l~~L~-~L~l~~N~l-~~~------~l~~l~~L~~L~Ls~N~l~----------- 225 (457)
T 3bz5_A 175 LDCSFNKITE-----L--D---VSQNKLLN-RLNCDTNNI-TKL------DLNQNIQLTFLDCSSNKLT----------- 225 (457)
T ss_dssp EECCSSCCCC-----C--C---CTTCTTCC-EEECCSSCC-SCC------CCTTCTTCSEEECCSSCCS-----------
T ss_pred EECCCCccce-----e--c---cccCCCCC-EEECcCCcC-Cee------ccccCCCCCEEECcCCccc-----------
Confidence 8877665443 1 1 45555666 677765321 221 3788999999999988633
Q ss_pred ccchhhHHHHhhcCCCCCCCcEEEEeccCCCcccCCchhhccccccc----------EEEEeCCCCCCCCCCCCCCCCcc
Q 037953 308 NENAAKHEAICEALWPPPNLESLEIAGFRGRKMMLSTNWMASLNMLK----------KLRLLNCPTCEIMPPLGQLPSLE 377 (625)
Q Consensus 308 ~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~p~~l~~l~~L~----------~L~L~~c~~l~~l~~l~~l~~L~ 377 (625)
.++ +..+++|+.|++++|..... | +..+++|+ .|++++|...+.+| .+.+++|+
T Consensus 226 --------~ip--~~~l~~L~~L~l~~N~l~~~---~--~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~-~~~l~~L~ 289 (457)
T 3bz5_A 226 --------EID--VTPLTQLTYFDCSVNPLTEL---D--VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ-AEGCRKIK 289 (457)
T ss_dssp --------CCC--CTTCTTCSEEECCSSCCSCC---C--CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE-CTTCTTCC
T ss_pred --------ccC--ccccCCCCEEEeeCCcCCCc---C--HHHCCCCCEEeccCCCCCEEECCCCccCCccc-ccccccCC
Confidence 122 67889999999999988775 4 33445554 55555555555555 56789999
Q ss_pred eeeccccccceeeCccCCCCCCCCCCCCCCCCCCCCCCCCCCeeeccCcccccccccCCCCcccCCCccEEEEecCCCCC
Q 037953 378 ILLIKDMTSVERVGDESLGIANGDHGAPSSSSVNNIAFPKLKELEFSGLQEWEDWDFRKEDITIMPQINSLSIYGCHKLK 457 (625)
Q Consensus 378 ~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~ 457 (625)
.|++++|..++.+|.....+. .+ .+..+++|++|+++++ +++.++ ++.+++|+.|++++| .++
T Consensus 290 ~L~Ls~n~~l~~l~~~~~~L~---~L-------~l~~~~~L~~L~L~~N-~l~~l~-----l~~l~~L~~L~l~~N-~l~ 352 (457)
T 3bz5_A 290 ELDVTHNTQLYLLDCQAAGIT---EL-------DLSQNPKLVYLYLNNT-ELTELD-----VSHNTKLKSLSCVNA-HIQ 352 (457)
T ss_dssp CCCCTTCTTCCEEECTTCCCS---CC-------CCTTCTTCCEEECTTC-CCSCCC-----CTTCTTCSEEECCSS-CCC
T ss_pred EEECCCCcccceeccCCCcce---Ee-------chhhcccCCEEECCCC-cccccc-----cccCCcCcEEECCCC-CCC
Confidence 999999999998886433222 11 1566789999999876 344442 447999999999994 676
Q ss_pred cCC
Q 037953 458 SLP 460 (625)
Q Consensus 458 ~lp 460 (625)
.+|
T Consensus 353 ~l~ 355 (457)
T 3bz5_A 353 DFS 355 (457)
T ss_dssp BCT
T ss_pred Ccc
Confidence 653
|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=3.6e-23 Score=231.10 Aligned_cols=141 Identities=18% Similarity=0.220 Sum_probs=118.9
Q ss_pred CCCceEEEEEEcCCCCcchh-hhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhhh
Q 037953 70 CPEKLRHLMLVLGYEAPSLV-SIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEIL 148 (625)
Q Consensus 70 ~~~~lr~L~l~~~~~~~~~~-~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp 148 (625)
.|.++++|++++|.+..+++ +|.++++|++|+|++|. +....| ++|.++++|++|+|+ +|.+..+|
T Consensus 50 lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~--i~~i~~---~~f~~L~~L~~L~Ls--------~N~l~~l~ 116 (635)
T 4g8a_A 50 LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE--IQTIED---GAYQSLSHLSTLILT--------GNPIQSLA 116 (635)
T ss_dssp SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCC--CCEECT---TTTTTCTTCCEEECT--------TCCCCEEC
T ss_pred CCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCc--CCCcCh---hHhcCCCCCCEEEcc--------CCcCCCCC
Confidence 56789999999999988874 78999999999999976 455566 789999999999999 99998887
Q ss_pred c-ccccccccceecC--CCCCCCch-hhcCCCCCceEeecCCCCCCc--cccccccccccceEEecCcccccccc-cCCC
Q 037953 149 N-GVEKLIHLRYLKL--NLVGDLPE-KCCELLNLQTLELENSSHFKR--FPQGIGKLINLRHLIFTEDLLEYMPK-GIEK 221 (625)
Q Consensus 149 ~-~~~~L~~L~~L~L--~~l~~lP~-~i~~L~~L~~L~L~~~~~l~~--lp~~l~~L~~L~~L~l~~~~l~~lp~-~i~~ 221 (625)
. .|.++++|++|+| |.+..+|. .++++++|++|++++|. +.. +|..++++++|++|+++.|.++.++. .+..
T Consensus 117 ~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~ 195 (635)
T 4g8a_A 117 LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRV 195 (635)
T ss_dssp GGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHH
T ss_pred HHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCc-cccCCCchhhccchhhhhhcccCccccccccccccc
Confidence 5 5899999999999 44888876 48999999999999998 664 57789999999999998888876643 3443
Q ss_pred ccc
Q 037953 222 LTS 224 (625)
Q Consensus 222 L~~ 224 (625)
+.+
T Consensus 196 L~~ 198 (635)
T 4g8a_A 196 LHQ 198 (635)
T ss_dssp HHT
T ss_pred hhh
Confidence 333
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=2.6e-23 Score=224.23 Aligned_cols=312 Identities=18% Similarity=0.162 Sum_probs=229.2
Q ss_pred eEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhh-hcccccccccceecC--CCCCCC-chhhc
Q 037953 98 RSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEI-LNGVEKLIHLRYLKL--NLVGDL-PEKCC 173 (625)
Q Consensus 98 r~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~l-p~~~~~L~~L~~L~L--~~l~~l-P~~i~ 173 (625)
+.++.+++. ...+| ..+ .+++++|+|+ +|.+..+ |..|.++++|++|+| |.+..+ |..+.
T Consensus 14 ~~v~c~~~~---l~~ip---~~~--~~~l~~L~L~--------~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~ 77 (477)
T 2id5_A 14 RAVLCHRKR---FVAVP---EGI--PTETRLLDLG--------KNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFN 77 (477)
T ss_dssp TEEECCSCC---CSSCC---SCC--CTTCSEEECC--------SSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTT
T ss_pred CEEEeCCCC---cCcCC---CCC--CCCCcEEECC--------CCccceECHhHccCCCCCCEEECCCCccCEeChhhhh
Confidence 456666643 34445 322 3689999999 8888777 457999999999999 446665 77899
Q ss_pred CCCCCceEeecCCCCCCccccc-cccccccceEEecCccccccc-ccCCCccccccCCceEecCCCCcCCCcccChhccc
Q 037953 174 ELLNLQTLELENSSHFKRFPQG-IGKLINLRHLIFTEDLLEYMP-KGIEKLTSLRTLSEFVVASGGGRYGSEACKLEGLR 251 (625)
Q Consensus 174 ~L~~L~~L~L~~~~~l~~lp~~-l~~L~~L~~L~l~~~~l~~lp-~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~l~ 251 (625)
++++|++|+|++|. ++.+|.. ++++++|++|+++.|.+..++ ..+..+++|+.|++..+...
T Consensus 78 ~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~--------------- 141 (477)
T 2id5_A 78 NLFNLRTLGLRSNR-LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLV--------------- 141 (477)
T ss_dssp TCTTCCEEECCSSC-CCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCC---------------
T ss_pred CCccCCEEECCCCc-CCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccc---------------
Confidence 99999999999998 8888875 788999999999888777663 44666777766664322111
Q ss_pred cccccccceEEeccCCCCChhHHHHhccCCCCCCCeEEEEEecccccccCCcccccccchhhHHHHhhcCCCCCCCcEEE
Q 037953 252 HLNHLRGSLKVRGLGNVADVDEVKNAHLEKKKNLVRLILRFKDIDKAVKRWPEAISNENAAKHEAICEALWPPPNLESLE 331 (625)
Q Consensus 252 ~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~ 331 (625)
...+..+..+++|+.|++++|.++ ......+..+++|+.|+
T Consensus 142 ---------------------~~~~~~~~~l~~L~~L~l~~n~l~------------------~~~~~~l~~l~~L~~L~ 182 (477)
T 2id5_A 142 ---------------------YISHRAFSGLNSLEQLTLEKCNLT------------------SIPTEALSHLHGLIVLR 182 (477)
T ss_dssp ---------------------EECTTSSTTCTTCCEEEEESCCCS------------------SCCHHHHTTCTTCCEEE
T ss_pred ---------------------eeChhhccCCCCCCEEECCCCcCc------------------ccChhHhcccCCCcEEe
Confidence 111224667788999999988532 11223467789999999
Q ss_pred EeccCCCcccCCchhhcccccccEEEEeCCCCCCCCCC-CCCCCCcceeeccccccceeeCccCCCCCCCCCCCCCCCCC
Q 037953 332 IAGFRGRKMMLSTNWMASLNMLKKLRLLNCPTCEIMPP-LGQLPSLEILLIKDMTSVERVGDESLGIANGDHGAPSSSSV 410 (625)
Q Consensus 332 L~~~~~~~~~~~p~~l~~l~~L~~L~L~~c~~l~~l~~-l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 410 (625)
++++...... +..+..+++|+.|++++|...+.++. .....+|+.|++++|. ++.+|...
T Consensus 183 l~~n~i~~~~--~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~---------------- 243 (477)
T 2id5_A 183 LRHLNINAIR--DYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCN-LTAVPYLA---------------- 243 (477)
T ss_dssp EESCCCCEEC--TTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSC-CCSCCHHH----------------
T ss_pred CCCCcCcEeC--hhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCc-ccccCHHH----------------
Confidence 9999887762 55778999999999999988887774 5556699999999976 66665432
Q ss_pred CCCCCCCCCeeeccCcccccccccCCCCcccCCCccEEEEecCCCCCc-CCcCCCCCCCCCEEEEecCcchhhccccccc
Q 037953 411 NNIAFPKLKELEFSGLQEWEDWDFRKEDITIMPQINSLSIYGCHKLKS-LPDQLLQSSTLKTLRINRCRVLEEHFKKDRS 489 (625)
Q Consensus 411 ~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~-lp~~~~~l~~L~~L~l~~c~~L~~~~~~~~~ 489 (625)
+..+++|+.|+++++. +..+.. ..+..+++|+.|++++| .++. .|..+..+++|++|++++| .++.++...+.
T Consensus 244 -~~~l~~L~~L~Ls~n~-l~~~~~--~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~ 317 (477)
T 2id5_A 244 -VRHLVYLRFLNLSYNP-ISTIEG--SMLHELLRLQEIQLVGG-QLAVVEPYAFRGLNYLRVLNVSGN-QLTTLEESVFH 317 (477)
T ss_dssp -HTTCTTCCEEECCSSC-CCEECT--TSCTTCTTCCEEECCSS-CCSEECTTTBTTCTTCCEEECCSS-CCSCCCGGGBS
T ss_pred -hcCccccCeeECCCCc-CCccCh--hhccccccCCEEECCCC-ccceECHHHhcCcccCCEEECCCC-cCceeCHhHcC
Confidence 5678999999999874 444332 22457899999999996 5655 4777888999999999999 45666544556
Q ss_pred ccCCCCceEEecCCCC
Q 037953 490 KISHIPDIQIYERGPG 505 (625)
Q Consensus 490 ~l~~l~~l~~~~~~~~ 505 (625)
.+.++..+.+.++...
T Consensus 318 ~l~~L~~L~l~~N~l~ 333 (477)
T 2id5_A 318 SVGNLETLILDSNPLA 333 (477)
T ss_dssp CGGGCCEEECCSSCEE
T ss_pred CCcccCEEEccCCCcc
Confidence 6777888887766543
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.2e-23 Score=233.15 Aligned_cols=300 Identities=14% Similarity=0.107 Sum_probs=232.9
Q ss_pred CCceEEEEEEcCCCCcchhh-hccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhhhc
Q 037953 71 PEKLRHLMLVLGYEAPSLVS-IFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEILN 149 (625)
Q Consensus 71 ~~~lr~L~l~~~~~~~~~~~-~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp~ 149 (625)
..+++.+++.++.+..+|+. +..+++|++|++++|. +....| ..|+.+++|++|+|+ +|.+..+|.
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~--l~~~~~---~~~~~l~~L~~L~L~--------~n~l~~~~~ 116 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQ--IEEIDT---YAFAYAHTIQKLYMG--------FNAIRYLPP 116 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSC--CCEECT---TTTTTCTTCCEEECC--------SSCCCCCCT
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCC--CCCCCh---HHhcCCCCCCEEECC--------CCcCCCCCH
Confidence 46789999999999888865 6789999999999975 556666 789999999999999 888877754
Q ss_pred -ccccccccceecC-CC-CCCCchh-hcCCCCCceEeecCCCCCCcccc-ccccccccceEEecCcccccccccCCCccc
Q 037953 150 -GVEKLIHLRYLKL-NL-VGDLPEK-CCELLNLQTLELENSSHFKRFPQ-GIGKLINLRHLIFTEDLLEYMPKGIEKLTS 224 (625)
Q Consensus 150 -~~~~L~~L~~L~L-~~-l~~lP~~-i~~L~~L~~L~L~~~~~l~~lp~-~l~~L~~L~~L~l~~~~l~~lp~~i~~L~~ 224 (625)
.|+++++|++|+| ++ +..+|.. ++++++|++|+|++|. +..+|+ .++++++|++|++++|.++.+| ++.+++
T Consensus 117 ~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~l~~ 193 (597)
T 3oja_B 117 HVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPS 193 (597)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECTTSCCSBCC--GGGCTT
T ss_pred HHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCc-CCCCChhhhhcCCcCcEEECcCCCCCCcC--hhhhhh
Confidence 5799999999999 44 8899877 5899999999999998 776655 5999999999999989888875 556778
Q ss_pred cccCCceEecCCCCcCCCcccChhccccccccccceEEeccCCCCChhHHHHhccCCCCCCCeEEEEEecccccccCCcc
Q 037953 225 LRTLSEFVVASGGGRYGSEACKLEGLRHLNHLRGSLKVRGLGNVADVDEVKNAHLEKKKNLVRLILRFKDIDKAVKRWPE 304 (625)
Q Consensus 225 L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 304 (625)
|+.|++..+. +..+.....|+ .|.+++..- .... ....++|+.|++++|.++
T Consensus 194 L~~L~l~~n~------------l~~l~~~~~L~-~L~ls~n~l-~~~~------~~~~~~L~~L~L~~n~l~-------- 245 (597)
T 3oja_B 194 LFHANVSYNL------------LSTLAIPIAVE-ELDASHNSI-NVVR------GPVNVELTILKLQHNNLT-------- 245 (597)
T ss_dssp CSEEECCSSC------------CSEEECCTTCS-EEECCSSCC-CEEE------CSCCSCCCEEECCSSCCC--------
T ss_pred hhhhhcccCc------------cccccCCchhh-eeeccCCcc-cccc------cccCCCCCEEECCCCCCC--------
Confidence 8877765332 22233344555 666665321 1111 112368999999988643
Q ss_pred cccccchhhHHHHhhcCCCCCCCcEEEEeccCCCcccCCchhhcccccccEEEEeCCCCCCCCCC-CCCCCCcceeeccc
Q 037953 305 AISNENAAKHEAICEALWPPPNLESLEIAGFRGRKMMLSTNWMASLNMLKKLRLLNCPTCEIMPP-LGQLPSLEILLIKD 383 (625)
Q Consensus 305 ~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~p~~l~~l~~L~~L~L~~c~~l~~l~~-l~~l~~L~~L~L~~ 383 (625)
-+..+..+++|+.|++++|...... |..+..+++|+.|+|++|. +..+|. .+.+++|+.|+|++
T Consensus 246 ------------~~~~l~~l~~L~~L~Ls~N~l~~~~--~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~Ls~ 310 (597)
T 3oja_B 246 ------------DTAWLLNYPGLVEVDLSYNELEKIM--YHPFVKMQRLERLYISNNR-LVALNLYGQPIPTLKVLDLSH 310 (597)
T ss_dssp ------------CCGGGGGCTTCSEEECCSSCCCEEE--SGGGTTCSSCCEEECTTSC-CCEEECSSSCCTTCCEEECCS
T ss_pred ------------CChhhccCCCCCEEECCCCccCCCC--HHHhcCccCCCEEECCCCC-CCCCCcccccCCCCcEEECCC
Confidence 1245677899999999999877653 7889999999999999964 555664 66799999999999
Q ss_pred cccceeeCccCCCCCCCCCCCCCCCCCCCCCCCCCCeeeccCcccccccccCCCCcccCCCccEEEEecCC
Q 037953 384 MTSVERVGDESLGIANGDHGAPSSSSVNNIAFPKLKELEFSGLQEWEDWDFRKEDITIMPQINSLSIYGCH 454 (625)
Q Consensus 384 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~ 454 (625)
|. +..+|.. +..+++|+.|+++++. +..++ +..+++|+.|++++|+
T Consensus 311 N~-l~~i~~~------------------~~~l~~L~~L~L~~N~-l~~~~-----~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 311 NH-LLHVERN------------------QPQFDRLENLYLDHNS-IVTLK-----LSTHHTLKNLTLSHND 356 (597)
T ss_dssp SC-CCCCGGG------------------HHHHTTCSEEECCSSC-CCCCC-----CCTTCCCSEEECCSSC
T ss_pred CC-CCccCcc------------------cccCCCCCEEECCCCC-CCCcC-----hhhcCCCCEEEeeCCC
Confidence 86 6666654 5678999999999874 44443 3378999999999975
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
Probab=99.89 E-value=1.5e-23 Score=223.62 Aligned_cols=182 Identities=13% Similarity=0.020 Sum_probs=104.8
Q ss_pred CCceEEEEEEcCCCCcchhhhccCCcceEEEeecccCCccccCchhhHHHhcCCce-------------eEEEeecCCCc
Q 037953 71 PEKLRHLMLVLGYEAPSLVSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCL-------------RALRIEGTDNW 137 (625)
Q Consensus 71 ~~~lr~L~l~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~L-------------r~L~Ls~c~~~ 137 (625)
...++.+.+++|.++.+|+++.++++|++|++++|. +.+.+| ..++++++| ++|+++
T Consensus 10 ~~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~--~~~~~p---~~~~~l~~L~~l~l~~c~~~~l~~L~l~----- 79 (454)
T 1jl5_A 10 NTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSE--WERNAP---PGNGEQREMAVSRLRDCLDRQAHELELN----- 79 (454)
T ss_dssp ------------------------CCHHHHHHHHHH--HHHTSC---TTSCCCHHHHHHHHHHHHHHTCSEEECT-----
T ss_pred cccchhhhcccCchhhCChhHhcccchhhhhccCCc--ccccCC---cccccchhcchhhhhhhhccCCCEEEec-----
Confidence 467999999999999999999999999999999975 566777 778887765 888998
Q ss_pred cccccchhhhhcccccccccceecC-CC-CCCCchhhcCCCCCceEeecCCCCCCccccccccccccceEEecCcccccc
Q 037953 138 ELEEDQTNEILNGVEKLIHLRYLKL-NL-VGDLPEKCCELLNLQTLELENSSHFKRFPQGIGKLINLRHLIFTEDLLEYM 215 (625)
Q Consensus 138 ~~~~~~l~~lp~~~~~L~~L~~L~L-~~-l~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~l~~L~~L~~L~l~~~~l~~l 215 (625)
+|.+..+|.. .++|++|++ ++ +..+|.. +.+|++|++++|. +..+|.. .++|++|++++|.++.+
T Consensus 80 ---~~~l~~lp~~---~~~L~~L~l~~n~l~~lp~~---~~~L~~L~l~~n~-l~~l~~~---~~~L~~L~L~~n~l~~l 146 (454)
T 1jl5_A 80 ---NLGLSSLPEL---PPHLESLVASCNSLTELPEL---PQSLKSLLVDNNN-LKALSDL---PPLLEYLGVSNNQLEKL 146 (454)
T ss_dssp ---TSCCSCCCSC---CTTCSEEECCSSCCSSCCCC---CTTCCEEECCSSC-CSCCCSC---CTTCCEEECCSSCCSSC
T ss_pred ---CCccccCCCC---cCCCCEEEccCCcCCccccc---cCCCcEEECCCCc-cCcccCC---CCCCCEEECcCCCCCCC
Confidence 7777777752 367888888 44 7778753 3678888888876 6666542 25788888877777777
Q ss_pred cccCCCccccccCCceEecCCCCcCCCcccChhccccccccccceEEeccCCCCChhHHHHhccCCCCCCCeEEEEEec
Q 037953 216 PKGIEKLTSLRTLSEFVVASGGGRYGSEACKLEGLRHLNHLRGSLKVRGLGNVADVDEVKNAHLEKKKNLVRLILRFKD 294 (625)
Q Consensus 216 p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 294 (625)
| .++++++|++|++..+.... .+.. . .+|+ .|.+.+..- .. .+ .+..+++|+.|++++|.
T Consensus 147 p-~~~~l~~L~~L~l~~N~l~~-----lp~~---~---~~L~-~L~L~~n~l-~~----l~-~~~~l~~L~~L~l~~N~ 206 (454)
T 1jl5_A 147 P-ELQNSSFLKIIDVDNNSLKK-----LPDL---P---PSLE-FIAAGNNQL-EE----LP-ELQNLPFLTAIYADNNS 206 (454)
T ss_dssp C-CCTTCTTCCEEECCSSCCSC-----CCCC---C---TTCC-EEECCSSCC-SS----CC-CCTTCTTCCEEECCSSC
T ss_pred c-ccCCCCCCCEEECCCCcCcc-----cCCC---c---cccc-EEECcCCcC-Cc----Cc-cccCCCCCCEEECCCCc
Confidence 7 57777777777765544332 1111 1 2344 555554321 11 11 36677777777777664
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.3e-22 Score=207.20 Aligned_cols=229 Identities=22% Similarity=0.312 Sum_probs=147.4
Q ss_pred cCCceeEEEeecCCCccccccchhhhhcccccccccceecC-CC-CCCCchhhcCCCCCceEeecCCCCCCccccccccc
Q 037953 122 QLTCLRALRIEGTDNWELEEDQTNEILNGVEKLIHLRYLKL-NL-VGDLPEKCCELLNLQTLELENSSHFKRFPQGIGKL 199 (625)
Q Consensus 122 ~l~~Lr~L~Ls~c~~~~~~~~~l~~lp~~~~~L~~L~~L~L-~~-l~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~l~~L 199 (625)
...++++|+|+ +|.+..+|..++++++|++|+| ++ +..+|..++++++|++|+|++|. +..+|..++++
T Consensus 79 ~~~~l~~L~L~--------~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~-l~~lp~~l~~l 149 (328)
T 4fcg_A 79 TQPGRVALELR--------SVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNP-LRALPASIASL 149 (328)
T ss_dssp TSTTCCEEEEE--------SSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCC-CCCCCGGGGGC
T ss_pred cccceeEEEcc--------CCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCc-cccCcHHHhcC
Confidence 34778888888 7777777777777888888888 33 66778778888888888888887 77788788888
Q ss_pred cccceEEe-cCcccccccccCCCccccccCCceEecCCCCcCCCcccChhccccccccccceEEeccCCCCChhHHHHhc
Q 037953 200 INLRHLIF-TEDLLEYMPKGIEKLTSLRTLSEFVVASGGGRYGSEACKLEGLRHLNHLRGSLKVRGLGNVADVDEVKNAH 278 (625)
Q Consensus 200 ~~L~~L~l-~~~~l~~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~ 278 (625)
++|++|++ +|+..+.+|..++.. . + ...
T Consensus 150 ~~L~~L~L~~n~~~~~~p~~~~~~-----------~---------------------~-------------------~~~ 178 (328)
T 4fcg_A 150 NRLRELSIRACPELTELPEPLAST-----------D---------------------A-------------------SGE 178 (328)
T ss_dssp TTCCEEEEEEETTCCCCCSCSEEE-----------C-----------------------------------------CCC
T ss_pred cCCCEEECCCCCCccccChhHhhc-----------c---------------------c-------------------hhh
Confidence 88888888 445555555443220 0 0 001
Q ss_pred cCCCCCCCeEEEEEecccccccCCcccccccchhhHHHHhhcCCCCCCCcEEEEeccCCCcccCCchhhcccccccEEEE
Q 037953 279 LEKKKNLVRLILRFKDIDKAVKRWPEAISNENAAKHEAICEALWPPPNLESLEIAGFRGRKMMLSTNWMASLNMLKKLRL 358 (625)
Q Consensus 279 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~p~~l~~l~~L~~L~L 358 (625)
+..+++|+.|++++|.+ ..++..+..+++|+.|++++|....+ |..+..+++|++|++
T Consensus 179 ~~~l~~L~~L~L~~n~l-------------------~~lp~~l~~l~~L~~L~L~~N~l~~l---~~~l~~l~~L~~L~L 236 (328)
T 4fcg_A 179 HQGLVNLQSLRLEWTGI-------------------RSLPASIANLQNLKSLKIRNSPLSAL---GPAIHHLPKLEELDL 236 (328)
T ss_dssp EEESTTCCEEEEEEECC-------------------CCCCGGGGGCTTCCEEEEESSCCCCC---CGGGGGCTTCCEEEC
T ss_pred hccCCCCCEEECcCCCc-------------------CcchHhhcCCCCCCEEEccCCCCCcC---chhhccCCCCCEEEC
Confidence 33445666666766631 12333444555666666666655554 555556666666666
Q ss_pred eCCCCCCCCCC-CCCCCCcceeeccccccceeeCccCCCCCCCCCCCCCCCCCCCCCCCCCCeeeccCcccccccccCCC
Q 037953 359 LNCPTCEIMPP-LGQLPSLEILLIKDMTSVERVGDESLGIANGDHGAPSSSSVNNIAFPKLKELEFSGLQEWEDWDFRKE 437 (625)
Q Consensus 359 ~~c~~l~~l~~-l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~ 437 (625)
++|...+.+|. ++.+++|+.|++++|+.++.+|. .
T Consensus 237 s~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~------------------------------------------~-- 272 (328)
T 4fcg_A 237 RGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPL------------------------------------------D-- 272 (328)
T ss_dssp TTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCT------------------------------------------T--
T ss_pred cCCcchhhhHHHhcCCCCCCEEECCCCCchhhcch------------------------------------------h--
Confidence 66555555552 55555555555555543333322 1
Q ss_pred CcccCCCccEEEEecCCCCCcCCcCCCCCCCCCEEEEecC
Q 037953 438 DITIMPQINSLSIYGCHKLKSLPDQLLQSSTLKTLRINRC 477 (625)
Q Consensus 438 ~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c 477 (625)
+..+++|++|++++|+.++.+|..+.++++|+.+++..+
T Consensus 273 -~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 273 -IHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH 311 (328)
T ss_dssp -GGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGG
T ss_pred -hhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHH
Confidence 226788888888888888888888888888888877754
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
Probab=99.89 E-value=2.1e-23 Score=211.82 Aligned_cols=246 Identities=17% Similarity=0.173 Sum_probs=197.9
Q ss_pred CceEEEEEEcCCCC---cchhhhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchh-hh
Q 037953 72 EKLRHLMLVLGYEA---PSLVSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTN-EI 147 (625)
Q Consensus 72 ~~lr~L~l~~~~~~---~~~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~-~l 147 (625)
.++++|+++++.+. .+|..+.++++|++|+++++ +.+.+.+| ..|+++++|++|+|+ +|.+. .+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~-n~l~~~~p---~~l~~l~~L~~L~Ls--------~n~l~~~~ 117 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGI-NNLVGPIP---PAIAKLTQLHYLYIT--------HTNVSGAI 117 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEE-TTEESCCC---GGGGGCTTCSEEEEE--------EECCEEEC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCC-CcccccCC---hhHhcCCCCCEEECc--------CCeeCCcC
Confidence 68999999999985 68899999999999999952 23566778 889999999999999 88876 78
Q ss_pred hcccccccccceecC-CC-CC-CCchhhcCCCCCceEeecCCCCCC-cccccccccc-ccceEEecCcccc-cccccCCC
Q 037953 148 LNGVEKLIHLRYLKL-NL-VG-DLPEKCCELLNLQTLELENSSHFK-RFPQGIGKLI-NLRHLIFTEDLLE-YMPKGIEK 221 (625)
Q Consensus 148 p~~~~~L~~L~~L~L-~~-l~-~lP~~i~~L~~L~~L~L~~~~~l~-~lp~~l~~L~-~L~~L~l~~~~l~-~lp~~i~~ 221 (625)
|..|+++++|++|++ .+ +. .+|..++++++|++|++++|. +. .+|..+++++ +|++|+++.|.+. .+|..++.
T Consensus 118 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~-l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~ 196 (313)
T 1ogq_A 118 PDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNR-ISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFAN 196 (313)
T ss_dssp CGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSC-CEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGG
T ss_pred CHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCc-ccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhC
Confidence 888999999999999 44 54 889999999999999999998 66 8999999998 9999999888776 66766766
Q ss_pred ccccccCCceEecCCCCcCCCcccChhccccccccccceEEeccCCCCChhHHHHhccCCCCCCCeEEEEEecccccccC
Q 037953 222 LTSLRTLSEFVVASGGGRYGSEACKLEGLRHLNHLRGSLKVRGLGNVADVDEVKNAHLEKKKNLVRLILRFKDIDKAVKR 301 (625)
Q Consensus 222 L~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 301 (625)
++ |+.|++..+... +..+..+..+++|+.|++++|.++
T Consensus 197 l~-L~~L~Ls~N~l~------------------------------------~~~~~~~~~l~~L~~L~L~~N~l~----- 234 (313)
T 1ogq_A 197 LN-LAFVDLSRNMLE------------------------------------GDASVLFGSDKNTQKIHLAKNSLA----- 234 (313)
T ss_dssp CC-CSEEECCSSEEE------------------------------------ECCGGGCCTTSCCSEEECCSSEEC-----
T ss_pred Cc-ccEEECcCCccc------------------------------------CcCCHHHhcCCCCCEEECCCCcee-----
Confidence 65 655554322111 112234667788888888877532
Q ss_pred CcccccccchhhHHHHhhcCCCCCCCcEEEEeccCCC-cccCCchhhcccccccEEEEeCCCCCCCCCCCCCCCCcceee
Q 037953 302 WPEAISNENAAKHEAICEALWPPPNLESLEIAGFRGR-KMMLSTNWMASLNMLKKLRLLNCPTCEIMPPLGQLPSLEILL 380 (625)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~-~~~~~p~~l~~l~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~ 380 (625)
..+..+..+++|+.|++++|... .. |.++..+++|+.|++++|...+.+|..+.+++|+.|+
T Consensus 235 --------------~~~~~~~~l~~L~~L~Ls~N~l~~~~---p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~ 297 (313)
T 1ogq_A 235 --------------FDLGKVGLSKNLNGLDLRNNRIYGTL---PQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSA 297 (313)
T ss_dssp --------------CBGGGCCCCTTCCEEECCSSCCEECC---CGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGG
T ss_pred --------------eecCcccccCCCCEEECcCCcccCcC---ChHHhcCcCCCEEECcCCcccccCCCCccccccChHH
Confidence 12233677899999999999887 44 9999999999999999987777888888999999999
Q ss_pred cccccccee
Q 037953 381 IKDMTSVER 389 (625)
Q Consensus 381 L~~~~~l~~ 389 (625)
+++|+.+..
T Consensus 298 l~~N~~lc~ 306 (313)
T 1ogq_A 298 YANNKCLCG 306 (313)
T ss_dssp TCSSSEEES
T ss_pred hcCCCCccC
Confidence 999885544
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=4.1e-22 Score=204.04 Aligned_cols=242 Identities=17% Similarity=0.148 Sum_probs=139.2
Q ss_pred ceEEEEEEcCCCCcchhhhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhh-hccc
Q 037953 73 KLRHLMLVLGYEAPSLVSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEI-LNGV 151 (625)
Q Consensus 73 ~lr~L~l~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~l-p~~~ 151 (625)
+++.+.+.++.+..+|..+. +++++|++++|. +....+ ..|+++++|++|+|+ +|.+..+ |..|
T Consensus 32 ~l~~l~~~~~~l~~lp~~~~--~~l~~L~L~~n~--i~~~~~---~~~~~l~~L~~L~L~--------~n~l~~~~~~~~ 96 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNK--ITEIKD---GDFKNLKNLHTLILI--------NNKISKISPGAF 96 (330)
T ss_dssp ETTEEECTTSCCCSCCCSCC--TTCCEEECCSSC--CCCBCT---TTTTTCTTCCEEECC--------SSCCCCBCTTTT
T ss_pred CCeEEEecCCCccccCccCC--CCCeEEECCCCc--CCEeCh---hhhccCCCCCEEECC--------CCcCCeeCHHHh
Confidence 45556666666666665443 566677777654 333333 456667777777777 6665555 5566
Q ss_pred ccccccceecC-CC-CCCCchhhcCCCCCceEeecCCCCCCccccc-cccccccceEEecCccccc---ccccCCCcccc
Q 037953 152 EKLIHLRYLKL-NL-VGDLPEKCCELLNLQTLELENSSHFKRFPQG-IGKLINLRHLIFTEDLLEY---MPKGIEKLTSL 225 (625)
Q Consensus 152 ~~L~~L~~L~L-~~-l~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~-l~~L~~L~~L~l~~~~l~~---lp~~i~~L~~L 225 (625)
+++++|++|++ .+ +..+|..+. ++|++|++++|. +..++.. +.++++|++|+++.|.+.. .|..++++++|
T Consensus 97 ~~l~~L~~L~Ls~n~l~~l~~~~~--~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L 173 (330)
T 1xku_A 97 APLVKLERLYLSKNQLKELPEKMP--KTLQELRVHENE-ITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKL 173 (330)
T ss_dssp TTCTTCCEEECCSSCCSBCCSSCC--TTCCEEECCSSC-CCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTC
T ss_pred cCCCCCCEEECCCCcCCccChhhc--ccccEEECCCCc-ccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCc
Confidence 66677777777 33 666665554 566777777666 5555443 5666667777665555542 22334444444
Q ss_pred ccCCceEecCCCCcCCCcccChhccccccccccceEEeccCCCCChhHHHHhccCCCCCCCeEEEEEecccccccCCccc
Q 037953 226 RTLSEFVVASGGGRYGSEACKLEGLRHLNHLRGSLKVRGLGNVADVDEVKNAHLEKKKNLVRLILRFKDIDKAVKRWPEA 305 (625)
Q Consensus 226 ~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~ 305 (625)
+.|++..+.... + +..+ .++|+.|++++|.++
T Consensus 174 ~~L~l~~n~l~~---------------------------------l----~~~~--~~~L~~L~l~~n~l~--------- 205 (330)
T 1xku_A 174 SYIRIADTNITT---------------------------------I----PQGL--PPSLTELHLDGNKIT--------- 205 (330)
T ss_dssp CEEECCSSCCCS---------------------------------C----CSSC--CTTCSEEECTTSCCC---------
T ss_pred CEEECCCCcccc---------------------------------C----Cccc--cccCCEEECCCCcCC---------
Confidence 444332211110 0 0001 145666666655321
Q ss_pred ccccchhhHHHHhhcCCCCCCCcEEEEeccCCCcccCCchhhcccccccEEEEeCCCCCCCCC-CCCCCCCcceeecccc
Q 037953 306 ISNENAAKHEAICEALWPPPNLESLEIAGFRGRKMMLSTNWMASLNMLKKLRLLNCPTCEIMP-PLGQLPSLEILLIKDM 384 (625)
Q Consensus 306 ~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~p~~l~~l~~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~L~~~ 384 (625)
...+..+..+++|+.|++++|...... +.++..+++|+.|++++| .+..+| .+..+++|++|++++|
T Consensus 206 ---------~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N 273 (330)
T 1xku_A 206 ---------KVDAASLKGLNNLAKLGLSFNSISAVD--NGSLANTPHLRELHLNNN-KLVKVPGGLADHKYIQVVYLHNN 273 (330)
T ss_dssp ---------EECTGGGTTCTTCCEEECCSSCCCEEC--TTTGGGSTTCCEEECCSS-CCSSCCTTTTTCSSCCEEECCSS
T ss_pred ---------ccCHHHhcCCCCCCEEECCCCcCceeC--hhhccCCCCCCEEECCCC-cCccCChhhccCCCcCEEECCCC
Confidence 112345566777777777777766541 346777778888888775 344665 4677778888888776
Q ss_pred ccceeeCcc
Q 037953 385 TSVERVGDE 393 (625)
Q Consensus 385 ~~l~~l~~~ 393 (625)
. ++.++..
T Consensus 274 ~-i~~~~~~ 281 (330)
T 1xku_A 274 N-ISAIGSN 281 (330)
T ss_dssp C-CCCCCTT
T ss_pred c-CCccChh
Confidence 5 5555543
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.87 E-value=2e-22 Score=205.81 Aligned_cols=220 Identities=20% Similarity=0.209 Sum_probs=138.3
Q ss_pred CCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhhhcccccccccceecC-CC-CCCCchh
Q 037953 94 AIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEILNGVEKLIHLRYLKL-NL-VGDLPEK 171 (625)
Q Consensus 94 l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp~~~~~L~~L~~L~L-~~-l~~lP~~ 171 (625)
.+++++|++++|. ...+| ..+.++++|++|+|+ +|.+..+|..++++++|++|+| ++ +..+|..
T Consensus 80 ~~~l~~L~L~~n~---l~~lp---~~l~~l~~L~~L~L~--------~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~ 145 (328)
T 4fcg_A 80 QPGRVALELRSVP---LPQFP---DQAFRLSHLQHMTID--------AAGLMELPDTMQQFAGLETLTLARNPLRALPAS 145 (328)
T ss_dssp STTCCEEEEESSC---CSSCC---SCGGGGTTCSEEEEE--------SSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGG
T ss_pred ccceeEEEccCCC---chhcC---hhhhhCCCCCEEECC--------CCCccchhHHHhccCCCCEEECCCCccccCcHH
Confidence 3566666666654 22444 456666666666666 6665566666666666666666 33 5566666
Q ss_pred hcCCCCCceEeecCCCCCCcccccccc---------ccccceEEecCcccccccccCCCccccccCCceEecCCCCcCCC
Q 037953 172 CCELLNLQTLELENSSHFKRFPQGIGK---------LINLRHLIFTEDLLEYMPKGIEKLTSLRTLSEFVVASGGGRYGS 242 (625)
Q Consensus 172 i~~L~~L~~L~L~~~~~l~~lp~~l~~---------L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~~~~~~~~~~~~~~ 242 (625)
++++++|++|++++|..++.+|..++. +++|++|++++|.++.+|..++++++|++|++..+....
T Consensus 146 l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~----- 220 (328)
T 4fcg_A 146 IASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSA----- 220 (328)
T ss_dssp GGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCC-----
T ss_pred HhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCc-----
Confidence 666667777777666556666665543 667777777666666666666666666666544332211
Q ss_pred cccChhccccccccccceEEeccCCCCChhHHHHhccCCCCCCCeEEEEEecccccccCCcccccccchhhHHHHhhcCC
Q 037953 243 EACKLEGLRHLNHLRGSLKVRGLGNVADVDEVKNAHLEKKKNLVRLILRFKDIDKAVKRWPEAISNENAAKHEAICEALW 322 (625)
Q Consensus 243 ~~~~l~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 322 (625)
... .+..+++|+.|++++|.+ ...++..+.
T Consensus 221 ---l~~-----------------------------~l~~l~~L~~L~Ls~n~~------------------~~~~p~~~~ 250 (328)
T 4fcg_A 221 ---LGP-----------------------------AIHHLPKLEELDLRGCTA------------------LRNYPPIFG 250 (328)
T ss_dssp ---CCG-----------------------------GGGGCTTCCEEECTTCTT------------------CCBCCCCTT
T ss_pred ---Cch-----------------------------hhccCCCCCEEECcCCcc------------------hhhhHHHhc
Confidence 000 122334445555554431 122344566
Q ss_pred CCCCCcEEEEeccCCCcccCCchhhcccccccEEEEeCCCCCCCCCC-CCCCCCcceeecccc
Q 037953 323 PPPNLESLEIAGFRGRKMMLSTNWMASLNMLKKLRLLNCPTCEIMPP-LGQLPSLEILLIKDM 384 (625)
Q Consensus 323 ~~~~L~~L~L~~~~~~~~~~~p~~l~~l~~L~~L~L~~c~~l~~l~~-l~~l~~L~~L~L~~~ 384 (625)
.+++|+.|++++|...... |.++..+++|+.|+|++|+..+.+|. ++.+++|+.+.+..+
T Consensus 251 ~l~~L~~L~L~~n~~~~~~--p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 251 GRAPLKRLILKDCSNLLTL--PLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH 311 (328)
T ss_dssp CCCCCCEEECTTCTTCCBC--CTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGG
T ss_pred CCCCCCEEECCCCCchhhc--chhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHH
Confidence 6777888888776654432 88888889999999998888888884 888888888888753
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.87 E-value=3.1e-22 Score=205.16 Aligned_cols=239 Identities=21% Similarity=0.208 Sum_probs=124.1
Q ss_pred ceEEEEEEcCCCCcchhhhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhh-hccc
Q 037953 73 KLRHLMLVLGYEAPSLVSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEI-LNGV 151 (625)
Q Consensus 73 ~lr~L~l~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~l-p~~~ 151 (625)
+++.+.++++.+..+|..+. ++|++|++++|. +....| ..|.++++|++|+++ +|.+..+ |..|
T Consensus 34 ~l~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~--i~~~~~---~~~~~l~~L~~L~L~--------~n~l~~~~~~~~ 98 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEIS--PDTTLLDLQNND--ISELRK---DDFKGLQHLYALVLV--------NNKISKIHEKAF 98 (332)
T ss_dssp ETTEEECCSSCCSSCCSCCC--TTCCEEECCSSC--CCEECT---TTTTTCTTCCEEECC--------SSCCCEECGGGS
T ss_pred cCCEEECCCCCccccCCCCC--CCCeEEECCCCc--CCccCH---hHhhCCCCCcEEECC--------CCccCccCHhHh
Confidence 34555565555555555432 456666666643 333334 455666666666666 5555544 4456
Q ss_pred ccccccceecC-CC-CCCCchhhcCCCCCceEeecCCCCCCccccc-cccccccceEEecCccccc---ccccCCCcccc
Q 037953 152 EKLIHLRYLKL-NL-VGDLPEKCCELLNLQTLELENSSHFKRFPQG-IGKLINLRHLIFTEDLLEY---MPKGIEKLTSL 225 (625)
Q Consensus 152 ~~L~~L~~L~L-~~-l~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~-l~~L~~L~~L~l~~~~l~~---lp~~i~~L~~L 225 (625)
+++++|++|++ .+ +..+|..+. ++|++|++++|. +..+|.. ++++++|++|++++|.++. .|..++.+ +|
T Consensus 99 ~~l~~L~~L~L~~n~l~~l~~~~~--~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L 174 (332)
T 2ft3_A 99 SPLRKLQKLYISKNHLVEIPPNLP--SSLVELRIHDNR-IRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KL 174 (332)
T ss_dssp TTCTTCCEEECCSSCCCSCCSSCC--TTCCEEECCSSC-CCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CC
T ss_pred hCcCCCCEEECCCCcCCccCcccc--ccCCEEECCCCc-cCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-cc
Confidence 66666666666 33 555655544 566666666665 5555543 5556666666665555432 22233333 44
Q ss_pred ccCCceEecCCCCcCCCcccChhccccccccccceEEeccCCCCChhHHHHhccCCCCCCCeEEEEEecccccccCCccc
Q 037953 226 RTLSEFVVASGGGRYGSEACKLEGLRHLNHLRGSLKVRGLGNVADVDEVKNAHLEKKKNLVRLILRFKDIDKAVKRWPEA 305 (625)
Q Consensus 226 ~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~ 305 (625)
+.|++..+.... ++..+ .++|+.|++++|.++
T Consensus 175 ~~L~l~~n~l~~-------------------------------------l~~~~--~~~L~~L~l~~n~i~--------- 206 (332)
T 2ft3_A 175 NYLRISEAKLTG-------------------------------------IPKDL--PETLNELHLDHNKIQ--------- 206 (332)
T ss_dssp SCCBCCSSBCSS-------------------------------------CCSSS--CSSCSCCBCCSSCCC---------
T ss_pred CEEECcCCCCCc-------------------------------------cCccc--cCCCCEEECCCCcCC---------
Confidence 444432221111 00001 135555555555321
Q ss_pred ccccchhhHHHHhhcCCCCCCCcEEEEeccCCCcccCCchhhcccccccEEEEeCCCCCCCCCC-CCCCCCcceeecccc
Q 037953 306 ISNENAAKHEAICEALWPPPNLESLEIAGFRGRKMMLSTNWMASLNMLKKLRLLNCPTCEIMPP-LGQLPSLEILLIKDM 384 (625)
Q Consensus 306 ~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~p~~l~~l~~L~~L~L~~c~~l~~l~~-l~~l~~L~~L~L~~~ 384 (625)
...+..+..+++|+.|++++|...... +.++..+++|+.|++++| .+..+|. ++.+++|+.|++++|
T Consensus 207 ---------~~~~~~l~~l~~L~~L~L~~N~l~~~~--~~~~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N 274 (332)
T 2ft3_A 207 ---------AIELEDLLRYSKLYRLGLGHNQIRMIE--NGSLSFLPTLRELHLDNN-KLSRVPAGLPDLKLLQVVYLHTN 274 (332)
T ss_dssp ---------CCCTTSSTTCTTCSCCBCCSSCCCCCC--TTGGGGCTTCCEEECCSS-CCCBCCTTGGGCTTCCEEECCSS
T ss_pred ---------ccCHHHhcCCCCCCEEECCCCcCCcCC--hhHhhCCCCCCEEECCCC-cCeecChhhhcCccCCEEECCCC
Confidence 111234555666666666666655541 345666677777777664 3445553 566667777777665
Q ss_pred ccceeeC
Q 037953 385 TSVERVG 391 (625)
Q Consensus 385 ~~l~~l~ 391 (625)
. ++.++
T Consensus 275 ~-l~~~~ 280 (332)
T 2ft3_A 275 N-ITKVG 280 (332)
T ss_dssp C-CCBCC
T ss_pred C-CCccC
Confidence 4 44444
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.87 E-value=4.4e-22 Score=204.01 Aligned_cols=239 Identities=17% Similarity=0.140 Sum_probs=182.8
Q ss_pred CCCceEEEEEEcCCCCcch-hhhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhhh
Q 037953 70 CPEKLRHLMLVLGYEAPSL-VSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEIL 148 (625)
Q Consensus 70 ~~~~lr~L~l~~~~~~~~~-~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp 148 (625)
.+++++.|++++|.+..++ ..+.++++|++|++++|. +....| ..|+++++|++|+++ +|.+..+|
T Consensus 52 ~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~--l~~~~~---~~~~~l~~L~~L~L~--------~n~l~~l~ 118 (332)
T 2ft3_A 52 ISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNK--ISKIHE---KAFSPLRKLQKLYIS--------KNHLVEIP 118 (332)
T ss_dssp CCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC--CCEECG---GGSTTCTTCCEEECC--------SSCCCSCC
T ss_pred CCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCc--cCccCH---hHhhCcCCCCEEECC--------CCcCCccC
Confidence 3578999999999997775 578999999999999975 456667 889999999999999 99988998
Q ss_pred cccccccccceecC-CC-CCCCchh-hcCCCCCceEeecCCCCCC---ccccccccccccceEEecCcccccccccCCCc
Q 037953 149 NGVEKLIHLRYLKL-NL-VGDLPEK-CCELLNLQTLELENSSHFK---RFPQGIGKLINLRHLIFTEDLLEYMPKGIEKL 222 (625)
Q Consensus 149 ~~~~~L~~L~~L~L-~~-l~~lP~~-i~~L~~L~~L~L~~~~~l~---~lp~~l~~L~~L~~L~l~~~~l~~lp~~i~~L 222 (625)
..+. ++|++|++ ++ +..+|.. +.++++|++|++++|. ++ ..|..+..+ +|++|+++.|.++.+|..+.
T Consensus 119 ~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~~~~~-- 192 (332)
T 2ft3_A 119 PNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNP-LENSGFEPGAFDGL-KLNYLRISEAKLTGIPKDLP-- 192 (332)
T ss_dssp SSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCC-CBGGGSCTTSSCSC-CCSCCBCCSSBCSSCCSSSC--
T ss_pred cccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCc-cccCCCCcccccCC-ccCEEECcCCCCCccCcccc--
Confidence 7766 89999999 44 8888764 8999999999999998 65 345667777 99999999999999988764
Q ss_pred cccccCCceEecCCCCcCCCcccChhccccccccccceEEeccCCCCChhHHHHhccCCCCCCCeEEEEEecccccccCC
Q 037953 223 TSLRTLSEFVVASGGGRYGSEACKLEGLRHLNHLRGSLKVRGLGNVADVDEVKNAHLEKKKNLVRLILRFKDIDKAVKRW 302 (625)
Q Consensus 223 ~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 302 (625)
++|++|++..+.... .. +..+..+++|+.|++++|.++
T Consensus 193 ~~L~~L~l~~n~i~~-------~~-----------------------------~~~l~~l~~L~~L~L~~N~l~------ 230 (332)
T 2ft3_A 193 ETLNELHLDHNKIQA-------IE-----------------------------LEDLLRYSKLYRLGLGHNQIR------ 230 (332)
T ss_dssp SSCSCCBCCSSCCCC-------CC-----------------------------TTSSTTCTTCSCCBCCSSCCC------
T ss_pred CCCCEEECCCCcCCc-------cC-----------------------------HHHhcCCCCCCEEECCCCcCC------
Confidence 677777765443222 00 112444556666666665422
Q ss_pred cccccccchhhHHHHhhcCCCCCCCcEEEEeccCCCcccCCchhhcccccccEEEEeCCCCCCCCCC--CCC------CC
Q 037953 303 PEAISNENAAKHEAICEALWPPPNLESLEIAGFRGRKMMLSTNWMASLNMLKKLRLLNCPTCEIMPP--LGQ------LP 374 (625)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~p~~l~~l~~L~~L~L~~c~~l~~l~~--l~~------l~ 374 (625)
...+..+..+++|+.|++++|....+ |.++..+++|+.|++++|. ++.++. +.. .+
T Consensus 231 ------------~~~~~~~~~l~~L~~L~L~~N~l~~l---p~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~~~~~~ 294 (332)
T 2ft3_A 231 ------------MIENGSLSFLPTLRELHLDNNKLSRV---PAGLPDLKLLQVVYLHTNN-ITKVGVNDFCPVGFGVKRA 294 (332)
T ss_dssp ------------CCCTTGGGGCTTCCEEECCSSCCCBC---CTTGGGCTTCCEEECCSSC-CCBCCTTSSSCSSCCSSSC
T ss_pred ------------cCChhHhhCCCCCCEEECCCCcCeec---ChhhhcCccCCEEECCCCC-CCccChhHccccccccccc
Confidence 11122456678899999998888877 8889999999999999854 555542 222 57
Q ss_pred Ccceeeccccc
Q 037953 375 SLEILLIKDMT 385 (625)
Q Consensus 375 ~L~~L~L~~~~ 385 (625)
+|+.|++++|+
T Consensus 295 ~l~~L~l~~N~ 305 (332)
T 2ft3_A 295 YYNGISLFNNP 305 (332)
T ss_dssp CBSEEECCSSS
T ss_pred cccceEeecCc
Confidence 78999999877
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
Probab=99.87 E-value=1.4e-21 Score=208.44 Aligned_cols=295 Identities=19% Similarity=0.171 Sum_probs=155.9
Q ss_pred eEEEEEEcCCCCcchhhhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhhhccccc
Q 037953 74 LRHLMLVLGYEAPSLVSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEILNGVEK 153 (625)
Q Consensus 74 lr~L~l~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp~~~~~ 153 (625)
+++|++.++.+..+|.. .++|++|++++|. +. .+| . .+++|++|+++ +|.+..+|..
T Consensus 73 l~~L~l~~~~l~~lp~~---~~~L~~L~l~~n~--l~-~lp---~---~~~~L~~L~l~--------~n~l~~l~~~--- 129 (454)
T 1jl5_A 73 AHELELNNLGLSSLPEL---PPHLESLVASCNS--LT-ELP---E---LPQSLKSLLVD--------NNNLKALSDL--- 129 (454)
T ss_dssp CSEEECTTSCCSCCCSC---CTTCSEEECCSSC--CS-SCC---C---CCTTCCEEECC--------SSCCSCCCSC---
T ss_pred CCEEEecCCccccCCCC---cCCCCEEEccCCc--CC-ccc---c---ccCCCcEEECC--------CCccCcccCC---
Confidence 46667766666655542 3567777777654 22 244 2 23667777777 6665555421
Q ss_pred ccccceecC--CCCCCCchhhcCCCCCceEeecCCCCCCccccccccccccceEEecCcccccccccCCCccccccCCce
Q 037953 154 LIHLRYLKL--NLVGDLPEKCCELLNLQTLELENSSHFKRFPQGIGKLINLRHLIFTEDLLEYMPKGIEKLTSLRTLSEF 231 (625)
Q Consensus 154 L~~L~~L~L--~~l~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~l~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~~~ 231 (625)
.++|++|++ |.+..+| .++++++|++|++++|. ++.+|..+ .+|++|++++|.++.+| .++++++|+.|++.
T Consensus 130 ~~~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l~~N~-l~~lp~~~---~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~ 203 (454)
T 1jl5_A 130 PPLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNNS-LKKLPDLP---PSLEFIAAGNNQLEELP-ELQNLPFLTAIYAD 203 (454)
T ss_dssp CTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSC-CSCCCCCC---TTCCEEECCSSCCSSCC-CCTTCTTCCEEECC
T ss_pred CCCCCEEECcCCCCCCCc-ccCCCCCCCEEECCCCc-CcccCCCc---ccccEEECcCCcCCcCc-cccCCCCCCEEECC
Confidence 156777777 3366666 46777777777777776 66666543 36677777666666666 46666666666654
Q ss_pred EecCCCCcCCCcccChhccccccccccceEEeccCCCCChhHHHHhccCCCCCCCeEEEEEecccccccCCcccccccch
Q 037953 232 VVASGGGRYGSEACKLEGLRHLNHLRGSLKVRGLGNVADVDEVKNAHLEKKKNLVRLILRFKDIDKAVKRWPEAISNENA 311 (625)
Q Consensus 232 ~~~~~~~~~~~~~~~l~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 311 (625)
.+.... .+... .+|+ .|.++++.- .. ++ .+..+++|+.|++++|.++
T Consensus 204 ~N~l~~-----l~~~~------~~L~-~L~l~~n~l-~~----lp-~~~~l~~L~~L~l~~N~l~--------------- 250 (454)
T 1jl5_A 204 NNSLKK-----LPDLP------LSLE-SIVAGNNIL-EE----LP-ELQNLPFLTTIYADNNLLK--------------- 250 (454)
T ss_dssp SSCCSS-----CCCCC------TTCC-EEECCSSCC-SS----CC-CCTTCTTCCEEECCSSCCS---------------
T ss_pred CCcCCc-----CCCCc------Cccc-EEECcCCcC-Cc----cc-ccCCCCCCCEEECCCCcCC---------------
Confidence 443222 11111 2344 455544321 11 11 2556677777777666421
Q ss_pred hhHHHHhhcCCCCCCCcEEEEeccCCCcccCCchhhcccccccEEEEeCCCCCCCCCCCCCCCCcceeeccccccceeeC
Q 037953 312 AKHEAICEALWPPPNLESLEIAGFRGRKMMLSTNWMASLNMLKKLRLLNCPTCEIMPPLGQLPSLEILLIKDMTSVERVG 391 (625)
Q Consensus 312 ~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~p~~l~~l~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~~~~l~~l~ 391 (625)
.++. .+++|+.|++++|....+ |.+ +++|+.|++++|. +..++.+ .++|+.|++++|. +..++
T Consensus 251 ----~l~~---~~~~L~~L~l~~N~l~~l---~~~---~~~L~~L~ls~N~-l~~l~~~--~~~L~~L~l~~N~-l~~i~ 313 (454)
T 1jl5_A 251 ----TLPD---LPPSLEALNVRDNYLTDL---PEL---PQSLTFLDVSENI-FSGLSEL--PPNLYYLNASSNE-IRSLC 313 (454)
T ss_dssp ----SCCS---CCTTCCEEECCSSCCSCC---CCC---CTTCCEEECCSSC-CSEESCC--CTTCCEEECCSSC-CSEEC
T ss_pred ----cccc---cccccCEEECCCCccccc---Ccc---cCcCCEEECcCCc-cCcccCc--CCcCCEEECcCCc-CCccc
Confidence 1111 135677777776666554 543 2667777776643 3333322 2566666666654 33332
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCCCCeeeccCcccccccccCCCCcccCCCccEEEEecCCCCCcCCcCCCCCCCCCE
Q 037953 392 DESLGIANGDHGAPSSSSVNNIAFPKLKELEFSGLQEWEDWDFRKEDITIMPQINSLSIYGCHKLKSLPDQLLQSSTLKT 471 (625)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~ 471 (625)
. ..++|+.|+++++ ++..++. .+++|+.|++++| .++.+|. .+++|++
T Consensus 314 ~---------------------~~~~L~~L~Ls~N-~l~~lp~------~~~~L~~L~L~~N-~l~~lp~---~l~~L~~ 361 (454)
T 1jl5_A 314 D---------------------LPPSLEELNVSNN-KLIELPA------LPPRLERLIASFN-HLAEVPE---LPQNLKQ 361 (454)
T ss_dssp C---------------------CCTTCCEEECCSS-CCSCCCC------CCTTCCEEECCSS-CCSCCCC---CCTTCCE
T ss_pred C---------------------CcCcCCEEECCCC-ccccccc------cCCcCCEEECCCC-ccccccc---hhhhccE
Confidence 1 0135555555543 2222211 2455555555553 4455554 2455555
Q ss_pred EEEecCcc
Q 037953 472 LRINRCRV 479 (625)
Q Consensus 472 L~l~~c~~ 479 (625)
|++++|+.
T Consensus 362 L~L~~N~l 369 (454)
T 1jl5_A 362 LHVEYNPL 369 (454)
T ss_dssp EECCSSCC
T ss_pred EECCCCCC
Confidence 55555543
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=2e-21 Score=198.94 Aligned_cols=286 Identities=17% Similarity=0.188 Sum_probs=158.3
Q ss_pred cceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhhhc-ccccccccceecC--CCCCCC-chh
Q 037953 96 KLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEILN-GVEKLIHLRYLKL--NLVGDL-PEK 171 (625)
Q Consensus 96 ~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp~-~~~~L~~L~~L~L--~~l~~l-P~~ 171 (625)
++++++++++. ...+| ..+ .++|++|+|+ +|.+..+|. .|+++++|++|+| |.+..+ |..
T Consensus 32 ~l~~l~~~~~~---l~~lp---~~~--~~~l~~L~L~--------~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 95 (330)
T 1xku_A 32 HLRVVQCSDLG---LEKVP---KDL--PPDTALLDLQ--------NNKITEIKDGDFKNLKNLHTLILINNKISKISPGA 95 (330)
T ss_dssp ETTEEECTTSC---CCSCC---CSC--CTTCCEEECC--------SSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTT
T ss_pred CCeEEEecCCC---ccccC---ccC--CCCCeEEECC--------CCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHH
Confidence 57777777654 33344 222 2567777777 666666654 4777777777777 335555 666
Q ss_pred hcCCCCCceEeecCCCCCCccccccccccccceEEecCccccccccc-CCCccccccCCceEecCCCCcCCCcccChhcc
Q 037953 172 CCELLNLQTLELENSSHFKRFPQGIGKLINLRHLIFTEDLLEYMPKG-IEKLTSLRTLSEFVVASGGGRYGSEACKLEGL 250 (625)
Q Consensus 172 i~~L~~L~~L~L~~~~~l~~lp~~l~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~l 250 (625)
++++++|++|++++|. ++.+|..+. ++|++|+++.|.++.++.. ++++++|+.|++..+....
T Consensus 96 ~~~l~~L~~L~Ls~n~-l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~------------- 159 (330)
T 1xku_A 96 FAPLVKLERLYLSKNQ-LKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKS------------- 159 (330)
T ss_dssp TTTCTTCCEEECCSSC-CSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCG-------------
T ss_pred hcCCCCCCEEECCCCc-CCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCc-------------
Confidence 7777777777777776 667766654 5777777766666665533 4555555555543222110
Q ss_pred ccccccccceEEeccCCCCChhHHHHhccCCCCCCCeEEEEEecccccccCCcccccccchhhHHHHhhcCCCCCCCcEE
Q 037953 251 RHLNHLRGSLKVRGLGNVADVDEVKNAHLEKKKNLVRLILRFKDIDKAVKRWPEAISNENAAKHEAICEALWPPPNLESL 330 (625)
Q Consensus 251 ~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L 330 (625)
.+..+..+..+++|+.|++++|.++ .++..+ .++|+.|
T Consensus 160 ---------------------~~~~~~~~~~l~~L~~L~l~~n~l~-------------------~l~~~~--~~~L~~L 197 (330)
T 1xku_A 160 ---------------------SGIENGAFQGMKKLSYIRIADTNIT-------------------TIPQGL--PPSLTEL 197 (330)
T ss_dssp ---------------------GGBCTTGGGGCTTCCEEECCSSCCC-------------------SCCSSC--CTTCSEE
T ss_pred ---------------------cCcChhhccCCCCcCEEECCCCccc-------------------cCCccc--cccCCEE
Confidence 0011123445566677777665321 122222 2577777
Q ss_pred EEeccCCCcccCCchhhcccccccEEEEeCCCCCCCCC-CCCCCCCcceeeccccccceeeCccCCCCCCCCCCCCCCCC
Q 037953 331 EIAGFRGRKMMLSTNWMASLNMLKKLRLLNCPTCEIMP-PLGQLPSLEILLIKDMTSVERVGDESLGIANGDHGAPSSSS 409 (625)
Q Consensus 331 ~L~~~~~~~~~~~p~~l~~l~~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 409 (625)
++++|...... |..+..+++|+.|++++|......+ .++.+++|+.|++++|. ++.+|..
T Consensus 198 ~l~~n~l~~~~--~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~lp~~---------------- 258 (330)
T 1xku_A 198 HLDGNKITKVD--AASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNK-LVKVPGG---------------- 258 (330)
T ss_dssp ECTTSCCCEEC--TGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSC-CSSCCTT----------------
T ss_pred ECCCCcCCccC--HHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCc-CccCChh----------------
Confidence 77777665542 5666777777777777754322222 36667777777777764 5455443
Q ss_pred CCCCCCCCCCeeeccCcccccccccCCC----CcccCCCccEEEEecCCCCC--cCCcCCCCCCCCCEEEEecC
Q 037953 410 VNNIAFPKLKELEFSGLQEWEDWDFRKE----DITIMPQINSLSIYGCHKLK--SLPDQLLQSSTLKTLRINRC 477 (625)
Q Consensus 410 ~~~~~l~~L~~L~L~~~~~l~~~~~~~~----~~~~l~~L~~L~l~~c~~l~--~lp~~~~~l~~L~~L~l~~c 477 (625)
+..+++|++|+++++. ++.++.... .....+.|+.|++++++... ..|..+..+++|+.+++++|
T Consensus 259 --l~~l~~L~~L~l~~N~-i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 259 --LADHKYIQVVYLHNNN-ISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp --TTTCSSCCEEECCSSC-CCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred --hccCCCcCEEECCCCc-CCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEeccc
Confidence 4456667777776542 333221110 00123566666666654321 12334445666666666655
|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=9.6e-21 Score=211.44 Aligned_cols=141 Identities=20% Similarity=0.161 Sum_probs=117.6
Q ss_pred EEcCCCCcchhhhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhhhc-cccccccc
Q 037953 79 LVLGYEAPSLVSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEILN-GVEKLIHL 157 (625)
Q Consensus 79 l~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp~-~~~~L~~L 157 (625)
-++.++.++|..++ +.+++|+|++|. +....| ..|.++++|++|+|+ +|.+..+|+ +|.++++|
T Consensus 38 c~~~~l~~vP~~lp--~~~~~LdLs~N~--i~~l~~---~~f~~l~~L~~L~Ls--------~N~i~~i~~~~f~~L~~L 102 (635)
T 4g8a_A 38 CMELNFYKIPDNLP--FSTKNLDLSFNP--LRHLGS---YSFFSFPELQVLDLS--------RCEIQTIEDGAYQSLSHL 102 (635)
T ss_dssp CTTSCCSSCCSSSC--TTCCEEECTTSC--CCEECT---TTTTTCTTCCEEECT--------TCCCCEECTTTTTTCTTC
T ss_pred CCCCCcCccCCCCC--cCCCEEEeeCCC--CCCCCH---HHHhCCCCCCEEECC--------CCcCCCcChhHhcCCCCC
Confidence 33345678887654 589999999975 556666 789999999999999 999988864 69999999
Q ss_pred ceecC-CC-CCCCch-hhcCCCCCceEeecCCCCCCccccc-cccccccceEEecCccccc--ccccCCCccccccCCce
Q 037953 158 RYLKL-NL-VGDLPE-KCCELLNLQTLELENSSHFKRFPQG-IGKLINLRHLIFTEDLLEY--MPKGIEKLTSLRTLSEF 231 (625)
Q Consensus 158 ~~L~L-~~-l~~lP~-~i~~L~~L~~L~L~~~~~l~~lp~~-l~~L~~L~~L~l~~~~l~~--lp~~i~~L~~L~~L~~~ 231 (625)
++|+| .+ +..+|. .+.++++|++|+|++|. +..+|.. |+++++|++|+++.|.+.. +|..++.+++|++|++.
T Consensus 103 ~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~-l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~ 181 (635)
T 4g8a_A 103 STLILTGNPIQSLALGAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS 181 (635)
T ss_dssp CEEECTTCCCCEECGGGGTTCTTCCEEECTTSC-CCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECC
T ss_pred CEEEccCCcCCCCCHHHhcCCCCCCEEECCCCc-CCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhccc
Confidence 99999 44 988885 57999999999999998 8888865 8999999999998888875 46678889999999876
Q ss_pred EecC
Q 037953 232 VVAS 235 (625)
Q Consensus 232 ~~~~ 235 (625)
.+..
T Consensus 182 ~N~l 185 (635)
T 4g8a_A 182 SNKI 185 (635)
T ss_dssp SSCC
T ss_pred Cccc
Confidence 6544
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
Probab=99.85 E-value=4.2e-22 Score=202.19 Aligned_cols=243 Identities=17% Similarity=0.175 Sum_probs=175.8
Q ss_pred CcceEEEeecccCCccc--cCchhhHHHhcCCceeEEEeecCCCccccc-cch-hhhhcccccccccceecC--CCCC-C
Q 037953 95 IKLRSLILFYWIPNLDA--MLPVLKGIFDQLTCLRALRIEGTDNWELEE-DQT-NEILNGVEKLIHLRYLKL--NLVG-D 167 (625)
Q Consensus 95 ~~Lr~L~L~~~~~~~~~--~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~-~~l-~~lp~~~~~L~~L~~L~L--~~l~-~ 167 (625)
.++++|++++|. +.+ .+| ..|+++++|++|+++ + |.+ +.+|..|+++++|++|+| |.+. .
T Consensus 50 ~~l~~L~L~~~~--l~~~~~~~---~~l~~l~~L~~L~L~--------~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ 116 (313)
T 1ogq_A 50 YRVNNLDLSGLN--LPKPYPIP---SSLANLPYLNFLYIG--------GINNLVGPIPPAIAKLTQLHYLYITHTNVSGA 116 (313)
T ss_dssp CCEEEEEEECCC--CSSCEECC---GGGGGCTTCSEEEEE--------EETTEESCCCGGGGGCTTCSEEEEEEECCEEE
T ss_pred ceEEEEECCCCC--ccCCcccC---hhHhCCCCCCeeeCC--------CCCcccccCChhHhcCCCCCEEECcCCeeCCc
Confidence 689999999975 444 678 889999999999999 6 564 478989999999999999 5565 8
Q ss_pred CchhhcCCCCCceEeecCCCCCC-ccccccccccccceEEecCcccc-cccccCCCcc-ccccCCceEecCCCCcCCCcc
Q 037953 168 LPEKCCELLNLQTLELENSSHFK-RFPQGIGKLINLRHLIFTEDLLE-YMPKGIEKLT-SLRTLSEFVVASGGGRYGSEA 244 (625)
Q Consensus 168 lP~~i~~L~~L~~L~L~~~~~l~-~lp~~l~~L~~L~~L~l~~~~l~-~lp~~i~~L~-~L~~L~~~~~~~~~~~~~~~~ 244 (625)
+|..++++++|++|++++|. +. .+|..++++++|++|+++.|.+. .+|..+++++ +|+.|++..+....
T Consensus 117 ~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~------- 188 (313)
T 1ogq_A 117 IPDFLSQIKTLVTLDFSYNA-LSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTG------- 188 (313)
T ss_dssp CCGGGGGCTTCCEEECCSSE-EESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEE-------
T ss_pred CCHHHhCCCCCCEEeCCCCc-cCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeec-------
Confidence 89999999999999999998 65 78989999999999999888876 7888887776 77777654332111
Q ss_pred cChhccccccccccceEEeccCCCCChhHHHHhccCCCCCCCeEEEEEecccccccCCcccccccchhhHHHHhhcCCCC
Q 037953 245 CKLEGLRHLNHLRGSLKVRGLGNVADVDEVKNAHLEKKKNLVRLILRFKDIDKAVKRWPEAISNENAAKHEAICEALWPP 324 (625)
Q Consensus 245 ~~l~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 324 (625)
..+..+..++ |+.|++++|.++ ...+..+..+
T Consensus 189 -----------------------------~~~~~~~~l~-L~~L~Ls~N~l~------------------~~~~~~~~~l 220 (313)
T 1ogq_A 189 -----------------------------KIPPTFANLN-LAFVDLSRNMLE------------------GDASVLFGSD 220 (313)
T ss_dssp -----------------------------ECCGGGGGCC-CSEEECCSSEEE------------------ECCGGGCCTT
T ss_pred -----------------------------cCChHHhCCc-ccEEECcCCccc------------------CcCCHHHhcC
Confidence 0111233333 777777776422 2344566777
Q ss_pred CCCcEEEEeccCCCcccCCchhhcccccccEEEEeCCCCCCCCC-CCCCCCCcceeeccccccceeeCccCCCCCCCCCC
Q 037953 325 PNLESLEIAGFRGRKMMLSTNWMASLNMLKKLRLLNCPTCEIMP-PLGQLPSLEILLIKDMTSVERVGDESLGIANGDHG 403 (625)
Q Consensus 325 ~~L~~L~L~~~~~~~~~~~p~~l~~l~~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~ 403 (625)
++|+.|++++|..... +..+..+++|++|++++|...+.+| .++.+++|+.|++++|...+.+|.
T Consensus 221 ~~L~~L~L~~N~l~~~---~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~----------- 286 (313)
T 1ogq_A 221 KNTQKIHLAKNSLAFD---LGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ----------- 286 (313)
T ss_dssp SCCSEEECCSSEECCB---GGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-----------
T ss_pred CCCCEEECCCCceeee---cCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCC-----------
Confidence 7888888877766544 4446677778888887765544555 367777777777777764445543
Q ss_pred CCCCCCCCCCCCCCCCeeeccCccc
Q 037953 404 APSSSSVNNIAFPKLKELEFSGLQE 428 (625)
Q Consensus 404 ~~~~~~~~~~~l~~L~~L~L~~~~~ 428 (625)
...+++|+.|++++++.
T Consensus 287 --------~~~l~~L~~l~l~~N~~ 303 (313)
T 1ogq_A 287 --------GGNLQRFDVSAYANNKC 303 (313)
T ss_dssp --------STTGGGSCGGGTCSSSE
T ss_pred --------CccccccChHHhcCCCC
Confidence 34556666666666543
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
Probab=99.82 E-value=8.1e-23 Score=219.33 Aligned_cols=355 Identities=17% Similarity=0.123 Sum_probs=238.4
Q ss_pred CCceEEEEEEcCCCCcch--hhhccCCcceEEEeecccCCcc--ccCchhhHHHhcCCceeEEEeecCCCccccccchhh
Q 037953 71 PEKLRHLMLVLGYEAPSL--VSIFNAIKLRSLILFYWIPNLD--AMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNE 146 (625)
Q Consensus 71 ~~~lr~L~l~~~~~~~~~--~~~~~l~~Lr~L~L~~~~~~~~--~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~ 146 (625)
++++++|+++++.+...+ ..+..+++|++|++++|..... ..++ ..+..+++|++|+|+ +|.+..
T Consensus 2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~---~~l~~~~~L~~L~Ls--------~n~l~~ 70 (461)
T 1z7x_W 2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDIS---SALRVNPALAELNLR--------SNELGD 70 (461)
T ss_dssp CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHH---HHHHTCTTCCEEECT--------TCCCHH
T ss_pred CccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHH---HHHHhCCCcCEEeCC--------CCcCCh
Confidence 568999999999885443 3378899999999999862211 1445 778899999999999 887654
Q ss_pred h-hccc-cccc----ccceecC--CCCC-----CCchhhcCCCCCceEeecCCCCCCcc-ccccc-----cccccceEEe
Q 037953 147 I-LNGV-EKLI----HLRYLKL--NLVG-----DLPEKCCELLNLQTLELENSSHFKRF-PQGIG-----KLINLRHLIF 207 (625)
Q Consensus 147 l-p~~~-~~L~----~L~~L~L--~~l~-----~lP~~i~~L~~L~~L~L~~~~~l~~l-p~~l~-----~L~~L~~L~l 207 (625)
. +..+ ..+. +|++|+| |.+. .+|..+.++++|++|++++|. ++.. +..+. ..++|++|++
T Consensus 71 ~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L 149 (461)
T 1z7x_W 71 VGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQL 149 (461)
T ss_dssp HHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEEC
T ss_pred HHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEEC
Confidence 2 3333 3355 7999999 4465 568889999999999999998 6532 22222 3568999999
Q ss_pred cCccccc-----ccccCCCccccccCCceEecCCCCcCCCcccChhccc-----cccccccceEEeccCCCCChhHHHHh
Q 037953 208 TEDLLEY-----MPKGIEKLTSLRTLSEFVVASGGGRYGSEACKLEGLR-----HLNHLRGSLKVRGLGNVADVDEVKNA 277 (625)
Q Consensus 208 ~~~~l~~-----lp~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~l~-----~L~~L~~~L~l~~~~~~~~~~~~~~~ 277 (625)
++|.++. ++..+..+++|++|++..+.... ..+..+. ..++|+ .|.++++.-.......++.
T Consensus 150 ~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~-------~~~~~l~~~l~~~~~~L~-~L~L~~n~l~~~~~~~l~~ 221 (461)
T 1z7x_W 150 EYCSLSAASCEPLASVLRAKPDFKELTVSNNDINE-------AGVRVLCQGLKDSPCQLE-ALKLESCGVTSDNCRDLCG 221 (461)
T ss_dssp TTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHH-------HHHHHHHHHHHHSCCCCC-EEECTTSCCBTTHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcch-------HHHHHHHHHHhcCCCCce-EEEccCCCCcHHHHHHHHH
Confidence 7777764 34556677888888876554322 1122221 234666 7888776432222233556
Q ss_pred ccCCCCCCCeEEEEEecccccccCCcccccccchhhHHHHhhc-CCCCCCCcEEEEeccCCCc-----ccCCchhhcccc
Q 037953 278 HLEKKKNLVRLILRFKDIDKAVKRWPEAISNENAAKHEAICEA-LWPPPNLESLEIAGFRGRK-----MMLSTNWMASLN 351 (625)
Q Consensus 278 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~L~~L~L~~~~~~~-----~~~~p~~l~~l~ 351 (625)
.+..+++|++|++++|.++. .....+... ...+++|+.|++++|.... + +..+..++
T Consensus 222 ~l~~~~~L~~L~Ls~n~l~~--------------~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l---~~~l~~~~ 284 (461)
T 1z7x_W 222 IVASKASLRELALGSNKLGD--------------VGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDL---CRVLRAKE 284 (461)
T ss_dssp HHHHCTTCCEEECCSSBCHH--------------HHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHH---HHHHHHCT
T ss_pred HHHhCCCccEEeccCCcCCh--------------HHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHH---HHHHhhCC
Confidence 67788999999999885320 011222232 3468899999999997765 4 66777899
Q ss_pred cccEEEEeCCCCCCC-----CCC--CCCCCCcceeeccccccceeeCccCCCCCCCCCCCCCCCCCCCCCCCCCCeeecc
Q 037953 352 MLKKLRLLNCPTCEI-----MPP--LGQLPSLEILLIKDMTSVERVGDESLGIANGDHGAPSSSSVNNIAFPKLKELEFS 424 (625)
Q Consensus 352 ~L~~L~L~~c~~l~~-----l~~--l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~ 424 (625)
+|++|++++|. +++ +.. ....++|+.|++++|. ++......+... +..+++|++|+++
T Consensus 285 ~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~-------------l~~~~~L~~L~Ls 349 (461)
T 1z7x_W 285 SLKELSLAGNE-LGDEGARLLCETLLEPGCQLESLWVKSCS-FTAACCSHFSSV-------------LAQNRFLLELQIS 349 (461)
T ss_dssp TCCEEECTTCC-CHHHHHHHHHHHHTSTTCCCCEEECTTSC-CBGGGHHHHHHH-------------HHHCSSCCEEECC
T ss_pred CcceEECCCCC-CchHHHHHHHHHhccCCccceeeEcCCCC-CchHHHHHHHHH-------------HhhCCCccEEEcc
Confidence 99999999874 321 111 1234799999999987 332211000000 4567899999999
Q ss_pred CcccccccccCC--CCcc-cCCCccEEEEecCCCCC-----cCCcCCCCCCCCCEEEEecCcc
Q 037953 425 GLQEWEDWDFRK--EDIT-IMPQINSLSIYGCHKLK-----SLPDQLLQSSTLKTLRINRCRV 479 (625)
Q Consensus 425 ~~~~l~~~~~~~--~~~~-~l~~L~~L~l~~c~~l~-----~lp~~~~~l~~L~~L~l~~c~~ 479 (625)
++. +....... ..+. ..++|++|++++| .++ .+|..+..+++|++|++++|+.
T Consensus 350 ~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i 410 (461)
T 1z7x_W 350 NNR-LEDAGVRELCQGLGQPGSVLRVLWLADC-DVSDSSCSSLAATLLANHSLRELDLSNNCL 410 (461)
T ss_dssp SSB-CHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCCCCCEEECCSSSC
T ss_pred CCc-cccccHHHHHHHHcCCCCceEEEECCCC-CCChhhHHHHHHHHHhCCCccEEECCCCCC
Confidence 873 33321110 0000 2679999999997 565 5777777789999999999964
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=99.82 E-value=2.9e-21 Score=214.10 Aligned_cols=377 Identities=13% Similarity=0.013 Sum_probs=242.2
Q ss_pred CCCceEEEEEEcCCCC-cchhhhcc-CCc-ceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchh-
Q 037953 70 CPEKLRHLMLVLGYEA-PSLVSIFN-AIK-LRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTN- 145 (625)
Q Consensus 70 ~~~~lr~L~l~~~~~~-~~~~~~~~-l~~-Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~- 145 (625)
..++++.|+++++.+. ..+..+.. +++ |++|++++|.......++ ....++++|++|+|+ +|.+.
T Consensus 110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~---~~~~~~~~L~~L~L~--------~~~~~~ 178 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLL---SIVTHCRKIKTLLME--------ESSFSE 178 (592)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHH---HHHHHCTTCSEEECT--------TCEEEC
T ss_pred hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHH---HHHhhCCCCCEEECc--------cccccC
Confidence 3578999999999773 23444544 445 999999998632233344 556799999999999 55432
Q ss_pred ----hhhcccccccccceecC-CC-CC-----CCchhhcCCCCCceEeecCCCCCCccccccccccccceEEec-Cccc-
Q 037953 146 ----EILNGVEKLIHLRYLKL-NL-VG-----DLPEKCCELLNLQTLELENSSHFKRFPQGIGKLINLRHLIFT-EDLL- 212 (625)
Q Consensus 146 ----~lp~~~~~L~~L~~L~L-~~-l~-----~lP~~i~~L~~L~~L~L~~~~~l~~lp~~l~~L~~L~~L~l~-~~~l- 212 (625)
.++..+..+++|++|++ ++ +. .++..+.++++|++|++++|. +..+|..+.++++|++|+++ .+..
T Consensus 179 ~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-~~~l~~~~~~~~~L~~L~l~~~~~~~ 257 (592)
T 3ogk_B 179 KDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFE-ILELVGFFKAAANLEEFCGGSLNEDI 257 (592)
T ss_dssp CCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCB-GGGGHHHHHHCTTCCEEEECBCCCCT
T ss_pred cchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCcc-HHHHHHHHhhhhHHHhhccccccccc
Confidence 24445668899999999 44 64 445567789999999999998 88899889999999999995 3322
Q ss_pred --ccccccCCCccccccCCceEecCCCCcCCCcccChhccccccccccceEEeccCCCCChhHHHHhccCCCCCCCeEEE
Q 037953 213 --EYMPKGIEKLTSLRTLSEFVVASGGGRYGSEACKLEGLRHLNHLRGSLKVRGLGNVADVDEVKNAHLEKKKNLVRLIL 290 (625)
Q Consensus 213 --~~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l 290 (625)
...+..+..+++|+.|.+..+.. ......+..+++|+ .|.++++. +.. ......+..+++|+.|++
T Consensus 258 ~~~~~~~~l~~~~~L~~L~l~~~~~--------~~l~~~~~~~~~L~-~L~Ls~~~-l~~--~~~~~~~~~~~~L~~L~L 325 (592)
T 3ogk_B 258 GMPEKYMNLVFPRKLCRLGLSYMGP--------NEMPILFPFAAQIR-KLDLLYAL-LET--EDHCTLIQKCPNLEVLET 325 (592)
T ss_dssp TCTTSSSCCCCCTTCCEEEETTCCT--------TTGGGGGGGGGGCC-EEEETTCC-CCH--HHHHHHHTTCTTCCEEEE
T ss_pred chHHHHHHhhccccccccCccccch--------hHHHHHHhhcCCCc-EEecCCCc-CCH--HHHHHHHHhCcCCCEEec
Confidence 23334566677777765543221 12223345566677 88888765 222 233345788999999999
Q ss_pred EEecccccccCCcccccccchhhHHHHhhcCCCCCCCcEEEEec----------cCCCcccCCchhhcccccccEEEEeC
Q 037953 291 RFKDIDKAVKRWPEAISNENAAKHEAICEALWPPPNLESLEIAG----------FRGRKMMLSTNWMASLNMLKKLRLLN 360 (625)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~----------~~~~~~~~~p~~l~~l~~L~~L~L~~ 360 (625)
+.+- ....+......+++|++|++++ |........+.....+++|++|+++.
T Consensus 326 ~~~~------------------~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~ 387 (592)
T 3ogk_B 326 RNVI------------------GDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYV 387 (592)
T ss_dssp EGGG------------------HHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEE
T ss_pred cCcc------------------CHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeec
Confidence 9331 2234444445678999999994 44433100023344689999999954
Q ss_pred CCCCCC--CCCCCC-CCCcceeeccc---cccceeeCccCCCCCCCCCCCCCCCCCCCCCCCCCCeeeccCccc-ccccc
Q 037953 361 CPTCEI--MPPLGQ-LPSLEILLIKD---MTSVERVGDESLGIANGDHGAPSSSSVNNIAFPKLKELEFSGLQE-WEDWD 433 (625)
Q Consensus 361 c~~l~~--l~~l~~-l~~L~~L~L~~---~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~-l~~~~ 433 (625)
+.++. +..++. +++|+.|++++ |+.++..|.+. ++. .....+++|+.|+++.|.+ +....
T Consensus 388 -~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~-~~~-----------~~~~~~~~L~~L~L~~~~~~l~~~~ 454 (592)
T 3ogk_B 388 -SDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDN-GVR-----------SLLIGCKKLRRFAFYLRQGGLTDLG 454 (592)
T ss_dssp -SCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHH-HHH-----------HHHHHCTTCCEEEEECCGGGCCHHH
T ss_pred -CCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHH-HHH-----------HHHHhCCCCCEEEEecCCCCccHHH
Confidence 44442 123333 88999999984 44555433210 000 0034588999999987653 22111
Q ss_pred cCCCCcccCCCccEEEEecCCCCCc--CCcCCCCCCCCCEEEEecCcchhhc-ccccccccCCCCceEEecCCC
Q 037953 434 FRKEDITIMPQINSLSIYGCHKLKS--LPDQLLQSSTLKTLRINRCRVLEEH-FKKDRSKISHIPDIQIYERGP 504 (625)
Q Consensus 434 ~~~~~~~~l~~L~~L~l~~c~~l~~--lp~~~~~l~~L~~L~l~~c~~L~~~-~~~~~~~l~~l~~l~~~~~~~ 504 (625)
.... ...+++|+.|++++|. ++. ++..+..+++|++|++++|+ +++. ....+..+++++.+.+.++..
T Consensus 455 ~~~~-~~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~i 525 (592)
T 3ogk_B 455 LSYI-GQYSPNVRWMLLGYVG-ESDEGLMEFSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYRA 525 (592)
T ss_dssp HHHH-HHSCTTCCEEEECSCC-SSHHHHHHHHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCBC
T ss_pred HHHH-HHhCccceEeeccCCC-CCHHHHHHHHhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCcC
Confidence 1100 1147889999999865 543 45555668899999999998 4332 112234567788888877653
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.82 E-value=6.3e-20 Score=189.56 Aligned_cols=262 Identities=15% Similarity=0.114 Sum_probs=193.4
Q ss_pred EEEEcCCCCcchhhhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhh-hccccccc
Q 037953 77 LMLVLGYEAPSLVSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEI-LNGVEKLI 155 (625)
Q Consensus 77 L~l~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~l-p~~~~~L~ 155 (625)
.+.+++.+..+|..+. ++|++|++++|. +....+ ..|.++++|++|+++ +|.+..+ |..|++++
T Consensus 36 c~~~~~~l~~iP~~~~--~~L~~L~l~~n~--i~~~~~---~~~~~l~~L~~L~L~--------~n~l~~~~~~~~~~l~ 100 (353)
T 2z80_A 36 CKGSSGSLNSIPSGLT--EAVKSLDLSNNR--ITYISN---SDLQRCVNLQALVLT--------SNGINTIEEDSFSSLG 100 (353)
T ss_dssp EECCSTTCSSCCTTCC--TTCCEEECTTSC--CCEECT---TTTTTCTTCCEEECT--------TSCCCEECTTTTTTCT
T ss_pred eeCCCCCccccccccc--ccCcEEECCCCc--CcccCH---HHhccCCCCCEEECC--------CCccCccCHhhcCCCC
Confidence 6667788888887664 589999999975 444444 578999999999999 8887776 45699999
Q ss_pred ccceecC-CC-CCCCchh-hcCCCCCceEeecCCCCCCcccc--ccccccccceEEecCc-cccccc-ccCCCccccccC
Q 037953 156 HLRYLKL-NL-VGDLPEK-CCELLNLQTLELENSSHFKRFPQ--GIGKLINLRHLIFTED-LLEYMP-KGIEKLTSLRTL 228 (625)
Q Consensus 156 ~L~~L~L-~~-l~~lP~~-i~~L~~L~~L~L~~~~~l~~lp~--~l~~L~~L~~L~l~~~-~l~~lp-~~i~~L~~L~~L 228 (625)
+|++|++ .+ +..+|.. ++++++|++|++++|. ++.+|. .+.++++|++|+++.| .++.++ ..++++++|++|
T Consensus 101 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L 179 (353)
T 2z80_A 101 SLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNP-YKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEEL 179 (353)
T ss_dssp TCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEE
T ss_pred CCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCC-CcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEE
Confidence 9999999 44 8888876 8899999999999998 888887 5889999999999555 577764 468889999999
Q ss_pred CceEecCCCCcCCCcccChhccccccccccceEEeccCCCCChhHHHHhccCCCCCCCeEEEEEecccccccCCcccccc
Q 037953 229 SEFVVASGGGRYGSEACKLEGLRHLNHLRGSLKVRGLGNVADVDEVKNAHLEKKKNLVRLILRFKDIDKAVKRWPEAISN 308 (625)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 308 (625)
++..+.... .....+.++++|+ .|.+.+..- ... ....+..+++|+.|++++|.+++..
T Consensus 180 ~l~~n~l~~-------~~~~~l~~l~~L~-~L~l~~n~l-~~~---~~~~~~~~~~L~~L~L~~n~l~~~~--------- 238 (353)
T 2z80_A 180 EIDASDLQS-------YEPKSLKSIQNVS-HLILHMKQH-ILL---LEIFVDVTSSVECLELRDTDLDTFH--------- 238 (353)
T ss_dssp EEEETTCCE-------ECTTTTTTCSEEE-EEEEECSCS-TTH---HHHHHHHTTTEEEEEEESCBCTTCC---------
T ss_pred ECCCCCcCc-------cCHHHHhccccCC-eecCCCCcc-ccc---hhhhhhhcccccEEECCCCcccccc---------
Confidence 887765443 2233455556666 777776432 222 2223445789999999988643110
Q ss_pred cchhhHHHHhhcCCCCCCCcEEEEeccCCCc-----ccCCchhhcccccccEEEEeCCCCCCCCCC--CCCCCCcceeec
Q 037953 309 ENAAKHEAICEALWPPPNLESLEIAGFRGRK-----MMLSTNWMASLNMLKKLRLLNCPTCEIMPP--LGQLPSLEILLI 381 (625)
Q Consensus 309 ~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~-----~~~~p~~l~~l~~L~~L~L~~c~~l~~l~~--l~~l~~L~~L~L 381 (625)
............++.+++.++.... + |.++..+++|+.|++++| .++.+|. ++.+++|++|++
T Consensus 239 ------~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l---~~~l~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L 308 (353)
T 2z80_A 239 ------FSELSTGETNSLIKKFTFRNVKITDESLFQV---MKLLNQISGLLELEFSRN-QLKSVPDGIFDRLTSLQKIWL 308 (353)
T ss_dssp ------CC------CCCCCCEEEEESCBCCHHHHHHH---HHHHHTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEEC
T ss_pred ------ccccccccccchhhccccccccccCcchhhh---HHHHhcccCCCEEECCCC-CCCccCHHHHhcCCCCCEEEe
Confidence 0001122345678888888765443 4 778889999999999996 4557774 588999999999
Q ss_pred cccc
Q 037953 382 KDMT 385 (625)
Q Consensus 382 ~~~~ 385 (625)
++|+
T Consensus 309 ~~N~ 312 (353)
T 2z80_A 309 HTNP 312 (353)
T ss_dssp CSSC
T ss_pred eCCC
Confidence 9987
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=99.81 E-value=1e-20 Score=209.72 Aligned_cols=397 Identities=14% Similarity=0.076 Sum_probs=250.5
Q ss_pred CCCceEEEEEEcCCC----Ccc------------hhhhccCCcceEEEeecccCCccccCchhhHHHhc-CC-ceeEEEe
Q 037953 70 CPEKLRHLMLVLGYE----APS------------LVSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQ-LT-CLRALRI 131 (625)
Q Consensus 70 ~~~~lr~L~l~~~~~----~~~------------~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~-l~-~Lr~L~L 131 (625)
..+++++|++.++.. ..+ +.....+++|++|++++|. +....+ ..+.. ++ +|++|+|
T Consensus 71 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~--i~~~~~---~~l~~~~~~~L~~L~L 145 (592)
T 3ogk_B 71 RFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMI--VSDLDL---DRLAKARADDLETLKL 145 (592)
T ss_dssp HCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCB--CCHHHH---HHHHHHHGGGCCEEEE
T ss_pred hCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccE--ecHHHH---HHHHHhccccCcEEEC
Confidence 466799999987432 111 2222378999999999974 333333 45555 44 4999999
Q ss_pred ecCCCccccccchhhhhcccccccccceecC--CCCC-C----CchhhcCCCCCceEeecCCCCCC-----ccccccccc
Q 037953 132 EGTDNWELEEDQTNEILNGVEKLIHLRYLKL--NLVG-D----LPEKCCELLNLQTLELENSSHFK-----RFPQGIGKL 199 (625)
Q Consensus 132 s~c~~~~~~~~~l~~lp~~~~~L~~L~~L~L--~~l~-~----lP~~i~~L~~L~~L~L~~~~~l~-----~lp~~l~~L 199 (625)
++|. +.....++....++++|++|+| |.+. . ++....++++|++|++++|. +. .++..+.++
T Consensus 146 ~~~~-----~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~-~~~~~~~~l~~~~~~~ 219 (592)
T 3ogk_B 146 DKCS-----GFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTE-FAKISPKDLETIARNC 219 (592)
T ss_dssp ESCE-----EEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCC-CSSCCHHHHHHHHHHC
T ss_pred cCCC-----CcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccC-CCccCHHHHHHHHhhC
Confidence 9443 1112345545568899999999 4432 2 44556789999999999998 64 455557789
Q ss_pred cccceEEecCcccccccccCCCccccccCCceEecCCCCcCCCcccChhccccccccccceEEeccCCCCChhHHHHhcc
Q 037953 200 INLRHLIFTEDLLEYMPKGIEKLTSLRTLSEFVVASGGGRYGSEACKLEGLRHLNHLRGSLKVRGLGNVADVDEVKNAHL 279 (625)
Q Consensus 200 ~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l 279 (625)
++|++|+++.+.+..+|..++.+++|+.|.+....... ........+..+++|+ .+.+.... ....+..+
T Consensus 220 ~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~----~~~~~~~~l~~~~~L~-~L~l~~~~-----~~~l~~~~ 289 (592)
T 3ogk_B 220 RSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDI----GMPEKYMNLVFPRKLC-RLGLSYMG-----PNEMPILF 289 (592)
T ss_dssp TTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCT----TCTTSSSCCCCCTTCC-EEEETTCC-----TTTGGGGG
T ss_pred CCCcEEeccCccHHHHHHHHhhhhHHHhhccccccccc----chHHHHHHhhcccccc-ccCccccc-----hhHHHHHH
Confidence 99999999778888888888888999988875432221 0122334455566666 67665531 12345567
Q ss_pred CCCCCCCeEEEEEecccccccCCcccccccchhhHHHHhhcCCCCCCCcEEEEeccCCCcccCCchhhcccccccEEEEe
Q 037953 280 EKKKNLVRLILRFKDIDKAVKRWPEAISNENAAKHEAICEALWPPPNLESLEIAGFRGRKMMLSTNWMASLNMLKKLRLL 359 (625)
Q Consensus 280 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~p~~l~~l~~L~~L~L~ 359 (625)
..+++|++|++++|.++ ...+...+..+++|+.|+++++...... +.....+++|++|+++
T Consensus 290 ~~~~~L~~L~Ls~~~l~-----------------~~~~~~~~~~~~~L~~L~L~~~~~~~~l--~~~~~~~~~L~~L~L~ 350 (592)
T 3ogk_B 290 PFAAQIRKLDLLYALLE-----------------TEDHCTLIQKCPNLEVLETRNVIGDRGL--EVLAQYCKQLKRLRIE 350 (592)
T ss_dssp GGGGGCCEEEETTCCCC-----------------HHHHHHHHTTCTTCCEEEEEGGGHHHHH--HHHHHHCTTCCEEEEE
T ss_pred hhcCCCcEEecCCCcCC-----------------HHHHHHHHHhCcCCCEEeccCccCHHHH--HHHHHhCCCCCEEEee
Confidence 77899999999977421 2334455778999999999854332210 4455688999999999
Q ss_pred C----------CCCCCC--CCC-CCCCCCcceeeccccccceeeCccCCCCCCCCCCCCCCCCCCCCCCCCCCeeeccC-
Q 037953 360 N----------CPTCEI--MPP-LGQLPSLEILLIKDMTSVERVGDESLGIANGDHGAPSSSSVNNIAFPKLKELEFSG- 425 (625)
Q Consensus 360 ~----------c~~l~~--l~~-l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~- 425 (625)
+ |+.++. ++. ...+++|++|+++ |+.++...... + ...+++|+.|+++.
T Consensus 351 ~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~-~~~l~~~~~~~--l--------------~~~~~~L~~L~l~~~ 413 (592)
T 3ogk_B 351 RGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVY-VSDITNESLES--I--------------GTYLKNLCDFRLVLL 413 (592)
T ss_dssp CCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEE-ESCCCHHHHHH--H--------------HHHCCSCCEEEEEEC
T ss_pred cCccccccccccCccCHHHHHHHHhhCccCeEEEee-cCCccHHHHHH--H--------------HhhCCCCcEEEEeec
Confidence 5 666653 222 3458999999994 44343221110 0 23488999999984
Q ss_pred --cccccccccCCC---CcccCCCccEEEEecCCC-CCc--CCcCCCCCCCCCEEEEecCcchhhcccccccccCCCCce
Q 037953 426 --LQEWEDWDFRKE---DITIMPQINSLSIYGCHK-LKS--LPDQLLQSSTLKTLRINRCRVLEEHFKKDRSKISHIPDI 497 (625)
Q Consensus 426 --~~~l~~~~~~~~---~~~~l~~L~~L~l~~c~~-l~~--lp~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~l~~l~~l 497 (625)
+..++..+...+ .+..+++|++|++++|.. ++. ++.....+++|++|++++|..-..........+.++..+
T Consensus 414 ~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L 493 (592)
T 3ogk_B 414 DREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKL 493 (592)
T ss_dssp SCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEE
T ss_pred CCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCee
Confidence 445554321100 023589999999988764 322 111122378999999999873221111223456788888
Q ss_pred EEecCCCCccchhhhhccCcccccccc
Q 037953 498 QIYERGPGFFTLMARLISDCLSMMNMN 524 (625)
Q Consensus 498 ~~~~~~~~~~~l~~~~i~~c~~L~~l~ 524 (625)
.+.++...-.. .......|++|+.+.
T Consensus 494 ~l~~n~l~~~~-~~~~~~~l~~L~~L~ 519 (592)
T 3ogk_B 494 EMRGCCFSERA-IAAAVTKLPSLRYLW 519 (592)
T ss_dssp EEESCCCBHHH-HHHHHHHCSSCCEEE
T ss_pred eccCCCCcHHH-HHHHHHhcCccCeeE
Confidence 88887632111 122234566666543
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.81 E-value=4.3e-19 Score=195.21 Aligned_cols=259 Identities=19% Similarity=0.176 Sum_probs=149.5
Q ss_pred ceEEEEEEcCCCCcchhhhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhhhcccc
Q 037953 73 KLRHLMLVLGYEAPSLVSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEILNGVE 152 (625)
Q Consensus 73 ~lr~L~l~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp~~~~ 152 (625)
+++.|+++++.+..+|..+. ++|++|++++|. ...+| . .+++|++|+|+ +|.+..+|.
T Consensus 41 ~l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N~---l~~lp---~---~l~~L~~L~Ls--------~N~l~~lp~--- 98 (622)
T 3g06_A 41 GNAVLNVGESGLTTLPDCLP--AHITTLVIPDNN---LTSLP---A---LPPELRTLEVS--------GNQLTSLPV--- 98 (622)
T ss_dssp CCCEEECCSSCCSCCCSCCC--TTCSEEEECSCC---CSCCC---C---CCTTCCEEEEC--------SCCCSCCCC---
T ss_pred CCcEEEecCCCcCccChhhC--CCCcEEEecCCC---CCCCC---C---cCCCCCEEEcC--------CCcCCcCCC---
Confidence 35666666666666665544 566666666654 23444 2 45666666666 666656654
Q ss_pred cccccceecC-CC-CCCCchhhcCCCCCceEeecCCCCCCccccccccccccceEEecCcccccccccCCCccccccCCc
Q 037953 153 KLIHLRYLKL-NL-VGDLPEKCCELLNLQTLELENSSHFKRFPQGIGKLINLRHLIFTEDLLEYMPKGIEKLTSLRTLSE 230 (625)
Q Consensus 153 ~L~~L~~L~L-~~-l~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~l~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~~ 230 (625)
.+++|++|++ ++ +..+|. .+.+|++|++++|. ++.+|.. +++|++|++++|.++.+|..+ .+|+
T Consensus 99 ~l~~L~~L~Ls~N~l~~l~~---~l~~L~~L~L~~N~-l~~lp~~---l~~L~~L~Ls~N~l~~l~~~~---~~L~---- 164 (622)
T 3g06_A 99 LPPGLLELSIFSNPLTHLPA---LPSGLCKLWIFGNQ-LTSLPVL---PPGLQELSVSDNQLASLPALP---SELC---- 164 (622)
T ss_dssp CCTTCCEEEECSCCCCCCCC---CCTTCCEEECCSSC-CSCCCCC---CTTCCEEECCSSCCSCCCCCC---TTCC----
T ss_pred CCCCCCEEECcCCcCCCCCC---CCCCcCEEECCCCC-CCcCCCC---CCCCCEEECcCCcCCCcCCcc---CCCC----
Confidence 4566666666 33 666654 45566666666665 5666553 356666666555555554322 2222
Q ss_pred eEecCCCCcCCCcccChhccccccccccceEEeccCCCCChhHHHHhccCCCCCCCeEEEEEecccccccCCcccccccc
Q 037953 231 FVVASGGGRYGSEACKLEGLRHLNHLRGSLKVRGLGNVADVDEVKNAHLEKKKNLVRLILRFKDIDKAVKRWPEAISNEN 310 (625)
Q Consensus 231 ~~~~~~~~~~~~~~~~l~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 310 (625)
.|++++|.++
T Consensus 165 --------------------------------------------------------~L~L~~N~l~-------------- 174 (622)
T 3g06_A 165 --------------------------------------------------------KLWAYNNQLT-------------- 174 (622)
T ss_dssp --------------------------------------------------------EEECCSSCCS--------------
T ss_pred --------------------------------------------------------EEECCCCCCC--------------
Confidence 2222222110
Q ss_pred hhhHHHHhhcCCCCCCCcEEEEeccCCCcccCCchhhcccccccEEEEeCCCCCCCCCCCCCCCCcceeeccccccceee
Q 037953 311 AAKHEAICEALWPPPNLESLEIAGFRGRKMMLSTNWMASLNMLKKLRLLNCPTCEIMPPLGQLPSLEILLIKDMTSVERV 390 (625)
Q Consensus 311 ~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~p~~l~~l~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~~~~l~~l 390 (625)
.++ ..+++|+.|++++|....+ |.. +++|+.|++++| .+..+|. .+++|+.|++++|. ++.+
T Consensus 175 -----~l~---~~~~~L~~L~Ls~N~l~~l---~~~---~~~L~~L~L~~N-~l~~l~~--~~~~L~~L~Ls~N~-L~~l 236 (622)
T 3g06_A 175 -----SLP---MLPSGLQELSVSDNQLASL---PTL---PSELYKLWAYNN-RLTSLPA--LPSGLKELIVSGNR-LTSL 236 (622)
T ss_dssp -----CCC---CCCTTCCEEECCSSCCSCC---CCC---CTTCCEEECCSS-CCSSCCC--CCTTCCEEECCSSC-CSCC
T ss_pred -----CCc---ccCCCCcEEECCCCCCCCC---CCc---cchhhEEECcCC-cccccCC--CCCCCCEEEccCCc-cCcC
Confidence 000 1234555555555554444 432 356666666664 3444543 24667777777654 4444
Q ss_pred CccCCCCCCCCCCCCCCCCCCCCCCCCCCeeeccCcccccccccCCCCcccCCCccEEEEecCCCCCcCCcCCCCCCCCC
Q 037953 391 GDESLGIANGDHGAPSSSSVNNIAFPKLKELEFSGLQEWEDWDFRKEDITIMPQINSLSIYGCHKLKSLPDQLLQSSTLK 470 (625)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~ 470 (625)
| ..+++|+.|+++++ .+..++. .+++|+.|++++| .++.+|..+.++++|+
T Consensus 237 p---------------------~~l~~L~~L~Ls~N-~L~~lp~------~~~~L~~L~Ls~N-~L~~lp~~l~~l~~L~ 287 (622)
T 3g06_A 237 P---------------------VLPSELKELMVSGN-RLTSLPM------LPSGLLSLSVYRN-QLTRLPESLIHLSSET 287 (622)
T ss_dssp C---------------------CCCTTCCEEECCSS-CCSCCCC------CCTTCCEEECCSS-CCCSCCGGGGGSCTTC
T ss_pred C---------------------CCCCcCcEEECCCC-CCCcCCc------ccccCcEEeCCCC-CCCcCCHHHhhccccC
Confidence 3 23466777777765 3444432 3688999999985 6778998888899999
Q ss_pred EEEEecCcchhhcc
Q 037953 471 TLRINRCRVLEEHF 484 (625)
Q Consensus 471 ~L~l~~c~~L~~~~ 484 (625)
.|++++|+.-...+
T Consensus 288 ~L~L~~N~l~~~~~ 301 (622)
T 3g06_A 288 TVNLEGNPLSERTL 301 (622)
T ss_dssp EEECCSCCCCHHHH
T ss_pred EEEecCCCCCCcCH
Confidence 99999998655444
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.80 E-value=5.4e-20 Score=190.07 Aligned_cols=256 Identities=17% Similarity=0.148 Sum_probs=194.9
Q ss_pred CCCceEEEEEEcCCCCcchh-hhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhhh
Q 037953 70 CPEKLRHLMLVLGYEAPSLV-SIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEIL 148 (625)
Q Consensus 70 ~~~~lr~L~l~~~~~~~~~~-~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp 148 (625)
.++++++|++++|.+..++. .+.++++|++|++++|. +....| ..|+++++|++|+++ +|.+..+|
T Consensus 50 ~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~--l~~~~~---~~~~~l~~L~~L~Ls--------~n~l~~~~ 116 (353)
T 2z80_A 50 LTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNG--INTIEE---DSFSSLGSLEHLDLS--------YNYLSNLS 116 (353)
T ss_dssp CCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC--CCEECT---TTTTTCTTCCEEECC--------SSCCSSCC
T ss_pred ccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCc--cCccCH---hhcCCCCCCCEEECC--------CCcCCcCC
Confidence 45689999999999988876 78999999999999975 455666 789999999999999 99988887
Q ss_pred cc-cccccccceecC-CC-CCCCch--hhcCCCCCceEeecCCCCCCccc-cccccccccceEEecCcccccc-cccCCC
Q 037953 149 NG-VEKLIHLRYLKL-NL-VGDLPE--KCCELLNLQTLELENSSHFKRFP-QGIGKLINLRHLIFTEDLLEYM-PKGIEK 221 (625)
Q Consensus 149 ~~-~~~L~~L~~L~L-~~-l~~lP~--~i~~L~~L~~L~L~~~~~l~~lp-~~l~~L~~L~~L~l~~~~l~~l-p~~i~~ 221 (625)
.. ++++++|++|++ .+ +..+|. .+.++++|++|++++|..++.++ ..++++++|++|+++.|.+..+ |..+++
T Consensus 117 ~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~ 196 (353)
T 2z80_A 117 SSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKS 196 (353)
T ss_dssp HHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTT
T ss_pred HhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhc
Confidence 66 899999999999 44 889987 68999999999999996577775 5689999999999977777766 677999
Q ss_pred ccccccCCceEecCCCCcCCCcccChhccccccccccceEEeccCCCCChhHHHHhccCCCCCCCeEEEEEecccccccC
Q 037953 222 LTSLRTLSEFVVASGGGRYGSEACKLEGLRHLNHLRGSLKVRGLGNVADVDEVKNAHLEKKKNLVRLILRFKDIDKAVKR 301 (625)
Q Consensus 222 L~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 301 (625)
+++|++|++..+.... .+ ...+..+++|+ .|.+++..- ................++.++++.+.++
T Consensus 197 l~~L~~L~l~~n~l~~-----~~--~~~~~~~~~L~-~L~L~~n~l-~~~~~~~l~~~~~~~~l~~l~L~~~~l~----- 262 (353)
T 2z80_A 197 IQNVSHLILHMKQHIL-----LL--EIFVDVTSSVE-CLELRDTDL-DTFHFSELSTGETNSLIKKFTFRNVKIT----- 262 (353)
T ss_dssp CSEEEEEEEECSCSTT-----HH--HHHHHHTTTEE-EEEEESCBC-TTCCCC------CCCCCCEEEEESCBCC-----
T ss_pred cccCCeecCCCCcccc-----ch--hhhhhhccccc-EEECCCCcc-ccccccccccccccchhhcccccccccc-----
Confidence 9999999877655432 11 11123345555 677766432 1111011112344667888998877532
Q ss_pred CcccccccchhhHHHHhhcCCCCCCCcEEEEeccCCCcccCCchhh-cccccccEEEEeCCCCC
Q 037953 302 WPEAISNENAAKHEAICEALWPPPNLESLEIAGFRGRKMMLSTNWM-ASLNMLKKLRLLNCPTC 364 (625)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~p~~l-~~l~~L~~L~L~~c~~l 364 (625)
......++..+..+++|+.|++++|....+ |.++ ..+++|++|++++|+..
T Consensus 263 ---------~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i---~~~~~~~l~~L~~L~L~~N~~~ 314 (353)
T 2z80_A 263 ---------DESLFQVMKLLNQISGLLELEFSRNQLKSV---PDGIFDRLTSLQKIWLHTNPWD 314 (353)
T ss_dssp ---------HHHHHHHHHHHHTCTTCCEEECCSSCCCCC---CTTTTTTCTTCCEEECCSSCBC
T ss_pred ---------CcchhhhHHHHhcccCCCEEECCCCCCCcc---CHHHHhcCCCCCEEEeeCCCcc
Confidence 012346777888899999999999998877 7775 79999999999997533
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.77 E-value=3e-19 Score=180.65 Aligned_cols=239 Identities=19% Similarity=0.094 Sum_probs=170.0
Q ss_pred EEEEEcCCCCcchhhhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhh---hcccc
Q 037953 76 HLMLVLGYEAPSLVSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEI---LNGVE 152 (625)
Q Consensus 76 ~L~l~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~l---p~~~~ 152 (625)
.+...++.+..+|..+. ++|++|++++|. +....+ ..|+++++|++|+|+ +|.+..+ |..+.
T Consensus 11 ~l~c~~~~l~~ip~~~~--~~l~~L~L~~n~--l~~i~~---~~~~~l~~L~~L~L~--------~n~l~~~~~~~~~~~ 75 (306)
T 2z66_A 11 EIRCNSKGLTSVPTGIP--SSATRLELESNK--LQSLPH---GVFDKLTQLTKLSLS--------SNGLSFKGCCSQSDF 75 (306)
T ss_dssp EEECCSSCCSSCCSCCC--TTCCEEECCSSC--CCCCCT---TTTTTCTTCSEEECC--------SSCCCEEEEEEHHHH
T ss_pred EEEcCCCCcccCCCCCC--CCCCEEECCCCc--cCccCH---hHhhccccCCEEECC--------CCccCcccCcccccc
Confidence 56666777778877553 689999999865 334444 567889999999999 7776544 55677
Q ss_pred cccccceecC-CC-CCCCchhhcCCCCCceEeecCCCCCCcccc--ccccccccceEEecCccccccc-ccCCCcccccc
Q 037953 153 KLIHLRYLKL-NL-VGDLPEKCCELLNLQTLELENSSHFKRFPQ--GIGKLINLRHLIFTEDLLEYMP-KGIEKLTSLRT 227 (625)
Q Consensus 153 ~L~~L~~L~L-~~-l~~lP~~i~~L~~L~~L~L~~~~~l~~lp~--~l~~L~~L~~L~l~~~~l~~lp-~~i~~L~~L~~ 227 (625)
.+++|++|++ .+ +..+|..+.++++|++|++++|. +..+|. .+.++++|++|+++.|.+..++ ..++.+++|++
T Consensus 76 ~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 154 (306)
T 2z66_A 76 GTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEV 154 (306)
T ss_dssp SCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSE-EESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCE
T ss_pred cccccCEEECCCCccccChhhcCCCCCCCEEECCCCc-ccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCE
Confidence 7888888888 44 77888888888888888888887 777764 5788888888888777665543 34566666666
Q ss_pred CCceEecCCCCcCCCcccChhccccccccccceEEeccCCCCChhHHHHhccCCCCCCCeEEEEEecccccccCCccccc
Q 037953 228 LSEFVVASGGGRYGSEACKLEGLRHLNHLRGSLKVRGLGNVADVDEVKNAHLEKKKNLVRLILRFKDIDKAVKRWPEAIS 307 (625)
Q Consensus 228 L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 307 (625)
|++..+.... ...+..+..+++|+.|++++|.++
T Consensus 155 L~l~~n~l~~-----------------------------------~~~~~~~~~l~~L~~L~Ls~n~l~----------- 188 (306)
T 2z66_A 155 LKMAGNSFQE-----------------------------------NFLPDIFTELRNLTFLDLSQCQLE----------- 188 (306)
T ss_dssp EECTTCEEGG-----------------------------------GEECSCCTTCTTCCEEECTTSCCC-----------
T ss_pred EECCCCcccc-----------------------------------ccchhHHhhCcCCCEEECCCCCcC-----------
Confidence 6543221110 012224556677888888777432
Q ss_pred ccchhhHHHHhhcCCCCCCCcEEEEeccCCCcccCCchhhcccccccEEEEeCCCCCCCCC-CCCCCC-Ccceeeccccc
Q 037953 308 NENAAKHEAICEALWPPPNLESLEIAGFRGRKMMLSTNWMASLNMLKKLRLLNCPTCEIMP-PLGQLP-SLEILLIKDMT 385 (625)
Q Consensus 308 ~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~p~~l~~l~~L~~L~L~~c~~l~~l~-~l~~l~-~L~~L~L~~~~ 385 (625)
...+..+..+++|+.|++++|...... +..+..+++|+.|++++|...+..+ .+..++ +|+.|++++|+
T Consensus 189 -------~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 189 -------QLSPTAFNSLSSLQVLNMSHNNFFSLD--TFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp -------EECTTTTTTCTTCCEEECTTSCCSBCC--SGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred -------CcCHHHhcCCCCCCEEECCCCccCccC--hhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCC
Confidence 222456777889999999998877752 4467789999999999976555444 477774 99999999977
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=99.77 E-value=3.3e-19 Score=190.60 Aligned_cols=238 Identities=19% Similarity=0.188 Sum_probs=179.3
Q ss_pred ceEEEEEEcCCCCcchhhhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhhh-ccc
Q 037953 73 KLRHLMLVLGYEAPSLVSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEIL-NGV 151 (625)
Q Consensus 73 ~lr~L~l~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp-~~~ 151 (625)
..+.+...+..+..+|..+. +++++|++++|. +....| ..|.++++|++|+|+ +|.+..++ ..|
T Consensus 55 ~~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~--i~~~~~---~~~~~l~~L~~L~Ls--------~n~i~~~~~~~~ 119 (452)
T 3zyi_A 55 QFSKVVCTRRGLSEVPQGIP--SNTRYLNLMENN--IQMIQA---DTFRHLHHLEVLQLG--------RNSIRQIEVGAF 119 (452)
T ss_dssp SSCEEECCSSCCSSCCSCCC--TTCSEEECCSSC--CCEECT---TTTTTCTTCCEEECC--------SSCCCEECTTTT
T ss_pred CCcEEEECCCCcCccCCCCC--CCccEEECcCCc--CceECH---HHcCCCCCCCEEECC--------CCccCCcChhhc
Confidence 34567777777888887654 789999999965 555666 789999999999999 88877764 678
Q ss_pred ccccccceecC-CC-CCCCchh-hcCCCCCceEeecCCCCCCcccc-ccccccccceEEe-cCccccccccc-CCCcccc
Q 037953 152 EKLIHLRYLKL-NL-VGDLPEK-CCELLNLQTLELENSSHFKRFPQ-GIGKLINLRHLIF-TEDLLEYMPKG-IEKLTSL 225 (625)
Q Consensus 152 ~~L~~L~~L~L-~~-l~~lP~~-i~~L~~L~~L~L~~~~~l~~lp~-~l~~L~~L~~L~l-~~~~l~~lp~~-i~~L~~L 225 (625)
.++++|++|+| .+ +..+|.. +.++++|++|+|++|. +..+|. .+.++++|++|++ .++.++.+|.. +..+++|
T Consensus 120 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L 198 (452)
T 3zyi_A 120 NGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNP-IESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNL 198 (452)
T ss_dssp TTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTC
T ss_pred cCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCC-cceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCC
Confidence 99999999999 44 8888765 7889999999999998 888876 4889999999999 55777777754 6677777
Q ss_pred ccCCceEecCCCCcCCCcccChhccccccccccceEEeccCCCCChhHHHHhccCCCCCCCeEEEEEecccccccCCccc
Q 037953 226 RTLSEFVVASGGGRYGSEACKLEGLRHLNHLRGSLKVRGLGNVADVDEVKNAHLEKKKNLVRLILRFKDIDKAVKRWPEA 305 (625)
Q Consensus 226 ~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~ 305 (625)
+.|++..+.... +. .+..+++|+.|++++|.++
T Consensus 199 ~~L~L~~n~l~~---------~~-----------------------------~~~~l~~L~~L~Ls~N~l~--------- 231 (452)
T 3zyi_A 199 KYLNLGMCNIKD---------MP-----------------------------NLTPLVGLEELEMSGNHFP--------- 231 (452)
T ss_dssp CEEECTTSCCSS---------CC-----------------------------CCTTCTTCCEEECTTSCCS---------
T ss_pred CEEECCCCcccc---------cc-----------------------------cccccccccEEECcCCcCc---------
Confidence 777654332211 01 1344566777777766422
Q ss_pred ccccchhhHHHHhhcCCCCCCCcEEEEeccCCCcccCCchhhcccccccEEEEeCCCCCCCCCC--CCCCCCcceeeccc
Q 037953 306 ISNENAAKHEAICEALWPPPNLESLEIAGFRGRKMMLSTNWMASLNMLKKLRLLNCPTCEIMPP--LGQLPSLEILLIKD 383 (625)
Q Consensus 306 ~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~p~~l~~l~~L~~L~L~~c~~l~~l~~--l~~l~~L~~L~L~~ 383 (625)
...+..+..+++|+.|++++|...... |..+..+++|+.|+|++| .+..++. +..+++|+.|+|++
T Consensus 232 ---------~~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~ 299 (452)
T 3zyi_A 232 ---------EIRPGSFHGLSSLKKLWVMNSQVSLIE--RNAFDGLASLVELNLAHN-NLSSLPHDLFTPLRYLVELHLHH 299 (452)
T ss_dssp ---------EECGGGGTTCTTCCEEECTTSCCCEEC--TTTTTTCTTCCEEECCSS-CCSCCCTTSSTTCTTCCEEECCS
T ss_pred ---------ccCcccccCccCCCEEEeCCCcCceEC--HHHhcCCCCCCEEECCCC-cCCccChHHhccccCCCEEEccC
Confidence 223456777888999999888877653 667888899999999986 4556653 67899999999998
Q ss_pred cc
Q 037953 384 MT 385 (625)
Q Consensus 384 ~~ 385 (625)
|+
T Consensus 300 Np 301 (452)
T 3zyi_A 300 NP 301 (452)
T ss_dssp SC
T ss_pred CC
Confidence 76
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.77 E-value=3.2e-19 Score=189.99 Aligned_cols=238 Identities=19% Similarity=0.215 Sum_probs=177.8
Q ss_pred ceEEEEEEcCCCCcchhhhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhhh-ccc
Q 037953 73 KLRHLMLVLGYEAPSLVSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEIL-NGV 151 (625)
Q Consensus 73 ~lr~L~l~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp-~~~ 151 (625)
..+.+...+..+..+|..+. ++++.|+|++|. +....+ ..|.++++|++|+|+ +|.+..++ ..|
T Consensus 44 ~~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~--i~~~~~---~~~~~l~~L~~L~Ls--------~n~i~~i~~~~~ 108 (440)
T 3zyj_A 44 QFSKVICVRKNLREVPDGIS--TNTRLLNLHENQ--IQIIKV---NSFKHLRHLEILQLS--------RNHIRTIEIGAF 108 (440)
T ss_dssp TSCEEECCSCCCSSCCSCCC--TTCSEEECCSCC--CCEECT---TTTSSCSSCCEEECC--------SSCCCEECGGGG
T ss_pred CCCEEEeCCCCcCcCCCCCC--CCCcEEEccCCc--CCeeCH---HHhhCCCCCCEEECC--------CCcCCccChhhc
Confidence 34567777777888887664 789999999965 455556 778999999999999 88877765 568
Q ss_pred ccccccceecC-CC-CCCCch-hhcCCCCCceEeecCCCCCCcccc-ccccccccceEEe-cCcccccccc-cCCCcccc
Q 037953 152 EKLIHLRYLKL-NL-VGDLPE-KCCELLNLQTLELENSSHFKRFPQ-GIGKLINLRHLIF-TEDLLEYMPK-GIEKLTSL 225 (625)
Q Consensus 152 ~~L~~L~~L~L-~~-l~~lP~-~i~~L~~L~~L~L~~~~~l~~lp~-~l~~L~~L~~L~l-~~~~l~~lp~-~i~~L~~L 225 (625)
.++++|++|+| ++ +..+|. .+..+++|++|+|++|. +..+|. .+.++++|++|++ .++.+..+|. .+.++++|
T Consensus 109 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L 187 (440)
T 3zyj_A 109 NGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNP-IESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNL 187 (440)
T ss_dssp TTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSC
T ss_pred cCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCc-ccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhccccc
Confidence 89999999999 44 888876 58899999999999998 887776 4888999999999 5577777765 36677777
Q ss_pred ccCCceEecCCCCcCCCcccChhccccccccccceEEeccCCCCChhHHHHhccCCCCCCCeEEEEEecccccccCCccc
Q 037953 226 RTLSEFVVASGGGRYGSEACKLEGLRHLNHLRGSLKVRGLGNVADVDEVKNAHLEKKKNLVRLILRFKDIDKAVKRWPEA 305 (625)
Q Consensus 226 ~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~ 305 (625)
+.|++..+.... +. .+..+++|+.|++++|.++
T Consensus 188 ~~L~L~~n~l~~---------~~-----------------------------~~~~l~~L~~L~Ls~N~l~--------- 220 (440)
T 3zyj_A 188 RYLNLAMCNLRE---------IP-----------------------------NLTPLIKLDELDLSGNHLS--------- 220 (440)
T ss_dssp CEEECTTSCCSS---------CC-----------------------------CCTTCSSCCEEECTTSCCC---------
T ss_pred CeecCCCCcCcc---------cc-----------------------------ccCCCcccCEEECCCCccC---------
Confidence 777654332211 11 1344566777777766422
Q ss_pred ccccchhhHHHHhhcCCCCCCCcEEEEeccCCCcccCCchhhcccccccEEEEeCCCCCCCCCC--CCCCCCcceeeccc
Q 037953 306 ISNENAAKHEAICEALWPPPNLESLEIAGFRGRKMMLSTNWMASLNMLKKLRLLNCPTCEIMPP--LGQLPSLEILLIKD 383 (625)
Q Consensus 306 ~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~p~~l~~l~~L~~L~L~~c~~l~~l~~--l~~l~~L~~L~L~~ 383 (625)
...+..+..+++|+.|++++|....+. +..+..+++|+.|+|++| .+..++. +..+++|+.|+|++
T Consensus 221 ---------~~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~ 288 (440)
T 3zyj_A 221 ---------AIRPGSFQGLMHLQKLWMIQSQIQVIE--RNAFDNLQSLVEINLAHN-NLTLLPHDLFTPLHHLERIHLHH 288 (440)
T ss_dssp ---------EECTTTTTTCTTCCEEECTTCCCCEEC--TTSSTTCTTCCEEECTTS-CCCCCCTTTTSSCTTCCEEECCS
T ss_pred ---------ccChhhhccCccCCEEECCCCceeEEC--hhhhcCCCCCCEEECCCC-CCCccChhHhccccCCCEEEcCC
Confidence 222456777888999999888877653 667788899999999986 4555553 67899999999998
Q ss_pred cc
Q 037953 384 MT 385 (625)
Q Consensus 384 ~~ 385 (625)
|+
T Consensus 289 Np 290 (440)
T 3zyj_A 289 NP 290 (440)
T ss_dssp SC
T ss_pred CC
Confidence 76
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.77 E-value=3.8e-19 Score=179.82 Aligned_cols=238 Identities=17% Similarity=0.129 Sum_probs=168.1
Q ss_pred eEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhhhcc-cccccccceecC-CC-CCCC---chh
Q 037953 98 RSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEILNG-VEKLIHLRYLKL-NL-VGDL---PEK 171 (625)
Q Consensus 98 r~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp~~-~~~L~~L~~L~L-~~-l~~l---P~~ 171 (625)
+.++++++. ...+| . .-.++|++|+|+ +|.+..+|.. |+++++|++|+| ++ +..+ |..
T Consensus 10 ~~l~c~~~~---l~~ip---~--~~~~~l~~L~L~--------~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 73 (306)
T 2z66_A 10 TEIRCNSKG---LTSVP---T--GIPSSATRLELE--------SNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQS 73 (306)
T ss_dssp TEEECCSSC---CSSCC---S--CCCTTCCEEECC--------SSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHH
T ss_pred CEEEcCCCC---cccCC---C--CCCCCCCEEECC--------CCccCccCHhHhhccccCCEEECCCCccCcccCcccc
Confidence 456766644 44555 3 223689999999 8888888765 788999999999 44 6554 677
Q ss_pred hcCCCCCceEeecCCCCCCccccccccccccceEEecCcccccccc--cCCCccccccCCceEecCCCCcCCCcccChhc
Q 037953 172 CCELLNLQTLELENSSHFKRFPQGIGKLINLRHLIFTEDLLEYMPK--GIEKLTSLRTLSEFVVASGGGRYGSEACKLEG 249 (625)
Q Consensus 172 i~~L~~L~~L~L~~~~~l~~lp~~l~~L~~L~~L~l~~~~l~~lp~--~i~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~ 249 (625)
+..+++|++|++++|. +..+|..+..+++|++|+++.|.++.++. .+..+++|++|++..+...
T Consensus 74 ~~~~~~L~~L~Ls~n~-i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~------------- 139 (306)
T 2z66_A 74 DFGTTSLKYLDLSFNG-VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR------------- 139 (306)
T ss_dssp HHSCSCCCEEECCSCS-EEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCE-------------
T ss_pred cccccccCEEECCCCc-cccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCC-------------
Confidence 8889999999999998 88888888899999999998888877764 4666666666654322111
Q ss_pred cccccccccceEEeccCCCCChhHHHHhccCCCCCCCeEEEEEecccccccCCcccccccchhhHHHHhhcCCCCCCCcE
Q 037953 250 LRHLNHLRGSLKVRGLGNVADVDEVKNAHLEKKKNLVRLILRFKDIDKAVKRWPEAISNENAAKHEAICEALWPPPNLES 329 (625)
Q Consensus 250 l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~ 329 (625)
...+..+..+++|+.|++++|.+. ....+..+..+++|+.
T Consensus 140 -----------------------~~~~~~~~~l~~L~~L~l~~n~l~-----------------~~~~~~~~~~l~~L~~ 179 (306)
T 2z66_A 140 -----------------------VAFNGIFNGLSSLEVLKMAGNSFQ-----------------ENFLPDIFTELRNLTF 179 (306)
T ss_dssp -----------------------ECSTTTTTTCTTCCEEECTTCEEG-----------------GGEECSCCTTCTTCCE
T ss_pred -----------------------ccchhhcccCcCCCEEECCCCccc-----------------cccchhHHhhCcCCCE
Confidence 111223566778888888877522 1135567788899999
Q ss_pred EEEeccCCCcccCCchhhcccccccEEEEeCCCCCCCCC--CCCCCCCcceeeccccccceeeCccCCCCCCCCCCCCCC
Q 037953 330 LEIAGFRGRKMMLSTNWMASLNMLKKLRLLNCPTCEIMP--PLGQLPSLEILLIKDMTSVERVGDESLGIANGDHGAPSS 407 (625)
Q Consensus 330 L~L~~~~~~~~~~~p~~l~~l~~L~~L~L~~c~~l~~l~--~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~ 407 (625)
|++++|...... |.++..+++|+.|++++|. +..++ .+..+++|+.|++++|. +...+...
T Consensus 180 L~Ls~n~l~~~~--~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~------------- 242 (306)
T 2z66_A 180 LDLSQCQLEQLS--PTAFNSLSSLQVLNMSHNN-FFSLDTFPYKCLNSLQVLDYSLNH-IMTSKKQE------------- 242 (306)
T ss_dssp EECTTSCCCEEC--TTTTTTCTTCCEEECTTSC-CSBCCSGGGTTCTTCCEEECTTSC-CCBCSSSS-------------
T ss_pred EECCCCCcCCcC--HHHhcCCCCCCEEECCCCc-cCccChhhccCcccCCEeECCCCC-CcccCHHH-------------
Confidence 999998877653 6778889999999999865 44444 37789999999999886 43332211
Q ss_pred CCCCCCCCC-CCCeeeccCc
Q 037953 408 SSVNNIAFP-KLKELEFSGL 426 (625)
Q Consensus 408 ~~~~~~~l~-~L~~L~L~~~ 426 (625)
+..++ +|+.|+++++
T Consensus 243 ----~~~~~~~L~~L~L~~N 258 (306)
T 2z66_A 243 ----LQHFPSSLAFLNLTQN 258 (306)
T ss_dssp ----CCCCCTTCCEEECTTC
T ss_pred ----HHhhhccCCEEEccCC
Confidence 34443 6777777764
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=99.77 E-value=9.1e-21 Score=210.11 Aligned_cols=380 Identities=14% Similarity=0.048 Sum_probs=179.2
Q ss_pred CceEEEEEEcCCCC-cchhhhc-cCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhhhc
Q 037953 72 EKLRHLMLVLGYEA-PSLVSIF-NAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEILN 149 (625)
Q Consensus 72 ~~lr~L~l~~~~~~-~~~~~~~-~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp~ 149 (625)
+++++|+++++.+. ..+..+. .+++|++|++++|.......++ ..+.++++|++|+|++|... +.....++.
T Consensus 105 ~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~---~~~~~~~~L~~L~L~~~~i~---~~~~~~l~~ 178 (594)
T 2p1m_B 105 TWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLA---AIAATCRNLKELDLRESDVD---DVSGHWLSH 178 (594)
T ss_dssp TTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHH---HHHHHCTTCCEEECTTCEEE---CCCGGGGGG
T ss_pred CCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHH---HHHHhCCCCCEEeCcCCccC---CcchHHHHH
Confidence 45666666665542 2223332 4566666666665311112233 44456666666666622200 000112232
Q ss_pred ccccccccceecC--CC--C--CCCchhhcCCCCCceEeecCCCCCCccccccccccccceEEecCc-------cccccc
Q 037953 150 GVEKLIHLRYLKL--NL--V--GDLPEKCCELLNLQTLELENSSHFKRFPQGIGKLINLRHLIFTED-------LLEYMP 216 (625)
Q Consensus 150 ~~~~L~~L~~L~L--~~--l--~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~l~~L~~L~~L~l~~~-------~l~~lp 216 (625)
....+++|++|++ |. + ..++..+.++++|++|++++|..++.+|..+.++++|++|+++.+ .+..++
T Consensus 179 ~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~ 258 (594)
T 2p1m_B 179 FPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLS 258 (594)
T ss_dssp SCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHH
T ss_pred HhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHH
Confidence 2335556666666 22 1 112222344566666666666445555555666666666664221 223333
Q ss_pred ccCCCccccccCCceEecCCCCcCCCcccChh-ccccccccccceEEeccCCCCChhHHHHhccCCCCCCCeEEEEEecc
Q 037953 217 KGIEKLTSLRTLSEFVVASGGGRYGSEACKLE-GLRHLNHLRGSLKVRGLGNVADVDEVKNAHLEKKKNLVRLILRFKDI 295 (625)
Q Consensus 217 ~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~l~-~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 295 (625)
..++++++|+.|.. ..... ...+. ....+++|+ .|.+.++. +. .......+..+++|+.|+++++.
T Consensus 259 ~~l~~~~~L~~Ls~--~~~~~------~~~l~~~~~~~~~L~-~L~L~~~~-l~--~~~l~~~~~~~~~L~~L~l~~~~- 325 (594)
T 2p1m_B 259 VALSGCKELRCLSG--FWDAV------PAYLPAVYSVCSRLT-TLNLSYAT-VQ--SYDLVKLLCQCPKLQRLWVLDYI- 325 (594)
T ss_dssp HHHHTCTTCCEEEC--CBTCC------GGGGGGGHHHHTTCC-EEECTTCC-CC--HHHHHHHHTTCTTCCEEEEEGGG-
T ss_pred HHHhcCCCcccccC--Ccccc------hhhHHHHHHhhCCCC-EEEccCCC-CC--HHHHHHHHhcCCCcCEEeCcCcc-
Confidence 34455555555411 11111 11111 122445566 67776654 22 22334446677888888888652
Q ss_pred cccccCCcccccccchhhHHHHhhcCCCCCCCcEEEEecc--------CCCcccCCchhhcccccccEEEEeCCCCCCCC
Q 037953 296 DKAVKRWPEAISNENAAKHEAICEALWPPPNLESLEIAGF--------RGRKMMLSTNWMASLNMLKKLRLLNCPTCEIM 367 (625)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~--------~~~~~~~~p~~l~~l~~L~~L~L~~c~~l~~l 367 (625)
....+......+++|+.|++.++ ..............+++|+.|.+.. +.++..
T Consensus 326 -----------------~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~-~~l~~~ 387 (594)
T 2p1m_B 326 -----------------EDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFC-RQMTNA 387 (594)
T ss_dssp -----------------HHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEE-SCCCHH
T ss_pred -----------------CHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhc-CCcCHH
Confidence 12223333334678888888442 2111000011122477888885543 444321
Q ss_pred --CCCC-CCCCcceeecc-----ccccceeeCccCCCCCCCCCCCCCCCCCCCCCCCCCCeeeccCcccccccccCCCCc
Q 037953 368 --PPLG-QLPSLEILLIK-----DMTSVERVGDESLGIANGDHGAPSSSSVNNIAFPKLKELEFSGLQEWEDWDFRKEDI 439 (625)
Q Consensus 368 --~~l~-~l~~L~~L~L~-----~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~ 439 (625)
..+. .+++|+.|+++ +|..++..|.+. ++. .....+++|+.|++++ .+....+..- .
T Consensus 388 ~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~-~~~-----------~l~~~~~~L~~L~L~~--~l~~~~~~~l-~ 452 (594)
T 2p1m_B 388 ALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDI-GFG-----------AIVEHCKDLRRLSLSG--LLTDKVFEYI-G 452 (594)
T ss_dssp HHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHH-HHH-----------HHHHHCTTCCEEECCS--SCCHHHHHHH-H
T ss_pred HHHHHHhhCCCcceeEeecccCCCcccccCCchhh-HHH-----------HHHhhCCCccEEeecC--cccHHHHHHH-H
Confidence 1222 47788888887 455554333110 000 0034567777777755 2222111100 0
Q ss_pred ccCCCccEEEEecCCCCCc--CCcCCCCCCCCCEEEEecCcchhhcccccccccCCCCceEEecCCC
Q 037953 440 TIMPQINSLSIYGCHKLKS--LPDQLLQSSTLKTLRINRCRVLEEHFKKDRSKISHIPDIQIYERGP 504 (625)
Q Consensus 440 ~~l~~L~~L~l~~c~~l~~--lp~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~l~~l~~l~~~~~~~ 504 (625)
..+++|+.|++++|. ++. ++.....+++|++|++++|+.-..........+++++.+.+.++..
T Consensus 453 ~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 453 TYAKKMEMLSVAFAG-DSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp HHCTTCCEEEEESCC-SSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred HhchhccEeeccCCC-CcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 026777777777764 322 1111133677777777777652111111223345566666655543
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.5e-17 Score=182.91 Aligned_cols=256 Identities=18% Similarity=0.155 Sum_probs=174.8
Q ss_pred CceeEEEeecCCCccccccchhhhhcccccccccceecC-CC-CCCCchhhcCCCCCceEeecCCCCCCccccccccccc
Q 037953 124 TCLRALRIEGTDNWELEEDQTNEILNGVEKLIHLRYLKL-NL-VGDLPEKCCELLNLQTLELENSSHFKRFPQGIGKLIN 201 (625)
Q Consensus 124 ~~Lr~L~Ls~c~~~~~~~~~l~~lp~~~~~L~~L~~L~L-~~-l~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~l~~L~~ 201 (625)
.++++|+++ +|.+..+|..+. ++|++|++ ++ +..+|. .+++|++|+|++|. ++.+|. .+++
T Consensus 40 ~~l~~L~ls--------~n~L~~lp~~l~--~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~-l~~lp~---~l~~ 102 (622)
T 3g06_A 40 NGNAVLNVG--------ESGLTTLPDCLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQ-LTSLPV---LPPG 102 (622)
T ss_dssp HCCCEEECC--------SSCCSCCCSCCC--TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCC-CSCCCC---CCTT
T ss_pred CCCcEEEec--------CCCcCccChhhC--CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCc-CCcCCC---CCCC
Confidence 346677777 666666666554 56777777 33 666665 46677777777776 667765 5667
Q ss_pred cceEEecCcccccccccCCCccccccCCceEecCCCCcCCCcccChhccccccccccceEEeccCCCCChhHHHHhccCC
Q 037953 202 LRHLIFTEDLLEYMPKGIEKLTSLRTLSEFVVASGGGRYGSEACKLEGLRHLNHLRGSLKVRGLGNVADVDEVKNAHLEK 281 (625)
Q Consensus 202 L~~L~l~~~~l~~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~ 281 (625)
|++|++++|.++.+|. .+++|+.|++..+.... + +. .
T Consensus 103 L~~L~Ls~N~l~~l~~---~l~~L~~L~L~~N~l~~------------------l------------p~----------~ 139 (622)
T 3g06_A 103 LLELSIFSNPLTHLPA---LPSGLCKLWIFGNQLTS------------------L------------PV----------L 139 (622)
T ss_dssp CCEEEECSCCCCCCCC---CCTTCCEEECCSSCCSC------------------C------------CC----------C
T ss_pred CCEEECcCCcCCCCCC---CCCCcCEEECCCCCCCc------------------C------------CC----------C
Confidence 7777776676666665 34445444433221111 0 00 1
Q ss_pred CCCCCeEEEEEecccccccCCcccccccchhhHHHHhhcCCCCCCCcEEEEeccCCCcccCCchhhcccccccEEEEeCC
Q 037953 282 KKNLVRLILRFKDIDKAVKRWPEAISNENAAKHEAICEALWPPPNLESLEIAGFRGRKMMLSTNWMASLNMLKKLRLLNC 361 (625)
Q Consensus 282 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~p~~l~~l~~L~~L~L~~c 361 (625)
+++|++|++++|.++ .++ ..+++|+.|++++|....+ | ..+++|+.|++++|
T Consensus 140 l~~L~~L~Ls~N~l~-------------------~l~---~~~~~L~~L~L~~N~l~~l---~---~~~~~L~~L~Ls~N 191 (622)
T 3g06_A 140 PPGLQELSVSDNQLA-------------------SLP---ALPSELCKLWAYNNQLTSL---P---MLPSGLQELSVSDN 191 (622)
T ss_dssp CTTCCEEECCSSCCS-------------------CCC---CCCTTCCEEECCSSCCSCC---C---CCCTTCCEEECCSS
T ss_pred CCCCCEEECcCCcCC-------------------CcC---CccCCCCEEECCCCCCCCC---c---ccCCCCcEEECCCC
Confidence 245666666665421 111 1246899999999998887 7 45799999999995
Q ss_pred CCCCCCCCCCCCCCcceeeccccccceeeCccCCCCCCCCCCCCCCCCCCCCCCCCCCeeeccCcccccccccCCCCccc
Q 037953 362 PTCEIMPPLGQLPSLEILLIKDMTSVERVGDESLGIANGDHGAPSSSSVNNIAFPKLKELEFSGLQEWEDWDFRKEDITI 441 (625)
Q Consensus 362 ~~l~~l~~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~ 441 (625)
. +..+|. .+++|+.|++++|. ++.+|. .+++|+.|+++++ .+..++ . .
T Consensus 192 ~-l~~l~~--~~~~L~~L~L~~N~-l~~l~~---------------------~~~~L~~L~Ls~N-~L~~lp---~---~ 239 (622)
T 3g06_A 192 Q-LASLPT--LPSELYKLWAYNNR-LTSLPA---------------------LPSGLKELIVSGN-RLTSLP---V---L 239 (622)
T ss_dssp C-CSCCCC--CCTTCCEEECCSSC-CSSCCC---------------------CCTTCCEEECCSS-CCSCCC---C---C
T ss_pred C-CCCCCC--ccchhhEEECcCCc-ccccCC---------------------CCCCCCEEEccCC-ccCcCC---C---C
Confidence 4 556664 35899999999875 555542 3588999999987 455554 2 5
Q ss_pred CCCccEEEEecCCCCCcCCcCCCCCCCCCEEEEecCcchhhcccccccccCCCCceEEecCCCC
Q 037953 442 MPQINSLSIYGCHKLKSLPDQLLQSSTLKTLRINRCRVLEEHFKKDRSKISHIPDIQIYERGPG 505 (625)
Q Consensus 442 l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~l~~l~~l~~~~~~~~ 505 (625)
+++|+.|++++| .++.+|. .+++|++|++++| .++.+| ..+..+.++..+.+.++...
T Consensus 240 l~~L~~L~Ls~N-~L~~lp~---~~~~L~~L~Ls~N-~L~~lp-~~l~~l~~L~~L~L~~N~l~ 297 (622)
T 3g06_A 240 PSELKELMVSGN-RLTSLPM---LPSGLLSLSVYRN-QLTRLP-ESLIHLSSETTVNLEGNPLS 297 (622)
T ss_dssp CTTCCEEECCSS-CCSCCCC---CCTTCCEEECCSS-CCCSCC-GGGGGSCTTCEEECCSCCCC
T ss_pred CCcCcEEECCCC-CCCcCCc---ccccCcEEeCCCC-CCCcCC-HHHhhccccCEEEecCCCCC
Confidence 799999999995 7889998 4789999999999 456777 56777888888888776544
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=4.7e-19 Score=177.25 Aligned_cols=141 Identities=19% Similarity=0.199 Sum_probs=89.7
Q ss_pred EEEEEEcCCCCcchhhhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhh-hccccc
Q 037953 75 RHLMLVLGYEAPSLVSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEI-LNGVEK 153 (625)
Q Consensus 75 r~L~l~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~l-p~~~~~ 153 (625)
+.++..++.+..+|..+ .++|++|++++|. +....+ ..|.++++|++|+++ +|.+..+ |..|++
T Consensus 14 ~~~~c~~~~l~~ip~~~--~~~l~~L~l~~n~--i~~~~~---~~~~~~~~L~~L~l~--------~n~l~~~~~~~~~~ 78 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI--PAASQRIFLHGNR--ISHVPA---ASFRACRNLTILWLH--------SNVLARIDAAAFTG 78 (285)
T ss_dssp CEEECCSSCCSSCCTTC--CTTCSEEECTTSC--CCEECT---TTTTTCTTCCEEECC--------SSCCCEECTTTTTT
T ss_pred eEEEcCcCCcccCCcCC--CCCceEEEeeCCc--CCccCH---HHcccCCCCCEEECC--------CCccceeCHhhcCC
Confidence 44555556666666543 3567777777754 344444 556777777777777 6666555 556777
Q ss_pred ccccceecC--CC-CCCC-chhhcCCCCCceEeecCCCCCCcc-ccccccccccceEEecCccccccccc-CCCcccccc
Q 037953 154 LIHLRYLKL--NL-VGDL-PEKCCELLNLQTLELENSSHFKRF-PQGIGKLINLRHLIFTEDLLEYMPKG-IEKLTSLRT 227 (625)
Q Consensus 154 L~~L~~L~L--~~-l~~l-P~~i~~L~~L~~L~L~~~~~l~~l-p~~l~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~ 227 (625)
+++|++|++ |. +..+ |..+.++++|++|++++|. +..+ |..+.++++|++|+++.|.++.+|.. ++.+++|+.
T Consensus 79 l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 157 (285)
T 1ozn_A 79 LALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCG-LQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTH 157 (285)
T ss_dssp CTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred ccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCc-CCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccE
Confidence 777777777 44 6666 4566777777777777776 5555 34466777777777766666666543 556666666
Q ss_pred CCce
Q 037953 228 LSEF 231 (625)
Q Consensus 228 L~~~ 231 (625)
|++.
T Consensus 158 L~l~ 161 (285)
T 1ozn_A 158 LFLH 161 (285)
T ss_dssp EECC
T ss_pred EECC
Confidence 5544
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.75 E-value=3.2e-20 Score=188.69 Aligned_cols=232 Identities=16% Similarity=0.116 Sum_probs=154.4
Q ss_pred eEEEEEEcCCCCcch-hhhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhhhcccc
Q 037953 74 LRHLMLVLGYEAPSL-VSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEILNGVE 152 (625)
Q Consensus 74 lr~L~l~~~~~~~~~-~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp~~~~ 152 (625)
++...+..+.+...+ ..+..+++|++|++++|. +....| ..|.++++|++|+|+ +|.+..+++ +.
T Consensus 12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~--l~~~~~---~~~~~l~~L~~L~Ls--------~n~l~~~~~-~~ 77 (317)
T 3o53_A 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNP--LSQISA---ADLAPFTKLELLNLS--------SNVLYETLD-LE 77 (317)
T ss_dssp EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSC--CCCCCH---HHHTTCTTCCEEECT--------TSCCEEEEE-ET
T ss_pred eeEeeccccchhhhHHHHhccCCCCCEEECcCCc--cCcCCH---HHhhCCCcCCEEECC--------CCcCCcchh-hh
Confidence 333344444443333 334556789999999965 556666 788999999999999 888776654 88
Q ss_pred cccccceecC-CC-CCCCchhhcCCCCCceEeecCCCCCCccccccccccccceEEecCcccccccc-cCCCccccccCC
Q 037953 153 KLIHLRYLKL-NL-VGDLPEKCCELLNLQTLELENSSHFKRFPQGIGKLINLRHLIFTEDLLEYMPK-GIEKLTSLRTLS 229 (625)
Q Consensus 153 ~L~~L~~L~L-~~-l~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~l~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~ 229 (625)
.+++|++|++ ++ +..+| ..++|++|++++|. +..++.. .+++|++|+++.|.++.++. .++.+++|+.|+
T Consensus 78 ~l~~L~~L~Ls~n~l~~l~----~~~~L~~L~l~~n~-l~~~~~~--~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~ 150 (317)
T 3o53_A 78 SLSTLRTLDLNNNYVQELL----VGPSIETLHAANNN-ISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLD 150 (317)
T ss_dssp TCTTCCEEECCSSEEEEEE----ECTTCCEEECCSSC-CSEEEEC--CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEE
T ss_pred hcCCCCEEECcCCcccccc----CCCCcCEEECCCCc-cCCcCcc--ccCCCCEEECCCCCCCCccchhhhccCCCCEEE
Confidence 8999999999 44 76665 34789999999988 7777644 46789999998888877754 566677777776
Q ss_pred ceEecCCCCcCCCcccChhccccccccccceEEeccCCCCChhHHHHhccCCCCCCCeEEEEEecccccccCCccccccc
Q 037953 230 EFVVASGGGRYGSEACKLEGLRHLNHLRGSLKVRGLGNVADVDEVKNAHLEKKKNLVRLILRFKDIDKAVKRWPEAISNE 309 (625)
Q Consensus 230 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 309 (625)
+..+.... .....+ ...+++|+.|++++|.++
T Consensus 151 Ls~N~l~~-------~~~~~~----------------------------~~~l~~L~~L~L~~N~l~------------- 182 (317)
T 3o53_A 151 LKLNEIDT-------VNFAEL----------------------------AASSDTLEHLNLQYNFIY------------- 182 (317)
T ss_dssp CTTSCCCE-------EEGGGG----------------------------GGGTTTCCEEECTTSCCC-------------
T ss_pred CCCCCCCc-------ccHHHH----------------------------hhccCcCCEEECCCCcCc-------------
Confidence 54332221 000111 123456666666655422
Q ss_pred chhhHHHHhhcCCCCCCCcEEEEeccCCCcccCCchhhcccccccEEEEeCCCCCCCCC-CCCCCCCcceeeccccc
Q 037953 310 NAAKHEAICEALWPPPNLESLEIAGFRGRKMMLSTNWMASLNMLKKLRLLNCPTCEIMP-PLGQLPSLEILLIKDMT 385 (625)
Q Consensus 310 ~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~p~~l~~l~~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~L~~~~ 385 (625)
.+ .....+++|+.|++++|....+ |..+..+++|+.|++++| .++.+| .+..+++|+.|++++|+
T Consensus 183 ------~~-~~~~~l~~L~~L~Ls~N~l~~l---~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~l~~L~~L~l~~N~ 248 (317)
T 3o53_A 183 ------DV-KGQVVFAKLKTLDLSSNKLAFM---GPEFQSAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGNG 248 (317)
T ss_dssp ------EE-ECCCCCTTCCEEECCSSCCCEE---CGGGGGGTTCSEEECTTS-CCCEECTTCCCCTTCCEEECTTCC
T ss_pred ------cc-ccccccccCCEEECCCCcCCcc---hhhhcccCcccEEECcCC-cccchhhHhhcCCCCCEEEccCCC
Confidence 01 1223467788888887777776 666777788888888875 444555 36777888888888776
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=99.75 E-value=3.1e-18 Score=182.99 Aligned_cols=237 Identities=22% Similarity=0.219 Sum_probs=172.1
Q ss_pred ceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhh-hcccccccccceecC--CCCCCCc-hhh
Q 037953 97 LRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEI-LNGVEKLIHLRYLKL--NLVGDLP-EKC 172 (625)
Q Consensus 97 Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~l-p~~~~~L~~L~~L~L--~~l~~lP-~~i 172 (625)
.+.++.++.. ...+| ..+ .++|++|+|+ +|.+..+ |..|+++++|++|+| |.+..++ ..+
T Consensus 56 ~~~v~c~~~~---l~~iP---~~~--~~~l~~L~L~--------~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~ 119 (452)
T 3zyi_A 56 FSKVVCTRRG---LSEVP---QGI--PSNTRYLNLM--------ENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAF 119 (452)
T ss_dssp SCEEECCSSC---CSSCC---SCC--CTTCSEEECC--------SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTT
T ss_pred CcEEEECCCC---cCccC---CCC--CCCccEEECc--------CCcCceECHHHcCCCCCCCEEECCCCccCCcChhhc
Confidence 4566666643 34455 322 3689999999 8887776 567999999999999 4476665 678
Q ss_pred cCCCCCceEeecCCCCCCccccc-cccccccceEEecCcccccccc-cCCCccccccCCceEecCCCCcCCCcccChhcc
Q 037953 173 CELLNLQTLELENSSHFKRFPQG-IGKLINLRHLIFTEDLLEYMPK-GIEKLTSLRTLSEFVVASGGGRYGSEACKLEGL 250 (625)
Q Consensus 173 ~~L~~L~~L~L~~~~~l~~lp~~-l~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~l 250 (625)
.++++|++|+|++|. +..+|.. +..+++|++|++++|.++.+|. .+.++++|+.|++..+....
T Consensus 120 ~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~------------- 185 (452)
T 3zyi_A 120 NGLASLNTLELFDNW-LTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLE------------- 185 (452)
T ss_dssp TTCTTCCEEECCSSC-CSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCC-------------
T ss_pred cCcccCCEEECCCCc-CCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCcc-------------
Confidence 899999999999998 8888776 8889999999998888888875 46777777777654322111
Q ss_pred ccccccccceEEeccCCCCChhHHHHhccCCCCCCCeEEEEEecccccccCCcccccccchhhHHHHhhcCCCCCCCcEE
Q 037953 251 RHLNHLRGSLKVRGLGNVADVDEVKNAHLEKKKNLVRLILRFKDIDKAVKRWPEAISNENAAKHEAICEALWPPPNLESL 330 (625)
Q Consensus 251 ~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L 330 (625)
.+ ....+..+++|+.|++++|.++ .+ ..+..+++|+.|
T Consensus 186 --------~i--------------~~~~~~~l~~L~~L~L~~n~l~-------------------~~-~~~~~l~~L~~L 223 (452)
T 3zyi_A 186 --------YI--------------SEGAFEGLFNLKYLNLGMCNIK-------------------DM-PNLTPLVGLEEL 223 (452)
T ss_dssp --------EE--------------CTTTTTTCTTCCEEECTTSCCS-------------------SC-CCCTTCTTCCEE
T ss_pred --------cc--------------ChhhccCCCCCCEEECCCCccc-------------------cc-ccccccccccEE
Confidence 00 0113566778888888877532 11 246788999999
Q ss_pred EEeccCCCcccCCchhhcccccccEEEEeCCCCCCCCC-CCCCCCCcceeeccccccceeeCccC-CCCCCCCCCCCCCC
Q 037953 331 EIAGFRGRKMMLSTNWMASLNMLKKLRLLNCPTCEIMP-PLGQLPSLEILLIKDMTSVERVGDES-LGIANGDHGAPSSS 408 (625)
Q Consensus 331 ~L~~~~~~~~~~~p~~l~~l~~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~L~~~~~l~~l~~~~-~~~~~~~~~~~~~~ 408 (625)
++++|...... |..+..+++|+.|++++|......+ .+..+++|+.|+|++|. ++.++.+. .....+..+.+++.
T Consensus 224 ~Ls~N~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N 300 (452)
T 3zyi_A 224 EMSGNHFPEIR--PGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNN-LSSLPHDLFTPLRYLVELHLHHN 300 (452)
T ss_dssp ECTTSCCSEEC--GGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CSCCCTTSSTTCTTCCEEECCSS
T ss_pred ECcCCcCcccC--cccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCc-CCccChHHhccccCCCEEEccCC
Confidence 99999887763 7788999999999999965443333 48889999999999975 77777554 33444444444443
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.1e-19 Score=184.76 Aligned_cols=268 Identities=12% Similarity=0.100 Sum_probs=174.3
Q ss_pred HHHhcCCceeEEEeecCCCccccccchhhhh-cccccccccceecC-CC-CCCCchhhcCCCCCceEeecCCCCCCcccc
Q 037953 118 GIFDQLTCLRALRIEGTDNWELEEDQTNEIL-NGVEKLIHLRYLKL-NL-VGDLPEKCCELLNLQTLELENSSHFKRFPQ 194 (625)
Q Consensus 118 ~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp-~~~~~L~~L~~L~L-~~-l~~lP~~i~~L~~L~~L~L~~~~~l~~lp~ 194 (625)
..+..+++|++|+|+ +|.+..++ ..|+.+++|++|+| ++ +..++. +..+++|++|++++|. ++.+|
T Consensus 28 ~~~~~~~~L~~L~L~--------~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~-l~~l~- 96 (317)
T 3o53_A 28 SLRQSAWNVKELDLS--------GNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNY-VQELL- 96 (317)
T ss_dssp HHHTTGGGCSEEECT--------TSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSE-EEEEE-
T ss_pred HHhccCCCCCEEECc--------CCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCc-ccccc-
Confidence 556667778888888 77766553 56777777888877 33 655554 7777777788777776 66555
Q ss_pred ccccccccceEEecCcccccccccCCCccccccCCceEecCCCCcCCCcccChhccccccccccceEEeccCCCCChhHH
Q 037953 195 GIGKLINLRHLIFTEDLLEYMPKGIEKLTSLRTLSEFVVASGGGRYGSEACKLEGLRHLNHLRGSLKVRGLGNVADVDEV 274 (625)
Q Consensus 195 ~l~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~L~l~~~~~~~~~~~~ 274 (625)
..++|++|+++.|.+..++... +++|++|++..+... ..
T Consensus 97 ---~~~~L~~L~l~~n~l~~~~~~~--~~~L~~L~l~~N~l~------------------------------------~~ 135 (317)
T 3o53_A 97 ---VGPSIETLHAANNNISRVSCSR--GQGKKNIYLANNKIT------------------------------------ML 135 (317)
T ss_dssp ---ECTTCCEEECCSSCCSEEEECC--CSSCEEEECCSSCCC------------------------------------SG
T ss_pred ---CCCCcCEEECCCCccCCcCccc--cCCCCEEECCCCCCC------------------------------------Cc
Confidence 3377777777777666655322 444554444322211 11
Q ss_pred HHhccCCCCCCCeEEEEEecccccccCCcccccccchhhHHHHhhcC-CCCCCCcEEEEeccCCCcccCCchhhcccccc
Q 037953 275 KNAHLEKKKNLVRLILRFKDIDKAVKRWPEAISNENAAKHEAICEAL-WPPPNLESLEIAGFRGRKMMLSTNWMASLNML 353 (625)
Q Consensus 275 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~L~~L~L~~~~~~~~~~~p~~l~~l~~L 353 (625)
.+..+..+++|+.|++++|.++ ...+..+ ..+++|+.|++++|....+ |... .+++|
T Consensus 136 ~~~~~~~l~~L~~L~Ls~N~l~------------------~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~-~l~~L 193 (317)
T 3o53_A 136 RDLDEGCRSRVQYLDLKLNEID------------------TVNFAELAASSDTLEHLNLQYNFIYDV---KGQV-VFAKL 193 (317)
T ss_dssp GGBCTGGGSSEEEEECTTSCCC------------------EEEGGGGGGGTTTCCEEECTTSCCCEE---ECCC-CCTTC
T ss_pred cchhhhccCCCCEEECCCCCCC------------------cccHHHHhhccCcCCEEECCCCcCccc---cccc-ccccC
Confidence 2223455677777777776432 1112222 3578999999999998876 5433 58999
Q ss_pred cEEEEeCCCCCCCCC-CCCCCCCcceeeccccccceeeCccCCCCCCCCCCCCCCCCCCCCCCCCCCeeeccCcccc-cc
Q 037953 354 KKLRLLNCPTCEIMP-PLGQLPSLEILLIKDMTSVERVGDESLGIANGDHGAPSSSSVNNIAFPKLKELEFSGLQEW-ED 431 (625)
Q Consensus 354 ~~L~L~~c~~l~~l~-~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l-~~ 431 (625)
+.|++++|. +..+| .+..+++|+.|++++|. ++.+|.. +..+++|+.|++++++-. ..
T Consensus 194 ~~L~Ls~N~-l~~l~~~~~~l~~L~~L~L~~N~-l~~l~~~------------------~~~l~~L~~L~l~~N~~~~~~ 253 (317)
T 3o53_A 194 KTLDLSSNK-LAFMGPEFQSAAGVTWISLRNNK-LVLIEKA------------------LRFSQNLEHFDLRGNGFHCGT 253 (317)
T ss_dssp CEEECCSSC-CCEECGGGGGGTTCSEEECTTSC-CCEECTT------------------CCCCTTCCEEECTTCCCBHHH
T ss_pred CEEECCCCc-CCcchhhhcccCcccEEECcCCc-ccchhhH------------------hhcCCCCCEEEccCCCccCcC
Confidence 999999964 45554 57889999999999976 7777764 567899999999986532 11
Q ss_pred cccCCCCcccCCCccEEEEecCCCCCcCCcCCCCCCCCCEEEEecCcchhh
Q 037953 432 WDFRKEDITIMPQINSLSIYGCHKLKSLPDQLLQSSTLKTLRINRCRVLEE 482 (625)
Q Consensus 432 ~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~L~~ 482 (625)
++ ..+..+++|+.|++.+|+.++..+......+.+....-..|..+..
T Consensus 254 ~~---~~~~~~~~L~~l~l~~~~~l~~~~~~~~~~~~~~~~~~~cc~~l~~ 301 (317)
T 3o53_A 254 LR---DFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPA 301 (317)
T ss_dssp HH---HHHHTCHHHHHHHHHHHHHHHSSSSCCCSSTTCEEETTEEEBCCTT
T ss_pred HH---HHHhccccceEEECCCchhccCCchhccCCCceecccceeeccCCh
Confidence 11 1133689999999998877766544333334444443445655543
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.4e-19 Score=183.44 Aligned_cols=239 Identities=19% Similarity=0.187 Sum_probs=140.0
Q ss_pred eEEEEEEcCCCCcchhhhccCCcceEEEeecccCCccccCchhhHHHh-------cCCceeEEEeecCCCccccccchh-
Q 037953 74 LRHLMLVLGYEAPSLVSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFD-------QLTCLRALRIEGTDNWELEEDQTN- 145 (625)
Q Consensus 74 lr~L~l~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~-------~l~~Lr~L~Ls~c~~~~~~~~~l~- 145 (625)
++.+.+.+|.+ .+|..+... |++|++++|... ...+| ..+. ++++|++|+|+ +|.+.
T Consensus 45 L~~l~l~~n~l-~~p~~~~~~--L~~L~L~~n~l~-~~~~~---~~~~~~~~~~~~l~~L~~L~L~--------~n~l~~ 109 (312)
T 1wwl_A 45 LEYLLKRVDTE-ADLGQFTDI--IKSLSLKRLTVR-AARIP---SRILFGALRVLGISGLQELTLE--------NLEVTG 109 (312)
T ss_dssp CTTHHHHCCTT-CCCHHHHHH--HHHCCCCEEEEE-EEECB---HHHHHHHHHHHTTSCCCEEEEE--------EEBCBS
T ss_pred ceeEeeccccc-ccHHHHHHH--Hhhccccccccc-CCCcC---HHHHHHHHHhcCcCCccEEEcc--------CCcccc
Confidence 34444444444 445544433 666666664311 11233 3333 46666666666 55544
Q ss_pred hhhccc--ccccccceecC-CC-CCCCchhhcCC-----CCCceEeecCCCCCCccc-cccccccccceEEecCccccc-
Q 037953 146 EILNGV--EKLIHLRYLKL-NL-VGDLPEKCCEL-----LNLQTLELENSSHFKRFP-QGIGKLINLRHLIFTEDLLEY- 214 (625)
Q Consensus 146 ~lp~~~--~~L~~L~~L~L-~~-l~~lP~~i~~L-----~~L~~L~L~~~~~l~~lp-~~l~~L~~L~~L~l~~~~l~~- 214 (625)
.+|..+ +.+++|++|+| ++ +..+|..++.+ ++|++|++++|. +..+| ..++++++|++|++++|.+..
T Consensus 110 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 188 (312)
T 1wwl_A 110 TAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAH-SLNFSCEQVRVFPALSTLDLSDNPELGE 188 (312)
T ss_dssp CCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCS-CCCCCTTTCCCCSSCCEEECCSCTTCHH
T ss_pred hhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCC-CccchHHHhccCCCCCEEECCCCCcCcc
Confidence 445544 55666666666 33 55555555554 566666666665 44444 445666666666665554322
Q ss_pred --ccccC--CCccccccCCceEecCCCCcCCCcccChhccccccccccceEEeccCCCCChhHHHHhccCCCCCCCeEEE
Q 037953 215 --MPKGI--EKLTSLRTLSEFVVASGGGRYGSEACKLEGLRHLNHLRGSLKVRGLGNVADVDEVKNAHLEKKKNLVRLIL 290 (625)
Q Consensus 215 --lp~~i--~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l 290 (625)
+|..+ +.+++|+ .|.+++.. +..........+..+++|+.|++
T Consensus 189 ~~~~~~~~~~~l~~L~--------------------------------~L~L~~N~-l~~~~~~~~~~~~~l~~L~~L~L 235 (312)
T 1wwl_A 189 RGLISALCPLKFPTLQ--------------------------------VLALRNAG-METPSGVCSALAAARVQLQGLDL 235 (312)
T ss_dssp HHHHHHSCTTSCTTCC--------------------------------EEECTTSC-CCCHHHHHHHHHHTTCCCSEEEC
T ss_pred hHHHHHHHhccCCCCC--------------------------------EEECCCCc-CcchHHHHHHHHhcCCCCCEEEC
Confidence 12222 3344444 44443321 12222323334556789999999
Q ss_pred EEecccccccCCcccccccchhhHHHH-hhcCCCCCCCcEEEEeccCCCcccCCchhhcccccccEEEEeCCCCCCCCCC
Q 037953 291 RFKDIDKAVKRWPEAISNENAAKHEAI-CEALWPPPNLESLEIAGFRGRKMMLSTNWMASLNMLKKLRLLNCPTCEIMPP 369 (625)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~L~~L~L~~~~~~~~~~~p~~l~~l~~L~~L~L~~c~~l~~l~~ 369 (625)
++|.++ ... ...+..+++|+.|++++|....+ |.++. ++|++|++++| .++.+|.
T Consensus 236 s~N~l~------------------~~~~~~~~~~l~~L~~L~Ls~N~l~~i---p~~~~--~~L~~L~Ls~N-~l~~~p~ 291 (312)
T 1wwl_A 236 SHNSLR------------------DAAGAPSCDWPSQLNSLNLSFTGLKQV---PKGLP--AKLSVLDLSYN-RLDRNPS 291 (312)
T ss_dssp TTSCCC------------------SSCCCSCCCCCTTCCEEECTTSCCSSC---CSSCC--SEEEEEECCSS-CCCSCCC
T ss_pred CCCcCC------------------cccchhhhhhcCCCCEEECCCCccChh---hhhcc--CCceEEECCCC-CCCCChh
Confidence 988533 111 12345578999999999998877 88776 89999999995 5666688
Q ss_pred CCCCCCcceeeccccc
Q 037953 370 LGQLPSLEILLIKDMT 385 (625)
Q Consensus 370 l~~l~~L~~L~L~~~~ 385 (625)
+..+++|++|++++|+
T Consensus 292 ~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 292 PDELPQVGNLSLKGNP 307 (312)
T ss_dssp TTTSCEEEEEECTTCT
T ss_pred HhhCCCCCEEeccCCC
Confidence 8999999999999976
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=1.2e-18 Score=174.27 Aligned_cols=215 Identities=17% Similarity=0.124 Sum_probs=139.9
Q ss_pred eEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhhh-cccccccccceecC-CC-CCCC-chhhc
Q 037953 98 RSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEIL-NGVEKLIHLRYLKL-NL-VGDL-PEKCC 173 (625)
Q Consensus 98 r~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp-~~~~~L~~L~~L~L-~~-l~~l-P~~i~ 173 (625)
++++++++. ...+| . .-.++|++|+++ +|.+..+| ..|+++++|++|++ .+ +..+ |..+.
T Consensus 14 ~~~~c~~~~---l~~ip---~--~~~~~l~~L~l~--------~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 77 (285)
T 1ozn_A 14 VTTSCPQQG---LQAVP---V--GIPAASQRIFLH--------GNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFT 77 (285)
T ss_dssp CEEECCSSC---CSSCC---T--TCCTTCSEEECT--------TSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTT
T ss_pred eEEEcCcCC---cccCC---c--CCCCCceEEEee--------CCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcC
Confidence 567777654 44555 2 345799999999 88888776 45899999999999 44 6666 67899
Q ss_pred CCCCCceEeecCCCCCCcc-ccccccccccceEEecCccccccc-ccCCCccccccCCceEecCCCCcCCCcccChhccc
Q 037953 174 ELLNLQTLELENSSHFKRF-PQGIGKLINLRHLIFTEDLLEYMP-KGIEKLTSLRTLSEFVVASGGGRYGSEACKLEGLR 251 (625)
Q Consensus 174 ~L~~L~~L~L~~~~~l~~l-p~~l~~L~~L~~L~l~~~~l~~lp-~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~l~ 251 (625)
++++|++|++++|..++.+ |..+.++++|++|+++.|.++.++ ..++++++|++|++..+.... ....
T Consensus 78 ~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-------~~~~--- 147 (285)
T 1ozn_A 78 GLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQA-------LPDD--- 147 (285)
T ss_dssp TCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCC-------CCTT---
T ss_pred CccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccc-------cCHh---
Confidence 9999999999999757777 566899999999999888887774 457778888877765443322 0111
Q ss_pred cccccccceEEeccCCCCChhHHHHhccCCCCCCCeEEEEEecccccccCCcccccccchhhHHHHhhcCCCCCCCcEEE
Q 037953 252 HLNHLRGSLKVRGLGNVADVDEVKNAHLEKKKNLVRLILRFKDIDKAVKRWPEAISNENAAKHEAICEALWPPPNLESLE 331 (625)
Q Consensus 252 ~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~ 331 (625)
.+..+++|+.|++++|.++ ......+..+++|+.|+
T Consensus 148 --------------------------~~~~l~~L~~L~l~~n~l~------------------~~~~~~~~~l~~L~~L~ 183 (285)
T 1ozn_A 148 --------------------------TFRDLGNLTHLFLHGNRIS------------------SVPERAFRGLHSLDRLL 183 (285)
T ss_dssp --------------------------TTTTCTTCCEEECCSSCCC------------------EECTTTTTTCTTCCEEE
T ss_pred --------------------------HhccCCCccEEECCCCccc------------------ccCHHHhcCccccCEEE
Confidence 1333445555555544311 00111344556666666
Q ss_pred EeccCCCcccCCchhhcccccccEEEEeCCCCCCCCC--CCCCCCCcceeeccccc
Q 037953 332 IAGFRGRKMMLSTNWMASLNMLKKLRLLNCPTCEIMP--PLGQLPSLEILLIKDMT 385 (625)
Q Consensus 332 L~~~~~~~~~~~p~~l~~l~~L~~L~L~~c~~l~~l~--~l~~l~~L~~L~L~~~~ 385 (625)
+++|...... |.++..+++|+.|++++|. +..++ .+..+++|+.|++++|+
T Consensus 184 l~~n~l~~~~--~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 184 LHQNRVAHVH--PHAFRDLGRLMTLYLFANN-LSALPTEALAPLRALQYLRLNDNP 236 (285)
T ss_dssp CCSSCCCEEC--TTTTTTCTTCCEEECCSSC-CSCCCHHHHTTCTTCCEEECCSSC
T ss_pred CCCCcccccC--HhHccCcccccEeeCCCCc-CCcCCHHHcccCcccCEEeccCCC
Confidence 6666554432 5556666666666666643 33344 25566666666666654
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.7e-18 Score=184.46 Aligned_cols=152 Identities=22% Similarity=0.195 Sum_probs=130.1
Q ss_pred CCCCceEEEEEEcCCCCcch-hhhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhh
Q 037953 69 TCPEKLRHLMLVLGYEAPSL-VSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEI 147 (625)
Q Consensus 69 ~~~~~lr~L~l~~~~~~~~~-~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~l 147 (625)
..+.+++.|++++|.+..++ ..+.++++|++|+|++|. +....+ ..|.++++|++|+|+ +|.+..+
T Consensus 61 ~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~--i~~i~~---~~~~~l~~L~~L~L~--------~n~l~~~ 127 (440)
T 3zyj_A 61 GISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNH--IRTIEI---GAFNGLANLNTLELF--------DNRLTTI 127 (440)
T ss_dssp CCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSC--CCEECG---GGGTTCSSCCEEECC--------SSCCSSC
T ss_pred CCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCc--CCccCh---hhccCCccCCEEECC--------CCcCCee
Confidence 34678999999999997775 688999999999999975 555666 789999999999999 9998888
Q ss_pred hc-ccccccccceecC-CC-CCCCch-hhcCCCCCceEeecCCCCCCccccc-cccccccceEEecCcccccccccCCCc
Q 037953 148 LN-GVEKLIHLRYLKL-NL-VGDLPE-KCCELLNLQTLELENSSHFKRFPQG-IGKLINLRHLIFTEDLLEYMPKGIEKL 222 (625)
Q Consensus 148 p~-~~~~L~~L~~L~L-~~-l~~lP~-~i~~L~~L~~L~L~~~~~l~~lp~~-l~~L~~L~~L~l~~~~l~~lp~~i~~L 222 (625)
|. .|..+++|++|+| ++ +..+|. .+.++++|++|++++|..++.+|.. +.++++|++|+++.|.++.+| .+..+
T Consensus 128 ~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l 206 (440)
T 3zyj_A 128 PNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP-NLTPL 206 (440)
T ss_dssp CTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC-CCTTC
T ss_pred CHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccc-ccCCC
Confidence 75 5999999999999 44 888875 6889999999999998778888774 899999999999999999997 47778
Q ss_pred cccccCCceEec
Q 037953 223 TSLRTLSEFVVA 234 (625)
Q Consensus 223 ~~L~~L~~~~~~ 234 (625)
++|+.|++..+.
T Consensus 207 ~~L~~L~Ls~N~ 218 (440)
T 3zyj_A 207 IKLDELDLSGNH 218 (440)
T ss_dssp SSCCEEECTTSC
T ss_pred cccCEEECCCCc
Confidence 888888765543
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
Probab=99.73 E-value=2.2e-20 Score=200.33 Aligned_cols=353 Identities=15% Similarity=0.090 Sum_probs=227.7
Q ss_pred CCceEEEEEEcCCCC-----cchhhhccCCcceEEEeecccCCcccc-CchhhHHHhcCC----ceeEEEeecCCCcccc
Q 037953 71 PEKLRHLMLVLGYEA-----PSLVSIFNAIKLRSLILFYWIPNLDAM-LPVLKGIFDQLT----CLRALRIEGTDNWELE 140 (625)
Q Consensus 71 ~~~lr~L~l~~~~~~-----~~~~~~~~l~~Lr~L~L~~~~~~~~~~-lp~~~~~~~~l~----~Lr~L~Ls~c~~~~~~ 140 (625)
.+++++|++++|.+. .++..+..+++|++|++++|. +... +. ..+..++ +|++|+|+
T Consensus 27 ~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~--l~~~~~~---~l~~~l~~~~~~L~~L~L~-------- 93 (461)
T 1z7x_W 27 LQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNE--LGDVGVH---CVLQGLQTPSCKIQKLSLQ-------- 93 (461)
T ss_dssp HTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCC--CHHHHHH---HHHHTTCSTTCCCCEEECT--------
T ss_pred cCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCc--CChHHHH---HHHHHHhhCCCceeEEEcc--------
Confidence 457999999999985 557778889999999999975 3332 22 3445566 79999999
Q ss_pred ccchh-----hhhcccccccccceecC-CC-CCCC-chhh-----cCCCCCceEeecCCCCCCc-----ccccccccccc
Q 037953 141 EDQTN-----EILNGVEKLIHLRYLKL-NL-VGDL-PEKC-----CELLNLQTLELENSSHFKR-----FPQGIGKLINL 202 (625)
Q Consensus 141 ~~~l~-----~lp~~~~~L~~L~~L~L-~~-l~~l-P~~i-----~~L~~L~~L~L~~~~~l~~-----lp~~l~~L~~L 202 (625)
+|.+. .+|..+..+++|++|++ .+ +... +..+ ...++|++|++++|. ++. ++..+..+++|
T Consensus 94 ~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L 172 (461)
T 1z7x_W 94 NCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCS-LSAASCEPLASVLRAKPDF 172 (461)
T ss_dssp TSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CBGGGHHHHHHHHHHCTTC
T ss_pred CCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCC-CCHHHHHHHHHHHhhCCCC
Confidence 66644 67888999999999999 44 5432 2222 236789999999998 764 45667888999
Q ss_pred ceEEecCccccccc-ccCC-----CccccccCCceEecCCCCcCCCcccChhccccccccccceEEeccCCCCCh--hHH
Q 037953 203 RHLIFTEDLLEYMP-KGIE-----KLTSLRTLSEFVVASGGGRYGSEACKLEGLRHLNHLRGSLKVRGLGNVADV--DEV 274 (625)
Q Consensus 203 ~~L~l~~~~l~~lp-~~i~-----~L~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~L~l~~~~~~~~~--~~~ 274 (625)
++|++++|.++..+ ..+. ..++|++|++..+...... .......+..+++|+ .|.++++. +... ...
T Consensus 173 ~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~---~~~l~~~l~~~~~L~-~L~Ls~n~-l~~~~~~~l 247 (461)
T 1z7x_W 173 KELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDN---CRDLCGIVASKASLR-ELALGSNK-LGDVGMAEL 247 (461)
T ss_dssp CEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTH---HHHHHHHHHHCTTCC-EEECCSSB-CHHHHHHHH
T ss_pred CEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHH---HHHHHHHHHhCCCcc-EEeccCCc-CChHHHHHH
Confidence 99999877765432 1121 2457888877655433200 001133355667777 78887642 1111 011
Q ss_pred HHhccCCCCCCCeEEEEEecccccccCCcccccccchhhHHHHhhcCCCCCCCcEEEEeccCCCcccCCchhhc-----c
Q 037953 275 KNAHLEKKKNLVRLILRFKDIDKAVKRWPEAISNENAAKHEAICEALWPPPNLESLEIAGFRGRKMMLSTNWMA-----S 349 (625)
Q Consensus 275 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~p~~l~-----~ 349 (625)
.......+++|++|++++|.++ . .....++..+..+++|+.|++++|...... +..+. .
T Consensus 248 ~~~~~~~~~~L~~L~L~~n~l~-------~-------~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~--~~~l~~~l~~~ 311 (461)
T 1z7x_W 248 CPGLLHPSSRLRTLWIWECGIT-------A-------KGCGDLCRVLRAKESLKELSLAGNELGDEG--ARLLCETLLEP 311 (461)
T ss_dssp HHHHTSTTCCCCEEECTTSCCC-------H-------HHHHHHHHHHHHCTTCCEEECTTCCCHHHH--HHHHHHHHTST
T ss_pred HHHHhcCCCCceEEECcCCCCC-------H-------HHHHHHHHHHhhCCCcceEECCCCCCchHH--HHHHHHHhccC
Confidence 1233446899999999988532 0 012336666777899999999998764320 22222 2
Q ss_pred cccccEEEEeCCCCCCC----CC-CCCCCCCcceeeccccccceeeCccCCCCCCCCCCCCCCCCCCCCCCCCCCeeecc
Q 037953 350 LNMLKKLRLLNCPTCEI----MP-PLGQLPSLEILLIKDMTSVERVGDESLGIANGDHGAPSSSSVNNIAFPKLKELEFS 424 (625)
Q Consensus 350 l~~L~~L~L~~c~~l~~----l~-~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~ 424 (625)
.++|++|++++|..... ++ .+..+++|+.|++++|. ++..+...+... -....++|++|+++
T Consensus 312 ~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~------------l~~~~~~L~~L~L~ 378 (461)
T 1z7x_W 312 GCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNR-LEDAGVRELCQG------------LGQPGSVLRVLWLA 378 (461)
T ss_dssp TCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSB-CHHHHHHHHHHH------------HTSTTCCCCEEECT
T ss_pred CccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCc-cccccHHHHHHH------------HcCCCCceEEEECC
Confidence 36999999999863322 22 25567999999999985 443321110000 01126799999999
Q ss_pred Cccccc-----ccccCCCCcccCCCccEEEEecCCCCCc---------CCcCCCCCCCCCEEEEecCcc
Q 037953 425 GLQEWE-----DWDFRKEDITIMPQINSLSIYGCHKLKS---------LPDQLLQSSTLKTLRINRCRV 479 (625)
Q Consensus 425 ~~~~l~-----~~~~~~~~~~~l~~L~~L~l~~c~~l~~---------lp~~~~~l~~L~~L~l~~c~~ 479 (625)
+|. +. .++. .+..+++|++|++++|+ ++. +|. ...+|+.|++.++..
T Consensus 379 ~n~-i~~~~~~~l~~---~l~~~~~L~~L~l~~N~-i~~~~~~~l~~~l~~---~~~~L~~L~~~~~~~ 439 (461)
T 1z7x_W 379 DCD-VSDSSCSSLAA---TLLANHSLRELDLSNNC-LGDAGILQLVESVRQ---PGCLLEQLVLYDIYW 439 (461)
T ss_dssp TSC-CCHHHHHHHHH---HHHHCCCCCEEECCSSS-CCHHHHHHHHHHHTS---TTCCCCEEECTTCCC
T ss_pred CCC-CChhhHHHHHH---HHHhCCCccEEECCCCC-CCHHHHHHHHHHhcc---CCcchhheeeccccc
Confidence 884 33 2221 13368999999999974 443 232 245677777776643
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=99.73 E-value=1.2e-19 Score=201.17 Aligned_cols=360 Identities=18% Similarity=0.104 Sum_probs=228.4
Q ss_pred CCceEEEEEEcC-CCCc--chhhhccCCcceEEEeecccCCccccCc-hhhHHHhcCCceeEEEeecCCCccccccchhh
Q 037953 71 PEKLRHLMLVLG-YEAP--SLVSIFNAIKLRSLILFYWIPNLDAMLP-VLKGIFDQLTCLRALRIEGTDNWELEEDQTNE 146 (625)
Q Consensus 71 ~~~lr~L~l~~~-~~~~--~~~~~~~l~~Lr~L~L~~~~~~~~~~lp-~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~ 146 (625)
.+++++|++.++ .+.. ++.....+++|++|++++|. +....+ .+......+++|++|++++|.. .-....
T Consensus 129 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~--i~~~~~~~l~~~~~~~~~L~~L~l~~~~~----~~~~~~ 202 (594)
T 2p1m_B 129 FKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESD--VDDVSGHWLSHFPDTYTSLVSLNISCLAS----EVSFSA 202 (594)
T ss_dssp CTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCE--EECCCGGGGGGSCTTCCCCCEEECTTCCS----CCCHHH
T ss_pred CCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCc--cCCcchHHHHHHhhcCCcCcEEEecccCC----cCCHHH
Confidence 579999999988 3433 45555689999999999986 222222 0114445788999999994420 011233
Q ss_pred hhcccccccccceecC--CC-CCCCchhhcCCCCCceEeecCCCC------CCccccccccccccceE-EecCccccccc
Q 037953 147 ILNGVEKLIHLRYLKL--NL-VGDLPEKCCELLNLQTLELENSSH------FKRFPQGIGKLINLRHL-IFTEDLLEYMP 216 (625)
Q Consensus 147 lp~~~~~L~~L~~L~L--~~-l~~lP~~i~~L~~L~~L~L~~~~~------l~~lp~~l~~L~~L~~L-~l~~~~l~~lp 216 (625)
++..+.++++|++|++ |. +..+|..+.++++|++|+++.+.. +..++..+.++++|+.| .+.......+|
T Consensus 203 l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~ 282 (594)
T 2p1m_B 203 LERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLP 282 (594)
T ss_dssp HHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGG
T ss_pred HHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHH
Confidence 4444566899999999 54 666888899999999999877642 34566678899999999 44444445566
Q ss_pred ccCCCccccccCCceEecCCCCcCCCcccChh-ccccccccccceEEeccCCCCChhHHHHhccCCCCCCCeEEEEEecc
Q 037953 217 KGIEKLTSLRTLSEFVVASGGGRYGSEACKLE-GLRHLNHLRGSLKVRGLGNVADVDEVKNAHLEKKKNLVRLILRFKDI 295 (625)
Q Consensus 217 ~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~l~-~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 295 (625)
..+..+++|++|++..+.... ..+. -+.++++|+ .|.+.++ +. ..........+++|++|++..+.-
T Consensus 283 ~~~~~~~~L~~L~L~~~~l~~-------~~l~~~~~~~~~L~-~L~l~~~--~~--~~~l~~l~~~~~~L~~L~L~~~~~ 350 (594)
T 2p1m_B 283 AVYSVCSRLTTLNLSYATVQS-------YDLVKLLCQCPKLQ-RLWVLDY--IE--DAGLEVLASTCKDLRELRVFPSEP 350 (594)
T ss_dssp GGHHHHTTCCEEECTTCCCCH-------HHHHHHHTTCTTCC-EEEEEGG--GH--HHHHHHHHHHCTTCCEEEEECSCT
T ss_pred HHHHhhCCCCEEEccCCCCCH-------HHHHHHHhcCCCcC-EEeCcCc--cC--HHHHHHHHHhCCCCCEEEEecCcc
Confidence 555678888888876555222 2222 245667777 8888875 11 233333344688999999964210
Q ss_pred cccccCCcccccccchhhHHHHhhcCCCCCCCcEEEEeccCCCcccCCchhhc-ccccccEEEEe-----CCCCCCCCCC
Q 037953 296 DKAVKRWPEAISNENAAKHEAICEALWPPPNLESLEIAGFRGRKMMLSTNWMA-SLNMLKKLRLL-----NCPTCEIMPP 369 (625)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~p~~l~-~l~~L~~L~L~-----~c~~l~~l~~ 369 (625)
.+ ...+..+ ....+......+++|+.|.+..+...... +..+. .+++|+.|+++ +|+.++..|.
T Consensus 351 ~g--~~~~~~l------~~~~l~~l~~~~~~L~~L~~~~~~l~~~~--~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~ 420 (594)
T 2p1m_B 351 FV--MEPNVAL------TEQGLVSVSMGCPKLESVLYFCRQMTNAA--LITIARNRPNMTRFRLCIIEPKAPDYLTLEPL 420 (594)
T ss_dssp TC--SSCSSCC------CHHHHHHHHHHCTTCCEEEEEESCCCHHH--HHHHHHHCTTCCEEEEEESSTTCCCTTTCCCT
T ss_pred cc--cccCCCC------CHHHHHHHHHhchhHHHHHHhcCCcCHHH--HHHHHhhCCCcceeEeecccCCCcccccCCch
Confidence 00 0001111 11222222234789999977666544320 23333 68999999999 5667765542
Q ss_pred -------CCCCCCcceeeccccccceeeCccCCCCCCCCCCCCCCCCCCCCCCCCCCeeeccCcccccccccCCCCcccC
Q 037953 370 -------LGQLPSLEILLIKDMTSVERVGDESLGIANGDHGAPSSSSVNNIAFPKLKELEFSGLQEWEDWDFRKEDITIM 442 (625)
Q Consensus 370 -------l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~l 442 (625)
+..+++|+.|++++ .+....... + ...+++|+.|++++|. +.......- ...+
T Consensus 421 ~~~~~~l~~~~~~L~~L~L~~--~l~~~~~~~--l--------------~~~~~~L~~L~L~~~~-i~~~~~~~l-~~~~ 480 (594)
T 2p1m_B 421 DIGFGAIVEHCKDLRRLSLSG--LLTDKVFEY--I--------------GTYAKKMEMLSVAFAG-DSDLGMHHV-LSGC 480 (594)
T ss_dssp HHHHHHHHHHCTTCCEEECCS--SCCHHHHHH--H--------------HHHCTTCCEEEEESCC-SSHHHHHHH-HHHC
T ss_pred hhHHHHHHhhCCCccEEeecC--cccHHHHHH--H--------------HHhchhccEeeccCCC-CcHHHHHHH-HhcC
Confidence 45688999999976 232211100 0 1237899999999875 222111100 1258
Q ss_pred CCccEEEEecCCCCCc--CCcCCCCCCCCCEEEEecCcc
Q 037953 443 PQINSLSIYGCHKLKS--LPDQLLQSSTLKTLRINRCRV 479 (625)
Q Consensus 443 ~~L~~L~l~~c~~l~~--lp~~~~~l~~L~~L~l~~c~~ 479 (625)
++|++|++++|+. +. ++.....+++|++|++++|+.
T Consensus 481 ~~L~~L~L~~n~~-~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 481 DSLRKLEIRDCPF-GDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp TTCCEEEEESCSC-CHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred CCcCEEECcCCCC-cHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 9999999999875 43 223445589999999999987
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.72 E-value=9.8e-19 Score=177.29 Aligned_cols=69 Identities=16% Similarity=0.064 Sum_probs=38.9
Q ss_pred CCCCCCcEEEEeccCCCcccCCch-hhcccccccEEEEeCCCCCCCC--CCCCCCCCcceeeccccccceeeC
Q 037953 322 WPPPNLESLEIAGFRGRKMMLSTN-WMASLNMLKKLRLLNCPTCEIM--PPLGQLPSLEILLIKDMTSVERVG 391 (625)
Q Consensus 322 ~~~~~L~~L~L~~~~~~~~~~~p~-~l~~l~~L~~L~L~~c~~l~~l--~~l~~l~~L~~L~L~~~~~l~~l~ 391 (625)
..+++|+.|++++|....+...+. .+..+++|+.|++++|...+.. +.+..+++|++|++++|. ++.+|
T Consensus 198 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~-l~~ip 269 (312)
T 1wwl_A 198 LKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTG-LKQVP 269 (312)
T ss_dssp TSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSC-CSSCC
T ss_pred ccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCc-cChhh
Confidence 556677777777666553200022 2236677888888775533333 235556777777777765 33333
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.69 E-value=2.3e-18 Score=185.29 Aligned_cols=129 Identities=17% Similarity=0.154 Sum_probs=86.8
Q ss_pred CCcchhhhccCC----cceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhhhcccccccccce
Q 037953 84 EAPSLVSIFNAI----KLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEILNGVEKLIHLRY 159 (625)
Q Consensus 84 ~~~~~~~~~~l~----~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp~~~~~L~~L~~ 159 (625)
...+|..+..+. +|++|++++|. +....| ..|+.+++|++|+|+ +|.+..+++ ++.+++|++
T Consensus 19 ~~~l~~~l~~l~~~~~~L~~L~Ls~n~--l~~~~~---~~~~~l~~L~~L~Ls--------~N~l~~~~~-l~~l~~L~~ 84 (487)
T 3oja_A 19 DSSLKQALASLRQSAWNVKELDLSGNP--LSQISA---ADLAPFTKLELLNLS--------SNVLYETLD-LESLSTLRT 84 (487)
T ss_dssp TTTHHHHHHTTSTTGGGCCEEECCSSC--CCCCCG---GGGTTCTTCCEEECT--------TSCCEEEEE-CTTCTTCCE
T ss_pred hhhhHHHHHHhcccCCCccEEEeeCCc--CCCCCH---HHHhCCCCCCEEEee--------CCCCCCCcc-cccCCCCCE
Confidence 345555554443 78888888854 455556 677888888888888 777665553 778888888
Q ss_pred ecC-CC-CCCCchhhcCCCCCceEeecCCCCCCccccccccccccceEEecCcccccc-cccCCCccccccCCceEe
Q 037953 160 LKL-NL-VGDLPEKCCELLNLQTLELENSSHFKRFPQGIGKLINLRHLIFTEDLLEYM-PKGIEKLTSLRTLSEFVV 233 (625)
Q Consensus 160 L~L-~~-l~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~l~~L~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~~~~~ 233 (625)
|+| ++ +..+|. .++|++|++++|. +..+|.. .+++|++|++++|.++.+ |..++.+++|+.|++..+
T Consensus 85 L~Ls~N~l~~l~~----~~~L~~L~L~~N~-l~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N 154 (487)
T 3oja_A 85 LDLNNNYVQELLV----GPSIETLHAANNN-ISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLN 154 (487)
T ss_dssp EECCSSEEEEEEE----CTTCCEEECCSSC-CCCEEEC--CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTS
T ss_pred EEecCCcCCCCCC----CCCcCEEECcCCc-CCCCCcc--ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCC
Confidence 888 44 666653 2778888888887 6666543 467788888877777665 335666666666665443
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
Probab=99.67 E-value=1.1e-16 Score=161.82 Aligned_cols=66 Identities=21% Similarity=0.218 Sum_probs=45.9
Q ss_pred CCCCCCCcEEEEeccCCCcccCCchhhcccccccEEEEeCCCCCCCCCCCCCCCCcceeeccccccceeeCc
Q 037953 321 LWPPPNLESLEIAGFRGRKMMLSTNWMASLNMLKKLRLLNCPTCEIMPPLGQLPSLEILLIKDMTSVERVGD 392 (625)
Q Consensus 321 l~~~~~L~~L~L~~~~~~~~~~~p~~l~~l~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~~~~l~~l~~ 392 (625)
+..+++|+.|++++|....+ +. +..+++|+.|++++| .+..++.+..+++|+.|++++|+ +...|.
T Consensus 169 l~~l~~L~~L~l~~n~l~~~---~~-l~~l~~L~~L~L~~N-~l~~~~~l~~l~~L~~L~l~~N~-i~~~~~ 234 (308)
T 1h6u_A 169 LANLSKLTTLKADDNKISDI---SP-LASLPNLIEVHLKNN-QISDVSPLANTSNLFIVTLTNQT-ITNQPV 234 (308)
T ss_dssp GTTCTTCCEEECCSSCCCCC---GG-GGGCTTCCEEECTTS-CCCBCGGGTTCTTCCEEEEEEEE-EECCCE
T ss_pred hcCCCCCCEEECCCCccCcC---hh-hcCCCCCCEEEccCC-ccCccccccCCCCCCEEEccCCe-eecCCe
Confidence 45566777777777766654 43 667788888888875 45555567788888888888876 555443
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.67 E-value=7.4e-17 Score=173.55 Aligned_cols=217 Identities=14% Similarity=0.106 Sum_probs=165.9
Q ss_pred HHHhcCC----ceeEEEeecCCCccccccchhhh-hcccccccccceecC-CC-CCCCchhhcCCCCCceEeecCCCCCC
Q 037953 118 GIFDQLT----CLRALRIEGTDNWELEEDQTNEI-LNGVEKLIHLRYLKL-NL-VGDLPEKCCELLNLQTLELENSSHFK 190 (625)
Q Consensus 118 ~~~~~l~----~Lr~L~Ls~c~~~~~~~~~l~~l-p~~~~~L~~L~~L~L-~~-l~~lP~~i~~L~~L~~L~L~~~~~l~ 190 (625)
..+..+. +|++|+|+ +|.+..+ |..|+.+++|++|+| ++ +..+++ ++.+++|++|+|++|. ++
T Consensus 24 ~~l~~l~~~~~~L~~L~Ls--------~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~-l~ 93 (487)
T 3oja_A 24 QALASLRQSAWNVKELDLS--------GNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNY-VQ 93 (487)
T ss_dssp HHHHTTSTTGGGCCEEECC--------SSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSE-EE
T ss_pred HHHHHhcccCCCccEEEee--------CCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCc-CC
Confidence 5555544 89999999 8887776 467999999999999 44 776664 9999999999999998 88
Q ss_pred ccccccccccccceEEecCcccccccccCCCccccccCCceEecCCCCcCCCcccChhccccccccccceEEeccCCCCC
Q 037953 191 RFPQGIGKLINLRHLIFTEDLLEYMPKGIEKLTSLRTLSEFVVASGGGRYGSEACKLEGLRHLNHLRGSLKVRGLGNVAD 270 (625)
Q Consensus 191 ~lp~~l~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~L~l~~~~~~~~ 270 (625)
.+|. .++|++|++++|.+..+|.. .+++|+.|++..+.... .....+.++++|+ .|.+++. .
T Consensus 94 ~l~~----~~~L~~L~L~~N~l~~~~~~--~l~~L~~L~L~~N~l~~-------~~~~~~~~l~~L~-~L~Ls~N----~ 155 (487)
T 3oja_A 94 ELLV----GPSIETLHAANNNISRVSCS--RGQGKKNIYLANNKITM-------LRDLDEGCRSRVQ-YLDLKLN----E 155 (487)
T ss_dssp EEEE----CTTCCEEECCSSCCCCEEEC--CCSSCEEEECCSSCCCS-------GGGBCGGGGSSEE-EEECTTS----C
T ss_pred CCCC----CCCcCEEECcCCcCCCCCcc--ccCCCCEEECCCCCCCC-------CCchhhcCCCCCC-EEECCCC----C
Confidence 7764 38999999999999888754 46788888877665544 1122344455555 6777663 3
Q ss_pred hhHHHHhccC-CCCCCCeEEEEEecccccccCCcccccccchhhHHHHhhcCCCCCCCcEEEEeccCCCcccCCchhhcc
Q 037953 271 VDEVKNAHLE-KKKNLVRLILRFKDIDKAVKRWPEAISNENAAKHEAICEALWPPPNLESLEIAGFRGRKMMLSTNWMAS 349 (625)
Q Consensus 271 ~~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~p~~l~~ 349 (625)
+.+..+..+. .+++|+.|++++|.++ .+ .....+++|+.|++++|....+ |..+..
T Consensus 156 l~~~~~~~l~~~l~~L~~L~Ls~N~l~-------------------~~-~~~~~l~~L~~L~Ls~N~l~~~---~~~~~~ 212 (487)
T 3oja_A 156 IDTVNFAELAASSDTLEHLNLQYNFIY-------------------DV-KGQVVFAKLKTLDLSSNKLAFM---GPEFQS 212 (487)
T ss_dssp CCEEEGGGGGGGTTTCCEEECTTSCCC-------------------EE-ECCCCCTTCCEEECCSSCCCEE---CGGGGG
T ss_pred CCCcChHHHhhhCCcccEEecCCCccc-------------------cc-cccccCCCCCEEECCCCCCCCC---CHhHcC
Confidence 3333344454 6899999999988643 11 2344689999999999998887 888999
Q ss_pred cccccEEEEeCCCCCCCCC-CCCCCCCcceeecccccc
Q 037953 350 LNMLKKLRLLNCPTCEIMP-PLGQLPSLEILLIKDMTS 386 (625)
Q Consensus 350 l~~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~L~~~~~ 386 (625)
+++|+.|++++|. +..+| .++.+++|+.|++++|+.
T Consensus 213 l~~L~~L~Ls~N~-l~~lp~~l~~l~~L~~L~l~~N~l 249 (487)
T 3oja_A 213 AAGVTWISLRNNK-LVLIEKALRFSQNLEHFDLRGNGF 249 (487)
T ss_dssp GTTCSEEECTTSC-CCEECTTCCCCTTCCEEECTTCCB
T ss_pred CCCccEEEecCCc-CcccchhhccCCCCCEEEcCCCCC
Confidence 9999999999965 55566 488899999999999873
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=1.1e-16 Score=159.10 Aligned_cols=131 Identities=21% Similarity=0.232 Sum_probs=68.2
Q ss_pred CcchhhhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhhhc-ccccccccceecC-
Q 037953 85 APSLVSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEILN-GVEKLIHLRYLKL- 162 (625)
Q Consensus 85 ~~~~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp~-~~~~L~~L~~L~L- 162 (625)
..+|..+. ++|++|++++|. +....+ ..|.++++|++|+++ +|.+..++. .|.++++|++|++
T Consensus 20 ~~ip~~l~--~~l~~L~ls~n~--l~~~~~---~~~~~l~~L~~L~l~--------~n~l~~~~~~~~~~l~~L~~L~L~ 84 (276)
T 2z62_A 20 YKIPDNLP--FSTKNLDLSFNP--LRHLGS---YSFFSFPELQVLDLS--------RCEIQTIEDGAYQSLSHLSTLILT 84 (276)
T ss_dssp SSCCSSSC--TTCCEEECTTCC--CCEECT---TTTTTCTTCSEEECT--------TCCCCEECTTTTTTCTTCCEEECT
T ss_pred cccCCCCC--CCccEEECCCCc--ccccCH---hHhccccCCcEEECC--------CCcCCccCHHHccCCcCCCEEECC
Confidence 34444332 346666666543 233333 345556666666666 555554432 4555666666666
Q ss_pred CC-CCCCc-hhhcCCCCCceEeecCCCCCCcccc-ccccccccceEEecCccccc--ccccCCCccccccCCce
Q 037953 163 NL-VGDLP-EKCCELLNLQTLELENSSHFKRFPQ-GIGKLINLRHLIFTEDLLEY--MPKGIEKLTSLRTLSEF 231 (625)
Q Consensus 163 ~~-l~~lP-~~i~~L~~L~~L~L~~~~~l~~lp~-~l~~L~~L~~L~l~~~~l~~--lp~~i~~L~~L~~L~~~ 231 (625)
.+ +..++ ..+.++++|++|++++|. +..++. .++++++|++|++++|.++. +|..++.+++|++|++.
T Consensus 85 ~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls 157 (276)
T 2z62_A 85 GNPIQSLALGAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS 157 (276)
T ss_dssp TCCCCEECTTTTTTCTTCCEEECTTSC-CCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECC
T ss_pred CCccCccChhhhcCCccccEEECCCCC-ccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECC
Confidence 22 44443 345566666666666665 444443 35556666666665555544 34455555555555443
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
Probab=99.66 E-value=1e-15 Score=148.58 Aligned_cols=212 Identities=14% Similarity=0.120 Sum_probs=126.5
Q ss_pred ceecC-CC-CCCCchhhcCCCCCceEeecCCCCCCcccc-ccccccccceEEecCcc-cccccc-cCCCccccccCCceE
Q 037953 158 RYLKL-NL-VGDLPEKCCELLNLQTLELENSSHFKRFPQ-GIGKLINLRHLIFTEDL-LEYMPK-GIEKLTSLRTLSEFV 232 (625)
Q Consensus 158 ~~L~L-~~-l~~lP~~i~~L~~L~~L~L~~~~~l~~lp~-~l~~L~~L~~L~l~~~~-l~~lp~-~i~~L~~L~~L~~~~ 232 (625)
+.+++ |. ++.+|. +. .+|++|++++|. ++.+|. .++++++|++|+++.|. ++.+|. .++.+++|++|++..
T Consensus 14 ~~~~v~c~~l~~ip~-~~--~~l~~L~l~~n~-l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~ 89 (239)
T 2xwt_C 14 EDFRVTCKDIQRIPS-LP--PSTQTLKLIETH-LRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRN 89 (239)
T ss_dssp STTEEEECSCSSCCC-CC--TTCCEEEEESCC-CSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEE
T ss_pred CcceeEccCccccCC-CC--CcccEEEEeCCc-ceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCC
Confidence 45555 55 777776 43 378888888888 777776 47788888888887664 766664 344555555554432
Q ss_pred -ecCCCCcCCCcccChhccccccccccceEEeccCCCCChhHHHHhccCCCCCCCeEEEEEecccccccCCcccccccch
Q 037953 233 -VASGGGRYGSEACKLEGLRHLNHLRGSLKVRGLGNVADVDEVKNAHLEKKKNLVRLILRFKDIDKAVKRWPEAISNENA 311 (625)
Q Consensus 233 -~~~~~~~~~~~~~~l~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 311 (625)
+.... + .+..+..+++|+.|++++|
T Consensus 90 ~n~l~~------------------i------------------~~~~f~~l~~L~~L~l~~n------------------ 115 (239)
T 2xwt_C 90 TRNLTY------------------I------------------DPDALKELPLLKFLGIFNT------------------ 115 (239)
T ss_dssp ETTCCE------------------E------------------CTTSEECCTTCCEEEEEEE------------------
T ss_pred CCCeeE------------------c------------------CHHHhCCCCCCCEEeCCCC------------------
Confidence 11000 0 0012334445555555555
Q ss_pred hhHHHHhhcCCCCCCCcEEEEeccCCCcccCCchhhccccccc---EEEEeCCCCCCCCCC--CCCCCCcc-eeeccccc
Q 037953 312 AKHEAICEALWPPPNLESLEIAGFRGRKMMLSTNWMASLNMLK---KLRLLNCPTCEIMPP--LGQLPSLE-ILLIKDMT 385 (625)
Q Consensus 312 ~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~p~~l~~l~~L~---~L~L~~c~~l~~l~~--l~~l~~L~-~L~L~~~~ 385 (625)
....+ |. +..+++|+ .|++++|..++.++. +..+++|+ .|++++|.
T Consensus 116 ------------------------~l~~l---p~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~ 167 (239)
T 2xwt_C 116 ------------------------GLKMF---PD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNG 167 (239)
T ss_dssp ------------------------CCCSC---CC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCC
T ss_pred ------------------------CCccc---cc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCC
Confidence 33333 43 44444554 666666545555542 66677777 77777654
Q ss_pred cceeeCccCCCCCCCCCCCCCCCCCCCCCCCCCCeeeccCcccccccccCCCCcccC-CCccEEEEecCCCCCcCCcCCC
Q 037953 386 SVERVGDESLGIANGDHGAPSSSSVNNIAFPKLKELEFSGLQEWEDWDFRKEDITIM-PQINSLSIYGCHKLKSLPDQLL 464 (625)
Q Consensus 386 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~l-~~L~~L~l~~c~~l~~lp~~~~ 464 (625)
++.+|... ... ++|+.|+++++..++.++... +..+ ++|+.|++++ +.++.+|..
T Consensus 168 -l~~i~~~~-----------------~~~-~~L~~L~L~~n~~l~~i~~~~--~~~l~~~L~~L~l~~-N~l~~l~~~-- 223 (239)
T 2xwt_C 168 -FTSVQGYA-----------------FNG-TKLDAVYLNKNKYLTVIDKDA--FGGVYSGPSLLDVSQ-TSVTALPSK-- 223 (239)
T ss_dssp -CCEECTTT-----------------TTT-CEEEEEECTTCTTCCEECTTT--TTTCSBCCSEEECTT-CCCCCCCCT--
T ss_pred -CcccCHhh-----------------cCC-CCCCEEEcCCCCCcccCCHHH--hhccccCCcEEECCC-CccccCChh--
Confidence 55665432 122 577777777765455443221 3356 8888888888 467788776
Q ss_pred CCCCCCEEEEecCcc
Q 037953 465 QSSTLKTLRINRCRV 479 (625)
Q Consensus 465 ~l~~L~~L~l~~c~~ 479 (625)
.+++|+.|++.++..
T Consensus 224 ~~~~L~~L~l~~~~~ 238 (239)
T 2xwt_C 224 GLEHLKELIARNTWT 238 (239)
T ss_dssp TCTTCSEEECTTC--
T ss_pred HhccCceeeccCccC
Confidence 578888888888754
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
Probab=99.65 E-value=5.7e-16 Score=156.45 Aligned_cols=188 Identities=19% Similarity=0.180 Sum_probs=154.7
Q ss_pred CCceEEEEEEcCCCCcchhhhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhhhcc
Q 037953 71 PEKLRHLMLVLGYEAPSLVSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEILNG 150 (625)
Q Consensus 71 ~~~lr~L~l~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp~~ 150 (625)
.+++++|++.++.+..++ .+..+++|++|++++|. ...++ . +..+++|++|+++ +|.+..+| .
T Consensus 40 l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~---i~~~~---~-~~~l~~L~~L~L~--------~n~l~~~~-~ 102 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQ---ITDLA---P-LKNLTKITELELS--------GNPLKNVS-A 102 (308)
T ss_dssp HHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSC---CCCCG---G-GTTCCSCCEEECC--------SCCCSCCG-G
T ss_pred cCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCc---CCCCh---h-HccCCCCCEEEcc--------CCcCCCch-h
Confidence 468999999999988876 67899999999999986 44455 5 8999999999999 88888876 6
Q ss_pred cccccccceecC-CC-CCCCchhhcCCCCCceEeecCCCCCCccccccccccccceEEecCcccccccccCCCccccccC
Q 037953 151 VEKLIHLRYLKL-NL-VGDLPEKCCELLNLQTLELENSSHFKRFPQGIGKLINLRHLIFTEDLLEYMPKGIEKLTSLRTL 228 (625)
Q Consensus 151 ~~~L~~L~~L~L-~~-l~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~l~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L 228 (625)
+..+++|++|++ .+ +..+|. +..+++|++|++++|. +..+|. ++++++|++|+++.|.++.+|. +..+++|+.|
T Consensus 103 ~~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L 178 (308)
T 1h6u_A 103 IAGLQSIKTLDLTSTQITDVTP-LAGLSNLQVLYLDLNQ-ITNISP-LAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTL 178 (308)
T ss_dssp GTTCTTCCEEECTTSCCCCCGG-GTTCTTCCEEECCSSC-CCCCGG-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEE
T ss_pred hcCCCCCCEEECCCCCCCCchh-hcCCCCCCEEECCCCc-cCcCcc-ccCCCCccEEEccCCcCCCChh-hcCCCCCCEE
Confidence 999999999999 44 888875 9999999999999998 888876 9999999999999899998876 8888999998
Q ss_pred CceEecCCCCcCCCcccChhccccccccccceEEeccCCCCChhHHHHhccCCCCCCCeEEEEEecc
Q 037953 229 SEFVVASGGGRYGSEACKLEGLRHLNHLRGSLKVRGLGNVADVDEVKNAHLEKKKNLVRLILRFKDI 295 (625)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 295 (625)
++..+.... +..+..+++|+ .|.++++.- ... . .+..+++|+.|++++|.+
T Consensus 179 ~l~~n~l~~---------~~~l~~l~~L~-~L~L~~N~l-~~~---~--~l~~l~~L~~L~l~~N~i 229 (308)
T 1h6u_A 179 KADDNKISD---------ISPLASLPNLI-EVHLKNNQI-SDV---S--PLANTSNLFIVTLTNQTI 229 (308)
T ss_dssp ECCSSCCCC---------CGGGGGCTTCC-EEECTTSCC-CBC---G--GGTTCTTCCEEEEEEEEE
T ss_pred ECCCCccCc---------ChhhcCCCCCC-EEEccCCcc-Ccc---c--cccCCCCCCEEEccCCee
Confidence 877665443 22256667777 788876432 221 1 378899999999999963
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=99.64 E-value=3.4e-17 Score=167.72 Aligned_cols=89 Identities=19% Similarity=0.206 Sum_probs=50.7
Q ss_pred hhcCCCCC-CCcEEEEeccC--C--CcccCCchhhcccccccEEEEeCCCCCCC--CCCCCCCCCcceeeccccccceee
Q 037953 318 CEALWPPP-NLESLEIAGFR--G--RKMMLSTNWMASLNMLKKLRLLNCPTCEI--MPPLGQLPSLEILLIKDMTSVERV 390 (625)
Q Consensus 318 ~~~l~~~~-~L~~L~L~~~~--~--~~~~~~p~~l~~l~~L~~L~L~~c~~l~~--l~~l~~l~~L~~L~L~~~~~l~~l 390 (625)
+..+..++ +|++|++++|. . ..+ |..+..+++|+.|++++|..++. ++.++.+++|+.|++++|..+.
T Consensus 187 ~~~~~~l~~~L~~L~l~~~~~~~~~~~l---~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~-- 261 (336)
T 2ast_B 187 QVAVAHVSETITQLNLSGYRKNLQKSDL---STLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDII-- 261 (336)
T ss_dssp HHHHHHSCTTCCEEECCSCGGGSCHHHH---HHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCC--
T ss_pred HHHHHhcccCCCEEEeCCCcccCCHHHH---HHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCC--
Confidence 33344455 66666666653 1 223 55556677777777777664432 3346667777777777775221
Q ss_pred CccCCCCCCCCCCCCCCCCCCCCCCCCCCeeeccCc
Q 037953 391 GDESLGIANGDHGAPSSSSVNNIAFPKLKELEFSGL 426 (625)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~ 426 (625)
+..+.. +..+++|+.|++++|
T Consensus 262 ~~~~~~---------------l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 262 PETLLE---------------LGEIPTLKTLQVFGI 282 (336)
T ss_dssp GGGGGG---------------GGGCTTCCEEECTTS
T ss_pred HHHHHH---------------HhcCCCCCEEeccCc
Confidence 111100 445677777777766
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
Probab=99.62 E-value=2.8e-17 Score=171.82 Aligned_cols=146 Identities=17% Similarity=0.182 Sum_probs=86.8
Q ss_pred CCcchhhhccCCcceEEEeecccCCccccCc-hhhHHHhcCCceeEEEeecCCCcccccc---chhhhhcccccccccce
Q 037953 84 EAPSLVSIFNAIKLRSLILFYWIPNLDAMLP-VLKGIFDQLTCLRALRIEGTDNWELEED---QTNEILNGVEKLIHLRY 159 (625)
Q Consensus 84 ~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~lp-~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~---~l~~lp~~~~~L~~L~~ 159 (625)
...++..+..+++|++|++++|. +....+ .+...+..+++|++|+|++|..-...+. .+..+...+.++++|++
T Consensus 21 ~~~l~~~l~~~~~L~~L~L~~n~--i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~ 98 (386)
T 2ca6_A 21 EKSVFAVLLEDDSVKEIVLSGNT--IGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHT 98 (386)
T ss_dssp HHTTSHHHHHCSCCCEEECTTSE--ECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCE
T ss_pred HHHHHHHHhcCCCccEEECCCCC--CCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccE
Confidence 35566777788888999988875 222211 0113466788889998884321000000 11222333467888888
Q ss_pred ecC--CCCCC-----CchhhcCCCCCceEeecCCCCCCc-----cccccccc---------cccceEEecCcccc--ccc
Q 037953 160 LKL--NLVGD-----LPEKCCELLNLQTLELENSSHFKR-----FPQGIGKL---------INLRHLIFTEDLLE--YMP 216 (625)
Q Consensus 160 L~L--~~l~~-----lP~~i~~L~~L~~L~L~~~~~l~~-----lp~~l~~L---------~~L~~L~l~~~~l~--~lp 216 (625)
|+| |.+.. +|..+.++++|++|+|++|. ++. ++..+..+ ++|++|++++|.++ .+|
T Consensus 99 L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~ 177 (386)
T 2ca6_A 99 VRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNG-LGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMK 177 (386)
T ss_dssp EECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSC-CHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHH
T ss_pred EECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCC-CCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHH
Confidence 888 33554 67778888888888888887 542 23334444 78888888777664 333
Q ss_pred ---ccCCCccccccCCceE
Q 037953 217 ---KGIEKLTSLRTLSEFV 232 (625)
Q Consensus 217 ---~~i~~L~~L~~L~~~~ 232 (625)
..+..+++|++|++..
T Consensus 178 ~l~~~l~~~~~L~~L~L~~ 196 (386)
T 2ca6_A 178 EWAKTFQSHRLLHTVKMVQ 196 (386)
T ss_dssp HHHHHHHHCTTCCEEECCS
T ss_pred HHHHHHHhCCCcCEEECcC
Confidence 2344455555555443
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=3.9e-16 Score=155.14 Aligned_cols=198 Identities=16% Similarity=0.172 Sum_probs=150.7
Q ss_pred CCCceEEEEEEcCCCCcchh-hhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhhh
Q 037953 70 CPEKLRHLMLVLGYEAPSLV-SIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEIL 148 (625)
Q Consensus 70 ~~~~lr~L~l~~~~~~~~~~-~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp 148 (625)
.+.++++|++++|.+..++. .+.++++|++|++++|. +....+ ..|.++++|++|+|+ +|.+..++
T Consensus 26 l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~--l~~~~~---~~~~~l~~L~~L~L~--------~n~l~~~~ 92 (276)
T 2z62_A 26 LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE--IQTIED---GAYQSLSHLSTLILT--------GNPIQSLA 92 (276)
T ss_dssp SCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCC--CCEECT---TTTTTCTTCCEEECT--------TCCCCEEC
T ss_pred CCCCccEEECCCCcccccCHhHhccccCCcEEECCCCc--CCccCH---HHccCCcCCCEEECC--------CCccCccC
Confidence 46789999999999987765 78899999999999975 445555 679999999999999 88887775
Q ss_pred -cccccccccceecC-C-CCCCCch-hhcCCCCCceEeecCCCCCCc--cccccccccccceEEecCcccccccc-cCCC
Q 037953 149 -NGVEKLIHLRYLKL-N-LVGDLPE-KCCELLNLQTLELENSSHFKR--FPQGIGKLINLRHLIFTEDLLEYMPK-GIEK 221 (625)
Q Consensus 149 -~~~~~L~~L~~L~L-~-~l~~lP~-~i~~L~~L~~L~L~~~~~l~~--lp~~l~~L~~L~~L~l~~~~l~~lp~-~i~~ 221 (625)
..|.++++|++|++ . .+..++. .++++++|++|++++|. ++. +|..++++++|++|++++|.++.+|. .+..
T Consensus 93 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 171 (276)
T 2z62_A 93 LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRV 171 (276)
T ss_dssp TTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHH
T ss_pred hhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCc-cceecCchhhccCCCCCEEECCCCCCCcCCHHHhhh
Confidence 56999999999999 4 4777765 69999999999999998 776 68899999999999999998888764 5777
Q ss_pred ccccccCC----ceEecCCCCcCCCcccChhccccccccccceEEeccCCCCChhHHHHhccCCCCCCCeEEEEEec
Q 037953 222 LTSLRTLS----EFVVASGGGRYGSEACKLEGLRHLNHLRGSLKVRGLGNVADVDEVKNAHLEKKKNLVRLILRFKD 294 (625)
Q Consensus 222 L~~L~~L~----~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 294 (625)
+.+|+.|. +..+.... .+.... ...+|+ .|.+++.. +.......+..+++|+.|++++|.
T Consensus 172 l~~L~~l~l~L~ls~n~l~~-----~~~~~~---~~~~L~-~L~L~~n~----l~~~~~~~~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 172 LHQMPLLNLSLDLSLNPMNF-----IQPGAF---KEIRLK-ELALDTNQ----LKSVPDGIFDRLTSLQKIWLHTNP 235 (276)
T ss_dssp HHTCTTCCEEEECCSSCCCE-----ECTTSS---CSCCEE-EEECCSSC----CSCCCTTTTTTCCSCCEEECCSSC
T ss_pred hhhccccceeeecCCCcccc-----cCcccc---CCCccc-EEECCCCc----eeecCHhHhcccccccEEEccCCc
Confidence 77777544 33222221 111111 122455 67776533 222223456789999999999885
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.62 E-value=3.8e-16 Score=154.71 Aligned_cols=194 Identities=23% Similarity=0.275 Sum_probs=130.9
Q ss_pred ceEEEEEEcCCCCcchhhhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhhhcc-c
Q 037953 73 KLRHLMLVLGYEAPSLVSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEILNG-V 151 (625)
Q Consensus 73 ~lr~L~l~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp~~-~ 151 (625)
+.+.++++++.+..+|..+. +++++|++++|. +....+ ..|.++++|++|+++ +|.+..+|.. |
T Consensus 17 ~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~--l~~~~~---~~~~~l~~L~~L~l~--------~n~l~~i~~~~~ 81 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNK--LSSLPS---KAFHRLTKLRLLYLN--------DNKLQTLPAGIF 81 (270)
T ss_dssp TTTEEECTTSCCSSCCSCCC--TTCSEEECCSSC--CSCCCT---TSSSSCTTCCEEECC--------SSCCSCCCTTTT
T ss_pred CCCEEEccCCCCCccCCCCC--CCCCEEECcCCC--CCeeCH---HHhcCCCCCCEEECC--------CCccCeeChhhh
Confidence 45667777777777776553 678888888865 344444 567788888888888 7777777654 5
Q ss_pred ccccccceecC-CC-CCCCchh-hcCCCCCceEeecCCCCCCccccc-cccccccceEEecCccccccccc-CCCccccc
Q 037953 152 EKLIHLRYLKL-NL-VGDLPEK-CCELLNLQTLELENSSHFKRFPQG-IGKLINLRHLIFTEDLLEYMPKG-IEKLTSLR 226 (625)
Q Consensus 152 ~~L~~L~~L~L-~~-l~~lP~~-i~~L~~L~~L~L~~~~~l~~lp~~-l~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~ 226 (625)
.++++|++|++ .+ +..+|.. +.++++|++|++++|. +..+|.. ++.+++|++|+++.|.++.+|.. ++.+++|+
T Consensus 82 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 160 (270)
T 2o6q_A 82 KELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQ-LKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLK 160 (270)
T ss_dssp SSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred cCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCc-cCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccc
Confidence 77888888888 33 7777643 5778888888888887 6666544 67788888888877777777765 67777777
Q ss_pred cCCceEecCCCCcCCCcccChhccccccccccceEEeccCCCCChhHHHHhccCCCCCCCeEEEEEec
Q 037953 227 TLSEFVVASGGGRYGSEACKLEGLRHLNHLRGSLKVRGLGNVADVDEVKNAHLEKKKNLVRLILRFKD 294 (625)
Q Consensus 227 ~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 294 (625)
.|++..+.... .....+.++++|+ .|.+++.. +.......+..+++|+.|++++|.
T Consensus 161 ~L~L~~n~l~~-------~~~~~~~~l~~L~-~L~L~~N~----l~~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 161 ELRLYNNQLKR-------VPEGAFDKLTELK-TLKLDNNQ----LKRVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp EEECCSSCCSC-------CCTTTTTTCTTCC-EEECCSSC----CSCCCTTTTTTCTTCCEEECCSSC
T ss_pred eeEecCCcCcE-------eChhHhccCCCcC-EEECCCCc----CCcCCHHHhccccCCCEEEecCCC
Confidence 77766554333 1112344455555 66666532 112222346778899999999885
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
Probab=99.62 E-value=3.6e-15 Score=153.57 Aligned_cols=62 Identities=16% Similarity=0.068 Sum_probs=42.9
Q ss_pred CCcEEEEeccCCCcccCCchhhcccccccEEEEeCCCCCCCCCC--CCCCCCcceeeccccccceeeC
Q 037953 326 NLESLEIAGFRGRKMMLSTNWMASLNMLKKLRLLNCPTCEIMPP--LGQLPSLEILLIKDMTSVERVG 391 (625)
Q Consensus 326 ~L~~L~L~~~~~~~~~~~p~~l~~l~~L~~L~L~~c~~l~~l~~--l~~l~~L~~L~L~~~~~l~~l~ 391 (625)
.++.|++++|....+ |.......+|+.|.+.+++.++.+|. ++.+++|+.|++++|. ++.+|
T Consensus 155 ~l~~L~L~~N~i~~i---~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~-l~~lp 218 (350)
T 4ay9_X 155 ESVILWLNKNGIQEI---HNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTR-IHSLP 218 (350)
T ss_dssp SCEEEECCSSCCCEE---CTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSC-CCCCC
T ss_pred hhhhhccccccccCC---ChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCC-cCccC
Confidence 466677777766666 66555667778888877777777773 6777777788777764 55554
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
Probab=99.61 E-value=6.8e-16 Score=154.37 Aligned_cols=122 Identities=19% Similarity=0.122 Sum_probs=82.7
Q ss_pred hccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhh-hcccccccccceecC-CC-CCC
Q 037953 91 IFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEI-LNGVEKLIHLRYLKL-NL-VGD 167 (625)
Q Consensus 91 ~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~l-p~~~~~L~~L~~L~L-~~-l~~ 167 (625)
+.+++++++++++++. ...+| ..+ .+++++|+|+ +|.+..+ |..|..+++|++|+| ++ +..
T Consensus 6 ~~~l~~l~~l~~~~~~---l~~ip---~~~--~~~l~~L~L~--------~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 69 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRN---LTALP---PDL--PKDTTILHLS--------ENLLYTFSLATLMPYTRLTQLNLDRAELTK 69 (290)
T ss_dssp EECSTTCCEEECTTSC---CSSCC---SCC--CTTCCEEECT--------TSCCSEEEGGGGTTCTTCCEEECTTSCCCE
T ss_pred ccccCCccEEECCCCC---CCcCC---CCC--CCCCCEEEcC--------CCcCCccCHHHhhcCCCCCEEECCCCccCc
Confidence 4567778888887754 23344 222 2677888888 7776655 455777888888888 43 777
Q ss_pred CchhhcCCCCCceEeecCCCCCCccccccccccccceEEecCcccccccc-cCCCccccccCCc
Q 037953 168 LPEKCCELLNLQTLELENSSHFKRFPQGIGKLINLRHLIFTEDLLEYMPK-GIEKLTSLRTLSE 230 (625)
Q Consensus 168 lP~~i~~L~~L~~L~L~~~~~l~~lp~~l~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~~ 230 (625)
+|.. +.+++|++|++++|. ++.+|..+..+++|++|++++|.++.+|. .++.+++|+.|++
T Consensus 70 ~~~~-~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L 131 (290)
T 1p9a_G 70 LQVD-GTLPVLGTLDLSHNQ-LQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYL 131 (290)
T ss_dssp EECC-SCCTTCCEEECCSSC-CSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEEC
T ss_pred ccCC-CCCCcCCEEECCCCc-CCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEEC
Confidence 7654 777778888888877 77777777777788888887777776663 3555555555544
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
Probab=99.60 E-value=1.2e-15 Score=151.25 Aligned_cols=65 Identities=14% Similarity=0.039 Sum_probs=46.2
Q ss_pred CCCCCCCcEEEEeccCCCcccCCchhhcccccccEEEEeCCCCCCCCCCCCCCCCcceeeccccccceeeCcc
Q 037953 321 LWPPPNLESLEIAGFRGRKMMLSTNWMASLNMLKKLRLLNCPTCEIMPPLGQLPSLEILLIKDMTSVERVGDE 393 (625)
Q Consensus 321 l~~~~~L~~L~L~~~~~~~~~~~p~~l~~l~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~~~~l~~l~~~ 393 (625)
+..+++|+.|++++|...... |..+..+++|+.|++++|.. .+.+++|+.|+++.+...+.+|..
T Consensus 177 ~~~l~~L~~L~L~~N~l~~~~--~~~~~~l~~L~~L~l~~N~~------~~~~~~l~~l~~~~n~~~g~ip~~ 241 (272)
T 3rfs_A 177 FDKLTQLKDLRLYQNQLKSVP--DGVFDRLTSLQYIWLHDNPW------DCTCPGIRYLSEWINKHSGVVRNS 241 (272)
T ss_dssp TTTCTTCCEEECCSSCCSCCC--TTTTTTCTTCCEEECCSSCB------CCCTTTTHHHHHHHHHTGGGBBCT
T ss_pred hcCCccCCEEECCCCcCCccC--HHHHhCCcCCCEEEccCCCc------cccCcHHHHHHHHHHhCCCcccCc
Confidence 455667777777777666651 44567889999999988743 355778888888887766666654
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
Probab=99.60 E-value=8.9e-16 Score=153.54 Aligned_cols=194 Identities=16% Similarity=0.062 Sum_probs=144.9
Q ss_pred CCceEEEEEEcCCCCcchhhhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhhhcc
Q 037953 71 PEKLRHLMLVLGYEAPSLVSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEILNG 150 (625)
Q Consensus 71 ~~~lr~L~l~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp~~ 150 (625)
..+++.+++.++.+..+|..+. +++++|++++|. +....| ..|.++++|++|+|+ +|.+..+|..
T Consensus 9 l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~--l~~~~~---~~~~~l~~L~~L~L~--------~n~l~~~~~~ 73 (290)
T 1p9a_G 9 VASHLEVNCDKRNLTALPPDLP--KDTTILHLSENL--LYTFSL---ATLMPYTRLTQLNLD--------RAELTKLQVD 73 (290)
T ss_dssp STTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSC--CSEEEG---GGGTTCTTCCEEECT--------TSCCCEEECC
T ss_pred cCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCc--CCccCH---HHhhcCCCCCEEECC--------CCccCcccCC
Confidence 4567888888888888887664 788999999865 455556 778899999999999 8888877653
Q ss_pred cccccccceecC-CC-CCCCchhhcCCCCCceEeecCCCCCCcccc-ccccccccceEEecCccccccccc-CCCccccc
Q 037953 151 VEKLIHLRYLKL-NL-VGDLPEKCCELLNLQTLELENSSHFKRFPQ-GIGKLINLRHLIFTEDLLEYMPKG-IEKLTSLR 226 (625)
Q Consensus 151 ~~~L~~L~~L~L-~~-l~~lP~~i~~L~~L~~L~L~~~~~l~~lp~-~l~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~ 226 (625)
+.+++|++|++ ++ +..+|..+..+++|++|++++|. ++.+|. .+.++++|++|++++|.++.+|.+ +..+++|+
T Consensus 74 -~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 151 (290)
T 1p9a_G 74 -GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNR-LTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 151 (290)
T ss_dssp -SCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSC-CCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred -CCCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCCc-CcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCC
Confidence 78889999999 44 88898888899999999999998 887774 488899999999988888888766 56788888
Q ss_pred cCCceEecCCCCcCCCcccChhccccccccccceEEeccCCCCChhHHHHhccCCCCCCCeEEEEEec
Q 037953 227 TLSEFVVASGGGRYGSEACKLEGLRHLNHLRGSLKVRGLGNVADVDEVKNAHLEKKKNLVRLILRFKD 294 (625)
Q Consensus 227 ~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 294 (625)
.|++..+.... .+ .+.+..+++|+ .|.+++..- . .++..+....+|+.+++++|.
T Consensus 152 ~L~L~~N~l~~-----l~--~~~~~~l~~L~-~L~L~~N~l-~----~ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 152 KLSLANNNLTE-----LP--AGLLNGLENLD-TLLLQENSL-Y----TIPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp EEECTTSCCSC-----CC--TTTTTTCTTCC-EEECCSSCC-C----CCCTTTTTTCCCSEEECCSCC
T ss_pred EEECCCCcCCc-----cC--HHHhcCcCCCC-EEECCCCcC-C----ccChhhcccccCCeEEeCCCC
Confidence 88776555433 11 12234455555 666655321 1 233456667789999999885
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
Probab=99.60 E-value=7.8e-16 Score=152.59 Aligned_cols=101 Identities=32% Similarity=0.508 Sum_probs=48.5
Q ss_pred HhcCCceeEEEeecCCCccccccchhhhhcccccccccceecC-CC-CCCCchh-hcCCCCCceEeecCCCCCCccccc-
Q 037953 120 FDQLTCLRALRIEGTDNWELEEDQTNEILNGVEKLIHLRYLKL-NL-VGDLPEK-CCELLNLQTLELENSSHFKRFPQG- 195 (625)
Q Consensus 120 ~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp~~~~~L~~L~~L~L-~~-l~~lP~~-i~~L~~L~~L~L~~~~~l~~lp~~- 195 (625)
++.+++|++|+++ +|.+..++ .++++++|++|++ ++ +..+|.. ++++++|++|++++|. +..+|..
T Consensus 59 l~~l~~L~~L~l~--------~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~ 128 (272)
T 3rfs_A 59 IQYLPNVRYLALG--------GNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQ-LQSLPDGV 128 (272)
T ss_dssp GGGCTTCCEEECT--------TSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTT
T ss_pred cccCCCCcEEECC--------CCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCc-CCccCHHH
Confidence 4455555555555 44444433 4555555555555 22 4444332 3455555555555555 4444433
Q ss_pred cccccccceEEecCccccccccc-CCCccccccCCc
Q 037953 196 IGKLINLRHLIFTEDLLEYMPKG-IEKLTSLRTLSE 230 (625)
Q Consensus 196 l~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~~ 230 (625)
++++++|++|++++|.++.+|.. ++.+++|+.|++
T Consensus 129 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 164 (272)
T 3rfs_A 129 FDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDL 164 (272)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred hccCCCCCEEECCCCccCccCHHHhccCccCCEEEC
Confidence 45555555555544445444433 344444444443
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=99.60 E-value=7.6e-17 Score=165.13 Aligned_cols=145 Identities=11% Similarity=0.001 Sum_probs=101.5
Q ss_pred CceEEEEEEcCCCCcchhhhccC--CcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhh--h
Q 037953 72 EKLRHLMLVLGYEAPSLVSIFNA--IKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNE--I 147 (625)
Q Consensus 72 ~~lr~L~l~~~~~~~~~~~~~~l--~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~--l 147 (625)
...+++++.++.+. +..+..+ ++++.|++++|. +.+..+ . +.++++|++|+++ +|.+.. +
T Consensus 47 ~~~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~--l~~~~~---~-~~~~~~L~~L~L~--------~~~l~~~~~ 110 (336)
T 2ast_B 47 SLWQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSF--MDQPLA---E-HFSPFRVQHMDLS--------NSVIEVSTL 110 (336)
T ss_dssp TTSSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCE--ECSCCC---S-CCCCBCCCEEECT--------TCEECHHHH
T ss_pred hhheeeccccccCC--HHHHHhhhhccceEEEcCCcc--ccccch---h-hccCCCCCEEEcc--------CCCcCHHHH
Confidence 34677777776654 4555666 888888888864 344444 3 5678889999998 776542 7
Q ss_pred hcccccccccceecC--CCCC-CCchhhcCCCCCceEeecCCCCCC--ccccccccccccceEEecCc-cccc--ccccC
Q 037953 148 LNGVEKLIHLRYLKL--NLVG-DLPEKCCELLNLQTLELENSSHFK--RFPQGIGKLINLRHLIFTED-LLEY--MPKGI 219 (625)
Q Consensus 148 p~~~~~L~~L~~L~L--~~l~-~lP~~i~~L~~L~~L~L~~~~~l~--~lp~~l~~L~~L~~L~l~~~-~l~~--lp~~i 219 (625)
|..+..+++|++|++ |.+. ..|..++++++|++|++++|..++ .+|..+.++++|++|+++++ .++. +|..+
T Consensus 111 ~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 190 (336)
T 2ast_B 111 HGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAV 190 (336)
T ss_dssp HHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHH
T ss_pred HHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHH
Confidence 777888888888888 4443 567778888888888888884466 36766888888888888655 6653 44445
Q ss_pred CCcc-ccccCCceE
Q 037953 220 EKLT-SLRTLSEFV 232 (625)
Q Consensus 220 ~~L~-~L~~L~~~~ 232 (625)
..++ +|++|++..
T Consensus 191 ~~l~~~L~~L~l~~ 204 (336)
T 2ast_B 191 AHVSETITQLNLSG 204 (336)
T ss_dssp HHSCTTCCEEECCS
T ss_pred HhcccCCCEEEeCC
Confidence 5566 666665543
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
Probab=99.58 E-value=1.6e-16 Score=166.01 Aligned_cols=245 Identities=16% Similarity=0.166 Sum_probs=172.1
Q ss_pred cccCchhhHHHhcCCceeEEEeecCCCccccccchhh-----hhcccccccccceecC--CCCC----CCchhh------
Q 037953 110 DAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNE-----ILNGVEKLIHLRYLKL--NLVG----DLPEKC------ 172 (625)
Q Consensus 110 ~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~-----lp~~~~~L~~L~~L~L--~~l~----~lP~~i------ 172 (625)
...++ ..+..+++|++|+|+ +|.+.. ++..+.++++|++|+| |.+. .+|..+
T Consensus 21 ~~~l~---~~l~~~~~L~~L~L~--------~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~ 89 (386)
T 2ca6_A 21 EKSVF---AVLLEDDSVKEIVLS--------GNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQA 89 (386)
T ss_dssp HHTTS---HHHHHCSCCCEEECT--------TSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHH
T ss_pred HHHHH---HHHhcCCCccEEECC--------CCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHH
Confidence 34455 788999999999999 776543 4556889999999999 4344 446555
Q ss_pred -cCCCCCceEeecCCCCCCc-----cccccccccccceEEecCccccc-----ccccCCCc---------cccccCCceE
Q 037953 173 -CELLNLQTLELENSSHFKR-----FPQGIGKLINLRHLIFTEDLLEY-----MPKGIEKL---------TSLRTLSEFV 232 (625)
Q Consensus 173 -~~L~~L~~L~L~~~~~l~~-----lp~~l~~L~~L~~L~l~~~~l~~-----lp~~i~~L---------~~L~~L~~~~ 232 (625)
.++++|++|+|++|. ++. +|..+.++++|++|++++|.++. ++..+..+ ++|++|++..
T Consensus 90 l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~ 168 (386)
T 2ca6_A 90 LLKCPKLHTVRLSDNA-FGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGR 168 (386)
T ss_dssp HTTCTTCCEEECCSCC-CCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCS
T ss_pred HhhCCcccEEECCCCc-CCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCC
Confidence 799999999999998 765 78889999999999998887753 23334344 7888888766
Q ss_pred ecCCCCcCCCcccChhccccccccccceEEeccCCCCC--hhHHHHhccCCCCCCCeEEEEEecccccccCCcccccccc
Q 037953 233 VASGGGRYGSEACKLEGLRHLNHLRGSLKVRGLGNVAD--VDEVKNAHLEKKKNLVRLILRFKDIDKAVKRWPEAISNEN 310 (625)
Q Consensus 233 ~~~~~~~~~~~~~~l~~l~~L~~L~~~L~l~~~~~~~~--~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 310 (625)
+..... ..+.....+..+++|+ .|.+.++.- .. .....+..+..+++|+.|++++|.++
T Consensus 169 n~l~~~---~~~~l~~~l~~~~~L~-~L~L~~n~l-~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~-------------- 229 (386)
T 2ca6_A 169 NRLENG---SMKEWAKTFQSHRLLH-TVKMVQNGI-RPEGIEHLLLEGLAYCQELKVLDLQDNTFT-------------- 229 (386)
T ss_dssp SCCTGG---GHHHHHHHHHHCTTCC-EEECCSSCC-CHHHHHHHHHTTGGGCTTCCEEECCSSCCH--------------
T ss_pred CCCCcH---HHHHHHHHHHhCCCcC-EEECcCCCC-CHhHHHHHHHHHhhcCCCccEEECcCCCCC--------------
Confidence 554320 0111113455666777 788877532 21 11133337888999999999988532
Q ss_pred hhhHHHHhhcCCCCCCCcEEEEeccCCCcc--cCCchhhc--ccccccEEEEeCCCCCC----CCCC-C-CCCCCcceee
Q 037953 311 AAKHEAICEALWPPPNLESLEIAGFRGRKM--MLSTNWMA--SLNMLKKLRLLNCPTCE----IMPP-L-GQLPSLEILL 380 (625)
Q Consensus 311 ~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~--~~~p~~l~--~l~~L~~L~L~~c~~l~----~l~~-l-~~l~~L~~L~ 380 (625)
......++..+..+++|+.|+|++|..... ..+|.++. .+++|+.|+|++|.... .+|. + .++++|++|+
T Consensus 230 ~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~ 309 (386)
T 2ca6_A 230 HLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLE 309 (386)
T ss_dssp HHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEE
T ss_pred cHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEE
Confidence 001255677888899999999999986542 00045553 38999999999976443 2553 4 5689999999
Q ss_pred ccccc
Q 037953 381 IKDMT 385 (625)
Q Consensus 381 L~~~~ 385 (625)
+++|+
T Consensus 310 l~~N~ 314 (386)
T 2ca6_A 310 LNGNR 314 (386)
T ss_dssp CTTSB
T ss_pred ccCCc
Confidence 99987
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.58 E-value=3.6e-15 Score=147.65 Aligned_cols=117 Identities=25% Similarity=0.350 Sum_probs=63.7
Q ss_pred cceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhhhc-ccccccccceecC-CC-CCCCchhh
Q 037953 96 KLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEILN-GVEKLIHLRYLKL-NL-VGDLPEKC 172 (625)
Q Consensus 96 ~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp~-~~~~L~~L~~L~L-~~-l~~lP~~i 172 (625)
..++++++++. ...+| ..+ .++|++|+|+ +|.+..+|. .|.++++|++|++ .+ +..+|..+
T Consensus 17 ~~~~l~~~~~~---l~~ip---~~~--~~~l~~L~l~--------~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~ 80 (270)
T 2o6q_A 17 NKNSVDCSSKK---LTAIP---SNI--PADTKKLDLQ--------SNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGI 80 (270)
T ss_dssp TTTEEECTTSC---CSSCC---SCC--CTTCSEEECC--------SSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTT
T ss_pred CCCEEEccCCC---CCccC---CCC--CCCCCEEECc--------CCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhh
Confidence 35666666643 22334 222 2456666666 666555543 4666666666666 33 55665443
Q ss_pred -cCCCCCceEeecCCCCCCccccc-cccccccceEEecCccccccccc-CCCccccccCC
Q 037953 173 -CELLNLQTLELENSSHFKRFPQG-IGKLINLRHLIFTEDLLEYMPKG-IEKLTSLRTLS 229 (625)
Q Consensus 173 -~~L~~L~~L~L~~~~~l~~lp~~-l~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~ 229 (625)
.++++|++|++++|. +..+|.. +.++++|++|+++.|.++.+|.. ++.+++|++|+
T Consensus 81 ~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 139 (270)
T 2o6q_A 81 FKELKNLETLWVTDNK-LQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLS 139 (270)
T ss_dssp TSSCTTCCEEECCSSC-CCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred hcCCCCCCEEECCCCc-CCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEE
Confidence 556666666666666 5555543 45666666666655555554432 33344443333
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
Probab=99.58 E-value=1.2e-15 Score=148.13 Aligned_cols=196 Identities=14% Similarity=0.116 Sum_probs=148.3
Q ss_pred CCCceEEEEEEcCCCCcchh-hhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccc-cchhhh
Q 037953 70 CPEKLRHLMLVLGYEAPSLV-SIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEE-DQTNEI 147 (625)
Q Consensus 70 ~~~~lr~L~l~~~~~~~~~~-~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~-~~l~~l 147 (625)
.+.+++.|++++|.+..+++ .+.++++|++|++++|. .+....+ ..|.++++|++|+++ + |.+..+
T Consensus 29 ~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~-~l~~i~~---~~f~~l~~L~~L~l~--------~~n~l~~i 96 (239)
T 2xwt_C 29 LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDV-TLQQLES---HSFYNLSKVTHIEIR--------NTRNLTYI 96 (239)
T ss_dssp CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCS-SCCEECT---TTEESCTTCCEEEEE--------EETTCCEE
T ss_pred CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCC-CcceeCH---hHcCCCcCCcEEECC--------CCCCeeEc
Confidence 56799999999999988876 78899999999999973 1344445 678999999999999 8 788888
Q ss_pred h-cccccccccceecC--CCCCCCchhhcCCCCCc---eEeecCCCCCCccccc-cccccccc-eEEecCcccccccccC
Q 037953 148 L-NGVEKLIHLRYLKL--NLVGDLPEKCCELLNLQ---TLELENSSHFKRFPQG-IGKLINLR-HLIFTEDLLEYMPKGI 219 (625)
Q Consensus 148 p-~~~~~L~~L~~L~L--~~l~~lP~~i~~L~~L~---~L~L~~~~~l~~lp~~-l~~L~~L~-~L~l~~~~l~~lp~~i 219 (625)
| ..|.++++|++|++ |.+..+|. ++.+++|+ +|++++|..++.+|.. +.++++|+ +|+++.|.++.+|...
T Consensus 97 ~~~~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~ 175 (239)
T 2xwt_C 97 DPDALKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYA 175 (239)
T ss_dssp CTTSEECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTT
T ss_pred CHHHhCCCCCCCEEeCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhh
Confidence 6 46899999999999 44888987 88888888 9999999338888875 89999999 9999999999999876
Q ss_pred CCccccccCCceEec-CCCCcCCCcccChhccccc-cccccceEEeccCCCCChhHHHHhccCCCCCCCeEEEEEe
Q 037953 220 EKLTSLRTLSEFVVA-SGGGRYGSEACKLEGLRHL-NHLRGSLKVRGLGNVADVDEVKNAHLEKKKNLVRLILRFK 293 (625)
Q Consensus 220 ~~L~~L~~L~~~~~~-~~~~~~~~~~~~l~~l~~L-~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 293 (625)
...++|+.|++..+. ... .....+..+ ++|+ .|.+++.. +... + -..+++|+.|+++++
T Consensus 176 ~~~~~L~~L~L~~n~~l~~-------i~~~~~~~l~~~L~-~L~l~~N~-l~~l----~--~~~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 176 FNGTKLDAVYLNKNKYLTV-------IDKDAFGGVYSGPS-LLDVSQTS-VTAL----P--SKGLEHLKELIARNT 236 (239)
T ss_dssp TTTCEEEEEECTTCTTCCE-------ECTTTTTTCSBCCS-EEECTTCC-CCCC----C--CTTCTTCSEEECTTC
T ss_pred cCCCCCCEEEcCCCCCccc-------CCHHHhhccccCCc-EEECCCCc-cccC----C--hhHhccCceeeccCc
Confidence 555888888876553 222 112234445 5565 67666521 1221 1 115677888877643
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
Probab=99.57 E-value=1.5e-14 Score=148.88 Aligned_cols=236 Identities=14% Similarity=0.087 Sum_probs=146.7
Q ss_pred ceecC-CC-CCCCchhhcCCCCCceEeecCCCCCCccccc-cccccccceEEecCccc-cccccc-CCCccccccCCceE
Q 037953 158 RYLKL-NL-VGDLPEKCCELLNLQTLELENSSHFKRFPQG-IGKLINLRHLIFTEDLL-EYMPKG-IEKLTSLRTLSEFV 232 (625)
Q Consensus 158 ~~L~L-~~-l~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~-l~~L~~L~~L~l~~~~l-~~lp~~-i~~L~~L~~L~~~~ 232 (625)
++++- .. ++++|..+ .+++++|+|++|. ++.+|.+ |.++++|++|+++.|.+ +.+|.+ +.++++++.+....
T Consensus 12 ~~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~-i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL--PRNAIELRFVLTK-LRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCCSCCTTC--CTTCSEEEEESCC-CSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCCccCcCc--CCCCCEEEccCCc-CCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 44455 33 88888776 3688999999988 8888875 78899999999977765 445543 44455444322211
Q ss_pred ecCCCCcCCCcccChhccccccccccceEEeccCCCCChhHHHHhccCCCCCCCeEEEEEecccccccCCcccccccchh
Q 037953 233 VASGGGRYGSEACKLEGLRHLNHLRGSLKVRGLGNVADVDEVKNAHLEKKKNLVRLILRFKDIDKAVKRWPEAISNENAA 312 (625)
Q Consensus 233 ~~~~~~~~~~~~~~l~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 312 (625)
.. .+ ....+..+..+++|+.|++++|.+.
T Consensus 89 ~N--------------------------------~l---~~l~~~~f~~l~~L~~L~l~~n~l~---------------- 117 (350)
T 4ay9_X 89 AN--------------------------------NL---LYINPEAFQNLPNLQYLLISNTGIK---------------- 117 (350)
T ss_dssp ET--------------------------------TC---CEECTTSBCCCTTCCEEEEEEECCS----------------
T ss_pred CC--------------------------------cc---cccCchhhhhccccccccccccccc----------------
Confidence 10 00 0111234667778888888887532
Q ss_pred hHHHHhhcCCCCCCCcEEEEeccC-CCcccCCchhhccc-ccccEEEEeCCCCCCCCCC-CCCCCCcceeecccccccee
Q 037953 313 KHEAICEALWPPPNLESLEIAGFR-GRKMMLSTNWMASL-NMLKKLRLLNCPTCEIMPP-LGQLPSLEILLIKDMTSVER 389 (625)
Q Consensus 313 ~~~~~~~~l~~~~~L~~L~L~~~~-~~~~~~~p~~l~~l-~~L~~L~L~~c~~l~~l~~-l~~l~~L~~L~L~~~~~l~~ 389 (625)
...........++..|++.++. ...+. +..+..+ ..++.|++++| .++.++. ....++|+.|.+.+++.++.
T Consensus 118 --~~~~~~~~~~~~l~~l~l~~~~~i~~l~--~~~f~~~~~~l~~L~L~~N-~i~~i~~~~f~~~~L~~l~l~~~n~l~~ 192 (350)
T 4ay9_X 118 --HLPDVHKIHSLQKVLLDIQDNINIHTIE--RNSFVGLSFESVILWLNKN-GIQEIHNSAFNGTQLDELNLSDNNNLEE 192 (350)
T ss_dssp --SCCCCTTCCBSSCEEEEEESCTTCCEEC--TTSSTTSBSSCEEEECCSS-CCCEECTTSSTTEEEEEEECTTCTTCCC
T ss_pred --cCCchhhcccchhhhhhhcccccccccc--ccchhhcchhhhhhccccc-cccCCChhhccccchhHHhhccCCcccC
Confidence 0001112233456667776543 33331 2233333 35777888774 4555553 44567788888887777877
Q ss_pred eCccCCCCCCCCCCCCCCCCCCCCCCCCCCeeeccCcccccccccCCCCcccCCCccEEEEecCCCCCcCCcCCCCCCCC
Q 037953 390 VGDESLGIANGDHGAPSSSSVNNIAFPKLKELEFSGLQEWEDWDFRKEDITIMPQINSLSIYGCHKLKSLPDQLLQSSTL 469 (625)
Q Consensus 390 l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L 469 (625)
+|.+. +..+++|+.|+++++ +++.++.. .+.+|+.|.+.+|+.++.+|. +..+++|
T Consensus 193 i~~~~-----------------f~~l~~L~~LdLs~N-~l~~lp~~-----~~~~L~~L~~l~~~~l~~lP~-l~~l~~L 248 (350)
T 4ay9_X 193 LPNDV-----------------FHGASGPVILDISRT-RIHSLPSY-----GLENLKKLRARSTYNLKKLPT-LEKLVAL 248 (350)
T ss_dssp CCTTT-----------------TTTEECCSEEECTTS-CCCCCCSS-----SCTTCCEEECTTCTTCCCCCC-TTTCCSC
T ss_pred CCHHH-----------------hccCcccchhhcCCC-CcCccChh-----hhccchHhhhccCCCcCcCCC-chhCcCh
Confidence 77653 456778888888876 45555422 477788888888888888874 5667888
Q ss_pred CEEEEec
Q 037953 470 KTLRINR 476 (625)
Q Consensus 470 ~~L~l~~ 476 (625)
+.+++.+
T Consensus 249 ~~l~l~~ 255 (350)
T 4ay9_X 249 MEASLTY 255 (350)
T ss_dssp CEEECSC
T ss_pred hhCcCCC
Confidence 8888754
|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.56 E-value=4.8e-15 Score=149.87 Aligned_cols=224 Identities=14% Similarity=0.064 Sum_probs=146.8
Q ss_pred CCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchh-hhhccc--ccccccceecC--CCCCC-
Q 037953 94 AIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTN-EILNGV--EKLIHLRYLKL--NLVGD- 167 (625)
Q Consensus 94 l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~-~lp~~~--~~L~~L~~L~L--~~l~~- 167 (625)
...++.+.+.++... ...+..+ ..+..+++|++|+++ +|.+. ..|..+ +.+++|++|+| |.+..
T Consensus 63 ~~~l~~l~l~~~~~~-~~~~~~~-~~~~~~~~L~~L~l~--------~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~ 132 (310)
T 4glp_A 63 ALRVRRLTVGAAQVP-AQLLVGA-LRVLAYSRLKELTLE--------DLKITGTMPPLPLEATGLALSSLRLRNVSWATG 132 (310)
T ss_dssp SCCCCEEEECSCCCB-HHHHHHH-HHHHHHSCCCEEEEE--------SCCCBSCCCCCSSSCCCBCCSSCEEESCCCSST
T ss_pred hcceeEEEEeCCcCC-HHHHHHH-HHhcccCceeEEEee--------CCEeccchhhhhhhccCCCCCEEEeecccccch
Confidence 345777777775421 1111100 012345679999999 77754 456666 88889999999 44543
Q ss_pred Cc----hhhcCCCCCceEeecCCCCCCccc-cccccccccceEEecCccccc---ccc--cCCCccccccCCceEecCCC
Q 037953 168 LP----EKCCELLNLQTLELENSSHFKRFP-QGIGKLINLRHLIFTEDLLEY---MPK--GIEKLTSLRTLSEFVVASGG 237 (625)
Q Consensus 168 lP----~~i~~L~~L~~L~L~~~~~l~~lp-~~l~~L~~L~~L~l~~~~l~~---lp~--~i~~L~~L~~L~~~~~~~~~ 237 (625)
.| ..+..+++|++|++++|. +..+| ..++++++|++|++++|.+.. ++. .++.+++|++|++..+...
T Consensus 133 ~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~- 210 (310)
T 4glp_A 133 RSWLAELQQWLKPGLKVLSIAQAH-SPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME- 210 (310)
T ss_dssp TSSHHHHHTTBCSCCCEEEEECCS-SCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-
T ss_pred hhhhHHHHhhhccCCCEEEeeCCC-cchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-
Confidence 33 345678899999999998 66655 568889999999997776543 322 2356666776665433211
Q ss_pred CcCCCcccChhccccccccccceEEeccCCCCChhHHHHhccCCCCCCCeEEEEEecccccccCCcccccccchhhHHHH
Q 037953 238 GRYGSEACKLEGLRHLNHLRGSLKVRGLGNVADVDEVKNAHLEKKKNLVRLILRFKDIDKAVKRWPEAISNENAAKHEAI 317 (625)
Q Consensus 238 ~~~~~~~~~l~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (625)
.........+..+++|++|++++|.++ ...
T Consensus 211 --------------------------------~l~~~~~~l~~~l~~L~~L~Ls~N~l~------------------~~~ 240 (310)
T 4glp_A 211 --------------------------------TPTGVCAALAAAGVQPHSLDLSHNSLR------------------ATV 240 (310)
T ss_dssp --------------------------------CHHHHHHHHHHHTCCCSSEECTTSCCC------------------CCC
T ss_pred --------------------------------chHHHHHHHHhcCCCCCEEECCCCCCC------------------ccc
Confidence 111111122355678888888877532 111
Q ss_pred hhcCCC---CCCCcEEEEeccCCCcccCCchhhcccccccEEEEeCCCCCCCCCCCCCCCCcceeeccccc
Q 037953 318 CEALWP---PPNLESLEIAGFRGRKMMLSTNWMASLNMLKKLRLLNCPTCEIMPPLGQLPSLEILLIKDMT 385 (625)
Q Consensus 318 ~~~l~~---~~~L~~L~L~~~~~~~~~~~p~~l~~l~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~~~ 385 (625)
+..+.. +++|++|++++|....+ |..+. ++|+.|++++| .++.+|.+..+++|+.|++++|+
T Consensus 241 p~~~~~~~~~~~L~~L~Ls~N~l~~l---p~~~~--~~L~~L~Ls~N-~l~~~~~~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 241 NPSAPRCMWSSALNSLNLSFAGLEQV---PKGLP--AKLRVLDLSSN-RLNRAPQPDELPEVDNLTLDGNP 305 (310)
T ss_dssp CSCCSSCCCCTTCCCEECCSSCCCSC---CSCCC--SCCSCEECCSC-CCCSCCCTTSCCCCSCEECSSTT
T ss_pred hhhHHhccCcCcCCEEECCCCCCCch---hhhhc--CCCCEEECCCC-cCCCCchhhhCCCccEEECcCCC
Confidence 233333 37999999999988877 87764 89999999985 56667777889999999999876
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.7e-14 Score=135.48 Aligned_cols=146 Identities=18% Similarity=0.172 Sum_probs=123.5
Q ss_pred CCceEEEEEEcCCCCcchhhhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhh-hhc
Q 037953 71 PEKLRHLMLVLGYEAPSLVSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNE-ILN 149 (625)
Q Consensus 71 ~~~lr~L~l~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~-lp~ 149 (625)
.+++++|++++|.+..+| .+..+++|++|++++|. ...+ ..+..+++|++|+++ +|.+.. .|.
T Consensus 43 l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~---~~~~----~~l~~l~~L~~L~l~--------~n~l~~~~~~ 106 (197)
T 4ezg_A 43 MNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIH---ATNY----NPISGLSNLERLRIM--------GKDVTSDKIP 106 (197)
T ss_dssp HHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCC---CSCC----GGGTTCTTCCEEEEE--------CTTCBGGGSC
T ss_pred cCCccEEeccCCCccChH-HHhcCCCCCEEEccCCC---CCcc----hhhhcCCCCCEEEeE--------CCccCcccCh
Confidence 468999999999998888 68899999999999984 3333 358899999999999 888764 677
Q ss_pred ccccccccceecC-CC-CC-CCchhhcCCCCCceEeecCCCCCCccccccccccccceEEecCcccccccccCCCccccc
Q 037953 150 GVEKLIHLRYLKL-NL-VG-DLPEKCCELLNLQTLELENSSHFKRFPQGIGKLINLRHLIFTEDLLEYMPKGIEKLTSLR 226 (625)
Q Consensus 150 ~~~~L~~L~~L~L-~~-l~-~lP~~i~~L~~L~~L~L~~~~~l~~lp~~l~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~ 226 (625)
.++.+++|++|++ ++ +. ..|..++++++|++|++++|..++.+| .+..+++|++|++++|.++.++ .+..+++|+
T Consensus 107 ~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~ 184 (197)
T 4ezg_A 107 NLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR-GIEDFPKLN 184 (197)
T ss_dssp CCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT-TGGGCSSCC
T ss_pred hhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH-HhccCCCCC
Confidence 8999999999999 44 65 477889999999999999997688887 6999999999999989898887 778888888
Q ss_pred cCCceEec
Q 037953 227 TLSEFVVA 234 (625)
Q Consensus 227 ~L~~~~~~ 234 (625)
+|++..+.
T Consensus 185 ~L~l~~N~ 192 (197)
T 4ezg_A 185 QLYAFSQT 192 (197)
T ss_dssp EEEECBC-
T ss_pred EEEeeCcc
Confidence 88766544
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
Probab=99.51 E-value=2.7e-14 Score=139.70 Aligned_cols=150 Identities=27% Similarity=0.346 Sum_probs=91.1
Q ss_pred CCceEEEEEEcCCCCcch-hhhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhhhc
Q 037953 71 PEKLRHLMLVLGYEAPSL-VSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEILN 149 (625)
Q Consensus 71 ~~~lr~L~l~~~~~~~~~-~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp~ 149 (625)
+.+++.|++++|.+..++ ..+.++++|++|++++|. +....| ..|.++++|++|+|+ +|.+..+|.
T Consensus 34 ~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~--l~~~~~---~~~~~l~~L~~L~L~--------~n~l~~~~~ 100 (251)
T 3m19_A 34 PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQ--LQTLSA---GVFDDLTELGTLGLA--------NNQLASLPL 100 (251)
T ss_dssp CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC--CCCCCT---TTTTTCTTCCEEECT--------TSCCCCCCT
T ss_pred CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCc--CCccCH---hHhccCCcCCEEECC--------CCcccccCh
Confidence 456666666666664443 356666667777766644 344444 556666667777776 666555543
Q ss_pred -ccccccccceecC-CC-CCCCchh-hcCCCCCceEeecCCCCCCcccc-ccccccccceEEecCcccccccc-cCCCcc
Q 037953 150 -GVEKLIHLRYLKL-NL-VGDLPEK-CCELLNLQTLELENSSHFKRFPQ-GIGKLINLRHLIFTEDLLEYMPK-GIEKLT 223 (625)
Q Consensus 150 -~~~~L~~L~~L~L-~~-l~~lP~~-i~~L~~L~~L~L~~~~~l~~lp~-~l~~L~~L~~L~l~~~~l~~lp~-~i~~L~ 223 (625)
.|..+++|++|+| ++ +..+|.. +.++++|++|+|++|. ++.+|. .++++++|++|+++.|.++.+|. .+..++
T Consensus 101 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 179 (251)
T 3m19_A 101 GVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQ-LQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLG 179 (251)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCT
T ss_pred hHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCc-CCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCC
Confidence 3566666777776 33 6666544 4566667777776666 666655 36666667777776666666654 355566
Q ss_pred ccccCCceEec
Q 037953 224 SLRTLSEFVVA 234 (625)
Q Consensus 224 ~L~~L~~~~~~ 234 (625)
+|+.|++..+.
T Consensus 180 ~L~~L~l~~N~ 190 (251)
T 3m19_A 180 KLQTITLFGNQ 190 (251)
T ss_dssp TCCEEECCSCC
T ss_pred CCCEEEeeCCc
Confidence 66666554443
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
Probab=99.51 E-value=2.4e-14 Score=140.03 Aligned_cols=147 Identities=25% Similarity=0.254 Sum_probs=121.7
Q ss_pred CceEEEEEEcCCCCcchhhhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhhh-cc
Q 037953 72 EKLRHLMLVLGYEAPSLVSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEIL-NG 150 (625)
Q Consensus 72 ~~lr~L~l~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp-~~ 150 (625)
.+.+++++.++.+..+|..+. +.++.|++++|. +....| ..|.++++|++|+|+ +|.+..++ ..
T Consensus 14 ~~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~--l~~~~~---~~~~~l~~L~~L~L~--------~n~l~~~~~~~ 78 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTG--LATLSD---ATFRGLTKLTWLNLD--------YNQLQTLSAGV 78 (251)
T ss_dssp GGGTEEECTTCCCSSCCSCCC--TTCCEEECTTSC--CCCCCT---TTTTTCTTCCEEECT--------TSCCCCCCTTT
T ss_pred CCCeEEecCCCCccccCCCCC--CCCCEEEccCCC--cCccCH---hHhcCcccCCEEECC--------CCcCCccCHhH
Confidence 345678888888888888765 789999999975 455666 779999999999999 88877765 45
Q ss_pred cccccccceecC-CC-CCCCch-hhcCCCCCceEeecCCCCCCccccc-cccccccceEEecCcccccccc-cCCCcccc
Q 037953 151 VEKLIHLRYLKL-NL-VGDLPE-KCCELLNLQTLELENSSHFKRFPQG-IGKLINLRHLIFTEDLLEYMPK-GIEKLTSL 225 (625)
Q Consensus 151 ~~~L~~L~~L~L-~~-l~~lP~-~i~~L~~L~~L~L~~~~~l~~lp~~-l~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L 225 (625)
|..+++|++|+| ++ +..+|. .+..+++|++|+|++|. ++.+|.. +.++++|++|++++|.++.+|. .++.+++|
T Consensus 79 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 157 (251)
T 3m19_A 79 FDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQ-LKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNL 157 (251)
T ss_dssp TTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred hccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCc-CCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCC
Confidence 899999999999 44 878774 57899999999999998 8888876 6889999999999999998887 47888888
Q ss_pred ccCCceEec
Q 037953 226 RTLSEFVVA 234 (625)
Q Consensus 226 ~~L~~~~~~ 234 (625)
++|++..+.
T Consensus 158 ~~L~L~~N~ 166 (251)
T 3m19_A 158 QTLSLSTNQ 166 (251)
T ss_dssp CEEECCSSC
T ss_pred CEEECCCCc
Confidence 888765543
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
Probab=99.50 E-value=6.7e-14 Score=139.96 Aligned_cols=138 Identities=17% Similarity=0.207 Sum_probs=83.5
Q ss_pred CceEEEEEEcCCCCcchhhhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhhhccc
Q 037953 72 EKLRHLMLVLGYEAPSLVSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEILNGV 151 (625)
Q Consensus 72 ~~lr~L~l~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp~~~ 151 (625)
.+++.|++.++.+..++ .+..+++|++|++++|. ...++ . +.++++|++|+++ +|.+..+| .+
T Consensus 46 ~~L~~L~l~~~~i~~~~-~~~~l~~L~~L~L~~n~---l~~~~---~-l~~l~~L~~L~l~--------~n~l~~~~-~l 108 (291)
T 1h6t_A 46 NSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNK---LTDIK---P-LANLKNLGWLFLD--------ENKVKDLS-SL 108 (291)
T ss_dssp HTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSC---CCCCG---G-GTTCTTCCEEECC--------SSCCCCGG-GG
T ss_pred CcccEEEccCCCcccCh-hHhcCCCCCEEEccCCc---cCCCc---c-cccCCCCCEEECC--------CCcCCCCh-hh
Confidence 45666666666665554 35666667777766654 22333 3 6666667777776 66655554 36
Q ss_pred ccccccceecC-CC-CCCCchhhcCCCCCceEeecCCCCCCccccccccccccceEEecCcccccccccCCCccccccCC
Q 037953 152 EKLIHLRYLKL-NL-VGDLPEKCCELLNLQTLELENSSHFKRFPQGIGKLINLRHLIFTEDLLEYMPKGIEKLTSLRTLS 229 (625)
Q Consensus 152 ~~L~~L~~L~L-~~-l~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~l~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~ 229 (625)
+.+++|++|++ .+ +..++ .+..+++|++|++++|. ++.+ ..++++++|++|++++|.++.++. +..+++|+.|+
T Consensus 109 ~~l~~L~~L~L~~n~i~~~~-~l~~l~~L~~L~l~~n~-l~~~-~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~ 184 (291)
T 1h6t_A 109 KDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNK-ITDI-TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLY 184 (291)
T ss_dssp TTCTTCCEEECTTSCCCCCG-GGGGCTTCCEEECCSSC-CCCC-GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEE
T ss_pred ccCCCCCEEECCCCcCCCCh-hhcCCCCCCEEEccCCc-CCcc-hhhccCCCCCEEEccCCccccchh-hcCCCccCEEE
Confidence 66666666666 33 55553 56666666666666666 6555 356666666666666666665544 55555555554
Q ss_pred c
Q 037953 230 E 230 (625)
Q Consensus 230 ~ 230 (625)
+
T Consensus 185 L 185 (291)
T 1h6t_A 185 L 185 (291)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.47 E-value=6.7e-14 Score=134.74 Aligned_cols=145 Identities=25% Similarity=0.354 Sum_probs=116.6
Q ss_pred EEEEEEcCCCCcchhhhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhhhcc-ccc
Q 037953 75 RHLMLVLGYEAPSLVSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEILNG-VEK 153 (625)
Q Consensus 75 r~L~l~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp~~-~~~ 153 (625)
+.++.+++.+..+|..+. ++|++|++++|. +....| ..|.++++|++|+|+ +|.+..+|.. |..
T Consensus 22 ~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~--i~~~~~---~~~~~l~~L~~L~L~--------~N~l~~i~~~~~~~ 86 (229)
T 3e6j_A 22 TTVDCRSKRHASVPAGIP--TNAQILYLHDNQ--ITKLEP---GVFDSLINLKELYLG--------SNQLGALPVGVFDS 86 (229)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCSEEECCSSC--CCCCCT---TTTTTCTTCCEEECC--------SSCCCCCCTTTTTT
T ss_pred CEeEccCCCcCccCCCCC--CCCCEEEcCCCc--cCccCH---HHhhCccCCcEEECC--------CCCCCCcChhhccc
Confidence 356677777788887654 889999999965 555667 778899999999999 8888888744 788
Q ss_pred ccccceecC-CC-CCCCchh-hcCCCCCceEeecCCCCCCccccccccccccceEEecCccccccccc-CCCccccccCC
Q 037953 154 LIHLRYLKL-NL-VGDLPEK-CCELLNLQTLELENSSHFKRFPQGIGKLINLRHLIFTEDLLEYMPKG-IEKLTSLRTLS 229 (625)
Q Consensus 154 L~~L~~L~L-~~-l~~lP~~-i~~L~~L~~L~L~~~~~l~~lp~~l~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~ 229 (625)
+++|++|+| ++ +..+|.. +..+++|++|+|++|. +..+|..+.++++|++|+++.|.++.+|.. +..+++|+.|+
T Consensus 87 l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 165 (229)
T 3e6j_A 87 LTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNK-LTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAY 165 (229)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCc-ccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEE
Confidence 999999999 44 8888765 6789999999999998 889998899999999999988888888754 67788888777
Q ss_pred ceEecC
Q 037953 230 EFVVAS 235 (625)
Q Consensus 230 ~~~~~~ 235 (625)
+..+..
T Consensus 166 l~~N~~ 171 (229)
T 3e6j_A 166 LFGNPW 171 (229)
T ss_dssp CTTSCB
T ss_pred eeCCCc
Confidence 655443
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
Probab=99.46 E-value=2.7e-14 Score=156.74 Aligned_cols=59 Identities=19% Similarity=0.219 Sum_probs=30.3
Q ss_pred CCCCCCcEEEEeccCCCcccCCchhhcccccccEEEEeCCCCCCCCCCCCCCCCcceeeccccc
Q 037953 322 WPPPNLESLEIAGFRGRKMMLSTNWMASLNMLKKLRLLNCPTCEIMPPLGQLPSLEILLIKDMT 385 (625)
Q Consensus 322 ~~~~~L~~L~L~~~~~~~~~~~p~~l~~l~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~~~ 385 (625)
..+++|+.|+|++|..... +. +..+++|+.|+|++| .+..++.+..+++|+.|+|++|+
T Consensus 150 ~~l~~L~~L~Ls~N~l~~~---~~-l~~l~~L~~L~Ls~N-~i~~l~~l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 150 SRLTKLDTLSLEDNQISDI---VP-LAGLTKLQNLYLSKN-HISDLRALAGLKNLDVLELFSQE 208 (605)
T ss_dssp GSCTTCSEEECCSSCCCCC---GG-GTTCTTCCEEECCSS-CCCBCGGGTTCTTCSEEECCSEE
T ss_pred cccCCCCEEECcCCcCCCc---hh-hccCCCCCEEECcCC-CCCCChHHccCCCCCEEEccCCc
Confidence 3444555555555544443 22 455555555555553 33444555555666666665544
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.45 E-value=2.2e-14 Score=148.40 Aligned_cols=251 Identities=11% Similarity=0.035 Sum_probs=129.9
Q ss_pred EEEcCCCCcc-hhhhccCCcceEEEeecccCCccccCc-hhhHHHhcCC-ceeEEEeecCCCccccccchhhh-hccccc
Q 037953 78 MLVLGYEAPS-LVSIFNAIKLRSLILFYWIPNLDAMLP-VLKGIFDQLT-CLRALRIEGTDNWELEEDQTNEI-LNGVEK 153 (625)
Q Consensus 78 ~l~~~~~~~~-~~~~~~l~~Lr~L~L~~~~~~~~~~lp-~~~~~~~~l~-~Lr~L~Ls~c~~~~~~~~~l~~l-p~~~~~ 153 (625)
.++.+.+... |..+...++|++|++++|. +....+ .+...+.+++ +|++|+|+ +|.+... +..+..
T Consensus 4 ~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~--l~~~~~~~l~~~l~~~~~~L~~L~Ls--------~N~l~~~~~~~l~~ 73 (362)
T 3goz_A 4 KLTLHPGSNPVEEFTSIPHGVTSLDLSLNN--LYSISTVELIQAFANTPASVTSLNLS--------GNSLGFKNSDELVQ 73 (362)
T ss_dssp ECCCCTTCCHHHHHHTSCTTCCEEECTTSC--GGGSCHHHHHHHHHTCCTTCCEEECC--------SSCGGGSCHHHHHH
T ss_pred ccccccchHHHHHHHhCCCCceEEEccCCC--CChHHHHHHHHHHHhCCCceeEEECc--------CCCCCHHHHHHHHH
Confidence 3445555433 3333344448888888865 222211 0114466677 78888888 6665543 444555
Q ss_pred c-----cccceecC--CCCCCC-chh----hcCC-CCCceEeecCCCCCCccccc-----ccc-ccccceEEecCccccc
Q 037953 154 L-----IHLRYLKL--NLVGDL-PEK----CCEL-LNLQTLELENSSHFKRFPQG-----IGK-LINLRHLIFTEDLLEY 214 (625)
Q Consensus 154 L-----~~L~~L~L--~~l~~l-P~~----i~~L-~~L~~L~L~~~~~l~~lp~~-----l~~-L~~L~~L~l~~~~l~~ 214 (625)
+ ++|++|+| |.+... +.. +..+ ++|++|++++|. ++..+.. +.. .++|++|++++|.++.
T Consensus 74 ~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~ 152 (362)
T 3goz_A 74 ILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGNDLGI 152 (362)
T ss_dssp HHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTSCGGG
T ss_pred HHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCCcCCH
Confidence 4 77788888 335433 332 3444 778888888887 6655432 223 2578888886666652
Q ss_pred -----ccccCCCcc-ccccCCceEecCCCCcCCCcccChhccccccccccceEEeccCCCCChhHHHHhccCCC-CCCCe
Q 037953 215 -----MPKGIEKLT-SLRTLSEFVVASGGGRYGSEACKLEGLRHLNHLRGSLKVRGLGNVADVDEVKNAHLEKK-KNLVR 287 (625)
Q Consensus 215 -----lp~~i~~L~-~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l-~~L~~ 287 (625)
++..+..+. +|++|++..+.... .....+...+... ++|+.
T Consensus 153 ~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~--------------------------------~~~~~l~~~l~~~~~~L~~ 200 (362)
T 3goz_A 153 KSSDELIQILAAIPANVNSLNLRGNNLAS--------------------------------KNCAELAKFLASIPASVTS 200 (362)
T ss_dssp SCHHHHHHHHHTSCTTCCEEECTTSCGGG--------------------------------SCHHHHHHHHHTSCTTCCE
T ss_pred HHHHHHHHHHhcCCccccEeeecCCCCch--------------------------------hhHHHHHHHHHhCCCCCCE
Confidence 222222222 44444433221111 1111122233344 36777
Q ss_pred EEEEEecccccccCCcccccccchhhHHHHhhcCCC-CCCCcEEEEeccCCCccc--CCchhhcccccccEEEEeCCCC-
Q 037953 288 LILRFKDIDKAVKRWPEAISNENAAKHEAICEALWP-PPNLESLEIAGFRGRKMM--LSTNWMASLNMLKKLRLLNCPT- 363 (625)
Q Consensus 288 L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~L~~L~L~~~~~~~~~--~~p~~l~~l~~L~~L~L~~c~~- 363 (625)
|++++|.++. .....++..+.. .++|+.|++++|...... .+...+..+++|+.|++++|..
T Consensus 201 L~Ls~N~i~~--------------~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~ 266 (362)
T 3goz_A 201 LDLSANLLGL--------------KSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVK 266 (362)
T ss_dssp EECTTSCGGG--------------SCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHT
T ss_pred EECCCCCCCh--------------hHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCcc
Confidence 7776664220 011234444433 347777777777654420 0012234667777777777541
Q ss_pred -CC-----CCC-CCCCCCCcceeeccccc
Q 037953 364 -CE-----IMP-PLGQLPSLEILLIKDMT 385 (625)
Q Consensus 364 -l~-----~l~-~l~~l~~L~~L~L~~~~ 385 (625)
+. .++ .+..+++|+.|++++|.
T Consensus 267 ~i~~~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 267 NMSKEQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp TCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred ccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence 11 111 35677888888888766
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=99.45 E-value=1e-13 Score=155.95 Aligned_cols=155 Identities=18% Similarity=0.149 Sum_probs=98.5
Q ss_pred CCCceEEEEEEcCCCCcchhhhccCCcceEEEeeccc--CCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhh
Q 037953 70 CPEKLRHLMLVLGYEAPSLVSIFNAIKLRSLILFYWI--PNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEI 147 (625)
Q Consensus 70 ~~~~lr~L~l~~~~~~~~~~~~~~l~~Lr~L~L~~~~--~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~l 147 (625)
...+++++++..+.....+..+.....|+.+.+.... .+....+| +.|..+++|++|+|+ +|.+..+
T Consensus 171 s~~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~---~~~~~l~~L~~L~Ls--------~n~l~~l 239 (727)
T 4b8c_D 171 STPLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMVMPK---DSKYDDQLWHALDLS--------NLQIFNI 239 (727)
T ss_dssp ------------------------------------------------------CCCCCCEEECT--------TSCCSCC
T ss_pred cCCccceEEeeCCCCCcchhhHhhcCccCcccccCccccccceecCh---hhhccCCCCcEEECC--------CCCCCCC
Confidence 3456899999998887777666555555555544421 11123556 889999999999999 9998899
Q ss_pred hcccccccccceecC-CC-CCCCchhhcCCCCCceEeecCCCCCCccccccccccccceEEecCcccccccccCCCcccc
Q 037953 148 LNGVEKLIHLRYLKL-NL-VGDLPEKCCELLNLQTLELENSSHFKRFPQGIGKLINLRHLIFTEDLLEYMPKGIEKLTSL 225 (625)
Q Consensus 148 p~~~~~L~~L~~L~L-~~-l~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~l~~L~~L~~L~l~~~~l~~lp~~i~~L~~L 225 (625)
|..+.++++|++|+| ++ +..+|..+++|++|++|+|++|. ++.+|..+++|++|++|++++|.++.+|..++++++|
T Consensus 240 ~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L 318 (727)
T 4b8c_D 240 SANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNR-LTSLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNL 318 (727)
T ss_dssp CGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSC-CSSCCSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTC
T ss_pred ChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCc-CCccChhhcCCCCCCEEECCCCCCCccChhhhcCCCc
Confidence 988999999999999 44 88999999999999999999999 8899999999999999999999999999999999999
Q ss_pred ccCCceEecCC
Q 037953 226 RTLSEFVVASG 236 (625)
Q Consensus 226 ~~L~~~~~~~~ 236 (625)
+.|++..+...
T Consensus 319 ~~L~L~~N~l~ 329 (727)
T 4b8c_D 319 QFLGVEGNPLE 329 (727)
T ss_dssp CCEECTTSCCC
T ss_pred cEEeCCCCccC
Confidence 99988766554
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.44 E-value=6.7e-14 Score=144.75 Aligned_cols=155 Identities=14% Similarity=0.087 Sum_probs=109.9
Q ss_pred ccccCCCCceEEEEEEcCCCCcch-----hhhccCC-cceEEEeecccCCccccCchhhHHHhcC-----CceeEEEeec
Q 037953 65 LLINTCPEKLRHLMLVLGYEAPSL-----VSIFNAI-KLRSLILFYWIPNLDAMLPVLKGIFDQL-----TCLRALRIEG 133 (625)
Q Consensus 65 ~~~~~~~~~lr~L~l~~~~~~~~~-----~~~~~l~-~Lr~L~L~~~~~~~~~~lp~~~~~~~~l-----~~Lr~L~Ls~ 133 (625)
|.....+.++++|++++|.+...+ ..+..++ +|++|++++|. +....+ ..+..+ ++|++|+|+
T Consensus 15 ~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~--l~~~~~---~~l~~~l~~~~~~L~~L~Ls- 88 (362)
T 3goz_A 15 EEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNS--LGFKNS---DELVQILAAIPANVTSLNLS- 88 (362)
T ss_dssp HHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSC--GGGSCH---HHHHHHHHTSCTTCCEEECC-
T ss_pred HHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCC--CCHHHH---HHHHHHHhccCCCccEEECc-
Confidence 444556778999999999986554 5677888 99999999975 444444 556654 999999999
Q ss_pred CCCccccccchhhh-hcc----cccc-cccceecC--CCCCCCch-h----hcC-CCCCceEeecCCCCCC-----cccc
Q 037953 134 TDNWELEEDQTNEI-LNG----VEKL-IHLRYLKL--NLVGDLPE-K----CCE-LLNLQTLELENSSHFK-----RFPQ 194 (625)
Q Consensus 134 c~~~~~~~~~l~~l-p~~----~~~L-~~L~~L~L--~~l~~lP~-~----i~~-L~~L~~L~L~~~~~l~-----~lp~ 194 (625)
+|.+... +.. +..+ ++|++|+| |.+...+. . +.. .++|++|+|++|. ++ .++.
T Consensus 89 -------~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~ 160 (362)
T 3goz_A 89 -------GNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGND-LGIKSSDELIQ 160 (362)
T ss_dssp -------SSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSC-GGGSCHHHHHH
T ss_pred -------CCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCc-CCHHHHHHHHH
Confidence 7776644 333 4445 89999999 44666543 3 344 3699999999998 76 4555
Q ss_pred cccccc-ccceEEecCcccccccc-----cCCCc-cccccCCceEe
Q 037953 195 GIGKLI-NLRHLIFTEDLLEYMPK-----GIEKL-TSLRTLSEFVV 233 (625)
Q Consensus 195 ~l~~L~-~L~~L~l~~~~l~~lp~-----~i~~L-~~L~~L~~~~~ 233 (625)
.+..++ +|++|++++|.++..+. .+..+ ++|++|++..+
T Consensus 161 ~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N 206 (362)
T 3goz_A 161 ILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSAN 206 (362)
T ss_dssp HHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTS
T ss_pred HHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCC
Confidence 566666 99999998888866542 22333 46666665433
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
Probab=99.44 E-value=1.3e-13 Score=131.74 Aligned_cols=143 Identities=20% Similarity=0.229 Sum_probs=94.5
Q ss_pred EEEEEcCCCCcchhhhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhh-hcccccc
Q 037953 76 HLMLVLGYEAPSLVSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEI-LNGVEKL 154 (625)
Q Consensus 76 ~L~l~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~l-p~~~~~L 154 (625)
.+++.++.+..+|..+. ++|++|++++|. +....+ ..|..+++|++|+|+ +|.+..+ |..|.++
T Consensus 15 ~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~--i~~i~~---~~~~~l~~L~~L~Ls--------~N~i~~~~~~~~~~l 79 (220)
T 2v9t_B 15 IVDCRGKGLTEIPTNLP--ETITEIRLEQNT--IKVIPP---GAFSPYKKLRRIDLS--------NNQISELAPDAFQGL 79 (220)
T ss_dssp EEECTTSCCSSCCSSCC--TTCCEEECCSSC--CCEECT---TSSTTCTTCCEEECC--------SSCCCEECTTTTTTC
T ss_pred EEEcCCCCcCcCCCccC--cCCCEEECCCCc--CCCcCH---hHhhCCCCCCEEECC--------CCcCCCcCHHHhhCC
Confidence 45555566666666543 567777777754 344444 567777777777777 7776655 5667777
Q ss_pred cccceecC-CC-CCCCchh-hcCCCCCceEeecCCCCCCcc-ccccccccccceEEecCccccccccc-CCCccccccCC
Q 037953 155 IHLRYLKL-NL-VGDLPEK-CCELLNLQTLELENSSHFKRF-PQGIGKLINLRHLIFTEDLLEYMPKG-IEKLTSLRTLS 229 (625)
Q Consensus 155 ~~L~~L~L-~~-l~~lP~~-i~~L~~L~~L~L~~~~~l~~l-p~~l~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~ 229 (625)
++|++|+| ++ +..+|.. +..+++|++|+|++|. +..+ |..+..+++|++|++++|.++.+|.. +..+++|+.|+
T Consensus 80 ~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 158 (220)
T 2v9t_B 80 RSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANK-INCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMH 158 (220)
T ss_dssp SSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred cCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCC-CCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEE
Confidence 77777777 33 7777655 4667777777777777 6655 34477777777777777777776654 66666666666
Q ss_pred ceEec
Q 037953 230 EFVVA 234 (625)
Q Consensus 230 ~~~~~ 234 (625)
+..+.
T Consensus 159 L~~N~ 163 (220)
T 2v9t_B 159 LAQNP 163 (220)
T ss_dssp CCSSC
T ss_pred eCCCC
Confidence 54443
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
Probab=99.44 E-value=3.2e-13 Score=135.03 Aligned_cols=148 Identities=22% Similarity=0.235 Sum_probs=128.3
Q ss_pred CCCCceEEEEEEcCCCCcchhhhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhhh
Q 037953 69 TCPEKLRHLMLVLGYEAPSLVSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEIL 148 (625)
Q Consensus 69 ~~~~~lr~L~l~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp 148 (625)
...++++.|++++|.+..+++ +.++++|++|++++|. ...+| . +..+++|++|+++ +|.+..++
T Consensus 65 ~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~---l~~~~---~-l~~l~~L~~L~L~--------~n~i~~~~ 128 (291)
T 1h6t_A 65 QYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENK---VKDLS---S-LKDLKKLKSLSLE--------HNGISDIN 128 (291)
T ss_dssp GGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC---CCCGG---G-GTTCTTCCEEECT--------TSCCCCCG
T ss_pred hcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCc---CCCCh---h-hccCCCCCEEECC--------CCcCCCCh
Confidence 346799999999999988877 8999999999999976 33444 3 8999999999999 88888775
Q ss_pred cccccccccceecC-CC-CCCCchhhcCCCCCceEeecCCCCCCccccccccccccceEEecCcccccccccCCCccccc
Q 037953 149 NGVEKLIHLRYLKL-NL-VGDLPEKCCELLNLQTLELENSSHFKRFPQGIGKLINLRHLIFTEDLLEYMPKGIEKLTSLR 226 (625)
Q Consensus 149 ~~~~~L~~L~~L~L-~~-l~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~l~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~ 226 (625)
.+..+++|++|++ ++ +..+ ..++++++|++|++++|. +..++. +..+++|++|++++|.++.+|. +..+++|+
T Consensus 129 -~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~-l~~~~~-l~~l~~L~~L~L~~N~i~~l~~-l~~l~~L~ 203 (291)
T 1h6t_A 129 -GLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQ-ISDIVP-LAGLTKLQNLYLSKNHISDLRA-LAGLKNLD 203 (291)
T ss_dssp -GGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSC-CCCCGG-GTTCTTCCEEECCSSCCCBCGG-GTTCTTCS
T ss_pred -hhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCc-cccchh-hcCCCccCEEECCCCcCCCChh-hccCCCCC
Confidence 6999999999999 44 8888 589999999999999998 888876 9999999999999999999874 88899999
Q ss_pred cCCceEecCCC
Q 037953 227 TLSEFVVASGG 237 (625)
Q Consensus 227 ~L~~~~~~~~~ 237 (625)
.|++..+....
T Consensus 204 ~L~l~~n~i~~ 214 (291)
T 1h6t_A 204 VLELFSQECLN 214 (291)
T ss_dssp EEEEEEEEEEC
T ss_pred EEECcCCcccC
Confidence 99988765443
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
Probab=99.43 E-value=1e-13 Score=126.55 Aligned_cols=131 Identities=22% Similarity=0.142 Sum_probs=66.3
Q ss_pred CCceEEEEEEcCCCC--cchhhhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhh-h
Q 037953 71 PEKLRHLMLVLGYEA--PSLVSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNE-I 147 (625)
Q Consensus 71 ~~~lr~L~l~~~~~~--~~~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~-l 147 (625)
++++++|++.+|.+. .+|..+..+++|++|++++|. +... + .+..+++|++|+++ +|.+.. +
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~--l~~~-~----~~~~l~~L~~L~Ls--------~N~l~~~~ 87 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG--LISV-S----NLPKLPKLKKLELS--------ENRIFGGL 87 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC--CCCC-S----SCCCCSSCCEEEEE--------SCCCCSCC
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC--CCCh-h----hhccCCCCCEEECc--------CCcCchHH
Confidence 345555555555554 455545555555555555543 1111 1 24555555555555 555443 4
Q ss_pred hcccccccccceecC-CC-CCCCc--hhhcCCCCCceEeecCCCCCCcccc----ccccccccceEEecCcccccccc
Q 037953 148 LNGVEKLIHLRYLKL-NL-VGDLP--EKCCELLNLQTLELENSSHFKRFPQ----GIGKLINLRHLIFTEDLLEYMPK 217 (625)
Q Consensus 148 p~~~~~L~~L~~L~L-~~-l~~lP--~~i~~L~~L~~L~L~~~~~l~~lp~----~l~~L~~L~~L~l~~~~l~~lp~ 217 (625)
|..+.++++|++|++ ++ +..+| ..+..+++|++|++++|. +..+|. .+..+++|++|++..+...++|.
T Consensus 88 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 164 (168)
T 2ell_A 88 DMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDREDQEAPD 164 (168)
T ss_dssp CHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEETTSCBCCS
T ss_pred HHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCCChhhccc
Confidence 444444555555555 22 55544 445555555555555555 444444 35555555555554444444443
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.41 E-value=3.2e-13 Score=129.10 Aligned_cols=146 Identities=18% Similarity=0.153 Sum_probs=110.8
Q ss_pred EEEEEEcCCCCcchhhhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhhhc-cccc
Q 037953 75 RHLMLVLGYEAPSLVSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEILN-GVEK 153 (625)
Q Consensus 75 r~L~l~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp~-~~~~ 153 (625)
+.++++++.+..+|..+. +.+++|++++|. +....| ...|..+++|++|+|+ +|.+..++. .|..
T Consensus 14 ~~l~~s~n~l~~iP~~~~--~~~~~L~L~~N~--l~~~~~--~~~~~~l~~L~~L~L~--------~N~i~~i~~~~~~~ 79 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHIP--QYTAELRLNNNE--FTVLEA--TGIFKKLPQLRKINFS--------NNKITDIEEGAFEG 79 (220)
T ss_dssp TEEECCSSCCSSCCSCCC--TTCSEEECCSSC--CCEECC--CCCGGGCTTCCEEECC--------SSCCCEECTTTTTT
T ss_pred CEeEeCCCCcccCccCCC--CCCCEEEcCCCc--CCccCc--hhhhccCCCCCEEECC--------CCcCCEECHHHhCC
Confidence 367788888888887553 467889999875 333322 0457888999999999 888777754 6888
Q ss_pred ccccceecC-CC-CCCCch-hhcCCCCCceEeecCCCCCCcc-ccccccccccceEEecCcccccc-cccCCCccccccC
Q 037953 154 LIHLRYLKL-NL-VGDLPE-KCCELLNLQTLELENSSHFKRF-PQGIGKLINLRHLIFTEDLLEYM-PKGIEKLTSLRTL 228 (625)
Q Consensus 154 L~~L~~L~L-~~-l~~lP~-~i~~L~~L~~L~L~~~~~l~~l-p~~l~~L~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L 228 (625)
+++|++|+| ++ +..+|. .+.++++|++|+|++|. +..+ |..+..+++|++|+++.|.++.+ |..+..+++|+.|
T Consensus 80 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 158 (220)
T 2v70_A 80 ASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNR-ITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTL 158 (220)
T ss_dssp CTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSC-CCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEE
T ss_pred CCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCc-CCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEE
Confidence 999999999 44 777765 48889999999999998 7666 56688889999999988888877 5667888888888
Q ss_pred CceEecC
Q 037953 229 SEFVVAS 235 (625)
Q Consensus 229 ~~~~~~~ 235 (625)
++..+..
T Consensus 159 ~L~~N~l 165 (220)
T 2v70_A 159 NLLANPF 165 (220)
T ss_dssp ECCSCCE
T ss_pred EecCcCC
Confidence 7665543
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.41 E-value=6e-13 Score=130.90 Aligned_cols=145 Identities=17% Similarity=0.122 Sum_probs=107.6
Q ss_pred CCceEEEEEEcCCCCcchhhhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhhhcc
Q 037953 71 PEKLRHLMLVLGYEAPSLVSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEILNG 150 (625)
Q Consensus 71 ~~~lr~L~l~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp~~ 150 (625)
..+++.|++.+|.+..++ .+..+++|++|++++|. ...+| . +.++++|++|+++ +|.+..+|.
T Consensus 40 l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~---i~~~~---~-l~~l~~L~~L~L~--------~N~l~~l~~- 102 (263)
T 1xeu_A 40 LSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQ---ISDLS---P-LKDLTKLEELSVN--------RNRLKNLNG- 102 (263)
T ss_dssp HTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSC---CCCCG---G-GTTCSSCCEEECC--------SSCCSCCTT-
T ss_pred cCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCc---cCCCh---h-hccCCCCCEEECC--------CCccCCcCc-
Confidence 457788888888777776 57778888888888865 33444 4 7788888888888 777777764
Q ss_pred cccccccceecC-CC-CCCCchhhcCCCCCceEeecCCCCCCccccccccccccceEEecCcccccccccCCCccccccC
Q 037953 151 VEKLIHLRYLKL-NL-VGDLPEKCCELLNLQTLELENSSHFKRFPQGIGKLINLRHLIFTEDLLEYMPKGIEKLTSLRTL 228 (625)
Q Consensus 151 ~~~L~~L~~L~L-~~-l~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~l~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L 228 (625)
+.. ++|++|++ ++ +..+| .+.++++|++|++++|. ++.+| .++.+++|++|++++|.+..+ ..+..+++|+.|
T Consensus 103 ~~~-~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~-i~~~~-~l~~l~~L~~L~L~~N~i~~~-~~l~~l~~L~~L 177 (263)
T 1xeu_A 103 IPS-ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNK-LKSIV-MLGFLSKLEVLDLHGNEITNT-GGLTRLKKVNWI 177 (263)
T ss_dssp CCC-SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSC-CCBCG-GGGGCTTCCEEECTTSCCCBC-TTSTTCCCCCEE
T ss_pred ccc-CcccEEEccCCccCCCh-hhcCcccccEEECCCCc-CCCCh-HHccCCCCCEEECCCCcCcch-HHhccCCCCCEE
Confidence 333 78888888 33 77775 58888888888888887 77775 678888888888877777777 567777778877
Q ss_pred CceEecCCC
Q 037953 229 SEFVVASGG 237 (625)
Q Consensus 229 ~~~~~~~~~ 237 (625)
++..+....
T Consensus 178 ~l~~N~~~~ 186 (263)
T 1xeu_A 178 DLTGQKCVN 186 (263)
T ss_dssp EEEEEEEEC
T ss_pred eCCCCcccC
Confidence 776665443
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.40 E-value=3.1e-13 Score=128.01 Aligned_cols=126 Identities=25% Similarity=0.348 Sum_probs=66.7
Q ss_pred CCceEEEEEEcCCCCcchh-hhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhhhc
Q 037953 71 PEKLRHLMLVLGYEAPSLV-SIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEILN 149 (625)
Q Consensus 71 ~~~lr~L~l~~~~~~~~~~-~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp~ 149 (625)
++++++|++++|.+..++. .+..+++|++|++++|. +....+ ..|..+++|++|+++ +|.+..+|.
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~--l~~~~~---~~~~~l~~L~~L~Ls--------~n~l~~~~~ 93 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNK--LQSLPN---GVFNKLTSLTYLNLS--------TNQLQSLPN 93 (208)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC--CCCCCT---TTTTTCTTCCEEECC--------SSCCCCCCT
T ss_pred CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCc--cCccCh---hhcCCCCCcCEEECC--------CCcCCccCH
Confidence 3455566666655544443 24455666666666543 233333 445555666666666 555555443
Q ss_pred c-cccccccceecC-CC-CCCCchh-hcCCCCCceEeecCCCCCCccccc-cccccccceEEecCc
Q 037953 150 G-VEKLIHLRYLKL-NL-VGDLPEK-CCELLNLQTLELENSSHFKRFPQG-IGKLINLRHLIFTED 210 (625)
Q Consensus 150 ~-~~~L~~L~~L~L-~~-l~~lP~~-i~~L~~L~~L~L~~~~~l~~lp~~-l~~L~~L~~L~l~~~ 210 (625)
. |+.+++|++|++ ++ +..+|.. +.++++|++|++++|. ++.+|.. +.++++|++|+++.|
T Consensus 94 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N 158 (208)
T 2o6s_A 94 GVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYIWLHDN 158 (208)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSC
T ss_pred hHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCc-cceeCHHHhccCCCccEEEecCC
Confidence 3 455566666666 22 5555443 4555666666666655 5555443 455556666666444
|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.40 E-value=5.7e-13 Score=134.57 Aligned_cols=195 Identities=16% Similarity=0.040 Sum_probs=130.4
Q ss_pred CceEEEEEEcCCCC-cchhhh--ccCCcceEEEeecccCCccccCchh-hHHHhcCCceeEEEeecCCCccccccchhhh
Q 037953 72 EKLRHLMLVLGYEA-PSLVSI--FNAIKLRSLILFYWIPNLDAMLPVL-KGIFDQLTCLRALRIEGTDNWELEEDQTNEI 147 (625)
Q Consensus 72 ~~lr~L~l~~~~~~-~~~~~~--~~l~~Lr~L~L~~~~~~~~~~lp~~-~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~l 147 (625)
.++++|++.+|.+. ..|..+ ..+++|++|++++|. +....|.+ ...+..+++|++|+|+ +|.+..+
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~--i~~~~~~~~~~~~~~~~~L~~L~Ls--------~n~l~~~ 160 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVS--WATGRSWLAELQQWLKPGLKVLSIA--------QAHSPAF 160 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCC--CSSTTSSHHHHHTTBCSCCCEEEEE--------CCSSCCC
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeeccc--ccchhhhhHHHHhhhccCCCEEEee--------CCCcchh
Confidence 35888888888874 555565 778889999998875 22222200 1234578889999998 8887665
Q ss_pred h-cccccccccceecC--CCCCC---Cchh--hcCCCCCceEeecCCCCCCccccc----cccccccceEEecCcccccc
Q 037953 148 L-NGVEKLIHLRYLKL--NLVGD---LPEK--CCELLNLQTLELENSSHFKRFPQG----IGKLINLRHLIFTEDLLEYM 215 (625)
Q Consensus 148 p-~~~~~L~~L~~L~L--~~l~~---lP~~--i~~L~~L~~L~L~~~~~l~~lp~~----l~~L~~L~~L~l~~~~l~~l 215 (625)
| ..++.+++|++|+| |.+.. +|.. ++++++|++|++++|. ++.+|.. ++.+++|++|++++|.++.+
T Consensus 161 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~ 239 (310)
T 4glp_A 161 SCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTG-METPTGVCAALAAAGVQPHSLDLSHNSLRAT 239 (310)
T ss_dssp CTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSC-CCCHHHHHHHHHHHTCCCSSEECTTSCCCCC
T ss_pred hHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCC-CCchHHHHHHHHhcCCCCCEEECCCCCCCcc
Confidence 4 56888888999998 43432 3322 3688889999998888 7766653 46778899999988888776
Q ss_pred -cccCCCc---cccccCCceEecCCCCcCCCcccChhccccccccccceEEeccCCCCChhHHHHhccCCCCCCCeEEEE
Q 037953 216 -PKGIEKL---TSLRTLSEFVVASGGGRYGSEACKLEGLRHLNHLRGSLKVRGLGNVADVDEVKNAHLEKKKNLVRLILR 291 (625)
Q Consensus 216 -p~~i~~L---~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 291 (625)
|..++.+ ++|++|++..+.... ++..+. ++|+ .|++++..- ... ..+..+++|+.|+++
T Consensus 240 ~p~~~~~~~~~~~L~~L~Ls~N~l~~-----lp~~~~-----~~L~-~L~Ls~N~l-~~~-----~~~~~l~~L~~L~L~ 302 (310)
T 4glp_A 240 VNPSAPRCMWSSALNSLNLSFAGLEQ-----VPKGLP-----AKLR-VLDLSSNRL-NRA-----PQPDELPEVDNLTLD 302 (310)
T ss_dssp CCSCCSSCCCCTTCCCEECCSSCCCS-----CCSCCC-----SCCS-CEECCSCCC-CSC-----CCTTSCCCCSCEECS
T ss_pred chhhHHhccCcCcCCEEECCCCCCCc-----hhhhhc-----CCCC-EEECCCCcC-CCC-----chhhhCCCccEEECc
Confidence 7777766 477777766554443 222221 4555 666665321 111 125677899999998
Q ss_pred Eec
Q 037953 292 FKD 294 (625)
Q Consensus 292 ~~~ 294 (625)
+|.
T Consensus 303 ~N~ 305 (310)
T 4glp_A 303 GNP 305 (310)
T ss_dssp STT
T ss_pred CCC
Confidence 875
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
Probab=99.40 E-value=3.6e-13 Score=147.89 Aligned_cols=141 Identities=17% Similarity=0.186 Sum_probs=88.3
Q ss_pred CceEEEEEEcCCCCcchhhhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhhhccc
Q 037953 72 EKLRHLMLVLGYEAPSLVSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEILNGV 151 (625)
Q Consensus 72 ~~lr~L~l~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp~~~ 151 (625)
.+++.|++.++.+..++ .+..+++|+.|+|++|. ...+| . +..+++|++|+|+ +|.+..+| .+
T Consensus 43 ~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~---l~~~~---~-l~~l~~L~~L~Ls--------~N~l~~l~-~l 105 (605)
T 1m9s_A 43 NSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNK---LTDIK---P-LTNLKNLGWLFLD--------ENKIKDLS-SL 105 (605)
T ss_dssp TTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSC---CCCCG---G-GGGCTTCCEEECC--------SSCCCCCT-TS
T ss_pred CCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCC---CCCCh---h-hccCCCCCEEECc--------CCCCCCCh-hh
Confidence 45666666666665554 45667777777777754 22233 2 6677777777777 66665555 56
Q ss_pred ccccccceecC-CC-CCCCchhhcCCCCCceEeecCCCCCCccccccccccccceEEecCcccccccccCCCccccccCC
Q 037953 152 EKLIHLRYLKL-NL-VGDLPEKCCELLNLQTLELENSSHFKRFPQGIGKLINLRHLIFTEDLLEYMPKGIEKLTSLRTLS 229 (625)
Q Consensus 152 ~~L~~L~~L~L-~~-l~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~l~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~ 229 (625)
..+++|++|+| ++ +..+| .+..+++|+.|+|++|. +..+ ..++.+++|++|++++|.+..++. +..+++|+.|+
T Consensus 106 ~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~-l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~ 181 (605)
T 1m9s_A 106 KDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNK-ITDI-TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLY 181 (605)
T ss_dssp TTCTTCCEEECTTSCCCCCG-GGGGCTTCSEEECCSSC-CCCC-GGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEE
T ss_pred ccCCCCCEEEecCCCCCCCc-cccCCCccCEEECCCCc-cCCc-hhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEE
Confidence 66777777777 33 66653 46667777777777776 6655 456667777777776666666554 56666666665
Q ss_pred ceEe
Q 037953 230 EFVV 233 (625)
Q Consensus 230 ~~~~ 233 (625)
+..+
T Consensus 182 Ls~N 185 (605)
T 1m9s_A 182 LSKN 185 (605)
T ss_dssp CCSS
T ss_pred CcCC
Confidence 5444
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
Probab=99.39 E-value=3.9e-13 Score=122.63 Aligned_cols=130 Identities=20% Similarity=0.207 Sum_probs=111.6
Q ss_pred cCCcceEEEeecccCCcc-ccCchhhHHHhcCCceeEEEeecCCCccccccchhhhhcccccccccceecC--CCCCC-C
Q 037953 93 NAIKLRSLILFYWIPNLD-AMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEILNGVEKLIHLRYLKL--NLVGD-L 168 (625)
Q Consensus 93 ~l~~Lr~L~L~~~~~~~~-~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp~~~~~L~~L~~L~L--~~l~~-l 168 (625)
..++|++|++++|. +. +.+| ..+..+++|++|+++ +|.+..+ ..++.+++|++|++ |.+.. +
T Consensus 22 ~~~~L~~L~l~~n~--l~~~~i~---~~~~~l~~L~~L~l~--------~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~ 87 (168)
T 2ell_A 22 TPAAVRELVLDNCK--SNDGKIE---GLTAEFVNLEFLSLI--------NVGLISV-SNLPKLPKLKKLELSENRIFGGL 87 (168)
T ss_dssp CTTSCSEEECCSCB--CBTTBCS---SCCGGGGGCCEEEEE--------SSCCCCC-SSCCCCSSCCEEEEESCCCCSCC
T ss_pred CcccCCEEECCCCC--CChhhHH---HHHHhCCCCCEEeCc--------CCCCCCh-hhhccCCCCCEEECcCCcCchHH
Confidence 45889999999986 33 3667 778999999999999 8887777 67999999999999 44666 8
Q ss_pred chhhcCCCCCceEeecCCCCCCccc--cccccccccceEEecCcccccccc----cCCCccccccCCceEecCCC
Q 037953 169 PEKCCELLNLQTLELENSSHFKRFP--QGIGKLINLRHLIFTEDLLEYMPK----GIEKLTSLRTLSEFVVASGG 237 (625)
Q Consensus 169 P~~i~~L~~L~~L~L~~~~~l~~lp--~~l~~L~~L~~L~l~~~~l~~lp~----~i~~L~~L~~L~~~~~~~~~ 237 (625)
|..+.++++|++|++++|. ++.+| ..++.+++|++|+++.|.+..+|. .+..+++|+.|++..+....
T Consensus 88 ~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 161 (168)
T 2ell_A 88 DMLAEKLPNLTHLNLSGNK-LKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQE 161 (168)
T ss_dssp CHHHHHCTTCCEEECBSSS-CCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred HHHHhhCCCCCEEeccCCc-cCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhh
Confidence 8888889999999999998 88887 679999999999999999999887 68889999999988776543
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.38 E-value=7.1e-13 Score=127.54 Aligned_cols=131 Identities=25% Similarity=0.332 Sum_probs=114.3
Q ss_pred CCCceEEEEEEcCCCCcc-hhhhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhhh
Q 037953 70 CPEKLRHLMLVLGYEAPS-LVSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEIL 148 (625)
Q Consensus 70 ~~~~lr~L~l~~~~~~~~-~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp 148 (625)
.+.+++.|++++|.+..+ |..+..+++|++|++++|. +....+ ..|..+++|++|+|+ +|.+..+|
T Consensus 38 ~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~--l~~i~~---~~~~~l~~L~~L~Ls--------~N~l~~l~ 104 (229)
T 3e6j_A 38 IPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQ--LGALPV---GVFDSLTQLTVLDLG--------TNQLTVLP 104 (229)
T ss_dssp CCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC--CCCCCT---TTTTTCTTCCEEECC--------SSCCCCCC
T ss_pred CCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCC--CCCcCh---hhcccCCCcCEEECC--------CCcCCccC
Confidence 468999999999999766 6678899999999999976 455555 678999999999999 99988886
Q ss_pred cc-cccccccceecC-CC-CCCCchhhcCCCCCceEeecCCCCCCccccc-cccccccceEEecCccccc
Q 037953 149 NG-VEKLIHLRYLKL-NL-VGDLPEKCCELLNLQTLELENSSHFKRFPQG-IGKLINLRHLIFTEDLLEY 214 (625)
Q Consensus 149 ~~-~~~L~~L~~L~L-~~-l~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~-l~~L~~L~~L~l~~~~l~~ 214 (625)
.. |..+++|++|+| ++ +..+|..+.++++|++|+|++|. +..+|.. +..+++|++|++..|.+..
T Consensus 105 ~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 105 SAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQ-LKSIPHGAFDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp TTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred hhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCc-CCccCHHHHhCCCCCCEEEeeCCCccC
Confidence 54 789999999999 55 99999999999999999999998 8888865 8899999999998887654
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.38 E-value=1.3e-13 Score=135.57 Aligned_cols=131 Identities=18% Similarity=0.104 Sum_probs=77.5
Q ss_pred EEEcCCCCcchhhhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhhhccccccccc
Q 037953 78 MLVLGYEAPSLVSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEILNGVEKLIHL 157 (625)
Q Consensus 78 ~l~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp~~~~~L~~L 157 (625)
.+..+.+..++ .+.++++|++|++++|. ...+| .+..+++|++|+|+ +|.+..+|. ++++++|
T Consensus 25 ~l~~~~i~~~~-~~~~l~~L~~L~l~~n~---i~~l~----~l~~l~~L~~L~L~--------~N~i~~~~~-l~~l~~L 87 (263)
T 1xeu_A 25 NLGKQSVTDLV-SQKELSGVQNFNGDNSN---IQSLA----GMQFFTNLKELHLS--------HNQISDLSP-LKDLTKL 87 (263)
T ss_dssp HHTCSCTTSEE-CHHHHTTCSEEECTTSC---CCCCT----TGGGCTTCCEEECC--------SSCCCCCGG-GTTCSSC
T ss_pred HhcCCCccccc-chhhcCcCcEEECcCCC---cccch----HHhhCCCCCEEECC--------CCccCCChh-hccCCCC
Confidence 33344444444 45566677777777654 22333 25666777777777 666666654 6666777
Q ss_pred ceecC-CC-CCCCchhhcCCCCCceEeecCCCCCCccccccccccccceEEecCcccccccccCCCccccccCCc
Q 037953 158 RYLKL-NL-VGDLPEKCCELLNLQTLELENSSHFKRFPQGIGKLINLRHLIFTEDLLEYMPKGIEKLTSLRTLSE 230 (625)
Q Consensus 158 ~~L~L-~~-l~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~l~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~~ 230 (625)
++|++ ++ +..+|.... ++|++|++++|. ++.+| .++++++|++|++++|.++.+| .++.+++|+.|++
T Consensus 88 ~~L~L~~N~l~~l~~~~~--~~L~~L~L~~N~-l~~~~-~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L 157 (263)
T 1xeu_A 88 EELSVNRNRLKNLNGIPS--ACLSRLFLDNNE-LRDTD-SLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDL 157 (263)
T ss_dssp CEEECCSSCCSCCTTCCC--SSCCEEECCSSC-CSBSG-GGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEEC
T ss_pred CEEECCCCccCCcCcccc--CcccEEEccCCc-cCCCh-hhcCcccccEEECCCCcCCCCh-HHccCCCCCEEEC
Confidence 77777 33 666654322 667777777766 66654 4666677777777666666654 4555555555544
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.38 E-value=2.3e-13 Score=147.82 Aligned_cols=34 Identities=15% Similarity=0.008 Sum_probs=19.7
Q ss_pred CcEEEEeccCCCcccCCchhhcccccccEEEEeCCCC
Q 037953 327 LESLEIAGFRGRKMMLSTNWMASLNMLKKLRLLNCPT 363 (625)
Q Consensus 327 L~~L~L~~~~~~~~~~~p~~l~~l~~L~~L~L~~c~~ 363 (625)
|+.|++++|....+ |.++..+++|+.|+|++|..
T Consensus 209 L~~L~Ls~N~l~~l---p~~l~~l~~L~~L~L~~N~l 242 (571)
T 3cvr_A 209 EIFFRCRENRITHI---PENILSLDPTCTIILEDNPL 242 (571)
T ss_dssp CEEEECCSSCCCCC---CGGGGGSCTTEEEECCSSSC
T ss_pred ceEEecCCCcceec---CHHHhcCCCCCEEEeeCCcC
Confidence 35555655555554 55555566666666666543
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.38 E-value=2.2e-13 Score=147.98 Aligned_cols=180 Identities=14% Similarity=0.161 Sum_probs=115.6
Q ss_pred ceeEEEeecCCCccccccchhhhhcccccccccceecC-CC-CCCCchhhcCCCCCceEeecCCCCCCcccccccccccc
Q 037953 125 CLRALRIEGTDNWELEEDQTNEILNGVEKLIHLRYLKL-NL-VGDLPEKCCELLNLQTLELENSSHFKRFPQGIGKLINL 202 (625)
Q Consensus 125 ~Lr~L~Ls~c~~~~~~~~~l~~lp~~~~~L~~L~~L~L-~~-l~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~l~~L~~L 202 (625)
+|++|+|+ +|.+..+|..+. ++|++|+| ++ +..+| ..+++|++|++++|. ++.+|. +.+ +|
T Consensus 60 ~L~~L~Ls--------~n~L~~lp~~l~--~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~-l~~ip~-l~~--~L 122 (571)
T 3cvr_A 60 QFSELQLN--------RLNLSSLPDNLP--PQITVLEITQNALISLP---ELPASLEYLDACDNR-LSTLPE-LPA--SL 122 (571)
T ss_dssp TCSEEECC--------SSCCSCCCSCCC--TTCSEEECCSSCCSCCC---CCCTTCCEEECCSSC-CSCCCC-CCT--TC
T ss_pred CccEEEeC--------CCCCCccCHhHc--CCCCEEECcCCCCcccc---cccCCCCEEEccCCC-CCCcch-hhc--CC
Confidence 77777777 777666776553 67777777 33 77777 456777777777776 777776 554 77
Q ss_pred ceEEecCcccccccccCCCccccccCCceEecCCCCcCCCcccChhccccccccccceEEeccCCCCChhHHHHhccCCC
Q 037953 203 RHLIFTEDLLEYMPKGIEKLTSLRTLSEFVVASGGGRYGSEACKLEGLRHLNHLRGSLKVRGLGNVADVDEVKNAHLEKK 282 (625)
Q Consensus 203 ~~L~l~~~~l~~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l 282 (625)
++|++++|.++.+|. .+++|+.|++..+.... ++. .+
T Consensus 123 ~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~~-----lp~-----------------------------------~l 159 (571)
T 3cvr_A 123 KHLDVDNNQLTMLPE---LPALLEYINADNNQLTM-----LPE-----------------------------------LP 159 (571)
T ss_dssp CEEECCSSCCSCCCC---CCTTCCEEECCSSCCSC-----CCC-----------------------------------CC
T ss_pred CEEECCCCcCCCCCC---cCccccEEeCCCCccCc-----CCC-----------------------------------cC
Confidence 777777777777765 45556555543322111 000 12
Q ss_pred CCCCeEEEEEecccccccCCcccccccchhhHHHHhhcCCCCCCCcEEEEeccCCCcccCCchhhcccccc-------cE
Q 037953 283 KNLVRLILRFKDIDKAVKRWPEAISNENAAKHEAICEALWPPPNLESLEIAGFRGRKMMLSTNWMASLNML-------KK 355 (625)
Q Consensus 283 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~p~~l~~l~~L-------~~ 355 (625)
++|+.|++++|.++ .++. +. ++|+.|++++|....+ |. +.. +| +.
T Consensus 160 ~~L~~L~Ls~N~L~-------------------~lp~-l~--~~L~~L~Ls~N~L~~l---p~-~~~--~L~~~~~~L~~ 211 (571)
T 3cvr_A 160 TSLEVLSVRNNQLT-------------------FLPE-LP--ESLEALDVSTNLLESL---PA-VPV--RNHHSEETEIF 211 (571)
T ss_dssp TTCCEEECCSSCCS-------------------CCCC-CC--TTCCEEECCSSCCSSC---CC-CC----------CCEE
T ss_pred CCcCEEECCCCCCC-------------------Ccch-hh--CCCCEEECcCCCCCch---hh-HHH--hhhcccccceE
Confidence 45666666665422 1222 22 6788888888877766 66 443 66 99
Q ss_pred EEEeCCCCCCCCCC-CCCCCCcceeeccccccceeeCcc
Q 037953 356 LRLLNCPTCEIMPP-LGQLPSLEILLIKDMTSVERVGDE 393 (625)
Q Consensus 356 L~L~~c~~l~~l~~-l~~l~~L~~L~L~~~~~l~~l~~~ 393 (625)
|++++| .++.+|. +..+++|+.|+|++|+..+.+|..
T Consensus 212 L~Ls~N-~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p~~ 249 (571)
T 3cvr_A 212 FRCREN-RITHIPENILSLDPTCTIILEDNPLSSRIRES 249 (571)
T ss_dssp EECCSS-CCCCCCGGGGGSCTTEEEECCSSSCCHHHHHH
T ss_pred EecCCC-cceecCHHHhcCCCCCEEEeeCCcCCCcCHHH
Confidence 999985 5667774 777999999999998855555544
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=3.8e-15 Score=162.57 Aligned_cols=173 Identities=18% Similarity=0.182 Sum_probs=117.8
Q ss_pred CCceEEEEEEcCCCCcchhhhccCCcceEEEeeccc-----------CCccccCchhhHHHhcCCceeEEE-eecCCCcc
Q 037953 71 PEKLRHLMLVLGYEAPSLVSIFNAIKLRSLILFYWI-----------PNLDAMLPVLKGIFDQLTCLRALR-IEGTDNWE 138 (625)
Q Consensus 71 ~~~lr~L~l~~~~~~~~~~~~~~l~~Lr~L~L~~~~-----------~~~~~~lp~~~~~~~~l~~Lr~L~-Ls~c~~~~ 138 (625)
.+.+++|++++|.+..+|+.+..+++|+.|++++|. ....+.+| ..++.+++|+.|+ ++
T Consensus 348 ~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~---~~l~~l~~L~~L~~l~------ 418 (567)
T 1dce_A 348 DEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEK---ETLQYFSTLKAVDPMR------ 418 (567)
T ss_dssp TTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHH---HHHHHHHHHHHHCGGG------
T ss_pred CccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCH---HHHHHHHhcccCcchh------
Confidence 345567778888888888888888888888876542 01234556 7777888888887 55
Q ss_pred ccccchhhhhc------ccccc--cccceecC-CC-CCCCchhhcCCCCCceEeecCCCCCCccccccccccccceEEec
Q 037953 139 LEEDQTNEILN------GVEKL--IHLRYLKL-NL-VGDLPEKCCELLNLQTLELENSSHFKRFPQGIGKLINLRHLIFT 208 (625)
Q Consensus 139 ~~~~~l~~lp~------~~~~L--~~L~~L~L-~~-l~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~l~~L~~L~~L~l~ 208 (625)
.+.+..++. .+..+ ..|++|+| ++ +..+|. ++++++|++|+|++|. ++.+|..++++++|++|+++
T Consensus 419 --~n~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~Ls 494 (567)
T 1dce_A 419 --AAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNR-LRALPPALAALRCLEVLQAS 494 (567)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSC-CCCCCGGGGGCTTCCEEECC
T ss_pred --hcccchhhhhhhhcccccccCccCceEEEecCCCCCCCcC-ccccccCcEeecCccc-ccccchhhhcCCCCCEEECC
Confidence 444333321 11111 25788888 44 777876 8888888888888887 77888888888888888888
Q ss_pred CcccccccccCCCccccccCCceEecCCCCcCCCcccChhccccccccccceEEec
Q 037953 209 EDLLEYMPKGIEKLTSLRTLSEFVVASGGGRYGSEACKLEGLRHLNHLRGSLKVRG 264 (625)
Q Consensus 209 ~~~l~~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~L~l~~ 264 (625)
+|.++.+| .++.+++|+.|++..+.... . ..+..+..+++|+ .|.+++
T Consensus 495 ~N~l~~lp-~l~~l~~L~~L~Ls~N~l~~-----~-~~p~~l~~l~~L~-~L~L~~ 542 (567)
T 1dce_A 495 DNALENVD-GVANLPRLQELLLCNNRLQQ-----S-AAIQPLVSCPRLV-LLNLQG 542 (567)
T ss_dssp SSCCCCCG-GGTTCSSCCEEECCSSCCCS-----S-STTGGGGGCTTCC-EEECTT
T ss_pred CCCCCCCc-ccCCCCCCcEEECCCCCCCC-----C-CCcHHHhcCCCCC-EEEecC
Confidence 88888887 78888888888776655443 1 1134455555555 566654
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.37 E-value=9e-13 Score=124.81 Aligned_cols=143 Identities=27% Similarity=0.382 Sum_probs=117.6
Q ss_pred EEEEEcCCCCcchhhhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhhhcc-cccc
Q 037953 76 HLMLVLGYEAPSLVSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEILNG-VEKL 154 (625)
Q Consensus 76 ~L~l~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp~~-~~~L 154 (625)
.+...++....+|..+ .++|++|++++|. +....+ ..|.++++|++|+++ +|.+..+|.. |..+
T Consensus 11 ~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~--l~~~~~---~~~~~l~~L~~L~l~--------~n~l~~~~~~~~~~l 75 (208)
T 2o6s_A 11 TVECYSQGRTSVPTGI--PAQTTYLDLETNS--LKSLPN---GVFDELTSLTQLYLG--------GNKLQSLPNGVFNKL 75 (208)
T ss_dssp EEECCSSCCSSCCSCC--CTTCSEEECCSSC--CCCCCT---TTTTTCTTCSEEECC--------SSCCCCCCTTTTTTC
T ss_pred EEEecCCCccCCCCCC--CCCCcEEEcCCCc--cCcCCh---hhhcccccCcEEECC--------CCccCccChhhcCCC
Confidence 4566667777777654 4689999999975 445555 678999999999999 8888888654 7899
Q ss_pred cccceecC-CC-CCCCchh-hcCCCCCceEeecCCCCCCccccc-cccccccceEEecCccccccccc-CCCccccccCC
Q 037953 155 IHLRYLKL-NL-VGDLPEK-CCELLNLQTLELENSSHFKRFPQG-IGKLINLRHLIFTEDLLEYMPKG-IEKLTSLRTLS 229 (625)
Q Consensus 155 ~~L~~L~L-~~-l~~lP~~-i~~L~~L~~L~L~~~~~l~~lp~~-l~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~ 229 (625)
++|++|++ ++ +..+|.. +.++++|++|++++|. ++.+|.. +.++++|++|+++.|.++.+|.. +..+++|+.|+
T Consensus 76 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~ 154 (208)
T 2o6s_A 76 TSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQ-LQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIW 154 (208)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred CCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCc-CcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEE
Confidence 99999999 44 8888765 6899999999999998 8888776 78999999999988999888876 67888888887
Q ss_pred ceEec
Q 037953 230 EFVVA 234 (625)
Q Consensus 230 ~~~~~ 234 (625)
+..+.
T Consensus 155 l~~N~ 159 (208)
T 2o6s_A 155 LHDNP 159 (208)
T ss_dssp CCSCC
T ss_pred ecCCC
Confidence 76553
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
Probab=99.36 E-value=9.4e-13 Score=125.80 Aligned_cols=131 Identities=20% Similarity=0.255 Sum_probs=113.7
Q ss_pred CCCceEEEEEEcCCCCcchh-hhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhhh
Q 037953 70 CPEKLRHLMLVLGYEAPSLV-SIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEIL 148 (625)
Q Consensus 70 ~~~~lr~L~l~~~~~~~~~~-~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp 148 (625)
.+++++.|++.+|.+..+++ .+..+++|++|++++|. +....| ..|.++++|++|+|+ +|.+..+|
T Consensus 30 l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~--i~~~~~---~~~~~l~~L~~L~Ls--------~N~l~~l~ 96 (220)
T 2v9t_B 30 LPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQ--ISELAP---DAFQGLRSLNSLVLY--------GNKITELP 96 (220)
T ss_dssp CCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSC--CCEECT---TTTTTCSSCCEEECC--------SSCCCCCC
T ss_pred cCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCc--CCCcCH---HHhhCCcCCCEEECC--------CCcCCccC
Confidence 45789999999999988765 78899999999999976 556667 889999999999999 99999888
Q ss_pred cc-cccccccceecC-CC-CCCC-chhhcCCCCCceEeecCCCCCCccccc-cccccccceEEecCccccc
Q 037953 149 NG-VEKLIHLRYLKL-NL-VGDL-PEKCCELLNLQTLELENSSHFKRFPQG-IGKLINLRHLIFTEDLLEY 214 (625)
Q Consensus 149 ~~-~~~L~~L~~L~L-~~-l~~l-P~~i~~L~~L~~L~L~~~~~l~~lp~~-l~~L~~L~~L~l~~~~l~~ 214 (625)
.. |..+++|++|+| ++ +..+ |..+.++++|++|+|++|. ++.+|.. +..+++|++|+++.|.+..
T Consensus 97 ~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 97 KSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNK-LQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred HhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCc-CCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 65 789999999999 44 7777 5679999999999999999 8888765 8899999999998887643
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
Probab=99.36 E-value=3.4e-13 Score=120.38 Aligned_cols=123 Identities=24% Similarity=0.250 Sum_probs=89.8
Q ss_pred CCcceEEEeecccCCcc-ccCchhhHHHhcCCceeEEEeecCCCccccccchhhhhcccccccccceecC--CCCCC-Cc
Q 037953 94 AIKLRSLILFYWIPNLD-AMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEILNGVEKLIHLRYLKL--NLVGD-LP 169 (625)
Q Consensus 94 l~~Lr~L~L~~~~~~~~-~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp~~~~~L~~L~~L~L--~~l~~-lP 169 (625)
.++|+.|++++|. +. +.+| ..+..+++|++|+++ +|.+..+ ..++++++|++|++ |.+.. +|
T Consensus 16 ~~~l~~L~l~~n~--l~~~~~~---~~~~~l~~L~~L~l~--------~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~ 81 (149)
T 2je0_A 16 PSDVKELVLDNSR--SNEGKLE---GLTDEFEELEFLSTI--------NVGLTSI-ANLPKLNKLKKLELSDNRVSGGLE 81 (149)
T ss_dssp GGGCSEEECTTCB--CBTTBCC---SCCTTCTTCCEEECT--------TSCCCCC-TTCCCCTTCCEEECCSSCCCSCTH
T ss_pred CccCeEEEccCCc--CChhHHH---HHHhhcCCCcEEECc--------CCCCCCc-hhhhcCCCCCEEECCCCcccchHH
Confidence 4678888888865 23 3556 667778888888888 7776666 56778888888888 33655 77
Q ss_pred hhhcCCCCCceEeecCCCCCCccc--cccccccccceEEecCcccccccc----cCCCccccccCCce
Q 037953 170 EKCCELLNLQTLELENSSHFKRFP--QGIGKLINLRHLIFTEDLLEYMPK----GIEKLTSLRTLSEF 231 (625)
Q Consensus 170 ~~i~~L~~L~~L~L~~~~~l~~lp--~~l~~L~~L~~L~l~~~~l~~lp~----~i~~L~~L~~L~~~ 231 (625)
..++++++|++|++++|. ++.+| ..++.+++|++|++++|.++.+|. .++.+++|+.|++.
T Consensus 82 ~~~~~l~~L~~L~ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 82 VLAEKCPNLTHLNLSGNK-IKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp HHHHHCTTCCEEECTTSC-CCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred HHhhhCCCCCEEECCCCc-CCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 777778888888888887 77665 667888888888887777777765 46667777777653
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.34 E-value=2.7e-12 Score=120.36 Aligned_cols=130 Identities=17% Similarity=0.163 Sum_probs=109.0
Q ss_pred cCCCCceEEEEEEcCCCCcchhhhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhh-
Q 037953 68 NTCPEKLRHLMLVLGYEAPSLVSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNE- 146 (625)
Q Consensus 68 ~~~~~~lr~L~l~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~- 146 (625)
.....+++.|++++|.+..++ .+..+++|++|++++|. +....| ..++.+++|++|+++ +|.+..
T Consensus 62 l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~--l~~~~~---~~l~~l~~L~~L~Ls--------~n~i~~~ 127 (197)
T 4ezg_A 62 IEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKD--VTSDKI---PNLSGLTSLTLLDIS--------HSAHDDS 127 (197)
T ss_dssp GGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTT--CBGGGS---CCCTTCTTCCEEECC--------SSBCBGG
T ss_pred HhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCc--cCcccC---hhhcCCCCCCEEEec--------CCccCcH
Confidence 344678999999999776554 77889999999999975 444445 668999999999999 888664
Q ss_pred hhcccccccccceecC--CC-CCCCchhhcCCCCCceEeecCCCCCCccccccccccccceEEecCccccc
Q 037953 147 ILNGVEKLIHLRYLKL--NL-VGDLPEKCCELLNLQTLELENSSHFKRFPQGIGKLINLRHLIFTEDLLEY 214 (625)
Q Consensus 147 lp~~~~~L~~L~~L~L--~~-l~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~l~~L~~L~~L~l~~~~l~~ 214 (625)
.|..++.+++|++|++ |. +..+| .+..+++|++|++++|. +..++ .+..+++|++|++++|.++.
T Consensus 128 ~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~-i~~~~-~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 128 ILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDG-VHDYR-GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp GHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBC-CCCCT-TGGGCSSCCEEEECBC----
T ss_pred hHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCC-CcChH-HhccCCCCCEEEeeCcccCC
Confidence 6778999999999999 76 89997 79999999999999999 88887 79999999999998887653
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
Probab=99.34 E-value=7.3e-13 Score=121.83 Aligned_cols=128 Identities=21% Similarity=0.219 Sum_probs=90.5
Q ss_pred hccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhhhcccccccccceecC-CC-CCCC
Q 037953 91 IFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEILNGVEKLIHLRYLKL-NL-VGDL 168 (625)
Q Consensus 91 ~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp~~~~~L~~L~~L~L-~~-l~~l 168 (625)
+.++++|++|++++|. ...+| ......++|++|+++ +|.+..+ ..++.+++|++|++ ++ +..+
T Consensus 15 ~~~~~~L~~L~l~~n~---l~~i~---~~~~~~~~L~~L~Ls--------~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~ 79 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYK---IPVIE---NLGATLDQFDAIDFS--------DNEIRKL-DGFPLLRRLKTLLVNNNRICRI 79 (176)
T ss_dssp EECTTSCEEEECTTSC---CCSCC---CGGGGTTCCSEEECC--------SSCCCEE-CCCCCCSSCCEEECCSSCCCEE
T ss_pred cCCcCCceEEEeeCCC---CchhH---HhhhcCCCCCEEECC--------CCCCCcc-cccccCCCCCEEECCCCccccc
Confidence 4566778888888865 22334 433333478888888 7776666 46777888888888 44 7777
Q ss_pred chhh-cCCCCCceEeecCCCCCCcccc--ccccccccceEEecCccccccccc----CCCccccccCCceEec
Q 037953 169 PEKC-CELLNLQTLELENSSHFKRFPQ--GIGKLINLRHLIFTEDLLEYMPKG----IEKLTSLRTLSEFVVA 234 (625)
Q Consensus 169 P~~i-~~L~~L~~L~L~~~~~l~~lp~--~l~~L~~L~~L~l~~~~l~~lp~~----i~~L~~L~~L~~~~~~ 234 (625)
|..+ +.+++|++|++++|. ++.+|. .++.+++|++|++++|.+..+|.. ++.+++|+.|++..+.
T Consensus 80 ~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 80 GEGLDQALPDLTELILTNNS-LVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp CSCHHHHCTTCCEEECCSCC-CCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred CcchhhcCCCCCEEECCCCc-CCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 7554 778888888888887 777776 677888888888877777777764 6777777777765543
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.34 E-value=1.4e-12 Score=124.53 Aligned_cols=130 Identities=14% Similarity=0.147 Sum_probs=111.2
Q ss_pred CCCceEEEEEEcCCCCcchh--hhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhh
Q 037953 70 CPEKLRHLMLVLGYEAPSLV--SIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEI 147 (625)
Q Consensus 70 ~~~~lr~L~l~~~~~~~~~~--~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~l 147 (625)
.+..++.|++++|.+..+++ .+..+++|++|++++|. +....+ ..|.++++|++|+|+ +|.+..+
T Consensus 30 ~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~--i~~i~~---~~~~~l~~L~~L~Ls--------~N~l~~~ 96 (220)
T 2v70_A 30 IPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNK--ITDIEE---GAFEGASGVNEILLT--------SNRLENV 96 (220)
T ss_dssp CCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSC--CCEECT---TTTTTCTTCCEEECC--------SSCCCCC
T ss_pred CCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCc--CCEECH---HHhCCCCCCCEEECC--------CCccCcc
Confidence 45678999999999987743 47899999999999976 455556 689999999999999 9998877
Q ss_pred hc-ccccccccceecC-CC-CCCC-chhhcCCCCCceEeecCCCCCCcc-ccccccccccceEEecCcccc
Q 037953 148 LN-GVEKLIHLRYLKL-NL-VGDL-PEKCCELLNLQTLELENSSHFKRF-PQGIGKLINLRHLIFTEDLLE 213 (625)
Q Consensus 148 p~-~~~~L~~L~~L~L-~~-l~~l-P~~i~~L~~L~~L~L~~~~~l~~l-p~~l~~L~~L~~L~l~~~~l~ 213 (625)
|. .|..+++|++|+| ++ +..+ |..+.++++|++|+|++|. ++.+ |..+..+++|++|+++.|.+.
T Consensus 97 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 97 QHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQ-ITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp CGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSC-CCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred CHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCc-CCEECHHHhcCCCCCCEEEecCcCCc
Confidence 54 4999999999999 44 7766 6789999999999999999 7777 677999999999999888764
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.32 E-value=7.6e-13 Score=136.68 Aligned_cols=126 Identities=21% Similarity=0.166 Sum_probs=55.2
Q ss_pred EEEEcCCCCcchhhhccCCcceEEEeecccCCccccCchhhHHHh-cCCceeEEEeecCCCccccccchhhhh-cccccc
Q 037953 77 LMLVLGYEAPSLVSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFD-QLTCLRALRIEGTDNWELEEDQTNEIL-NGVEKL 154 (625)
Q Consensus 77 L~l~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~-~l~~Lr~L~Ls~c~~~~~~~~~l~~lp-~~~~~L 154 (625)
+++.++.+..+|..+. +.++.|+|++|. +....+ ..|. ++++|++|+|+ +|.+..++ ..|.++
T Consensus 23 l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~--l~~l~~---~~~~~~l~~L~~L~L~--------~N~i~~i~~~~~~~l 87 (361)
T 2xot_A 23 LSCSKQQLPNVPQSLP--SYTALLDLSHNN--LSRLRA---EWTPTRLTNLHSLLLS--------HNHLNFISSEAFVPV 87 (361)
T ss_dssp EECCSSCCSSCCSSCC--TTCSEEECCSSC--CCEECT---TSSSSCCTTCCEEECC--------SSCCCEECTTTTTTC
T ss_pred EEeCCCCcCccCccCC--CCCCEEECCCCC--CCccCh---hhhhhcccccCEEECC--------CCcCCccChhhccCC
Confidence 4444444444443322 234445555432 222222 3333 44555555555 44444443 234445
Q ss_pred cccceecC-CC-CCCCch-hhcCCCCCceEeecCCCCCCcc-ccccccccccceEEecCccccccccc
Q 037953 155 IHLRYLKL-NL-VGDLPE-KCCELLNLQTLELENSSHFKRF-PQGIGKLINLRHLIFTEDLLEYMPKG 218 (625)
Q Consensus 155 ~~L~~L~L-~~-l~~lP~-~i~~L~~L~~L~L~~~~~l~~l-p~~l~~L~~L~~L~l~~~~l~~lp~~ 218 (625)
++|++|+| .+ +..+|. .+.++++|++|+|++|. +..+ |..+.++++|++|++++|.++.+|..
T Consensus 88 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~ 154 (361)
T 2xot_A 88 PNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNH-IVVVDRNAFEDMAQLQKLYLSQNQISRFPVE 154 (361)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCSCCGG
T ss_pred CCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCc-ccEECHHHhCCcccCCEEECCCCcCCeeCHH
Confidence 55555555 22 444432 24445555555555554 4333 22344455555555544444444433
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
Probab=99.30 E-value=7.8e-13 Score=117.99 Aligned_cols=122 Identities=21% Similarity=0.151 Sum_probs=105.8
Q ss_pred CCceEEEEEEcCCCC--cchhhhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhh-h
Q 037953 71 PEKLRHLMLVLGYEA--PSLVSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNE-I 147 (625)
Q Consensus 71 ~~~lr~L~l~~~~~~--~~~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~-l 147 (625)
++++++|++++|.+. .+|..+..+++|++|++++|. +... ..++.+++|++|+++ +|.+.. +
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~--l~~~-----~~~~~l~~L~~L~Ls--------~n~i~~~~ 80 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVG--LTSI-----ANLPKLNKLKKLELS--------DNRVSGGL 80 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSC--CCCC-----TTCCCCTTCCEEECC--------SSCCCSCT
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCC--CCCc-----hhhhcCCCCCEEECC--------CCcccchH
Confidence 578999999999986 788888999999999999976 2332 347899999999999 888776 8
Q ss_pred hcccccccccceecC-CC-CCCCc--hhhcCCCCCceEeecCCCCCCcccc----ccccccccceEEec
Q 037953 148 LNGVEKLIHLRYLKL-NL-VGDLP--EKCCELLNLQTLELENSSHFKRFPQ----GIGKLINLRHLIFT 208 (625)
Q Consensus 148 p~~~~~L~~L~~L~L-~~-l~~lP--~~i~~L~~L~~L~L~~~~~l~~lp~----~l~~L~~L~~L~l~ 208 (625)
|..++.+++|++|++ ++ +..+| ..++.+++|++|++++|. +..+|. .++.+++|++|+++
T Consensus 81 ~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 81 EVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCE-VTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp HHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCG-GGGSTTHHHHHHHHCTTCCEETTB
T ss_pred HHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCc-ccchHHHHHHHHHHCCCcccccCC
Confidence 888888999999999 44 88876 789999999999999998 888876 58999999999874
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.28 E-value=2.2e-12 Score=133.14 Aligned_cols=141 Identities=23% Similarity=0.228 Sum_probs=112.1
Q ss_pred CCCceEEEEEEcCCCCcchhh-hc-cCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhh
Q 037953 70 CPEKLRHLMLVLGYEAPSLVS-IF-NAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEI 147 (625)
Q Consensus 70 ~~~~lr~L~l~~~~~~~~~~~-~~-~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~l 147 (625)
.+..++.|++++|.+..++.. +. ++++|++|+|++|. +....| ..|.++++|++|+|+ +|.+..+
T Consensus 37 ~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~--i~~i~~---~~~~~l~~L~~L~Ls--------~N~l~~~ 103 (361)
T 2xot_A 37 LPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNH--LNFISS---EAFVPVPNLRYLDLS--------SNHLHTL 103 (361)
T ss_dssp CCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSC--CCEECT---TTTTTCTTCCEEECC--------SSCCCEE
T ss_pred CCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCc--CCccCh---hhccCCCCCCEEECC--------CCcCCcC
Confidence 466788999999999777654 44 88999999999965 455556 778999999999999 8888877
Q ss_pred hc-ccccccccceecC-CC-CCCC-chhhcCCCCCceEeecCCCCCCcccccc----ccccccceEEecCccccccccc-
Q 037953 148 LN-GVEKLIHLRYLKL-NL-VGDL-PEKCCELLNLQTLELENSSHFKRFPQGI----GKLINLRHLIFTEDLLEYMPKG- 218 (625)
Q Consensus 148 p~-~~~~L~~L~~L~L-~~-l~~l-P~~i~~L~~L~~L~L~~~~~l~~lp~~l----~~L~~L~~L~l~~~~l~~lp~~- 218 (625)
|. .|..+++|++|+| ++ +..+ |..+.++++|++|+|++|. +..+|..+ ..+++|++|+++.|.++.+|..
T Consensus 104 ~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~ 182 (361)
T 2xot_A 104 DEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQ-ISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTD 182 (361)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCSCCGGGTC----CTTCCEEECCSSCCCCCCHHH
T ss_pred CHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCc-CCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHH
Confidence 65 5889999999999 44 7666 5678999999999999998 88888775 5789999999988888888742
Q ss_pred CCCccc
Q 037953 219 IEKLTS 224 (625)
Q Consensus 219 i~~L~~ 224 (625)
+..++.
T Consensus 183 ~~~l~~ 188 (361)
T 2xot_A 183 LQKLPA 188 (361)
T ss_dssp HHHSCH
T ss_pred hhhccH
Confidence 444444
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=99.26 E-value=2.7e-12 Score=144.44 Aligned_cols=123 Identities=19% Similarity=0.165 Sum_probs=99.3
Q ss_pred CCCCcchhhhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhhhcccccccccceec
Q 037953 82 GYEAPSLVSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEILNGVEKLIHLRYLK 161 (625)
Q Consensus 82 ~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp~~~~~L~~L~~L~ 161 (625)
|.+...+..+..++.|++|+|++|. ...+| ..+.++++|++|+|+ +|.+..+|..|+++++|++|+
T Consensus 211 n~~~~~~~~~~~l~~L~~L~Ls~n~---l~~l~---~~~~~l~~L~~L~Ls--------~N~l~~lp~~~~~l~~L~~L~ 276 (727)
T 4b8c_D 211 NRMVMPKDSKYDDQLWHALDLSNLQ---IFNIS---ANIFKYDFLTRLYLN--------GNSLTELPAEIKNLSNLRVLD 276 (727)
T ss_dssp -----------CCCCCCEEECTTSC---CSCCC---GGGGGCCSCSCCBCT--------TSCCSCCCGGGGGGTTCCEEE
T ss_pred cceecChhhhccCCCCcEEECCCCC---CCCCC---hhhcCCCCCCEEEee--------CCcCcccChhhhCCCCCCEEe
Confidence 3334446678899999999999976 33566 667799999999999 999889999999999999999
Q ss_pred C-CC-CCCCchhhcCCCCCceEeecCCCCCCccccccccccccceEEecCcccccc-cccC
Q 037953 162 L-NL-VGDLPEKCCELLNLQTLELENSSHFKRFPQGIGKLINLRHLIFTEDLLEYM-PKGI 219 (625)
Q Consensus 162 L-~~-l~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~l~~L~~L~~L~l~~~~l~~l-p~~i 219 (625)
| ++ +..+|..+++|++|++|+|++|. ++.+|..|++|++|++|++++|.+... |..+
T Consensus 277 Ls~N~l~~lp~~~~~l~~L~~L~L~~N~-l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~ 336 (727)
T 4b8c_D 277 LSHNRLTSLPAELGSCFQLKYFYFFDNM-VTTLPWEFGNLCNLQFLGVEGNPLEKQFLKIL 336 (727)
T ss_dssp CTTSCCSSCCSSGGGGTTCSEEECCSSC-CCCCCSSTTSCTTCCCEECTTSCCCSHHHHHH
T ss_pred CcCCcCCccChhhcCCCCCCEEECCCCC-CCccChhhhcCCCccEEeCCCCccCCCChHHH
Confidence 9 44 88999999999999999999998 899999999999999999988888754 4334
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
Probab=99.23 E-value=4.9e-12 Score=116.29 Aligned_cols=127 Identities=19% Similarity=0.092 Sum_probs=107.4
Q ss_pred CCceEEEEEEcCCCCcchhhhccCC-cceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhhhc
Q 037953 71 PEKLRHLMLVLGYEAPSLVSIFNAI-KLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEILN 149 (625)
Q Consensus 71 ~~~lr~L~l~~~~~~~~~~~~~~l~-~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp~ 149 (625)
+.+++.|++.+|.+..++. +..+. +|++|++++|. +... + .++.+++|++|+++ +|.+..+|.
T Consensus 18 ~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~--l~~~-~----~l~~l~~L~~L~Ls--------~N~l~~~~~ 81 (176)
T 1a9n_A 18 AVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNE--IRKL-D----GFPLLRRLKTLLVN--------NNRICRIGE 81 (176)
T ss_dssp TTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSC--CCEE-C----CCCCCSSCCEEECC--------SSCCCEECS
T ss_pred cCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCC--CCcc-c----ccccCCCCCEEECC--------CCcccccCc
Confidence 6789999999999987764 44544 99999999986 3332 3 37899999999999 999888886
Q ss_pred c-cccccccceecC-CC-CCCCch--hhcCCCCCceEeecCCCCCCccccc----cccccccceEEecCccccc
Q 037953 150 G-VEKLIHLRYLKL-NL-VGDLPE--KCCELLNLQTLELENSSHFKRFPQG----IGKLINLRHLIFTEDLLEY 214 (625)
Q Consensus 150 ~-~~~L~~L~~L~L-~~-l~~lP~--~i~~L~~L~~L~L~~~~~l~~lp~~----l~~L~~L~~L~l~~~~l~~ 214 (625)
. ++.+++|++|++ ++ +..+|. .+..+++|++|++++|. +..+|.. ++.+++|++|+++.+...+
T Consensus 82 ~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 82 GLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp CHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred chhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence 5 489999999999 55 999997 89999999999999999 8888885 8999999999997665543
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.23 E-value=9.6e-11 Score=119.23 Aligned_cols=287 Identities=12% Similarity=0.087 Sum_probs=150.2
Q ss_pred cCCcceEEEeecccCCccccCchhhHHHhc-CCceeEEEeecCCCccccccchhhhhcccccccccceecC-CCCCCCc-
Q 037953 93 NAIKLRSLILFYWIPNLDAMLPVLKGIFDQ-LTCLRALRIEGTDNWELEEDQTNEILNGVEKLIHLRYLKL-NLVGDLP- 169 (625)
Q Consensus 93 ~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~-l~~Lr~L~Ls~c~~~~~~~~~l~~lp~~~~~L~~L~~L~L-~~l~~lP- 169 (625)
.+.+++.|.++++- ....+ ..+.. +++|++|||+ +|.+......-+.++.++++.+ .. .+|
T Consensus 23 ~~~~l~~L~l~g~i--~~~~~----~~l~~~l~~L~~LdLs--------~n~i~~~~~~~~~~~~~~~~~~~~~--~I~~ 86 (329)
T 3sb4_A 23 EANSITHLTLTGKL--NAEDF----RHLRDEFPSLKVLDIS--------NAEIKMYSGKAGTYPNGKFYIYMAN--FVPA 86 (329)
T ss_dssp HHHHCSEEEEEEEE--CHHHH----HHHHHSCTTCCEEEEE--------EEEECCEEESSSSSGGGCCEEECTT--EECT
T ss_pred hhCceeEEEEeccc--cHHHH----HHHHHhhccCeEEecC--------cceeEEecCcccccccccccccccc--ccCH
Confidence 36788888888742 11111 33445 7889999999 8887622111222333444444 22 233
Q ss_pred hhhcC--------CCCCceEeecCCCCCCccccc-cccccccceEEecCccccccccc-CCCccccccCCceEecCCCCc
Q 037953 170 EKCCE--------LLNLQTLELENSSHFKRFPQG-IGKLINLRHLIFTEDLLEYMPKG-IEKLTSLRTLSEFVVASGGGR 239 (625)
Q Consensus 170 ~~i~~--------L~~L~~L~L~~~~~l~~lp~~-l~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~~~~~~~~~~~ 239 (625)
..+.+ +++|+.|+|.+ . ++.++.. |..+++|+.+++..+.+..++.. +..+.++..+..........
T Consensus 87 ~aF~~~~~~~~~g~~~L~~l~L~~-~-i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~- 163 (329)
T 3sb4_A 87 YAFSNVVNGVTKGKQTLEKVILSE-K-IKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRF- 163 (329)
T ss_dssp TTTEEEETTEEEECTTCCC-CBCT-T-CCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHT-
T ss_pred HHhcccccccccccCCCcEEECCc-c-ccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhc-
Confidence 23556 89999999988 5 8888765 88899999999987877777654 44444444333211000000
Q ss_pred CCCcccChhccccccccccceEEeccCCCCChhHHHHhccCCCCCCCeEEEEEecccccccCCcccccccchhhHHHHhh
Q 037953 240 YGSEACKLEGLRHLNHLRGSLKVRGLGNVADVDEVKNAHLEKKKNLVRLILRFKDIDKAVKRWPEAISNENAAKHEAICE 319 (625)
Q Consensus 240 ~~~~~~~l~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (625)
.....-..+.++..|+..+.+... ...... +..
T Consensus 164 --~~~i~~~~f~~~~~L~~~i~~~~~---~~l~~~------------------------------------------~~~ 196 (329)
T 3sb4_A 164 --KNRWEHFAFIEGEPLETTIQVGAM---GKLEDE------------------------------------------IMK 196 (329)
T ss_dssp --STTTTTSCEEESCCCEEEEEECTT---CCHHHH------------------------------------------HHH
T ss_pred --cccccccccccccccceeEEecCC---CcHHHH------------------------------------------Hhh
Confidence 000000001111112111111111 111111 111
Q ss_pred cCCCCCCCcEEEEeccCCCcccCCchhhc-ccccccEEEEeCCCCCCCCC--CCCCCCCcceeeccccccceeeCccCCC
Q 037953 320 ALWPPPNLESLEIAGFRGRKMMLSTNWMA-SLNMLKKLRLLNCPTCEIMP--PLGQLPSLEILLIKDMTSVERVGDESLG 396 (625)
Q Consensus 320 ~l~~~~~L~~L~L~~~~~~~~~~~p~~l~-~l~~L~~L~L~~c~~l~~l~--~l~~l~~L~~L~L~~~~~l~~l~~~~~~ 396 (625)
.-..+.+++.+.+.+.-.... ...+. .+++|+.+++.+| .++.++ .+..+++|+.+++.++ ++.++...
T Consensus 197 ~~~~~~~~~~l~~~~~l~~~~---~~~l~~~~~~L~~l~L~~n-~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~a-- 268 (329)
T 3sb4_A 197 AGLQPRDINFLTIEGKLDNAD---FKLIRDYMPNLVSLDISKT-NATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRV-- 268 (329)
T ss_dssp TTCCGGGCSEEEEEECCCHHH---HHHHHHHCTTCCEEECTTB-CCCEECTTTTTTCTTCCEEECCTT--CCEECTTT--
T ss_pred cccCccccceEEEeeeecHHH---HHHHHHhcCCCeEEECCCC-CcceecHhhhhCCCCCCEEECCcc--cceehHHH--
Confidence 222234445555544322211 11111 3566666666653 355555 3666777777777663 66666543
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCC-eeeccCcccccccccCCCCcccCCCccEEEEecCCCCCcCCc-CCCCCCCCCEEE
Q 037953 397 IANGDHGAPSSSSVNNIAFPKLK-ELEFSGLQEWEDWDFRKEDITIMPQINSLSIYGCHKLKSLPD-QLLQSSTLKTLR 473 (625)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~l~~L~-~L~L~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~ 473 (625)
+.++++|+ .+.+.+ +++.+. ...+..+++|+.|++.+ +.++.++. .+.++++|+.++
T Consensus 269 ---------------F~~~~~L~~~l~l~~--~l~~I~--~~aF~~c~~L~~l~l~~-n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 269 ---------------FSNCGRLAGTLELPA--SVTAIE--FGAFMGCDNLRYVLATG-DKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp ---------------TTTCTTCCEEEEECT--TCCEEC--TTTTTTCTTEEEEEECS-SCCCEECTTTTCTTCCCCEEE
T ss_pred ---------------hhCChhccEEEEEcc--cceEEc--hhhhhCCccCCEEEeCC-CccCccchhhhcCCcchhhhc
Confidence 45667777 777765 334333 22244678888888877 57777766 345577777765
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=1.4e-11 Score=134.37 Aligned_cols=139 Identities=15% Similarity=0.145 Sum_probs=102.3
Q ss_pred CcchhhhccCCcceEEE-eecccCCccccCch---hhHHHhc--CCceeEEEeecCCCccccccchhhhhcccccccccc
Q 037953 85 APSLVSIFNAIKLRSLI-LFYWIPNLDAMLPV---LKGIFDQ--LTCLRALRIEGTDNWELEEDQTNEILNGVEKLIHLR 158 (625)
Q Consensus 85 ~~~~~~~~~l~~Lr~L~-L~~~~~~~~~~lp~---~~~~~~~--l~~Lr~L~Ls~c~~~~~~~~~l~~lp~~~~~L~~L~ 158 (625)
+..|..+..+++|+.|+ ++.+. ...++. ....+.. ...|++|+|+ +|.+..+|. |+.+++|+
T Consensus 399 ~~~~~~l~~l~~L~~L~~l~~n~---~~~L~~l~l~~n~i~~l~~~~L~~L~Ls--------~n~l~~lp~-~~~l~~L~ 466 (567)
T 1dce_A 399 LYEKETLQYFSTLKAVDPMRAAY---LDDLRSKFLLENSVLKMEYADVRVLHLA--------HKDLTVLCH-LEQLLLVT 466 (567)
T ss_dssp GGHHHHHHHHHHHHHHCGGGHHH---HHHHHHHHHHHHHHHHHHHTTCSEEECT--------TSCCSSCCC-GGGGTTCC
T ss_pred cCCHHHHHHHHhcccCcchhhcc---cchhhhhhhhcccccccCccCceEEEec--------CCCCCCCcC-ccccccCc
Confidence 45566778888888888 45432 111110 0001111 1358889998 888888886 88889999
Q ss_pred eecC-CC-CCCCchhhcCCCCCceEeecCCCCCCccccccccccccceEEecCcccccc--cccCCCccccccCCceEec
Q 037953 159 YLKL-NL-VGDLPEKCCELLNLQTLELENSSHFKRFPQGIGKLINLRHLIFTEDLLEYM--PKGIEKLTSLRTLSEFVVA 234 (625)
Q Consensus 159 ~L~L-~~-l~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~l~~L~~L~~L~l~~~~l~~l--p~~i~~L~~L~~L~~~~~~ 234 (625)
+|+| ++ +..+|..++++++|++|+|++|. ++.+| .++++++|++|++++|.++.+ |..++.+++|+.|++..+.
T Consensus 467 ~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~ 544 (567)
T 1dce_A 467 HLDLSHNRLRALPPALAALRCLEVLQASDNA-LENVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNS 544 (567)
T ss_dssp EEECCSSCCCCCCGGGGGCTTCCEEECCSSC-CCCCG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSG
T ss_pred EeecCcccccccchhhhcCCCCCEEECCCCC-CCCCc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCc
Confidence 9999 44 88888889999999999999988 88888 788899999999988888887 7788888888888877665
Q ss_pred CCC
Q 037953 235 SGG 237 (625)
Q Consensus 235 ~~~ 237 (625)
...
T Consensus 545 l~~ 547 (567)
T 1dce_A 545 LCQ 547 (567)
T ss_dssp GGG
T ss_pred CCC
Confidence 544
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.22 E-value=1.9e-11 Score=114.12 Aligned_cols=122 Identities=16% Similarity=0.139 Sum_probs=91.2
Q ss_pred EEEEEEcCCCCcchhhhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhhh-ccccc
Q 037953 75 RHLMLVLGYEAPSLVSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEIL-NGVEK 153 (625)
Q Consensus 75 r~L~l~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp-~~~~~ 153 (625)
+.+++.++.+..+|..+. ++|++|++++|. ...+| ..|.++++|++|+|+ +|.+..++ ..|.+
T Consensus 13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~---i~~ip---~~~~~l~~L~~L~Ls--------~N~i~~i~~~~f~~ 76 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQ---FTLVP---KELSNYKHLTLIDLS--------NNRISTLSNQSFSN 76 (193)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCCEEECCSSC---CCSCC---GGGGGCTTCCEEECC--------SSCCCCCCTTTTTT
T ss_pred CEEEcCCCCCCcCCCCCC--CCCCEEECCCCc---CchhH---HHhhcccCCCEEECC--------CCcCCEeCHhHccC
Confidence 356666777777776543 678888888875 34566 778888888888888 88877775 45888
Q ss_pred ccccceecC-CC-CCCCch-hhcCCCCCceEeecCCCCCCccccc-cccccccceEEecCcccc
Q 037953 154 LIHLRYLKL-NL-VGDLPE-KCCELLNLQTLELENSSHFKRFPQG-IGKLINLRHLIFTEDLLE 213 (625)
Q Consensus 154 L~~L~~L~L-~~-l~~lP~-~i~~L~~L~~L~L~~~~~l~~lp~~-l~~L~~L~~L~l~~~~l~ 213 (625)
+++|++|+| ++ +..+|. .+..+++|++|+|++|. +..+|.. +..+++|++|+++.|.+.
T Consensus 77 l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 77 MTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGND-ISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCC-CCeeChhhhhcCccccEEEeCCCCee
Confidence 888888888 44 776654 57888888888888887 7777765 777888888888776553
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
Probab=99.20 E-value=1.1e-11 Score=115.73 Aligned_cols=123 Identities=20% Similarity=0.207 Sum_probs=91.5
Q ss_pred EEEEEEcCCCCcchhhhccCCcceEEEeecccCCccccCchhhH-HHhcCCceeEEEeecCCCccccccchhhh-hcccc
Q 037953 75 RHLMLVLGYEAPSLVSIFNAIKLRSLILFYWIPNLDAMLPVLKG-IFDQLTCLRALRIEGTDNWELEEDQTNEI-LNGVE 152 (625)
Q Consensus 75 r~L~l~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~-~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~l-p~~~~ 152 (625)
+.++++++.+..+|..+. ++|++|++++|. +....+ . .|+.+++|++|+|+ +|.+..+ |..|.
T Consensus 11 ~~l~~s~~~l~~ip~~~~--~~l~~L~l~~n~--i~~~~~---~~~~~~l~~L~~L~Ls--------~N~l~~~~~~~~~ 75 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIP--LHTTELLLNDNE--LGRISS---DGLFGRLPHLVKLELK--------RNQLTGIEPNAFE 75 (192)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCSEEECCSCC--CCSBCC---SCSGGGCTTCCEEECC--------SSCCCCBCTTTTT
T ss_pred CEEEcCCCCcCcCccCCC--CCCCEEECCCCc--CCccCC---ccccccCCCCCEEECC--------CCCCCCcCHhHcC
Confidence 567777788888887654 388888888865 333333 2 47888888888888 8887766 66788
Q ss_pred cccccceecC-CC-CCCCch-hhcCCCCCceEeecCCCCCCcc-ccccccccccceEEecCcccc
Q 037953 153 KLIHLRYLKL-NL-VGDLPE-KCCELLNLQTLELENSSHFKRF-PQGIGKLINLRHLIFTEDLLE 213 (625)
Q Consensus 153 ~L~~L~~L~L-~~-l~~lP~-~i~~L~~L~~L~L~~~~~l~~l-p~~l~~L~~L~~L~l~~~~l~ 213 (625)
.+++|++|+| .+ +..+|. .+.++++|++|+|++|. +..+ |..+..+++|++|++++|.+.
T Consensus 76 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 76 GASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQ-ISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp TCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSC-CCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred CcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCc-CCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 8888888888 44 666654 47788888888888888 6654 666888888888888777654
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
Probab=99.19 E-value=5.3e-13 Score=125.35 Aligned_cols=140 Identities=17% Similarity=0.131 Sum_probs=102.4
Q ss_pred ceEEEEEEcC--CCCcchhhhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhhhcc
Q 037953 73 KLRHLMLVLG--YEAPSLVSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEILNG 150 (625)
Q Consensus 73 ~lr~L~l~~~--~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp~~ 150 (625)
.++...+.+. .+..+|..+..+++|++|++++|. ...+| .+.++++|++|+++ +|.+..+|..
T Consensus 24 ~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~---l~~l~----~~~~l~~L~~L~l~--------~n~l~~l~~~ 88 (198)
T 1ds9_A 24 EAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNN---IEKIS----SLSGMENLRILSLG--------RNLIKKIENL 88 (198)
T ss_dssp TCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEE---ESCCC----CHHHHTTCCEEEEE--------EEEECSCSSH
T ss_pred chheeEeccccCcHhhhhHHHhcCCCCCEEECCCCC---Ccccc----ccccCCCCCEEECC--------CCCcccccch
Confidence 4445555443 456677788888888999888875 23344 37788888888888 8888888877
Q ss_pred cccccccceecC-CC-CCCCchhhcCCCCCceEeecCCCCCCcccc--ccccccccceEEecCccccccccc--------
Q 037953 151 VEKLIHLRYLKL-NL-VGDLPEKCCELLNLQTLELENSSHFKRFPQ--GIGKLINLRHLIFTEDLLEYMPKG-------- 218 (625)
Q Consensus 151 ~~~L~~L~~L~L-~~-l~~lP~~i~~L~~L~~L~L~~~~~l~~lp~--~l~~L~~L~~L~l~~~~l~~lp~~-------- 218 (625)
+..+++|++|++ ++ +..+| .++++++|++|++++|. +..+|. .+.++++|++|++++|.+...+..
T Consensus 89 ~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~L~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~ 166 (198)
T 1ds9_A 89 DAVADTLEELWISYNQIASLS-GIEKLVNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYR 166 (198)
T ss_dssp HHHHHHCSEEEEEEEECCCHH-HHHHHHHSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHH
T ss_pred hhcCCcCCEEECcCCcCCcCC-ccccCCCCCEEECCCCc-CCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHH
Confidence 778888888888 44 77776 68888888888888888 777665 578888888888877776554222
Q ss_pred ---CCCccccccCC
Q 037953 219 ---IEKLTSLRTLS 229 (625)
Q Consensus 219 ---i~~L~~L~~L~ 229 (625)
+..+++|+.|+
T Consensus 167 ~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 167 IEVVKRLPNLKKLD 180 (198)
T ss_dssp HHHHHHCSSCSEEC
T ss_pred HHHHHhCCCcEEEC
Confidence 45566666665
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.16 E-value=4.2e-11 Score=111.73 Aligned_cols=121 Identities=19% Similarity=0.216 Sum_probs=99.8
Q ss_pred eEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhhhcccccccccceecC-CC-CCCCch-hhcC
Q 037953 98 RSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEILNGVEKLIHLRYLKL-NL-VGDLPE-KCCE 174 (625)
Q Consensus 98 r~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp~~~~~L~~L~~L~L-~~-l~~lP~-~i~~ 174 (625)
++++++++. ...+| ..+ .++|++|+|+ +|.+..+|..|.++++|++|+| ++ +..++. .+.+
T Consensus 13 ~~l~~~~~~---l~~ip---~~~--~~~l~~L~L~--------~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~ 76 (193)
T 2wfh_A 13 TVVRCSNKG---LKVLP---KGI--PRDVTELYLD--------GNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSN 76 (193)
T ss_dssp TEEECTTSC---CSSCC---SCC--CTTCCEEECC--------SSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred CEEEcCCCC---CCcCC---CCC--CCCCCEEECC--------CCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccC
Confidence 578888765 34455 323 3689999999 9999999989999999999999 44 888864 5899
Q ss_pred CCCCceEeecCCCCCCcccc-ccccccccceEEecCccccccccc-CCCccccccCCceEecC
Q 037953 175 LLNLQTLELENSSHFKRFPQ-GIGKLINLRHLIFTEDLLEYMPKG-IEKLTSLRTLSEFVVAS 235 (625)
Q Consensus 175 L~~L~~L~L~~~~~l~~lp~-~l~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~~~~~~~ 235 (625)
+++|++|+|++|. +..+|. .+..+++|++|+++.|.++.+|.. +..+++|+.|++..+..
T Consensus 77 l~~L~~L~Ls~N~-l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 77 MTQLLTLILSYNR-LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp CTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred CCCCCEEECCCCc-cCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCe
Confidence 9999999999999 888776 489999999999999999999875 77888888887765543
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.15 E-value=6.2e-11 Score=108.91 Aligned_cols=124 Identities=23% Similarity=0.328 Sum_probs=93.2
Q ss_pred EEEEEEcCCCCcchhhhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhhhcc-ccc
Q 037953 75 RHLMLVLGYEAPSLVSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEILNG-VEK 153 (625)
Q Consensus 75 r~L~l~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp~~-~~~ 153 (625)
+.+.+.++.+..+|..+. ++|++|++++|. +....+ ..|+++++|++|+++ +|.+..+|.. ++.
T Consensus 10 ~~l~~~~~~l~~~p~~~~--~~l~~L~l~~n~--l~~~~~---~~~~~l~~L~~L~l~--------~n~l~~~~~~~~~~ 74 (177)
T 2o6r_A 10 TEIRCNSKGLTSVPTGIP--SSATRLELESNK--LQSLPH---GVFDKLTQLTKLSLS--------QNQIQSLPDGVFDK 74 (177)
T ss_dssp TEEECCSSCCSSCCTTCC--TTCSEEECCSSC--CCCCCT---TTTTTCTTCSEEECC--------SSCCCCCCTTTTTT
T ss_pred CEEEecCCCCccCCCCCC--CCCcEEEeCCCc--ccEeCH---HHhcCcccccEEECC--------CCcceEeChhHccC
Confidence 456677777777776543 788899988865 445555 667888899999998 8887777654 678
Q ss_pred ccccceecC-CC-CCCCchh-hcCCCCCceEeecCCCCCCccccc-cccccccceEEecCccccc
Q 037953 154 LIHLRYLKL-NL-VGDLPEK-CCELLNLQTLELENSSHFKRFPQG-IGKLINLRHLIFTEDLLEY 214 (625)
Q Consensus 154 L~~L~~L~L-~~-l~~lP~~-i~~L~~L~~L~L~~~~~l~~lp~~-l~~L~~L~~L~l~~~~l~~ 214 (625)
+++|++|++ ++ +..+|.. +.++++|++|++++|. ++.+|.. +..+++|++|+++.|.+..
T Consensus 75 l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 75 LTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CCccCEEECCCCCccccCHHHhhCCcccCEEECcCCc-ceEeCHHHhcCCcccCEEEecCCCeec
Confidence 888888888 44 7777654 5788888888888887 7777776 4778888888887776544
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
Probab=99.14 E-value=3.4e-11 Score=112.29 Aligned_cols=123 Identities=19% Similarity=0.199 Sum_probs=99.7
Q ss_pred eEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhhhcc--cccccccceecC--CCCCCC-chhh
Q 037953 98 RSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEILNG--VEKLIHLRYLKL--NLVGDL-PEKC 172 (625)
Q Consensus 98 r~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp~~--~~~L~~L~~L~L--~~l~~l-P~~i 172 (625)
++++++++. ...+| ..+. .+|++|+++ +|.+..++.. |+.+++|++|+| |.+..+ |..+
T Consensus 11 ~~l~~s~~~---l~~ip---~~~~--~~l~~L~l~--------~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 74 (192)
T 1w8a_A 11 TTVDCTGRG---LKEIP---RDIP--LHTTELLLN--------DNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAF 74 (192)
T ss_dssp TEEECTTSC---CSSCC---SCCC--TTCSEEECC--------SCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTT
T ss_pred CEEEcCCCC---cCcCc---cCCC--CCCCEEECC--------CCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHc
Confidence 788998875 35555 4332 389999999 9998888753 899999999999 447666 7789
Q ss_pred cCCCCCceEeecCCCCCCccccc-cccccccceEEecCcccccc-cccCCCccccccCCceEecCCC
Q 037953 173 CELLNLQTLELENSSHFKRFPQG-IGKLINLRHLIFTEDLLEYM-PKGIEKLTSLRTLSEFVVASGG 237 (625)
Q Consensus 173 ~~L~~L~~L~L~~~~~l~~lp~~-l~~L~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~~~~~~~~~ 237 (625)
.++++|++|+|++|. +..+|.. +..+++|++|++++|.++.+ |..++.+++|++|++..+....
T Consensus 75 ~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 140 (192)
T 1w8a_A 75 EGASHIQELQLGENK-IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC 140 (192)
T ss_dssp TTCTTCCEEECCSCC-CCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred CCcccCCEEECCCCc-CCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccC
Confidence 999999999999999 8877665 89999999999988888876 5678889999988876655443
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.11 E-value=6.7e-11 Score=120.35 Aligned_cols=282 Identities=11% Similarity=0.011 Sum_probs=164.9
Q ss_pred CCceEEEEEEcCCCCcchhhhcc-CCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhhh-
Q 037953 71 PEKLRHLMLVLGYEAPSLVSIFN-AIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEIL- 148 (625)
Q Consensus 71 ~~~lr~L~l~~~~~~~~~~~~~~-l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp- 148 (625)
..++++|.+.++-...-...+.. +++|++|+|++|........+ +.++.++.+.+. .+. +|
T Consensus 24 ~~~l~~L~l~g~i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~------~~~~~~~~~~~~--------~~~---I~~ 86 (329)
T 3sb4_A 24 ANSITHLTLTGKLNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKA------GTYPNGKFYIYM--------ANF---VPA 86 (329)
T ss_dssp HHHCSEEEEEEEECHHHHHHHHHSCTTCCEEEEEEEEECCEEESS------SSSGGGCCEEEC--------TTE---ECT
T ss_pred hCceeEEEEeccccHHHHHHHHHhhccCeEEecCcceeEEecCcc------cccccccccccc--------ccc---cCH
Confidence 45788999987532222234444 789999999998622112212 223335666666 553 43
Q ss_pred ccccc--------ccccceecC-CCCCCCch-hhcCCCCCceEeecCCCCCCccccc-cccccccceEEecCcc----cc
Q 037953 149 NGVEK--------LIHLRYLKL-NLVGDLPE-KCCELLNLQTLELENSSHFKRFPQG-IGKLINLRHLIFTEDL----LE 213 (625)
Q Consensus 149 ~~~~~--------L~~L~~L~L-~~l~~lP~-~i~~L~~L~~L~L~~~~~l~~lp~~-l~~L~~L~~L~l~~~~----l~ 213 (625)
..|.+ +++|+.|+| ..+..+++ .+.++++|+.|++++|. +..++.. |..+.++..+....+. ..
T Consensus 87 ~aF~~~~~~~~~g~~~L~~l~L~~~i~~I~~~aF~~~~~L~~l~l~~n~-i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~ 165 (329)
T 3sb4_A 87 YAFSNVVNGVTKGKQTLEKVILSEKIKNIEDAAFKGCDNLKICQIRKKT-APNLLPEALADSVTAIFIPLGSSDAYRFKN 165 (329)
T ss_dssp TTTEEEETTEEEECTTCCC-CBCTTCCEECTTTTTTCTTCCEEEBCCSS-CCEECTTSSCTTTCEEEECTTCTHHHHTST
T ss_pred HHhcccccccccccCCCcEEECCccccchhHHHhhcCcccceEEcCCCC-ccccchhhhcCCCceEEecCcchhhhhccc
Confidence 34777 999999999 66877875 48899999999999998 7777665 7777777777664421 11
Q ss_pred ccc-ccCCCccccccCCceEecCCCCcCCCcccC-hhccccccccccceEEeccCCCCChhHHHHhccCCCCCCCeEEEE
Q 037953 214 YMP-KGIEKLTSLRTLSEFVVASGGGRYGSEACK-LEGLRHLNHLRGSLKVRGLGNVADVDEVKNAHLEKKKNLVRLILR 291 (625)
Q Consensus 214 ~lp-~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~-l~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 291 (625)
.+. ..+..+.+|+.. ....... ..+.. ........++. .+.+.+.- . ..........+++|+.+++.
T Consensus 166 ~i~~~~f~~~~~L~~~--i~~~~~~----~l~~~~~~~~~~~~~~~-~l~~~~~l--~--~~~~~~l~~~~~~L~~l~L~ 234 (329)
T 3sb4_A 166 RWEHFAFIEGEPLETT--IQVGAMG----KLEDEIMKAGLQPRDIN-FLTIEGKL--D--NADFKLIRDYMPNLVSLDIS 234 (329)
T ss_dssp TTTTSCEEESCCCEEE--EEECTTC----CHHHHHHHTTCCGGGCS-EEEEEECC--C--HHHHHHHHHHCTTCCEEECT
T ss_pred ccccccccccccccee--EEecCCC----cHHHHHhhcccCccccc-eEEEeeee--c--HHHHHHHHHhcCCCeEEECC
Confidence 111 112233333310 0011000 00000 00111223333 44444321 1 11111112247889999988
Q ss_pred EecccccccCCcccccccchhhHHHHhhcCCCCCCCcEEEEeccCCCcccCCchhhccccccc-EEEEeCCCCCCCCC--
Q 037953 292 FKDIDKAVKRWPEAISNENAAKHEAICEALWPPPNLESLEIAGFRGRKMMLSTNWMASLNMLK-KLRLLNCPTCEIMP-- 368 (625)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~p~~l~~l~~L~-~L~L~~c~~l~~l~-- 368 (625)
.|.++ .--...+..+.+|+.+++.++ ...+. +..+.++++|+ .+.+.+ .++.++
T Consensus 235 ~n~i~------------------~I~~~aF~~~~~L~~l~l~~n-i~~I~--~~aF~~~~~L~~~l~l~~--~l~~I~~~ 291 (329)
T 3sb4_A 235 KTNAT------------------TIPDFTFAQKKYLLKIKLPHN-LKTIG--QRVFSNCGRLAGTLELPA--SVTAIEFG 291 (329)
T ss_dssp TBCCC------------------EECTTTTTTCTTCCEEECCTT-CCEEC--TTTTTTCTTCCEEEEECT--TCCEECTT
T ss_pred CCCcc------------------eecHhhhhCCCCCCEEECCcc-cceeh--HHHhhCChhccEEEEEcc--cceEEchh
Confidence 66421 111235777889999999876 33331 55677889999 999986 566665
Q ss_pred CCCCCCCcceeeccccccceeeCccCCCCCCCCCCCCCCCCCCCCCCCCCCeee
Q 037953 369 PLGQLPSLEILLIKDMTSVERVGDESLGIANGDHGAPSSSSVNNIAFPKLKELE 422 (625)
Q Consensus 369 ~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~ 422 (625)
.+.++++|+.+++..+. ++.++... +.++++|+.++
T Consensus 292 aF~~c~~L~~l~l~~n~-i~~I~~~a-----------------F~~~~~L~~ly 327 (329)
T 3sb4_A 292 AFMGCDNLRYVLATGDK-ITTLGDEL-----------------FGNGVPSKLIY 327 (329)
T ss_dssp TTTTCTTEEEEEECSSC-CCEECTTT-----------------TCTTCCCCEEE
T ss_pred hhhCCccCCEEEeCCCc-cCccchhh-----------------hcCCcchhhhc
Confidence 48889999999987644 77777643 45667777765
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
Probab=99.05 E-value=2.6e-12 Score=120.58 Aligned_cols=105 Identities=19% Similarity=0.256 Sum_probs=88.5
Q ss_pred HHHhcCCceeEEEeecCCCccccccchhhhhcccccccccceecC-CC-CCCCchhhcCCCCCceEeecCCCCCCccccc
Q 037953 118 GIFDQLTCLRALRIEGTDNWELEEDQTNEILNGVEKLIHLRYLKL-NL-VGDLPEKCCELLNLQTLELENSSHFKRFPQG 195 (625)
Q Consensus 118 ~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp~~~~~L~~L~~L~L-~~-l~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~ 195 (625)
..+..+++|++|+++ +|.+..+| .+.++++|++|++ ++ +..+|..+..+++|++|++++|. ++.+| .
T Consensus 42 ~~~~~l~~L~~L~ls--------~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~-l~~l~-~ 110 (198)
T 1ds9_A 42 ATLSTLKACKHLALS--------TNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQ-IASLS-G 110 (198)
T ss_dssp HHHHHTTTCSEEECS--------EEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEE-CCCHH-H
T ss_pred HHHhcCCCCCEEECC--------CCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCc-CCcCC-c
Confidence 589999999999999 88888888 8999999999999 44 88999888888999999999998 88887 6
Q ss_pred cccccccceEEecCcccccccc--cCCCccccccCCceEe
Q 037953 196 IGKLINLRHLIFTEDLLEYMPK--GIEKLTSLRTLSEFVV 233 (625)
Q Consensus 196 l~~L~~L~~L~l~~~~l~~lp~--~i~~L~~L~~L~~~~~ 233 (625)
++++++|++|+++.|.++.+|. .+..+++|++|++..+
T Consensus 111 ~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N 150 (198)
T 1ds9_A 111 IEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGN 150 (198)
T ss_dssp HHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSC
T ss_pred cccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCC
Confidence 8899999999998888887664 4666777777665443
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.02 E-value=6.4e-10 Score=102.08 Aligned_cols=123 Identities=23% Similarity=0.332 Sum_probs=99.2
Q ss_pred ceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhhhcc-cccccccceecC-CC-CCCCchh-h
Q 037953 97 LRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEILNG-VEKLIHLRYLKL-NL-VGDLPEK-C 172 (625)
Q Consensus 97 Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp~~-~~~L~~L~~L~L-~~-l~~lP~~-i 172 (625)
.+.++++++. ...+| . .-.++|++|+++ +|.+..+|.. ++.+++|++|++ ++ +..+|.. +
T Consensus 9 ~~~l~~~~~~---l~~~p---~--~~~~~l~~L~l~--------~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 72 (177)
T 2o6r_A 9 GTEIRCNSKG---LTSVP---T--GIPSSATRLELE--------SNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVF 72 (177)
T ss_dssp TTEEECCSSC---CSSCC---T--TCCTTCSEEECC--------SSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTT
T ss_pred CCEEEecCCC---CccCC---C--CCCCCCcEEEeC--------CCcccEeCHHHhcCcccccEEECCCCcceEeChhHc
Confidence 4678888765 44455 2 334799999999 8888877654 789999999999 44 8888765 6
Q ss_pred cCCCCCceEeecCCCCCCccccc-cccccccceEEecCccccccccc-CCCccccccCCceEecCC
Q 037953 173 CELLNLQTLELENSSHFKRFPQG-IGKLINLRHLIFTEDLLEYMPKG-IEKLTSLRTLSEFVVASG 236 (625)
Q Consensus 173 ~~L~~L~~L~L~~~~~l~~lp~~-l~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~~~~~~~~ 236 (625)
.++++|++|++++|. ++.+|.. +.++++|++|+++.|.++.+|.. +..+++|++|++..+...
T Consensus 73 ~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 73 DKLTKLTILYLHENK-LQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp TTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred cCCCccCEEECCCCC-ccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCee
Confidence 899999999999998 8888776 68999999999999999999876 477888888887655443
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.00 E-value=3.1e-10 Score=103.82 Aligned_cols=76 Identities=20% Similarity=0.391 Sum_probs=38.7
Q ss_pred ccchhhh-hcccccccccceecC-CC-CCCCchh-hcCCCCCceEeecCCCCCCccccc-cccccccceEEecCcccccc
Q 037953 141 EDQTNEI-LNGVEKLIHLRYLKL-NL-VGDLPEK-CCELLNLQTLELENSSHFKRFPQG-IGKLINLRHLIFTEDLLEYM 215 (625)
Q Consensus 141 ~~~l~~l-p~~~~~L~~L~~L~L-~~-l~~lP~~-i~~L~~L~~L~L~~~~~l~~lp~~-l~~L~~L~~L~l~~~~l~~l 215 (625)
+|.+..+ |..|+++++|++|+| ++ +..+|.. +.++++|++|+|++|. +..+|.. +.++++|++|+++.|.+...
T Consensus 42 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~L~~L~L~~N~~~c~ 120 (174)
T 2r9u_A 42 NNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH-LKSIPRGAFDNLKSLTHIYLYNNPWDCE 120 (174)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred CCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc-cceeCHHHhccccCCCEEEeCCCCcccc
Confidence 4444444 333445555555555 22 4444443 3455555555555555 5555544 55555566666655555444
Q ss_pred cc
Q 037953 216 PK 217 (625)
Q Consensus 216 p~ 217 (625)
+.
T Consensus 121 ~~ 122 (174)
T 2r9u_A 121 CR 122 (174)
T ss_dssp BG
T ss_pred cc
Confidence 43
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=98.97 E-value=3.6e-10 Score=103.43 Aligned_cols=109 Identities=23% Similarity=0.228 Sum_probs=93.1
Q ss_pred EEEEEEcCCCCcchhhhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhhhcc-ccc
Q 037953 75 RHLMLVLGYEAPSLVSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEILNG-VEK 153 (625)
Q Consensus 75 r~L~l~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp~~-~~~ 153 (625)
+.++++++.+..+|..+. ++|++|++++|. +....| ..|.++++|++|+|+ +|.+..+|.. |.+
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~--l~~~~~---~~~~~l~~L~~L~Ls--------~N~l~~i~~~~~~~ 79 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQ--ITKLEP---GVFDHLVNLQQLYFN--------SNKLTAIPTGVFDK 79 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSC--CCCCCT---TTTTTCTTCCEEECC--------SSCCCCCCTTTTTT
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCC--ccccCH---HHhcCCcCCCEEECC--------CCCCCccChhHhCC
Confidence 578888899999998764 899999999975 566667 889999999999999 9999999865 689
Q ss_pred ccccceecC-CC-CCCCchh-hcCCCCCceEeecCCCCCCccccccccc
Q 037953 154 LIHLRYLKL-NL-VGDLPEK-CCELLNLQTLELENSSHFKRFPQGIGKL 199 (625)
Q Consensus 154 L~~L~~L~L-~~-l~~lP~~-i~~L~~L~~L~L~~~~~l~~lp~~l~~L 199 (625)
+++|++|+| ++ +..+|.. +.++++|++|+|++|. +...|..+..+
T Consensus 80 l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~-~~c~~~~~~~l 127 (174)
T 2r9u_A 80 LTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNP-WDCECRDIMYL 127 (174)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-BCTTBGGGHHH
T ss_pred cchhhEEECCCCccceeCHHHhccccCCCEEEeCCCC-cccccccHHHH
Confidence 999999999 54 9999876 8999999999999998 77776655444
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
Probab=98.91 E-value=1.7e-09 Score=98.51 Aligned_cols=81 Identities=25% Similarity=0.406 Sum_probs=41.4
Q ss_pred CceeEEEeecCCCccccccchhhh-hcccccccccceecC-CC-CCCCchh-hcCCCCCceEeecCCCCCCccccc-ccc
Q 037953 124 TCLRALRIEGTDNWELEEDQTNEI-LNGVEKLIHLRYLKL-NL-VGDLPEK-CCELLNLQTLELENSSHFKRFPQG-IGK 198 (625)
Q Consensus 124 ~~Lr~L~Ls~c~~~~~~~~~l~~l-p~~~~~L~~L~~L~L-~~-l~~lP~~-i~~L~~L~~L~L~~~~~l~~lp~~-l~~ 198 (625)
++|++|+|+ +|.+..+ |..|.++++|++|+| ++ +..+|.. +.++++|++|+|++|. +..+|.. +.+
T Consensus 30 ~~l~~L~L~--------~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~ 100 (170)
T 3g39_A 30 TTTQVLYLY--------DNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ-LKSIPRGAFDN 100 (170)
T ss_dssp TTCSEEECC--------SSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTT
T ss_pred CCCcEEEcC--------CCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCc-cCEeCHHHhcC
Confidence 445555555 4544444 333455555555555 22 4444443 3455555555555555 5555543 555
Q ss_pred ccccceEEecCcccc
Q 037953 199 LINLRHLIFTEDLLE 213 (625)
Q Consensus 199 L~~L~~L~l~~~~l~ 213 (625)
+++|++|+++.|.+.
T Consensus 101 l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 101 LKSLTHIWLLNNPWD 115 (170)
T ss_dssp CTTCCEEECCSSCBC
T ss_pred CCCCCEEEeCCCCCC
Confidence 555555555555443
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
Probab=98.88 E-value=1e-09 Score=99.94 Aligned_cols=104 Identities=23% Similarity=0.270 Sum_probs=88.1
Q ss_pred EEEEEEcCCCCcchhhhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhhhcc-ccc
Q 037953 75 RHLMLVLGYEAPSLVSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEILNG-VEK 153 (625)
Q Consensus 75 r~L~l~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp~~-~~~ 153 (625)
+.++++++.+..+|..+. ++|++|++++|. +....| ..|.++++|++|+|+ +|.+..+|.. |..
T Consensus 12 ~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~--i~~~~~---~~~~~l~~L~~L~Ls--------~N~l~~l~~~~f~~ 76 (170)
T 3g39_A 12 TTVDCSGKSLASVPTGIP--TTTQVLYLYDNQ--ITKLEP---GVFDRLTQLTRLDLD--------NNQLTVLPAGVFDK 76 (170)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCSEEECCSSC--CCCCCT---TTTTTCTTCSEEECC--------SSCCCCCCTTTTTT
T ss_pred CEEEeCCCCcCccCccCC--CCCcEEEcCCCc--CCccCh---hhhcCcccCCEEECC--------CCCcCccChhhccC
Confidence 578888899988987664 899999999975 556667 889999999999999 9998888765 789
Q ss_pred ccccceecC-CC-CCCCchh-hcCCCCCceEeecCCCCCCcccc
Q 037953 154 LIHLRYLKL-NL-VGDLPEK-CCELLNLQTLELENSSHFKRFPQ 194 (625)
Q Consensus 154 L~~L~~L~L-~~-l~~lP~~-i~~L~~L~~L~L~~~~~l~~lp~ 194 (625)
+++|++|+| ++ +..+|.. +.++++|++|+|++|. +...+.
T Consensus 77 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-~~c~c~ 119 (170)
T 3g39_A 77 LTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNP-WDCACS 119 (170)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-BCTTBG
T ss_pred CCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCC-CCCCch
Confidence 999999999 54 8888875 8899999999999998 654443
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Probab=98.76 E-value=2.7e-07 Score=96.02 Aligned_cols=109 Identities=11% Similarity=0.099 Sum_probs=61.1
Q ss_pred chhhcccccccEEEEeCCCCC----CCCC--CCCCCCCcceeeccccccceeeCccCCCCCCCCCCCCCCCCCCCCCCCC
Q 037953 344 TNWMASLNMLKKLRLLNCPTC----EIMP--PLGQLPSLEILLIKDMTSVERVGDESLGIANGDHGAPSSSSVNNIAFPK 417 (625)
Q Consensus 344 p~~l~~l~~L~~L~L~~c~~l----~~l~--~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ 417 (625)
+..+..+++|+.+.+.++... ..++ .+..+++|+.+.|.+ .++.++... ..++++
T Consensus 264 ~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~--~i~~I~~~a-----------------F~~c~~ 324 (401)
T 4fdw_A 264 SRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE--SIRILGQGL-----------------LGGNRK 324 (401)
T ss_dssp TTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT--TCCEECTTT-----------------TTTCCS
T ss_pred hhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC--ceEEEhhhh-----------------hcCCCC
Confidence 445556667777777653321 1233 366677777777763 366665543 456677
Q ss_pred CCeeeccCcccccccccCCCCcccCCCccEEEEecCCCCCcCCcC-CCCC-CCCCEEEEecC
Q 037953 418 LKELEFSGLQEWEDWDFRKEDITIMPQINSLSIYGCHKLKSLPDQ-LLQS-STLKTLRINRC 477 (625)
Q Consensus 418 L~~L~L~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~-~~~l-~~L~~L~l~~c 477 (625)
|+.+.+.. +++.+. ...+..+ +|+.+.+.++ .+..++.. +..+ .+++.|.+-..
T Consensus 325 L~~l~lp~--~l~~I~--~~aF~~~-~L~~l~l~~n-~~~~l~~~~F~~~~~~l~~l~vp~~ 380 (401)
T 4fdw_A 325 VTQLTIPA--NVTQIN--FSAFNNT-GIKEVKVEGT-TPPQVFEKVWYGFPDDITVIRVPAE 380 (401)
T ss_dssp CCEEEECT--TCCEEC--TTSSSSS-CCCEEEECCS-SCCBCCCSSCCCSCTTCCEEEECGG
T ss_pred ccEEEECc--cccEEc--HHhCCCC-CCCEEEEcCC-CCcccccccccCCCCCccEEEeCHH
Confidence 77777753 233332 2223456 7888888774 45555433 2233 35666666554
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Probab=98.69 E-value=1.3e-07 Score=98.49 Aligned_cols=244 Identities=11% Similarity=0.108 Sum_probs=144.3
Q ss_pred CCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhhhc-ccccccccceecC-CCCCCCc-h
Q 037953 94 AIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEILN-GVEKLIHLRYLKL-NLVGDLP-E 170 (625)
Q Consensus 94 l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp~-~~~~L~~L~~L~L-~~l~~lP-~ 170 (625)
+..++.+.+... +....+ .+|.++ +|+.+.+. .+ +..|+. +|.+ .+|+.+.+ +.+..++ .
T Consensus 112 ~~~l~~i~ip~~---i~~I~~---~aF~~~-~L~~i~l~--------~~-i~~I~~~aF~~-~~L~~i~lp~~l~~I~~~ 174 (401)
T 4fdw_A 112 LKGYNEIILPNS---VKSIPK---DAFRNS-QIAKVVLN--------EG-LKSIGDMAFFN-STVQEIVFPSTLEQLKED 174 (401)
T ss_dssp CSSCSEEECCTT---CCEECT---TTTTTC-CCSEEECC--------TT-CCEECTTTTTT-CCCCEEECCTTCCEECSS
T ss_pred cCCccEEEECCc---cCEehH---hhcccC-CccEEEeC--------CC-ccEECHHhcCC-CCceEEEeCCCccEehHH
Confidence 456666666553 233333 667775 68888887 44 556643 4666 46888888 6666665 4
Q ss_pred hhcCCCCCceEeecCCCCCCccccccccccccceEEecCccccccccc-CCCccccccCCceEecCCCCcCCCcccChhc
Q 037953 171 KCCELLNLQTLELENSSHFKRFPQGIGKLINLRHLIFTEDLLEYMPKG-IEKLTSLRTLSEFVVASGGGRYGSEACKLEG 249 (625)
Q Consensus 171 ~i~~L~~L~~L~L~~~~~l~~lp~~l~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~ 249 (625)
.+.++.+|+.+++.+|. +..+|.......+|+.+.+..+ ++.++.. +.++++|+.+.+... ... -.-..
T Consensus 175 aF~~c~~L~~l~l~~n~-l~~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~-------I~~~a 244 (401)
T 4fdw_A 175 IFYYCYNLKKADLSKTK-ITKLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VST-------IGQEA 244 (401)
T ss_dssp TTTTCTTCCEEECTTSC-CSEECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCE-------ECTTT
T ss_pred HhhCcccCCeeecCCCc-ceEechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccC-------ccccc
Confidence 57788889999988887 8888877544688888888533 6666543 667777777664311 000 00111
Q ss_pred cccccccccceEEeccCCCCChhHHHHhccCCCCCCCeEEEEEecccccccCCcccccccchhhHHHHhhcCCCCCCCcE
Q 037953 250 LRHLNHLRGSLKVRGLGNVADVDEVKNAHLEKKKNLVRLILRFKDIDKAVKRWPEAISNENAAKHEAICEALWPPPNLES 329 (625)
Q Consensus 250 l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~ 329 (625)
+.+ ..|+ .+.+.. + +.......+.++++|+.+.+..+... ... ...--...+..|++|+.
T Consensus 245 F~~-~~L~-~i~lp~--~---i~~I~~~aF~~c~~L~~l~l~~~~~~-----~~~--------~~~I~~~aF~~c~~L~~ 304 (401)
T 4fdw_A 245 FRE-SGIT-TVKLPN--G---VTNIASRAFYYCPELAEVTTYGSTFN-----DDP--------EAMIHPYCLEGCPKLAR 304 (401)
T ss_dssp TTT-CCCS-EEEEET--T---CCEECTTTTTTCTTCCEEEEESSCCC-----CCT--------TCEECTTTTTTCTTCCE
T ss_pred ccc-CCcc-EEEeCC--C---ccEEChhHhhCCCCCCEEEeCCcccc-----CCc--------ccEECHHHhhCCccCCe
Confidence 122 2343 454432 1 11222345778888888888765310 000 00011234667788888
Q ss_pred EEEeccCCCcccCCchhhcccccccEEEEeCCCCCCCCC--CCCCCCCcceeeccccccceeeC
Q 037953 330 LEIAGFRGRKMMLSTNWMASLNMLKKLRLLNCPTCEIMP--PLGQLPSLEILLIKDMTSVERVG 391 (625)
Q Consensus 330 L~L~~~~~~~~~~~p~~l~~l~~L~~L~L~~c~~l~~l~--~l~~l~~L~~L~L~~~~~l~~l~ 391 (625)
+.+.+. ...+. ...+.++++|+.+.|.. .+..++ .+..+ +|+.+.+.++. ...++
T Consensus 305 l~l~~~-i~~I~--~~aF~~c~~L~~l~lp~--~l~~I~~~aF~~~-~L~~l~l~~n~-~~~l~ 361 (401)
T 4fdw_A 305 FEIPES-IRILG--QGLLGGNRKVTQLTIPA--NVTQINFSAFNNT-GIKEVKVEGTT-PPQVF 361 (401)
T ss_dssp ECCCTT-CCEEC--TTTTTTCCSCCEEEECT--TCCEECTTSSSSS-CCCEEEECCSS-CCBCC
T ss_pred EEeCCc-eEEEh--hhhhcCCCCccEEEECc--cccEEcHHhCCCC-CCCEEEEcCCC-Ccccc
Confidence 888743 33321 45566788888888854 355554 36667 88888887754 33343
|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.68 E-value=1.4e-07 Score=98.16 Aligned_cols=304 Identities=12% Similarity=0.058 Sum_probs=163.7
Q ss_pred hhhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhhh-cccccccccceecC-CCCC
Q 037953 89 VSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEIL-NGVEKLIHLRYLKL-NLVG 166 (625)
Q Consensus 89 ~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp-~~~~~L~~L~~L~L-~~l~ 166 (625)
.+|.+|.+|+++.+..+ +...-. .+|.+|++|+.+++. .+ +..++ .+|.++.+|+.+.+ ..+.
T Consensus 65 ~AF~~c~~L~~i~lp~~---i~~I~~---~aF~~c~~L~~i~lp--------~~-l~~I~~~aF~~c~~L~~i~~p~~l~ 129 (394)
T 4fs7_A 65 AAFQGCRKVTEIKIPST---VREIGE---FAFENCSKLEIINIP--------DS-VKMIGRCTFSGCYALKSILLPLMLK 129 (394)
T ss_dssp TTTTTCTTEEEEECCTT---CCEECT---TTTTTCTTCCEECCC--------TT-CCEECTTTTTTCTTCCCCCCCTTCC
T ss_pred HHhhCCCCceEEEeCCC---ccCcch---hHhhCCCCCcEEEeC--------CC-ceEccchhhcccccchhhcccCcee
Confidence 36788999999998753 233333 679999999999997 43 44553 35888888888887 5555
Q ss_pred CCch-hhcCCCCCceEeecCCCCCCccc-cccccccccceEEecCcccccccc-cCCCccccccCCceEecCCCCcCCCc
Q 037953 167 DLPE-KCCELLNLQTLELENSSHFKRFP-QGIGKLINLRHLIFTEDLLEYMPK-GIEKLTSLRTLSEFVVASGGGRYGSE 243 (625)
Q Consensus 167 ~lP~-~i~~L~~L~~L~L~~~~~l~~lp-~~l~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~~~~~~~~~~~~~~~ 243 (625)
.+.. .+.++..++...... +..+. ..|.++++|+.+.+..+ +..++. .+..+.+|+.+.+... ... -.
T Consensus 130 ~i~~~aF~~~~~~~~~~~~~---~~~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~-~~~----I~ 200 (394)
T 4fs7_A 130 SIGVEAFKGCDFKEITIPEG---VTVIGDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN-LKI----IR 200 (394)
T ss_dssp EECTTTTTTCCCSEEECCTT---CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT-CCE----EC
T ss_pred eecceeeecccccccccCcc---ccccchhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC-ceE----eC
Confidence 4443 244443333332222 22332 23677788888887433 234443 3566677776654211 000 00
Q ss_pred ccChhccccccccccceEEeccCCCCChhHHHHhccCCCCCCCeEEEEEecccccccCCcccccccchhhHHHHhhcCCC
Q 037953 244 ACKLEGLRHLNHLRGSLKVRGLGNVADVDEVKNAHLEKKKNLVRLILRFKDIDKAVKRWPEAISNENAAKHEAICEALWP 323 (625)
Q Consensus 244 ~~~l~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 323 (625)
......+..|. .+.+... ... ..........|+.+.+.... . .--...+..
T Consensus 201 ~~~F~~~~~L~----~i~~~~~--~~~----i~~~~~~~~~l~~i~ip~~~---------~----------~i~~~~f~~ 251 (394)
T 4fs7_A 201 DYCFAECILLE----NMEFPNS--LYY----LGDFALSKTGVKNIIIPDSF---------T----------ELGKSVFYG 251 (394)
T ss_dssp TTTTTTCTTCC----BCCCCTT--CCE----ECTTTTTTCCCCEEEECTTC---------C----------EECSSTTTT
T ss_pred chhhccccccc----eeecCCC--ceE----eehhhcccCCCceEEECCCc---------e----------ecccccccc
Confidence 11222222222 2221110 000 01112334566666654220 0 001123455
Q ss_pred CCCCcEEEEeccCCCcccCCchhhcccccccEEEEeCCCCCCCCC--CCCCCCCcceeeccccccceeeCccCCCCCCCC
Q 037953 324 PPNLESLEIAGFRGRKMMLSTNWMASLNMLKKLRLLNCPTCEIMP--PLGQLPSLEILLIKDMTSVERVGDESLGIANGD 401 (625)
Q Consensus 324 ~~~L~~L~L~~~~~~~~~~~p~~l~~l~~L~~L~L~~c~~l~~l~--~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~ 401 (625)
+..|+.+.+..+..... ...+..+..++.+...... ++ .+..+.+|+.+.+.+ .++.++...
T Consensus 252 ~~~l~~~~~~~~~~~i~---~~~F~~~~~l~~~~~~~~~----i~~~~F~~~~~L~~i~l~~--~i~~I~~~a------- 315 (394)
T 4fs7_A 252 CTDLESISIQNNKLRIG---GSLFYNCSGLKKVIYGSVI----VPEKTFYGCSSLTEVKLLD--SVKFIGEEA------- 315 (394)
T ss_dssp CSSCCEEEECCTTCEEC---SCTTTTCTTCCEEEECSSE----ECTTTTTTCTTCCEEEECT--TCCEECTTT-------
T ss_pred cccceeEEcCCCcceee---ccccccccccceeccCcee----ecccccccccccccccccc--ccceechhh-------
Confidence 67777777765433322 4455566777777665421 22 355677788777754 366665432
Q ss_pred CCCCCCCCCCCCCCCCCCeeeccCcccccccccCCCCcccCCCccEEEEecCCCCCcCCc-CCCCCCCCCEEEEecC
Q 037953 402 HGAPSSSSVNNIAFPKLKELEFSGLQEWEDWDFRKEDITIMPQINSLSIYGCHKLKSLPD-QLLQSSTLKTLRINRC 477 (625)
Q Consensus 402 ~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~l~~c 477 (625)
...+.+|+.+.+.+ +++.+. ...+..+++|+.+.+.. .++.|+. .+..+++|+.+++...
T Consensus 316 ----------F~~c~~L~~i~lp~--~v~~I~--~~aF~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 316 ----------FESCTSLVSIDLPY--LVEEIG--KRSFRGCTSLSNINFPL--SLRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp ----------TTTCTTCCEECCCT--TCCEEC--TTTTTTCTTCCEECCCT--TCCEECTTTBTTCTTCCEEEEEGG
T ss_pred ----------hcCCCCCCEEEeCC--cccEEh--HHhccCCCCCCEEEECc--cccEehHHHhhCCCCCCEEEECCC
Confidence 45667777777753 233332 22244677888887765 3666654 3455778888887654
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=98.58 E-value=4.1e-08 Score=100.41 Aligned_cols=91 Identities=16% Similarity=0.157 Sum_probs=53.5
Q ss_pred cccCchhhHHHhcCCceeEEEeecCCCccccc-cchhhhh-cccccccccceecC-CC-CCCCch-hhcCCCCCceEeec
Q 037953 110 DAMLPVLKGIFDQLTCLRALRIEGTDNWELEE-DQTNEIL-NGVEKLIHLRYLKL-NL-VGDLPE-KCCELLNLQTLELE 184 (625)
Q Consensus 110 ~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~-~~l~~lp-~~~~~L~~L~~L~L-~~-l~~lP~-~i~~L~~L~~L~L~ 184 (625)
...+| . +..+++|++|+|+ + |.+..+| ..|+.+++|++|+| ++ +..+|. .+.+|++|++|+|+
T Consensus 21 l~~ip---~-l~~~~~L~~L~l~--------~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 21 LDSLH---H-LPGAENLTELYIE--------NQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp CTTTT---T-SCSCSCCSEEECC--------SCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred CCccC---C-CCCCCCeeEEEcc--------CCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 33455 5 6666667777776 5 5566554 34666666666666 33 555443 45666666666666
Q ss_pred CCCCCCccccccccccccceEEecCcccc
Q 037953 185 NSSHFKRFPQGIGKLINLRHLIFTEDLLE 213 (625)
Q Consensus 185 ~~~~l~~lp~~l~~L~~L~~L~l~~~~l~ 213 (625)
+|. +..+|..+.....|++|++.+|.+.
T Consensus 89 ~N~-l~~~~~~~~~~~~L~~l~l~~N~~~ 116 (347)
T 2ifg_A 89 FNA-LESLSWKTVQGLSLQELVLSGNPLH 116 (347)
T ss_dssp SSC-CSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred CCc-cceeCHHHcccCCceEEEeeCCCcc
Confidence 666 6666655333333666666555544
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=98.51 E-value=1.2e-07 Score=97.03 Aligned_cols=97 Identities=21% Similarity=0.070 Sum_probs=57.1
Q ss_pred EEEEcC-CCCcchhhhccCCcceEEEeec-ccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhhh-ccccc
Q 037953 77 LMLVLG-YEAPSLVSIFNAIKLRSLILFY-WIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEIL-NGVEK 153 (625)
Q Consensus 77 L~l~~~-~~~~~~~~~~~l~~Lr~L~L~~-~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp-~~~~~ 153 (625)
+++.++ .+..+|. +..+++|++|+|++ |. +....| ..|.++++|++|+|+ +|.+..+| ..|++
T Consensus 13 v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~--l~~~~~---~~~~~l~~L~~L~l~--------~N~l~~~~~~~~~~ 78 (347)
T 2ifg_A 13 LRCTRDGALDSLHH-LPGAENLTELYIENQQH--LQHLEL---RDLRGLGELRNLTIV--------KSGLRFVAPDAFHF 78 (347)
T ss_dssp EECCSSCCCTTTTT-SCSCSCCSEEECCSCSS--CCEECG---GGSCSCCCCSEEECC--------SSCCCEECTTGGGS
T ss_pred EEcCCCCCCCccCC-CCCCCCeeEEEccCCCC--CCCcCh---hHhccccCCCEEECC--------CCccceeCHHHhcC
Confidence 344554 5566666 66666666666664 43 334444 556666666666666 66655553 34666
Q ss_pred ccccceecC-CC-CCCCchhhcCCCCCceEeecCCC
Q 037953 154 LIHLRYLKL-NL-VGDLPEKCCELLNLQTLELENSS 187 (625)
Q Consensus 154 L~~L~~L~L-~~-l~~lP~~i~~L~~L~~L~L~~~~ 187 (625)
+++|++|+| ++ +..+|..+.....|++|+|.+|.
T Consensus 79 l~~L~~L~l~~N~l~~~~~~~~~~~~L~~l~l~~N~ 114 (347)
T 2ifg_A 79 TPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNP 114 (347)
T ss_dssp CSCCCEEECCSSCCSCCCSTTTCSCCCCEEECCSSC
T ss_pred CcCCCEEeCCCCccceeCHHHcccCCceEEEeeCCC
Confidence 666666666 33 66666554443346666666665
|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.50 E-value=8.1e-07 Score=92.43 Aligned_cols=321 Identities=10% Similarity=0.034 Sum_probs=173.5
Q ss_pred HHHhcCCceeEEEeecCCCccccccchhhhh-cccccccccceecC-CCCCCCch-hhcCCCCCceEeecCCCCCCcccc
Q 037953 118 GIFDQLTCLRALRIEGTDNWELEEDQTNEIL-NGVEKLIHLRYLKL-NLVGDLPE-KCCELLNLQTLELENSSHFKRFPQ 194 (625)
Q Consensus 118 ~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp-~~~~~L~~L~~L~L-~~l~~lP~-~i~~L~~L~~L~L~~~~~l~~lp~ 194 (625)
.+|.+|++|+.+.+. .+ +..|+ .+|.++.+|+.+++ +++..++. .+.++.+|+.+.+..+ +..+..
T Consensus 65 ~AF~~c~~L~~i~lp--------~~-i~~I~~~aF~~c~~L~~i~lp~~l~~I~~~aF~~c~~L~~i~~p~~--l~~i~~ 133 (394)
T 4fs7_A 65 AAFQGCRKVTEIKIP--------ST-VREIGEFAFENCSKLEIINIPDSVKMIGRCTFSGCYALKSILLPLM--LKSIGV 133 (394)
T ss_dssp TTTTTCTTEEEEECC--------TT-CCEECTTTTTTCTTCCEECCCTTCCEECTTTTTTCTTCCCCCCCTT--CCEECT
T ss_pred HHhhCCCCceEEEeC--------CC-ccCcchhHhhCCCCCcEEEeCCCceEccchhhcccccchhhcccCc--eeeecc
Confidence 679999999999997 43 56664 45889999999999 66666654 4677888888776654 444443
Q ss_pred c-cccccccceEEecCccccccc-ccCCCccccccCCceEecCCCCcCCCcccChhccccccccccceEEeccCCCCChh
Q 037953 195 G-IGKLINLRHLIFTEDLLEYMP-KGIEKLTSLRTLSEFVVASGGGRYGSEACKLEGLRHLNHLRGSLKVRGLGNVADVD 272 (625)
Q Consensus 195 ~-l~~L~~L~~L~l~~~~l~~lp-~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~L~l~~~~~~~~~~ 272 (625)
. +.++..++..... ....+. ..+.++++|+.+.+.. .. ....-..+.++..|+ .+.+.. ++.
T Consensus 134 ~aF~~~~~~~~~~~~--~~~~i~~~aF~~c~~L~~i~l~~---~~-----~~I~~~~F~~c~~L~-~i~l~~--~~~--- 197 (394)
T 4fs7_A 134 EAFKGCDFKEITIPE--GVTVIGDEAFATCESLEYVSLPD---SM-----ETLHNGLFSGCGKLK-SIKLPR--NLK--- 197 (394)
T ss_dssp TTTTTCCCSEEECCT--TCCEECTTTTTTCTTCCEEECCT---TC-----CEECTTTTTTCTTCC-BCCCCT--TCC---
T ss_pred eeeecccccccccCc--cccccchhhhcccCCCcEEecCC---cc-----ceeccccccCCCCce-EEEcCC--Cce---
Confidence 3 4444333222221 122232 3366667776655321 10 000111122333333 333211 111
Q ss_pred HHHHhccCCCCCCCeEEEEEecccccccCCcccccccchhhHHHHhhcCCCCCCCcEEEEeccCCCcccCCchhhccccc
Q 037953 273 EVKNAHLEKKKNLVRLILRFKDIDKAVKRWPEAISNENAAKHEAICEALWPPPNLESLEIAGFRGRKMMLSTNWMASLNM 352 (625)
Q Consensus 273 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~p~~l~~l~~ 352 (625)
......+.++..|+.+.+..+. ..+.+.......|+.+.+.......- ...+..+.+
T Consensus 198 ~I~~~~F~~~~~L~~i~~~~~~--------------------~~i~~~~~~~~~l~~i~ip~~~~~i~---~~~f~~~~~ 254 (394)
T 4fs7_A 198 IIRDYCFAECILLENMEFPNSL--------------------YYLGDFALSKTGVKNIIIPDSFTELG---KSVFYGCTD 254 (394)
T ss_dssp EECTTTTTTCTTCCBCCCCTTC--------------------CEECTTTTTTCCCCEEEECTTCCEEC---SSTTTTCSS
T ss_pred EeCchhhccccccceeecCCCc--------------------eEeehhhcccCCCceEEECCCceecc---ccccccccc
Confidence 1112345566666665544221 01111223345777777754322211 344556777
Q ss_pred ccEEEEeCCCCCCCCC--CCCCCCCcceeeccccccceeeCccCCCCCCCCCCCCCCCCCCCCCCCCCCeeeccCccccc
Q 037953 353 LKKLRLLNCPTCEIMP--PLGQLPSLEILLIKDMTSVERVGDESLGIANGDHGAPSSSSVNNIAFPKLKELEFSGLQEWE 430 (625)
Q Consensus 353 L~~L~L~~c~~l~~l~--~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~ 430 (625)
|+.+.+..+ ...+. .+..++.++.+..... .++... ...+.+|+.+.+.+ +++
T Consensus 255 l~~~~~~~~--~~~i~~~~F~~~~~l~~~~~~~~----~i~~~~-----------------F~~~~~L~~i~l~~--~i~ 309 (394)
T 4fs7_A 255 LESISIQNN--KLRIGGSLFYNCSGLKKVIYGSV----IVPEKT-----------------FYGCSSLTEVKLLD--SVK 309 (394)
T ss_dssp CCEEEECCT--TCEECSCTTTTCTTCCEEEECSS----EECTTT-----------------TTTCTTCCEEEECT--TCC
T ss_pred ceeEEcCCC--cceeeccccccccccceeccCce----eecccc-----------------cccccccccccccc--ccc
Confidence 777777653 22222 3556666766665432 133221 45677888888754 233
Q ss_pred ccccCCCCcccCCCccEEEEecCCCCCcCCcC-CCCCCCCCEEEEecCcchhhcccccccccCCCCceEEecCCCCccch
Q 037953 431 DWDFRKEDITIMPQINSLSIYGCHKLKSLPDQ-LLQSSTLKTLRINRCRVLEEHFKKDRSKISHIPDIQIYERGPGFFTL 509 (625)
Q Consensus 431 ~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~-~~~l~~L~~L~l~~c~~L~~~~~~~~~~l~~l~~l~~~~~~~~~~~l 509 (625)
.+. ...+..+++|+.+.+.+ .++.|+.. +.++.+|+.+.+... ++.+....+....+|..+.+......
T Consensus 310 ~I~--~~aF~~c~~L~~i~lp~--~v~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L~~i~lp~~~~~---- 379 (394)
T 4fs7_A 310 FIG--EEAFESCTSLVSIDLPY--LVEEIGKRSFRGCTSLSNINFPLS--LRKIGANAFQGCINLKKVELPKRLEQ---- 379 (394)
T ss_dssp EEC--TTTTTTCTTCCEECCCT--TCCEECTTTTTTCTTCCEECCCTT--CCEECTTTBTTCTTCCEEEEEGGGGG----
T ss_pred eec--hhhhcCCCCCCEEEeCC--cccEEhHHhccCCCCCCEEEECcc--ccEehHHHhhCCCCCCEEEECCCCEE----
Confidence 332 22244678899998864 47777543 456788998888644 55554344555666777766543221
Q ss_pred hhhhccCccccccc
Q 037953 510 MARLISDCLSMMNM 523 (625)
Q Consensus 510 ~~~~i~~c~~L~~l 523 (625)
......+|.+|+.+
T Consensus 380 ~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 380 YRYDFEDTTKFKWI 393 (394)
T ss_dssp GGGGBCTTCEEEEE
T ss_pred hhheecCCCCCcEE
Confidence 22346777777654
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.38 E-value=2.6e-08 Score=102.59 Aligned_cols=150 Identities=15% Similarity=0.089 Sum_probs=82.9
Q ss_pred CCceEEEEEEcCCCCcch-hh----hc-cCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccch
Q 037953 71 PEKLRHLMLVLGYEAPSL-VS----IF-NAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQT 144 (625)
Q Consensus 71 ~~~lr~L~l~~~~~~~~~-~~----~~-~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l 144 (625)
.+.++.|++++|.+.... .. +. ..++|++|+|++|... ..... .....+++|++|+|+ +|.+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~-~~~~~---~l~~~L~~L~~L~Ls--------~n~l 138 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLD-PAGLR---TLLPVFLRARKLGLQ--------LNSL 138 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCC-HHHHH---HTHHHHHTEEEEECC--------SSCC
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCC-HHHHH---HHHHHHHhccHhhcC--------CCCC
Confidence 346777777777764321 12 22 2257778887776421 11122 333455677777877 5554
Q ss_pred hhh-----hccc-ccccccceecC--CCCCC-----CchhhcCCCCCceEeecCCCCCCc-----cccccccccccceEE
Q 037953 145 NEI-----LNGV-EKLIHLRYLKL--NLVGD-----LPEKCCELLNLQTLELENSSHFKR-----FPQGIGKLINLRHLI 206 (625)
Q Consensus 145 ~~l-----p~~~-~~L~~L~~L~L--~~l~~-----lP~~i~~L~~L~~L~L~~~~~l~~-----lp~~l~~L~~L~~L~ 206 (625)
+.. ...+ ...++|++|+| |.++. ++..+..+++|++|+|++|. ++. ++..+...++|++|+
T Consensus 139 ~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~~L~ 217 (372)
T 3un9_A 139 GPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQELN 217 (372)
T ss_dssp CHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSS-CHHHHHHHHHHHGGGCSCCCEEE
T ss_pred CHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCC-CCcHHHHHHHHHHhcCCCcCeEE
Confidence 322 2222 23566777777 33433 44455667777777777776 553 344456667777777
Q ss_pred ecCcccccc-----cccCCCccccccCCceEe
Q 037953 207 FTEDLLEYM-----PKGIEKLTSLRTLSEFVV 233 (625)
Q Consensus 207 l~~~~l~~l-----p~~i~~L~~L~~L~~~~~ 233 (625)
+++|.++.. +..+...++|++|++..+
T Consensus 218 Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N 249 (372)
T 3un9_A 218 VAYNGAGDTAALALARAAREHPSLELLHLYFN 249 (372)
T ss_dssp CCSSCCCHHHHHHHHHHHHHCSSCCEEECTTS
T ss_pred CCCCCCCHHHHHHHHHHHHhCCCCCEEeccCC
Confidence 766666532 222333455555555433
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.32 E-value=1.6e-07 Score=96.71 Aligned_cols=134 Identities=16% Similarity=0.125 Sum_probs=97.0
Q ss_pred CCceEEEEEEcCCCCcc--hhhhccCCcceEEEeecccCCccccCc-hhhHHH-hcCCceeEEEeecCCCccccccchhh
Q 037953 71 PEKLRHLMLVLGYEAPS--LVSIFNAIKLRSLILFYWIPNLDAMLP-VLKGIF-DQLTCLRALRIEGTDNWELEEDQTNE 146 (625)
Q Consensus 71 ~~~lr~L~l~~~~~~~~--~~~~~~l~~Lr~L~L~~~~~~~~~~lp-~~~~~~-~~l~~Lr~L~Ls~c~~~~~~~~~l~~ 146 (625)
..+++.|++++|.+... ..-...+++|++|+|++|.. ..... .+...+ ...++|++|+|+ +|.++.
T Consensus 100 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l--~~~~~~~L~~~L~~~~~~L~~L~Ls--------~n~l~~ 169 (372)
T 3un9_A 100 RHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSL--GPEACKDLRDLLLHDQCQITTLRLS--------NNPLTA 169 (372)
T ss_dssp SSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCC--CHHHHHHHHHHHHSTTCCCCEEECC--------SSCCHH
T ss_pred CCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCC--CHHHHHHHHHHHHhcCCccceeeCC--------CCCCCh
Confidence 36899999999988432 22234567899999999862 22211 111223 356899999999 666543
Q ss_pred -----hhcccccccccceecC--CCCCC-----CchhhcCCCCCceEeecCCCCCCc-----cccccccccccceEEecC
Q 037953 147 -----ILNGVEKLIHLRYLKL--NLVGD-----LPEKCCELLNLQTLELENSSHFKR-----FPQGIGKLINLRHLIFTE 209 (625)
Q Consensus 147 -----lp~~~~~L~~L~~L~L--~~l~~-----lP~~i~~L~~L~~L~L~~~~~l~~-----lp~~l~~L~~L~~L~l~~ 209 (625)
++..+..+++|++|+| |.++. ++..+...++|++|+|++|. ++. ++..+...++|++|++++
T Consensus 170 ~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~-i~~~g~~~l~~~L~~~~~L~~L~Ls~ 248 (372)
T 3un9_A 170 AGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNG-AGDTAALALARAAREHPSLELLHLYF 248 (372)
T ss_dssp HHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSC-CCHHHHHHHHHHHHHCSSCCEEECTT
T ss_pred HHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCC-CCHHHHHHHHHHHHhCCCCCEEeccC
Confidence 5666788999999999 44543 45667888999999999998 764 444566789999999988
Q ss_pred cccccc
Q 037953 210 DLLEYM 215 (625)
Q Consensus 210 ~~l~~l 215 (625)
|.++..
T Consensus 249 N~i~~~ 254 (372)
T 3un9_A 249 NELSSE 254 (372)
T ss_dssp SSCCHH
T ss_pred CCCCHH
Confidence 887653
|
| >4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} | Back alignment and structure |
|---|
Probab=98.18 E-value=1.9e-05 Score=81.97 Aligned_cols=122 Identities=13% Similarity=0.156 Sum_probs=82.6
Q ss_pred hhccCC-cceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccc---hhhhh-cccccccccceecC-C
Q 037953 90 SIFNAI-KLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQ---TNEIL-NGVEKLIHLRYLKL-N 163 (625)
Q Consensus 90 ~~~~l~-~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~---l~~lp-~~~~~L~~L~~L~L-~ 163 (625)
+|.+++ .|+++.+... ....-. .+|.+|.+|+.+.+. .+. +..+. .+|..+.+|+.+.+ .
T Consensus 58 aF~~~~~~L~sI~iP~s---vt~Ig~---~AF~~C~~L~~i~~~--------~n~p~~l~~Ig~~aF~~c~~L~~i~~~~ 123 (394)
T 4gt6_A 58 VFCNYKYVLTSVQIPDT---VTEIGS---NAFYNCTSLKRVTIQ--------DNKPSCVKKIGRQAFMFCSELTDIPILD 123 (394)
T ss_dssp TTTTCCSCCCEEEECTT---CCEECT---TTTTTCTTCCEEEEG--------GGCCCCCCEECTTTTTTCTTCCBCGGGT
T ss_pred hccCCCCcCEEEEECCC---eeEEhH---HHhhCCccCceEeec--------CCCCCeeeEechhhchhcccceeeccCC
Confidence 566674 5899988763 233333 779999999999998 542 55664 35888899999888 6
Q ss_pred CCCCCch-hhcCCCCCceEeecCCCCCCccccc-cccccccceEEecCcccccccccCCCccccccC
Q 037953 164 LVGDLPE-KCCELLNLQTLELENSSHFKRFPQG-IGKLINLRHLIFTEDLLEYMPKGIEKLTSLRTL 228 (625)
Q Consensus 164 ~l~~lP~-~i~~L~~L~~L~L~~~~~l~~lp~~-l~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L 228 (625)
.+..++. .+..+.+|+.+.+..+ +..++.. +..+.+|+.+.+..+ ++.+....-...+|+.+
T Consensus 124 ~~~~I~~~aF~~c~~L~~i~lp~~--~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~~~l~~i 187 (394)
T 4gt6_A 124 SVTEIDSEAFHHCEELDTVTIPEG--VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTGTALTQI 187 (394)
T ss_dssp TCSEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCCCSEE
T ss_pred ccceehhhhhhhhcccccccccce--eeeecccceecccccccccccce-eeEeccccccccceeEE
Confidence 6666654 4678899999998754 4555544 778888998888433 44554433233445444
|
| >4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} | Back alignment and structure |
|---|
Probab=98.13 E-value=0.00012 Score=75.89 Aligned_cols=120 Identities=13% Similarity=0.097 Sum_probs=62.8
Q ss_pred ceEEEEEEcCCCCcch-hhhccCCcceEEEeecccCC-ccccCchhhHHHhcCCceeEEEeecCCCccccccchhhhh-c
Q 037953 73 KLRHLMLVLGYEAPSL-VSIFNAIKLRSLILFYWIPN-LDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEIL-N 149 (625)
Q Consensus 73 ~lr~L~l~~~~~~~~~-~~~~~l~~Lr~L~L~~~~~~-~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp-~ 149 (625)
.++.+.+..+ ...+. .+|.+|++|+.+.+..+... ....-. .+|..+.+|+.+.+. .+ +..++ .
T Consensus 65 ~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~---~aF~~c~~L~~i~~~--------~~-~~~I~~~ 131 (394)
T 4gt6_A 65 VLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGR---QAFMFCSELTDIPIL--------DS-VTEIDSE 131 (394)
T ss_dssp CCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECT---TTTTTCTTCCBCGGG--------TT-CSEECTT
T ss_pred cCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEech---hhchhcccceeeccC--------Cc-cceehhh
Confidence 3555555432 33332 35666777777776654322 122222 556666666665554 22 33343 2
Q ss_pred ccccccccceecC-CCCCCCch-hhcCCCCCceEeecCCCCCCccccccccccccceEEe
Q 037953 150 GVEKLIHLRYLKL-NLVGDLPE-KCCELLNLQTLELENSSHFKRFPQGIGKLINLRHLIF 207 (625)
Q Consensus 150 ~~~~L~~L~~L~L-~~l~~lP~-~i~~L~~L~~L~L~~~~~l~~lp~~l~~L~~L~~L~l 207 (625)
+|..+.+|+.+.+ ..+..++. .+..+.+|+.+.+..+ +..+........+|+.+.+
T Consensus 132 aF~~c~~L~~i~lp~~~~~I~~~~F~~c~~L~~i~~~~~--~~~I~~~aF~~~~l~~i~i 189 (394)
T 4gt6_A 132 AFHHCEELDTVTIPEGVTSVADGMFSYCYSLHTVTLPDS--VTAIEERAFTGTALTQIHI 189 (394)
T ss_dssp TTTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCCCSEEEE
T ss_pred hhhhhcccccccccceeeeecccceecccccccccccce--eeEeccccccccceeEEEE
Confidence 3666677777777 44444432 3556666777666543 4445444223345666665
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
Probab=98.00 E-value=1.5e-06 Score=78.19 Aligned_cols=69 Identities=13% Similarity=0.183 Sum_probs=43.7
Q ss_pred CCCCCCCCeeeccCcccccccccCCCCccc----CCCccEEEEecCCCCCc--CCcCCCCCCCCCEEEEecCcchhhc
Q 037953 412 NIAFPKLKELEFSGLQEWEDWDFRKEDITI----MPQINSLSIYGCHKLKS--LPDQLLQSSTLKTLRINRCRVLEEH 483 (625)
Q Consensus 412 ~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~----l~~L~~L~l~~c~~l~~--lp~~~~~l~~L~~L~l~~c~~L~~~ 483 (625)
+..+++|+.|+|++|..+++..+.. +.. .++|++|+|++|+++++ +. .+.++++|++|++++|+.+++.
T Consensus 81 L~~~~~L~~L~L~~C~~ItD~gL~~--L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~-~L~~~~~L~~L~L~~c~~Itd~ 155 (176)
T 3e4g_A 81 MEGLQYVEKIRLCKCHYIEDGCLER--LSQLENLQKSMLEMEIISCGNVTDKGII-ALHHFRNLKYLFLSDLPGVKEK 155 (176)
T ss_dssp GTTCSCCCEEEEESCTTCCHHHHHH--HHTCHHHHHHCCEEEEESCTTCCHHHHH-HGGGCTTCCEEEEESCTTCCCH
T ss_pred hcCCCCCCEEEeCCCCccCHHHHHH--HHhcccccCCCCEEEcCCCCcCCHHHHH-HHhcCCCCCEEECCCCCCCCch
Confidence 3456667777777666555433221 112 24688888888887765 32 2345788888888888877753
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.97 E-value=7.4e-06 Score=83.61 Aligned_cols=147 Identities=12% Similarity=-0.009 Sum_probs=97.6
Q ss_pred CCceEEEEEEcCCCC----------cchhhhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCcccc
Q 037953 71 PEKLRHLMLVLGYEA----------PSLVSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELE 140 (625)
Q Consensus 71 ~~~lr~L~l~~~~~~----------~~~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~ 140 (625)
.++++.|.+.....+ .+...+..+|+|+.|.+++|.. ..++ . + .+++|+.|+|.
T Consensus 138 l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~---l~l~---~-~-~~~~L~~L~L~-------- 201 (362)
T 2ra8_A 138 FAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNN---LSIG---K-K-PRPNLKSLEII-------- 201 (362)
T ss_dssp HTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBT---CBCC---S-C-BCTTCSEEEEE--------
T ss_pred cchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCC---ceec---c-c-cCCCCcEEEEe--------
Confidence 468999998654321 3455667789999999998731 2334 3 3 38899999999
Q ss_pred ccchh-hhhcccc--cccccceecC--CC---CC-----CCchhh--cCCCCCceEeecCCCCCCc-ccccc---ccccc
Q 037953 141 EDQTN-EILNGVE--KLIHLRYLKL--NL---VG-----DLPEKC--CELLNLQTLELENSSHFKR-FPQGI---GKLIN 201 (625)
Q Consensus 141 ~~~l~-~lp~~~~--~L~~L~~L~L--~~---l~-----~lP~~i--~~L~~L~~L~L~~~~~l~~-lp~~l---~~L~~ 201 (625)
.+.+. +....++ .+++|++|+| +. .. .+...+ ..+++|++|+|++|. +.. .+..+ ..+++
T Consensus 202 ~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~-i~~~~~~~la~a~~~~~ 280 (362)
T 2ra8_A 202 SGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAE-EQNVVVEMFLESDILPQ 280 (362)
T ss_dssp CSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCT-THHHHHHHHHHCSSGGG
T ss_pred cCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCC-CchHHHHHHHhCccCCC
Confidence 55532 2222333 7889999988 21 11 121222 357899999999998 542 22233 35889
Q ss_pred cceEEecCccccc-----ccccCCCccccccCCceEec
Q 037953 202 LRHLIFTEDLLEY-----MPKGIEKLTSLRTLSEFVVA 234 (625)
Q Consensus 202 L~~L~l~~~~l~~-----lp~~i~~L~~L~~L~~~~~~ 234 (625)
|++|++++|.++. ++.++..+++|+.|++..+.
T Consensus 281 L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 281 LETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp CSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred CCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCc
Confidence 9999998888765 45555667888888876554
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=97.97 E-value=4.5e-06 Score=76.73 Aligned_cols=117 Identities=14% Similarity=0.073 Sum_probs=78.3
Q ss_pred chhhhccCCcceEEEeecc-cCCccccCchhhHHHhcCCceeEEEeecCCCccccccchh-----hhhccccccccccee
Q 037953 87 SLVSIFNAIKLRSLILFYW-IPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTN-----EILNGVEKLIHLRYL 160 (625)
Q Consensus 87 ~~~~~~~l~~Lr~L~L~~~-~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~-----~lp~~~~~L~~L~~L 160 (625)
+...+...+.|++|+|++| .... .....+...+...++|++|+|+ +|.++ .+...+...++|++|
T Consensus 28 l~~~l~~~~~L~~L~L~~n~~i~~-~g~~~l~~~L~~~~~L~~L~Ls--------~n~i~~~g~~~l~~~L~~n~~L~~L 98 (185)
T 1io0_A 28 LKRIQNNDPDLEEVNLNNIMNIPV-PTLKACAEALKTNTYVKKFSIV--------GTRSNDPVAFALAEMLKVNNTLKSL 98 (185)
T ss_dssp HHHHHTTCTTCCEEECTTCTTCCH-HHHHHHHHHHTTCCSCCEEECT--------TSCCCHHHHHHHHHHHHHCSSCCEE
T ss_pred HHHHHhcCCCCCEEEecCCCCCCH-HHHHHHHHHHHhCCCcCEEECc--------CCCCChHHHHHHHHHHHhCCCcCEE
Confidence 3455667888999999887 4211 1111122566778889999999 55543 345556667788888
Q ss_pred cC--CCCCC-----CchhhcCCCCCceEee--cCCCCCCc-----cccccccccccceEEecCcccc
Q 037953 161 KL--NLVGD-----LPEKCCELLNLQTLEL--ENSSHFKR-----FPQGIGKLINLRHLIFTEDLLE 213 (625)
Q Consensus 161 ~L--~~l~~-----lP~~i~~L~~L~~L~L--~~~~~l~~-----lp~~l~~L~~L~~L~l~~~~l~ 213 (625)
+| |.++. +...+...++|++|+| ++|. ++. +...+...++|++|+++.|.++
T Consensus 99 ~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~-i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 99 NVESNFISGSGILALVEALQSNTSLIELRIDNQSQP-LGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp ECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSC-CCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred ECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCC-CCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 88 33554 4566777888999999 7777 653 3344566688888888777654
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.92 E-value=5.7e-06 Score=84.44 Aligned_cols=178 Identities=15% Similarity=0.108 Sum_probs=104.2
Q ss_pred CCceEEEEEEcCCCC---------cchhhhccCCcceEEEeecccCC---c----cccCchhhHHHhcCCceeEEEeecC
Q 037953 71 PEKLRHLMLVLGYEA---------PSLVSIFNAIKLRSLILFYWIPN---L----DAMLPVLKGIFDQLTCLRALRIEGT 134 (625)
Q Consensus 71 ~~~lr~L~l~~~~~~---------~~~~~~~~l~~Lr~L~L~~~~~~---~----~~~lp~~~~~~~~l~~Lr~L~Ls~c 134 (625)
+.+++.|.+...... .+..+..++++|+.|.+...... + ...++ ..+..+++|+.|+|+
T Consensus 106 ~~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~---~ll~~~P~L~~L~L~-- 180 (362)
T 2ra8_A 106 LPSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLS---PVLDAMPLLNNLKIK-- 180 (362)
T ss_dssp GGGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCH---HHHHTCTTCCEEEEE--
T ss_pred chhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHH---HHHhcCCCCcEEEEe--
Confidence 345666666543332 23455678899999999764211 1 12355 778999999999999
Q ss_pred CCccccccchhhhhcccccccccceecC-CC-CCC-Cchhhc--CCCCCceEeecCCC-------CCCcccccc--cccc
Q 037953 135 DNWELEEDQTNEILNGVEKLIHLRYLKL-NL-VGD-LPEKCC--ELLNLQTLELENSS-------HFKRFPQGI--GKLI 200 (625)
Q Consensus 135 ~~~~~~~~~l~~lp~~~~~L~~L~~L~L-~~-l~~-lP~~i~--~L~~L~~L~L~~~~-------~l~~lp~~l--~~L~ 200 (625)
++.-..++. + .+++|+.|+| +. +.. ....+. ++++|++|+|+.+. .+..+...+ ..++
T Consensus 181 ------g~~~l~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p 252 (362)
T 2ra8_A 181 ------GTNNLSIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFP 252 (362)
T ss_dssp ------CCBTCBCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCT
T ss_pred ------CCCCceecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCC
Confidence 543123443 4 3889999999 43 422 112333 79999999996421 122222222 3578
Q ss_pred ccceEEecCccccc-cccc---CCCccccccCCceEecCCCCcCCCcccChhccccccccccceEEecc
Q 037953 201 NLRHLIFTEDLLEY-MPKG---IEKLTSLRTLSEFVVASGGGRYGSEACKLEGLRHLNHLRGSLKVRGL 265 (625)
Q Consensus 201 ~L~~L~l~~~~l~~-lp~~---i~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~L~l~~~ 265 (625)
+|++|++.++.+.. .+.. ...+++|++|+++.+...... .......+.++++|+ .|.++.+
T Consensus 253 ~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G---~~~L~~~L~~l~~L~-~L~L~~n 317 (362)
T 2ra8_A 253 NLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEG---ARLLLDHVDKIKHLK-FINMKYN 317 (362)
T ss_dssp TCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHH---HHHHHTTHHHHTTCS-EEECCSB
T ss_pred CcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHH---HHHHHhhcccCCcce-EEECCCC
Confidence 99999996665542 1111 235788888887544322200 001122345666777 7777654
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
Probab=97.89 E-value=9e-06 Score=73.06 Aligned_cols=86 Identities=9% Similarity=0.133 Sum_probs=65.5
Q ss_pred CCCCeEEEEEecccccccCCcccccccchhhHHHHhhcCCCCCCCcEEEEeccCCCcccCCchhhc---c----cccccE
Q 037953 283 KNLVRLILRFKDIDKAVKRWPEAISNENAAKHEAICEALWPPPNLESLEIAGFRGRKMMLSTNWMA---S----LNMLKK 355 (625)
Q Consensus 283 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~p~~l~---~----l~~L~~ 355 (625)
-+|+.|+++++.++ ..-...+..+++|+.|+|++|...+ ...+. . .++|++
T Consensus 61 ~~L~~LDLs~~~It------------------d~GL~~L~~~~~L~~L~L~~C~~It----D~gL~~L~~~~~~~~~L~~ 118 (176)
T 3e4g_A 61 YKIQAIDATDSCIM------------------SIGFDHMEGLQYVEKIRLCKCHYIE----DGCLERLSQLENLQKSMLE 118 (176)
T ss_dssp CCEEEEEEESCCCC------------------GGGGGGGTTCSCCCEEEEESCTTCC----HHHHHHHHTCHHHHHHCCE
T ss_pred ceEeEEeCcCCCcc------------------HHHHHHhcCCCCCCEEEeCCCCccC----HHHHHHHHhcccccCCCCE
Confidence 47999999987532 3334556789999999999998665 23333 3 247999
Q ss_pred EEEeCCCCCCC--CCCCCCCCCcceeeccccccceee
Q 037953 356 LRLLNCPTCEI--MPPLGQLPSLEILLIKDMTSVERV 390 (625)
Q Consensus 356 L~L~~c~~l~~--l~~l~~l~~L~~L~L~~~~~l~~l 390 (625)
|+|++|..+++ +..+..+++|+.|+|++|+.++..
T Consensus 119 L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~~Itd~ 155 (176)
T 3e4g_A 119 MEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVKEK 155 (176)
T ss_dssp EEEESCTTCCHHHHHHGGGCTTCCEEEEESCTTCCCH
T ss_pred EEcCCCCcCCHHHHHHHhcCCCCCEEECCCCCCCCch
Confidence 99999998876 445678999999999999977653
|
| >4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=97.68 E-value=0.00019 Score=73.85 Aligned_cols=78 Identities=8% Similarity=0.076 Sum_probs=39.4
Q ss_pred ccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhhhc-ccccccccceecC-CCCCCCc
Q 037953 92 FNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEILN-GVEKLIHLRYLKL-NLVGDLP 169 (625)
Q Consensus 92 ~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp~-~~~~L~~L~~L~L-~~l~~lP 169 (625)
....+|+++.+... +..+-. .+|.+|.+|+.++|. .+ +..|++ +|.++ +|+.+.+ .++..++
T Consensus 43 ~~~~~i~~v~ip~~---vt~Ig~---~aF~~C~~L~~I~lp--------~~-v~~Ig~~aF~~c-~l~~i~~~~~l~~I~ 106 (379)
T 4h09_A 43 KDRDRISEVRVNSG---ITSIGE---ANFNSCYNMTKVTVA--------ST-VTSIGDGAFADT-KLQSYTGMERVKKFG 106 (379)
T ss_dssp GGGGGCSEEEECTT---EEEECT---TTTTTCTTCCEEEEC--------TT-CCEECTTTTTTC-CCCEEEECTTCCEEC
T ss_pred ccccCCEEEEeCCC---ccChHH---HHhhCCCCCCEEEeC--------Cc-ceEechhhhcCC-CCceEECCceeeEec
Confidence 34455666666542 122222 556666666666665 32 334432 35444 4555555 4455554
Q ss_pred hhhcCCCCCceEeecC
Q 037953 170 EKCCELLNLQTLELEN 185 (625)
Q Consensus 170 ~~i~~L~~L~~L~L~~ 185 (625)
.......+|+.+.+..
T Consensus 107 ~~aF~~~~L~~i~lp~ 122 (379)
T 4h09_A 107 DYVFQGTDLDDFEFPG 122 (379)
T ss_dssp TTTTTTCCCSEEECCT
T ss_pred cceeccCCcccccCCC
Confidence 4433344566666654
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=97.62 E-value=1.7e-05 Score=72.81 Aligned_cols=105 Identities=14% Similarity=0.131 Sum_probs=74.8
Q ss_pred HHHhcCCceeEEEeecCCCcccccc-ch-----hhhhcccccccccceecC--CCCCC-----CchhhcCCCCCceEeec
Q 037953 118 GIFDQLTCLRALRIEGTDNWELEED-QT-----NEILNGVEKLIHLRYLKL--NLVGD-----LPEKCCELLNLQTLELE 184 (625)
Q Consensus 118 ~~~~~l~~Lr~L~Ls~c~~~~~~~~-~l-----~~lp~~~~~L~~L~~L~L--~~l~~-----lP~~i~~L~~L~~L~L~ 184 (625)
..+...+.|++|+|+ +| .+ ..+...+...++|++|+| |.++. +...+...++|++|+|+
T Consensus 30 ~~l~~~~~L~~L~L~--------~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~ 101 (185)
T 1io0_A 30 RIQNNDPDLEEVNLN--------NIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVE 101 (185)
T ss_dssp HHHTTCTTCCEEECT--------TCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECC
T ss_pred HHHhcCCCCCEEEec--------CCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECc
Confidence 678889999999999 55 43 345667778889999999 44543 44556677889999999
Q ss_pred CCCCCCc-----cccccccccccceEEe--cCccccc-----ccccCCCccccccCCce
Q 037953 185 NSSHFKR-----FPQGIGKLINLRHLIF--TEDLLEY-----MPKGIEKLTSLRTLSEF 231 (625)
Q Consensus 185 ~~~~l~~-----lp~~l~~L~~L~~L~l--~~~~l~~-----lp~~i~~L~~L~~L~~~ 231 (625)
+|. ++. +...+...++|++|++ ++|.++. +...+...++|++|++.
T Consensus 102 ~N~-i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~ 159 (185)
T 1io0_A 102 SNF-ISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYH 159 (185)
T ss_dssp SSC-CCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECC
T ss_pred CCc-CCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEecc
Confidence 998 764 4556777888999999 7787754 22233334555555543
|
| >4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=97.59 E-value=0.0022 Score=65.77 Aligned_cols=79 Identities=11% Similarity=0.176 Sum_probs=53.4
Q ss_pred HHHhcCCceeEEEeecCCCccccccchhhhhc-ccccccccceecC-CCCCCCchh-hcCCCCCceEeecCCCCCCcccc
Q 037953 118 GIFDQLTCLRALRIEGTDNWELEEDQTNEILN-GVEKLIHLRYLKL-NLVGDLPEK-CCELLNLQTLELENSSHFKRFPQ 194 (625)
Q Consensus 118 ~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp~-~~~~L~~L~~L~L-~~l~~lP~~-i~~L~~L~~L~L~~~~~l~~lp~ 194 (625)
.++....+|+.+.+. . .++.|++ +|.++.+|+.+.| +++..++.. +.++ +|+.+.+..+ +..++.
T Consensus 40 ~~~~~~~~i~~v~ip--------~-~vt~Ig~~aF~~C~~L~~I~lp~~v~~Ig~~aF~~c-~l~~i~~~~~--l~~I~~ 107 (379)
T 4h09_A 40 PWYKDRDRISEVRVN--------S-GITSIGEANFNSCYNMTKVTVASTVTSIGDGAFADT-KLQSYTGMER--VKKFGD 107 (379)
T ss_dssp TTGGGGGGCSEEEEC--------T-TEEEECTTTTTTCTTCCEEEECTTCCEECTTTTTTC-CCCEEEECTT--CCEECT
T ss_pred cccccccCCEEEEeC--------C-CccChHHHHhhCCCCCCEEEeCCcceEechhhhcCC-CCceEECCce--eeEecc
Confidence 357777889988887 3 3666654 5888999999999 667777654 4444 6777776543 566665
Q ss_pred ccccccccceEEec
Q 037953 195 GIGKLINLRHLIFT 208 (625)
Q Consensus 195 ~l~~L~~L~~L~l~ 208 (625)
......+|+.+.+.
T Consensus 108 ~aF~~~~L~~i~lp 121 (379)
T 4h09_A 108 YVFQGTDLDDFEFP 121 (379)
T ss_dssp TTTTTCCCSEEECC
T ss_pred ceeccCCcccccCC
Confidence 53333478888774
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
Probab=97.33 E-value=0.00013 Score=70.59 Aligned_cols=78 Identities=23% Similarity=0.224 Sum_probs=45.3
Q ss_pred ccccccceecC-CC-CCCC---chhhcCCCCCceEeecCCCCCCcccccccccc--ccceEEecCccccc-cc-------
Q 037953 152 EKLIHLRYLKL-NL-VGDL---PEKCCELLNLQTLELENSSHFKRFPQGIGKLI--NLRHLIFTEDLLEY-MP------- 216 (625)
Q Consensus 152 ~~L~~L~~L~L-~~-l~~l---P~~i~~L~~L~~L~L~~~~~l~~lp~~l~~L~--~L~~L~l~~~~l~~-lp------- 216 (625)
.++++|+.|+| ++ +..+ |..+..+++|++|+|++|. +..+ ..+..++ +|++|++.+|.+.. +|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~-i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNE-LKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSC-CCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCc-cCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 35666777777 33 4443 3455677777777777776 6655 3344444 77777776665542 33
Q ss_pred ccCCCccccccCCce
Q 037953 217 KGIEKLTSLRTLSEF 231 (625)
Q Consensus 217 ~~i~~L~~L~~L~~~ 231 (625)
..+..+++|+.|+..
T Consensus 245 ~il~~~P~L~~LDg~ 259 (267)
T 3rw6_A 245 AIRERFPKLLRLDGH 259 (267)
T ss_dssp HHHHHCTTCCEESSC
T ss_pred HHHHHCcccCeECCc
Confidence 124456666666643
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00019 Score=69.50 Aligned_cols=104 Identities=16% Similarity=0.144 Sum_probs=73.1
Q ss_pred hccCCcceE--EEeecccCCccccCc-hhhHHHhcCCceeEEEeecCCCccccccchhhh---hcccccccccceecC-C
Q 037953 91 IFNAIKLRS--LILFYWIPNLDAMLP-VLKGIFDQLTCLRALRIEGTDNWELEEDQTNEI---LNGVEKLIHLRYLKL-N 163 (625)
Q Consensus 91 ~~~l~~Lr~--L~L~~~~~~~~~~lp-~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~l---p~~~~~L~~L~~L~L-~ 163 (625)
+...+.|+. ++++.|. ...++ .++....++++|++|+|+ +|.+..+ |..+..+++|++|+| +
T Consensus 137 l~~dp~L~~~~l~l~~N~---~~~~~~~l~i~~~~l~~L~~L~Ls--------~N~l~~l~~l~~~~~~l~~L~~L~Ls~ 205 (267)
T 3rw6_A 137 LRSDPDLVAQNIDVVLNR---RSCMAATLRIIEENIPELLSLNLS--------NNRLYRLDDMSSIVQKAPNLKILNLSG 205 (267)
T ss_dssp GGGCHHHHHTTCCCCTTS---HHHHHHHHHHHHHHCTTCCEEECT--------TSCCCCCGGGTTHHHHSTTCCEEECTT
T ss_pred cCCCcchhhcCccccCCH---HHHHHHHHHHHHhhCCCCCEEECC--------CCCCCCCccchhHHhhCCCCCEEECCC
Confidence 445556666 6666653 22222 011334679999999999 8886654 566789999999999 5
Q ss_pred C-CCCCchhhcCCC--CCceEeecCCCCCC-cccc-------ccccccccceEEe
Q 037953 164 L-VGDLPEKCCELL--NLQTLELENSSHFK-RFPQ-------GIGKLINLRHLIF 207 (625)
Q Consensus 164 ~-l~~lP~~i~~L~--~L~~L~L~~~~~l~-~lp~-------~l~~L~~L~~L~l 207 (625)
+ +..+ ..+..+. +|++|+|++|. +. .+|. .+..+++|+.||-
T Consensus 206 N~i~~~-~~l~~l~~l~L~~L~L~~Np-l~~~~~~~~~y~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 206 NELKSE-RELDKIKGLKLEELWLDGNS-LCDTFRDQSTYISAIRERFPKLLRLDG 258 (267)
T ss_dssp SCCCSG-GGGGGGTTSCCSEEECTTST-TGGGCSSHHHHHHHHHHHCTTCCEESS
T ss_pred CccCCc-hhhhhcccCCcceEEccCCc-CccccCcchhHHHHHHHHCcccCeECC
Confidence 5 8777 4556555 99999999999 54 4542 3678999999985
|
| >2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A* | Back alignment and structure |
|---|
Probab=97.22 E-value=0.00011 Score=79.77 Aligned_cols=48 Identities=19% Similarity=0.194 Sum_probs=40.9
Q ss_pred cHHHHHHHHHHHHhhCCCCcccccCCCCCEeeEEeChHHHHHHHHHhhccce
Q 037953 2 EMEMIAEGYFDYLATRSLFQEFQRDEEGIVKRCKMHDIVHDFALFLNKKECA 53 (625)
Q Consensus 2 ~~e~~g~~~~~~L~~~sll~~~~~~~~g~~~~~~mHdlv~d~~~~i~~~e~~ 53 (625)
++||+|+ ||++|++|||+++...+ ...+|+|||+||++|+.++++++.
T Consensus 426 ~~~~~~~-~l~~L~~rsLl~~~~~~---~~~~~~mHdlv~~~a~~~~~~~~~ 473 (549)
T 2a5y_B 426 LDDEVAD-RLKRLSKRGALLSGKRM---PVLTFKIDHIIHMFLKHVVDAQTI 473 (549)
T ss_dssp CTHHHHH-HHHHTTTBSSCSEEECS---SSCEEECCHHHHHHHHTTSCTHHH
T ss_pred CHHHHHH-HHHHHHHcCCeeEecCC---CceEEEeChHHHHHHHHHHHHHHH
Confidence 4788998 99999999999987643 445799999999999999987764
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=93.52 E-value=0.054 Score=64.59 Aligned_cols=45 Identities=20% Similarity=0.190 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHhhCCCCcccccCCCCCEeeEEeChHHHHHHHHHhhcc
Q 037953 4 EMIAEGYFDYLATRSLFQEFQRDEEGIVKRCKMHDIVHDFALFLNKKE 51 (625)
Q Consensus 4 e~~g~~~~~~L~~~sll~~~~~~~~g~~~~~~mHdlv~d~~~~i~~~e 51 (625)
++.+++++++|+++||++... +|...+|+|||+||++|+..+.++
T Consensus 408 ~~~~~~~l~~L~~~sl~~~~~---~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 408 TEEVEDILQEFVNKSLLFCNR---NGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp HHHHHHHHHHHHHTTSCEEEE---SSSSEEEECCHHHHHHHHHHTGGG
T ss_pred HHHHHHHHHHHHhccceEEec---CCCceEEEecHHHHHHHHhhhhHH
Confidence 678899999999999999754 355567899999999999998766
|
| >3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* | Back alignment and structure |
|---|
Probab=92.33 E-value=0.17 Score=42.76 Aligned_cols=34 Identities=21% Similarity=0.353 Sum_probs=20.7
Q ss_pred CCceEeecCCCCCCccccc-cccccccceEEecCcc
Q 037953 177 NLQTLELENSSHFKRFPQG-IGKLINLRHLIFTEDL 211 (625)
Q Consensus 177 ~L~~L~L~~~~~l~~lp~~-l~~L~~L~~L~l~~~~ 211 (625)
+|++|+|++|. ++.+|.+ |..+++|++|+|..|.
T Consensus 32 ~l~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 32 DTTELVLTGNN-LTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TCSEEECTTSC-CSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CCCEEECCCCc-CCccChhhhhhccccCEEEecCCC
Confidence 46666666666 6666554 4556666666665553
|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=91.80 E-value=0.14 Score=46.54 Aligned_cols=112 Identities=9% Similarity=0.033 Sum_probs=56.4
Q ss_pred hhccCCcceEEEeecc-cCCccccCchhhHHHhcCCceeEEEeecCCCccccccchh-----hhhcccccccccceecC-
Q 037953 90 SIFNAIKLRSLILFYW-IPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTN-----EILNGVEKLIHLRYLKL- 162 (625)
Q Consensus 90 ~~~~l~~Lr~L~L~~~-~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~-----~lp~~~~~L~~L~~L~L- 162 (625)
.+.+-+.|++|+|+++ ... ......+.+.+..-+.|+.|+|+ +|.++ .+.+.+..-+.|+.|+|
T Consensus 36 ll~~n~~L~~L~L~~nn~ig-d~ga~~la~aL~~N~~L~~L~L~--------~n~igd~ga~alA~aL~~N~tL~~L~L~ 106 (197)
T 1pgv_A 36 LREDDTDLKEVNINNMKRVS-KERIRSLIEAACNSKHIEKFSLA--------NTAISDSEARGLIELIETSPSLRVLNVE 106 (197)
T ss_dssp HHTTCSSCCEEECTTCCSSC-HHHHHHHHHHHTTCSCCCEEECT--------TSCCBHHHHTTHHHHHHHCSSCCEEECC
T ss_pred HHhcCCCccEEECCCCCCCC-HHHHHHHHHHHhhCCCcCEEEcc--------CCCCChHHHHHHHHHHhcCCccCeEecC
Confidence 3344567777777764 211 11111112555666777777777 55543 23334444556666666
Q ss_pred CC-CCC-----CchhhcCCCCCceEeecCCC--CCCc-----cccccccccccceEEecCc
Q 037953 163 NL-VGD-----LPEKCCELLNLQTLELENSS--HFKR-----FPQGIGKLINLRHLIFTED 210 (625)
Q Consensus 163 ~~-l~~-----lP~~i~~L~~L~~L~L~~~~--~l~~-----lp~~l~~L~~L~~L~l~~~ 210 (625)
++ ++. +-+.+..-+.|+.|+|++|. .++. +-..+..-+.|+.|++..+
T Consensus 107 ~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 107 SNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA 167 (197)
T ss_dssp SSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred CCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence 33 432 22334444557777776543 1231 2222344456666666443
|
| >1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens} | Back alignment and structure |
|---|
Probab=87.95 E-value=0.47 Score=51.41 Aligned_cols=41 Identities=24% Similarity=0.217 Sum_probs=34.1
Q ss_pred HHHHHHHHHHhhCCCCcccccCCCCCEeeEEeChHHHHHHHHHh
Q 037953 5 MIAEGYFDYLATRSLFQEFQRDEEGIVKRCKMHDIVHDFALFLN 48 (625)
Q Consensus 5 ~~g~~~~~~L~~~sll~~~~~~~~g~~~~~~mHdlv~d~~~~i~ 48 (625)
+.++.++++|+++|||+... +|...+|+|||+||++++...
T Consensus 409 ~~~~~~l~~L~~~~Ll~~~~---~~~~~~~~~H~lv~~~~~~~~ 449 (591)
T 1z6t_A 409 EEVEDILQEFVNKSLLFCDR---NGKSFRYYLHDLQVDFLTEKN 449 (591)
T ss_dssp HHHHHHHHHHHHTTSSEEEE---ETTEEEEECCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCcCeEEec---CCCccEEEEcHHHHHHHHhhh
Confidence 46789999999999998643 355667999999999998874
|
| >3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* | Back alignment and structure |
|---|
Probab=87.29 E-value=0.35 Score=40.76 Aligned_cols=51 Identities=20% Similarity=0.159 Sum_probs=31.1
Q ss_pred EEEEEcCCCC--cchhhhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeec
Q 037953 76 HLMLVLGYEA--PSLVSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEG 133 (625)
Q Consensus 76 ~L~l~~~~~~--~~~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~ 133 (625)
+++.+++++. .+|..+. ++|+.|+|++|. +....+ +.|..+++|++|+|++
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~--l~~l~~---~~f~~l~~L~~L~L~~ 64 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNN--LTALPP---GLLDALPALRTAHLGA 64 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSC--CSSCCT---TTGGGCTTCCEEECCS
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCc--CCccCh---hhhhhccccCEEEecC
Confidence 4455555555 6664432 457777777755 333444 6677777777777773
|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=87.16 E-value=0.47 Score=43.09 Aligned_cols=82 Identities=12% Similarity=0.128 Sum_probs=44.6
Q ss_pred HHHhcCCceeEEEeecCCCcccccc-chh-----hhhcccccccccceecC--CCCC-----CCchhhcCCCCCceEeec
Q 037953 118 GIFDQLTCLRALRIEGTDNWELEED-QTN-----EILNGVEKLIHLRYLKL--NLVG-----DLPEKCCELLNLQTLELE 184 (625)
Q Consensus 118 ~~~~~l~~Lr~L~Ls~c~~~~~~~~-~l~-----~lp~~~~~L~~L~~L~L--~~l~-----~lP~~i~~L~~L~~L~L~ 184 (625)
..+.+-+.|+.|+|+ ++ .++ .+-+.+..-+.|+.|+| |.++ .+-+.+..-+.|++|+|+
T Consensus 35 ~ll~~n~~L~~L~L~--------~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~ 106 (197)
T 1pgv_A 35 RLREDDTDLKEVNIN--------NMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVE 106 (197)
T ss_dssp HHHTTCSSCCEEECT--------TCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECC
T ss_pred HHHhcCCCccEEECC--------CCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecC
Confidence 455667889999998 54 443 34445555566666666 2232 233334445566666666
Q ss_pred CCCCCCc-----cccccccccccceEEec
Q 037953 185 NSSHFKR-----FPQGIGKLINLRHLIFT 208 (625)
Q Consensus 185 ~~~~l~~-----lp~~l~~L~~L~~L~l~ 208 (625)
+|. ++. +-+.+..-+.|++|+++
T Consensus 107 ~N~-Ig~~Ga~ala~aL~~N~tL~~L~L~ 134 (197)
T 1pgv_A 107 SNF-LTPELLARLLRSTLVTQSIVEFKAD 134 (197)
T ss_dssp SSB-CCHHHHHHHHHHTTTTCCCSEEECC
T ss_pred CCc-CCHHHHHHHHHHHhhCCceeEEECC
Confidence 666 542 11223333445555553
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* | Back alignment and structure |
|---|
Probab=80.68 E-value=0.79 Score=52.32 Aligned_cols=36 Identities=11% Similarity=-0.006 Sum_probs=29.2
Q ss_pred HHHHHHHHHHhhCCCCcccccCCCCCEeeEEeChHHHHHHH
Q 037953 5 MIAEGYFDYLATRSLFQEFQRDEEGIVKRCKMHDIVHDFAL 45 (625)
Q Consensus 5 ~~g~~~~~~L~~~sll~~~~~~~~g~~~~~~mHdlv~d~~~ 45 (625)
+.|+++|++|+++|||+.. +...+|+|||++++++.
T Consensus 402 edAe~~L~eLvdRSLLq~d-----~~~~rYrMHDLllELr~ 437 (1221)
T 1vt4_I 402 SDVMVVVNKLHKYSLVEKQ-----PKESTISIPSIYLELKV 437 (1221)
T ss_dssp HHHHHHHHHHHTSSSSSBC-----SSSSEEBCCCHHHHHHH
T ss_pred HHHHHHHHHHHhhCCEEEe-----CCCCEEEehHHHHHHhc
Confidence 4689999999999999983 22346899999999653
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 625 | ||||
| d1p1ja1 | 410 | c.2.1.3 (A:9-322,A:438-533) Myo-inositol 1-phospha | 3e-05 | |
| d1vkoa1 | 397 | c.2.1.3 (A:11-314,A:429-521) Myo-inositol 1-phosph | 4e-05 | |
| d2astb2 | 284 | c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 | 0.002 |
| >d1p1ja1 c.2.1.3 (A:9-322,A:438-533) Myo-inositol 1-phosphate synthase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 410 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Myo-inositol 1-phosphate synthase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 44.4 bits (105), Expect = 3e-05
Identities = 13/49 (26%), Positives = 23/49 (46%), Gaps = 4/49 (8%)
Query: 580 FVTFESILPKVNSDDIAFGGRHTSDMNLAEA----KVLDIDFIAEIYDH 624
+ F S+LP V+ +D G ++ +L EA +VL+ D +
Sbjct: 119 YAPFNSLLPMVSPNDFVVSGWDINNADLYEAMQRSQVLEYDLQQRLKAK 167
|
| >d1vkoa1 c.2.1.3 (A:11-314,A:429-521) Myo-inositol 1-phosphate synthase {Caenorhabditis elegans [TaxId: 6239]} Length = 397 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Myo-inositol 1-phosphate synthase species: Caenorhabditis elegans [TaxId: 6239]
Score = 44.0 bits (104), Expect = 4e-05
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Query: 580 FVTFESILPKVNSDDIAFGGRHTSDMNLAEA----KVLDIDFIAEIYDH 624
FV F+ I+P ++ +D+ G SD NL EA KV + + ++
Sbjct: 117 FVPFKDIVPILSPNDLIISGWDISDSNLYEAMGRAKVFEPELQEKLRPF 165
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.8 bits (86), Expect = 0.002
Identities = 28/232 (12%), Positives = 70/232 (30%), Gaps = 8/232 (3%)
Query: 153 KLIHLRYLKLNLVGDLPEKCCELLNLQTLELENSS-HFKRFPQGIGKLINLRHLIFTE-D 210
+I R + + + +Q ++L NS + + L++L
Sbjct: 24 GVIAFR-CPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLR 82
Query: 211 LLEYMPKGIEKLTSLRTLS---EFVVASGGGRYGSEACKLEGLRHLNHLRGSLKVRGLGN 267
L + + + K ++L L+ + + +C +L+ +
Sbjct: 83 LSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVA 142
Query: 268 VADVDEVKNAHLEKKKNLVRLILRFKDIDKAVKRWPEAISNENAAKHEAICEALWPPPNL 327
VA V E + + +++ + + L
Sbjct: 143 VAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYL 202
Query: 328 ESLEIAGFRGRKMMLSTNWMASLNMLKKLRLLNCPTCEIMPPLGQ-LPSLEI 378
+ L ++ + + + + LK L++ + L + LP L+I
Sbjct: 203 QHLSLSRCY-DIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQI 253
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 625 | |||
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 99.82 | |
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 99.8 | |
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 99.79 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 99.75 | |
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 99.74 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 99.72 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 99.67 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 99.57 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 99.57 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 99.52 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 99.51 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 99.5 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 99.5 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 99.46 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.44 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.41 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 99.4 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.34 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.33 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 99.33 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 99.32 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 99.23 | |
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.23 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 99.22 | |
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.21 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 99.2 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 99.17 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 99.12 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 99.03 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 98.97 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 98.86 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 98.83 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 98.68 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 98.63 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 98.56 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 98.52 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 97.47 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 97.41 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 96.73 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 96.09 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 95.92 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 95.65 |
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=99.82 E-value=2.4e-19 Score=184.69 Aligned_cols=160 Identities=16% Similarity=0.183 Sum_probs=80.3
Q ss_pred CCCCcEEEEeccCCCcccCCchhhcccccccEEEEeCCCCCCCCCCCCCCCCcceeeccccccceeeCccCCCCCCCCCC
Q 037953 324 PPNLESLEIAGFRGRKMMLSTNWMASLNMLKKLRLLNCPTCEIMPPLGQLPSLEILLIKDMTSVERVGDESLGIANGDHG 403 (625)
Q Consensus 324 ~~~L~~L~L~~~~~~~~~~~p~~l~~l~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~ 403 (625)
+++|+.|++++|.... +..+..+++|+.|++++|. +..++.++.+++|+.|+++++. +..++. +........+
T Consensus 218 ~~~L~~L~l~~n~l~~----~~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~~L~~L~l~~~~-l~~~~~-~~~~~~l~~l 290 (384)
T d2omza2 218 LTNLDELSLNGNQLKD----IGTLASLTNLTDLDLANNQ-ISNLAPLSGLTKLTELKLGANQ-ISNISP-LAGLTALTNL 290 (384)
T ss_dssp CTTCCEEECCSSCCCC----CGGGGGCTTCSEEECCSSC-CCCCGGGTTCTTCSEEECCSSC-CCCCGG-GTTCTTCSEE
T ss_pred cCCCCEEECCCCCCCC----cchhhcccccchhccccCc-cCCCCcccccccCCEeeccCcc-cCCCCc-cccccccccc
Confidence 4455566665555444 2344555566666665542 4444445555566666655543 222221 1111111000
Q ss_pred CCCC----CCCCCCCCCCCCeeeccCcccccccccCCCCcccCCCccEEEEecCCCCCcCCcCCCCCCCCCEEEEecCcc
Q 037953 404 APSS----SSVNNIAFPKLKELEFSGLQEWEDWDFRKEDITIMPQINSLSIYGCHKLKSLPDQLLQSSTLKTLRINRCRV 479 (625)
Q Consensus 404 ~~~~----~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~ 479 (625)
..+. .......+++++.|+++++ +++.+.. +..+++|++|++++| .++.+| .+..+++|++|++++|+
T Consensus 291 ~~~~n~l~~~~~~~~~~~l~~L~ls~n-~l~~l~~----l~~l~~L~~L~L~~n-~l~~l~-~l~~l~~L~~L~l~~N~- 362 (384)
T d2omza2 291 ELNENQLEDISPISNLKNLTYLTLYFN-NISDISP----VSSLTKLQRLFFANN-KVSDVS-SLANLTNINWLSAGHNQ- 362 (384)
T ss_dssp ECCSSCCSCCGGGGGCTTCSEEECCSS-CCSCCGG----GGGCTTCCEEECCSS-CCCCCG-GGGGCTTCCEEECCSSC-
T ss_pred cccccccccccccchhcccCeEECCCC-CCCCCcc----cccCCCCCEEECCCC-CCCCCh-hHcCCCCCCEEECCCCc-
Confidence 0000 0111455677777777765 3444321 236777788887775 566665 35667777888777764
Q ss_pred hhhcccccccccCCCCceEEe
Q 037953 480 LEEHFKKDRSKISHIPDIQIY 500 (625)
Q Consensus 480 L~~~~~~~~~~l~~l~~l~~~ 500 (625)
+++++ .+..+++++.+.+.
T Consensus 363 l~~l~--~l~~l~~L~~L~L~ 381 (384)
T d2omza2 363 ISDLT--PLANLTRITQLGLN 381 (384)
T ss_dssp CCBCG--GGTTCTTCSEEECC
T ss_pred CCCCh--hhccCCCCCEeeCC
Confidence 44433 23344444444443
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=99.80 E-value=9e-21 Score=190.05 Aligned_cols=247 Identities=18% Similarity=0.175 Sum_probs=183.3
Q ss_pred CceEEEEEEcCCCC---cchhhhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhh-
Q 037953 72 EKLRHLMLVLGYEA---PSLVSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEI- 147 (625)
Q Consensus 72 ~~lr~L~l~~~~~~---~~~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~l- 147 (625)
.+++.|++.++.+. .+|+++.++++|++|+|+++ +.+.+.+| ..|+++++|++|+|+ +|.+..+
T Consensus 50 ~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~-N~l~g~iP---~~i~~L~~L~~L~Ls--------~N~l~~~~ 117 (313)
T d1ogqa_ 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGI-NNLVGPIP---PAIAKLTQLHYLYIT--------HTNVSGAI 117 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEE-TTEESCCC---GGGGGCTTCSEEEEE--------EECCEEEC
T ss_pred EEEEEEECCCCCCCCCCCCChHHhcCccccccccccc-cccccccc---cccccccccchhhhc--------cccccccc
Confidence 46899999998774 57889999999999999874 23566778 889999999999999 8886654
Q ss_pred hcccccccccceecC--CC-CCCCchhhcCCCCCceEeecCCCCCCcccccccccccc-ceEEecCcccccc-cccCCCc
Q 037953 148 LNGVEKLIHLRYLKL--NL-VGDLPEKCCELLNLQTLELENSSHFKRFPQGIGKLINL-RHLIFTEDLLEYM-PKGIEKL 222 (625)
Q Consensus 148 p~~~~~L~~L~~L~L--~~-l~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~l~~L~~L-~~L~l~~~~l~~l-p~~i~~L 222 (625)
|..+..+.+|+++++ |. ...+|..++++++|+++++++|...+.+|..++.+.++ +.+++++|.+... |..++.+
T Consensus 118 ~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l 197 (313)
T d1ogqa_ 118 PDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL 197 (313)
T ss_dssp CGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGC
T ss_pred cccccchhhhcccccccccccccCchhhccCcccceeecccccccccccccccccccccccccccccccccccccccccc
Confidence 555888999999999 44 77888899999999999999998445788888888776 6777777766543 3333222
Q ss_pred cccccCCceEecCCCCcCCCcccChhccccccccccceEEeccCCCCChhHHHHhccCCCCCCCeEEEEEecccccccCC
Q 037953 223 TSLRTLSEFVVASGGGRYGSEACKLEGLRHLNHLRGSLKVRGLGNVADVDEVKNAHLEKKKNLVRLILRFKDIDKAVKRW 302 (625)
Q Consensus 223 ~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 302 (625)
..+ .++. .. .......+..+..+++++.++++.+.+.
T Consensus 198 ~~~-~l~l--------------------------------~~----~~~~~~~~~~~~~~~~l~~l~~~~~~l~------ 234 (313)
T d1ogqa_ 198 NLA-FVDL--------------------------------SR----NMLEGDASVLFGSDKNTQKIHLAKNSLA------ 234 (313)
T ss_dssp CCS-EEEC--------------------------------CS----SEEEECCGGGCCTTSCCSEEECCSSEEC------
T ss_pred ccc-cccc--------------------------------cc----cccccccccccccccccccccccccccc------
Confidence 211 1111 00 0001112334556678888887766421
Q ss_pred cccccccchhhHHHHhhcCCCCCCCcEEEEeccCCC-cccCCchhhcccccccEEEEeCCCCCCCCCCCCCCCCcceeec
Q 037953 303 PEAISNENAAKHEAICEALWPPPNLESLEIAGFRGR-KMMLSTNWMASLNMLKKLRLLNCPTCEIMPPLGQLPSLEILLI 381 (625)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~-~~~~~p~~l~~l~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L 381 (625)
..+..+..+++|+.|++++|... .+ |.+++++++|++|+|++|...+.+|.++.+++|+.+++
T Consensus 235 -------------~~~~~~~~~~~L~~L~Ls~N~l~g~i---P~~l~~L~~L~~L~Ls~N~l~g~iP~~~~L~~L~~l~l 298 (313)
T d1ogqa_ 235 -------------FDLGKVGLSKNLNGLDLRNNRIYGTL---PQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAY 298 (313)
T ss_dssp -------------CBGGGCCCCTTCCEEECCSSCCEECC---CGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGT
T ss_pred -------------ccccccccccccccccCccCeecccC---ChHHhCCCCCCEEECcCCcccccCCCcccCCCCCHHHh
Confidence 12345777899999999999887 45 99999999999999999776668998899999999999
Q ss_pred ccccccee
Q 037953 382 KDMTSVER 389 (625)
Q Consensus 382 ~~~~~l~~ 389 (625)
++|+.+..
T Consensus 299 ~~N~~l~g 306 (313)
T d1ogqa_ 299 ANNKCLCG 306 (313)
T ss_dssp CSSSEEES
T ss_pred CCCccccC
Confidence 99885543
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=99.79 E-value=6e-19 Score=181.67 Aligned_cols=125 Identities=21% Similarity=0.232 Sum_probs=84.0
Q ss_pred CCCCCCCcEEEEeccCCCcccCCchhhcccccccEEEEeCCCCCCCCCCCCCCCCcceeeccccccceeeCccCCCCCCC
Q 037953 321 LWPPPNLESLEIAGFRGRKMMLSTNWMASLNMLKKLRLLNCPTCEIMPPLGQLPSLEILLIKDMTSVERVGDESLGIANG 400 (625)
Q Consensus 321 l~~~~~L~~L~L~~~~~~~~~~~p~~l~~l~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~ 400 (625)
+..+++|+.|+++++..... + .+..++.++.+.+.+| .+..++.+..+++++.|++++|. ++.++.
T Consensus 259 ~~~~~~L~~L~l~~~~l~~~---~-~~~~~~~l~~l~~~~n-~l~~~~~~~~~~~l~~L~ls~n~-l~~l~~-------- 324 (384)
T d2omza2 259 LSGLTKLTELKLGANQISNI---S-PLAGLTALTNLELNEN-QLEDISPISNLKNLTYLTLYFNN-ISDISP-------- 324 (384)
T ss_dssp GTTCTTCSEEECCSSCCCCC---G-GGTTCTTCSEEECCSS-CCSCCGGGGGCTTCSEEECCSSC-CSCCGG--------
T ss_pred ccccccCCEeeccCcccCCC---C-cccccccccccccccc-ccccccccchhcccCeEECCCCC-CCCCcc--------
Confidence 44455666666665555443 2 3445556666666553 23344445566677777776654 443321
Q ss_pred CCCCCCCCCCCCCCCCCCCeeeccCcccccccccCCCCcccCCCccEEEEecCCCCCcCCcCCCCCCCCCEEEEecC
Q 037953 401 DHGAPSSSSVNNIAFPKLKELEFSGLQEWEDWDFRKEDITIMPQINSLSIYGCHKLKSLPDQLLQSSTLKTLRINRC 477 (625)
Q Consensus 401 ~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c 477 (625)
+..+++|++|++++| .++.++. +..+++|++|++++| .++.+++ +.++++|+.|+|+++
T Consensus 325 -----------l~~l~~L~~L~L~~n-~l~~l~~----l~~l~~L~~L~l~~N-~l~~l~~-l~~l~~L~~L~L~~N 383 (384)
T d2omza2 325 -----------VSSLTKLQRLFFANN-KVSDVSS----LANLTNINWLSAGHN-QISDLTP-LANLTRITQLGLNDQ 383 (384)
T ss_dssp -----------GGGCTTCCEEECCSS-CCCCCGG----GGGCTTCCEEECCSS-CCCBCGG-GTTCTTCSEEECCCE
T ss_pred -----------cccCCCCCEEECCCC-CCCCChh----HcCCCCCCEEECCCC-cCCCChh-hccCCCCCEeeCCCC
Confidence 578899999999988 5555542 347999999999985 7888875 778999999999886
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.75 E-value=6.8e-18 Score=168.13 Aligned_cols=224 Identities=17% Similarity=0.218 Sum_probs=122.0
Q ss_pred CceeEEEeecCCCccccccchhhhhc-ccccccccceecC--CCCCCC-chhhcCCCCCceEeecCCCCCCccccccccc
Q 037953 124 TCLRALRIEGTDNWELEEDQTNEILN-GVEKLIHLRYLKL--NLVGDL-PEKCCELLNLQTLELENSSHFKRFPQGIGKL 199 (625)
Q Consensus 124 ~~Lr~L~Ls~c~~~~~~~~~l~~lp~-~~~~L~~L~~L~L--~~l~~l-P~~i~~L~~L~~L~L~~~~~l~~lp~~l~~L 199 (625)
+++++|+|+ +|.++.+|+ +|.++++|++|++ |.+..+ |..+.++++|++|++++|+ ++.+|..+ .
T Consensus 31 ~~l~~L~Ls--------~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~-l~~l~~~~--~ 99 (305)
T d1xkua_ 31 PDTALLDLQ--------NNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ-LKELPEKM--P 99 (305)
T ss_dssp TTCCEEECC--------SSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC-CSBCCSSC--C
T ss_pred CCCCEEECc--------CCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCc-cCcCccch--h
Confidence 567777777 666666664 4667777777777 335554 4456777777777777776 77776543 2
Q ss_pred cccceEEecCccccccccc-CCCccccccCCceEecCCCCcCCCcccChhccccccccccceEEeccCCCCChhHHHHhc
Q 037953 200 INLRHLIFTEDLLEYMPKG-IEKLTSLRTLSEFVVASGGGRYGSEACKLEGLRHLNHLRGSLKVRGLGNVADVDEVKNAH 278 (625)
Q Consensus 200 ~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~ 278 (625)
..++.|++..+.+..++.. +.....+..+....+.... .......+..+++|+ .+.+.++.- ... .
T Consensus 100 ~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~-----~~~~~~~~~~l~~L~-~l~l~~n~l-~~l------~ 166 (305)
T d1xkua_ 100 KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKS-----SGIENGAFQGMKKLS-YIRIADTNI-TTI------P 166 (305)
T ss_dssp TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCG-----GGBCTTGGGGCTTCC-EEECCSSCC-CSC------C
T ss_pred hhhhhhhccccchhhhhhhhhhccccccccccccccccc-----cCCCccccccccccC-ccccccCCc-ccc------C
Confidence 4566777766666555432 2222233332222111111 111222334444444 444433211 110 0
Q ss_pred cCCCCCCCeEEEEEecccccccCCcccccccchhhHHHHhhcCCCCCCCcEEEEeccCCCcccCCchhhcccccccEEEE
Q 037953 279 LEKKKNLVRLILRFKDIDKAVKRWPEAISNENAAKHEAICEALWPPPNLESLEIAGFRGRKMMLSTNWMASLNMLKKLRL 358 (625)
Q Consensus 279 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~p~~l~~l~~L~~L~L 358 (625)
...+++|+.|++++|... ...+..+..++.++.|++++|....+. +.++..+++|++|+|
T Consensus 167 ~~~~~~L~~L~l~~n~~~------------------~~~~~~~~~~~~l~~L~~s~n~l~~~~--~~~~~~l~~L~~L~L 226 (305)
T d1xkua_ 167 QGLPPSLTELHLDGNKIT------------------KVDAASLKGLNNLAKLGLSFNSISAVD--NGSLANTPHLRELHL 226 (305)
T ss_dssp SSCCTTCSEEECTTSCCC------------------EECTGGGTTCTTCCEEECCSSCCCEEC--TTTGGGSTTCCEEEC
T ss_pred cccCCccCEEECCCCcCC------------------CCChhHhhccccccccccccccccccc--cccccccccceeeec
Confidence 112456666666655311 122334556667777777776665542 556667777777777
Q ss_pred eCCCCCCCCC-CCCCCCCcceeeccccccceeeCcc
Q 037953 359 LNCPTCEIMP-PLGQLPSLEILLIKDMTSVERVGDE 393 (625)
Q Consensus 359 ~~c~~l~~l~-~l~~l~~L~~L~L~~~~~l~~l~~~ 393 (625)
++| .++.+| .+..+++|++|+|++|. +++++..
T Consensus 227 ~~N-~L~~lp~~l~~l~~L~~L~Ls~N~-i~~i~~~ 260 (305)
T d1xkua_ 227 NNN-KLVKVPGGLADHKYIQVVYLHNNN-ISAIGSN 260 (305)
T ss_dssp CSS-CCSSCCTTTTTCSSCCEEECCSSC-CCCCCTT
T ss_pred ccc-cccccccccccccCCCEEECCCCc-cCccChh
Confidence 775 455565 36667777777777754 6666543
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=99.74 E-value=4.1e-19 Score=177.78 Aligned_cols=229 Identities=14% Similarity=0.067 Sum_probs=170.8
Q ss_pred ccccCCCCceEEEEEEc-CCC-CcchhhhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCcccccc
Q 037953 65 LLINTCPEKLRHLMLVL-GYE-APSLVSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEED 142 (625)
Q Consensus 65 ~~~~~~~~~lr~L~l~~-~~~-~~~~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~ 142 (625)
|......+++++|++++ |.+ +.+|+++.++++|++|++++|. +.+..| ..+..+.+|++++++ +|
T Consensus 69 p~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~--l~~~~~---~~~~~~~~L~~l~l~--------~N 135 (313)
T d1ogqa_ 69 PSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTN--VSGAIP---DFLSQIKTLVTLDFS--------YN 135 (313)
T ss_dssp CGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEEC--CEEECC---GGGGGCTTCCEEECC--------SS
T ss_pred ChHHhcCccccccccccccccccccccccccccccchhhhcccc--cccccc---ccccchhhhcccccc--------cc
Confidence 44555678999999986 666 5899999999999999999975 566667 779999999999999 88
Q ss_pred c-hhhhhcccccccccceecC--CC-CCCCchhhcCCCCC-ceEeecCCCCCCccccccccccccceEEe-cCccccccc
Q 037953 143 Q-TNEILNGVEKLIHLRYLKL--NL-VGDLPEKCCELLNL-QTLELENSSHFKRFPQGIGKLINLRHLIF-TEDLLEYMP 216 (625)
Q Consensus 143 ~-l~~lp~~~~~L~~L~~L~L--~~-l~~lP~~i~~L~~L-~~L~L~~~~~l~~lp~~l~~L~~L~~L~l-~~~~l~~lp 216 (625)
. ...+|..++++++|+++++ |. ...+|..++.+.++ +.+++++|...+..|..+.++..+ .+++ .+.....+|
T Consensus 136 ~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~-~l~l~~~~~~~~~~ 214 (313)
T d1ogqa_ 136 ALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLA-FVDLSRNMLEGDAS 214 (313)
T ss_dssp EEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCS-EEECCSSEEEECCG
T ss_pred cccccCchhhccCcccceeeccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccc
Confidence 7 5577889999999999999 44 55899999999887 889999998334566667777554 6888 444455667
Q ss_pred ccCCCccccccCCceEecCCCCcCCCcccChhccccccccccceEEeccCCCCChhHHHHhccCCCCCCCeEEEEEeccc
Q 037953 217 KGIEKLTSLRTLSEFVVASGGGRYGSEACKLEGLRHLNHLRGSLKVRGLGNVADVDEVKNAHLEKKKNLVRLILRFKDID 296 (625)
Q Consensus 217 ~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 296 (625)
..++.+++++.+....+.... .+ ..+..+++|+.|++++|.++
T Consensus 215 ~~~~~~~~l~~l~~~~~~l~~--------~~-----------------------------~~~~~~~~L~~L~Ls~N~l~ 257 (313)
T d1ogqa_ 215 VLFGSDKNTQKIHLAKNSLAF--------DL-----------------------------GKVGLSKNLNGLDLRNNRIY 257 (313)
T ss_dssp GGCCTTSCCSEEECCSSEECC--------BG-----------------------------GGCCCCTTCCEEECCSSCCE
T ss_pred ccccccccccccccccccccc--------cc-----------------------------cccccccccccccCccCeec
Confidence 777777777766543322211 11 12445567777888777532
Q ss_pred ccccCCcccccccchhhHHHHhhcCCCCCCCcEEEEeccCCCc-ccCCchhhcccccccEEEEeCCCCCCC
Q 037953 297 KAVKRWPEAISNENAAKHEAICEALWPPPNLESLEIAGFRGRK-MMLSTNWMASLNMLKKLRLLNCPTCEI 366 (625)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~-~~~~p~~l~~l~~L~~L~L~~c~~l~~ 366 (625)
+.+|+.+..+++|+.|+|++|.... + |. ++++++|+.+++++|+.+..
T Consensus 258 ------------------g~iP~~l~~L~~L~~L~Ls~N~l~g~i---P~-~~~L~~L~~l~l~~N~~l~g 306 (313)
T d1ogqa_ 258 ------------------GTLPQGLTQLKFLHSLNVSFNNLCGEI---PQ-GGNLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp ------------------ECCCGGGGGCTTCCEEECCSSEEEEEC---CC-STTGGGSCGGGTCSSSEEES
T ss_pred ------------------ccCChHHhCCCCCCEEECcCCcccccC---CC-cccCCCCCHHHhCCCccccC
Confidence 3466777788889999998887663 4 64 46788999999988775543
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.72 E-value=7.9e-17 Score=160.28 Aligned_cols=254 Identities=15% Similarity=0.153 Sum_probs=159.6
Q ss_pred ccchhhhhcccccccccceecC-CC-CCCCch-hhcCCCCCceEeecCCCCCCcc-ccccccccccceEEecCccccccc
Q 037953 141 EDQTNEILNGVEKLIHLRYLKL-NL-VGDLPE-KCCELLNLQTLELENSSHFKRF-PQGIGKLINLRHLIFTEDLLEYMP 216 (625)
Q Consensus 141 ~~~l~~lp~~~~~L~~L~~L~L-~~-l~~lP~-~i~~L~~L~~L~L~~~~~l~~l-p~~l~~L~~L~~L~l~~~~l~~lp 216 (625)
+..++++|..+. +++++|+| .+ ++.+|+ .+.++++|++|++++|. +..+ |..|.++++|++|++++|.++.+|
T Consensus 19 ~~~L~~lP~~l~--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~-~~~i~~~~f~~l~~L~~L~l~~n~l~~l~ 95 (305)
T d1xkua_ 19 DLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNK-ISKISPGAFAPLVKLERLYLSKNQLKELP 95 (305)
T ss_dssp TSCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC-CCCBCTTTTTTCTTCCEEECCSSCCSBCC
T ss_pred CCCCCccCCCCC--CCCCEEECcCCcCCCcChhHhhcccccccccccccc-ccccchhhhhCCCccCEecccCCccCcCc
Confidence 667888998774 68999999 44 999986 58999999999999999 6666 556999999999999988999998
Q ss_pred ccCCCccccccCCceEecCCCCcCCCcccChhccccccccccceEEeccCCCCChhHHHHhccCCCCCCCeEEEEEeccc
Q 037953 217 KGIEKLTSLRTLSEFVVASGGGRYGSEACKLEGLRHLNHLRGSLKVRGLGNVADVDEVKNAHLEKKKNLVRLILRFKDID 296 (625)
Q Consensus 217 ~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 296 (625)
... ...++.|....+.... ..... +.....+..+....+...
T Consensus 96 ~~~--~~~l~~L~~~~n~l~~-------l~~~~-----------------------------~~~~~~~~~l~~~~n~~~ 137 (305)
T d1xkua_ 96 EKM--PKTLQELRVHENEITK-------VRKSV-----------------------------FNGLNQMIVVELGTNPLK 137 (305)
T ss_dssp SSC--CTTCCEEECCSSCCCB-------BCHHH-----------------------------HTTCTTCCEEECCSSCCC
T ss_pred cch--hhhhhhhhccccchhh-------hhhhh-----------------------------hhcccccccccccccccc
Confidence 654 2344444433222111 00000 111222222322222100
Q ss_pred ccccCCcccccccchhhHHHHhhcCCCCCCCcEEEEeccCCCcccCCchhhcccccccEEEEeCCCCCCCCC-CCCCCCC
Q 037953 297 KAVKRWPEAISNENAAKHEAICEALWPPPNLESLEIAGFRGRKMMLSTNWMASLNMLKKLRLLNCPTCEIMP-PLGQLPS 375 (625)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~p~~l~~l~~L~~L~L~~c~~l~~l~-~l~~l~~ 375 (625)
........+..+++|+.+++.++....+ |.. .+++|+.|++++|......+ .+..++.
T Consensus 138 ----------------~~~~~~~~~~~l~~L~~l~l~~n~l~~l---~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~ 196 (305)
T d1xkua_ 138 ----------------SSGIENGAFQGMKKLSYIRIADTNITTI---PQG--LPPSLTELHLDGNKITKVDAASLKGLNN 196 (305)
T ss_dssp ----------------GGGBCTTGGGGCTTCCEEECCSSCCCSC---CSS--CCTTCSEEECTTSCCCEECTGGGTTCTT
T ss_pred ----------------ccCCCccccccccccCccccccCCcccc---Ccc--cCCccCEEECCCCcCCCCChhHhhcccc
Confidence 0111122344456677777776665554 443 25677777777765444443 3667777
Q ss_pred cceeeccccccceeeCccCCCCCCCCCCCCCCCCCCCCCCCCCCeeeccCcccccccccCCCCcccCCCccEEEEecCCC
Q 037953 376 LEILLIKDMTSVERVGDESLGIANGDHGAPSSSSVNNIAFPKLKELEFSGLQEWEDWDFRKEDITIMPQINSLSIYGCHK 455 (625)
Q Consensus 376 L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~ 455 (625)
++.|++++|. +..++..+ +..+++|++|+++++ +++.++. ++..+++|++|++++| +
T Consensus 197 l~~L~~s~n~-l~~~~~~~-----------------~~~l~~L~~L~L~~N-~L~~lp~---~l~~l~~L~~L~Ls~N-~ 253 (305)
T d1xkua_ 197 LAKLGLSFNS-ISAVDNGS-----------------LANTPHLRELHLNNN-KLVKVPG---GLADHKYIQVVYLHNN-N 253 (305)
T ss_dssp CCEEECCSSC-CCEECTTT-----------------GGGSTTCCEEECCSS-CCSSCCT---TTTTCSSCCEEECCSS-C
T ss_pred cccccccccc-cccccccc-----------------ccccccceeeecccc-ccccccc---ccccccCCCEEECCCC-c
Confidence 7788777764 55554433 456677888888776 4555432 2446788888888884 6
Q ss_pred CCcCCcCC-------CCCCCCCEEEEecCcc
Q 037953 456 LKSLPDQL-------LQSSTLKTLRINRCRV 479 (625)
Q Consensus 456 l~~lp~~~-------~~l~~L~~L~l~~c~~ 479 (625)
++.++... ..+++|+.|++++||.
T Consensus 254 i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~ 284 (305)
T d1xkua_ 254 ISAIGSNDFCPPGYNTKKASYSGVSLFSNPV 284 (305)
T ss_dssp CCCCCTTSSSCSSCCTTSCCCSEEECCSSSS
T ss_pred cCccChhhccCcchhcccCCCCEEECCCCcC
Confidence 77775432 2357788888888873
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=99.67 E-value=2.1e-15 Score=152.58 Aligned_cols=299 Identities=16% Similarity=0.113 Sum_probs=154.1
Q ss_pred CcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhhhcccccccccceecC-CC-CCCCchhh
Q 037953 95 IKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEILNGVEKLIHLRYLKL-NL-VGDLPEKC 172 (625)
Q Consensus 95 ~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp~~~~~L~~L~~L~L-~~-l~~lP~~i 172 (625)
.++++|+|+++. ...+| + ..++|++|+|+ +|.++++|+.++ +|+.|++ .+ +..++. +
T Consensus 38 ~~l~~LdLs~~~---L~~lp---~---~~~~L~~L~Ls--------~N~l~~lp~~~~---~L~~L~l~~n~l~~l~~-l 96 (353)
T d1jl5a_ 38 RQAHELELNNLG---LSSLP---E---LPPHLESLVAS--------CNSLTELPELPQ---SLKSLLVDNNNLKALSD-L 96 (353)
T ss_dssp HTCSEEECTTSC---CSCCC---S---CCTTCSEEECC--------SSCCSSCCCCCT---TCCEEECCSSCCSCCCS-C
T ss_pred cCCCEEEeCCCC---CCCCC---C---CCCCCCEEECC--------CCCCcccccchh---hhhhhhhhhcccchhhh-h
Confidence 357777777764 33455 3 24577777777 777777776543 5566666 22 444432 1
Q ss_pred cCCCCCceEeecCCCCCCccccccccccccceEEecCcccccccccCCCccccccCCceEecCCCCcCCCcccChhcccc
Q 037953 173 CELLNLQTLELENSSHFKRFPQGIGKLINLRHLIFTEDLLEYMPKGIEKLTSLRTLSEFVVASGGGRYGSEACKLEGLRH 252 (625)
Q Consensus 173 ~~L~~L~~L~L~~~~~l~~lp~~l~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~ 252 (625)
.+.|++|++++|. +..+|. ++++++|++|++.++.+...|.....+..+.... ... .....+..
T Consensus 97 --p~~L~~L~L~~n~-l~~lp~-~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~~~---~~~---------~~~~~l~~ 160 (353)
T d1jl5a_ 97 --PPLLEYLGVSNNQ-LEKLPE-LQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGN---NQL---------EELPELQN 160 (353)
T ss_dssp --CTTCCEEECCSSC-CSSCCC-CTTCTTCCEEECCSSCCSCCCCCCTTCCEEECCS---SCC---------SSCCCCTT
T ss_pred --ccccccccccccc-cccccc-hhhhccceeeccccccccccccccccccchhhcc---ccc---------cccccccc
Confidence 1357788888877 777774 5677888888887666666655444443332211 111 11122223
Q ss_pred ccccccceEEeccCCCCChhHHHHhccCCCCCCCeEEEEEecccccccCCcccccccchhhHHHHhhcCCCCCCCcEEEE
Q 037953 253 LNHLRGSLKVRGLGNVADVDEVKNAHLEKKKNLVRLILRFKDIDKAVKRWPEAISNENAAKHEAICEALWPPPNLESLEI 332 (625)
Q Consensus 253 L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L 332 (625)
++.++ .+.+........ .......+.+....+. .........++.|+.+.+
T Consensus 161 l~~l~-~L~l~~n~~~~~--------~~~~~~~~~l~~~~~~--------------------~~~~~~~~~l~~L~~l~l 211 (353)
T d1jl5a_ 161 LPFLT-AIYADNNSLKKL--------PDLPLSLESIVAGNNI--------------------LEELPELQNLPFLTTIYA 211 (353)
T ss_dssp CTTCC-EEECCSSCCSSC--------CCCCTTCCEEECCSSC--------------------CSSCCCCTTCTTCCEEEC
T ss_pred cccce-eccccccccccc--------cccccccccccccccc--------------------cccccccccccccccccc
Confidence 33333 343333211000 0011112222222111 011223445677788887
Q ss_pred eccCCCcccCCchhhcccccccEEEEeCCCCCCCCCCCCCCCCcceeeccccc--cceeeCccCCCCCCCCCCCCCCCCC
Q 037953 333 AGFRGRKMMLSTNWMASLNMLKKLRLLNCPTCEIMPPLGQLPSLEILLIKDMT--SVERVGDESLGIANGDHGAPSSSSV 410 (625)
Q Consensus 333 ~~~~~~~~~~~p~~l~~l~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~~~--~l~~l~~~~~~~~~~~~~~~~~~~~ 410 (625)
+++..... |... .++..+.+.++.... .+. ..+++....+..+. .+..++....... .....+ ..
T Consensus 212 ~~n~~~~~---~~~~---~~l~~~~~~~~~~~~-~~~--~~~~l~~~~~~~~~~~~l~~l~~~~~~~~-~~~~~~---~~ 278 (353)
T d1jl5a_ 212 DNNLLKTL---PDLP---PSLEALNVRDNYLTD-LPE--LPQSLTFLDVSENIFSGLSELPPNLYYLN-ASSNEI---RS 278 (353)
T ss_dssp CSSCCSSC---CSCC---TTCCEEECCSSCCSC-CCC--CCTTCCEEECCSSCCSEESCCCTTCCEEE-CCSSCC---SE
T ss_pred cccccccc---cccc---ccccccccccccccc-ccc--ccccccccccccccccccccccchhcccc-cccCcc---cc
Confidence 77765554 4332 456666666543222 211 12233333333221 1111211110000 000000 00
Q ss_pred CCCCCCCCCeeeccCcccccccccCCCCcccCCCccEEEEecCCCCCcCCcCCCCCCCCCEEEEecCcchhhcc
Q 037953 411 NNIAFPKLKELEFSGLQEWEDWDFRKEDITIMPQINSLSIYGCHKLKSLPDQLLQSSTLKTLRINRCRVLEEHF 484 (625)
Q Consensus 411 ~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~L~~~~ 484 (625)
....+++|++|++++| ++..++ . .+++|+.|++++| .++++|.. +++|++|++++|+ ++++|
T Consensus 279 ~~~~~~~L~~L~Ls~N-~l~~lp---~---~~~~L~~L~L~~N-~L~~l~~~---~~~L~~L~L~~N~-L~~lp 340 (353)
T d1jl5a_ 279 LCDLPPSLEELNVSNN-KLIELP---A---LPPRLERLIASFN-HLAEVPEL---PQNLKQLHVEYNP-LREFP 340 (353)
T ss_dssp ECCCCTTCCEEECCSS-CCSCCC---C---CCTTCCEEECCSS-CCSCCCCC---CTTCCEEECCSSC-CSSCC
T ss_pred ccccCCCCCEEECCCC-ccCccc---c---ccCCCCEEECCCC-cCCccccc---cCCCCEEECcCCc-CCCCC
Confidence 1244688999999987 455554 1 4789999999885 68889864 5689999999997 66665
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=99.57 E-value=4.7e-14 Score=142.41 Aligned_cols=295 Identities=19% Similarity=0.153 Sum_probs=172.0
Q ss_pred ceEEEEEEcCCCCcchhhhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhhhcccc
Q 037953 73 KLRHLMLVLGYEAPSLVSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEILNGVE 152 (625)
Q Consensus 73 ~lr~L~l~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp~~~~ 152 (625)
++++|+++++++..+|+. .++|++|++++|+ ...+| + ...+|+.|+++ +|.+..++. +
T Consensus 39 ~l~~LdLs~~~L~~lp~~---~~~L~~L~Ls~N~---l~~lp---~---~~~~L~~L~l~--------~n~l~~l~~-l- 96 (353)
T d1jl5a_ 39 QAHELELNNLGLSSLPEL---PPHLESLVASCNS---LTELP---E---LPQSLKSLLVD--------NNNLKALSD-L- 96 (353)
T ss_dssp TCSEEECTTSCCSCCCSC---CTTCSEEECCSSC---CSSCC---C---CCTTCCEEECC--------SSCCSCCCS-C-
T ss_pred CCCEEEeCCCCCCCCCCC---CCCCCEEECCCCC---Ccccc---c---chhhhhhhhhh--------hcccchhhh-h-
Confidence 578899999988888854 4789999999875 44566 4 34688999999 777766653 1
Q ss_pred cccccceecC-CC-CCCCchhhcCCCCCceEeecCCCCCCccccccccccccceEEecCcccccccccCCCccccccCCc
Q 037953 153 KLIHLRYLKL-NL-VGDLPEKCCELLNLQTLELENSSHFKRFPQGIGKLINLRHLIFTEDLLEYMPKGIEKLTSLRTLSE 230 (625)
Q Consensus 153 ~L~~L~~L~L-~~-l~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~l~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~~ 230 (625)
.+.|++|++ ++ +..+|. ++++++|++|++++|. +...|... ..+..+.+....... +..++.++.++.+..
T Consensus 97 -p~~L~~L~L~~n~l~~lp~-~~~l~~L~~L~l~~~~-~~~~~~~~---~~l~~l~~~~~~~~~-~~~l~~l~~l~~L~l 169 (353)
T d1jl5a_ 97 -PPLLEYLGVSNNQLEKLPE-LQNSSFLKIIDVDNNS-LKKLPDLP---PSLEFIAAGNNQLEE-LPELQNLPFLTAIYA 169 (353)
T ss_dssp -CTTCCEEECCSSCCSSCCC-CTTCTTCCEEECCSSC-CSCCCCCC---TTCCEEECCSSCCSS-CCCCTTCTTCCEEEC
T ss_pred -ccccccccccccccccccc-hhhhccceeecccccc-cccccccc---ccccchhhccccccc-cccccccccceeccc
Confidence 146999999 44 889984 6889999999999988 77666543 455566664443322 234555666665554
Q ss_pred eEecCCCCcCCCcccChhccccccccccceEEeccCCCCChhHHHHhccCCCCCCCeEEEEEecccccccCCcccccccc
Q 037953 231 FVVASGGGRYGSEACKLEGLRHLNHLRGSLKVRGLGNVADVDEVKNAHLEKKKNLVRLILRFKDIDKAVKRWPEAISNEN 310 (625)
Q Consensus 231 ~~~~~~~~~~~~~~~~l~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 310 (625)
..+.... ..... .... .+...+. .... ......++.|+.++++.+...
T Consensus 170 ~~n~~~~-----~~~~~---~~~~----~l~~~~~-~~~~-----~~~~~~l~~L~~l~l~~n~~~-------------- 217 (353)
T d1jl5a_ 170 DNNSLKK-----LPDLP---LSLE----SIVAGNN-ILEE-----LPELQNLPFLTTIYADNNLLK-------------- 217 (353)
T ss_dssp CSSCCSS-----CCCCC---TTCC----EEECCSS-CCSS-----CCCCTTCTTCCEEECCSSCCS--------------
T ss_pred ccccccc-----ccccc---cccc----ccccccc-cccc-----ccccccccccccccccccccc--------------
Confidence 3332221 00000 0000 1111110 0011 112455667777777655311
Q ss_pred hhhHHHHhhcCCCCCCCcEEEEeccCCCcccCCchhhccc-----------------ccccEEEEeCCCCCCCCCCCCCC
Q 037953 311 AAKHEAICEALWPPPNLESLEIAGFRGRKMMLSTNWMASL-----------------NMLKKLRLLNCPTCEIMPPLGQL 373 (625)
Q Consensus 311 ~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~p~~l~~l-----------------~~L~~L~L~~c~~l~~l~~l~~l 373 (625)
.. .....++..+.+..+..... +.....+ ......++..+ .+..+ ...+
T Consensus 218 -----~~---~~~~~~l~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~l~~l~~~~~~~~~~~~-~~~~~--~~~~ 283 (353)
T d1jl5a_ 218 -----TL---PDLPPSLEALNVRDNYLTDL---PELPQSLTFLDVSENIFSGLSELPPNLYYLNASSN-EIRSL--CDLP 283 (353)
T ss_dssp -----SC---CSCCTTCCEEECCSSCCSCC---CCCCTTCCEEECCSSCCSEESCCCTTCCEEECCSS-CCSEE--CCCC
T ss_pred -----cc---cccccccccccccccccccc---ccccccccccccccccccccccccchhcccccccC-ccccc--cccC
Confidence 01 11233455555554443332 2111100 11122222211 11111 2346
Q ss_pred CCcceeeccccccceeeCccCCCCCCCCCCCCCCCCCCCCCCCCCCeeeccCcccccccccCCCCcccCCCccEEEEecC
Q 037953 374 PSLEILLIKDMTSVERVGDESLGIANGDHGAPSSSSVNNIAFPKLKELEFSGLQEWEDWDFRKEDITIMPQINSLSIYGC 453 (625)
Q Consensus 374 ~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c 453 (625)
++|++|+|++|. ++.+|. .+++|+.|+++++ +++.++. .+++|++|++++|
T Consensus 284 ~~L~~L~Ls~N~-l~~lp~---------------------~~~~L~~L~L~~N-~L~~l~~------~~~~L~~L~L~~N 334 (353)
T d1jl5a_ 284 PSLEELNVSNNK-LIELPA---------------------LPPRLERLIASFN-HLAEVPE------LPQNLKQLHVEYN 334 (353)
T ss_dssp TTCCEEECCSSC-CSCCCC---------------------CCTTCCEEECCSS-CCSCCCC------CCTTCCEEECCSS
T ss_pred CCCCEEECCCCc-cCcccc---------------------ccCCCCEEECCCC-cCCcccc------ccCCCCEEECcCC
Confidence 899999999975 666653 3689999999877 4665541 3578999999997
Q ss_pred CCCCcCCcCCCCCCCCCEEEEe
Q 037953 454 HKLKSLPDQLLQSSTLKTLRIN 475 (625)
Q Consensus 454 ~~l~~lp~~~~~l~~L~~L~l~ 475 (625)
+ ++++|.. ..+|+.|.+.
T Consensus 335 ~-L~~lp~~---~~~L~~L~~~ 352 (353)
T d1jl5a_ 335 P-LREFPDI---PESVEDLRMN 352 (353)
T ss_dssp C-CSSCCCC---CTTCCEEECC
T ss_pred c-CCCCCcc---ccccCeeECc
Confidence 5 9999974 4578877664
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.57 E-value=1.4e-15 Score=147.73 Aligned_cols=61 Identities=20% Similarity=0.217 Sum_probs=36.9
Q ss_pred CCCCCCcEEEEeccCCCcccCCchhhcccccccEEEEeCCCCCCCCC-CCCCCCCcceeeccccc
Q 037953 322 WPPPNLESLEIAGFRGRKMMLSTNWMASLNMLKKLRLLNCPTCEIMP-PLGQLPSLEILLIKDMT 385 (625)
Q Consensus 322 ~~~~~L~~L~L~~~~~~~~~~~p~~l~~l~~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~L~~~~ 385 (625)
..+++|+.|++++|....+. +..+..+++|++|+|++|. ++.+| .+..+++|+.|+|++|+
T Consensus 145 ~~l~~l~~l~l~~N~l~~~~--~~~~~~l~~L~~L~Ls~N~-L~~lp~~~~~~~~L~~L~L~~Np 206 (266)
T d1p9ag_ 145 TPTPKLEKLSLANNNLTELP--AGLLNGLENLDTLLLQENS-LYTIPKGFFGSHLLPFAFLHGNP 206 (266)
T ss_dssp TTCTTCCEEECTTSCCSCCC--TTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCCCSEEECCSCC
T ss_pred cccccchhcccccccccccC--ccccccccccceeecccCC-CcccChhHCCCCCCCEEEecCCC
Confidence 34456666666666555441 3445666777777777643 55666 35566777777777654
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.52 E-value=5.4e-15 Score=143.59 Aligned_cols=190 Identities=16% Similarity=0.072 Sum_probs=119.6
Q ss_pred EEEEEEcCCCCcchhhhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhhhcccccc
Q 037953 75 RHLMLVLGYEAPSLVSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEILNGVEKL 154 (625)
Q Consensus 75 r~L~l~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp~~~~~L 154 (625)
..++.+++++..+|+.+. +++++|+|++|. +....+ ..|.++++|++|+|+ +|.+..+| .++.+
T Consensus 13 ~~v~C~~~~L~~iP~~lp--~~l~~L~Ls~N~--i~~l~~---~~f~~l~~L~~L~L~--------~N~l~~l~-~~~~l 76 (266)
T d1p9ag_ 13 LEVNCDKRNLTALPPDLP--KDTTILHLSENL--LYTFSL---ATLMPYTRLTQLNLD--------RAELTKLQ-VDGTL 76 (266)
T ss_dssp CEEECTTSCCSSCCSCCC--TTCCEEECTTSC--CSEEEG---GGGTTCTTCCEEECT--------TSCCCEEE-CCSCC
T ss_pred eEEEccCCCCCeeCcCcC--cCCCEEECcCCc--CCCcCH---HHhhccccccccccc--------cccccccc-ccccc
Confidence 344555566666766543 567777777754 334444 567777777777777 77776665 35677
Q ss_pred cccceecC-CC-CCCCchhhcCCCCCceEeecCCCCCCcccc-ccccccccceEEecCccccccccc-CCCccccccCCc
Q 037953 155 IHLRYLKL-NL-VGDLPEKCCELLNLQTLELENSSHFKRFPQ-GIGKLINLRHLIFTEDLLEYMPKG-IEKLTSLRTLSE 230 (625)
Q Consensus 155 ~~L~~L~L-~~-l~~lP~~i~~L~~L~~L~L~~~~~l~~lp~-~l~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~~ 230 (625)
++|++|+| .+ +...|..+.++++|++|++++|. +..++. .+..+.++++|++.+|.+..+|.. +..+++|+.|++
T Consensus 77 ~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l 155 (266)
T d1p9ag_ 77 PVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNR-LTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL 155 (266)
T ss_dssp TTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSC-CCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred ccccccccccccccccccccccccccccccccccc-cceeeccccccccccccccccccccceeccccccccccchhccc
Confidence 77777777 33 77777777777777777777777 555443 356777777777777777777654 445666666665
Q ss_pred eEecCCCCcCCCcccChhccccccccccceEEeccCCCCChhHHHHhccCCCCCCCeEEEEEec
Q 037953 231 FVVASGGGRYGSEACKLEGLRHLNHLRGSLKVRGLGNVADVDEVKNAHLEKKKNLVRLILRFKD 294 (625)
Q Consensus 231 ~~~~~~~~~~~~~~~~l~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 294 (625)
..+.... .....+..+++|+ .|++++.. +.. ++..+..+++|+.|++++|.
T Consensus 156 ~~N~l~~-------~~~~~~~~l~~L~-~L~Ls~N~-L~~----lp~~~~~~~~L~~L~L~~Np 206 (266)
T d1p9ag_ 156 ANNNLTE-------LPAGLLNGLENLD-TLLLQENS-LYT----IPKGFFGSHLLPFAFLHGNP 206 (266)
T ss_dssp TTSCCSC-------CCTTTTTTCTTCC-EEECCSSC-CCC----CCTTTTTTCCCSEEECCSCC
T ss_pred ccccccc-------cCccccccccccc-eeecccCC-Ccc----cChhHCCCCCCCEEEecCCC
Confidence 5443332 1222344455555 56665532 222 23345677889999999885
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.51 E-value=9.5e-15 Score=143.35 Aligned_cols=140 Identities=19% Similarity=0.160 Sum_probs=96.3
Q ss_pred EEEcCCCCcchhhhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhhhc-ccccccc
Q 037953 78 MLVLGYEAPSLVSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEILN-GVEKLIH 156 (625)
Q Consensus 78 ~l~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp~-~~~~L~~ 156 (625)
...+.++..+|..+. +.+++|+|++|. +....+ .+|.++++|++|+++ +|.+..++. .+..+..
T Consensus 17 ~c~~~~L~~iP~~ip--~~~~~L~Ls~N~--i~~i~~---~~f~~l~~L~~L~ls--------~n~l~~i~~~~~~~~~~ 81 (284)
T d1ozna_ 17 SCPQQGLQAVPVGIP--AASQRIFLHGNR--ISHVPA---ASFRACRNLTILWLH--------SNVLARIDAAAFTGLAL 81 (284)
T ss_dssp ECCSSCCSSCCTTCC--TTCSEEECTTSC--CCEECT---TTTTTCTTCCEEECC--------SSCCCEECTTTTTTCTT
T ss_pred EcCCCCCCccCCCCC--CCCCEEECcCCc--CCCCCH---HHhhccccccccccc--------ccccccccccccccccc
Confidence 344455667776554 567888888865 444445 668888888888888 777666643 3666777
Q ss_pred cceecC--CC-CCCC-chhhcCCCCCceEeecCCCCCCcccc-ccccccccceEEecCccccccccc-CCCccccccCCc
Q 037953 157 LRYLKL--NL-VGDL-PEKCCELLNLQTLELENSSHFKRFPQ-GIGKLINLRHLIFTEDLLEYMPKG-IEKLTSLRTLSE 230 (625)
Q Consensus 157 L~~L~L--~~-l~~l-P~~i~~L~~L~~L~L~~~~~l~~lp~-~l~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~~ 230 (625)
++.++. +. +..+ |..+.++++|++|++++|. +..++. .+..+++|+.+++.+|.++.+|.. +..+++|+.|++
T Consensus 82 ~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l 160 (284)
T d1ozna_ 82 LEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCG-LQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFL 160 (284)
T ss_dssp CCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred ccccccccccccccccchhhcccccCCEEecCCcc-cccccccccchhcccchhhhccccccccChhHhccccchhhccc
Confidence 777776 33 6666 4557888888888888887 555544 466778888888888888877644 556677776665
Q ss_pred eEe
Q 037953 231 FVV 233 (625)
Q Consensus 231 ~~~ 233 (625)
..+
T Consensus 161 ~~N 163 (284)
T d1ozna_ 161 HGN 163 (284)
T ss_dssp CSS
T ss_pred ccC
Confidence 443
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=99.50 E-value=5.9e-15 Score=139.69 Aligned_cols=188 Identities=21% Similarity=0.210 Sum_probs=115.9
Q ss_pred HhcCCceeEEEeecCCCccccccchhhhhcccccccccceecC-CC-CCCCchhhcCCCCCceEeecCCCCCCccccccc
Q 037953 120 FDQLTCLRALRIEGTDNWELEEDQTNEILNGVEKLIHLRYLKL-NL-VGDLPEKCCELLNLQTLELENSSHFKRFPQGIG 197 (625)
Q Consensus 120 ~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp~~~~~L~~L~~L~L-~~-l~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~l~ 197 (625)
++.+.+|+.|+++ +|.+.+++ .+.++++|++|++ .+ +..++ .+.++++|+++++++|. ++.++ .++
T Consensus 37 ~~~l~~L~~L~l~--------~~~i~~l~-~l~~l~~L~~L~ls~n~i~~~~-~l~~l~~l~~l~~~~n~-~~~i~-~l~ 104 (227)
T d1h6ua2 37 QADLDGITTLSAF--------GTGVTTIE-GVQYLNNLIGLELKDNQITDLA-PLKNLTKITELELSGNP-LKNVS-AIA 104 (227)
T ss_dssp HHHHHTCCEEECT--------TSCCCCCT-TGGGCTTCCEEECCSSCCCCCG-GGTTCCSCCEEECCSCC-CSCCG-GGT
T ss_pred HHHcCCcCEEECC--------CCCCCcch-hHhcCCCCcEeecCCceeeccc-ccccccccccccccccc-ccccc-ccc
Confidence 4566667777777 66666663 4666666666666 33 55554 36666666666666665 55554 456
Q ss_pred cccccceEEecCcccccccccCCCccccccCCceEecCCCCcCCCcccChhccccccccccceEEeccCCCCChhHHHHh
Q 037953 198 KLINLRHLIFTEDLLEYMPKGIEKLTSLRTLSEFVVASGGGRYGSEACKLEGLRHLNHLRGSLKVRGLGNVADVDEVKNA 277 (625)
Q Consensus 198 ~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~ 277 (625)
++++|+.++++++....++ .+.....++ .+.+..+.. .. ..
T Consensus 105 ~l~~L~~l~l~~~~~~~~~-~~~~~~~~~--------------------------------~l~~~~~~~-~~-----~~ 145 (227)
T d1h6ua2 105 GLQSIKTLDLTSTQITDVT-PLAGLSNLQ--------------------------------VLYLDLNQI-TN-----IS 145 (227)
T ss_dssp TCTTCCEEECTTSCCCCCG-GGTTCTTCC--------------------------------EEECCSSCC-CC-----CG
T ss_pred ccccccccccccccccccc-hhccccchh--------------------------------hhhchhhhh-ch-----hh
Confidence 6666666666444333321 111222222 222222111 11 01
Q ss_pred ccCCCCCCCeEEEEEecccccccCCcccccccchhhHHHHhhcCCCCCCCcEEEEeccCCCcccCCchhhcccccccEEE
Q 037953 278 HLEKKKNLVRLILRFKDIDKAVKRWPEAISNENAAKHEAICEALWPPPNLESLEIAGFRGRKMMLSTNWMASLNMLKKLR 357 (625)
Q Consensus 278 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~p~~l~~l~~L~~L~ 357 (625)
.+..+++|+.|.++++.+. ....+..+++|+.|++++|....+ ..+..+++|++|+
T Consensus 146 ~~~~~~~L~~L~l~~n~~~--------------------~~~~l~~l~~L~~L~Ls~n~l~~l----~~l~~l~~L~~L~ 201 (227)
T d1h6ua2 146 PLAGLTNLQYLSIGNAQVS--------------------DLTPLANLSKLTTLKADDNKISDI----SPLASLPNLIEVH 201 (227)
T ss_dssp GGGGCTTCCEEECCSSCCC--------------------CCGGGTTCTTCCEEECCSSCCCCC----GGGGGCTTCCEEE
T ss_pred hhccccccccccccccccc--------------------cchhhcccccceecccCCCccCCC----hhhcCCCCCCEEE
Confidence 2445667788877766321 112366788999999999877664 3478899999999
Q ss_pred EeCCCCCCCCCCCCCCCCcceeeccc
Q 037953 358 LLNCPTCEIMPPLGQLPSLEILLIKD 383 (625)
Q Consensus 358 L~~c~~l~~l~~l~~l~~L~~L~L~~ 383 (625)
+++| .+++++.++.+++|+.|++++
T Consensus 202 Ls~N-~lt~i~~l~~l~~L~~L~lsn 226 (227)
T d1h6ua2 202 LKNN-QISDVSPLANTSNLFIVTLTN 226 (227)
T ss_dssp CTTS-CCCBCGGGTTCTTCCEEEEEE
T ss_pred CcCC-cCCCCcccccCCCCCEEEeeC
Confidence 9997 578888889999999999874
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.50 E-value=2.5e-14 Score=140.31 Aligned_cols=63 Identities=21% Similarity=0.196 Sum_probs=34.6
Q ss_pred CCCCCCCcEEEEeccCCCcccCCchhhcccccccEEEEeCCCCCCCCC-CCCCCCCcceeeccccc
Q 037953 321 LWPPPNLESLEIAGFRGRKMMLSTNWMASLNMLKKLRLLNCPTCEIMP-PLGQLPSLEILLIKDMT 385 (625)
Q Consensus 321 l~~~~~L~~L~L~~~~~~~~~~~p~~l~~l~~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~L~~~~ 385 (625)
+..+++|+.|++++|....+. +.++..+++|+.+++++|....-.| .+..+++|++|++++|.
T Consensus 149 f~~~~~L~~L~l~~N~l~~l~--~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 212 (284)
T d1ozna_ 149 FRDLGNLTHLFLHGNRISSVP--ERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANN 212 (284)
T ss_dssp TTTCTTCCEEECCSSCCCEEC--TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred hccccchhhcccccCcccccc--hhhhccccccchhhhhhccccccChhHhhhhhhcccccccccc
Confidence 445556666666666554431 3445566666666666644332222 35566666666666654
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=99.46 E-value=8e-14 Score=131.74 Aligned_cols=197 Identities=20% Similarity=0.234 Sum_probs=127.9
Q ss_pred ccchhhhhcccccccccceecC-CC-CCCCchhhcCCCCCceEeecCCCCCCccccccccccccceEEecCccccccccc
Q 037953 141 EDQTNEILNGVEKLIHLRYLKL-NL-VGDLPEKCCELLNLQTLELENSSHFKRFPQGIGKLINLRHLIFTEDLLEYMPKG 218 (625)
Q Consensus 141 ~~~l~~lp~~~~~L~~L~~L~L-~~-l~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~l~~L~~L~~L~l~~~~l~~lp~~ 218 (625)
.+.+.++. .+..+.+|++|++ +. +++++ .+.++++|++|++++|. +..+++ +.++++|++++++.+.++.++ +
T Consensus 28 ~~~~~d~~-~~~~l~~L~~L~l~~~~i~~l~-~l~~l~~L~~L~ls~n~-i~~~~~-l~~l~~l~~l~~~~n~~~~i~-~ 102 (227)
T d1h6ua2 28 KSNVTDTV-TQADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQ-ITDLAP-LKNLTKITELELSGNPLKNVS-A 102 (227)
T ss_dssp CSSTTSEE-CHHHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSC-CCCCGG-GTTCCSCCEEECCSCCCSCCG-G
T ss_pred CCCcCCcC-CHHHcCCcCEEECCCCCCCcch-hHhcCCCCcEeecCCce-eecccc-ccccccccccccccccccccc-c
Confidence 44444432 3556677777777 33 77773 57777777777777776 666543 677777777777666555553 3
Q ss_pred CCCccccccCCceEecCCCCcCCCcccChhccccccccccceEEeccCCCCChhHHHHhccCCCCCCCeEEEEEeccccc
Q 037953 219 IEKLTSLRTLSEFVVASGGGRYGSEACKLEGLRHLNHLRGSLKVRGLGNVADVDEVKNAHLEKKKNLVRLILRFKDIDKA 298 (625)
Q Consensus 219 i~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 298 (625)
+..+++|+.+. +..+.... ...+.....++.+.++.+.+.
T Consensus 103 l~~l~~L~~l~--------------------------------l~~~~~~~------~~~~~~~~~~~~l~~~~~~~~-- 142 (227)
T d1h6ua2 103 IAGLQSIKTLD--------------------------------LTSTQITD------VTPLAGLSNLQVLYLDLNQIT-- 142 (227)
T ss_dssp GTTCTTCCEEE--------------------------------CTTSCCCC------CGGGTTCTTCCEEECCSSCCC--
T ss_pred ccccccccccc--------------------------------cccccccc------cchhccccchhhhhchhhhhc--
Confidence 44444444433 22221110 012344567777777655311
Q ss_pred ccCCcccccccchhhHHHHhhcCCCCCCCcEEEEeccCCCcccCCchhhcccccccEEEEeCCCCCCCCCCCCCCCCcce
Q 037953 299 VKRWPEAISNENAAKHEAICEALWPPPNLESLEIAGFRGRKMMLSTNWMASLNMLKKLRLLNCPTCEIMPPLGQLPSLEI 378 (625)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~p~~l~~l~~L~~L~L~~c~~l~~l~~l~~l~~L~~ 378 (625)
....+..+++|+.|.++++..... ..++++++|+.|++++| .+++++.++.+++|++
T Consensus 143 ------------------~~~~~~~~~~L~~L~l~~n~~~~~----~~l~~l~~L~~L~Ls~n-~l~~l~~l~~l~~L~~ 199 (227)
T d1h6ua2 143 ------------------NISPLAGLTNLQYLSIGNAQVSDL----TPLANLSKLTTLKADDN-KISDISPLASLPNLIE 199 (227)
T ss_dssp ------------------CCGGGGGCTTCCEEECCSSCCCCC----GGGTTCTTCCEEECCSS-CCCCCGGGGGCTTCCE
T ss_pred ------------------hhhhhccccccccccccccccccc----hhhcccccceecccCCC-ccCCChhhcCCCCCCE
Confidence 112345678999999998887663 45788999999999996 6778888889999999
Q ss_pred eeccccccceeeCccCCCCCCCCCCCCCCCCCCCCCCCCCCeeeccC
Q 037953 379 LLIKDMTSVERVGDESLGIANGDHGAPSSSSVNNIAFPKLKELEFSG 425 (625)
Q Consensus 379 L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~ 425 (625)
|++++|+ ++.++. +..+++|+.|++++
T Consensus 200 L~Ls~N~-lt~i~~-------------------l~~l~~L~~L~lsn 226 (227)
T d1h6ua2 200 VHLKNNQ-ISDVSP-------------------LANTSNLFIVTLTN 226 (227)
T ss_dssp EECTTSC-CCBCGG-------------------GTTCTTCCEEEEEE
T ss_pred EECcCCc-CCCCcc-------------------cccCCCCCEEEeeC
Confidence 9999985 776653 56778888887753
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.44 E-value=1.7e-13 Score=126.55 Aligned_cols=142 Identities=20% Similarity=0.213 Sum_probs=101.9
Q ss_pred CceEEEEEEcCCCCcchhhhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhhhccc
Q 037953 72 EKLRHLMLVLGYEAPSLVSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEILNGV 151 (625)
Q Consensus 72 ~~lr~L~l~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp~~~ 151 (625)
.+++.|.+.++.+..+. .+..+++|++|++++|+ +.. ++ . ++++++|++|+++ +|.+..++ .+
T Consensus 40 ~~l~~L~l~~~~i~~l~-~l~~l~nL~~L~Ls~N~--l~~-~~---~-l~~l~~L~~L~l~--------~n~~~~~~-~l 102 (199)
T d2omxa2 40 DQVTTLQADRLGIKSID-GVEYLNNLTQINFSNNQ--LTD-IT---P-LKNLTKLVDILMN--------NNQIADIT-PL 102 (199)
T ss_dssp TTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSC--CCC-CG---G-GTTCTTCCEEECC--------SSCCCCCG-GG
T ss_pred cCCCEEECCCCCCCCcc-ccccCCCcCcCcccccc--ccC-cc---c-ccCCccccccccc--------cccccccc-cc
Confidence 56778888887776654 46778888888888865 333 33 2 7788888888888 77666665 47
Q ss_pred ccccccceecC-CC-CCCCchhhcCCCCCceEeecCCCCCCccccccccccccceEEecCcccccccccCCCccccccCC
Q 037953 152 EKLIHLRYLKL-NL-VGDLPEKCCELLNLQTLELENSSHFKRFPQGIGKLINLRHLIFTEDLLEYMPKGIEKLTSLRTLS 229 (625)
Q Consensus 152 ~~L~~L~~L~L-~~-l~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~l~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~ 229 (625)
+++++|++|++ +. ...+ ..+..+++|+.|++++|. +..+| .+..+++|++|++.+|.++.++ .++++++|+.|+
T Consensus 103 ~~l~~L~~L~l~~~~~~~~-~~~~~l~~L~~L~l~~n~-l~~~~-~l~~~~~L~~L~l~~n~l~~l~-~l~~l~~L~~L~ 178 (199)
T d2omxa2 103 ANLTNLTGLTLFNNQITDI-DPLKNLTNLNRLELSSNT-ISDIS-ALSGLTSLQQLNFSSNQVTDLK-PLANLTTLERLD 178 (199)
T ss_dssp TTCTTCSEEECCSSCCCCC-GGGTTCTTCSEEECCSSC-CCCCG-GGTTCTTCSEEECCSSCCCCCG-GGTTCTTCCEEE
T ss_pred ccccccccccccccccccc-cccchhhhhHHhhhhhhh-hcccc-cccccccccccccccccccCCc-cccCCCCCCEEE
Confidence 78888888888 44 5555 357778888888888887 76665 4777888888888777777765 467777777777
Q ss_pred ceEec
Q 037953 230 EFVVA 234 (625)
Q Consensus 230 ~~~~~ 234 (625)
+.++.
T Consensus 179 ls~N~ 183 (199)
T d2omxa2 179 ISSNK 183 (199)
T ss_dssp CCSSC
T ss_pred CCCCC
Confidence 65543
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.41 E-value=4.1e-13 Score=125.01 Aligned_cols=140 Identities=18% Similarity=0.215 Sum_probs=88.9
Q ss_pred CceEEEEEEcCCCCcchhhhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhhhccc
Q 037953 72 EKLRHLMLVLGYEAPSLVSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEILNGV 151 (625)
Q Consensus 72 ~~lr~L~l~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp~~~ 151 (625)
.++++|.+.++.+..++ .+..+++|++|++++|. +.. ++ . ++.+++|++|+++ +|.+..+| .+
T Consensus 46 ~~L~~L~l~~~~i~~l~-~l~~l~~L~~L~L~~n~--i~~-l~---~-~~~l~~L~~L~l~--------~n~i~~l~-~l 108 (210)
T d1h6ta2 46 NSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNK--LTD-IK---P-LANLKNLGWLFLD--------ENKVKDLS-SL 108 (210)
T ss_dssp HTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSC--CCC-CG---G-GTTCTTCCEEECC--------SSCCCCGG-GG
T ss_pred cCccEEECcCCCCCCch-hHhhCCCCCEEeCCCcc--ccC-cc---c-cccCccccccccc--------cccccccc-cc
Confidence 35677777776665554 35667777777777754 223 22 1 5667777777777 66666666 46
Q ss_pred ccccccceecC-CC-CCCCchhhcCCCCCceEeecCCCCCCccccccccccccceEEecCcccccccccCCCccccccCC
Q 037953 152 EKLIHLRYLKL-NL-VGDLPEKCCELLNLQTLELENSSHFKRFPQGIGKLINLRHLIFTEDLLEYMPKGIEKLTSLRTLS 229 (625)
Q Consensus 152 ~~L~~L~~L~L-~~-l~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~l~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~ 229 (625)
..+++|+.|++ +. +..++ .+..+++|+.+++++|. +...+ .+.++++|+++++++|.+..++ .++++++|++|+
T Consensus 109 ~~l~~L~~L~l~~~~~~~~~-~l~~l~~l~~l~~~~n~-l~~~~-~~~~l~~L~~l~l~~n~l~~i~-~l~~l~~L~~L~ 184 (210)
T d1h6ta2 109 KDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNK-ITDIT-VLSRLTKLDTLSLEDNQISDIV-PLAGLTKLQNLY 184 (210)
T ss_dssp TTCTTCCEEECTTSCCCCCG-GGGGCTTCCEEECCSSC-CCCCG-GGGGCTTCSEEECCSSCCCCCG-GGTTCTTCCEEE
T ss_pred cccccccccccccccccccc-ccccccccccccccccc-ccccc-cccccccccccccccccccccc-cccCCCCCCEEE
Confidence 67777777777 33 55553 56677777777777776 55543 4666777777777666666654 355666666665
Q ss_pred ceE
Q 037953 230 EFV 232 (625)
Q Consensus 230 ~~~ 232 (625)
+..
T Consensus 185 Ls~ 187 (210)
T d1h6ta2 185 LSK 187 (210)
T ss_dssp CCS
T ss_pred CCC
Confidence 543
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.40 E-value=4.9e-13 Score=127.51 Aligned_cols=63 Identities=16% Similarity=0.082 Sum_probs=43.3
Q ss_pred CCcEEEEeccCCCcccCCchhhcccccccEEEEeCCCCCCCCCC--CCCCCCcceeeccccccceeeCc
Q 037953 326 NLESLEIAGFRGRKMMLSTNWMASLNMLKKLRLLNCPTCEIMPP--LGQLPSLEILLIKDMTSVERVGD 392 (625)
Q Consensus 326 ~L~~L~L~~~~~~~~~~~p~~l~~l~~L~~L~L~~c~~l~~l~~--l~~l~~L~~L~L~~~~~l~~l~~ 392 (625)
.++.|++.++....+ +......++++.+....++.++.+|. +.++++|++|++++++ ++.+|.
T Consensus 154 ~l~~L~l~~n~l~~i---~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~-l~~l~~ 218 (242)
T d1xwdc1 154 ESVILWLNKNGIQEI---HNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTR-IHSLPS 218 (242)
T ss_dssp SCEEEECCSSCCCEE---CTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSC-CCCCCS
T ss_pred cceeeeccccccccc---ccccccchhhhccccccccccccccHHHhcCCCCCCEEECCCCc-CCccCH
Confidence 556666666665555 55555566777776666677777774 7788999999998865 666654
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.34 E-value=1.7e-12 Score=120.72 Aligned_cols=142 Identities=23% Similarity=0.254 Sum_probs=119.9
Q ss_pred CCCCceEEEEEEcCCCCcchhhhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhhh
Q 037953 69 TCPEKLRHLMLVLGYEAPSLVSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEIL 148 (625)
Q Consensus 69 ~~~~~lr~L~l~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp 148 (625)
...+++++|++++|.+..+++ +..+++|++|++++|+ ...+| .+..+++|+.|+++ +|.+..++
T Consensus 65 ~~l~~L~~L~L~~n~i~~l~~-~~~l~~L~~L~l~~n~---i~~l~----~l~~l~~L~~L~l~--------~~~~~~~~ 128 (210)
T d1h6ta2 65 QYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENK---VKDLS----SLKDLKKLKSLSLE--------HNGISDIN 128 (210)
T ss_dssp GGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC---CCCGG----GGTTCTTCCEEECT--------TSCCCCCG
T ss_pred hhCCCCCEEeCCCccccCccc-cccCcccccccccccc---ccccc----cccccccccccccc--------cccccccc
Confidence 457799999999999987774 6789999999999976 33444 38899999999999 77766665
Q ss_pred cccccccccceecC-CC-CCCCchhhcCCCCCceEeecCCCCCCccccccccccccceEEecCcccccccccCCCccccc
Q 037953 149 NGVEKLIHLRYLKL-NL-VGDLPEKCCELLNLQTLELENSSHFKRFPQGIGKLINLRHLIFTEDLLEYMPKGIEKLTSLR 226 (625)
Q Consensus 149 ~~~~~L~~L~~L~L-~~-l~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~l~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~ 226 (625)
.+..+++|+.+++ .+ +...+ .+.++++|+++++++|. +..++ .++++++|++|++++|.++.+| .+.++++|+
T Consensus 129 -~l~~l~~l~~l~~~~n~l~~~~-~~~~l~~L~~l~l~~n~-l~~i~-~l~~l~~L~~L~Ls~N~i~~l~-~l~~l~~L~ 203 (210)
T d1h6ta2 129 -GLVHLPQLESLYLGNNKITDIT-VLSRLTKLDTLSLEDNQ-ISDIV-PLAGLTKLQNLYLSKNHISDLR-ALAGLKNLD 203 (210)
T ss_dssp -GGGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSC-CCCCG-GGTTCTTCCEEECCSSCCCBCG-GGTTCTTCS
T ss_pred -cccccccccccccccccccccc-ccccccccccccccccc-ccccc-cccCCCCCCEEECCCCCCCCCh-hhcCCCCCC
Confidence 6889999999999 44 77764 68899999999999998 88886 4899999999999999999987 588899999
Q ss_pred cCCce
Q 037953 227 TLSEF 231 (625)
Q Consensus 227 ~L~~~ 231 (625)
.|+++
T Consensus 204 ~L~Ls 208 (210)
T d1h6ta2 204 VLELF 208 (210)
T ss_dssp EEEEE
T ss_pred EEEcc
Confidence 88765
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.33 E-value=2e-12 Score=119.16 Aligned_cols=139 Identities=20% Similarity=0.241 Sum_probs=116.1
Q ss_pred CCCCceEEEEEEcCCCCcchhhhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhhh
Q 037953 69 TCPEKLRHLMLVLGYEAPSLVSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEIL 148 (625)
Q Consensus 69 ~~~~~lr~L~l~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp 148 (625)
...+++++|++++|.+..+++ +.++++|++|++++|. ...++ .++++++|+.|+++ ++....++
T Consensus 59 ~~l~nL~~L~Ls~N~l~~~~~-l~~l~~L~~L~l~~n~---~~~~~----~l~~l~~L~~L~l~--------~~~~~~~~ 122 (199)
T d2omxa2 59 EYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQ---IADIT----PLANLTNLTGLTLF--------NNQITDID 122 (199)
T ss_dssp GGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC---CCCCG----GGTTCTTCSEEECC--------SSCCCCCG
T ss_pred ccCCCcCcCccccccccCccc-ccCCcccccccccccc---ccccc----cccccccccccccc--------cccccccc
Confidence 346799999999999977765 7899999999999976 33343 38899999999999 66655554
Q ss_pred cccccccccceecC-CC-CCCCchhhcCCCCCceEeecCCCCCCccccccccccccceEEecCcccccccccCCCccccc
Q 037953 149 NGVEKLIHLRYLKL-NL-VGDLPEKCCELLNLQTLELENSSHFKRFPQGIGKLINLRHLIFTEDLLEYMPKGIEKLTSLR 226 (625)
Q Consensus 149 ~~~~~L~~L~~L~L-~~-l~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~l~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~ 226 (625)
.+..+++|++|++ ++ +..+| .+..+++|+.|++.+|. +..++ .++++++|++|++++|.++.+| .++++++|+
T Consensus 123 -~~~~l~~L~~L~l~~n~l~~~~-~l~~~~~L~~L~l~~n~-l~~l~-~l~~l~~L~~L~ls~N~i~~i~-~l~~L~~L~ 197 (199)
T d2omxa2 123 -PLKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLNFSSNQ-VTDLK-PLANLTTLERLDISSNKVSDIS-VLAKLTNLE 197 (199)
T ss_dssp -GGTTCTTCSEEECCSSCCCCCG-GGTTCTTCSEEECCSSC-CCCCG-GGTTCTTCCEEECCSSCCCCCG-GGGGCTTCS
T ss_pred -ccchhhhhHHhhhhhhhhcccc-ccccccccccccccccc-ccCCc-cccCCCCCCEEECCCCCCCCCc-cccCCCCCC
Confidence 5888999999999 44 88876 68999999999999998 88886 4899999999999888998886 577777777
Q ss_pred cC
Q 037953 227 TL 228 (625)
Q Consensus 227 ~L 228 (625)
+|
T Consensus 198 ~L 199 (199)
T d2omxa2 198 SL 199 (199)
T ss_dssp EE
T ss_pred cC
Confidence 54
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.33 E-value=5e-13 Score=118.55 Aligned_cols=127 Identities=20% Similarity=0.199 Sum_probs=97.5
Q ss_pred hhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhhhcccccccccceecC-CC-CCC
Q 037953 90 SIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEILNGVEKLIHLRYLKL-NL-VGD 167 (625)
Q Consensus 90 ~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp~~~~~L~~L~~L~L-~~-l~~ 167 (625)
.+.++.++|+|+|++|+ ...+| ..+..+++|++|+|+ +|.+..++ .|..+++|++|++ ++ +..
T Consensus 13 ~~~n~~~lr~L~L~~n~---I~~i~---~~~~~l~~L~~L~Ls--------~N~i~~l~-~~~~l~~L~~L~ls~N~i~~ 77 (162)
T d1a9na_ 13 QYTNAVRDRELDLRGYK---IPVIE---NLGATLDQFDAIDFS--------DNEIRKLD-GFPLLRRLKTLLVNNNRICR 77 (162)
T ss_dssp EEECTTSCEEEECTTSC---CCSCC---CGGGGTTCCSEEECC--------SSCCCEEC-CCCCCSSCCEEECCSSCCCE
T ss_pred hccCcCcCcEEECCCCC---CCccC---ccccccccCCEEECC--------CCCCCccC-CcccCcchhhhhcccccccC
Confidence 34567788899999876 44455 666788889999999 88888885 5888889999999 44 888
Q ss_pred Cchhh-cCCCCCceEeecCCCCCCcccc--ccccccccceEEecCcccccccc----cCCCccccccCCceE
Q 037953 168 LPEKC-CELLNLQTLELENSSHFKRFPQ--GIGKLINLRHLIFTEDLLEYMPK----GIEKLTSLRTLSEFV 232 (625)
Q Consensus 168 lP~~i-~~L~~L~~L~L~~~~~l~~lp~--~l~~L~~L~~L~l~~~~l~~lp~----~i~~L~~L~~L~~~~ 232 (625)
+|..+ ..+++|++|++++|. +..++. .+..+++|++|++.+|.+...|. .+..+++|+.|+...
T Consensus 78 l~~~~~~~l~~L~~L~L~~N~-i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD~~~ 148 (162)
T d1a9na_ 78 IGEGLDQALPDLTELILTNNS-LVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQK 148 (162)
T ss_dssp ECSCHHHHCTTCCEEECCSCC-CCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEE
T ss_pred CCccccccccccccceecccc-ccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeCCCC
Confidence 87654 578899999999998 877764 47888899999998888877764 256677777777543
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.32 E-value=1.9e-12 Score=109.12 Aligned_cols=102 Identities=19% Similarity=0.130 Sum_probs=78.3
Q ss_pred eEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhhhcccccccccceecC-CC-CCCCchhhcCC
Q 037953 98 RSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEILNGVEKLIHLRYLKL-NL-VGDLPEKCCEL 175 (625)
Q Consensus 98 r~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp~~~~~L~~L~~L~L-~~-l~~lP~~i~~L 175 (625)
|+|++++|. ...++ . ++.+++|++|+++ +|.+..+|+.++.+++|++|++ ++ +..+| .++++
T Consensus 1 R~L~Ls~n~---l~~l~---~-l~~l~~L~~L~ls--------~N~l~~lp~~~~~l~~L~~L~l~~N~i~~l~-~~~~l 64 (124)
T d1dcea3 1 RVLHLAHKD---LTVLC---H-LEQLLLVTHLDLS--------HNRLRALPPALAALRCLEVLQASDNALENVD-GVANL 64 (124)
T ss_dssp SEEECTTSC---CSSCC---C-GGGGTTCCEEECC--------SSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTC
T ss_pred CEEEcCCCC---CCCCc---c-cccCCCCCEEECC--------CCccCcchhhhhhhhcccccccccccccccC-ccccc
Confidence 678888865 33444 3 7788888888888 8888888877888888888888 44 88886 58888
Q ss_pred CCCceEeecCCCCCCcccc--ccccccccceEEecCccccccc
Q 037953 176 LNLQTLELENSSHFKRFPQ--GIGKLINLRHLIFTEDLLEYMP 216 (625)
Q Consensus 176 ~~L~~L~L~~~~~l~~lp~--~l~~L~~L~~L~l~~~~l~~lp 216 (625)
++|++|++++|. +..+|. .++++++|++|++++|.+...+
T Consensus 65 ~~L~~L~l~~N~-i~~~~~~~~l~~~~~L~~L~l~~N~i~~~~ 106 (124)
T d1dcea3 65 PRLQELLLCNNR-LQQSAAIQPLVSCPRLVLLNLQGNSLCQEE 106 (124)
T ss_dssp SSCCEEECCSSC-CCSSSTTGGGGGCTTCCEEECTTSGGGGSS
T ss_pred cccCeEECCCCc-cCCCCCchhhcCCCCCCEEECCCCcCCcCc
Confidence 888888888887 777763 4778888888888777776554
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.23 E-value=5.4e-12 Score=106.28 Aligned_cols=114 Identities=20% Similarity=0.165 Sum_probs=94.1
Q ss_pred EEEEEEcCCCCcchhhhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhhhcccccc
Q 037953 75 RHLMLVLGYEAPSLVSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEILNGVEKL 154 (625)
Q Consensus 75 r~L~l~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp~~~~~L 154 (625)
|.|++++|++..++ .+..+++|++|++++|. ...+| ..++.+++|++|+++ +|.+..+| .++++
T Consensus 1 R~L~Ls~n~l~~l~-~l~~l~~L~~L~ls~N~---l~~lp---~~~~~l~~L~~L~l~--------~N~i~~l~-~~~~l 64 (124)
T d1dcea3 1 RVLHLAHKDLTVLC-HLEQLLLVTHLDLSHNR---LRALP---PALAALRCLEVLQAS--------DNALENVD-GVANL 64 (124)
T ss_dssp SEEECTTSCCSSCC-CGGGGTTCCEEECCSSC---CCCCC---GGGGGCTTCCEEECC--------SSCCCCCG-GGTTC
T ss_pred CEEEcCCCCCCCCc-ccccCCCCCEEECCCCc---cCcch---hhhhhhhcccccccc--------cccccccC-ccccc
Confidence 56889999998776 47899999999999976 45667 779999999999999 99999987 59999
Q ss_pred cccceecC-CC-CCCCc--hhhcCCCCCceEeecCCCCCCcccc---c-cccccccceE
Q 037953 155 IHLRYLKL-NL-VGDLP--EKCCELLNLQTLELENSSHFKRFPQ---G-IGKLINLRHL 205 (625)
Q Consensus 155 ~~L~~L~L-~~-l~~lP--~~i~~L~~L~~L~L~~~~~l~~lp~---~-l~~L~~L~~L 205 (625)
++|++|++ ++ +..+| ..++.+++|++|++++|. +...+. . +..+++|+.|
T Consensus 65 ~~L~~L~l~~N~i~~~~~~~~l~~~~~L~~L~l~~N~-i~~~~~~~~~l~~~lp~L~~L 122 (124)
T d1dcea3 65 PRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNS-LCQEEGIQERLAEMLPSVSSI 122 (124)
T ss_dssp SSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSG-GGGSSSCTTHHHHHCTTCSEE
T ss_pred cccCeEECCCCccCCCCCchhhcCCCCCCEEECCCCc-CCcCccHHHHHHHHCcCcceE
Confidence 99999999 44 88876 468999999999999998 765542 2 3446666665
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.23 E-value=7.9e-13 Score=129.19 Aligned_cols=114 Identities=18% Similarity=0.200 Sum_probs=72.6
Q ss_pred cccccccceEEeccCCCCChhHHHHhcc-CCCCCCCeEEEEEecccccccCCcccccccchhhHHHHhhcCCCCCCCcEE
Q 037953 252 HLNHLRGSLKVRGLGNVADVDEVKNAHL-EKKKNLVRLILRFKDIDKAVKRWPEAISNENAAKHEAICEALWPPPNLESL 330 (625)
Q Consensus 252 ~L~~L~~~L~l~~~~~~~~~~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L 330 (625)
++++|+ .|.+++|..+.+. .....+ ..+++|+.|+++++. ..+ ....+......+++|++|
T Consensus 119 ~~~~L~-~L~ls~c~~~~~~--~~~~~~~~~~~~L~~L~l~~~~---------~~i------~~~~l~~l~~~~~~L~~L 180 (284)
T d2astb2 119 SCSRLD-ELNLSWCFDFTEK--HVQVAVAHVSETITQLNLSGYR---------KNL------QKSDLSTLVRRCPNLVHL 180 (284)
T ss_dssp HCTTCC-EEECCCCTTCCHH--HHHHHHHHSCTTCCEEECCSCG---------GGS------CHHHHHHHHHHCTTCSEE
T ss_pred HHHhcc-ccccccccccccc--cchhhhcccccccchhhhcccc---------ccc------cccccccccccccccccc
Confidence 344555 6667666554431 121122 334688888887542 111 123344444567899999
Q ss_pred EEeccCCCcccCCchhhcccccccEEEEeCCCCCCC--CCCCCCCCCcceeecccc
Q 037953 331 EIAGFRGRKMMLSTNWMASLNMLKKLRLLNCPTCEI--MPPLGQLPSLEILLIKDM 384 (625)
Q Consensus 331 ~L~~~~~~~~~~~p~~l~~l~~L~~L~L~~c~~l~~--l~~l~~l~~L~~L~L~~~ 384 (625)
++++|...+.. .+..+..+++|++|++++|..+++ +..++++|+|+.|++++|
T Consensus 181 ~L~~~~~itd~-~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~ 235 (284)
T d2astb2 181 DLSDSVMLKND-CFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 235 (284)
T ss_dssp ECTTCTTCCGG-GGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred ccccccCCCch-hhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence 99987654310 055677889999999999987764 335778899999999887
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.22 E-value=4.2e-11 Score=113.71 Aligned_cols=53 Identities=13% Similarity=0.202 Sum_probs=36.5
Q ss_pred ceecC-CC-CCCCchhhcCCCCCceEeecCCCCCCccccc-cccccccceEEecCcccc
Q 037953 158 RYLKL-NL-VGDLPEKCCELLNLQTLELENSSHFKRFPQG-IGKLINLRHLIFTEDLLE 213 (625)
Q Consensus 158 ~~L~L-~~-l~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~-l~~L~~L~~L~l~~~~l~ 213 (625)
++++. +. +..+|..+. +++++|++++|. ++.+|.. |.++++|++|+++.|.+.
T Consensus 11 ~~i~c~~~~l~~iP~~l~--~~l~~L~Ls~n~-i~~l~~~~f~~l~~L~~L~ls~n~~~ 66 (242)
T d1xwdc1 11 RVFLCQESKVTEIPSDLP--RNAIELRFVLTK-LRVIQKGAFSGFGDLEKIEISQNDVL 66 (242)
T ss_dssp SEEEEESCSCSSCCSCSC--SCCSEEEEESCC-CCEECTTTTTTCTTCCEEEEESCTTC
T ss_pred CEEEEeCCCCCCcCCCCC--CCCCEEECcCCc-CCccChhHhhccchhhhhhhcccccc
Confidence 45555 33 777776553 477888888887 7777764 677888888888655543
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.21 E-value=7.2e-13 Score=129.50 Aligned_cols=166 Identities=19% Similarity=0.204 Sum_probs=93.4
Q ss_pred HhccCCCCCCCeEEEEEecccccccCCcccccccchhhHHHHhhcCCCCCCCcEEEEeccCCCcccCCchhhcccccccE
Q 037953 276 NAHLEKKKNLVRLILRFKDIDKAVKRWPEAISNENAAKHEAICEALWPPPNLESLEIAGFRGRKMMLSTNWMASLNMLKK 355 (625)
Q Consensus 276 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~p~~l~~l~~L~~ 355 (625)
...+..+++|++|+++++.+ ....+..+..+++|++|++++|...+...+......+++|++
T Consensus 64 ~~l~~~c~~L~~L~L~~~~l------------------~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~ 125 (284)
T d2astb2 64 HGILSQCSKLQNLSLEGLRL------------------SDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDE 125 (284)
T ss_dssp HHHHTTBCCCSEEECTTCBC------------------CHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCE
T ss_pred HHHHHhCCCcccccccccCC------------------CcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccc
Confidence 34456667777777765542 134445556667777777777654431000122336677777
Q ss_pred EEEeCCCCCCC--CC-CC-CCCCCcceeeccccc-cceeeCccCCCCCCCCCCCCCCCCCCCCCCCCCCeeeccCccccc
Q 037953 356 LRLLNCPTCEI--MP-PL-GQLPSLEILLIKDMT-SVERVGDESLGIANGDHGAPSSSSVNNIAFPKLKELEFSGLQEWE 430 (625)
Q Consensus 356 L~L~~c~~l~~--l~-~l-~~l~~L~~L~L~~~~-~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~ 430 (625)
|++++|..+.+ +. .+ ...++|+.|++++|. .+..-. +..+ ...+|+|++|++++|..++
T Consensus 126 L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~--l~~l--------------~~~~~~L~~L~L~~~~~it 189 (284)
T d2astb2 126 LNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSD--LSTL--------------VRRCPNLVHLDLSDSVMLK 189 (284)
T ss_dssp EECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHH--HHHH--------------HHHCTTCSEEECTTCTTCC
T ss_pred cccccccccccccchhhhcccccccchhhhccccccccccc--cccc--------------ccccccccccccccccCCC
Confidence 77777765543 11 11 224667777777653 122110 0000 3456777777777776655
Q ss_pred ccccCCCCcccCCCccEEEEecCCCCCc-CCcCCCCCCCCCEEEEecC
Q 037953 431 DWDFRKEDITIMPQINSLSIYGCHKLKS-LPDQLLQSSTLKTLRINRC 477 (625)
Q Consensus 431 ~~~~~~~~~~~l~~L~~L~l~~c~~l~~-lp~~~~~l~~L~~L~l~~c 477 (625)
.-.+.. +..+++|++|++++|+.++. -...+.++++|+.|++++|
T Consensus 190 d~~~~~--l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~ 235 (284)
T d2astb2 190 NDCFQE--FFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 235 (284)
T ss_dssp GGGGGG--GGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred chhhhh--hcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence 433222 33577788888888776654 2233455777888888777
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.20 E-value=4.6e-12 Score=112.18 Aligned_cols=121 Identities=21% Similarity=0.076 Sum_probs=102.8
Q ss_pred CCceEEEEEEcCCCCcchhhhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhhhcc
Q 037953 71 PEKLRHLMLVLGYEAPSLVSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEILNG 150 (625)
Q Consensus 71 ~~~lr~L~l~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp~~ 150 (625)
+.++|.|++++|++..++..+..+++|++|++++|. ...++ . |+.+++|++|+++ +|.+..+|..
T Consensus 17 ~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~---i~~l~---~-~~~l~~L~~L~ls--------~N~i~~l~~~ 81 (162)
T d1a9na_ 17 AVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNE---IRKLD---G-FPLLRRLKTLLVN--------NNRICRIGEG 81 (162)
T ss_dssp TTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSC---CCEEC---C-CCCCSSCCEEECC--------SSCCCEECSC
T ss_pred cCcCcEEECCCCCCCccCccccccccCCEEECCCCC---CCccC---C-cccCcchhhhhcc--------cccccCCCcc
Confidence 457999999999998888767789999999999986 33343 3 7899999999999 9999888765
Q ss_pred -cccccccceecC-CC-CCCCch--hhcCCCCCceEeecCCCCCCcccc----ccccccccceEEe
Q 037953 151 -VEKLIHLRYLKL-NL-VGDLPE--KCCELLNLQTLELENSSHFKRFPQ----GIGKLINLRHLIF 207 (625)
Q Consensus 151 -~~~L~~L~~L~L-~~-l~~lP~--~i~~L~~L~~L~L~~~~~l~~lp~----~l~~L~~L~~L~l 207 (625)
+..+++|++|++ .+ +..+++ .+..+++|++|++++|. +...|. .++.+++|++||.
T Consensus 82 ~~~~l~~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~-i~~~~~~r~~~i~~lp~L~~LD~ 146 (162)
T d1a9na_ 82 LDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDF 146 (162)
T ss_dssp HHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETT
T ss_pred ccccccccccceeccccccccccccccccccccchhhcCCCc-cccccchHHHHHHHCCCcCeeCC
Confidence 568999999999 44 888874 68899999999999998 888874 3788999999985
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=99.17 E-value=4.1e-13 Score=123.45 Aligned_cols=129 Identities=16% Similarity=0.089 Sum_probs=102.7
Q ss_pred CceEEEEEEcC--CCCcchhhhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhhhc
Q 037953 72 EKLRHLMLVLG--YEAPSLVSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEILN 149 (625)
Q Consensus 72 ~~lr~L~l~~~--~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp~ 149 (625)
...+.+.+.+. .++.++.++..+++|++|+|++|. ...++ . +.++++|++|+|+ +|.+..+|.
T Consensus 23 ~~~~~~~l~~~~~~i~~l~~sl~~L~~L~~L~Ls~n~---I~~i~---~-l~~l~~L~~L~Ls--------~N~i~~i~~ 87 (198)
T d1m9la_ 23 TEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNN---IEKIS---S-LSGMENLRILSLG--------RNLIKKIEN 87 (198)
T ss_dssp TTCSCEECCBCCTTCCCCHHHHHHTTTCCEEECSEEE---ESCCC---C-HHHHTTCCEEECC--------EEEECSCSS
T ss_pred cccceeeeecccCchhhhhhHHhcccccceeECcccC---CCCcc---c-ccCCccccChhhc--------ccccccccc
Confidence 34455555554 356778889999999999999976 33444 3 8899999999999 898888886
Q ss_pred ccccccccceecC-CC-CCCCchhhcCCCCCceEeecCCCCCCcccc--ccccccccceEEecCcccccccc
Q 037953 150 GVEKLIHLRYLKL-NL-VGDLPEKCCELLNLQTLELENSSHFKRFPQ--GIGKLINLRHLIFTEDLLEYMPK 217 (625)
Q Consensus 150 ~~~~L~~L~~L~L-~~-l~~lP~~i~~L~~L~~L~L~~~~~l~~lp~--~l~~L~~L~~L~l~~~~l~~lp~ 217 (625)
.+..+++|++|++ ++ +..++ .+.++++|++|++++|. ++.++. .++.+++|++|++++|.+...+.
T Consensus 88 ~~~~~~~L~~L~l~~N~i~~l~-~~~~l~~L~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~ 157 (198)
T d1m9la_ 88 LDAVADTLEELWISYNQIASLS-GIEKLVNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGNPLYNDYK 157 (198)
T ss_dssp HHHHHHHCCEEECSEEECCCHH-HHHHHHHSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECSSHHHHHHC
T ss_pred cccccccccccccccccccccc-cccccccccccccccch-hccccccccccCCCccceeecCCCccccCcc
Confidence 6667788999999 44 88875 68899999999999998 888764 58899999999998887765543
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.12 E-value=3.3e-11 Score=110.08 Aligned_cols=123 Identities=20% Similarity=0.202 Sum_probs=88.8
Q ss_pred EEEEEcCCCCcchhhhccCCcceEEEeecccCCccc-cCchhhHHHhcCCceeEEEeecCCCccccccchhhh-hccccc
Q 037953 76 HLMLVLGYEAPSLVSIFNAIKLRSLILFYWIPNLDA-MLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEI-LNGVEK 153 (625)
Q Consensus 76 ~L~l~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~-~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~l-p~~~~~ 153 (625)
.++.+++++..+|..+. +++++|+|++|. +.. ..+ ..|.++++|+.|+|+ +|.+..+ +..+..
T Consensus 12 ~v~Cs~~~L~~iP~~lp--~~l~~L~Ls~N~--i~~~~~~---~~f~~l~~L~~L~L~--------~N~i~~~~~~~~~~ 76 (192)
T d1w8aa_ 12 TVDCTGRGLKEIPRDIP--LHTTELLLNDNE--LGRISSD---GLFGRLPHLVKLELK--------RNQLTGIEPNAFEG 76 (192)
T ss_dssp EEECTTSCCSSCCSCCC--TTCSEEECCSCC--CCSBCCS---CSGGGCTTCCEEECC--------SSCCCCBCTTTTTT
T ss_pred EEEEeCCCcCccCCCCC--CCCCEEEeCCCC--Ccccccc---cccCCCceEeeeecc--------cccccccccccccc
Confidence 45666677777776653 678888888865 322 233 567888888888888 7776655 455777
Q ss_pred ccccceecC-CC-CCCCch-hhcCCCCCceEeecCCCCCCccccc-cccccccceEEecCccccc
Q 037953 154 LIHLRYLKL-NL-VGDLPE-KCCELLNLQTLELENSSHFKRFPQG-IGKLINLRHLIFTEDLLEY 214 (625)
Q Consensus 154 L~~L~~L~L-~~-l~~lP~-~i~~L~~L~~L~L~~~~~l~~lp~~-l~~L~~L~~L~l~~~~l~~ 214 (625)
+++|++|+| .+ +..+|. .+.++++|++|+|++|. ++.+|++ |..+++|++|+++.|.+..
T Consensus 77 ~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~-l~~i~~~~f~~l~~L~~l~L~~N~~~~ 140 (192)
T d1w8aa_ 77 ASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQ-ISCVMPGSFEHLNSLTSLNLASNPFNC 140 (192)
T ss_dssp CTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSC-CCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred ccccceeeeccccccccCHHHHhCCCcccccccCCcc-ccccCHHHhcCCccccccccccccccc
Confidence 888888888 44 777764 46778888888888887 7777665 6778888888887776544
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.03 E-value=7.6e-12 Score=130.51 Aligned_cols=362 Identities=16% Similarity=0.102 Sum_probs=176.2
Q ss_pred CceEEEEEEcCCCCc--chhhhccCCcceEEEeecccCCcc--ccCchhhHHHhcCCceeEEEeecCCCccccccchhh-
Q 037953 72 EKLRHLMLVLGYEAP--SLVSIFNAIKLRSLILFYWIPNLD--AMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNE- 146 (625)
Q Consensus 72 ~~lr~L~l~~~~~~~--~~~~~~~l~~Lr~L~L~~~~~~~~--~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~- 146 (625)
.+++.|+++++.+.. +.+-++.++++|+|+|++|..... ..++ ..+..+++|++|||+ +|.++.
T Consensus 2 ~~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~---~~L~~~~~L~~LdLs--------~N~i~~~ 70 (460)
T d1z7xw1 2 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDIS---SALRVNPALAELNLR--------SNELGDV 70 (460)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHH---HHHHTCTTCCEEECT--------TCCCHHH
T ss_pred CCCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHH---HHHhcCCCCCEEECc--------CCcCChH
Confidence 367888898888843 345567788888999998852111 1233 667888889999998 776543
Q ss_pred ----hhccccc-ccccceecC--CCCCC-----CchhhcCCCCCceEeecCCCCCCccc-----cccccc-cccceEEec
Q 037953 147 ----ILNGVEK-LIHLRYLKL--NLVGD-----LPEKCCELLNLQTLELENSSHFKRFP-----QGIGKL-INLRHLIFT 208 (625)
Q Consensus 147 ----lp~~~~~-L~~L~~L~L--~~l~~-----lP~~i~~L~~L~~L~L~~~~~l~~lp-----~~l~~L-~~L~~L~l~ 208 (625)
+...+.. ..+|++|+| |.++. ++..+..+++|++|++++|. ++..+ ..+... .........
T Consensus 71 ~~~~l~~~l~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~-i~~~~~~~l~~~l~~~~~~~~~~~~~ 149 (460)
T d1z7xw1 71 GVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLE 149 (460)
T ss_dssp HHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECT
T ss_pred HHHHHHHHHhcCCCCCCEEECCCCCccccccccccchhhcccccccccccccc-chhhhhhhhhhccccccccccccccc
Confidence 3333322 346888888 33543 44566778888888888887 55321 111111 112222221
Q ss_pred Cccccccc-----ccCCCccccccCCceEecCCCCcCCCcccChhcccccc-ccccceEEeccCCCCChhHHHHhccCCC
Q 037953 209 EDLLEYMP-----KGIEKLTSLRTLSEFVVASGGGRYGSEACKLEGLRHLN-HLRGSLKVRGLGNVADVDEVKNAHLEKK 282 (625)
Q Consensus 209 ~~~l~~lp-----~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~-~L~~~L~l~~~~~~~~~~~~~~~~l~~l 282 (625)
........ ..+.....++.+.+....... .........+.... ... .+....+.............+...
T Consensus 150 ~~~~~~~~~~~~~~~l~~~~~~~~~~ls~~~~~~---~~~~~~~~~l~~~~~~~~-~l~~~~~~~~~~~~~~~~~~l~~~ 225 (460)
T d1z7xw1 150 YCSLSAASCEPLASVLRAKPDFKELTVSNNDINE---AGVRVLCQGLKDSPCQLE-ALKLESCGVTSDNCRDLCGIVASK 225 (460)
T ss_dssp TSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHH---HHHHHHHHHHHHSCCCCC-EEECTTSCCBTTHHHHHHHHHHHC
T ss_pred ccccchhhhccccccccccccccccccccccccc---cccccccccccccccccc-ccccccccccchhhhccccccccc
Confidence 11111000 001111122222211110000 00000000011100 111 233333222222222233344556
Q ss_pred CCCCeEEEEEecccccccCCcccccccchhhHHHHhhcCCCCCCCcEEEEeccCCCccc--CCchhhcccccccEEEEeC
Q 037953 283 KNLVRLILRFKDIDKAVKRWPEAISNENAAKHEAICEALWPPPNLESLEIAGFRGRKMM--LSTNWMASLNMLKKLRLLN 360 (625)
Q Consensus 283 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~--~~p~~l~~l~~L~~L~L~~ 360 (625)
..++.+.+..+... . ................++.+++++|...... ....++...+.++.+++++
T Consensus 226 ~~~~~l~~~~n~~~-------~------~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~ 292 (460)
T d1z7xw1 226 ASLRELALGSNKLG-------D------VGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAG 292 (460)
T ss_dssp TTCCEEECCSSBCH-------H------HHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTT
T ss_pred ccccccchhhcccc-------c------cccchhhccccccccccccccccccccccccccccccccccccccccccccc
Confidence 67777777765311 0 0011233344555678888888877654320 0022344667888888877
Q ss_pred CCCCC----CCC-C-CCCCCCcceeeccccccceeeCccCCCCCCCCCCCCCCCCCCCCCCCCCCeeeccCcccccccc-
Q 037953 361 CPTCE----IMP-P-LGQLPSLEILLIKDMTSVERVGDESLGIANGDHGAPSSSSVNNIAFPKLKELEFSGLQEWEDWD- 433 (625)
Q Consensus 361 c~~l~----~l~-~-l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~- 433 (625)
|.... .+. . ....+.|+.+++++|. +.......+... ....++|++|+|+++. +..-.
T Consensus 293 n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~~-l~~~~~~~l~~~-------------~~~~~~L~~L~Ls~N~-i~~~g~ 357 (460)
T d1z7xw1 293 NELGDEGARLLCETLLEPGCQLESLWVKSCS-FTAACCSHFSSV-------------LAQNRFLLELQISNNR-LEDAGV 357 (460)
T ss_dssp CCCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CBGGGHHHHHHH-------------HHHCSSCCEEECCSSB-CHHHHH
T ss_pred ccccccccchhhccccccccccccccccccc-hhhhhhhhcccc-------------cccccchhhhheeeec-ccCccc
Confidence 54211 010 0 1234578888888765 322111000000 2345678888888753 32110
Q ss_pred --cCCCCcccCCCccEEEEecCCCCCc-----CCcCCCCCCCCCEEEEecCc
Q 037953 434 --FRKEDITIMPQINSLSIYGCHKLKS-----LPDQLLQSSTLKTLRINRCR 478 (625)
Q Consensus 434 --~~~~~~~~l~~L~~L~l~~c~~l~~-----lp~~~~~l~~L~~L~l~~c~ 478 (625)
+...-....+.|++|++++| .++. ++..+...++|++|+|++|+
T Consensus 358 ~~l~~~l~~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~ 408 (460)
T d1z7xw1 358 RELCQGLGQPGSVLRVLWLADC-DVSDSSCSSLAATLLANHSLRELDLSNNC 408 (460)
T ss_dssp HHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCCCCCEEECCSSS
T ss_pred chhhhhhhcccCCCCEEECCCC-CCChHHHHHHHHHHhcCCCCCEEECCCCc
Confidence 00000013467888888887 4543 34444556788888888874
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.97 E-value=1.7e-10 Score=105.32 Aligned_cols=124 Identities=21% Similarity=0.116 Sum_probs=98.1
Q ss_pred CCCceEEEEEEcCCCCc-c-hhhhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhh
Q 037953 70 CPEKLRHLMLVLGYEAP-S-LVSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEI 147 (625)
Q Consensus 70 ~~~~lr~L~l~~~~~~~-~-~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~l 147 (625)
.+.++++|++++|.+.. + +..|.++++|+.|++++|. +....+ ..|..+++|++|+|+ +|++..+
T Consensus 27 lp~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~--i~~~~~---~~~~~~~~L~~L~Ls--------~N~l~~l 93 (192)
T d1w8aa_ 27 IPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQ--LTGIEP---NAFEGASHIQELQLG--------ENKIKEI 93 (192)
T ss_dssp CCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSC--CCCBCT---TTTTTCTTCCEEECC--------SCCCCEE
T ss_pred CCCCCCEEEeCCCCCcccccccccCCCceEeeeeccccc--cccccc---cccccccccceeeec--------ccccccc
Confidence 46789999999999954 4 3567899999999999965 556666 889999999999999 9999988
Q ss_pred hc-ccccccccceecC-CC-CCCCchh-hcCCCCCceEeecCCCCCCccccccccccccceEEe
Q 037953 148 LN-GVEKLIHLRYLKL-NL-VGDLPEK-CCELLNLQTLELENSSHFKRFPQGIGKLINLRHLIF 207 (625)
Q Consensus 148 p~-~~~~L~~L~~L~L-~~-l~~lP~~-i~~L~~L~~L~L~~~~~l~~lp~~l~~L~~L~~L~l 207 (625)
|. .|.++++|++|+| ++ +..+|.. +..+++|++|+|++|. +...+....-...++.+.+
T Consensus 94 ~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~-~~~~~~~~~~~~~l~~~~l 156 (192)
T d1w8aa_ 94 SNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNP-FNCNCHLAWFAEWLRKKSL 156 (192)
T ss_dssp CSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCC-BCCSGGGHHHHHHHHHHCC
T ss_pred CHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccc-cccccchHHHhhhhhhhcc
Confidence 64 5899999999999 55 9888754 7899999999999998 5543332222233455555
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=98.86 E-value=4.4e-11 Score=109.61 Aligned_cols=125 Identities=18% Similarity=0.210 Sum_probs=99.4
Q ss_pred CCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhhhcccccccccceecC-CC-CCCCchh
Q 037953 94 AIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEILNGVEKLIHLRYLKL-NL-VGDLPEK 171 (625)
Q Consensus 94 l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp~~~~~L~~L~~L~L-~~-l~~lP~~ 171 (625)
...++.+++.+.. .....+| ..++.+++|++|+|+ +|.+..++ .+..+++|++|+| ++ +..+|..
T Consensus 22 ~~~~~~~~l~~~~-~~i~~l~---~sl~~L~~L~~L~Ls--------~n~I~~i~-~l~~l~~L~~L~Ls~N~i~~i~~~ 88 (198)
T d1m9la_ 22 ATEAEKVELHGMI-PPIEKMD---ATLSTLKACKHLALS--------TNNIEKIS-SLSGMENLRILSLGRNLIKKIENL 88 (198)
T ss_dssp CTTCSCEECCBCC-TTCCCCH---HHHHHTTTCCEEECS--------EEEESCCC-CHHHHTTCCEEECCEEEECSCSSH
T ss_pred ccccceeeeeccc-Cchhhhh---hHHhcccccceeECc--------ccCCCCcc-cccCCccccChhhccccccccccc
Confidence 3446667777642 2245566 889999999999999 99988886 6899999999999 44 8889876
Q ss_pred hcCCCCCceEeecCCCCCCccccccccccccceEEecCcccccccc--cCCCccccccCCceEe
Q 037953 172 CCELLNLQTLELENSSHFKRFPQGIGKLINLRHLIFTEDLLEYMPK--GIEKLTSLRTLSEFVV 233 (625)
Q Consensus 172 i~~L~~L~~L~L~~~~~l~~lp~~l~~L~~L~~L~l~~~~l~~lp~--~i~~L~~L~~L~~~~~ 233 (625)
...+.+|++|++++|. ++.++ .+.++++|++|++++|.++.++. .++.+++|+.|++.++
T Consensus 89 ~~~~~~L~~L~l~~N~-i~~l~-~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N 150 (198)
T d1m9la_ 89 DAVADTLEELWISYNQ-IASLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGN 150 (198)
T ss_dssp HHHHHHCCEEECSEEE-CCCHH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSS
T ss_pred cccccccccccccccc-ccccc-cccccccccccccccchhccccccccccCCCccceeecCCC
Confidence 6777789999999998 88875 58899999999999888887763 4677777777776544
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.83 E-value=2e-11 Score=127.30 Aligned_cols=372 Identities=16% Similarity=0.116 Sum_probs=194.8
Q ss_pred CcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhhhcccccccccceecC-CC-CCC-----
Q 037953 95 IKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEILNGVEKLIHLRYLKL-NL-VGD----- 167 (625)
Q Consensus 95 ~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp~~~~~L~~L~~L~L-~~-l~~----- 167 (625)
.+|++|++++++... ..+. +.++.++++++|+|++|.-. ...+..++..+..+++|++||| ++ ++.
T Consensus 2 ~~l~~ld~~~~~i~~-~~~~---~l~~~l~~l~~L~L~~~~i~---~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~ 74 (460)
T d1z7xw1 2 LDIQSLDIQCEELSD-ARWA---ELLPLLQQCQVVRLDDCGLT---EARCKDISSALRVNPALAELNLRSNELGDVGVHC 74 (460)
T ss_dssp EEEEEEEEESCCCCH-HHHH---HHHHHHTTCSEEEEESSCCC---HHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHH
T ss_pred CCCCEEEeeCCcCCh-HHHH---HHHHhCCCCCEEEeCCCCCC---HHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHH
Confidence 479999999976322 2223 67889999999999955311 1123466777889999999999 44 642
Q ss_pred Cchhhc-CCCCCceEeecCCCCCCc-----cccccccccccceEEecCccccccccc-C-CCccccccCCceE-ecCCCC
Q 037953 168 LPEKCC-ELLNLQTLELENSSHFKR-----FPQGIGKLINLRHLIFTEDLLEYMPKG-I-EKLTSLRTLSEFV-VASGGG 238 (625)
Q Consensus 168 lP~~i~-~L~~L~~L~L~~~~~l~~-----lp~~l~~L~~L~~L~l~~~~l~~lp~~-i-~~L~~L~~L~~~~-~~~~~~ 238 (625)
+...+. ...+|++|+|++|. ++. ++..+..+++|++|++++|.++..+.. + ..+.......... ......
T Consensus 75 l~~~l~~~~~~L~~L~L~~n~-it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 153 (460)
T d1z7xw1 75 VLQGLQTPSCKIQKLSLQNCC-LTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSL 153 (460)
T ss_dssp HHHTTCSTTCCCCEEECTTSC-CBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCC
T ss_pred HHHHHhcCCCCCCEEECCCCC-ccccccccccchhhccccccccccccccchhhhhhhhhhccccccccccccccccccc
Confidence 222222 23579999999998 764 455678899999999988876542210 0 0011111111111 111100
Q ss_pred cCCCcccChhccccccccccceEEeccCCCCChhHHHHhcc-CCCCCCCeEEEEEecccccccCCcccccccchhhHHHH
Q 037953 239 RYGSEACKLEGLRHLNHLRGSLKVRGLGNVADVDEVKNAHL-EKKKNLVRLILRFKDIDKAVKRWPEAISNENAAKHEAI 317 (625)
Q Consensus 239 ~~~~~~~~l~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (625)
...........+.....++ .+.+..+.............+ ........+.+..+... .......
T Consensus 154 ~~~~~~~~~~~l~~~~~~~-~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~--------------~~~~~~~ 218 (460)
T d1z7xw1 154 SAASCEPLASVLRAKPDFK-ELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVT--------------SDNCRDL 218 (460)
T ss_dssp BGGGHHHHHHHHHHCTTCC-EEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCB--------------TTHHHHH
T ss_pred chhhhcccccccccccccc-ccccccccccccccccccccccccccccccccccccccc--------------chhhhcc
Confidence 0000001111222333333 344433221110001111111 12223444544433210 0012334
Q ss_pred hhcCCCCCCCcEEEEeccCCCccc---CCchhhcccccccEEEEeCCCCCCCC-----CCCCCCCCcceeecccccccee
Q 037953 318 CEALWPPPNLESLEIAGFRGRKMM---LSTNWMASLNMLKKLRLLNCPTCEIM-----PPLGQLPSLEILLIKDMTSVER 389 (625)
Q Consensus 318 ~~~l~~~~~L~~L~L~~~~~~~~~---~~p~~l~~l~~L~~L~L~~c~~l~~l-----~~l~~l~~L~~L~L~~~~~l~~ 389 (625)
...+...+.++.+.+.++...... ..+........++.+++++|...... ..+...+.++.++++++. ++.
T Consensus 219 ~~~l~~~~~~~~l~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~-i~~ 297 (460)
T d1z7xw1 219 CGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNE-LGD 297 (460)
T ss_dssp HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCC-CHH
T ss_pred cccccccccccccchhhccccccccchhhccccccccccccccccccccccccccccccccccccccccccccccc-ccc
Confidence 444555678889988877543210 00222335678999999987533211 123457788899998865 321
Q ss_pred eCccCCCCCCCCCCCCCCCCCCCCCCCCCCeeeccCcccccccccC--CCCcccCCCccEEEEecCCCCCc-----CCcC
Q 037953 390 VGDESLGIANGDHGAPSSSSVNNIAFPKLKELEFSGLQEWEDWDFR--KEDITIMPQINSLSIYGCHKLKS-----LPDQ 462 (625)
Q Consensus 390 l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~--~~~~~~l~~L~~L~l~~c~~l~~-----lp~~ 462 (625)
.....+... .....+.|+.+.++++. +...... .......++|++|++++| .++. ++..
T Consensus 298 ~~~~~l~~~------------l~~~~~~L~~l~l~~~~-l~~~~~~~l~~~~~~~~~L~~L~Ls~N-~i~~~g~~~l~~~ 363 (460)
T d1z7xw1 298 EGARLLCET------------LLEPGCQLESLWVKSCS-FTAACCSHFSSVLAQNRFLLELQISNN-RLEDAGVRELCQG 363 (460)
T ss_dssp HHHHHHHHH------------HTSTTCCCCEEECTTSC-CBGGGHHHHHHHHHHCSSCCEEECCSS-BCHHHHHHHHHHH
T ss_pred cccchhhcc------------ccccccccccccccccc-hhhhhhhhcccccccccchhhhheeee-cccCcccchhhhh
Confidence 110000000 02234679999998774 2211100 000124678999999996 4542 4443
Q ss_pred CC-CCCCCCEEEEecCcchhhccc----ccccccCCCCceEEecCCCC
Q 037953 463 LL-QSSTLKTLRINRCRVLEEHFK----KDRSKISHIPDIQIYERGPG 505 (625)
Q Consensus 463 ~~-~l~~L~~L~l~~c~~L~~~~~----~~~~~l~~l~~l~~~~~~~~ 505 (625)
+. ..+.|++|++++|. +++... +.+...+++..+.+..+..+
T Consensus 364 l~~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~ 410 (460)
T d1z7xw1 364 LGQPGSVLRVLWLADCD-VSDSSCSSLAATLLANHSLRELDLSNNCLG 410 (460)
T ss_dssp HTSTTCCCCEEECTTSC-CCHHHHHHHHHHHHHCCCCCEEECCSSSCC
T ss_pred hhcccCCCCEEECCCCC-CChHHHHHHHHHHhcCCCCCEEECCCCcCC
Confidence 33 35789999999995 443211 33445567777777766543
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.68 E-value=1.1e-08 Score=89.32 Aligned_cols=99 Identities=22% Similarity=0.104 Sum_probs=54.6
Q ss_pred EEEEcCCCCcchhhhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhhh-ccccccc
Q 037953 77 LMLVLGYEAPSLVSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEIL-NGVEKLI 155 (625)
Q Consensus 77 L~l~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp-~~~~~L~ 155 (625)
+...++.....|..+..+++|+.|++.++. .+....+ +.|.++++|+.|+|+ +|.+..++ .+|..++
T Consensus 13 l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~-~l~~i~~---~~f~~l~~L~~L~Ls--------~N~l~~i~~~~f~~l~ 80 (156)
T d2ifga3 13 LRCTRDGALDSLHHLPGAENLTELYIENQQ-HLQHLEL---RDLRGLGELRNLTIV--------KSGLRFVAPDAFHFTP 80 (156)
T ss_dssp EECCSSCCCTTTTTSCSCSCCSEEECCSCS-SCCEECG---GGSCSCCCCSEEECC--------SSCCCEECTTGGGSCS
T ss_pred EEecCCCCccCcccccCccccCeeecCCCc-cccccCc---hhhccccccCcceee--------ccccCCcccccccccc
Confidence 444455555556666666666666665532 2233333 456666666666666 66666553 3355555
Q ss_pred ccceecC-CC-CCCCchhhcCCCCCceEeecCCC
Q 037953 156 HLRYLKL-NL-VGDLPEKCCELLNLQTLELENSS 187 (625)
Q Consensus 156 ~L~~L~L-~~-l~~lP~~i~~L~~L~~L~L~~~~ 187 (625)
+|++|+| .+ ++.+|..+....+|++|+|++|.
T Consensus 81 ~L~~L~Ls~N~l~~l~~~~~~~~~l~~L~L~~Np 114 (156)
T d2ifga3 81 RLSRLNLSFNALESLSWKTVQGLSLQELVLSGNP 114 (156)
T ss_dssp CCCEEECCSSCCSCCCSTTTCSCCCCEEECCSSC
T ss_pred cccceeccCCCCcccChhhhccccccccccCCCc
Confidence 5555555 32 55555554444455555555554
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.63 E-value=1.8e-08 Score=87.92 Aligned_cols=103 Identities=16% Similarity=0.066 Sum_probs=60.9
Q ss_pred CcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccc-hhhhh-cccccccccceecC-CC-CCCCc-
Q 037953 95 IKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQ-TNEIL-NGVEKLIHLRYLKL-NL-VGDLP- 169 (625)
Q Consensus 95 ~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~-l~~lp-~~~~~L~~L~~L~L-~~-l~~lP- 169 (625)
....+++++++. ....| ..+..+++|+.|+++ ++. ++.++ .+|.++++|+.|+| ++ +..++
T Consensus 8 ~~~~~l~c~~~~---~~~~p---~~l~~l~~l~~L~l~--------~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~ 73 (156)
T d2ifga3 8 HGSSGLRCTRDG---ALDSL---HHLPGAENLTELYIE--------NQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAP 73 (156)
T ss_dssp SSSSCEECCSSC---CCTTT---TTSCSCSCCSEEECC--------SCSSCCEECGGGSCSCCCCSEEECCSSCCCEECT
T ss_pred CCCCeEEecCCC---CccCc---ccccCccccCeeecC--------CCccccccCchhhccccccCcceeeccccCCccc
Confidence 334455555533 22233 446666777777776 443 66664 34666777777777 33 66663
Q ss_pred hhhcCCCCCceEeecCCCCCCccccccccccccceEEecCccc
Q 037953 170 EKCCELLNLQTLELENSSHFKRFPQGIGKLINLRHLIFTEDLL 212 (625)
Q Consensus 170 ~~i~~L~~L~~L~L~~~~~l~~lp~~l~~L~~L~~L~l~~~~l 212 (625)
..+..+++|++|+|++|. ++.+|.++....+|++|++++|.+
T Consensus 74 ~~f~~l~~L~~L~Ls~N~-l~~l~~~~~~~~~l~~L~L~~Np~ 115 (156)
T d2ifga3 74 DAFHFTPRLSRLNLSFNA-LESLSWKTVQGLSLQELVLSGNPL 115 (156)
T ss_dssp TGGGSCSCCCEEECCSSC-CSCCCSTTTCSCCCCEEECCSSCC
T ss_pred ccccccccccceeccCCC-CcccChhhhccccccccccCCCcc
Confidence 346666777777777776 666666654445666666655544
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=98.56 E-value=7e-09 Score=103.57 Aligned_cols=95 Identities=20% Similarity=0.125 Sum_probs=57.6
Q ss_pred HhccCCCCCCCeEEEEEecccccccCCcccccccchhhHHHHhhcCCCCCCCcEEEEeccCCCccc--CCchhhc--ccc
Q 037953 276 NAHLEKKKNLVRLILRFKDIDKAVKRWPEAISNENAAKHEAICEALWPPPNLESLEIAGFRGRKMM--LSTNWMA--SLN 351 (625)
Q Consensus 276 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~--~~p~~l~--~l~ 351 (625)
...+..+++|+.|++++|.++ ......+...+..+++|++|++++|...... .+-..+. ..+
T Consensus 208 ~~~l~~~~~L~~L~Ls~N~i~--------------~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~ 273 (344)
T d2ca6a1 208 LEGLAYCQELKVLDLQDNTFT--------------HLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENI 273 (344)
T ss_dssp HTTGGGCTTCCEEECCSSCCH--------------HHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSC
T ss_pred hhhhcchhhhccccccccccc--------------ccccccccccccccccchhhhhhcCccCchhhHHHHHHhhhccCC
Confidence 345667788888888877532 0012345566777888999998888754310 0011122 235
Q ss_pred cccEEEEeCCCCCCC-----CC-CC-CCCCCcceeeccccc
Q 037953 352 MLKKLRLLNCPTCEI-----MP-PL-GQLPSLEILLIKDMT 385 (625)
Q Consensus 352 ~L~~L~L~~c~~l~~-----l~-~l-~~l~~L~~L~L~~~~ 385 (625)
.|++|++++|. ++. +. .+ .++++|+.|+|++|.
T Consensus 274 ~L~~L~ls~N~-i~~~~~~~l~~~l~~~~~~L~~L~l~~N~ 313 (344)
T d2ca6a1 274 GLQTLRLQYNE-IELDAVRTLKTVIDEKMPDLLFLELNGNR 313 (344)
T ss_dssp CCCEEECCSSC-CBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred CCCEEECCCCc-CChHHHHHHHHHHHccCCCCCEEECCCCc
Confidence 78889998864 332 11 12 246788899998865
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=98.52 E-value=1.2e-08 Score=101.89 Aligned_cols=257 Identities=16% Similarity=0.079 Sum_probs=138.1
Q ss_pred cchhhhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCcccccc---chhhhhcccccccccceecC
Q 037953 86 PSLVSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEED---QTNEILNGVEKLIHLRYLKL 162 (625)
Q Consensus 86 ~~~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~---~l~~lp~~~~~L~~L~~L~L 162 (625)
.+...+.+...|+.|+|++|... ......+...+...++|+.|+++++........ .+..+...+...++|+.|+|
T Consensus 22 ~l~~~L~~~~~l~~L~Ls~n~i~-~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L 100 (344)
T d2ca6a1 22 SVFAVLLEDDSVKEIVLSGNTIG-TEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRL 100 (344)
T ss_dssp TTSHHHHHCSCCCEEECTTSEEC-HHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEEC
T ss_pred HHHHHHhhCCCCCEEECcCCcCC-HHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccc
Confidence 44456667778888888876411 111111114456678888888874431100000 02233445666777888888
Q ss_pred --CCCCC-----CchhhcCCCCCceEeecCCCCCCcc-----ccc---------cccccccceEEecCccccc-----cc
Q 037953 163 --NLVGD-----LPEKCCELLNLQTLELENSSHFKRF-----PQG---------IGKLINLRHLIFTEDLLEY-----MP 216 (625)
Q Consensus 163 --~~l~~-----lP~~i~~L~~L~~L~L~~~~~l~~l-----p~~---------l~~L~~L~~L~l~~~~l~~-----lp 216 (625)
|.++. +...+...++|++|++++|. ++.- ... ....+.|+.|+++.+.++. +.
T Consensus 101 ~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~-l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~ 179 (344)
T d2ca6a1 101 SDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNG-LGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWA 179 (344)
T ss_dssp CSCCCCTTTHHHHHHHHHHCTTCCEEECCSSC-CHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHH
T ss_pred cccccccccccchhhhhcccccchheeccccc-ccccccccccccccccccccccccCcccceeeccccccccccccccc
Confidence 33433 33445567788888888876 4321 000 1234567788876665432 22
Q ss_pred ccCCCccccccCCceEecCCCCcCCCccc-ChhccccccccccceEEeccCCCCC-hhHHHHhccCCCCCCCeEEEEEec
Q 037953 217 KGIEKLTSLRTLSEFVVASGGGRYGSEAC-KLEGLRHLNHLRGSLKVRGLGNVAD-VDEVKNAHLEKKKNLVRLILRFKD 294 (625)
Q Consensus 217 ~~i~~L~~L~~L~~~~~~~~~~~~~~~~~-~l~~l~~L~~L~~~L~l~~~~~~~~-~~~~~~~~l~~l~~L~~L~l~~~~ 294 (625)
..+...+.|+.|++..+..... .... ....+...++|+ .|++++.. +.. -...+...+..+++|++|++++|.
T Consensus 180 ~~l~~~~~L~~L~L~~n~i~~~---g~~~~l~~~l~~~~~L~-~L~Ls~N~-i~~~g~~~L~~~l~~~~~L~~L~Ls~n~ 254 (344)
T d2ca6a1 180 KTFQSHRLLHTVKMVQNGIRPE---GIEHLLLEGLAYCQELK-VLDLQDNT-FTHLGSSALAIALKSWPNLRELGLNDCL 254 (344)
T ss_dssp HHHHHCTTCCEEECCSSCCCHH---HHHHHHHTTGGGCTTCC-EEECCSSC-CHHHHHHHHHHHGGGCTTCCEEECTTCC
T ss_pred chhhhhhhhccccccccccccc---ccccchhhhhcchhhhc-cccccccc-ccccccccccccccccccchhhhhhcCc
Confidence 2234455666666544432220 0000 112245566666 67776532 111 112344567788999999999885
Q ss_pred ccccccCCcccccccchhhHHHHhhcCC--CCCCCcEEEEeccCCCccc--CCchhhc-ccccccEEEEeCCCC
Q 037953 295 IDKAVKRWPEAISNENAAKHEAICEALW--PPPNLESLEIAGFRGRKMM--LSTNWMA-SLNMLKKLRLLNCPT 363 (625)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~L~~L~L~~~~~~~~~--~~p~~l~-~l~~L~~L~L~~c~~ 363 (625)
++. .....+...+. ..+.|++|++++|...... .+...+. ++++|++|++++|..
T Consensus 255 i~~--------------~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~ 314 (344)
T d2ca6a1 255 LSA--------------RGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF 314 (344)
T ss_dssp CCH--------------HHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBS
T ss_pred cCc--------------hhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcC
Confidence 320 01233444443 3467999999998754310 0022332 578899999998653
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.47 E-value=9.8e-06 Score=70.44 Aligned_cols=61 Identities=25% Similarity=0.193 Sum_probs=27.7
Q ss_pred ccccccceecC-CC-CCCC---chhhcCCCCCceEeecCCCCCCccccc-cccccccceEEecCcccc
Q 037953 152 EKLIHLRYLKL-NL-VGDL---PEKCCELLNLQTLELENSSHFKRFPQG-IGKLINLRHLIFTEDLLE 213 (625)
Q Consensus 152 ~~L~~L~~L~L-~~-l~~l---P~~i~~L~~L~~L~L~~~~~l~~lp~~-l~~L~~L~~L~l~~~~l~ 213 (625)
..+++|++|+| ++ +..+ +..+..+++|++|+|++|. ++++++. ..+..+|+.|++.+|.+.
T Consensus 62 ~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~-i~~l~~l~~l~~~~L~~L~L~~Npl~ 128 (162)
T d1koha1 62 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNE-LKSERELDKIKGLKLEELWLDGNSLS 128 (162)
T ss_dssp HHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSC-CCCGGGHHHHTTCCCSSCCCTTSTTS
T ss_pred HhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCc-cccchhhhhhhccccceeecCCCCcC
Confidence 34445555555 22 3333 2234455555555555555 5554431 122234555555444443
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.41 E-value=2.5e-05 Score=67.74 Aligned_cols=81 Identities=20% Similarity=0.130 Sum_probs=60.0
Q ss_pred HHHhcCCceeEEEeecCCCccccccchhhh---hcccccccccceecC-CC-CCCCch-hhcCCCCCceEeecCCCCCCc
Q 037953 118 GIFDQLTCLRALRIEGTDNWELEEDQTNEI---LNGVEKLIHLRYLKL-NL-VGDLPE-KCCELLNLQTLELENSSHFKR 191 (625)
Q Consensus 118 ~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~l---p~~~~~L~~L~~L~L-~~-l~~lP~-~i~~L~~L~~L~L~~~~~l~~ 191 (625)
..+..+++|++|+|+ +|.+..+ +..+..+++|++|+| ++ +.++++ ...+..+|+.|++++|. +..
T Consensus 59 ~~~~~~~~L~~L~Ls--------~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Np-l~~ 129 (162)
T d1koha1 59 IIEENIPELLSLNLS--------NNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNS-LSD 129 (162)
T ss_dssp HHHHHCTTCCCCCCC--------SSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTST-TSS
T ss_pred HHHHhCCCCCEeeCC--------CccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCC-cCc
Confidence 666789999999999 8887655 455778999999999 44 888875 23345579999999998 654
Q ss_pred ccc--------ccccccccceEEe
Q 037953 192 FPQ--------GIGKLINLRHLIF 207 (625)
Q Consensus 192 lp~--------~l~~L~~L~~L~l 207 (625)
... .+..+++|+.||-
T Consensus 130 ~~~~~~~y~~~i~~~~P~L~~LDg 153 (162)
T d1koha1 130 TFRDQSTYISAIRERFPKLLRLDG 153 (162)
T ss_dssp SSSSHHHHHHHHHTTSTTCCEETT
T ss_pred CcccchhHHHHHHHHCCCCCEECc
Confidence 322 1456777877763
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=96.73 E-value=0.00034 Score=60.63 Aligned_cols=17 Identities=6% Similarity=0.079 Sum_probs=9.3
Q ss_pred hhcCCCCCceEeecCCC
Q 037953 171 KCCELLNLQTLELENSS 187 (625)
Q Consensus 171 ~i~~L~~L~~L~L~~~~ 187 (625)
.+..-++|++|++++|.
T Consensus 95 aL~~n~sL~~L~l~~n~ 111 (167)
T d1pgva_ 95 STLVTQSIVEFKADNQR 111 (167)
T ss_dssp HTTTTCCCSEEECCCCS
T ss_pred HHHhCCcCCEEECCCCc
Confidence 34445556666666554
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=96.09 E-value=0.0021 Score=55.33 Aligned_cols=42 Identities=10% Similarity=-0.004 Sum_probs=28.0
Q ss_pred hhhcCCCCCceEeecCCCCCCc-----cccccccccccceEEecCccc
Q 037953 170 EKCCELLNLQTLELENSSHFKR-----FPQGIGKLINLRHLIFTEDLL 212 (625)
Q Consensus 170 ~~i~~L~~L~~L~L~~~~~l~~-----lp~~l~~L~~L~~L~l~~~~l 212 (625)
+.+...+.|++|+|++|. ++. +-..+..-+.|++|++.++..
T Consensus 66 ~~L~~n~~L~~L~L~~n~-i~~~g~~~l~~aL~~n~sL~~L~l~~n~~ 112 (167)
T d1pgva_ 66 ELIETSPSLRVLNVESNF-LTPELLARLLRSTLVTQSIVEFKADNQRQ 112 (167)
T ss_dssp HHHHHCSSCCEEECCSSB-CCHHHHHHHHHHTTTTCCCSEEECCCCSS
T ss_pred hhhhhcccccceeeehhh-cchHHHHHHHHHHHhCCcCCEEECCCCcC
Confidence 445566778888888887 653 223355667788888866643
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=95.92 E-value=0.0018 Score=55.72 Aligned_cols=112 Identities=16% Similarity=0.130 Sum_probs=50.2
Q ss_pred ccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccc-hhhhhcccccccccceecC--CCC---
Q 037953 92 FNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQ-TNEILNGVEKLIHLRYLKL--NLV--- 165 (625)
Q Consensus 92 ~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~-l~~lp~~~~~L~~L~~L~L--~~l--- 165 (625)
.+.+.|+.|+++++.......+..+-.++...++|+.|+|++|.- +.. ...+-..+...+.++.+++ |.+
T Consensus 14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l----~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~ 89 (166)
T d1io0a_ 14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRS----NDPVAFALAEMLKVNNTLKSLNVESNFISGS 89 (166)
T ss_dssp TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCC----CHHHHHHHHHHHHHCSSCCEEECCSSCCCHH
T ss_pred hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcc----cHHHHHHHHHHHhhcccchhhhhccccccch
Confidence 345666666666532111111111113445566666666662211 000 1223334445555666666 222
Q ss_pred --CCCchhhcCCCCCceEeec--CCCCCCc-----cccccccccccceEEec
Q 037953 166 --GDLPEKCCELLNLQTLELE--NSSHFKR-----FPQGIGKLINLRHLIFT 208 (625)
Q Consensus 166 --~~lP~~i~~L~~L~~L~L~--~~~~l~~-----lp~~l~~L~~L~~L~l~ 208 (625)
..+-..+...++|+.++|+ +|. ++. +...+.+.++|++|++.
T Consensus 90 g~~~l~~~l~~~~~L~~l~L~l~~n~-i~~~~~~~La~~L~~n~~L~~L~l~ 140 (166)
T d1io0a_ 90 GILALVEALQSNTSLIELRIDNQSQP-LGNNVEMEIANMLEKNTTLLKFGYH 140 (166)
T ss_dssp HHHHHHHGGGGCSSCCEEECCCCSSC-CCHHHHHHHHHHHHHCSSCCEEECC
T ss_pred hHHHHHHHHHhCccccEEeeccCCCc-CcHHHHHHHHHHHHhCCCcCEEeCc
Confidence 1222345555666654443 333 322 33334556666666663
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=95.65 E-value=0.0035 Score=53.81 Aligned_cols=113 Identities=10% Similarity=0.041 Sum_probs=76.7
Q ss_pred CCceEEEEEEcC-CC-----CcchhhhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccch
Q 037953 71 PEKLRHLMLVLG-YE-----APSLVSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQT 144 (625)
Q Consensus 71 ~~~lr~L~l~~~-~~-----~~~~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l 144 (625)
.+++++|++.+. .+ ..+...+...++|++|++++|.... .....+...+...+.++.+++++|... .-.+
T Consensus 16 ~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~-~~~~~L~~~l~~~~~l~~l~l~~~~~~---~~g~ 91 (166)
T d1io0a_ 16 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSND-PVAFALAEMLKVNNTLKSLNVESNFIS---GSGI 91 (166)
T ss_dssp CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCH-HHHHHHHHHHHHCSSCCEEECCSSCCC---HHHH
T ss_pred CCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccH-HHHHHHHHHHhhcccchhhhhcccccc---chhH
Confidence 468889999763 34 2234566788999999999986221 222223367788999999999944321 0113
Q ss_pred hhhhcccccccccceecC--CC--CCC-----CchhhcCCCCCceEeecCCC
Q 037953 145 NEILNGVEKLIHLRYLKL--NL--VGD-----LPEKCCELLNLQTLELENSS 187 (625)
Q Consensus 145 ~~lp~~~~~L~~L~~L~L--~~--l~~-----lP~~i~~L~~L~~L~L~~~~ 187 (625)
..+...+...++|+.++| +. ++. +.+.+.+.++|+.|+++.+.
T Consensus 92 ~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~ 143 (166)
T d1io0a_ 92 LALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 143 (166)
T ss_dssp HHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred HHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCC
Confidence 445677888899998777 22 432 45567789999999998775
|