Citrus Sinensis ID: 037955

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730---
RRLPRTAAAPNQMWTLIRRTAPFVRCKSCYSDHSTTRHFYTRTSNGVPTGLYGFDHLKSPNGFQRFVDDAIERSSELVNYISEMPSSVEIIRAMDEISDAVCSVVDSAELCRQTHPDREFVEEASKASMRISEYLHYLNTNHTLYDAVKKAELDGHLLSKEAHRAANHLRIDFEKGGIHLCADKLDRVNQLNMDIFQLCREFNQNIINDPGHVDIFPESRIPKHIHHLLKPICRLTSGPSRESLISWDNKKEKGFRITTDSRILQSILQWTSDDEVRKMVYIQGHSVPQANHEVLHELIAARNELAQIMGYRSYAEFIVMPNMASSPEVVKSFLLEMSKMIKPKADEEFEAIKNFKRKSCGQKYVHLEPWDEAYYTAMMKSSAYNLDACVVASYFPLGQCIEGLKMLAESLFGVTFHSVPLAPGESWHPDVLKLSLQHPEEGEMGYLYLDLYSRAGKYTGCANFAIKGGRRLSETEYQLPVVALICNFPGSHNLSVRLNHHEVETLFHEFGHALHSLLSRTDYQHFSGTRVALDFAETPSNLFEYYAWDYRVLRRFAKHYLTGEIVPEKLVKSMQGARDMFAATELQRQIFYALVDQTLFGERLGQTRDTSSIVADMKRQHTSWNHVEGTHWHIRFSHFINYGAGYYSYLYAKCFAATIWQKLCQEDPLSLTTGTTLRTKILQHGGAKEPADMLNDLVGDGILRYCNGGIVPDITSFSDEVKLMEDKQEQILL
ccccccccccccHHHHHHccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEcccccccccccccHHccccccHHHHHHHHHHccccccEEEEcccccHHHHHcccccHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHcccccccccccHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHcccEEEEEcccccccccccccEEEEEEccccEEEEEEEEcccccccccccccccccccEEcccccEEccEEEEEccccccccccccccccHHHHHHHHHcHHHHHHHcccccccccccccccccccccHHHHHHccccHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccccHHHHHHHHHHccccccccccccccccHHHHHHHcccccccHHHccc
cccccccccccHHHHHHHHcccHHHHHHHHccccccHcccccccccccccccccHHcccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHcHHHccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHccccHHHHHHHHHHHHHcccccEEEEEcccccHHHHHHcccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHcccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHccccHHHccHHHHHHHHHHHHHHHccccHHHHcccccHHHHHHHHHHHHHHHcccEEEEccccccccccccEEEEEEEcccccEEEEEEEEccccccccccccHHHHHHHHEcccccEccEEEEEEEccccccccccEccHHHHHHHHHHHHHHHHHHHcccccHHHccccccccccHHHHHHHHHHHHcHHHHHHHcccccccccccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcHcccccccccHHHHHHHHHHHEEEccccccccccccHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccccHHHHHHHHHccHHHHHHccccccccHHHHHHHccccHHHcEEEcc
rrlprtaaapnqMWTLIrrtapfvrckscysdhsttrhfytrtsngvptglygfdhlkspngfqRFVDDAIERSSELVNYISEMPSSVEIIRAMDEISDAVCSVvdsaelcrqthpdreFVEEASKASMRISEYLHYLNTNHTLYDAVKKAELDGHLLSKEAHRAANHLridfekggihlCADKLDRVNQLNMDIFQLCREFNQniindpghvdifpesripkhiHHLLKpicrltsgpsresliswdnkkekgfrittDSRILQSILQWTSDDEVRKMVYIQGHSVPQANHEVLHELIAARNELAQIMGyrsyaefivmpnmasspEVVKSFLLEMSKMIKPKADEEFEAIKNFkrkscgqkyvhlepwdEAYYTAMMKSsaynldacvvasyfplgqCIEGLKMLAESLFgvtfhsvplapgeswhpdVLKLSlqhpeegemgYLYLDLYSragkytgcanfaikggrrlseteyQLPVVALICnfpgshnlsvrlNHHEVETLFHEFGHALHSLlsrtdyqhfsgtrvaldfaetpsnlfEYYAWDYRVLRRFAKHyltgeivpEKLVKSMQGARDMFAATELQRQIFYALVDQTlfgerlgqtrdtsSIVADMKRqhtswnhvegthwhIRFSHFINYGAGYYSYLYAKCFAATIWQKlcqedplslttgtTLRTKIlqhggakepadMLNDLVGDGilrycnggivpditsfSDEVKLMEDKQEQILL
rrlprtaaapnqmwtlirrtapfvrCKSCysdhsttrhfytRTSNGVPTGLYGFDHLKSPNGFQRFVDDAIERSSELVNYISEMPSSVEIIRAMDEISDAVCSVVDSAELCRQTHPDREFVEEASKASMRISEYLHYLNTNHTLYDAVKKAELDGHLLSKEAHRAANHLRIDFEKGGIHLCADKLDRVNQLNMDIFQLCREFNQNIINDPGHVDIFPESRIPKHIHHLLKPIcrltsgpsresliswdnkkekgfrittdsriLQSILQWTSDDEVRKMVYIQGHSVPQANHEVLHELIAARNELAQIMGYRSYAEFIVMPNMASSPEVVKSFLLEMSKMIKPKADEEFEAIKnfkrkscgqkyvHLEPWDEAYYTAMMKSSAYNLDACVVASYFPLGQCIEGLKMLAESLFGVTFHSVPLAPGESWHPDVLKLSLQHPEEGEMGYLYLDLYSRAGKYTGCANFAIKGGRRLSETEYQLPVVALICNFPGSHNLSVRLNHHEVETLFHEFGHALHSLLSRTDYQHFSGTRVALDFAETPSNLFEYYAWDYRVLRRFAKHYLTGEIVPEKLVKSMQGARDMFAATELQRQIFYALVDQTLFGERLGQTRDTSSIVADMKRQHTSWNHVEGTHWHIRFSHFINYGAGYYSYLYAKCFAATIWQKLCQEDPLSLTTGTTLRTKILqhggakepaDMLNDLVGDGILRYCNGGIVPDITSFSDEVKLMEDKQEQILL
RRLPRTAAAPNQMWTLIRRTAPFVRCKSCYSDHSTTRHFYTRTSNGVPTGLYGFDHLKSPNGFQRFVDDAIERSSELVNYISEMPSSVEIIRAMDEISDAVCSVVDSAELCRQTHPDREFVEEASKASMRISEYLHYLNTNHTLYDAVKKAELDGHLLSKEAHRAANHLRIDFEKGGIHLCADKLDRVNQLNMDIFQLCREFNQNIINDPGHVDIFPESRIPKHIHHLLKPICRLTSGPSRESLISWDNKKEKGFRITTDSRILQSILQWTSDDEVRKMVYIQGHSVPQANHEVLHELIAARNELAQIMGYRSYAEFIVMPNMASSPEVVKSFLLEMSKMIKPKADEEFEAIKNFKRKSCGQKYVHLEPWDEAYYTAMMKSSAYNLDACVVASYFPLGQCIEGLKMLAESLFGVTFHSVPLAPGESWHPDVLKLSLQHPEEGEMGYLYLDLYSRAGKYTGCANFAIKGGRRLSETEYQLPVVALICNFPGSHNLSVRLNHHEVETLFHEFGHALHSLLSRTDYQHFSGTRVALDFAETPSNLFEYYAWDYRVLRRFAKHYLTGEIVPEKLVKSMQGARDMFAATELQRQIFYALVDQTLFGERLGQTRDTSSIVADMKRQHTSWNHVEGTHWHIRFSHFINYGAGYYSYLYAKCFAATIWQKLCQEDPLSLTTGTTLRTKILQHGGAKEPADMLNDLVGDGILRYCNGGIVPDITSFSDEVKLMEDKQEQILL
***********QMWTLIRRTAPFVRCKSCYSDHSTTRHFYTRTSNGVPTGLYGFDHLKSPNGFQRFVDDAIERSSELVNYISEMPSSVEIIRAMDEISDAVCSVVDSAELCRQT*************SMRISEYLHYLNTNHTLYDAVKKAELDGHLLSKEAHRAANHLRIDFEKGGIHLCADKLDRVNQLNMDIFQLCREFNQNIINDPGHVDIFPESRIPKHIHHLLKPICRLTSGP*RESLISWDNKKEKGFRITTDSRILQSILQWTSDDEVRKMVYIQGHSVPQANHEVLHELIAARNELAQIMGYRSYAEFIVMPNMASSPEVVKSFLLEMSKMI******EFEAIKNFKRKSCGQKYVHLEPWDEAYYTAMMKSSAYNLDACVVASYFPLGQCIEGLKMLAESLFGVTFHSVPLAPGESWHPDVLKLSLQHPEEGEMGYLYLDLYSRAGKYTGCANFAIKGGRRLSETEYQLPVVALICNFPGSHNLSVRLNHHEVETLFHEFGHALHSLLSRTDYQHFSGTRVALDFAETPSNLFEYYAWDYRVLRRFAKHYLTGEIVPEKLVKSMQGARDMFAATELQRQIFYALVDQTLFGERLGQTRDTSSIVADMKRQHTSWNHVEGTHWHIRFSHFINYGAGYYSYLYAKCFAATIWQKLCQEDPLSLTTGTTLRTKILQHGGAKEPADMLNDLVGDGILRYCNGGIVPDITSFS***************
**********************F*****************TRTSNGVPTGLYGFDHLKSPNGFQRFVDDAIERSSELVNYISEMPSSVEIIRAMDEISDAVCSVVDSAELCRQTHPDREFVEEASKASMRISEYLHYLNTNHTLYDAVKKAELDGHLLSKEAHRAANHLRIDFEKGGIHLCADKLDRVNQLNMDIFQLCREFNQNIINDPGHVDIFPESRIPKHIHHLLKPICRLTS*************KEKGFRITTDSRILQSILQWTSDDEVRKMVYIQGHSVPQANHEVLHELIAARNELAQIMGYRSYAEFIVMPNMASSPEVVKSFLLEMSKMIKPKADEEFEAIKNFKRKSCGQKYVHLEPWDEAYYTAMMKSSAYNLDACVVASYFPLGQCIEGLKMLAESLFGVTFHSVPLAPGESWHPDVLKLSLQHPEEGEMGYLYLDLYSRAGKYTGCANFAIKGGRRLSETEYQLPVVALICNFPGSHNLSVRLNHHEVETLFHEFGHALHSLLSRTDYQHFSGTRVALDFAETPSNLFEYYAWDYRVLRRFAKHYLTGEIVPEKLVKSMQGARDMFAATELQRQIFYALVDQTLFGERLGQTRDTSSIVADMKRQHTSWNHVEGTHWHIRFSHFINYGAGYYSYLYAKCFAATIWQKLCQEDPLSLTTGTTLRTKILQHGGAKEPADMLNDLVGDGILRYCNGGIVPDITSFSDEVKLMED****ILL
********APNQMWTLIRRTAPFVRCKSCYSDHSTTRHFYTRTSNGVPTGLYGFDHLKSPNGFQRFVDDAIERSSELVNYISEMPSSVEIIRAMDEISDAVCSVVDSAELCRQTHPDREFVEEASKASMRISEYLHYLNTNHTLYDAVKKAELDGHLLSKEAHRAANHLRIDFEKGGIHLCADKLDRVNQLNMDIFQLCREFNQNIINDPGHVDIFPESRIPKHIHHLLKPICRLTSGPSRESLISWDNKKEKGFRITTDSRILQSILQWTSDDEVRKMVYIQGHSVPQANHEVLHELIAARNELAQIMGYRSYAEFIVMPNMASSPEVVKSFLLEMSKMIKPKADEEFEAIKNFKRKSCGQKYVHLEPWDEAYYTAMMKSSAYNLDACVVASYFPLGQCIEGLKMLAESLFGVTFHSVPLAPGESWHPDVLKLSLQHPEEGEMGYLYLDLYSRAGKYTGCANFAIKGGRRLSETEYQLPVVALICNFPGSHNLSVRLNHHEVETLFHEFGHALHSLLSRTDYQHFSGTRVALDFAETPSNLFEYYAWDYRVLRRFAKHYLTGEIVPEKLVKSMQGARDMFAATELQRQIFYALVDQTLFGERLGQTRDTSSIVADMKRQHTSWNHVEGTHWHIRFSHFINYGAGYYSYLYAKCFAATIWQKLCQEDPLSLTTGTTLRTKILQHGGAKEPADMLNDLVGDGILRYCNGGIVPDITSFSDEVKLMEDKQEQILL
******AAAPNQMWTLIRRTAPFVRCKSCYSDHSTTRHFYTRTSNGVPTGLYGFDHLKSPNGFQRFVDDAIERSSELVNYISEMPSSVEIIRAMDEISDAVCSVVDSAELCRQTHPDREFVEEASKASMRISEYLHYLNTNHTLYDAVKKAELDGHLLSKEAHRAANHLRIDFEKGGIHLCADKLDRVNQLNMDIFQLCREFNQNIINDPGHVDIFPESRIPKHIHHLLKPICRLTSGPSRESLISWDNKKEKGFRITTDSRILQSILQWTSDDEVRKMVYIQGHSVPQANHEVLHELIAARNELAQIMGYRSYAEFIVMPNMASSPEVVKSFLLEMSKMIKPKADEEFEAIKNFKRKSCGQKYVHLEPWDEAYYTAMMKSSAYNLDACVVASYFPLGQCIEGLKMLAESLFGVTFHSVPLAPGESWHPDVLKLSLQHPEEGEMGYLYLDLYSRAGKYTGCANFAIKGGRRLSETEYQLPVVALICNFPGSHNLSVRLNHHEVETLFHEFGHALHSLLSRTDYQHFSGTRVALDFAETPSNLFEYYAWDYRVLRRFAKHYLTGEIVPEKLVKSMQGARDMFAATELQRQIFYALVDQTLFGERLGQTRDTSSIVADMKRQHTSWNHVEGTHWHIRFSHFINYGAGYYSYLYAKCFAATIWQKLCQEDPLSLTTGTTLRTKILQHGGAKEPADMLNDLVGDGILRYCNGGIVPDITSFSDEVKLMEDKQEQILL
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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RRLPRTAAAPNQMWTLIRRTAPFVRCKSCYSDHSTTRHFYTRTSNGVPTGLYGFDHLKSPNGFQRFVDDAIERSSELVNYISEMPSSVEIIRAMDEISDAVCSVVDSAELCRQTHPDREFVEEASKASMRISEYLHYLNTNHTLYDAVKKAELDGHLLSKEAHRAANHLRIDFEKGGIHLCADKLDRVNQLNMDIFQLCREFNQNIINDPGHVDIFPESRIPKHIHHLLKPICRLTSGPSRESLISWDNKKEKGFRITTDSRILQSILQWTSDDEVRKMVYIQGHSVPQANHEVLHELIAARNELAQIMGYRSYAEFIVMPNMASSPEVVKSFLLEMSKMIKPKADEEFEAIKNFKRKSCGQKYVHLEPWDEAYYTAMMKSSAYNLDACVVASYFPLGQCIEGLKMLAESLFGVTFHSVPLAPGESWHPDVLKLSLQHPEEGEMGYLYLDLYSRAGKYTGCANFAIKGGRRLSETEYQLPVVALICNFPGSHNLSVRLNHHEVETLFHEFGHALHSLLSRTDYQHFSGTRVALDFAETPSNLFEYYAWDYRVLRRFAKHYLTGEIVPEKLVKSMQGARDMFAATELQRQIFYALVDQTLFGERLGQTRDTSSIVADMKRQHTSWNHVEGTHWHIRFSHFINYGAGYYSYLYAKCFAATIWQKLCQEDPLSLTTGTTLRTKILQHGGAKEPADMLNDLVGDGILRYCNGGIVPDITSFSDEVKLMEDKQEQILL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query733 2.2.26 [Sep-21-2011]
A6H611711 Mitochondrial intermediat yes no 0.858 0.884 0.341 1e-109
Q99797713 Mitochondrial intermediat yes no 0.844 0.868 0.339 1e-108
Q5RF14713 Mitochondrial intermediat yes no 0.844 0.868 0.339 1e-108
Q01992710 Mitochondrial intermediat yes no 0.851 0.878 0.345 1e-107
Q6CVF7779 Mitochondrial intermediat yes no 0.886 0.834 0.311 3e-91
Q6FW88761 Mitochondrial intermediat yes no 0.859 0.827 0.313 1e-88
A8QB25806 Mitochondrial intermediat N/A no 0.888 0.807 0.306 2e-87
Q753X4776 Mitochondrial intermediat yes no 0.873 0.824 0.305 9e-87
A7TSL2787 Mitochondrial intermediat N/A no 0.856 0.797 0.322 2e-86
P35999772 Mitochondrial intermediat yes no 0.908 0.862 0.305 2e-86
>sp|A6H611|MIPEP_MOUSE Mitochondrial intermediate peptidase OS=Mus musculus GN=Mipep PE=2 SV=1 Back     alignment and function desciption
 Score =  398 bits (1022), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 231/677 (34%), Positives = 352/677 (51%), Gaps = 48/677 (7%)

Query: 50  GLYGFDHLKSPNGFQRFVDDAIERSSELVNYISEMPSSVEIIRAMDEISDAVCSVVDSAE 109
           GL+G   L +P GFQ   ++A++++  LV      P   + +   DE+SD +C V D A+
Sbjct: 62  GLFGVPELSTPEGFQVAQEEALKKTEWLVERACSTPPGPQTVLIFDELSDCLCRVADLAD 121

Query: 110 LCRQTHPDREFVEEASKASMRISEYLHYLNTNHTLYDAVKKAELDGHL---LSKEAHRAA 166
             +  HPD  F E A +A   I   +  LNTN  LY ++++   D  L   L  E  R A
Sbjct: 122 FVKIGHPDPAFREAAQEACRSIGTMVEKLNTNVELYQSLQRLLGDKKLMESLDAETRRVA 181

Query: 167 NHLRIDFEKGGIHLCADKLDRVNQLNMDIFQLCREFNQNIINDPGHVDIFPESRIPKHIH 226
                DFE  GIHL  +K  R   LN+ I  L   F     N P  +    +S +P+HI 
Sbjct: 182 ELFMFDFEISGIHLDEEKRRRAVDLNVKILDLSNAFLMRT-NFPNKIR---KSLLPEHIQ 237

Query: 227 HLLKPICRLTSGPSRESLISWDNKKEKGFRITTDSRILQSILQWTSDDEVRKMVYIQGHS 286
           H                           F       I+  +    SDD VR+  Y +   
Sbjct: 238 H--------------------------HFARDGSHLIIDGLHAEASDDLVREAAY-KIFL 270

Query: 287 VPQANH-EVLHELIAARNELAQIMGYRSYAEFIVMPNMASSPEVVKSFLLEMSKMIKPKA 345
            P A+  + L EL+++R+ LA+++GY +++   +   +A +PE V  FL ++S+ +  + 
Sbjct: 271 YPNADQLKCLEELLSSRDLLAKLVGYSTFSHRALQGTIAQTPETVMQFLEKLSEKLSERT 330

Query: 346 DEEFEAIKNFKRKSCGQKYVHLEPWDEAYYTAMMKSSAYNLDACVVASYFPLGQCIEGLK 405
            ++F+ ++  K K   Q    L PWD  YY+ ++++  YN++  +   +  LG C+EGL 
Sbjct: 331 RKDFKMMQGMKTKLNPQN-SKLMPWDPPYYSGVIRAERYNIEPSLYCPFLSLGACMEGLN 389

Query: 406 MLAESLFGVTFHSVPLAPGESWHPDVLKLSLQHPEEGEMGYLYLDLYSRAGKYTGCANFA 465
           +L   L G+T ++     GE W  D+ KL++ H  EG +GY+Y D + RA K     +F 
Sbjct: 390 VLFNKLLGITLYAEQTFKGEVWCNDIRKLAVVHESEGLLGYIYCDFFQRANKPQQDCHFT 449

Query: 466 IKGGRRLSETEYQLPVVALICNFP-GSHNLSVRLNHHEVETLFHEFGHALHSLLSRTDYQ 524
           I+GGR   +  YQLPVV L+ N P  S +    L    +E LFHE GHA+HS+L RT YQ
Sbjct: 450 IRGGRLKEDGSYQLPVVVLMLNLPHASRDFPTLLTPGMMENLFHEMGHAMHSMLGRTRYQ 509

Query: 525 HFSGTRVALDFAETPSNLFEYYAWDYRVLRRFAKHYLTGEIVPEKLVKSMQGARDMFAAT 584
           H +GTR   DFAE PS L EY++ DYRV+ +FAKHY TG+ +P+ +V  +  ++ +  A 
Sbjct: 510 HVTGTRCPTDFAEVPSILMEYFSNDYRVVSQFAKHYQTGQPLPKAMVSRLCESKKVCTAA 569

Query: 585 ELQRQIFYALVDQTLFGERLGQTRDTSSIVADMKRQHTSWNHVEGTHWHIRFSHFINYGA 644
           E+Q Q+FYA +DQ   G+     + T+ I+ + + Q     +V  T W +RFSH + YGA
Sbjct: 570 EMQLQVFYAALDQIYHGQH-PLKKSTTDILMETQEQFYGLPYVPDTAWQLRFSHLVGYGA 628

Query: 645 GYYSYLYAKCFAATIWQKLCQEDPLSLTTGTTLRTKILQHGGAKEPADMLNDLVGDGILR 704
            YYSYL ++  A+ IW++   +DP +   G   R ++L HGG KEP  M+      G+L+
Sbjct: 629 KYYSYLMSRAVASMIWKECFLQDPFNRAAGERYRREMLAHGGGKEPMLMIQ-----GMLQ 683

Query: 705 YCNGGIVPDITSFSDEV 721
            C     P I  F D +
Sbjct: 684 KC-----PSIDDFVDAL 695
Cleaves proteins, imported into the mitochondrion, to their mature size.
Mus musculus (taxid: 10090)
EC: 3EC: .EC: 4EC: .EC: 2EC: 4EC: .EC: 5EC: 9
>sp|Q99797|MIPEP_HUMAN Mitochondrial intermediate peptidase OS=Homo sapiens GN=MIPEP PE=1 SV=2 Back     alignment and function description
>sp|Q5RF14|MIPEP_PONAB Mitochondrial intermediate peptidase OS=Pongo abelii GN=MIPEP PE=2 SV=1 Back     alignment and function description
>sp|Q01992|MIPEP_RAT Mitochondrial intermediate peptidase OS=Rattus norvegicus GN=Mipep PE=1 SV=1 Back     alignment and function description
>sp|Q6CVF7|PMIP_KLULA Mitochondrial intermediate peptidase OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=OCT1 PE=3 SV=1 Back     alignment and function description
>sp|Q6FW88|PMIP_CANGA Mitochondrial intermediate peptidase OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=OCT1 PE=3 SV=1 Back     alignment and function description
>sp|A8QB25|PMIP_MALGO Mitochondrial intermediate peptidase OS=Malassezia globosa (strain ATCC MYA-4612 / CBS 7966) GN=OCT1 PE=3 SV=2 Back     alignment and function description
>sp|Q753X4|PMIP_ASHGO Mitochondrial intermediate peptidase OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=OCT1 PE=3 SV=1 Back     alignment and function description
>sp|A7TSL2|PMIP_VANPO Mitochondrial intermediate peptidase OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=OCT1 PE=3 SV=1 Back     alignment and function description
>sp|P35999|PMIP_YEAST Mitochondrial intermediate peptidase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=OCT1 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query733
255539725718 mitochondrial intermediate peptidase, pu 0.971 0.991 0.764 0.0
225455690771 PREDICTED: mitochondrial intermediate pe 0.980 0.932 0.746 0.0
224134506726 predicted protein [Populus trichocarpa] 0.969 0.979 0.751 0.0
297792465706 predicted protein [Arabidopsis lyrata su 0.961 0.998 0.695 0.0
79534875706 mitochondrial intermediate peptidase [Ar 0.961 0.998 0.693 0.0
9758196 860 unnamed protein product [Arabidopsis tha 0.952 0.811 0.697 0.0
449460804718 PREDICTED: mitochondrial intermediate pe 0.967 0.987 0.684 0.0
356510280711 PREDICTED: mitochondrial intermediate pe 0.926 0.954 0.716 0.0
357455965737 Mitochondrial intermediate peptidase [Me 0.934 0.929 0.666 0.0
326513266769 predicted protein [Hordeum vulgare subsp 0.929 0.885 0.630 0.0
>gi|255539725|ref|XP_002510927.1| mitochondrial intermediate peptidase, putative [Ricinus communis] gi|223550042|gb|EEF51529.1| mitochondrial intermediate peptidase, putative [Ricinus communis] Back     alignment and taxonomy information
 Score = 1162 bits (3006), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 552/722 (76%), Positives = 628/722 (86%), Gaps = 10/722 (1%)

Query: 13  MWTLIRRTAPFVRCKSCYSDHSTTRHFYTRTSNGVPTGLYGFDHLKSPNGFQRFVDDAIE 72
           M TL+RR A   + +S +SD S TR+F T       TGLYGFDHLK+P GF++FVD+AI+
Sbjct: 1   MSTLLRRAA--WKLRSLHSDLSETRNFST-------TGLYGFDHLKTPKGFRQFVDEAIQ 51

Query: 73  RSSELVNYISEMPSSVEIIRAMDEISDAVCSVVDSAELCRQTHPDREFVEEASKASMRIS 132
           RS ELVN IS   SS EIIRAMDEIS+ VC VVDSAELCR THPDREFVEEA+KASMRI+
Sbjct: 52  RSGELVNNISVTLSSAEIIRAMDEISNTVCCVVDSAELCRNTHPDREFVEEANKASMRIN 111

Query: 133 EYLHYLNTNHTLYDAVKKAELDGHLLSKEAHRAANHLRIDFEKGGIHLCADKLDRVNQLN 192
           EYLHYLNTNHTLYDAVK+AE DGHLL+KEA +AA+HLRIDFEKGGIHL ++KLDRVNQLN
Sbjct: 112 EYLHYLNTNHTLYDAVKRAEQDGHLLTKEAQKAAHHLRIDFEKGGIHLSSEKLDRVNQLN 171

Query: 193 MDIFQLCREFNQNIINDPGHVDIFPESRIPKHIHHLLKPICRLTSGPSRESLISWDNKKE 252
           MDIFQL REF++NI  DPGHVDI+P SRIPKHIHHLL PI R TSG S  S   W+N KE
Sbjct: 172 MDIFQLSREFSENISIDPGHVDIYPASRIPKHIHHLLTPIHRFTSGASGGSRGPWNNTKE 231

Query: 253 KGFRITTDSRILQSILQWTSDDEVRKMVYIQGHSVPQANHEVLHELIAARNELAQIMGYR 312
           KGF+ITTD R L S+LQW SDDEVRK+ YI+G+SVP AN +VL +LIAAR+ELAQIMGY+
Sbjct: 232 KGFQITTDPRTLVSVLQWASDDEVRKIAYIKGNSVPHANIKVLDKLIAARHELAQIMGYK 291

Query: 313 SYAEFIVMPNMASSPEVVKSFLLEMSKMIKPKADEEFEAIKNFKRKSCGQKYVHLEPWDE 372
           SYAEF+V PN+ASSP+VV SFL EMS++++PKAD+EFEAI+NFK++ CG+K + LEPWDE
Sbjct: 292 SYAEFMVKPNLASSPKVVTSFLNEMSQLVRPKADKEFEAIRNFKKQKCGKKCIDLEPWDE 351

Query: 373 AYYTAMMKSSAYNLDACVVASYFPLGQCIEGLKMLAESLFGVTFHSVPLAPGESWHPDVL 432
           A+YT MMKSSA NLD+ +VASYFPL QCIEGLK+L  SLFG TFH+VP+APGESWHPDVL
Sbjct: 352 AHYTGMMKSSAQNLDSSIVASYFPLAQCIEGLKVLVNSLFGATFHNVPMAPGESWHPDVL 411

Query: 433 KLSLQHPEEGEMGYLYLDLYSRAGKYTGCANFAIKGGRRLSETEYQLPVVALICNFPGSH 492
           K++  HPEEG++GYLYLDLYSR GKY GCANFAIKGG R SET+YQLPVVAL+CNF GS 
Sbjct: 412 KMAFHHPEEGDLGYLYLDLYSRKGKYPGCANFAIKGGCRFSETDYQLPVVALVCNFSGSR 471

Query: 493 NLS-VRLNHHEVETLFHEFGHALHSLLSRTDYQHFSGTRVALDFAETPSNLFEYYAWDYR 551
           + S VRLNH EVETLFHEFGHALHSL SRTDYQHFSGTRV LDFAE PSNLFEYYAWDYR
Sbjct: 472 SSSNVRLNHWEVETLFHEFGHALHSLFSRTDYQHFSGTRVVLDFAEMPSNLFEYYAWDYR 531

Query: 552 VLRRFAKHYLTGEIVPEKLVKSMQGARDMFAATELQRQIFYALVDQTLFGERLGQTRDTS 611
           VLR FAKHY TGEI+PEKLVK+MQGARDMF+ATELQRQ+FYALVDQTLFGE+   +RDTS
Sbjct: 532 VLRTFAKHYSTGEIIPEKLVKAMQGARDMFSATELQRQVFYALVDQTLFGEQPASSRDTS 591

Query: 612 SIVADMKRQHTSWNHVEGTHWHIRFSHFINYGAGYYSYLYAKCFAATIWQKLCQEDPLSL 671
           SIVAD+KRQHTSW HVEGTHW IRFSH +NYGAGYYSYLYA+CFAATIWQKLCQEDPLSL
Sbjct: 592 SIVADLKRQHTSWKHVEGTHWQIRFSHLVNYGAGYYSYLYARCFAATIWQKLCQEDPLSL 651

Query: 672 TTGTTLRTKILQHGGAKEPADMLNDLVGDGILRYCNGGIVPDITSFSDEVKLMEDKQEQI 731
           TTGT LRTK+LQHGGAKEPA+MLNDL G+GI+RYCNGGIVPD+TSF DE+ L+ED+  QI
Sbjct: 652 TTGTALRTKLLQHGGAKEPAEMLNDLAGEGIVRYCNGGIVPDMTSFLDELDLVEDQHLQI 711

Query: 732 LL 733
            +
Sbjct: 712 QM 713

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225455690|ref|XP_002265587.1| PREDICTED: mitochondrial intermediate peptidase [Vitis vinifera] Back     alignment and taxonomy information
>gi|224134506|ref|XP_002321840.1| predicted protein [Populus trichocarpa] gi|222868836|gb|EEF05967.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297792465|ref|XP_002864117.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297309952|gb|EFH40376.1| predicted protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|79534875|ref|NP_199967.2| mitochondrial intermediate peptidase [Arabidopsis thaliana] gi|332008712|gb|AED96095.1| mitochondrial intermediate peptidase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|9758196|dbj|BAB08670.1| unnamed protein product [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|449460804|ref|XP_004148134.1| PREDICTED: mitochondrial intermediate peptidase-like [Cucumis sativus] gi|449499651|ref|XP_004160875.1| PREDICTED: mitochondrial intermediate peptidase-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356510280|ref|XP_003523867.1| PREDICTED: mitochondrial intermediate peptidase-like [Glycine max] Back     alignment and taxonomy information
>gi|357455965|ref|XP_003598263.1| Mitochondrial intermediate peptidase [Medicago truncatula] gi|355487311|gb|AES68514.1| Mitochondrial intermediate peptidase [Medicago truncatula] Back     alignment and taxonomy information
>gi|326513266|dbj|BAK06873.1| predicted protein [Hordeum vulgare subsp. vulgare] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query733
TAIR|locus:2153067706 AT5G51540 [Arabidopsis thalian 0.961 0.998 0.693 9.1e-274
ZFIN|ZDB-GENE-060503-662702 mipep "mitochondrial intermedi 0.574 0.599 0.396 2.4e-108
UNIPROTKB|F1P174711 MIPEP "Uncharacterized protein 0.575 0.593 0.386 3.5e-107
UNIPROTKB|F1MX73712 MIPEP "Uncharacterized protein 0.600 0.617 0.378 5.1e-106
MGI|MGI:1917728711 Mipep "mitochondrial intermedi 0.605 0.624 0.368 2.2e-105
UNIPROTKB|Q99797713 MIPEP "Mitochondrial intermedi 0.607 0.624 0.367 6.5e-104
UNIPROTKB|F1PWG7616 MIPEP "Uncharacterized protein 0.603 0.717 0.378 9.5e-103
RGD|621680710 Mipep "mitochondrial intermedi 0.589 0.608 0.382 3.2e-102
UNIPROTKB|Q01992710 Mipep "Mitochondrial intermedi 0.589 0.608 0.382 3.2e-102
ZFIN|ZDB-GENE-050506-64676 im:6903007 "im:6903007" [Danio 0.544 0.590 0.406 2.8e-101
TAIR|locus:2153067 AT5G51540 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2632 (931.6 bits), Expect = 9.1e-274, P = 9.1e-274
 Identities = 494/712 (69%), Positives = 583/712 (81%)

Query:    13 MWTLIRRTAPFVRCKSCYSDHSTTRHFYTRTSNGVPTGLYGFDHLKSPNGFQRFVDDAIE 72
             MW L RR  P +      S     R+F    + G  TGLYGFDHLK+  GFQRFV DAIE
Sbjct:     1 MWKLTRRLQPHIN-----STRWLVRNFRNGGA-GDATGLYGFDHLKTAKGFQRFVADAIE 54

Query:    73 RSSELVNYISEMPSSVEIIRAMDEISDAVCSVVDSAELCRQTHPDREFVEEASKASMRIS 132
             RS ELV+YIS MPSS EII+AMDEISD VC VVDSAELCRQTHPDREFVEEA+KA++ ++
Sbjct:    55 RSGELVSYISGMPSSPEIIKAMDEISDTVCCVVDSAELCRQTHPDREFVEEANKAAIEMN 114

Query:   133 EYLHYLNTNHTLYDAVKKAELDGHLLSKEAHRAANHLRIDFEKGGIHLCADKLDRVNQLN 192
             +YLH+LNTNHTLY AVKKAE D +LL+KEA R A+HLR+DFE+GGIHL  +KLD+VN L 
Sbjct:   115 DYLHHLNTNHTLYAAVKKAEQDSNLLTKEASRTAHHLRMDFERGGIHLDPEKLDKVNNLT 174

Query:   193 MDIFQLCREFNQNIINDPGHVDIFPESRIPKHIHHLLKPICRLTSGPSRESLISWDNKKE 252
              +IFQLCREF++NI +DPGHVDIFP SRIP+H+HHLL P  R TSG SR S  S    K+
Sbjct:   175 TNIFQLCREFSENIADDPGHVDIFPGSRIPRHLHHLLNPTYRSTSGGSRGSTRSAHKSKQ 234

Query:   253 KGFRITTDSRILQSILQWTSDDEVRKMVYIQGHSVPQANHEVLHELIAARNELAQIMGYR 312
             KGFRI TD R + SILQWTSD+EVRKMVYIQG+SVP ANH VL +LIAAR+EL+Q+MG  
Sbjct:   235 KGFRINTDPRTVSSILQWTSDEEVRKMVYIQGNSVPHANHGVLEKLIAARHELSQMMGCN 294

Query:   313 SYAEFIVMPNMASSPEVVKSFLLEMSKMIKPKADEEFEAIKNFKRKSCGQKYVHLEPWDE 372
             SYA+ +V PN+A SP+VV SFL E+SK +KPKADEEF AI++FKR+ CG     LEPWDE
Sbjct:   295 SYADIMVEPNLAKSPKVVTSFLQELSKTVKPKADEEFIAIRDFKREKCGNPSAELEPWDE 354

Query:   373 AYYTAMMKSSAYNLDACVVASYFPLGQCIEGLKMLAESLFGVTFHSVPLAPGESWHPDVL 432
              YYT+MMKSS  ++D  VVASYFPL QCIEGLK+L ESLFG TFH++PLAPGESWHP+V+
Sbjct:   355 TYYTSMMKSSINDVDTAVVASYFPLPQCIEGLKVLVESLFGATFHTIPLAPGESWHPNVV 414

Query:   433 KLSLQHPEEGEMGYLYLDLYSRAGKYTGCANFAIKGGRRLSETEYQLPVVALICNFPGSH 492
             KLSL HP+EG++GYLYLDLYSR GKY GCA+FAI+GGR++SETEYQLPV+AL+CNF  + 
Sbjct:   415 KLSLHHPDEGDLGYLYLDLYSRKGKYPGCASFAIRGGRKISETEYQLPVIALVCNFSRAC 474

Query:   493 NLS-VRLNHHEVETLFHEFGHALHSLLSRTDYQHFSGTRVALDFAETPSNLFEYYAWDYR 551
             + S V+LNH EVE LFHEFGHALHSLLSRTDYQHFSGTRVALD AE PSNLFEYYAWDYR
Sbjct:   475 DSSIVKLNHSEVEVLFHEFGHALHSLLSRTDYQHFSGTRVALDLAEMPSNLFEYYAWDYR 534

Query:   552 VLRRFAKHYLTGEIVPEKLVKSMQGARDMFAATELQRQIFYALVDQTLFGERLGQTRDTS 611
             +L+RFA+HY TGE +PEKLV S+QGAR+MFAATE+QRQ+FYAL+DQ LFGE+    RD S
Sbjct:   535 LLKRFARHYSTGETIPEKLVNSLQGARNMFAATEMQRQVFYALIDQMLFGEQPETARDVS 594

Query:   612 SIVADMKRQHTSWNHVEGTHWHIRFSHFINYGAGYYSYLYAKCFAATIWQKLCQEDPLSL 671
              +VA++KRQHTSWNHVEGTHW+IRFSH +NYGAGYYSYLYAKCFA+TIWQ +C+EDPLSL
Sbjct:   595 HLVAELKRQHTSWNHVEGTHWYIRFSHLLNYGAGYYSYLYAKCFASTIWQSICEEDPLSL 654

Query:   672 TTGTTLRTKILQHGGAKEPADMLNDLVGDGILRYCNGGIVPDITSFSDEVKL 723
              TGT LR K  +HGGAK+PA++L DL G  I+     GIVP  T   +E++L
Sbjct:   655 NTGTLLREKFFKHGGAKDPAELLTDLAGKEIISVHGEGIVPATTYLLNELRL 706
GO:0004222 "metalloendopeptidase activity" evidence=IEA;ISS
GO:0005739 "mitochondrion" evidence=ISM
GO:0006508 "proteolysis" evidence=IEA;ISS
GO:0009507 "chloroplast" evidence=IDA
GO:0009535 "chloroplast thylakoid membrane" evidence=IDA
GO:0019243 "methylglyoxal catabolic process to D-lactate" evidence=RCA
ZFIN|ZDB-GENE-060503-662 mipep "mitochondrial intermediate peptidase" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1P174 MIPEP "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1MX73 MIPEP "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
MGI|MGI:1917728 Mipep "mitochondrial intermediate peptidase" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q99797 MIPEP "Mitochondrial intermediate peptidase" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1PWG7 MIPEP "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
RGD|621680 Mipep "mitochondrial intermediate peptidase" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q01992 Mipep "Mitochondrial intermediate peptidase" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-050506-64 im:6903007 "im:6903007" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q6CVF7PMIP_KLULA3, ., 4, ., 2, 4, ., 5, 90.31100.88670.8344yesno
A6H611MIPEP_MOUSE3, ., 4, ., 2, 4, ., 5, 90.34120.85810.8846yesno
Q5RF14MIPEP_PONAB3, ., 4, ., 2, 4, ., 5, 90.33980.84440.8681yesno
P35999PMIP_YEAST3, ., 4, ., 2, 4, ., 5, 90.30550.90850.8626yesno
Q01992MIPEP_RAT3, ., 4, ., 2, 4, ., 5, 90.34500.85120.8788yesno
Q753X4PMIP_ASHGO3, ., 4, ., 2, 4, ., 5, 90.30550.87310.8247yesno
Q99797MIPEP_HUMAN3, ., 4, ., 2, 4, ., 5, 90.33980.84440.8681yesno
Q6FW88PMIP_CANGA3, ., 4, ., 2, 4, ., 5, 90.31360.85940.8278yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.4.24.590.824
3rd Layer3.4.240.766

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00008772001
SubName- Full=Chromosome chr16 scaffold_207, whole genome shotgun sequence; (771 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00004136001
SubName- Full=Chromosome undetermined scaffold_611, whole genome shotgun sequence; (78 aa)
  •     0.503

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query733
cd06457606 cd06457, M3A_MIP, Peptidase M3 mitochondrial inter 0.0
cd09605590 cd09605, M3A, Peptidase M3A family includes Thimet 1e-171
cd06455637 cd06455, M3A_TOP, Peptidase M3 Thimet oligopeptida 1e-169
COG0339683 COG0339, Dcp, Zn-dependent oligopeptidases [Amino 1e-135
pfam01432450 pfam01432, Peptidase_M3, Peptidase family M3 1e-110
cd06456654 cd06456, M3A_DCP, Peptidase family M3 dipeptidyl c 1e-102
PRK10911680 PRK10911, PRK10911, oligopeptidase A; Provisional 2e-67
cd06457606 cd06457, M3A_MIP, Peptidase M3 mitochondrial inter 2e-56
PRK10280681 PRK10280, PRK10280, dipeptidyl carboxypeptidase II 7e-41
cd09605590 cd09605, M3A, Peptidase M3A family includes Thimet 5e-30
cd06258400 cd06258, M3_like, Peptidase M3-like family, a zinc 7e-25
COG1164598 COG1164, COG1164, Oligoendopeptidase F [Amino acid 2e-10
cd06459450 cd06459, M3B_PepF, Peptidase family M3B Oligopepti 2e-07
cd09606546 cd09606, M3B_PepF_1, Peptidase family M3B Oligopep 1e-06
TIGR02290587 TIGR02290, M3_fam_3, oligoendopeptidase, pepF/M3 f 1e-05
TIGR00181591 TIGR00181, pepF, oligoendopeptidase F 4e-04
cd09610472 cd09610, M3B_PepF_5, Peptidase family M3B Oligopep 8e-04
>gnl|CDD|188996 cd06457, M3A_MIP, Peptidase M3 mitochondrial intermediate peptidase (MIP) Back     alignment and domain information 
 Score =  638 bits (1649), Expect = 0.0
 Identities = 208/434 (47%), Positives = 280/434 (64%), Gaps = 2/434 (0%)

Query: 272 SDDEVRKMVYIQGHSVPQANHEVLHELIAARNELAQIMGYRSYAEFIVMPNMASSPEVVK 331
            D+ VRK VY   HS  +   EVL EL++AR+ELAQ++G+ SYA   +   MA +PE V+
Sbjct: 165 PDESVRKKVYKAAHSPSEEQEEVLEELLSARHELAQLLGFESYAHRALSDKMAKNPENVR 224

Query: 332 SFLLEMSKMIKPKADEEFEAIKNFKRKSCGQKYVHLEPWDEAYYTAMMKSSAYNLDACVV 391
            FL  +SK ++PKA++E   +   KRK  G+    L+PWD  YYT+  + +A   D+  +
Sbjct: 225 EFLEALSKKLRPKAEKELSVLARLKRKHSGKSLPTLQPWDRDYYTSKARQAACPSDSQEL 284

Query: 392 ASYFPLGQCIEGLKMLAESLFGVTFHSVPLAPGESWHPDVLKLSLQHPEEGEMGYLYLDL 451
           + YF LG  +EGL  L   L+G+    VP APGE+WHPDV KL++ H  EG +GY+Y DL
Sbjct: 285 SPYFSLGTVMEGLSRLFSRLYGIRLVPVPTAPGETWHPDVRKLAVVHETEGLLGYIYCDL 344

Query: 452 YSRAGKYTGCANFAIKGGRRLSETEYQLPVVALICNFPGSHNLSV-RLNHHEVETLFHEF 510
           + R GK    A+F I+  RRL +  YQLPVVAL+CNFP     S   L+H EVETLFHE 
Sbjct: 345 FERPGKPPQAAHFTIRCSRRLDDGSYQLPVVALVCNFPPPSGSSPTLLSHGEVETLFHEM 404

Query: 511 GHALHSLLSRTDYQHFSGTRVALDFAETPSNLFEYYAWDYRVLRRFAKHYLTGEIVPEKL 570
           GHA+HS+L RT YQH SGTR A DF E PS L EY+AWD RVL  FA+HY TGE +PEKL
Sbjct: 405 GHAMHSMLGRTKYQHVSGTRCATDFVELPSILMEYFAWDPRVLSLFARHYSTGEPLPEKL 464

Query: 571 VKSMQGARDMFAATELQRQIFYALVDQTLFGERLGQTR-DTSSIVADMKRQHTSWNHVEG 629
           V  +  ++ +FAA E Q+QI YAL+DQ    E        ++ I  D++R+++   +V G
Sbjct: 465 VARLCASKFLFAALETQQQILYALLDQEYHSEHPLPPSFSSTDIYHDLQRKYSGLPYVPG 524

Query: 630 THWHIRFSHFINYGAGYYSYLYAKCFAATIWQKLCQEDPLSLTTGTTLRTKILQHGGAKE 689
           T W +RF H + YGA YYSYL+ +  A+ IWQKL   DPLS   G  LR ++L+HGG K+
Sbjct: 525 TAWQLRFGHLVGYGATYYSYLFDRAIASKIWQKLFAADPLSREAGERLREEVLKHGGGKD 584

Query: 690 PADMLNDLVGDGIL 703
           P ++L D++G+  L
Sbjct: 585 PWELLADVLGEPPL 598

Peptidase M3 mitochondrial intermediate peptidase (MIP; EC 3.4.24.59) belongs to the widespread subfamily M3A, that show similarity to the Thimet oligopeptidase (TOP). It is one of three peptidases responsible for the proteolytic processing of both, nuclear and mitochondrial encoded precursor polypeptides targeted to the various subcompartments of the mitochondria. It cleaves intermediate-size proteins initially processed by mitochondrial processing peptidase (MPP) to yield a processing intermediate with a typical N-terminal octapeptide that is sequentially cleaved by MIP to mature-size protein. MIP cleaves precursor proteins of respiratory components, including subunits of the electron transport chain and tri-carboxylic acid cycle enzymes, and components of the mitochondrial genetic machinery, including ribosomal proteins, translation factors, and proteins required for mitochondrial DNA metabolism. It has been suggested that the human MIP (HMIP polypeptide; gene symbol MIPEP) may be one of the loci predicted to influence the clinical manifestations of Friedreich's ataxia (FRDA), an autosomal recessive neurodegenerative disease caused by lack of human frataxin. These proteins are enriched in cysteine residues, two of which are highly conserved, suggesting their importance to stability as well as in formation of metal binding sites, thus playing a role in MIP activity. Length = 606
>gnl|CDD|189012 cd09605, M3A, Peptidase M3A family includes Thimet oligopeptidase, dipeptidyl carboxypeptidase and mitochondrial intermediate peptidase Back     alignment and domain information
>gnl|CDD|188994 cd06455, M3A_TOP, Peptidase M3 Thimet oligopeptidase (TOP) also includes neurolysin Back     alignment and domain information
>gnl|CDD|223416 COG0339, Dcp, Zn-dependent oligopeptidases [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|216500 pfam01432, Peptidase_M3, Peptidase family M3 Back     alignment and domain information
>gnl|CDD|188995 cd06456, M3A_DCP, Peptidase family M3 dipeptidyl carboxypeptidase (DCP) Back     alignment and domain information
>gnl|CDD|182832 PRK10911, PRK10911, oligopeptidase A; Provisional Back     alignment and domain information
>gnl|CDD|188996 cd06457, M3A_MIP, Peptidase M3 mitochondrial intermediate peptidase (MIP) Back     alignment and domain information
>gnl|CDD|182353 PRK10280, PRK10280, dipeptidyl carboxypeptidase II; Provisional Back     alignment and domain information
>gnl|CDD|189012 cd09605, M3A, Peptidase M3A family includes Thimet oligopeptidase, dipeptidyl carboxypeptidase and mitochondrial intermediate peptidase Back     alignment and domain information
>gnl|CDD|188993 cd06258, M3_like, Peptidase M3-like family, a zincin metallopeptidase, includes M3 and M32 families Back     alignment and domain information
>gnl|CDD|224086 COG1164, COG1164, Oligoendopeptidase F [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|188997 cd06459, M3B_PepF, Peptidase family M3B Oligopeptidase F (PepF) Back     alignment and domain information
>gnl|CDD|189013 cd09606, M3B_PepF_1, Peptidase family M3B Oligopeptidase F (PepF) Back     alignment and domain information
>gnl|CDD|233812 TIGR02290, M3_fam_3, oligoendopeptidase, pepF/M3 family Back     alignment and domain information
>gnl|CDD|232861 TIGR00181, pepF, oligoendopeptidase F Back     alignment and domain information
>gnl|CDD|189017 cd09610, M3B_PepF_5, Peptidase family M3B Oligopeptidase F (PepF) Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 733
COG0339683 Dcp Zn-dependent oligopeptidases [Amino acid trans 100.0
PRK10280681 dipeptidyl carboxypeptidase II; Provisional 100.0
PRK10911680 oligopeptidase A; Provisional 100.0
KOG2090704 consensus Metalloendopeptidase family - mitochondr 100.0
KOG2089718 consensus Metalloendopeptidase family - saccharoly 100.0
cd06457458 M3A_MIP Peptidase M3 mitochondrial intermediate pe 100.0
cd06455472 M3A_TOP Peptidase M3 Thimet oligopeptidase (TOP; P 100.0
cd06456422 M3A_DCP_Oligopeptidase_A Peptidase family M3 dipep 100.0
PF01432458 Peptidase_M3: Peptidase family M3 This Prosite mot 100.0
cd06258365 Peptidase_M3_like The peptidase M3-like family, al 100.0
TIGR02289549 M3_not_pepF oligoendopeptidase, M3 family. This fa 100.0
TIGR00181591 pepF oligoendopeptidase F. This family represents 100.0
cd06459427 M3B_Oligoendopeptidase_F Peptidase family M3B Olig 100.0
TIGR02290587 M3_fam_3 oligoendopeptidase, pepF/M3 family. The M 100.0
COG1164598 Oligoendopeptidase F [Amino acid transport and met 100.0
cd06461477 M2_ACE Peptidase family M2 Angiotensin converting 99.95
cd06460396 M32_Taq Peptidase family M32 is a subclass of meta 99.93
PF02074494 Peptidase_M32: Carboxypeptidase Taq (M32) metallop 99.82
PF01401595 Peptidase_M2: Angiotensin-converting enzyme This P 99.79
COG2317497 Zn-dependent carboxypeptidase [Amino acid transpor 99.72
KOG3690646 consensus Angiotensin I-converting enzymes - M2 fa 99.56
cd04277186 ZnMc_serralysin_like Zinc-dependent metalloproteas 87.74
COG2856213 Predicted Zn peptidase [Amino acid transport and m 87.05
cd04278157 ZnMc_MMP Zinc-dependent metalloprotease, matrix me 80.87
PF06114122 DUF955: Domain of unknown function (DUF955); Inter 80.41
PF14247220 DUF4344: Domain of unknown function (DUF4344) 80.13
>COG0339 Dcp Zn-dependent oligopeptidases [Amino acid transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=3.6e-147  Score=1213.68  Aligned_cols=649  Identities=29%  Similarity=0.514  Sum_probs=613.3

Q ss_pred             CCCCCCCCCCCCCcCChHHHHHHHHHHHHHHHHHHHcC---CChHHHHHHHHHhhHHHhhhhchhhhhhccCCchHHHHH
Q 037955           47 VPTGLYGFDHLKSPNGFQRFVDDAIERSSELVNYISEM---PSSVEIIRAMDEISDAVCSVVDSAELCRQTHPDREFVEE  123 (733)
Q Consensus        47 ~~~gl~~~~~l~~p~~~~~~~~~~i~~~~~~i~~i~~~---~~~~~~v~~ld~~~~~l~~~~~~~~~~~~~~~d~e~r~a  123 (733)
                      +-.|+|.|..+ .|+++.|++++++++|++.|++|...   |||+|+|.+|+++++.||++++++++++++|+|+++|++
T Consensus        14 ~~~~lP~F~~i-~~ed~~pAf~~~l~~~~~~i~~i~~~~~~pt~~n~v~~Le~~~~~L~rv~~~~~~l~~v~~~~elr~a   92 (683)
T COG0339          14 PFGGLPPFDAI-KPEDVKPAFDEALAQARAEIDAIAANPDAPTWENTVEPLERAGDRLGRVWSVVSHLNSVHNSPELREA   92 (683)
T ss_pred             CcCCCCCcccC-ChhhccHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCCHHHHHH
Confidence            34579999999 59999999999999999999999864   699999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhCCHHHHHHHHHHh--hcCCCCCHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHH
Q 037955          124 ASKASMRISEYLHYLNTNHTLYDAVKKAE--LDGHLLSKEAHRAANHLRIDFEKGGIHLCADKLDRVNQLNMDIFQLCRE  201 (733)
Q Consensus       124 a~~~~~~l~~~~~~l~~~~~Ly~~l~~~~--~~~~~L~~e~~r~l~~~~~~f~~~G~~L~~~~r~~~~~l~~~i~~L~~~  201 (733)
                      ++++.+++++|++.|++|..||++++++.  .+...||+|++|+++..+++|+++|+.|++++|+|+.+|++|+++|+++
T Consensus        93 ~e~~~pklse~~~~l~~~~~Lf~~~~al~~~~e~~~ld~e~~r~~e~~~rdF~~sGa~L~~~~k~r~~~I~~ela~L~~~  172 (683)
T COG0339          93 YEEILPKLSEFSNDLGQNPGLFARYKALWQSPESAGLDPEQKRVVENALRDFVLSGAKLPPEKKARLAEINTELAELGAQ  172 (683)
T ss_pred             HHHhhHHHHHHHHHhhcCHHHHHHHHHHhcCcccccCCHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999993  3466799999999999999999999999999999999999999999999


Q ss_pred             HHhhcccCCC-C---c-ccccCCCCCHHHHHhhccccccCCCCCcchhhhhcccCCCCEEEecCCCcHHHHhhhCCCHHH
Q 037955          202 FNQNIINDPG-H---V-DIFPESRIPKHIHHLLKPICRLTSGPSRESLISWDNKKEKGFRITTDSRILQSILQWTSDDEV  276 (733)
Q Consensus       202 F~~ni~~~~~-~---v-~~~~l~glp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~l~~~~~~~vL~~~~d~~~  276 (733)
                      |++|+.+++. +   + +..+|+|||++.+++++..+              ..++.+||.||++.|++.|+|++|.||++
T Consensus       173 Fs~nvL~at~~~~~~~~~~~~LaGlp~~~l~aa~~~A--------------~~kg~~~~~itl~~p~~~p~l~~~~~r~l  238 (683)
T COG0339         173 FSNNVLDATKAWALIVTDEAELAGLPESLLAAAAAAA--------------EAKGLEGYLITLDIPSYLPVLTYADNRAL  238 (683)
T ss_pred             HHhhhccccccceeecCcHHHhcCCCHHHHHHHHHHH--------------HhcCCCCeEEeecccchhHHHHhcccHHH
Confidence            9999997773 2   2 24579999999999998763              33344789999999999999999999999


Q ss_pred             HHHHHHHhccC-----CcchHHHHHHHHHHHHHHHHHcCCCCHHHHHhccCcCCCHHHHHHHHHHHHHhhhHHHHHHHHH
Q 037955          277 RKMVYIQGHSV-----PQANHEVLHELIAARNELAQIMGYRSYAEFIVMPNMASSPEVVKSFLLEMSKMIKPKADEEFEA  351 (733)
Q Consensus       277 Rk~~~~a~~~~-----~~~n~~~l~~ll~lR~e~A~llGy~sya~~~l~~~ma~spe~V~~fL~~l~~~~~p~~~~e~~~  351 (733)
                      |+++|+|+..+     ..+|.+++.+++++|.|+|+||||+|||+|+|.++||++|+.|.+||++|+.+.+|.+++|++.
T Consensus       239 Re~~y~A~~~ra~~~~~~~n~~ii~~~L~LR~E~A~LLGf~~yA~~~L~~kMA~~p~~Vl~fL~~l~~ka~~~a~~e~a~  318 (683)
T COG0339         239 REKLYRAYVTRASEGGPNDNRAIIEEILKLRAELAKLLGFSNYAEYSLADKMAKTPEAVLNFLNDLAEKARPQAEKELAE  318 (683)
T ss_pred             HHHHHHHHhhhccccCCcccHHHHHHHHHHHHHHHHHcCcccHHHHhHHHHhhcCHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence            99999998753     3458899999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHh-cCCCCCCCCcCCHHHHHHHhhhhccCCChhhccCCCCHHHHHHHHHHHHHHhhCceeEeecCCCCCccccc
Q 037955          352 IKNFKRKS-CGQKYVHLEPWDEAYYTAMMKSSAYNLDACVVASYFPLGQCIEGLKMLAESLFGVTFHSVPLAPGESWHPD  430 (733)
Q Consensus       352 L~~~~~~~-~g~~~~~l~pWD~~y~~~~~~~~~~~~d~~~~~~yfpl~~vl~gl~~l~~~lfgi~~~~~~~~~~~~wh~d  430 (733)
                      |+.++++. .|  ..+++|||+.||++++|+.+|++|.+++++|||++.|++|+|+++++||||+|++..  ++++||||
T Consensus       319 L~~~~~~~~~~--~~~l~~WD~~yyaeK~r~~~y~~de~elrpYF~l~~Vl~GlF~~~~rLfGI~~~e~~--~~~vwHpD  394 (683)
T COG0339         319 LQAFAAEEEGG--LPELQPWDWAYYAEKQRQEKYAFDEEELRPYFPLNKVLEGLFEVAKRLFGITFVERK--DIPVWHPD  394 (683)
T ss_pred             HHHHHHhhccC--CcccchhhHHHHHHHHHhhhcCCCHHHhhhcCChhHHHHHHHHHHHHHcCeEEEECC--CCCccCCC
Confidence            99999885 44  678999999999999999999999999999999999999999999999999999974  46899999


Q ss_pred             cceeEEEcCCCCcccceeeecccCCCCccCcccccccCceecCCCCccccEEEEEccCCCCCCC-CCCcChhhHHHHHHH
Q 037955          431 VLKLSLQHPEEGEMGYLYLDLYSRAGKYTGCANFAIKGGRRLSETEYQLPVVALICNFPGSHNL-SVRLNHHEVETLFHE  509 (733)
Q Consensus       431 V~~~~v~d~~~~~lg~~ylDl~~R~gK~~ga~~~~i~~~~~~~~g~~~~P~v~l~~Nf~~~~~~-~~lL~~~~v~TLfHE  509 (733)
                      |++|+|+|.+|..+|.||+|+|+|+||++||||+++++++.+.+|+.+.||++++|||++|.++ |+||+|+||+|||||
T Consensus       395 Vr~~~v~d~~g~~~g~fY~DlyaR~~KrgGAWM~~~~~~~~~~~~~~q~PV~ylvCNF~~p~~gkPaLls~dEV~TLFHE  474 (683)
T COG0339         395 VRVFEVFDENGELIGLFYLDLYARDGKRGGAWMDDFVSQRRLDDGGGQKPVIYLVCNFTKPVGGKPALLSHDEVTTLFHE  474 (683)
T ss_pred             ceEEEEEcCCCCEEEEEEeecccCCCCccchHHHHhhhcccccCCCcccceEEEeccCCCCCCCCCceeeHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999998899999999999999999876 599999999999999


Q ss_pred             HHHHHHHhhhcCCCCccCCCcccchhhhhhHHHHHHhhhcHHHHHHHHhcccCCCCChHHHHHHHHHhhhhhhHHHHHHH
Q 037955          510 FGHALHSLLSRTDYQHFSGTRVALDFAETPSNLFEYYAWDYRVLRRFAKHYLTGEIVPEKLVKSMQGARDMFAATELQRQ  589 (733)
Q Consensus       510 fGHalH~lls~~~~~~~sgt~~~~D~~E~pS~~~E~~~~~~~~L~~~s~h~~tge~lp~~l~~~l~~~~~~~~~~~~~~q  589 (733)
                      |||+||+||++++|+.+|||+|+|||||+||||||||||+|.+|..||+||+||+|||++++++|.+++++++|+++++|
T Consensus       475 fGHgLH~mlt~v~~~~vsGt~v~wDfVElPSQ~mE~w~~~p~vL~~~a~Hy~TGe~lP~~ll~k~laaknf~~g~~t~rq  554 (683)
T COG0339         475 FGHGLHHLLTRVKYPGVSGTNVPWDFVELPSQFMENWCWEPEVLAKYARHYQTGEPLPKELLDKMLAAKNFQAGLFTLRQ  554 (683)
T ss_pred             hhhHHHHHhhcCCccccCCCCCCcchhhccHHHHHHhhcCHHHHHHHHHhhccCCcCHHHHHHHHHHHHhhhhHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhHHHhhcCC-CCCCCCHHHHHHHHHhhccCCCCCCCCcccccccccc--cccccchhHHHHHHHHHHHHHHHHHc
Q 037955          590 IFYALVDQTLFGER-LGQTRDTSSIVADMKRQHTSWNHVEGTHWHIRFSHFI--NYGAGYYSYLYAKCFAATIWQKLCQE  666 (733)
Q Consensus       590 l~~a~fD~~lh~~~-~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~f~Hl~--~Y~a~YYsYl~s~v~A~di~~~~~~~  666 (733)
                      +.+++|||.+|+.. |....++.++++++.+++...+.++..+|.++|+|||  ||+||||||+|++|+++|.|+.|++.
T Consensus       555 l~fal~Dm~~H~~~~~~~~~~i~~~~~~~~~~~~v~~~~~~~~~~~~F~HIFagGYsAGYYSY~WaeVLsaDafa~Fee~  634 (683)
T COG0339         555 LEFALFDMRLHTEFDPDANADILEFEAEVLKKVAVLPSIPPRRRPHSFGHIFAGGYSAGYYSYLWAEVLSADAFAAFEEE  634 (683)
T ss_pred             HHHHHHHHHhhccCCcccccCHHHHHHHHHHHhCCCCCcchhhccccccceecCcccchhHHHHHHHHHhhHHHHHHHhc
Confidence            99999999999974 4456889999999999998887777889999999999  69999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHhcCCCCCCHHHHHHHhcCCCcccccCCCCCCChHHHHHHcCCC
Q 037955          667 DPLSLTTGTTLRTKILQHGGAKEPADMLNDLVGDGILRYCNGGIVPDITSFSDEVKLM  724 (733)
Q Consensus       667 ~~~~~~~G~~~r~~vL~~Ggs~~~~ell~~flGrd~~~~~~~g~~p~~~a~l~~~g~~  724 (733)
                      |++|+++|++||+.||+.|||++|++++++|+||          +|+++|+|++.|+.
T Consensus       635 g~~~~e~G~rfrd~ILs~GGS~dp~e~f~~frGr----------ep~~dalLr~~Gl~  682 (683)
T COG0339         635 GPFNRETGQRFRDAILSRGGSRDPMELFKAFRGR----------EPSIDALLRHRGLA  682 (683)
T ss_pred             CCCCHHHHHHHHHHHHhccCCcCHHHHHHHHhcC----------CCChhHHHHhcCCC
Confidence            9999999999999999999999999999999999          69999999999985

>PRK10280 dipeptidyl carboxypeptidase II; Provisional Back     alignment and domain information
>PRK10911 oligopeptidase A; Provisional Back     alignment and domain information
>KOG2090 consensus Metalloendopeptidase family - mitochondrial intermediate peptidase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2089 consensus Metalloendopeptidase family - saccharolysin & thimet oligopeptidase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd06457 M3A_MIP Peptidase M3 mitochondrial intermediate peptidase (MIP; EC 3 Back     alignment and domain information
>cd06455 M3A_TOP Peptidase M3 Thimet oligopeptidase (TOP; PZ-peptidase; endo-oligopeptidase A; endopeptidase 24 Back     alignment and domain information
>cd06456 M3A_DCP_Oligopeptidase_A Peptidase family M3 dipeptidyl carboxypeptidase (DCP; Dcp II; peptidyl dipeptidase; EC 3 Back     alignment and domain information
>PF01432 Peptidase_M3: Peptidase family M3 This Prosite motif covers only the active site Back     alignment and domain information
>cd06258 Peptidase_M3_like The peptidase M3-like family, also called neurolysin-like family, is part of the "zincins" metallopeptidases, and includes M3, M2 and M32 families of metallopeptidases Back     alignment and domain information
>TIGR02289 M3_not_pepF oligoendopeptidase, M3 family Back     alignment and domain information
>TIGR00181 pepF oligoendopeptidase F Back     alignment and domain information
>cd06459 M3B_Oligoendopeptidase_F Peptidase family M3B Oligopeptidase F (PepF; Pz-peptidase B; EC 3 Back     alignment and domain information
>TIGR02290 M3_fam_3 oligoendopeptidase, pepF/M3 family Back     alignment and domain information
>COG1164 Oligoendopeptidase F [Amino acid transport and metabolism] Back     alignment and domain information
>cd06461 M2_ACE Peptidase family M2 Angiotensin converting enzyme (ACE, EC 3 Back     alignment and domain information
>cd06460 M32_Taq Peptidase family M32 is a subclass of metallocarboxypeptidases which are distributed mainly in bacteria and archaea, and contain a HEXXH motif that coordinates a divalent cation such as Zn2+ or Co2+, so far only observed in the active site of neutral metallopeptidases but not in carboxypeptidases Back     alignment and domain information
>PF02074 Peptidase_M32: Carboxypeptidase Taq (M32) metallopeptidase; InterPro: IPR001333 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>PF01401 Peptidase_M2: Angiotensin-converting enzyme This Prosite motif covers only the active site Back     alignment and domain information
>COG2317 Zn-dependent carboxypeptidase [Amino acid transport and metabolism] Back     alignment and domain information
>KOG3690 consensus Angiotensin I-converting enzymes - M2 family peptidases [Amino acid transport and metabolism] Back     alignment and domain information
>cd04277 ZnMc_serralysin_like Zinc-dependent metalloprotease, serralysin_like subfamily Back     alignment and domain information
>COG2856 Predicted Zn peptidase [Amino acid transport and metabolism] Back     alignment and domain information
>cd04278 ZnMc_MMP Zinc-dependent metalloprotease, matrix metalloproteinase (MMP) sub-family Back     alignment and domain information
>PF06114 DUF955: Domain of unknown function (DUF955); InterPro: IPR010359 This is a family of bacterial and viral proteins with undetermined function Back     alignment and domain information
>PF14247 DUF4344: Domain of unknown function (DUF4344) Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query733
1s4b_P674 Crystal Structure Of Human Thimet Oligopeptidase Le 3e-60
2o36_A674 Crystal Structure Of Engineered Thimet Oligopeptida 8e-60
2o3e_A678 Crystal Structure Of Engineered Neurolysin With Thi 5e-56
1i1i_P681 Neurolysin (Endopeptidase 24.16) Crystal Structure 2e-55
1y79_1680 Crystal Structure Of The E.Coli Dipeptidyl Carboxyp 4e-37
>pdb|1S4B|P Chain P, Crystal Structure Of Human Thimet Oligopeptidase Length = 674 Back     alignment and structure 
Iteration: 1

 Score =  230 bits (586), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 167/602 (27%), Positives = 290/602 (48%), Gaps = 46/602 (7%)
Query: 116 PDREFVEEASKASMRISEYLHYLNTNHTLYDAV----KKAELDGHLLSKEAHRAANHLRI 171
           P ++    +++A  ++SE+   ++    +Y  +    +K + D   L  EA R    L  
Sbjct: 75  PSKDIRTASTEADKKLSEFDVEMSMREDVYQRIVWLQEKVQKDS--LRPEAARYLERLIK 132
Query: 172 DFEKGGIHLCADKLDRVNQLNMDIFQLCREFNQNIINDPGHVDIFPESRIPKHIHHLLKP 231
              + G+HL  +  + + ++   +  LC +FN+N+  D         + +P  +  L   
Sbjct: 133 LGRRNGLHLPRETQENIKRIKKKLSLLCIDFNKNLNEDT--------TFLPFTLQEL--- 181
Query: 232 ICRLTSGPSRESLISWDNKKEKGFRITTDSRILQSILQWTSDDEVRKMVYIQGHS-VPQA 290
                 G   + L S +  ++   ++T        +L+     E R+ V    +S   + 
Sbjct: 182 -----GGLPEDFLNSLEKMEDGKLKVTLKYPHYFPLLKKCHVPETRRKVEEAFNSRCKEE 236
Query: 291 NHEVLHELIAARNELAQIMGYRSYAEFIVMPNMASSPEVVKSFLLEMSKMIKPKADEEFE 350
           N  +L EL+  R + ++++G+ ++A++++  NMA + + V +FL E+++ +KP  ++E  
Sbjct: 237 NSAILKELVTLRAQKSRLLGFHTHADYVLEMNMAKTSQTVATFLDELAQKLKPLGEQERA 296
Query: 351 AIKNFKRKSCGQKYV----HLEPWDEAYYTAMMKSSAYNLDACVVASYFPLGQCIEGLKM 406
            I   KR  C ++ +     +  WD  YY   ++ + Y +D  ++  YFP+     GL  
Sbjct: 297 VILELKRAECERRGLPFDGRIRAWDMRYYMNQVEETRYCVDQNLLKEYFPVQVVTHGLLG 356
Query: 407 LAESLFGVTFHSVPLAPGESWHPDVLKLSLQHPEEGEM-GYLYLDLYSRAGKYTGCANFA 465
           + + L G+ FH    A   +WH DV   + +    GE+ G  YLDLY R GKY   A F 
Sbjct: 357 IYQELLGLAFHHEEGA--SAWHEDVRLYTARDAASGEVVGKFYLDLYPREGKYGHAACFG 414
Query: 466 IKGGRRLSETEYQLPVVALICNF--PGSHNLSVRLNHHEVETLFHEFGHALHSLLSRTDY 523
           ++ G    +   Q+ + A++ NF  P +   S+ L H EVET FHEFGH +H L S+ ++
Sbjct: 415 LQPGCLRQDGSRQIAIAAMVANFTKPTADAPSL-LQHDEVETYFHEFGHVMHQLCSQAEF 473
Query: 524 QHFSGTRVALDFAETPSNLFEYYAWDYRVLRRFAKHYLTGEIVP----EKLVKSMQGARD 579
             FSGT V  DF E PS + E + W+   L R ++HY TG  VP    EKL++S Q    
Sbjct: 474 AMFSGTHVERDFVEAPSQMLENWVWEQEPLLRMSRHYRTGSAVPRELLEKLIESRQANTG 533
Query: 580 MFAATELQRQIFYALVDQTLFGERLGQTRDTSSIVADMKRQHTSWNHVEGTHWHIRFSHF 639
           +F      RQI  A VDQ L  +      D +   A + ++        GT+    F H 
Sbjct: 534 LFNL----RQIVLAKVDQALHTQ---TDADPAEEYARLCQEILGVPATPGTNMPATFGHL 586
Query: 640 I-NYGAGYYSYLYAKCFAATIWQ-KLCQEDPLSLTTGTTLRTKILQHGGAKEPADMLNDL 697
              Y A YY YL+++ ++  ++  +  QE  L+   G   R+ IL+ GG+++ + ML   
Sbjct: 587 AGGYDAQYYGYLWSEVYSMDMFHTRFKQEGVLNSKVGMDYRSCILRPGGSEDASAMLRRF 646
Query: 698 VG 699
           +G
Sbjct: 647 LG 648
>pdb|2O36|A Chain A, Crystal Structure Of Engineered Thimet Oligopeptidase With Neurolysin Specificity In Neurotensin Cleavage Site Length = 674 Back     alignment and structure
>pdb|2O3E|A Chain A, Crystal Structure Of Engineered Neurolysin With Thimet Oligopeptidase Specificity For Neurotensin Cleavage Site Length = 678 Back     alignment and structure
>pdb|1I1I|P Chain P, Neurolysin (Endopeptidase 24.16) Crystal Structure Length = 681 Back     alignment and structure
>pdb|1Y79|1 Chain 1, Crystal Structure Of The E.Coli Dipeptidyl Carboxypeptidase Dcp In Complex With A Peptidic Inhibitor Length = 680 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query733
2o36_A674 ThiMet oligopeptidase; thermolysin-like domain, su 1e-139
2o3e_A678 Neurolysin; thermolysin-like domain, substrate-bin 1e-139
1y79_1680 Peptidyl-dipeptidase DCP; hinge bending, carboxype 1e-106
3ahn_A564 Oligopeptidase, PZ peptidase A; hydrolase, hydrola 1e-15
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-15
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-07
3sks_A567 Putative oligoendopeptidase F; structural genomics 2e-14
3ce2_A618 Putative peptidase; structural genomics, unknown f 9e-08
2qr4_A587 Peptidase M3B, oligoendopeptidase F; structural ge 2e-07
3c3y_A237 Pfomt, O-methyltransferase; plant secondary metabo 4e-04
>2o36_A ThiMet oligopeptidase; thermolysin-like domain, substrate-binding channel, hydrolase; 1.95A {Homo sapiens} PDB: 1s4b_P Length = 674 Back     alignment and structure
 Score =  425 bits (1094), Expect = e-139
 Identities = 162/656 (24%), Positives = 305/656 (46%), Gaps = 38/656 (5%)

Query: 54  FDHLKSPNGFQRFVDDAIERSSELVNYI----SEMPSSVEIIRAMDEISDAVCSVVDSAE 109
           +D   S    +    + IE++  + + +     E  S    ++A+ ++        +  +
Sbjct: 11  WDL--SAQQIEERTRELIEQTKRVYDQVGTQEFEDVSYESTLKALADVEVTYTVQRNILD 68

Query: 110 LCRQTHPDREFVEEASKASMRISEYLHYLNTNHTLYDAVK--KAELDGHLLSKEAHRAAN 167
             +   P ++    +++A  ++SE+   ++    +Y  +   + ++    L  EA R   
Sbjct: 69  FPQHVSPSKDIRTASTEADKKLSEFDVEMSMREDVYQRIVWLQEKVQKDSLRPEAARYLE 128

Query: 168 HLRIDFEKGGIHLCADKLDRVNQLNMDIFQLCREFNQNIINDPGHVDIFPESRIPKHIHH 227
            L     + G+HL  +  + + ++   +  LC +FN+N+  D         + +P  +  
Sbjct: 129 RLIKLGRRNGLHLPRETQENIKRIKKKLSLLCIDFNKNLNED--------TTFLPFTLQE 180

Query: 228 LLKPICRLTSGPSRESLISWDNKKEKGFRITTDSRILQSILQWTSDDEVRKMVYIQGHS- 286
           L         G   + L S +  ++   ++T        +L+     E R+ V    +S 
Sbjct: 181 L--------GGLPEDFLNSLEKMEDGKLKVTLKYPHYFPLLKKCHVPETRRKVEEAFNSR 232

Query: 287 VPQANHEVLHELIAARNELAQIMGYRSYAEFIVMPNMASSPEVVKSFLLEMSKMIKPKAD 346
             + N  +L EL+  R + ++++G+ ++A++++  NMA + + V +FL E+++ +KP  +
Sbjct: 233 CKEENSAILKELVTLRAQKSRLLGFHTHADYVLEMNMAKTSQTVATFLDELAQKLKPLGE 292

Query: 347 EEFEAIKNFKRKSCGQKYV----HLEPWDEAYYTAMMKSSAYNLDACVVASYFPLGQCIE 402
           +E   I   KR  C ++ +     +  WD  YY   ++ + Y +D  ++  YFP+     
Sbjct: 293 QERAVILELKRAECERRGLPFDGRIRAWDMRYYMNQVEETRYCVDQNLLKEYFPVQVVTH 352

Query: 403 GLKMLAESLFGVTFHSVPLAPGESWHPDVLKLSLQHPEEGE-MGYLYLDLYSRAGKYTGC 461
           GL  + + L G+ FH    A   +WH DV   + +    GE +G  YLDLY R GKY   
Sbjct: 353 GLLGIYQELLGLAFHHEEGAS--AWHEDVRLYTARDAASGEVVGKFYLDLYPREGKYGHA 410

Query: 462 ANFAIKGGRRLSETEYQLPVVALICNF-PGSHNLSVRLNHHEVETLFHEFGHALHSLLSR 520
           A F ++ G    +   Q+ + A++ NF   + +    L H EV T FHEFGH +H L S+
Sbjct: 411 ACFGLQPGCLRQDGSRQIAIAAMVANFTKPTADAPSLLQHDEVRTYFHEFGHVMHQLCSQ 470

Query: 521 TDYQHFSGTRVALDFAETPSNLFEYYAWDYRVLRRFAKHYLTGEIVPEKLVKSMQGARDM 580
            ++  FSGT V  DF E PS + E + W+   L R ++HY TG  VP +L++ +  +R  
Sbjct: 471 AEFAMFSGTHVETDFVEAPSQMLENWVWEQEPLLRMSRHYRTGSAVPRELLEKLIESRQA 530

Query: 581 FAATELQRQIFYALVDQTLFGERLGQTRDTSSIVADMKRQHTSWNHVEGTHWHIRFSH-F 639
                  RQI  A VDQ L  +      D +   A + ++        GT+    F H  
Sbjct: 531 NTGLFNLRQIVLAKVDQALHTQ---TDADPAEEYARLCQEILGVPATPGTNMPATFGHLA 587

Query: 640 INYGAGYYSYLYAKCFAATIWQKLCQEDP-LSLTTGTTLRTKILQHGGAKEPADML 694
             Y A YY YL+++ ++  ++    +++  L+   G   R+ IL+ GG+++ + ML
Sbjct: 588 GGYDAQYYGYLWSEVYSMDMFHTRFKQEGVLNSKVGMDYRSCILRPGGSEDASAML 643
>2o3e_A Neurolysin; thermolysin-like domain, substrate-binding channel, hydrolase; 2.20A {Rattus norvegicus} PDB: 1i1i_P Length = 678 Back     alignment and structure
>1y79_1 Peptidyl-dipeptidase DCP; hinge bending, carboxypeptidase, neurolysin, ACE, hydrolase; HET: TRP; 2.00A {Escherichia coli} Length = 680 Back     alignment and structure
>3ahn_A Oligopeptidase, PZ peptidase A; hydrolase, hydrolase-hydrolase inhibitor complex; HET: 3A1; 1.80A {Geobacillus SP} PDB: 3ahm_A* 3aho_A* 2h1n_A 2h1j_A Length = 564 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3sks_A Putative oligoendopeptidase F; structural genomics, center for structural genomics of infec diseases, csgid, protease, hydrolase; 2.05A {Bacillus anthracis} Length = 567 Back     alignment and structure
>3ce2_A Putative peptidase; structural genomics, unknown function, P protein structure initiative; 2.60A {Chlamydophila abortus} Length = 618 Back     alignment and structure
>2qr4_A Peptidase M3B, oligoendopeptidase F; structural genomics, PSI-2, protein ST initiative; 2.50A {Enterococcus faecium} Length = 587 Back     alignment and structure
>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} Length = 237 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query733
1y79_1680 Peptidyl-dipeptidase DCP; hinge bending, carboxype 100.0
2o3e_A678 Neurolysin; thermolysin-like domain, substrate-bin 100.0
2o36_A674 ThiMet oligopeptidase; thermolysin-like domain, su 100.0
3sks_A567 Putative oligoendopeptidase F; structural genomics 100.0
3ahn_A564 Oligopeptidase, PZ peptidase A; hydrolase, hydrola 100.0
3ce2_A618 Putative peptidase; structural genomics, unknown f 100.0
2qr4_A587 Peptidase M3B, oligoendopeptidase F; structural ge 100.0
1r42_A615 Angiotensin I converting enzyme 2; zinc metallopep 100.0
1uze_A589 Angiotensin converting enzyme; metalloprotease, in 100.0
3nxq_A629 Angiotensin-converting enzyme; dicarboxy zinc meta 99.97
2x96_A598 Angiotensin converting enzyme; hydrolase, ACE inhi 99.93
1ka2_A499 M32 carboxypeptidase; hexxh motif, M32 family, met 99.91
3hq2_A501 Bacillus subtilis M32 carboxypeptidase; hydrolase, 99.87
3hoa_A509 Thermostable carboxypeptidase 1; proline-rich loop 99.82
3dwc_A505 TCMCP-1, metallocarboxypeptidase; cowrin family of 99.81
>1y79_1 Peptidyl-dipeptidase DCP; hinge bending, carboxypeptidase, neurolysin, ACE, hydrolase; HET: TRP; 2.00A {Escherichia coli} Back     alignment and structure
Probab=100.00  E-value=2.2e-121  Score=1072.24  Aligned_cols=644  Identities=23%  Similarity=0.361  Sum_probs=595.0

Q ss_pred             CCCCCCCCCCCcCChHHHHHHHHHHHHHHHHHHHcC---CChHHHHHHHHHhhHHHhhhhchhhhhhccCCchHHHHHHH
Q 037955           49 TGLYGFDHLKSPNGFQRFVDDAIERSSELVNYISEM---PSSVEIIRAMDEISDAVCSVVDSAELCRQTHPDREFVEEAS  125 (733)
Q Consensus        49 ~gl~~~~~l~~p~~~~~~~~~~i~~~~~~i~~i~~~---~~~~~~v~~ld~~~~~l~~~~~~~~~~~~~~~d~e~r~aa~  125 (733)
                      .|+|+|+.+ +|++|.++++++++++++.|++|.+.   ++++|+|.+++++++.||++++++++++++++++++|++++
T Consensus        14 ~~~p~f~~i-~~~~~~~a~~~~~~~~~~~i~~i~~~~~~~t~~n~i~~le~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~   92 (680)
T 1y79_1           14 YLAPHFDQI-ANHHYRPAFDEGMQQKRAEIAAIALNPQMPDFNNTILALEQSGELLTRVTSVFFAMTAAHTNDELQRLDE   92 (680)
T ss_dssp             GGCCCTTTC-CGGGHHHHHHHHHHHHHHHHHHHTTSSSSCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHSCCHHHHHHHH
T ss_pred             CCCCCcCCC-CHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence            478889888 79999999999999999999999764   68999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhCCHHHHHHHHHHhh--cCCCCCHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 037955          126 KASMRISEYLHYLNTNHTLYDAVKKAEL--DGHLLSKEAHRAANHLRIDFEKGGIHLCADKLDRVNQLNMDIFQLCREFN  203 (733)
Q Consensus       126 ~~~~~l~~~~~~l~~~~~Ly~~l~~~~~--~~~~L~~e~~r~l~~~~~~f~~~G~~L~~~~r~~~~~l~~~i~~L~~~F~  203 (733)
                      ++.++++++.+++++|++||++++++..  ....|++|++|+++..+++|+++|++|++++|+++.+|+.++++|+++|+
T Consensus        93 ~~~~~l~~~~~~l~~~~~l~~~~~~~~~~~~~~~L~~e~~r~~~~~l~~f~~~G~~L~~~~~~~~~~l~~~l~~L~~~f~  172 (680)
T 1y79_1           93 QFSAELAELANDIYLNGELFARVDAVWQRRESLGLDSESIRLVEVIHQRFVLAGAKLAQADKAKLKVLNTEAATLTSQFN  172 (680)
T ss_dssp             HHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTSCCCHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHhChhhccCCHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999832  23469999999999999999999999999999999999999999999999


Q ss_pred             hhcccCCC--Cc---ccccCCCCCHHHHHhhccccccCCCCCcchhhhhcccCCCC-EEEecCCCcHHHHhhhCCCHHHH
Q 037955          204 QNIINDPG--HV---DIFPESRIPKHIHHLLKPICRLTSGPSRESLISWDNKKEKG-FRITTDSRILQSILQWTSDDEVR  277 (733)
Q Consensus       204 ~ni~~~~~--~v---~~~~l~glp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~i~l~~~~~~~vL~~~~d~~~R  277 (733)
                      +|+.+++.  .+   +..+|+|||+++++.++..+              ...+.+| +.++++.+.+.++|++++|+++|
T Consensus       173 ~n~~~~~~~~~~~~~~~~~L~Glp~~~~~~~~~~a--------------~~~g~~G~~~~~l~~~~~~~~l~~~~dr~~R  238 (680)
T 1y79_1          173 QRLLAANKSGGLVVNDIAQLAGMSEQEIALAAEAA--------------REKGLDNKWLIPLLNTTQQPALAEMRDRATR  238 (680)
T ss_dssp             HHHHHHHHTCSEEESCGGGGTTSCHHHHHHHHHHH--------------HHTTCTTCEEECCCSSSSCGGGGTCCCHHHH
T ss_pred             HHHHHhhhcceEEecCHHHhcCCCHHHHHHHHHHH--------------HhcCCCCcEEEecchhhHHHHHhhCcCHHHH
Confidence            99997662  12   33579999999999987642              2223356 99999999999999999999999


Q ss_pred             HHHHHHhccCC-----cchHHHHHHHHHHHHHHHHHcCCCCHHHHHhccCcCCCHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 037955          278 KMVYIQGHSVP-----QANHEVLHELIAARNELAQIMGYRSYAEFIVMPNMASSPEVVKSFLLEMSKMIKPKADEEFEAI  352 (733)
Q Consensus       278 k~~~~a~~~~~-----~~n~~~l~~ll~lR~e~A~llGy~sya~~~l~~~ma~spe~V~~fL~~l~~~~~p~~~~e~~~L  352 (733)
                      |++|+|+.+..     .+|..+|.+|+++|+++|++|||+||+++++.++|++||++|.+||++|.+.++|.+++|++.|
T Consensus       239 k~~~~a~~~~~~~~~~~~n~~~l~~i~~lR~~~A~llGy~s~a~~~l~~~ma~t~e~V~~fL~~l~~~~~p~a~~e~~~l  318 (680)
T 1y79_1          239 EKLFIAGWTRAEKNDANDTRAIIQRLVEIRAQQATLLGFPHYAAWKIADQMAKTPEAALNFMREIVPAARQRASDELASI  318 (680)
T ss_dssp             HHHHHHHHTTTCSSSTTCCHHHHHHHHHHHHHHHHHTTCSSHHHHHHTTSTTCSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999998754     5799999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCCCCCCCcCCHHHHHHHhhhhccCCChhhccCCCCHHHHH-HHHHHHHHHhhCceeEeecCCCCCcccccc
Q 037955          353 KNFKRKSCGQKYVHLEPWDEAYYTAMMKSSAYNLDACVVASYFPLGQCI-EGLKMLAESLFGVTFHSVPLAPGESWHPDV  431 (733)
Q Consensus       353 ~~~~~~~~g~~~~~l~pWD~~y~~~~~~~~~~~~d~~~~~~yfpl~~vl-~gl~~l~~~lfgi~~~~~~~~~~~~wh~dV  431 (733)
                      ++++++.+|  .++|+|||+.||.++.++.++++|++++++|||++.|+ +|++.+++++||++|+++..  .++|||||
T Consensus       319 ~~~~~~~~g--~~~l~~wD~~yy~~~~~~~~~~~de~~~~~yF~l~~vl~~gl~~~~~~lfG~~~~~~~~--~~~whpdV  394 (680)
T 1y79_1          319 QAVIDKQQG--GFSAQPWDWAFYAEQVRREKFDLDEAQLKPYFELNTVLNEGVFWTANQLFGIKFVERFD--IPVYHPDV  394 (680)
T ss_dssp             HHHHHHTTC--CSCCCHHHHHHHHHHHHHHHHSCCGGGTGGGCBHHHHHHHTHHHHHHHHHCCEEEEESS--SCCSSTTC
T ss_pred             HHHHHHhcC--CCCCCHHHHHHHHHHHHHHhcCCCHHHhcccCCHHHHHHHHHHHHHHHhcCCeEEECCC--CccCCCcc
Confidence            999988877  46799999999999999999999999999999999999 99999999999999999874  47999999


Q ss_pred             ceeEEEcCCCCcccceeeecccCCCCccCcccccccCceecCCCCccccEEEEEccCCCCCCC-CCCcChhhHHHHHHHH
Q 037955          432 LKLSLQHPEEGEMGYLYLDLYSRAGKYTGCANFAIKGGRRLSETEYQLPVVALICNFPGSHNL-SVRLNHHEVETLFHEF  510 (733)
Q Consensus       432 ~~~~v~d~~~~~lg~~ylDl~~R~gK~~ga~~~~i~~~~~~~~g~~~~P~v~l~~Nf~~~~~~-~~lL~~~~v~TLfHEf  510 (733)
                      ++|+|++.+|+++|.+|+|+|+|+||++||||+++++++.. +|  +.|+++|+|||++|.++ |+||+++||.||||||
T Consensus       395 ~~~~v~~~~~~~~g~~ylD~~~R~gKr~Ga~~~~~~~~~~~-~~--~~Pv~~i~~Nf~~p~~~~p~LLt~~dV~TLfHE~  471 (680)
T 1y79_1          395 RVWEIFDHNGVGLALFYGDFFARDSKSGGAWMGNFVEQSTL-NK--THPVIYNVCNYQKPAAGEPALLLWDDVITLFHEF  471 (680)
T ss_dssp             EEEEEECTTSCEEEEEEEEEECCTTSCSSCEEEEEECCBTT-TT--BCCEEEEEEEECCCCTTSCCBCCHHHHHHHHHHH
T ss_pred             eEEEEEeCCCCEEeeEEEeecCCCCCCCCeeeccccccccC-CC--cCCeEEEeccCCCCCCCCCCcCCHHHHHHHHHHH
Confidence            99999998899999999999999999999999999887654 33  67999999999999865 4999999999999999


Q ss_pred             HHHHHHhhhcCCCCccCCCcccchhhhhhHHHHHHhhhcHHHHHHHHhcccCCCCChHHHHHHHHHhhhhhhHHHHHHHH
Q 037955          511 GHALHSLLSRTDYQHFSGTRVALDFAETPSNLFEYYAWDYRVLRRFAKHYLTGEIVPEKLVKSMQGARDMFAATELQRQI  590 (733)
Q Consensus       511 GHalH~lls~~~~~~~sgt~~~~D~~E~pS~~~E~~~~~~~~L~~~s~h~~tge~lp~~l~~~l~~~~~~~~~~~~~~ql  590 (733)
                      |||||++++++.|+.++|+++++||||+|||+||+|||+|++|..+++||+||+++|++++++|.++++++.++.+++|+
T Consensus       472 GHalH~~ls~~~~~~~sgt~~~~d~vE~pS~~~E~~~~~p~~L~~~~~h~~t~e~~p~~l~~~l~~~~~~~~~~~~~rq~  551 (680)
T 1y79_1          472 GHTLHGLFARQRYATLSGTNTPRDFVEFPSQINEHWATHPQVFARYARHYQSGAAMPDELQQKMRNASLFNKGYEMSELL  551 (680)
T ss_dssp             HHHHHHHTCCCSSGGGSTTCSCHHHHHHHHHHHHHGGGSHHHHHHHCBCTTTCCBCCHHHHHHHHHTTTTTHHHHHHHHH
T ss_pred             HHHHHHHHhcCCcccccCccccchhhhccchhhhhHhcCHHHHHHHHhhccCCCcCCHHHHHHHHHHHhhchHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhHHHhhcC-CCCCCCCHHHHHHHHHhhccCC-CCCCCCcccccccccc--cccccchhHHHHHHHHHHHHHHHHHc
Q 037955          591 FYALVDQTLFGE-RLGQTRDTSSIVADMKRQHTSW-NHVEGTHWHIRFSHFI--NYGAGYYSYLYAKCFAATIWQKLCQE  666 (733)
Q Consensus       591 ~~a~fD~~lh~~-~~~~~~~~~~l~~~l~~~~~~~-~~~~~~~~~~~f~Hl~--~Y~a~YYsYl~s~v~A~di~~~~~~~  666 (733)
                      .++.||+.+|.. .+.+..++.++|.++++++..+ +.++..+|+++|+|||  ||+++||+|+||+|+|+++|+.|.++
T Consensus       552 ~~a~fD~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~Hif~ggY~a~yYsY~~a~vla~~~~~~f~e~  631 (680)
T 1y79_1          552 SAALLDMRWHCLEENEAMQDVDDFELRALVAENMDLPAIPPRYRSSYFAHIFGGGYAAGYYAYLWTQMLADDGYQWFVEQ  631 (680)
T ss_dssp             HHHHHHHHHTTCCGGGCCCCHHHHHHHHHHHTTCCBTTBCCSSCGGGCHHHHTSSCTTTTHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcCCCCCcccCHHHHHHHHHHHhCCCCCCCCCCCccCcccceecCCcCCCcHhHHHHHHHHHHHHHHHHHc
Confidence            999999999984 2224568999999999999654 5556677889999999  79999999999999999999999888


Q ss_pred             CCCCHHHHHHHHHHHhcCCCCCCHHHHHHHhcCCCcccccCCCCCCChHHHHHHcCCC
Q 037955          667 DPLSLTTGTTLRTKILQHGGAKEPADMLNDLVGDGILRYCNGGIVPDITSFSDEVKLM  724 (733)
Q Consensus       667 ~~~~~~~G~~~r~~vL~~Ggs~~~~ell~~flGrd~~~~~~~g~~p~~~a~l~~~g~~  724 (733)
                      |++|+++|++||++||+.|||++|++++++|+||          +|++++|+++.||.
T Consensus       632 g~~~~~~g~~y~~~iL~~GGs~~~~el~~~f~G~----------dp~~~a~l~~~Gl~  679 (680)
T 1y79_1          632 GGLTRENGLRFREAILSRGNSEDLERLYRQWRGK----------APKIMPMLQHRGLN  679 (680)
T ss_dssp             TSSCHHHHHHHHHHTTTTTTSSCHHHHHHHHHSS----------CCCSHHHHHHTTCC
T ss_pred             CCCCHHHHHHHHHHHhhCCCCccHHHHHHHhcCC----------CCChhHHHHHCCCC
Confidence            8899999999998899999999999999999999          59999999999984
>2o3e_A Neurolysin; thermolysin-like domain, substrate-binding channel, hydrolase; 2.20A {Rattus norvegicus} PDB: 1i1i_P Back     alignment and structure
>2o36_A ThiMet oligopeptidase; thermolysin-like domain, substrate-binding channel, hydrolase; 1.95A {Homo sapiens} PDB: 1s4b_P Back     alignment and structure
>3sks_A Putative oligoendopeptidase F; structural genomics, center for structural genomics of infec diseases, csgid, protease, hydrolase; 2.05A {Bacillus anthracis} Back     alignment and structure
>3ahn_A Oligopeptidase, PZ peptidase A; hydrolase, hydrolase-hydrolase inhibitor complex; HET: 3A1; 1.80A {Geobacillus SP} PDB: 3ahm_A* 3aho_A* 2h1n_A 2h1j_A Back     alignment and structure
>3ce2_A Putative peptidase; structural genomics, unknown function, P protein structure initiative; 2.60A {Chlamydophila abortus} Back     alignment and structure
>2qr4_A Peptidase M3B, oligoendopeptidase F; structural genomics, PSI-2, protein ST initiative; 2.50A {Enterococcus faecium} Back     alignment and structure
>1r42_A Angiotensin I converting enzyme 2; zinc metallopeptidase domain, Na open conformation, chloride ION binding site; HET: NAG; 2.20A {Homo sapiens} SCOP: d.92.1.5 PDB: 1r4l_A* 3sci_A 3scj_A 2ajf_A* 3kbh_A* 3d0g_A* 3d0h_A* 3d0i_A* 3sck_A 3scl_A Back     alignment and structure
>1uze_A Angiotensin converting enzyme; metalloprotease, inhibitor, enalaprilat, zinc dependant peptidase, anti-hypertensive drug; HET: EAL; 1.82A {Homo sapiens} SCOP: d.92.1.5 PDB: 1o8a_A* 1o86_A* 1uzf_A* 2oc2_A* 2ydm_A* 2iux_A* 2iul_A* 2xy9_A* 3bkk_A* 3bkl_A* 3l3n_A* Back     alignment and structure
>3nxq_A Angiotensin-converting enzyme; dicarboxy zinc metallopeptidase, hydrolase, hydrolase-hydrol inhibitor complex; HET: RX4 NAG FUC BMA P6G PG4; 1.99A {Homo sapiens} PDB: 2xyd_A* 2c6n_A* 2c6f_A* Back     alignment and structure
>2x96_A Angiotensin converting enzyme; hydrolase, ACE inhibitor, zinc metallopeptidase; HET: RX3 EPE NAG BMA MAN; 1.85A {Drosophila melanogaster} PDB: 2x8z_A* 2x90_A* 2x91_A* 2x8y_A* 2x97_A* 2xhm_A* 3zqz_A* 2x94_A* 2x92_A* 2x93_A* 2x95_A* 1j36_A* 1j37_A* 1j38_A Back     alignment and structure
>1ka2_A M32 carboxypeptidase; hexxh motif, M32 family, metallopeptidase; 2.20A {Pyrococcus furiosus} SCOP: d.92.1.5 PDB: 1k9x_A 1ka4_A Back     alignment and structure
>3hq2_A Bacillus subtilis M32 carboxypeptidase; hydrolase, metal-binding, metalloprotease, protease, zinc; 2.90A {Bacillus subtilis} SCOP: d.92.1.0 Back     alignment and structure
>3hoa_A Thermostable carboxypeptidase 1; proline-rich loop, hydrolase; 2.10A {Thermus thermophilus HB27} SCOP: d.92.1.0 PDB: 1wgz_A Back     alignment and structure
>3dwc_A TCMCP-1, metallocarboxypeptidase; cowrin family of metallocarboxypept carboxypeptidase, hydrolase; 2.10A {Trypanosoma cruzi} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 733
d1s4bp_654 d.92.1.5 (P:) Neurolysin (endopeptidase 24.16, thi 1e-126
d1i1ip_665 d.92.1.5 (P:) Neurolysin (endopeptidase 24.16, thi 1e-119
d2ajfa1597 d.92.1.5 (A:19-615) Angiotensin converting enzyme 9e-26
d1j36a_598 d.92.1.5 (A:) Angiotensin converting enzyme, ACE { 8e-17
d1uzea_579 d.92.1.5 (A:) Angiotensin converting enzyme, ACE { 2e-16
>d1s4bp_ d.92.1.5 (P:) Neurolysin (endopeptidase 24.16, thimet oligopeptidase) {Human (Homo sapiens) [TaxId: 9606]} Length = 654 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Neurolysin-like
domain: Neurolysin (endopeptidase 24.16, thimet oligopeptidase)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  389 bits (999), Expect = e-126
 Identities = 159/656 (24%), Positives = 299/656 (45%), Gaps = 36/656 (5%)

Query: 59  SPNGFQRFVDDAIERSSELVNYI----SEMPSSVEIIRAMDEISDAVCSVVDSAELCRQT 114
           S    +    + IE++  + + +     E  S    ++A+ ++        +  +  +  
Sbjct: 6   SAQQIEERTRELIEQTKRVYDQVGTQEFEDVSYESTLKALADVEVTYTVQRNILDFPQHV 65

Query: 115 HPDREFVEEASKASMRISEYLHYLNTNHTLYDAVKK--AELDGHLLSKEAHRAANHLRID 172
            P ++    +++A  ++SE+   ++    +Y  +     ++    L  EA R    L   
Sbjct: 66  SPSKDIRTASTEADKKLSEFDVEMSMREDVYQRIVWLQEKVQKDSLRPEAARYLERLIKL 125

Query: 173 FEKGGIHLCADKLDRVNQLNMDIFQLCREFNQNIINDPGHVDIFPESRIPKHIHHLLKPI 232
             + G+HL  +  + + ++   +  LC +FN+N+  D   +    +              
Sbjct: 126 GRRNGLHLPRETQENIKRIKKKLSLLCIDFNKNLNEDTTFLPFTLQEL------------ 173

Query: 233 CRLTSGPSRESLISWDNKKEKGFRITTDSRILQSILQWTSDDEVRKMVYI-QGHSVPQAN 291
                G   + L S +  ++   ++T        +L+     E R+ V         + N
Sbjct: 174 ----GGLPEDFLNSLEKMEDGKLKVTLKYPHYFPLLKKCHVPETRRKVEEAFNSRCKEEN 229

Query: 292 HEVLHELIAARNELAQIMGYRSYAEFIVMPNMASSPEVVKSFLLEMSKMIKPKADEEFEA 351
             +L EL+  R + ++++G+ ++A++++  NMA + + V +FL E+++ +KP  ++E   
Sbjct: 230 SAILKELVTLRAQKSRLLGFHTHADYVLEMNMAKTSQTVATFLDELAQKLKPLGEQERAV 289

Query: 352 IKNFKRKSCGQKYV----HLEPWDEAYYTAMMKSSAYNLDACVVASYFPLGQCIEGLKML 407
           I   KR  C ++ +     +  WD  YY   ++ + Y +D  ++  YFP+     GL  +
Sbjct: 290 ILELKRAECERRGLPFDGRIRAWDMRYYMNQVEETRYCVDQNLLKEYFPVQVVTHGLLGI 349

Query: 408 AESLFGVTFHSVPLAPGESWHPDVLKLSLQHPEEGE-MGYLYLDLYSRAGKYTGCANFAI 466
            + L G+ FH        +WH DV   + +    GE +G  YLDLY R GKY   A F +
Sbjct: 350 YQELLGLAFH--HEEGASAWHEDVRLYTARDAASGEVVGKFYLDLYPREGKYGHAACFGL 407

Query: 467 KGGRRLSETEYQLPVVALICNF-PGSHNLSVRLNHHEVETLFHEFGHALHSLLSRTDYQH 525
           + G    +   Q+ + A++ NF   + +    L H EVET FHEFGH +H L S+ ++  
Sbjct: 408 QPGCLRQDGSRQIAIAAMVANFTKPTADAPSLLQHDEVETYFHEFGHVMHQLCSQAEFAM 467

Query: 526 FSGTRVALDFAETPSNLFEYYAWDYRVLRRFAKHYLTGEIVPEKLVKSMQGARDMFAATE 585
           FSGT V  DF E PS + E + W+   L R ++HY TG  VP +L++ +  +R       
Sbjct: 468 FSGTHVERDFVEAPSQMLENWVWEQEPLLRMSRHYRTGSAVPRELLEKLIESRQANTGLF 527

Query: 586 LQRQIFYALVDQTLFGERLGQTRDTSSIVADMKRQHTSWNHVEGTHWHIRFSH-FINYGA 644
             RQI  A VDQ L  +      D +   A + ++        GT+    F H    Y A
Sbjct: 528 NLRQIVLAKVDQALHTQTDA---DPAEEYARLCQEILGVPATPGTNMPATFGHLAGGYDA 584

Query: 645 GYYSYLYAKCFAATIWQKLCQED-PLSLTTGTTLRTKILQHGGAKEPADMLNDLVG 699
            YY YL+++ ++  ++    +++  L+   G   R+ IL+ GG+++ + ML   +G
Sbjct: 585 QYYGYLWSEVYSMDMFHTRFKQEGVLNSKVGMDYRSCILRPGGSEDASAMLRRFLG 640
>d1i1ip_ d.92.1.5 (P:) Neurolysin (endopeptidase 24.16, thimet oligopeptidase) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 665 Back     information, alignment and structure
>d2ajfa1 d.92.1.5 (A:19-615) Angiotensin converting enzyme 2, ACE2 {Human (Homo sapiens) [TaxId: 9606]} Length = 597 Back     information, alignment and structure
>d1j36a_ d.92.1.5 (A:) Angiotensin converting enzyme, ACE {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 598 Back     information, alignment and structure
>d1uzea_ d.92.1.5 (A:) Angiotensin converting enzyme, ACE {Human (Homo sapiens) [TaxId: 9606]} Length = 579 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query733
d1i1ip_665 Neurolysin (endopeptidase 24.16, thimet oligopepti 100.0
d1s4bp_654 Neurolysin (endopeptidase 24.16, thimet oligopepti 100.0
d2ajfa1597 Angiotensin converting enzyme 2, ACE2 {Human (Homo 100.0
d1uzea_579 Angiotensin converting enzyme, ACE {Human (Homo sa 100.0
d1j36a_598 Angiotensin converting enzyme, ACE {Fruit fly (Dro 100.0
d1k9xa_497 Thermostable carboxypeptidase 1 {Archaeon Pyrococc 99.83
d1kapp2246 Metalloprotease {Pseudomonas aeruginosa [TaxId: 28 90.3
d1g9ka2242 Metalloprotease {Pseudomonas sp., tac ii 18 [TaxId 89.81
d1hfca_157 Fibroblast collagenase (MMP-1) {Human (Homo sapien 89.36
d1j7na2223 Anthrax toxin lethal factor, N- and C-terminal dom 88.26
d1y93a1158 Macrophage elastase (MMP-12) {Human (Homo sapiens) 85.29
d1hv5a_162 Stromelysin-3 (MMP-11) {Mouse (Mus musculus) [TaxI 85.11
d1k7ia2241 Metalloprotease {Erwinia chrysanthemi [TaxId: 556] 84.86
d1rm8a_169 Matrix metalloproteinase-16 (MMP-16) {Human (Homo 84.49
d1hy7a_168 Stromelysin-1 (MMP-3) {Human (Homo sapiens), fibro 84.37
d1i76a_163 Neutrophil collagenase (MMP-8) {Human (Homo sapien 83.91
d1qiba_161 Gelatinase A {Human (Homo sapiens) [TaxId: 9606]} 83.31
d1sata2243 Metalloprotease {Serratia marcescens [TaxId: 615]} 83.2
d2ovxa1159 Gelatinase B (MMP-9) {Human (Homo sapiens) [TaxId: 82.82
d1mmqa_166 Matrilysin (MMP-7) {Human (Homo sapiens) [TaxId: 9 82.68
>d1i1ip_ d.92.1.5 (P:) Neurolysin (endopeptidase 24.16, thimet oligopeptidase) {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Neurolysin-like
domain: Neurolysin (endopeptidase 24.16, thimet oligopeptidase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=8.7e-137  Score=1193.08  Aligned_cols=642  Identities=25%  Similarity=0.451  Sum_probs=600.3

Q ss_pred             CCCCCCCCCCCCCcCChHHHHHHHHHHHHHHHHHHHcC----CChHHHHHHHHHhhHHHhhhhchhhhhhccCCchHHHH
Q 037955           47 VPTGLYGFDHLKSPNGFQRFVDDAIERSSELVNYISEM----PSSVEIIRAMDEISDAVCSVVDSAELCRQTHPDREFVE  122 (733)
Q Consensus        47 ~~~gl~~~~~l~~p~~~~~~~~~~i~~~~~~i~~i~~~----~~~~~~v~~ld~~~~~l~~~~~~~~~~~~~~~d~e~r~  122 (733)
                      +..+++.+. + ||++|.++++.+|++|++.|++|.+.    +||+|+|.+||++++.||.++++++++++||||+++|+
T Consensus         7 ~~~~~~~w~-~-tPe~i~~~~~~~i~~~~~~id~I~~~~~~~~Tfen~i~~ld~~~~~l~~~~~~~~~l~~v~~d~~~r~   84 (665)
T d1i1ip_           7 AGRNVLRWD-L-SPEQIKTRTEQLIAQTKQVYDTVGTIALKEVTYENCLQVLADIEVTYIVERTMLDFPQHVSSDREVRA   84 (665)
T ss_dssp             TTTCCCCSC-C-CHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCCTTTTHHHHHHHHHHHHHHHHHHHSHHHHCSCHHHHH
T ss_pred             CCCCcCCCc-C-CHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence            334677786 6 89999999999999999999999663    58999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhCCHHHHHHHHHHh--hcCCCCCHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHH
Q 037955          123 EASKASMRISEYLHYLNTNHTLYDAVKKAE--LDGHLLSKEAHRAANHLRIDFEKGGIHLCADKLDRVNQLNMDIFQLCR  200 (733)
Q Consensus       123 aa~~~~~~l~~~~~~l~~~~~Ly~~l~~~~--~~~~~L~~e~~r~l~~~~~~f~~~G~~L~~~~r~~~~~l~~~i~~L~~  200 (733)
                      +++++.+++++|.+++++|++||++++++.  .+...|++|++|++++++++|+++|++|++++|+++++|+++|+.|+.
T Consensus        85 a~~~~~~~l~~~~~~i~~n~~Ly~~l~~l~~~~~~~~L~~E~~rlle~~l~df~~sG~~L~~~~r~r~~~l~~els~l~~  164 (665)
T d1i1ip_          85 ASTEADKKLSRFDIEMSMREDVFQRIVHLQETCDLEKIKPEARRYLEKSIKMGKRNGLHLSEHIRNEIKSMKKRMSELCI  164 (665)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSCTTSSCHHHHHHHHHHHHHHHHTTTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhcCHHHHHHHHHHHcCcccccCCHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999993  245679999999999999999999999999999999999999999999


Q ss_pred             HHHhhcccCCCCc--ccccCCCCCHHHHHhhccccccCCCCCcchhhhhcccCCCCEEEecCCCcHHHHhhhCCCHHHHH
Q 037955          201 EFNQNIINDPGHV--DIFPESRIPKHIHHLLKPICRLTSGPSRESLISWDNKKEKGFRITTDSRILQSILQWTSDDEVRK  278 (733)
Q Consensus       201 ~F~~ni~~~~~~v--~~~~l~glp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~l~~~~~~~vL~~~~d~~~Rk  278 (733)
                      +|++|+.+++..+  +..+|+|||+++++.++..                  ..++|.||++++++.+||++|+|+++||
T Consensus       165 ~F~~nl~~~~~~~~~~~~~L~Glp~~~~~~~~~~------------------~~~~~~itl~~p~~~~~l~~~~~~~lR~  226 (665)
T d1i1ip_         165 DFNKNLNEDDTSLVFSKAELGALPDDFIDSLEKT------------------DEDKYKVTLKYPHYFPVMKKCCVPETRR  226 (665)
T ss_dssp             HHHHHHHHCCCEEEECTGGGTTCCHHHHHTSCBC------------------SSSCEEEESSHHHHHHHHHHCCCHHHHH
T ss_pred             HHHHHhhhhcccccccHhhhcCCCHHHHHHHHHh------------------cCCCceeeccccccchhhhhcCcHHHHH
Confidence            9999999888755  3357999999999887642                  1246999999999999999999999999


Q ss_pred             HHHHHhccCC-cchHHHHHHHHHHHHHHHHHcCCCCHHHHHhccCcCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 037955          279 MVYIQGHSVP-QANHEVLHELIAARNELAQIMGYRSYAEFIVMPNMASSPEVVKSFLLEMSKMIKPKADEEFEAIKNFKR  357 (733)
Q Consensus       279 ~~~~a~~~~~-~~n~~~l~~ll~lR~e~A~llGy~sya~~~l~~~ma~spe~V~~fL~~l~~~~~p~~~~e~~~L~~~~~  357 (733)
                      ++|.|+.+.. .+|.++|.+|+++|+|+|++|||+|||+|+|+++||+||++|.+||++|.++++|.+++|++.|.++++
T Consensus       227 ~~~~a~~~r~~~~N~~~l~~il~lR~e~A~LLGf~s~A~~~L~~kMA~spe~V~~FL~~L~~~~~p~a~~E~~~L~~~~~  306 (665)
T d1i1ip_         227 KMEMAFHTRCKQENTAILQQLLPLRAQVAKLLGYNTHADFVLELNTAKSTSRVAAFLDDLSQKLKPLGEAEREFILSLKK  306 (665)
T ss_dssp             HHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHTCSSHHHHHHTTSTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhccccchhHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhhhcCcHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence            9999998655 589999999999999999999999999999999999999999999999999999999999999999987


Q ss_pred             HhcC----CCCCCCCcCCHHHHHHHhhhhccCCChhhccCCCCHHHHHHHHHHHHHHhhCceeEeecCCCCCccccccce
Q 037955          358 KSCG----QKYVHLEPWDEAYYTAMMKSSAYNLDACVVASYFPLGQCIEGLKMLAESLFGVTFHSVPLAPGESWHPDVLK  433 (733)
Q Consensus       358 ~~~g----~~~~~l~pWD~~y~~~~~~~~~~~~d~~~~~~yfpl~~vl~gl~~l~~~lfgi~~~~~~~~~~~~wh~dV~~  433 (733)
                      +..+    ...++|+|||+.||+++++++++++|++++++|||++.|++||+.++++||||+|++++.  +++|||||++
T Consensus       307 ~~~~~~~~~~~~~l~pWD~~Yy~~k~r~~~~~~d~~~l~~YFpl~~vl~gl~~l~~~Lfgi~~~~~~~--~~~wh~dV~~  384 (665)
T d1i1ip_         307 KECEERGFEYDGKINAWDLHYYMTQTEELKYSVDQESLKEYFPIEVVTEGLLSIYQELLGLSFEQVPD--AHVWNKSVSL  384 (665)
T ss_dssp             HHHHTTTCCCCSSCCHHHHHHHHHHHHHHHSCCCHHHHGGGCBHHHHHHHHHHHHHHHHTEEEEECTT--CCCSSTTCEE
T ss_pred             HhhhhcCCCcccccCcccHHHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHHhheeeeeccc--CCCccccceE
Confidence            6432    123579999999999999999999999999999999999999999999999999999874  5799999999


Q ss_pred             eEEEcC-CCCcccceeeecccCCCCccCcccccccCceecCCCCccccEEEEEccCCCCCCC-CCCcChhhHHHHHHHHH
Q 037955          434 LSLQHP-EEGEMGYLYLDLYSRAGKYTGCANFAIKGGRRLSETEYQLPVVALICNFPGSHNL-SVRLNHHEVETLFHEFG  511 (733)
Q Consensus       434 ~~v~d~-~~~~lg~~ylDl~~R~gK~~ga~~~~i~~~~~~~~g~~~~P~v~l~~Nf~~~~~~-~~lL~~~~v~TLfHEfG  511 (733)
                      |+|+|+ +|+++|++|+|+|+|+||++||||+++|+++...+|++|.|+++++|||++|.++ |+||+|++|+|||||||
T Consensus       385 ~~v~d~~~~~~lG~~YlDl~~R~~K~~~a~~~~~~~~~~~~~~~~q~P~~~lv~Nf~~p~~~~p~lls~~ev~TLFHEfG  464 (665)
T d1i1ip_         385 YTVKDKATGEVLGQFYLDLYPREGKYNHAACFGLQPGCLLPDGSRMMSVAALVVNFSQPVAGRPSLLRHDEVRTYFHEFG  464 (665)
T ss_dssp             EEEEETTTCCEEEEEEEECSCCTTSCCSCEEEEEECCCBCTTSCBCCEEEEEECCCCCCCTTSCCBCCHHHHHHHHHHHH
T ss_pred             EEEEeccccceeeeEEEecccCccccCCCeEeeeccCcccccccccceeEEEeeeccCCCCCCCCccchhhHhhhHHHHH
Confidence            999985 5779999999999999999999999999999989999999999999999999865 49999999999999999


Q ss_pred             HHHHHhhhcCCCCccCCCcccchhhhhhHHHHHHhhhcHHHHHHHHhcccCCCCChHHHHHHHHHhhhhhhHHHHHHHHH
Q 037955          512 HALHSLLSRTDYQHFSGTRVALDFAETPSNLFEYYAWDYRVLRRFAKHYLTGEIVPEKLVKSMQGARDMFAATELQRQIF  591 (733)
Q Consensus       512 HalH~lls~~~~~~~sgt~~~~D~~E~pS~~~E~~~~~~~~L~~~s~h~~tge~lp~~l~~~l~~~~~~~~~~~~~~ql~  591 (733)
                      ||||++|++++|++++||+|++||||+|||+||+|||+|++|+.||+||+||+|||+++++++.+++++++|+.+++|+.
T Consensus       465 HalH~lls~~~y~~lsGt~v~~DfvE~pSql~E~~~~~~~vL~~~a~h~~tge~lp~~l~~~~~~~~~~~~~~~~~~ql~  544 (665)
T d1i1ip_         465 HVMHQICAQTDFARFSGTNVETDFVEVPSQMLENWVWDVDSLRKLSKHYKDGHPITDELLEKLVASRLVNTGLLTLRQIV  544 (665)
T ss_dssp             HHHHHHHCCCSSGGGSTTCSCTTTTHHHHHHHHGGGGCHHHHHHHCCCTTTCCCCCHHHHHHHHHTTTTTHHHHHHHHHH
T ss_pred             HHHHHhhccccccccccccchhhhhhhhHHHHHHhcCCHHHHHhhhccccCCccCCHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhHHHhhcCCCCCCCCHHHHHHHHHhhccCCCCCCCCcccccccccc-cccccchhHHHHHHHHHHHHHHHH-HcCCC
Q 037955          592 YALVDQTLFGERLGQTRDTSSIVADMKRQHTSWNHVEGTHWHIRFSHFI-NYGAGYYSYLYAKCFAATIWQKLC-QEDPL  669 (733)
Q Consensus       592 ~a~fD~~lh~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~f~Hl~-~Y~a~YYsYl~s~v~A~di~~~~~-~~~~~  669 (733)
                      +|+|||++|+..+   .+..+.|.++++++.+++..++++|+++|+||+ ||+|+||||+||+|+|+|+|+.+| ++|.+
T Consensus       545 ~a~~D~~lH~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~Hl~~gY~A~YYsYlws~vlaad~~~~~f~~~~~~  621 (665)
T d1i1ip_         545 LSKVDQSLHTNAT---LDAASEYAKYCTEILGVAATPGTNMPATFGHLAGGYDGQYYGYLWSEVFSMDMFHSCFKKEGIM  621 (665)
T ss_dssp             HHHHHHHTTTCSS---CCHHHHHHHHHHHHTSSCCCTTCCGGGGCTTTSSSCTTCTTHHHHHHHHHHHHHHHTHHHHCTT
T ss_pred             HHHHHHHHhCCCC---cchHHHHHHHHHHhcCCCCCCCCCCCCcCccccCCcccccHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            9999999998644   368899999999999998888999999999999 799999999999999999998755 45669


Q ss_pred             CHHHHHHHHHHHhcCCCCCCHHHHHHHhcCCCcccccCCCCCCChHHHHHHcCC
Q 037955          670 SLTTGTTLRTKILQHGGAKEPADMLNDLVGDGILRYCNGGIVPDITSFSDEVKL  723 (733)
Q Consensus       670 ~~~~G~~~r~~vL~~Ggs~~~~ell~~flGrd~~~~~~~g~~p~~~a~l~~~g~  723 (733)
                      |+++|++||++||++||++||+++|++|+||          +|+++|||+.+||
T Consensus       622 n~~~G~~~r~~iL~~Ggs~~~~~~~~~f~GR----------~p~~~a~l~~~gl  665 (665)
T d1i1ip_         622 NPEVGMKYRNLILKPGGSLDGMDMLQNFLQR----------EPNQKAFLMSRGL  665 (665)
T ss_dssp             CHHHHHHHHHHTTTTTTSSCHHHHHHHHHSS----------CCCSHHHHHHHTC
T ss_pred             CHHHHHHHHHHhccccCCccHHHHHHHhcCC----------CCChHHHHHhCCC
Confidence            9999999999999999999999999999999          6999999999997
>d1s4bp_ d.92.1.5 (P:) Neurolysin (endopeptidase 24.16, thimet oligopeptidase) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ajfa1 d.92.1.5 (A:19-615) Angiotensin converting enzyme 2, ACE2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1uzea_ d.92.1.5 (A:) Angiotensin converting enzyme, ACE {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1j36a_ d.92.1.5 (A:) Angiotensin converting enzyme, ACE {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1k9xa_ d.92.1.5 (A:) Thermostable carboxypeptidase 1 {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1kapp2 d.92.1.6 (P:1-246) Metalloprotease {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1g9ka2 d.92.1.6 (A:3-244) Metalloprotease {Pseudomonas sp., tac ii 18 [TaxId: 306]} Back     information, alignment and structure
>d1hfca_ d.92.1.11 (A:) Fibroblast collagenase (MMP-1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1j7na2 d.92.1.14 (A:551-773) Anthrax toxin lethal factor, N- and C-terminal domains {Bacillus anthracis [TaxId: 1392]} Back     information, alignment and structure
>d1y93a1 d.92.1.11 (A:106-263) Macrophage elastase (MMP-12) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hv5a_ d.92.1.11 (A:) Stromelysin-3 (MMP-11) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1k7ia2 d.92.1.6 (A:18-258) Metalloprotease {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1rm8a_ d.92.1.11 (A:) Matrix metalloproteinase-16 (MMP-16) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hy7a_ d.92.1.11 (A:) Stromelysin-1 (MMP-3) {Human (Homo sapiens), fibroblast [TaxId: 9606]} Back     information, alignment and structure
>d1i76a_ d.92.1.11 (A:) Neutrophil collagenase (MMP-8) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qiba_ d.92.1.11 (A:) Gelatinase A {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1sata2 d.92.1.6 (A:4-246) Metalloprotease {Serratia marcescens [TaxId: 615]} Back     information, alignment and structure
>d2ovxa1 d.92.1.11 (A:110-443) Gelatinase B (MMP-9) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mmqa_ d.92.1.11 (A:) Matrilysin (MMP-7) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure