Citrus Sinensis ID: 037957
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 841 | 2.2.26 [Sep-21-2011] | |||||||
| Q5XVJ4 | 891 | Fanconi-associated nuclea | yes | no | 0.958 | 0.904 | 0.550 | 0.0 | |
| Q5SNL7 | 964 | Fanconi-associated nuclea | yes | no | 0.995 | 0.868 | 0.472 | 0.0 | |
| Q69ZT1 | 1020 | Fanconi-associated nuclea | yes | no | 0.644 | 0.531 | 0.312 | 3e-68 | |
| Q1LWH4 | 988 | Fanconi-associated nuclea | yes | no | 0.664 | 0.565 | 0.289 | 2e-63 | |
| Q9Y2M0 | 1017 | Fanconi-associated nuclea | yes | no | 0.649 | 0.536 | 0.294 | 3e-63 | |
| D2HNY3 | 1025 | Fanconi-associated nuclea | yes | no | 0.656 | 0.538 | 0.296 | 3e-62 | |
| Q9Y804 | 703 | Fanconi-associated nuclea | yes | no | 0.651 | 0.779 | 0.282 | 5e-51 | |
| Q55FW8 | 1087 | Fanconi-associated nuclea | yes | no | 0.167 | 0.129 | 0.421 | 2e-29 | |
| P90740 | 865 | Fanconi-associated nuclea | yes | no | 0.614 | 0.597 | 0.244 | 7e-27 | |
| A8WZU5 | 878 | Fanconi-associated nuclea | N/A | no | 0.608 | 0.583 | 0.251 | 3e-25 |
| >sp|Q5XVJ4|FAN1_ARATH Fanconi-associated nuclease 1 homolog OS=Arabidopsis thaliana GN=At1g48360 PE=2 SV=2 | Back alignment and function desciption |
|---|
Score = 904 bits (2335), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 480/872 (55%), Positives = 597/872 (68%), Gaps = 66/872 (7%)
Query: 1 MLTGRDSLNRLIGKRRRYLPNRESLLSAPIQVTL---------LNELLLDAC-------- 43
MLTGR+SL RLIGKRRR+LPNR LLSA +L L L D C
Sbjct: 1 MLTGRESLLRLIGKRRRFLPNRHLLLSAHTPNSLNLEFNDYGNLVSLAGDDCRLSEDPTS 60
Query: 44 ------------LARGTKRKLTQRTLLQLNFSAQTQDQNHSNETKLSTTNVFSEGPVESL 91
L+ KR+LTQ TLLQ +F LS +G V
Sbjct: 61 SDDPSKFSDDLSLSTRKKRRLTQTTLLQSSF--------------LSVPKQLEDGLVICT 106
Query: 92 EQNSICGLANYVAVEDYNSNHWRSTENTTSHQRINCDEKTPLSSPHINGPEHDVNVTVDG 151
+Q SI D + + + + + I C + SP + E VT+D
Sbjct: 107 QQKSIL---------DSETFEFSLVQRSEPSESICCKVEDGSCSP--SREESLKTVTLDE 155
Query: 152 MSEATLRTFIVGRRYSDEKEIKIGAHISLSRDPNNVKDPNAIKVFSADSGCCKVLGYLPK 211
+ + TFIVGR++SD ++++IG I L R P NVKD NAIKV S DS ++LGYLPK
Sbjct: 156 DNGEAIETFIVGRKFSDVQDLEIGGDIFLLRHPENVKDRNAIKVISGDS---EMLGYLPK 212
Query: 212 ELSEYLSPLMEKYSLSFEGFVISAPKHSLDVVQIKITYHKIESDNENDDDIEVS-TCLWK 270
++S+ LSPL++ Y L FEG + S PK S + V IK+ HK+ SD + ++ LW+
Sbjct: 213 DISQCLSPLIDDYDLKFEGTITSVPKKSSEAVLIKVVCHKMRSDGWKECELYGDFKPLWE 272
Query: 271 RALHVARSAKGYPSSMIKYQCNFNLLIQEVLGNSRHLFKADEIDFLESFSMLSEDSQRLF 330
+ L V +P +YQ NFN+L+QEVL + HLF ADE FLESF LSEDSQRLF
Sbjct: 273 KVLQVVEHQMQFPPKTTRYQLNFNVLLQEVLRSCSHLFTADEKAFLESFPTLSEDSQRLF 332
Query: 331 VRLYMRKGPWFRLSNISYPEVSNSREAVRELIDNGYICSSEDTNEL-HDAIKDICNLLTV 389
+RLY RKGPWFRLSNISYPEV++S +A+++L G++ S +D NEL + +K+I LL V
Sbjct: 333 IRLYTRKGPWFRLSNISYPEVTDSLQALKDLTVRGFMSSVKDANELDNQKMKEITELLNV 392
Query: 390 SELREISCVLQNCHRGSRKQKVIASLLCFYEDGICPFLPKMILDRTGLCIRVASKAEHLI 449
+ELR+I + + R SRK+ +I SL Y DG L +IL+RTGLC +V+S AE LI
Sbjct: 393 TELRDILSMNKVFSRTSRKRDLINSLCSCYNDGTRINLATVILERTGLCAKVSSTAESLI 452
Query: 450 WRAERLFFLNGEQDLSAFLLVDLGIVKYPTYNCIIAEQIFSGLCDLLAYEEAIELAQIMD 509
WR ERLFFLNGEQDLS+F+L+DLGI+KYPTY CI +EQIFS LLAYEEAIE+AQ+MD
Sbjct: 453 WRVERLFFLNGEQDLSSFVLLDLGIIKYPTYKCIDSEQIFSNRTKLLAYEEAIEVAQLMD 512
Query: 510 QSLDENNIELVLRCIMIAESRMSSSSCKAVQSITSELANTFHSCFSASWVYSKVVLLGIS 569
+SLD + + VL+CI+IAE+R+SSS S+ S A F+ F+A WV SKVVLLG+S
Sbjct: 513 ESLDNEDPQTVLKCIIIAETRISSS------SLDSAHAAAFNR-FTAPWVNSKVVLLGVS 565
Query: 570 FLEREQRFNDAINLLRRLLSCFTCDSRRGYWTLRLSIDLEHMGCPSESLSVAEGGLLDSW 629
F E ++R+N A+ LLRRLLSCF CD RRGYWT+RLS DLEHMG P+ESL+VAE GLLD W
Sbjct: 566 FFENQKRYNRAVYLLRRLLSCFNCDGRRGYWTVRLSTDLEHMGRPNESLTVAEQGLLDPW 625
Query: 630 VRAGSRVALQRRVLRLGKPPRRWKIPSFSESIKRKITEIHVQGRPLNCEIGMKSWFYGED 689
VRAGSRVALQRR+LRL KPPRRWK P+FS + KI E+ +QGR LNCE+G+K+ FYGED
Sbjct: 626 VRAGSRVALQRRILRLAKPPRRWKTPTFSNLVDNKIPEVTIQGRSLNCEVGIKNRFYGED 685
Query: 690 GEKCGVEQLALQYYAGEGGGWHGVHTESGIWLTIFGLLMWDILFSDVPDVFRSRFQNAPL 749
GE+CGVEQLALQYY+GEGGGW G+HTES IWLTIFGLLMWDILFSDVP VF++RFQ APL
Sbjct: 686 GEQCGVEQLALQYYSGEGGGWQGIHTESSIWLTIFGLLMWDILFSDVPGVFQTRFQTAPL 745
Query: 750 DLATDSFYIVRKNLIESQLQKIYDGMAEEILITSWESHVGTVCRGVNWDRHSLSELRAAV 809
DL T+SFY+ RK IESQL+K+ +GMAEEILI S+E+ GT CRGV W+R SL ELRAAV
Sbjct: 746 DLETESFYLTRKETIESQLEKVANGMAEEILIISYETQRGTACRGVAWERFSLEELRAAV 805
Query: 810 TCIGGPCLAHLCRHLAQDYGSWSSGMPDLLIW 841
C+GG C+A LCRHLAQDY SW SGMPDLL+W
Sbjct: 806 ACVGGMCIASLCRHLAQDYRSWCSGMPDLLVW 837
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Nuclease. Arabidopsis thaliana (taxid: 3702) EC: 3EC: .EC: 1EC: .EC: -EC: .EC: - |
| >sp|Q5SNL7|FAN1_ORYSJ Fanconi-associated nuclease 1 homolog OS=Oryza sativa subsp. japonica GN=Os06g0171800 PE=3 SV=1 | Back alignment and function description |
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| >sp|Q69ZT1|FAN1_MOUSE Fanconi-associated nuclease 1 OS=Mus musculus GN=Fan1 PE=2 SV=2 | Back alignment and function description |
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| >sp|Q1LWH4|FAN1_DANRE Fanconi-associated nuclease 1 OS=Danio rerio GN=fan1 PE=2 SV=2 | Back alignment and function description |
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| >sp|Q9Y2M0|FAN1_HUMAN Fanconi-associated nuclease 1 OS=Homo sapiens GN=FAN1 PE=1 SV=4 | Back alignment and function description |
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| >sp|D2HNY3|FAN1_AILME Fanconi-associated nuclease 1 OS=Ailuropoda melanoleuca GN=FAN1 PE=3 SV=2 | Back alignment and function description |
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| >sp|Q9Y804|FAN1_SCHPO Fanconi-associated nuclease 1 homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC146.06c PE=3 SV=1 | Back alignment and function description |
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| >sp|Q55FW8|FAN1_DICDI Fanconi-associated nuclease 1 homolog OS=Dictyostelium discoideum GN=mtmr15 PE=3 SV=1 | Back alignment and function description |
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| >sp|P90740|FAN1_CAEEL Fanconi-associated nuclease 1 homolog OS=Caenorhabditis elegans GN=fan-1 PE=1 SV=1 | Back alignment and function description |
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| >sp|A8WZU5|FAN1_CAEBR Fanconi-associated nuclease 1 homolog OS=Caenorhabditis briggsae GN=fan-1 PE=3 SV=2 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 841 | ||||||
| 225433682 | 955 | PREDICTED: fanconi-associated nuclease 1 | 1.0 | 0.880 | 0.625 | 0.0 | |
| 296089618 | 951 | unnamed protein product [Vitis vinifera] | 0.996 | 0.881 | 0.626 | 0.0 | |
| 224069088 | 1028 | predicted protein [Populus trichocarpa] | 0.824 | 0.674 | 0.695 | 0.0 | |
| 449447791 | 949 | PREDICTED: fanconi-associated nuclease 1 | 0.986 | 0.874 | 0.557 | 0.0 | |
| 356567204 | 981 | PREDICTED: fanconi-associated nuclease 1 | 0.975 | 0.835 | 0.554 | 0.0 | |
| 357502889 | 922 | Coiled-coil domain-containing protein MT | 0.963 | 0.878 | 0.542 | 0.0 | |
| 186489458 | 891 | fanconi-associated nuclease 1-like prote | 0.958 | 0.904 | 0.550 | 0.0 | |
| 8778959 | 896 | Contains similarity to KIAA1018 protein | 0.958 | 0.899 | 0.548 | 0.0 | |
| 297847092 | 882 | hypothetical protein ARALYDRAFT_473972 [ | 0.939 | 0.895 | 0.546 | 0.0 | |
| 115466676 | 964 | Os06g0171800 [Oryza sativa Japonica Grou | 0.995 | 0.868 | 0.472 | 0.0 |
| >gi|225433682|ref|XP_002265776.1| PREDICTED: fanconi-associated nuclease 1 homolog [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1108 bits (2866), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 566/905 (62%), Positives = 672/905 (74%), Gaps = 64/905 (7%)
Query: 1 MLTGRDSLNRLIGKRRRYLPNRESLLSAPIQVTL-------------------------- 34
MLTGR+SL RLIGKRRR+LPNR+SLLSAPI+ TL
Sbjct: 1 MLTGRESLIRLIGKRRRFLPNRQSLLSAPIESTLSLSGDENGGMLERTAGVSGETTSSKV 60
Query: 35 -----------------LNELLLDACLARGTKRKLTQRTLLQLNFSAQTQDQNHSNETKL 77
+ LDACLARGTKRKLTQRTLLQLNF +++ D+ S E+K
Sbjct: 61 DWVPCPVCGSTIRGEDYMINSHLDACLARGTKRKLTQRTLLQLNFCSRSMDKLDSGESKH 120
Query: 78 STTNVFSEGPVESLEQNSICGLANYVAVEDYNSNHWR---------------STENTTSH 122
+ + P +L +++ + A E+ ++ ++ S EN +
Sbjct: 121 LENSGVLKAPDNNLVRSTTPKFSYLGAFEENDNKQFKLDIHLDSVMRNYIDSSAENLIND 180
Query: 123 QRINCD--EKTPLSSPHINGPEHDVNVTVDGMSEATLRTFIVGRRYSDEKEIKIGAHISL 180
+ D +P P P+HD+ V +D +S TL TFIVGR++SDE+E+ IGA ISL
Sbjct: 181 DTTSYDTSSNSPSLLPKDEMPKHDITVAMDNLSGVTLETFIVGRKFSDEEELNIGASISL 240
Query: 181 SRDPNNVKDPNAIKVFSADSGCCKVLGYLPKELSEYLSPLMEKYSLSFEGFVISAPKHSL 240
RDP+NVKDPNAIKV S SGC KVLG+LP+EL++YLSPL+EKY ++FEG V S PKHSL
Sbjct: 241 LRDPDNVKDPNAIKVLSTASGCSKVLGFLPRELAQYLSPLIEKYCMNFEGCVTSVPKHSL 300
Query: 241 DVVQIKITYHKIESDNEND-DDIEVSTCLWKRALHVARSAKGYPSSMIKYQCNFNLLIQE 299
DVV I+I + E + DD+E LWKR L SAK P S+ KYQ NF LIQE
Sbjct: 301 DVVPIQIVNQIMIPCGEKEFDDLEAFRFLWKRVLQTVESAKTCPPSIAKYQRNFCFLIQE 360
Query: 300 VLGNSRHLFKADEIDFLESFSMLSEDSQRLFVRLYMRKGPWFRLSNISYPEVSNSREAVR 359
VL ++ HLF DE FL SF+ LS+D QR+FVRLY RKGPWFR+ NISYPEV +S++AVR
Sbjct: 361 VLASNPHLFTDDEKIFLGSFTSLSDDCQRIFVRLYTRKGPWFRMCNISYPEVLDSKQAVR 420
Query: 360 ELIDNGYICSSEDTNELHDA--IKDICNLLTVSELREIS-CVLQNCHRGSRKQKVIASLL 416
L D GYICSS+ E HD +K++ NLLTVSELREIS V+++CH G+RKQ +IASLL
Sbjct: 421 GLSDAGYICSSQSMIEPHDNGDMKEVLNLLTVSELREISSAVMKHCHHGTRKQDLIASLL 480
Query: 417 CFYEDGICPFLPKMILDRTGLCIRVASKAEHLIWRAERLFFLNGEQDLSAFLLVDLGIVK 476
YEDG+CP L + IL++TG C+R++ KAE L+WRA RLFFLNGEQDLSAFLLVDLGIVK
Sbjct: 481 SSYEDGLCPLLQRAILNKTGTCVRISCKAESLVWRALRLFFLNGEQDLSAFLLVDLGIVK 540
Query: 477 YPTYNCIIAEQIFSGLCDLLAYEEAIELAQIMDQSLDENNIELVLRCIMIAESRMSSSSC 536
YPTYNCII++QIF GL DLLAYEEAIE+AQIMD++LD+ N LVLRCI I+ SR+ S
Sbjct: 541 YPTYNCIISDQIFPGLNDLLAYEEAIEVAQIMDEALDDKNSGLVLRCISISNSRLFISCS 600
Query: 537 KAVQSITSELANTFHSCFSASWVYSKVVLLGISFLEREQRFNDAINLLRRLLSCFTCDSR 596
K+ QS SE A TF SC SASWVYSKVVLLGISFLERE+R++DA++LL+RLL FTCD R
Sbjct: 601 KSTQSSASESAATFLSCLSASWVYSKVVLLGISFLERERRYDDAVHLLKRLLDGFTCDGR 660
Query: 597 RGYWTLRLSIDLEHMGCPSESLSVAEGGLLDSWVRAGSRVALQRRVLRLGKPPRRWKIPS 656
RGYWTLRLS+DLEH+G +ESLSVAE GLLD WVRAGSR+ALQRRVLRLGKPPRRWK P
Sbjct: 661 RGYWTLRLSVDLEHLGRLNESLSVAEDGLLDPWVRAGSRMALQRRVLRLGKPPRRWKTPC 720
Query: 657 FSESIKRKITEIHVQGRPLNCEIGMKSWFYGEDGEKCGVEQLALQYYAGEGGGWHGVHTE 716
+SE+IKRKI E+HVQGRPLNCE GMKS FYGEDGE+CGVEQLALQYYAGEGGGW GVHTE
Sbjct: 721 YSEAIKRKIIEVHVQGRPLNCETGMKSRFYGEDGEQCGVEQLALQYYAGEGGGWQGVHTE 780
Query: 717 SGIWLTIFGLLMWDILFSDVPDVFRSRFQNAPLDLATDSFYIVRKNLIESQLQKIYDGMA 776
SGIWLTIFGLLMWDI+F+DVP+VF +RFQ APLDL T +FY++RK+LIES L+KI MA
Sbjct: 781 SGIWLTIFGLLMWDIIFADVPNVFHTRFQTAPLDLETQNFYVMRKSLIESHLEKINSDMA 840
Query: 777 EEILITSWESHVGTVCRGVNWDRHSLSELRAAVTCIGGPCLAHLCRHLAQDYGSWSSGMP 836
EEILITSWESHVG CRGVNWDRHSLSELRAAVTCIGGPCLA +CRHLAQDY SWSSGMP
Sbjct: 841 EEILITSWESHVGVACRGVNWDRHSLSELRAAVTCIGGPCLASICRHLAQDYRSWSSGMP 900
Query: 837 DLLIW 841
DLL+W
Sbjct: 901 DLLLW 905
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296089618|emb|CBI39437.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|224069088|ref|XP_002302897.1| predicted protein [Populus trichocarpa] gi|222844623|gb|EEE82170.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
| >gi|449447791|ref|XP_004141651.1| PREDICTED: fanconi-associated nuclease 1 homolog [Cucumis sativus] gi|449506836|ref|XP_004162862.1| PREDICTED: fanconi-associated nuclease 1 homolog [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|356567204|ref|XP_003551811.1| PREDICTED: fanconi-associated nuclease 1 homolog [Glycine max] | Back alignment and taxonomy information |
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| >gi|357502889|ref|XP_003621733.1| Coiled-coil domain-containing protein MTMR15 [Medicago truncatula] gi|355496748|gb|AES77951.1| Coiled-coil domain-containing protein MTMR15 [Medicago truncatula] | Back alignment and taxonomy information |
|---|
| >gi|186489458|ref|NP_001117447.1| fanconi-associated nuclease 1-like protein [Arabidopsis thaliana] gi|306755802|sp|Q5XVJ4.2|FAN1_ARATH RecName: Full=Fanconi-associated nuclease 1 homolog gi|332194158|gb|AEE32279.1| fanconi-associated nuclease 1-like protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
| >gi|8778959|gb|AAD49761.2|AC007932_9 Contains similarity to KIAA1018 protein from Homo sapiens gb|AB023235 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
| >gi|297847092|ref|XP_002891427.1| hypothetical protein ARALYDRAFT_473972 [Arabidopsis lyrata subsp. lyrata] gi|297337269|gb|EFH67686.1| hypothetical protein ARALYDRAFT_473972 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
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| >gi|115466676|ref|NP_001056937.1| Os06g0171800 [Oryza sativa Japonica Group] gi|75108875|sp|Q5SNL7.1|FAN1_ORYSJ RecName: Full=Fanconi-associated nuclease 1 homolog gi|55773650|dbj|BAD72189.1| unknown protein [Oryza sativa Japonica Group] gi|113594977|dbj|BAF18851.1| Os06g0171800 [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
|---|
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 841 | ||||||
| TAIR|locus:2007740 | 891 | AT1G48360 [Arabidopsis thalian | 0.983 | 0.928 | 0.549 | 7.3e-233 | |
| DICTYBASE|DDB_G0267916 | 1087 | mtmr15 "myotubularin related p | 0.172 | 0.133 | 0.430 | 1.1e-62 | |
| MGI|MGI:3045266 | 1020 | Fan1 "FANCD2/FANCI-associated | 0.449 | 0.370 | 0.338 | 8.1e-62 | |
| RGD|1566323 | 1015 | Fan1 "FANCD2/FANCI-associated | 0.449 | 0.372 | 0.345 | 1.7e-59 | |
| UNIPROTKB|D2HNY3 | 1025 | FAN1 "Fanconi-associated nucle | 0.449 | 0.368 | 0.335 | 1.3e-57 | |
| UNIPROTKB|F1PPU4 | 1029 | FAN1 "Uncharacterized protein" | 0.449 | 0.367 | 0.335 | 7e-57 | |
| UNIPROTKB|F1SNR1 | 1020 | FAN1 "Uncharacterized protein" | 0.449 | 0.370 | 0.331 | 2.7e-54 | |
| UNIPROTKB|F1MZ88 | 1023 | FAN1 "Uncharacterized protein" | 0.445 | 0.366 | 0.334 | 5.5e-54 | |
| ZFIN|ZDB-GENE-030131-6225 | 988 | fan1 "FANCD2/FANCI-associated | 0.392 | 0.334 | 0.276 | 1.2e-53 | |
| UNIPROTKB|Q9Y2M0 | 1017 | FAN1 "Fanconi-associated nucle | 0.447 | 0.369 | 0.321 | 2.2e-49 |
| TAIR|locus:2007740 AT1G48360 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2246 (795.7 bits), Expect = 7.3e-233, P = 7.3e-233
Identities = 468/851 (54%), Positives = 588/851 (69%)
Query: 1 MLTGRDSLNRLIGKRRRYLPNRESLLSA--PIQVTXXXXXXXXXXXARGTKRKLTQRTLL 58
MLTGR+SL RLIGKRRR+LPNR LLSA P + G +L++
Sbjct: 1 MLTGRESLLRLIGKRRRFLPNRHLLLSAHTPNSLNLEFNDYGNLVSLAGDDCRLSEDPTS 60
Query: 59 QLNFSAQTQDQNHSNETK--LSTTNVFSEGPV---ESLEQNS-ICGLANYVAVEDYNSNH 112
+ S + D + S K L+ T + + + LE IC ++ D +
Sbjct: 61 SDDPSKFSDDLSLSTRKKRRLTQTTLLQSSFLSVPKQLEDGLVIC--TQQKSILDSETFE 118
Query: 113 WRSTENTTSHQRINCDEKTPLSSPHINGPEHDVNVTVDGMSEATLRTFIVGRRYSDEKEI 172
+ + + + I C + SP + E VT+D + + TFIVGR++SD +++
Sbjct: 119 FSLVQRSEPSESICCKVEDGSCSP--SREESLKTVTLDEDNGEAIETFIVGRKFSDVQDL 176
Query: 173 KIGAHISLSRDPNNVKDPNAIKVFSADSGCCKVLGYLPKELSEYLSPLMEKYSLSFEGFV 232
+IG I L R P NVKD NAIKV S DS ++LGYLPK++S+ LSPL++ Y L FEG +
Sbjct: 177 EIGGDIFLLRHPENVKDRNAIKVISGDS---EMLGYLPKDISQCLSPLIDDYDLKFEGTI 233
Query: 233 ISAPKHSLDVVQIKITYHKXXXXXXXXXXXXVS-TCLWKRALHVARSAKGYPSSMIKYQC 291
S PK S + V IK+ HK LW++ L V +P +YQ
Sbjct: 234 TSVPKKSSEAVLIKVVCHKMRSDGWKECELYGDFKPLWEKVLQVVEHQMQFPPKTTRYQL 293
Query: 292 NFNLLIQEVLGNSRHLFKADEIDFLESFSMLSEDSQRLFVRLYMRKGPWFRLSNISYPEV 351
NFN+L+QEVL + HLF ADE FLESF LSEDSQRLF+RLY RKGPWFRLSNISYPEV
Sbjct: 294 NFNVLLQEVLRSCSHLFTADEKAFLESFPTLSEDSQRLFIRLYTRKGPWFRLSNISYPEV 353
Query: 352 SNSREAVRELIDNGYICSSEDTNEL-HDAIKDICNLLTVSELREISCVLQNCHRGSRKQK 410
++S +A+++L G++ S +D NEL + +K+I LL V+ELR+I + + R SRK+
Sbjct: 354 TDSLQALKDLTVRGFMSSVKDANELDNQKMKEITELLNVTELRDILSMNKVFSRTSRKRD 413
Query: 411 VIASLLCFYEDGICPFLPKMILDRTGLCIRVASKAEHLIWRAERLFFLNGEQDLSAFLLV 470
+I SL Y DG L +IL+RTGLC +V+S AE LIWR ERLFFLNGEQDLS+F+L+
Sbjct: 414 LINSLCSCYNDGTRINLATVILERTGLCAKVSSTAESLIWRVERLFFLNGEQDLSSFVLL 473
Query: 471 DLGIVKYPTYNCIIAEQIFSGLCDLLAYEEAIELAQIMDQSLDENNIELVLRCIMIAESR 530
DLGI+KYPTY CI +EQIFS LLAYEEAIE+AQ+MD+SLD + + VL+CI+IAE+R
Sbjct: 474 DLGIIKYPTYKCIDSEQIFSNRTKLLAYEEAIEVAQLMDESLDNEDPQTVLKCIIIAETR 533
Query: 531 MSSSSCKAVQSITSELANTFHSCFSASWVYSKVVLLGISFLEREQRFNDAINLLRRLLSC 590
+SSSS + S A F+ F+A WV SKVVLLG+SF E ++R+N A+ LLRRLLSC
Sbjct: 534 ISSSS------LDSAHAAAFNR-FTAPWVNSKVVLLGVSFFENQKRYNRAVYLLRRLLSC 586
Query: 591 FTCDSRRGYWTLRLSIDLEHMGCPSESLSVAEGGLLDSWVRAGSRVALQRRVLRLGKPPR 650
F CD RRGYWT+RLS DLEHMG P+ESL+VAE GLLD WVRAGSRVALQRR+LRL KPPR
Sbjct: 587 FNCDGRRGYWTVRLSTDLEHMGRPNESLTVAEQGLLDPWVRAGSRVALQRRILRLAKPPR 646
Query: 651 RWKIPSFSESIKRKITEIHVQGRPLNCEIGMKSWFYGEDGEKCGVEQLALQYYAGEGGGW 710
RWK P+FS + KI E+ +QGR LNCE+G+K+ FYGEDGE+CGVEQLALQYY+GEGGGW
Sbjct: 647 RWKTPTFSNLVDNKIPEVTIQGRSLNCEVGIKNRFYGEDGEQCGVEQLALQYYSGEGGGW 706
Query: 711 HGVHTESGIWLTIFGLLMWDILFSDVPDVFRSRFQNAPLDLATDSFYIVRKNLIESQLQK 770
G+HTES IWLTIFGLLMWDILFSDVP VF++RFQ APLDL T+SFY+ RK IESQL+K
Sbjct: 707 QGIHTESSIWLTIFGLLMWDILFSDVPGVFQTRFQTAPLDLETESFYLTRKETIESQLEK 766
Query: 771 IYDGMAEEILITSWESHVGTVCRGVNWDRHSLSELRAAVTCIGGPCLAHLCRHLAQDYGS 830
+ +GMAEEILI S+E+ GT CRGV W+R SL ELRAAV C+GG C+A LCRHLAQDY S
Sbjct: 767 VANGMAEEILIISYETQRGTACRGVAWERFSLEELRAAVACVGGMCIASLCRHLAQDYRS 826
Query: 831 WSSGMPDLLIW 841
W SGMPDLL+W
Sbjct: 827 WCSGMPDLLVW 837
|
|
| DICTYBASE|DDB_G0267916 mtmr15 "myotubularin related protein 15" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
| MGI|MGI:3045266 Fan1 "FANCD2/FANCI-associated nuclease 1" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
| RGD|1566323 Fan1 "FANCD2/FANCI-associated nuclease 1" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|D2HNY3 FAN1 "Fanconi-associated nuclease 1" [Ailuropoda melanoleuca (taxid:9646)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1PPU4 FAN1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1SNR1 FAN1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1MZ88 FAN1 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
| ZFIN|ZDB-GENE-030131-6225 fan1 "FANCD2/FANCI-associated nuclease 1" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q9Y2M0 FAN1 "Fanconi-associated nuclease 1" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q5XVJ4 | FAN1_ARATH | 3, ., 1, ., -, ., - | 0.5504 | 0.9583 | 0.9046 | yes | no |
| Q5SNL7 | FAN1_ORYSJ | 3, ., 1, ., -, ., - | 0.4721 | 0.9952 | 0.8682 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 3.1.4 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
 |
 |
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 |
 |
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 |
 |
 | GSVIVG00033544001 | SubName- Full=Chromosome chr5 scaffold_67, whole genome shotgun sequence; (882 aa) | ||||||
(Vitis vinifera) | ||||||||
| Sorry, there are no predicted associations at the current settings. |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 841 | |||
| pfam08797 | 95 | pfam08797, HIRAN, HIRAN domain | 7e-17 | |
| smart00910 | 90 | smart00910, HIRAN, The HIRAN protein (HIP116, Rad5 | 5e-15 | |
| smart00990 | 108 | smart00990, VRR_NUC, This model contains proteins | 3e-04 |
| >gnl|CDD|220020 pfam08797, HIRAN, HIRAN domain | Back alignment and domain information |
|---|
Score = 76.2 bits (188), Expect = 7e-17
Identities = 33/89 (37%), Positives = 56/89 (62%), Gaps = 4/89 (4%)
Query: 156 TLRTFIVGRRYSDE--KEIKIGAHISLSRDPNNVKDPNAIKVFSADSGCCKVLGYLPKEL 213
+L +VG RY E + +K+G + L R+P+N D NAI+V++ +GYLP+E+
Sbjct: 3 SLEVTVVGTRYEGEGTRYLKVGEEVVLVREPDNPYDKNAIRVYNVGR--FSEIGYLPREV 60
Query: 214 SEYLSPLMEKYSLSFEGFVISAPKHSLDV 242
+ L+PL++ + FEG V+SAP ++L +
Sbjct: 61 AAILAPLLDSGGVKFEGRVVSAPNNALSL 89
|
The HIRAN domain (HIP116, Rad5p N-terminal) is found in the N-terminal regions of the SWI2/SNF2 proteins typified by HIP116 and Rad5p. The HIRAN domain is found as a standalone protein in several bacteria and prophages, or fused to other catalytic domains, such as a nuclease of the restriction endonuclease fold and TDP1-like DNA phosphoesterases, in the eukaryotes. It has been predicted that this domain functions as a DNA-binding domain that probably recognises features associated with damaged DNA or stalled replication forks. Length = 95 |
| >gnl|CDD|214906 smart00910, HIRAN, The HIRAN protein (HIP116, Rad5p N-terminal) is found in the N-terminal regions of the SWI2/SNF2 proteins typified by HIP116 and Rad5p | Back alignment and domain information |
|---|
| >gnl|CDD|214959 smart00990, VRR_NUC, This model contains proteins with the VRR-NUC domain | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 841 | |||
| KOG2143 | 854 | consensus Uncharacterized conserved protein [Funct | 100.0 | |
| PF08797 | 107 | HIRAN: HIRAN domain; InterPro: IPR014905 The HIRAN | 99.72 | |
| PF08774 | 100 | VRR_NUC: VRR-NUC domain; InterPro: IPR014883 This | 96.57 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 85.3 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 82.39 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 82.21 | |
| PF07498 | 43 | Rho_N: Rho termination factor, N-terminal domain; | 80.6 |
| >KOG2143 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-117 Score=979.74 Aligned_cols=628 Identities=36% Similarity=0.575 Sum_probs=549.5
Q ss_pred ccccccccchhhhcccccccCCCceeEEEeecCCCCCceeEEEEEEEeccCCCCCCchhhh--HHHHHH-----------
Q 037957 204 KVLGYLPKELSEYLSPLMEKYSLSFEGFVISAPKHSLDVVQIKITYHKIESDNENDDDIEV--STCLWK----------- 270 (841)
Q Consensus 204 ~~lGyipr~~a~~la~l~D~g~~~~~g~v~~~~~~~~~~~pi~i~~~~~~s~~~~~~~~~~--~~~~W~----------- 270 (841)
..+||+|+.....+.+.|+......++..+..|+. -.+.+++-|+.+.++...+++.+. --.+|.
T Consensus 116 ~~~~~~pgfs~~a~~~~~pD~sl~nt~ksts~pk~--~kv~~kvvch~~rs~~~~e~e~kgq~~~~~we~~~~~~~~~~s 193 (854)
T KOG2143|consen 116 DIVPEVPGFSGIAKNHEMPDESLDNTEKSTSIPKV--IKVSPKVVCHRRRSSRLLENEQKGQADNANWEDPVKKETATIS 193 (854)
T ss_pred hccccCCCchhhhccCCCCcccccccccccccchh--hhhhHHHHhccccccchhhhhhhccccchhhccccccccccHH
Confidence 68999999999999999999988899998886643 236677778888777632222221 115777
Q ss_pred HHHHHhhhcCCCC----CCcchHHHHHHHHHHHHHhcCC--CCCCHhHHHHHHHHhcCCccchhhheeeccccCceEeec
Q 037957 271 RALHVARSAKGYP----SSMIKYQCNFNLLIQEVLGNSR--HLFKADEIDFLESFSMLSEDSQRLFVRLYMRKGPWFRLS 344 (841)
Q Consensus 271 ~~~~~~~~~~~~~----~~~~YYl~nF~~vL~~V~~~~~--hLL~e~E~~fl~~F~~Ls~~AQ~L~VRL~~RKg~wFR~s 344 (841)
.++++++.....+ ++.+||+.+|..+|.+|++.+. |||+++|+.|++.|.+||.++||||||||+||++|||++
T Consensus 194 ~Vlq~ieh~~q~~~g~~tk~pyYll~f~viLktVL~~e~~~hlFtadEk~f~e~f~~Lsed~q~LfVRLF~RK~~Wfrl~ 273 (854)
T KOG2143|consen 194 EVLQAIEHFEQRVSGPETKWPYYLLIFIVILKTVLSTEKFDHLFTADEKWFYEFFELLSEDAQCLFVRLFIRKPAWFRLE 273 (854)
T ss_pred HHHhhhhhhccccCCCCCCCchHHHHHHHHHHHHHhcCCcccccchhhHHHHHHHHHhccccceeeehhhhccccceeec
Confidence 8999999988887 7889999999999999999887 999999999999999999999999999999999999999
Q ss_pred CCCCCCCC-CHHHHHHHHHhcCCcccCcCcccccccHHHHHhhcCHHHHHHHHHhhhccCCCCchHHHHHHHHhhccC--
Q 037957 345 NISYPEVS-NSREAVRELIDNGYICSSEDTNELHDAIKDICNLLTVSELREISCVLQNCHRGSRKQKVIASLLCFYED-- 421 (841)
Q Consensus 345 kL~Y~EI~-di~~Al~eL~~~g~l~~~~~~~~~~~~~~ell~lLtk~EL~~l~~~~~~~~~~~~K~~Li~~L~~~~~~-- 421 (841)
+|.|+|+. |+.+|+.+|...||+++.+++ .+.+|++++|.++||+.+++.++..+...++..+....+....+
T Consensus 274 kLeype~~~Di~~a~keLt~~gF~~dessl----~~l~E~leils~~ELknvtk~fkl~g~~r~~~s~~~~fl~~~~qrs 349 (854)
T KOG2143|consen 274 KLEYPEPEIDIKEAVKELTKGGFIDDESSL----KTLDEALEILSVVELKNVTKKFKLDGTKRRQESIQSLFLFAQSQRS 349 (854)
T ss_pred cccCccccccHHHHHHHHHhcccccchhhh----hhHHHHHHhhhhHHHHHHHHHhcccCcchhHHHHHHHHHHHHhhhh
Confidence 99999999 999999999999999986531 37889999999999999999999876544555555544433221
Q ss_pred ---C--CCCCh------------HHHHHHhhCceeEecchHHHHHHHHHHhhccc-----CCccchhHHHhhcCceeccc
Q 037957 422 ---G--ICPFL------------PKMILDRTGLCIRVASKAEHLIWRAERLFFLN-----GEQDLSAFLLVDLGIVKYPT 479 (841)
Q Consensus 422 ---~--~~~~~------------~~~il~~~g~cirl~~~~~~L~~Rl~lLFF~n-----~~qdls~fvL~DLG~~~yp~ 479 (841)
+ .++.. .+.+...++.|.++......+++|+.++||.+ .+|+|++++|+++|.++||+
T Consensus 350 icng~~n~~~dg~~ilk~~~~~l~~v~g~~v~lckkp~~i~~~l~~r~~~v~f~~s~~~~gqq~Lss~llv~lg~~~fP~ 429 (854)
T KOG2143|consen 350 ICNGTGNVEKDGLKILKQELGPLVRVRGGFVDLCKKPFTIYCPLTTRSANVIFNPSTTNVGQQLLSSMLLVALGTVQFPA 429 (854)
T ss_pred hhcCCCcccccHHHHhhhhhhHHHHHHhhhccccccHHHHHHHHHHHhhhheecccccccchhHHHHHHHHhcCceecCC
Confidence 1 12222 22234567788888888889999999999997 67899999999999999999
Q ss_pred ccccccccCCCChHHHHHHHHHHHHHHHHHHHhccC--CHHHHHHHHHHHHhhhcccccccccchhhhhccccccccCch
Q 037957 480 YNCIIAEQIFSGLCDLLAYEEAIELAQIMDQSLDEN--NIELVLRCIMIAESRMSSSSCKAVQSITSELANTFHSCFSAS 557 (841)
Q Consensus 480 y~~~~~~~iF~sR~dl~~Y~~A~~l~~~l~~~l~~~--~~~~l~~~~~~a~~r~~~~~~~~~~~~~~~~~~~~l~rF~~~ 557 (841)
|.+++...+|..|.++++|.+|.++++.|..+++++ ++..+..|...++.+.... .-...+++++.|.++|+.+
T Consensus 430 y~~~r~~~iF~nR~~ll~Y~ea~el~~~ivs~m~N~~edaal~lac~~~~eir~~~~----~S~r~~Edl~~f~r~ft~~ 505 (854)
T KOG2143|consen 430 YNPCRIIAIFYNRNMLLDYMEAKELEIAIVSQMSNGNEDAALDLACDAKEEIRQMSD----DSKRYYEDLEIFERKFTSI 505 (854)
T ss_pred CCccchHHhhccHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHhHHHHHHhhcCC----chhhhhhhHHHHHHHhhhh
Confidence 999999999999999999999999999999998883 4445556666555554422 1123467778999889999
Q ss_pred HHHHHHHHHHHHHHhhhhchHHHHHHHHHHhcC-----CCCCCccchhHHHHHHhh-hhcCCchHHHHHHHhhhcCcccc
Q 037957 558 WVYSKVVLLGISFLEREQRFNDAINLLRRLLSC-----FTCDSRRGYWTLRLSIDL-EHMGCPSESLSVAEGGLLDSWVR 631 (841)
Q Consensus 558 ~v~~ril~~~~~~LER~k~~~~A~~ll~~Ll~~-----~~~~~rRG~W~~RLal~L-ehl~~~~eAl~l~e~~l~dP~~~ 631 (841)
|||+||+...+.+++|++.|.+|+++++.||+. .||.++||.||+|+++++ +|+|++++++.+|+.||+||+++
T Consensus 506 wV~TRi~~~~veil~r~~~y~raVe~l~~LLst~~~~~~yc~dsRG~WwdR~llnld~hlkrk~e~lk~ie~gL~Dp~vr 585 (854)
T KOG2143|consen 506 WVFTRICGHAVEILERQKKYGRAVEWLKDLLSTNKDIQSYCIDSRGIWWDRMLLNLDSHLKRKKECLKMIEIGLQDPSVR 585 (854)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCcccchhHhhhhhhHhhhcccchHHHHHHHhccChhhh
Confidence 999999999999999999999999999999984 469999999999988887 79999999999999999999999
Q ss_pred cccHHHHHHHHHHhCCCCCCCCCCCch-hhhhccceEeEEecccccccCCCccccccCCCCc--cCHHHHHHHHHhccCC
Q 037957 632 AGSRVALQRRVLRLGKPPRRWKIPSFS-ESIKRKITEIHVQGRPLNCEIGMKSWFYGEDGEK--CGVEQLALQYYAGEGG 708 (841)
Q Consensus 632 ~~~r~aL~rRl~rL~k~~~r~k~~~~~-~~~~~~~~~~~I~g~~~~~~~g~k~~~~~~~~~~--~sVE~~vl~hY~~~g~ 708 (841)
++++++||||+.||.+.|++++.|.+. .....++++++|+||.+|+..+.|++|++++|+. ||||++|++||..++|
T Consensus 586 ~g~rlsLqrRalRLre~p~~~ktp~l~~nl~~n~i~~vtItgrl~ngr~~~k~vf~~Etgeav~csVEELAlqhY~~~sg 665 (854)
T KOG2143|consen 586 EGERLSLQRRALRLREMPADFKTPILIGNLEKNTITAVTITGRLGNGRINRKMVFDHETGEAVECSVEELALQHYLENSG 665 (854)
T ss_pred hhhHHHHHHHHHHHhcCchhcccchhhhhhhhCCCceEEEeccccCCcccceeEEeecCCccceeeHHHHHHHHHhhccC
Confidence 999999999999999999999888665 6677889999999999999999999999998876 9999999999998888
Q ss_pred CccEEEecchHHHHHHHHHhhhhhccC-CCccccCcccCCCCCCCCcccHHHHHHHHHHHHHHhhccchH---HHHHHHH
Q 037957 709 GWHGVHTESGIWLTIFGLLMWDILFSD-VPDVFRSRFQNAPLDLATDSFYIVRKNLIESQLQKIYDGMAE---EILITSW 784 (841)
Q Consensus 709 ~w~G~H~En~l~~tLFgLLfWDiIF~~-vpgaF~spfQ~~PlDL~t~~Fy~~R~~~Ie~rL~~i~~g~~~---~ll~~~~ 784 (841)
||+|+|.||++|.||||||||||||++ |||||+||||++||||+|++||.+|++.|++||+.|+++.-+ ..|...|
T Consensus 666 fwqGIH~EgStwlTLfgLlfwDIiF~D~VpgVfqs~fQ~aPlDL~TdSFy~sRketie~RLe~i~na~~e~li~~i~yiw 745 (854)
T KOG2143|consen 666 FWQGIHDEGSTWLTLFGLLFWDIIFADDVPGVFQSEFQDAPLDLSTDSFYSSRKETIEDRLEWIENAEQELLIENIRYIW 745 (854)
T ss_pred ccccccCcccHHHHHHHHHHHHHHhccCCchHHhhhhhcCCcccccchhhhhhhHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 999999999999999999999999987 999999999999999999999999999999999999998443 3356789
Q ss_pred HhhcCcccceeeCCC-CCHHHHHHHHHhhChHHHHHHHHHHHhhhhcCCCCCCCccCC
Q 037957 785 ESHVGTVCRGVNWDR-HSLSELRAAVTCIGGPCLAHLCRHLAQDYGSWSSGMPDLLIW 841 (841)
Q Consensus 785 ~~~~G~~~~~v~W~~-~~~e~L~~i~~clg~~~L~~i~r~L~~Dyr~~rsG~PDLilW 841 (841)
+.++|+.|++|+|++ +++|++.++++||||++|+.|||+|++|||++|||||||+||
T Consensus 746 e~Qrgt~crgvsW~rf~slE~l~~~v~Ciggp~La~icrhLAqDyRnsrsG~PDL~lW 803 (854)
T KOG2143|consen 746 ELQRGTTCRGVSWKRFMSLEDLVSFVQCIGGPALALICRHLAQDYRNSRSGFPDLTLW 803 (854)
T ss_pred HHhcCcchhccchhhhcCHHHHHHHHHhcCccHHHHHHHHHHHHhhhccCCCCceeee
Confidence 999999999999999 699999999999999999999999999999999999999999
|
|
| >PF08797 HIRAN: HIRAN domain; InterPro: IPR014905 The HIRAN protein (HIP116, Rad5p N-terminal) is found in the N-terminal regions of the SWI2/SNF2 proteins typified by HIP116 and Rad5p | Back alignment and domain information |
|---|
| >PF08774 VRR_NUC: VRR-NUC domain; InterPro: IPR014883 This entry contains proteins with the VRR-NUC domain | Back alignment and domain information |
|---|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
| >PF07498 Rho_N: Rho termination factor, N-terminal domain; InterPro: IPR011112 The Rho termination factor disengages newly transcribed RNA from its DNA template at certain, specific transcripts | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 841 | ||||
| 2l1i_A | 122 | Nmr Structure Of The Hltf Hiran Domain Length = 122 | 2e-04 |
| >pdb|2L1I|A Chain A, Nmr Structure Of The Hltf Hiran Domain Length = 122 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2l1i_A HLTF protein; hiran domain, transcription factor, DNA repair, transc regulation, transcription, structural genomics, structural consortium, SGC; NMR {Homo sapiens} Length = 122 | Back alignment and structure |
|---|
Score = 81.9 bits (202), Expect = 8e-19
Identities = 28/93 (30%), Positives = 46/93 (49%), Gaps = 5/93 (5%)
Query: 156 TLRTFIVGRRYSDEKEIKIGAHISLSRDPNNVKDPNAIKVFSADSGCCKVLGYLPKELSE 215
+LR +VG RY + ++L RDPNN D NAIKV + + +G+L KEL+
Sbjct: 13 SLRGHVVGLRYYTGV-VNNNEMVALQRDPNNPYDKNAIKVNNVNG---NQVGHLKKELAG 68
Query: 216 YLSPLMEKYSLSFEGFVISAPKHSLDV-VQIKI 247
L+ +M+ EG V ++ + + +
Sbjct: 69 ALAYIMDNKLAQIEGVVPFGANNAFTMPLHMTF 101
|
| >3k2y_A Uncharacterized protein LP_0118; nucleic acid binding,zinc ION binding, structural genomics, PSI-2, protein structure initiative; 2.40A {Lactobacillus plantarum} Length = 109 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 841 | |||
| 2l1i_A | 122 | HLTF protein; hiran domain, transcription factor, | 99.88 | |
| 3k2y_A | 109 | Uncharacterized protein LP_0118; nucleic acid bind | 99.82 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 81.07 |
| >2l1i_A HLTF protein; hiran domain, transcription factor, DNA repair, transc regulation, transcription, structural genomics, structural consortium, SGC; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=4.9e-25 Score=207.73 Aligned_cols=103 Identities=31% Similarity=0.418 Sum_probs=94.1
Q ss_pred cccccccceEEEEEeeeeeccCcccCCCCeEEEEeCCCCCCCCCceEEEecCCCccccccccccchhhhcccccccCCCc
Q 037957 148 TVDGMSEATLRTFIVGRRYSDEKEIKIGAHISLSRDPNNVKDPNAIKVFSADSGCCKVLGYLPKELSEYLSPLMEKYSLS 227 (841)
Q Consensus 148 ~~~~~~~~~~~~~IvG~~yy~~~~~~~ge~v~L~REP~N~~D~nAI~V~~~~g~~~~~lGyipr~~a~~la~l~D~g~~~ 227 (841)
..+....|.++++|||++||++ .+++|+.|.|+|||+||||+|||+|.|.+| .+||||||.+|++++|+||+|.+.
T Consensus 5 ~~~~~l~g~~~~~I~G~ry~~g-~l~~G~~l~L~REp~N~yD~nAI~V~~~~g---~~vGYvPr~~a~~la~lmD~g~~~ 80 (122)
T 2l1i_A 5 EVDSVLFGSLRGHVVGLRYYTG-VVNNNEMVALQRDPNNPYDKNAIKVNNVNG---NQVGHLKKELAGALAYIMDNKLAQ 80 (122)
T ss_dssp HHTTCCCCBCCCCBCCSTTTTS-CCCSSSCEECCCCTTCTTHHHHHHCCCTTB---GGGGGHHHHHHHHHHHHTTSCCEE
T ss_pred cceeEEEeEEEEEEEEEecccC-CCCCCCEEEEEECCCCCCChhHEEEECCCC---CEEEEecHHHHHHHHhhccCCeEE
Confidence 3456777999999999999999 799999999999999999999999999999 999999999999999999999999
Q ss_pred eeEEEeecCCCCCceeEEEEEEEeccCC
Q 037957 228 FEGFVISAPKHSLDVVQIKITYHKIESD 255 (841)
Q Consensus 228 ~~g~v~~~~~~~~~~~pi~i~~~~~~s~ 255 (841)
++|+|+. ...+.++|||+|++|+++++
T Consensus 81 veg~v~~-g~~~~~~~pi~l~~~~~~~~ 107 (122)
T 2l1i_A 81 IEGVVPF-GANNAFTMPLHMTFWGKEEN 107 (122)
T ss_dssp EEEECCT-TTTTTCCCCCEEEEEECHHH
T ss_pred EEEEEec-CCCCCCceeEEEEEEeChhH
Confidence 9999973 24578999999999997654
|
| >3k2y_A Uncharacterized protein LP_0118; nucleic acid binding,zinc ION binding, structural genomics, PSI-2, protein structure initiative; 2.40A {Lactobacillus plantarum} | Back alignment and structure |
|---|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 841 | |||
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 86.73 | |
| d1jeqa1 | 51 | DNA binding C-terminal domain of ku70 {Human (Homo | 82.6 |
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=86.73 E-value=2.5 Score=38.97 Aligned_cols=111 Identities=13% Similarity=-0.017 Sum_probs=67.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhhhcccccccccchhhhhcccccccc-CchHHHH---------
Q 037957 492 LCDLLAYEEAIELAQIMDQSLDENNIELVLRCIMIAESRMSSSSCKAVQSITSELANTFHSCF-SASWVYS--------- 561 (841)
Q Consensus 492 R~dl~~Y~~A~~l~~~l~~~l~~~~~~~l~~~~~~a~~r~~~~~~~~~~~~~~~~~~~~l~rF-~~~~v~~--------- 561 (841)
.-|+..|+......... .+.+.++...+++..|...+... ++-.+ ...|++.
T Consensus 5 ~~D~~~f~~~~~~g~~~---~~~g~~e~A~~~~~~AL~l~rG~---------------~l~~~~~~~w~~~~r~~l~~~~ 66 (179)
T d2ff4a2 5 TCDLGRFVAEKTAGVHA---AAAGRFEQASRHLSAALREWRGP---------------VLDDLRDFQFVEPFATALVEDK 66 (179)
T ss_dssp GBHHHHHHHHHHHHHHH---HHTTCHHHHHHHHHHHHTTCCSS---------------TTGGGTTSTTHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHH---HHCCCHHHHHHHHHHHHhhCccc---------------ccccCcchHHHHHHHHHHHHHH
Confidence 34677777655554433 34667777766666554433211 11111 1234432
Q ss_pred -HHHHHHHHHHhhhhchHHHHHHHHHHhcCCCCCCccchhHHHHHHhhhhcCCchHHHHHHHh
Q 037957 562 -KVVLLGISFLEREQRFNDAINLLRRLLSCFTCDSRRGYWTLRLSIDLEHMGCPSESLSVAEG 623 (841)
Q Consensus 562 -ril~~~~~~LER~k~~~~A~~ll~~Ll~~~~~~~rRG~W~~RLal~Lehl~~~~eAl~l~e~ 623 (841)
..+...+..+.+.++|++|+..++..+...+.. .. -|.++...+.++|++++|+..-++
T Consensus 67 ~~a~~~la~~~~~~g~~~~Al~~~~~al~~~P~~-e~--~~~~l~~al~~~Gr~~eAl~~y~~ 126 (179)
T d2ff4a2 67 VLAHTAKAEAEIACGRASAVIAELEALTFEHPYR-EP--LWTQLITAYYLSDRQSDALGAYRR 126 (179)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-HH--HHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCcc-HH--HHHHHHHHHHHhcCHHHHHHHHHH
Confidence 334556788899999999999999998732222 22 255566668899999999866444
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| >d1jeqa1 a.140.2.1 (A:559-609) DNA binding C-terminal domain of ku70 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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