Citrus Sinensis ID: 037961

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260--
Protein Sequence
MAELFIKQANLYAVARPNYPKELFKLIASKTPKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKLPNIRYQLTPTMSITELEQNVATQSSVDLVTIASALHWFDLPQFYKQVKWVLKKPSGVIAAWTYTMPEINESVGAVFKPFDTIDCNPFWAPQRKLVDKKYMSIDFPFEPVDGYENTGPFDQFVVEKMMDLDDYFKFIRSCSAYQKAKDKGVELLTENVMEKFKAAWNEDGQSQKIARFRVYLRIGKVGN
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHcccccHHHHHHHHHHccccccEEEEccccHHHHHHHHHcccEEEEEcccHHHHHHHHccccccccccccccHHHHcccccccccccEEEEEcccccccHHHHHHHHHHHHccccEEEEEEccccccccHHHHHHHcccccccccccccccHHHHHHHccccccccccccccccccccEEEEEEEEEcHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccccEEEEEEEEEEEEEEEcc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHcccccHHHHHHHHHHcccccEEEEEcccHHHHHHHHHHHcccEEEEcccHHHHHHHccccccEEEEcccccHHHHHHcccccccccEEHHHHHHHHccHHHHHHHHHHHHcccccEEEEEEcccccccHHHHHHHHHHHHHHccccccHHHHHHHcccccccccccccccccccccccccccEEEccHHHHHHHHHcHHHHHHHHHcccccHHHHHHHHHHHHHcccccEEEEEEEEEEEEEEEEcc
Coil and Loop (DISEMBL)
MAELFIKQANLYAVARPNYPKELFKLIAsktpkrnlawdvgtrsGQAAASLAQIYQHViatdtspkqlkfaiklpniryqltptmSITELEQNVATQSSVDLVTIASAlhwfdlpqfYKQVKWVLKKPSGVIAAWTYtmpeinesvgavfkpfdtidcnpfwapqrklvdkkymsidfpfepvdgyentgpfDQFVVEKMMDLDDYFKFIRSCSAYQKAKDKGVELLTENVMEKFKAAwnedgqsqkIARFRVYLRIGKVGN
Flexible Loop (DISEMBL)
MAELFIKQANLYAVARPNYPKELFKLIASKTPKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKLPNIRYQLTPTMSITELEQNVATQSSVDLVTIASALHWFDLPQFYKQVKWVLKKPSGVIAAWTYTMPEINESVGAVFKPFDTIDCNPFWAPQRKLVDKKYMSIDFPFEPVDGYENTGPFDQFVVEKMMDLDDYFKFIRSCSAYQKAKDKGVELLTENVMEKFKaawnedgqsqkiarFRVYLRIGKVGN
Low Complexity Region (SEG)
MAELFIKQANLYAVARPNYPKELFKLIASKTPKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKLPNIRYQLTPTMSITELEQNVATQSSVDLVTIASALHWFDLPQFYKQVKWVLKKPSGVIAAWTYTMPEINESVGAVFKPFDTIDCNPFWAPQRKLVDKKYMSIDFPFEPVDGYENTGPFDQFVVEKMMDLDDYFKFIRSCSAYQKAKDKGVELLTENVMEKFKAAWNEDGQSQKIARFRVYLRIGKVGN
Disordered region (IsUnstruct)
***LFIKQANLYAVARPNYPKELFKLIASKTPKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKLPNIRYQLTPTMSITELEQNVATQSSVDLVTIASALHWFDLPQFYKQVKWVLKKPSGVIAAWTYTMPEINESVGAVFKPFDTIDCNPFWAPQRKLVDKKYMSIDFPFEPVDGYENTGPFDQFVVEKMMDLDDYFKFIRSCSAYQKAKDKGVELLTENVMEKFKAAWNEDGQSQKIARFRVYLRIG****
Disordered Region (DISOPRED)
*AELFIKQANLYAVARPNYPKELFKLIASKTPKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKLPNIRYQLTPTMSITELEQNVATQSSVDLVTIASALHWFDLPQFYKQVKWVLKKPSGVIAAWTYTMPEINESVGAVFKPFDTIDCNPFWAPQRKLVDKKYMSIDFPFEPVDGYENTGPFDQFVVEKMMDLDDYFKFIRSCSAYQKAKDKGVELLTENVMEKFKAAWNEDGQSQKIARFRVYLRIGKVG*
Disordered Region (DISEMBL)
MAELFIKQANLYAVARPNYPKELFKLIASKTPKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKLPNIRYQLTPTMSITELEQNVATQSSVDLVTIASALHWFDLPQFYKQVKWVLKKPSGVIAAWTYTMPEINESVGAVFKPFDTIDCNPFWAPQRKLVDKKYMSIDFPFEPVDGYENTGPFDQFVVEKMMDLDDYFKFIRSCSAYQKAKDKGVELLTENVMEKFKAAWNEDGQSQKIARFRVYLRIGKVGN
Disordered Region (DISPRO)
*AELFIKQANLYAVARPNYPKELFKLIASKTPKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKLPNIRYQLTPTMSITELEQNVATQSSVDLVTIASALHWFDLPQFYKQVKWVLKKPSGVIAAWTYTMPEINESVGAVFKPFDTIDCNPFWAPQRKLVDKKYMSIDFPFEPVDGYENTGPFDQFVVEKMMDLDDYFKFIRSCSAYQKAKDKGVELLTENVMEKFKAAWNEDGQSQKIARFRVYLRIGKVGN
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAELFIKQANLYAVARPNYPKELFKLIASKTPKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKLPNIRYQLTPTMSITELEQNVATQSSVDLVTIASALHWFDLPQFYKQVKWVLKKPSGVIAAWTYTMPEINESVGAVFKPFDTIDCNPFWAPQRKLVDKKYMSIDFPFEPVDGYENTGPFDQFVVEKMMDLDDYFKFIRSCSAYQKAKDKGVELLTENVMEKFKAAWNEDGQSQKIARFRVYLRIGKVGN
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	262	2.2.26 [Sep-21-2011]
Q55EX9	263	Putative methyltransferas	no	no	0.877	0.874	0.329	2e-23
P38892	291	Probable S-adenosylmethio	yes	no	0.469	0.422	0.302	6e-08
A6ZRD1	299	Trans-aconitate 3-methylt	N/A	no	0.526	0.461	0.251	1e-05
P32643	299	Trans-aconitate 3-methylt	no	no	0.526	0.461	0.251	2e-05
P36566	261	Protein SmtA OS=Escherich	N/A	no	0.606	0.609	0.244	4e-05
P65349	243	Uncharacterized methyltra	yes	no	0.461	0.497	0.274	0.0004
P65348	243	Uncharacterized methyltra	yes	no	0.461	0.497	0.274	0.0004

>sp|Q55EX9|Y8948_DICDI Putative methyltransferase DDB_G0268948 OS=Dictyostelium discoideum GN=DDB_G0268948 PE=1 SV=2

 Score =  109 bits (273), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 85/258 (32%), Positives = 133/258 (51%), Gaps = 28/258 (10%)

Query: 12  YAVARPNYPKELFKLIASKT-PKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKF 70
           Y   RP Y  EL+ +I S    KR+LA D+G  SGQA   LA+ ++ VI  + S  Q++ 
Sbjct: 22  YKNFRPTYNDELYSIIDSHCDEKRDLAIDIGAGSGQATVRLAKYFKKVIGFEPSQGQIEN 81

Query: 71  AIKLPNIRYQLTPTMSITELEQNVATQSSVDLVTIASALHWFDLPQFYKQVKWVLKKPSG 130
           A K  N+ Y+L+    I           SVDL+T+A A HWF+LP FY++ K +L++ +G
Sbjct: 82  AEKTDNVEYRLSAAEKID------LPSGSVDLITVAQAAHWFNLPVFYEESKRLLRE-NG 134

Query: 131 VIAAWTYTMPEI--NESVGAVFKP--FDTIDCNPFWAPQRKLVDKKYMSIDFPFEPVDGY 186
            +  W+Y + +I  N     V +   ++TI  + +WAP+RK +D +Y+ I   FE     
Sbjct: 135 SLIIWSYGLMKITNNNDAQVVHEKHYYETI-GDQYWAPERKYIDDEYVDIKPSFENTTRK 193

Query: 187 ENTGPFDQFVVEKMMDLDDYFKFIRSCSAYQ---KAKDKGV-ELLTENVMEKFKAAWNED 242
             + P       K M ++D   +  S S Y    KA +K V   + E +++ +K     D
Sbjct: 194 TISLP-------KSMSINDMIGYYSSWSGYAAFIKAGNKDVLPEIKETLLKAYKTT---D 243

Query: 243 GQSQKI-ARFRVYLRIGK 259
           G S+ I   F VY+ + K
Sbjct: 244 GDSKLIDVNFPVYMILSK 261

Dictyostelium discoideum (taxid: 44689)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: -

>sp|P38892|CRG1_YEAST Probable S-adenosylmethionine-dependent methyltransferase CRG1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CRG1 PE=1 SV=1

 Score = 58.2 bits (139), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 42/139 (30%), Positives = 64/139 (46%), Gaps = 16/139 (11%)

Query: 12  YAVARPNYPKELFKLIA--SKTPKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLK 69
           Y   RP+YP  L   I    K  +++L  D+G  +G+A   +   ++ VI  D S   L 
Sbjct: 16  YNNVRPSYPLSLVNEIMKFHKGTRKSLV-DIGCGTGKATFVVEPYFKEVIGIDPSSAMLS 74

Query: 70  FAIKLPN-------IRYQLTPTMSITELEQNVATQSSVDLVTIASALHWFDLPQFYKQVK 122
            A K  N       IR+   P   ++ +        SVD+V  A A+HW +L + ++QV 
Sbjct: 75  IAEKETNERRLDKKIRFINAPGEDLSSIRP-----ESVDMVISAEAIHWCNLERLFQQVS 129

Query: 123 WVLKKPSGVIAAWTYTMPE 141
            +L+   G  A W Y  PE
Sbjct: 130 SILRS-DGTFAFWFYIQPE 147

Probable S-adenosylmethionine-dependent methyltransferase which mediates cantharidin resistance.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|A6ZRD1|TMT1_YEAS7 Trans-aconitate 3-methyltransferase OS=Saccharomyces cerevisiae (strain YJM789) GN=TMT1 PE=3 SV=1

 Score = 50.1 bits (118), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 69/159 (43%), Gaps = 21/159 (13%)

Query: 22  ELFKLIAS-KTPKRNLAWDVGTRSGQAAASLAQI---YQHVIATDTSPKQLKFA--IK-- 73
           + +K+I      +R L  DVG   G A   +AQ    ++ +I +D S   +K A  IK  
Sbjct: 24  DFYKMIDEYHDGERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEG 83

Query: 74  ----LPNIRYQLTPTMSITELEQNVATQSSVDLVTIASALHWFDLPQFYKQVKWVLKKPS 129
                 N+ ++++ +     L  +   +  +D++T     HWFD  +F +     L+K  
Sbjct: 84  SPDTYKNVSFKISSSDDFKFLGADSVDKQKIDMITAVECAHWFDFEKFQRSAYANLRK-D 142

Query: 130 GVIAAWTYT------MPEINESVGAVFKPFDTIDCNPFW 162
           G IA W Y        PE ++ +  V  P+      P+W
Sbjct: 143 GTIAIWGYADPIFPDYPEFDDLMIEV--PYGKQGLGPYW 179

Catalyzes the S-adenosylmethionine monomethyl esterification of trans-aconitate and 3-isopropylmalate at high affinity and of other molecules like cis-aconitate, isocitrate, and citrate at lower velocities and affinities. The function of trans-aconitate methylation appears to be in reducing the toxicity of this spontaneous breakdown product of cis-aconitate. The role of 3-isopropylmalate methylation is unclear but may represent a metabolic branch at 3-isopropylmalate, where some of the material is taken in the pathway leading to leucine and some is taken in a pathway to the 3-isopropylmalate methyl ester, a molecule that provides a signal to switch from vegetative to invasive growth in response to amino acid starvation.

Saccharomyces cerevisiae (strain YJM789) (taxid: 307796)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 4

EC: 5

>sp|P32643|TMT1_YEAST Trans-aconitate 3-methyltransferase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TMT1 PE=1 SV=1

 Score = 50.1 bits (118), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 69/159 (43%), Gaps = 21/159 (13%)

Query: 22  ELFKLIAS-KTPKRNLAWDVGTRSGQAAASLAQI---YQHVIATDTSPKQLKFA--IK-- 73
           + +K+I      +R L  DVG   G A   +AQ    ++ +I +D S   +K A  IK  
Sbjct: 24  DFYKMIDEYHDGERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEG 83

Query: 74  ----LPNIRYQLTPTMSITELEQNVATQSSVDLVTIASALHWFDLPQFYKQVKWVLKKPS 129
                 N+ ++++ +     L  +   +  +D++T     HWFD  +F +     L+K  
Sbjct: 84  SPDTYKNVSFKISSSDDFKFLGADSVDKQKIDMITAVECAHWFDFEKFQRSAYANLRK-D 142

Query: 130 GVIAAWTYT------MPEINESVGAVFKPFDTIDCNPFW 162
           G IA W Y        PE ++ +  V  P+      P+W
Sbjct: 143 GTIAIWGYADPIFPDYPEFDDLMIEV--PYGKQGLGPYW 179

Catalyzes the S-adenosylmethionine monomethyl esterification of trans-aconitate and 3-isopropylmalate at high affinity and of other molecules like cis-aconitate, isocitrate, and citrate at lower velocities and affinities. The function of trans-aconitate methylation appears to be in reducing the toxicity of this spontaneous breakdown product of cis-aconitate. The role of 3-isopropylmalate methylation is unclear but may represent a metabolic branch at 3-isopropylmalate, where some of the material is taken in the pathway leading to leucine and some is taken in a pathway to the 3-isopropylmalate methyl ester, a molecule that provides a signal to switch from vegetative to invasive growth in response to amino acid starvation.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 4

EC: 5

>sp|P36566|SMTA_ECOLI Protein SmtA OS=Escherichia coli (strain K12) GN=smtA PE=1 SV=2

 Score = 48.9 bits (115), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 41/168 (24%), Positives = 73/168 (43%), Gaps = 9/168 (5%)

Query: 21  KELFKLIASKTPKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKLPNIRYQ 80
           ++L +++A   P++    D G   GQ A  +A+    VI  D S + +  A +    +  
Sbjct: 32  QDLDRVLAEMGPQKLRVLDAGGGEGQTAIKMAERGHQVILCDLSAQMIDRAKQAAEAKGV 91

Query: 81  LTPTMSITELEQNVAT--QSSVDLVTIASALHWFDLPQFYKQVKWVLKKPSGVIAAWTYT 138
                 I    Q+VA+  ++ VDL+   + L W   P+   Q  W + +P GV++   Y 
Sbjct: 92  SDNMQFIHCAAQDVASHLETPVDLILFHAVLEWVADPRSVLQTLWSVLRPGGVLSLMFYN 151

Query: 139 MPEINESVGAVFKPFDTIDCNPFWAPQRKLVDKKYMSIDFPFEPVDGY 186
              +      V   FD +       P++K   K+ +S D+P +P   Y
Sbjct: 152 AHGLLMH-NMVAGNFDYVQAG---MPKKK---KRTLSPDYPRDPAQVY 192

Escherichia coli (strain K12) (taxid: 83333)

>sp|P65349|Y3374_MYCBO Uncharacterized methyltransferase Mb3374 OS=Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97) GN=Mb3374 PE=3 SV=1

 Score = 45.4 bits (106), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 36/131 (27%), Positives = 57/131 (43%), Gaps = 10/131 (7%)

Query: 1   MAELFIKQANLYAVARPNYPKELFKLIASKTPKRNLAWDVGTRSGQAAASLAQIYQHVIA 60
           M+  F      Y   RP+YP E    +     +R L  D+G  +G+    L +    V+A
Sbjct: 8   MSLSFGSAVGAYERGRPSYPPEAIDWLLPAAARRVL--DLGAGTGKLTTRLVERGLDVVA 65

Query: 61  TDTSPKQLKFAIKLPNIRYQLTPTMSITELEQNVATQ-SSVDLVTIASALHWFDLPQFYK 119
            D  P+ L        +R  L  T+++    + +    +SVD V +A A HW D  +   
Sbjct: 66  VDPIPEMLDV------LRAALPQTVALLGTAEEIPLDDNSVDAVLVAQAWHWVDPARAIP 119

Query: 120 QVKWVLKKPSG 130
           +V  VL +P G
Sbjct: 120 EVARVL-RPGG 129

Mycobacterium bovis (taxid: 1765)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|P65348|Y3342_MYCTU Uncharacterized methyltransferase Rv3342/MT3445 OS=Mycobacterium tuberculosis GN=Rv3342 PE=3 SV=1

 Score = 45.4 bits (106), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 36/131 (27%), Positives = 57/131 (43%), Gaps = 10/131 (7%)

Query: 1   MAELFIKQANLYAVARPNYPKELFKLIASKTPKRNLAWDVGTRSGQAAASLAQIYQHVIA 60
           M+  F      Y   RP+YP E    +     +R L  D+G  +G+    L +    V+A
Sbjct: 8   MSLSFGSAVGAYERGRPSYPPEAIDWLLPAAARRVL--DLGAGTGKLTTRLVERGLDVVA 65

Query: 61  TDTSPKQLKFAIKLPNIRYQLTPTMSITELEQNVATQ-SSVDLVTIASALHWFDLPQFYK 119
            D  P+ L        +R  L  T+++    + +    +SVD V +A A HW D  +   
Sbjct: 66  VDPIPEMLDV------LRAALPQTVALLGTAEEIPLDDNSVDAVLVAQAWHWVDPARAIP 119

Query: 120 QVKWVLKKPSG 130
           +V  VL +P G
Sbjct: 120 EVARVL-RPGG 129

Mycobacterium tuberculosis (taxid: 1773)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	262
224090001	263	predicted protein [Populus trichocarpa]	0.996	0.992	0.714	1e-107
118488865	263	unknown [Populus trichocarpa x Populus d	0.996	0.992	0.711	1e-105
255581373	265	S-adenosylmethionine-dependent methyltra	0.996	0.984	0.665	3e-99
428230426	263	S-adenosylmethionine-dependent methyltra	0.996	0.992	0.661	1e-97
359482211	265	PREDICTED: putative methyltransferase DD	0.992	0.981	0.634	6e-92
388515407	261	unknown [Lotus japonicus]	0.988	0.992	0.623	2e-91
356504712	286	PREDICTED: LOW QUALITY PROTEIN: putative	0.927	0.849	0.653	5e-88
357509479	261	Methyltransferase, putative [Medicago tr	0.988	0.992	0.623	1e-87
255639335	286	unknown [Glycine max]	0.927	0.849	0.648	1e-87
297739908	530	unnamed protein product [Vitis vinifera]	0.988	0.488	0.603	9e-86

>gi|224090001|ref|XP_002308901.1| predicted protein [Populus trichocarpa] gi|222854877|gb|EEE92424.1| predicted protein [Populus trichocarpa]

 Score =  392 bits (1006), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 188/263 (71%), Positives = 221/263 (84%), Gaps = 2/263 (0%)

Query: 1   MAELFIKQANLYAVARPNYPKELFKLIASKTPKRNLAWDVGTRSGQAAASLAQIYQHVIA 60
           MAELF++QA  YA  RP+YP+ELF+ IASKTP R+L WDVGT SGQAA SLA IY++VI 
Sbjct: 1   MAELFVEQAKQYAETRPSYPQELFEFIASKTPSRDLVWDVGTGSGQAARSLAGIYKNVIG 60

Query: 61  TDTSPKQLKFAIKLPNIRYQLTP-TMSITELEQNVATQSSVDLVTIASALHWFDLPQFYK 119
           TDTS KQL+FA KLPN+RYQ TP  MS+ ELEQ V+TQSSVDLVTIA A+HWFDLP FY+
Sbjct: 61  TDTSLKQLEFAPKLPNVRYQQTPPVMSMGELEQTVSTQSSVDLVTIAQAMHWFDLPSFYQ 120

Query: 120 QVKWVLKKPSGVIAAWTYTMPEINESVGAVFKPFDTIDCNPFWAPQRKLVDKKYMSIDFP 179
           QVKWVLKKP GVIAAW YT+PE+N+SV +VF PF +ID +P+W PQRKLVD KYMSIDFP
Sbjct: 121 QVKWVLKKPHGVIAAWCYTIPEVNDSVDSVFNPFYSIDSDPYWEPQRKLVDNKYMSIDFP 180

Query: 180 FEPVDGYENTGPFDQFVVEKMMDLDDYFKFIRSCSAYQKAKDKGVELLTENVMEKFKAAW 239
           FEPV+G +NTGPF +FV EKMMDLD+YF +IRS SAYQ AK KGVELL ++V+E FK AW
Sbjct: 181 FEPVEGTDNTGPF-KFVTEKMMDLDEYFTYIRSWSAYQTAKAKGVELLRDDVIESFKRAW 239

Query: 240 NEDGQSQKIARFRVYLRIGKVGN 262
           NEDG  QK+ +F V+L+IGKVGN
Sbjct: 240 NEDGHGQKVVKFPVHLKIGKVGN 262

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118488865|gb|ABK96242.1| unknown [Populus trichocarpa x Populus deltoides]

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 187/263 (71%), Positives = 219/263 (83%), Gaps = 2/263 (0%)

Query: 1   MAELFIKQANLYAVARPNYPKELFKLIASKTPKRNLAWDVGTRSGQAAASLAQIYQHVIA 60
           MAELF++QA  YA  RP YP+ELF+ IASKTP R+L WDVGT SGQAA SLA IY++VI 
Sbjct: 1   MAELFVEQAKQYAETRPIYPQELFESIASKTPSRDLVWDVGTGSGQAARSLAGIYKNVIG 60

Query: 61  TDTSPKQLKFAIKLPNIRYQLTP-TMSITELEQNVATQSSVDLVTIASALHWFDLPQFYK 119
           TDTS KQL+FA KLPN+ YQ TP  MS+ ELEQ V+TQSSVDLVTIA A+HWFDLP FY+
Sbjct: 61  TDTSLKQLEFAPKLPNVNYQQTPPVMSMGELEQTVSTQSSVDLVTIAQAMHWFDLPSFYQ 120

Query: 120 QVKWVLKKPSGVIAAWTYTMPEINESVGAVFKPFDTIDCNPFWAPQRKLVDKKYMSIDFP 179
           QVKWVLKKP GVIAAW YT+PE+N+SV +VF PF +ID +P+W PQRKLVD KYMSIDFP
Sbjct: 121 QVKWVLKKPHGVIAAWCYTIPEVNDSVDSVFNPFYSIDSDPYWEPQRKLVDNKYMSIDFP 180

Query: 180 FEPVDGYENTGPFDQFVVEKMMDLDDYFKFIRSCSAYQKAKDKGVELLTENVMEKFKAAW 239
           FEPV+G +NTGPF +FV EKMMDLD+YF +IRS SAYQ AK KGVELL ++V+E FK AW
Sbjct: 181 FEPVEGTDNTGPF-KFVTEKMMDLDEYFTYIRSWSAYQTAKAKGVELLRDDVIESFKRAW 239

Query: 240 NEDGQSQKIARFRVYLRIGKVGN 262
           NEDG  QK+ +F V+L+IGKVGN
Sbjct: 240 NEDGHGQKVVKFPVHLKIGKVGN 262

Source: Populus trichocarpa x Populus deltoides

Species: Populus trichocarpa x Populus deltoides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255581373|ref|XP_002531495.1| S-adenosylmethionine-dependent methyltransferase, putative [Ricinus communis] gi|223528882|gb|EEF30882.1| S-adenosylmethionine-dependent methyltransferase, putative [Ricinus communis]

 Score =  367 bits (942), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 175/263 (66%), Positives = 216/263 (82%), Gaps = 2/263 (0%)

Query: 1   MAELFIKQANLYAVARPNYPKELFKLIASKTPKRNLAWDVGTRSGQAAASLAQIYQHVIA 60
           MAELFIKQA  YA  RPNYP+ELF+ IASKTP + LAWDVGT SGQAA SLA+IY++VIA
Sbjct: 1   MAELFIKQAKQYAEGRPNYPQELFQFIASKTPGKGLAWDVGTGSGQAAQSLAEIYKNVIA 60

Query: 61  TDTSPKQLKFAIKLPNIRYQLTP-TMSITELEQNVATQSSVDLVTIASALHWFDLPQFYK 119
           TDTS KQL+FA KLPN+RYQ TP  + + E EQ ++++SSVDLVTIA A+HWFDLP FY+
Sbjct: 61  TDTSMKQLEFAPKLPNVRYQRTPPVIPMNEFEQYISSESSVDLVTIAQAIHWFDLPAFYQ 120

Query: 120 QVKWVLKKPSGVIAAWTYTMPEINESVGAVFKPFDTIDCNPFWAPQRKLVDKKYMSIDFP 179
           QVKWVLKKP GVIAAW YT+PE+NESV +VF PF TID  PFW+  RK VD KY +I FP
Sbjct: 121 QVKWVLKKPHGVIAAWCYTVPEVNESVDSVFHPFYTIDSEPFWSSGRKWVDDKYTNIHFP 180

Query: 180 FEPVDGYENTGPFDQFVVEKMMDLDDYFKFIRSCSAYQKAKDKGVELLTENVMEKFKAAW 239
           FEPV+G ++TGP  +FV+EK+M LDDYF ++RS SAYQ AK++GV+LL + V ++FK AW
Sbjct: 181 FEPVEGVDHTGP-HRFVIEKVMSLDDYFTYLRSWSAYQTAKERGVDLLKDEVTKEFKNAW 239

Query: 240 NEDGQSQKIARFRVYLRIGKVGN 262
           N+DG+ +K+ +F +YLRIGKVGN
Sbjct: 240 NKDGEDKKVVKFPIYLRIGKVGN 262

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|428230426|gb|AFY98896.1| S-adenosylmethionine-dependent methyltransferase [Jatropha curcas]

 Score =  362 bits (929), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 174/263 (66%), Positives = 216/263 (82%), Gaps = 2/263 (0%)

Query: 1   MAELFIKQANLYAVARPNYPKELFKLIASKTPKRNLAWDVGTRSGQAAASLAQIYQHVIA 60
           MA+LFIKQA  YA ARP+YPKELF+ IASKTP ++LAWDVGT SGQA  SLA+I+++VIA
Sbjct: 1   MAQLFIKQAKQYAEARPSYPKELFQFIASKTPIKDLAWDVGTGSGQAVHSLAEIFKNVIA 60

Query: 61  TDTSPKQLKFAIKLPNIRYQLTP-TMSITELEQNVATQSSVDLVTIASALHWFDLPQFYK 119
           TDTS KQL+FA KLPN+RYQ TP T+ + E EQ ++ +SSVDLVTIA A+HWFDLP+FY 
Sbjct: 61  TDTSSKQLEFAPKLPNVRYQQTPPTIPMEEFEQYISIESSVDLVTIAQAMHWFDLPKFYH 120

Query: 120 QVKWVLKKPSGVIAAWTYTMPEINESVGAVFKPFDTIDCNPFWAPQRKLVDKKYMSIDFP 179
           QVKWVLKKP GVIAAW YT+PE+N+S+ +VFKPF  ID  P+W   RK VD KY +I FP
Sbjct: 121 QVKWVLKKPHGVIAAWCYTVPEVNDSIDSVFKPFYAIDSEPYWEAGRKWVDDKYQNIYFP 180

Query: 180 FEPVDGYENTGPFDQFVVEKMMDLDDYFKFIRSCSAYQKAKDKGVELLTENVMEKFKAAW 239
           FEPV+G ++TGP  +FV+E++M LDD+F ++RS SAYQ AK+KGV+LL  +V+EKFK AW
Sbjct: 181 FEPVEGSDDTGPV-KFVIERVMRLDDFFTYLRSWSAYQTAKEKGVDLLRNDVIEKFKNAW 239

Query: 240 NEDGQSQKIARFRVYLRIGKVGN 262
           NEDG  +K+ +F VYLRIGKVGN
Sbjct: 240 NEDGSDEKVVKFPVYLRIGKVGN 262

Source: Jatropha curcas

Species: Jatropha curcas

Genus: Jatropha

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359482211|ref|XP_003632729.1| PREDICTED: putative methyltransferase DDB_G0268948-like [Vitis vinifera] gi|297739907|emb|CBI30089.3| unnamed protein product [Vitis vinifera]

 Score =  343 bits (879), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 167/263 (63%), Positives = 207/263 (78%), Gaps = 3/263 (1%)

Query: 1   MAELFIKQANLYAVARPNYPKELFKLIASKTPKRNLAWDVGTRSGQAAASLAQIYQHVIA 60
           MAELF +QA  Y+ ARP+YP ELF+ IASKTP R+L WDVGT SGQAA SLA IY++VI 
Sbjct: 1   MAELFTEQAKQYSEARPSYPPELFQFIASKTPDRDLVWDVGTGSGQAAVSLAGIYKNVIG 60

Query: 61  TDTSPKQLKFAIKLPNIRYQLT-PTMSITELEQNVATQSSVDLVTIASALHWFDLPQFYK 119
           T+TS  QL+FA KLPNIRYQ T P M+I +L+ +VA QSSVDLVTIA A+HWFDLP+FY+
Sbjct: 61  TETSQSQLEFAAKLPNIRYQYTSPVMTIADLQASVAAQSSVDLVTIAQAMHWFDLPKFYQ 120

Query: 120 QVKWVLKKPSGVIAAWTYTMPEINESVGAVFKPFDTIDCNPFWAPQRKLVDKKYMSIDFP 179
           QV+WVLKKP GVIAAW YT+PE+NESV  VF+ F   D  P+W   R LVD KY SI+FP
Sbjct: 121 QVEWVLKKPHGVIAAWCYTVPEVNESVDLVFERF-YADSKPYWDSARDLVDDKYRSIEFP 179

Query: 180 FEPVDGYENTGPFDQFVVEKMMDLDDYFKFIRSCSAYQKAKDKGVELLTENVMEKFKAAW 239
           F+PVDG ++TGPF +F  E++MDL+ YF +IRS S+YQ AK +GVELL  +V+E F+ AW
Sbjct: 180 FKPVDGEDDTGPF-RFKTERIMDLEAYFTYIRSWSSYQTAKKEGVELLRNDVIEDFERAW 238

Query: 240 NEDGQSQKIARFRVYLRIGKVGN 262
           N DG+ +K+  + +YLRIGKVGN
Sbjct: 239 NRDGKGKKVVTYPIYLRIGKVGN 261

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388515407|gb|AFK45765.1| unknown [Lotus japonicus]

 Score =  341 bits (875), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 164/263 (62%), Positives = 203/263 (77%), Gaps = 4/263 (1%)

Query: 1   MAELFIKQANLYAVARPNYPKELFKLIASKTPKRNLAWDVGTRSGQAAASLAQIYQHVIA 60
           M+ LF+KQA  YA ARP+YP +LF+ IASKTP  NLAWDV T SGQAA SLA++YQ+VIA
Sbjct: 1   MSNLFVKQAKQYAGARPSYPPQLFQFIASKTPSHNLAWDVATGSGQAAKSLAELYQNVIA 60

Query: 61  TDTSPKQLKFAIKLPNIRYQLTP-TMSITELEQNVATQSSVDLVTIASALHWFDLPQFYK 119
           TD S KQL+FA KLPN+RYQ TP TMSI E+EQ VA Q ++DLVTIA  LHWFDLP FY 
Sbjct: 61  TDASEKQLEFATKLPNVRYQHTPSTMSIAEVEQKVAPQGTIDLVTIAQGLHWFDLPNFYA 120

Query: 120 QVKWVLKKPSGVIAAWTYTMPEINESVGAVFKPFDTIDCNPFWAPQRKLVDKKYMSIDFP 179
           QV WVLKKP GVIAAW+Y +P ++++V +V   F   D  P+W   R+LV+  Y +IDFP
Sbjct: 121 QVNWVLKKPHGVIAAWSYNLPRLSDAVDSVLDQFYGSDTKPYWDQARRLVENNYRTIDFP 180

Query: 180 FEPVDGYENTGPFDQFVVEKMMDLDDYFKFIRSCSAYQKAKDKGVELLTENVMEKFKAAW 239
           FEPVDG ++TGPF +FV E +MD DD+  +I+S S YQ AK+KGVELL E+V+EKFK AW
Sbjct: 181 FEPVDGADHTGPF-EFVTETVMDFDDFLTYIKSWSVYQTAKEKGVELLGEDVVEKFKLAW 239

Query: 240 NEDGQSQKIARFRVYLRIGKVGN 262
            EDG  QK+A++ +YLRIGKV +
Sbjct: 240 GEDG--QKVAKYPIYLRIGKVSD 260

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356504712|ref|XP_003521139.1| PREDICTED: LOW QUALITY PROTEIN: putative methyltransferase DDB_G0268948-like [Glycine max]

 Score =  330 bits (845), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 160/245 (65%), Positives = 193/245 (78%), Gaps = 2/245 (0%)

Query: 1   MAELFIKQANLYAVARPNYPKELFKLIASKTPKRNLAWDVGTRSGQAAASLAQIYQHVIA 60
           MA+LF+KQA  YA ARP+YP +LF+ IASKTP  NLAWDVGT SGQAA SLA IY++VIA
Sbjct: 1   MAKLFLKQAKQYADARPSYPPQLFQFIASKTPSHNLAWDVGTGSGQAAKSLAAIYKNVIA 60

Query: 61  TDTSPKQLKFAIKLPNIRYQLTP-TMSITELEQNVATQSSVDLVTIASALHWFDLPQFYK 119
           TD S KQL+FA KLPN+RYQ TP TMS  ELEQ VA++ ++DLVTIA ALHWFD P FY+
Sbjct: 61  TDASDKQLEFAAKLPNVRYQHTPSTMSTAELEQMVASKGTIDLVTIAQALHWFDRPTFYE 120

Query: 120 QVKWVLKKPSGVIAAWTYTMPEINESVGAVFKPFDTIDCNPFWAPQRKLVDKKYMSIDFP 179
           QVKWVLKKP G+IAAW Y +P ++++   VF  F + + +P+W P RK VD  Y SIDFP
Sbjct: 121 QVKWVLKKPHGIIAAWCYYLPRVSDAFDTVFDQFYSTNVSPYWDPARKWVDDNYRSIDFP 180

Query: 180 FEPVDGYENTGPFDQFVVEKMMDLDDYFKFIRSCSAYQKAKDKGVELLTENVMEKFKAAW 239
           FEPVDG ++TGPF +FV E MMDLDD+  +IRS SAYQ AK+KGVELL E+V+EKFK AW
Sbjct: 181 FEPVDGADHTGPF-EFVTETMMDLDDFLTYIRSWSAYQTAKEKGVELLAEDVVEKFKLAW 239

Query: 240 NEDGQ 244
            ED +
Sbjct: 240 GEDAK 244

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357509479|ref|XP_003625028.1| Methyltransferase, putative [Medicago truncatula] gi|124359974|gb|ABN07990.1| SAM (and some other nucleotide) binding motif [Medicago truncatula] gi|217073190|gb|ACJ84954.1| unknown [Medicago truncatula] gi|355500043|gb|AES81246.1| Methyltransferase, putative [Medicago truncatula] gi|388520715|gb|AFK48419.1| unknown [Medicago truncatula]

 Score =  328 bits (842), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 164/263 (62%), Positives = 194/263 (73%), Gaps = 4/263 (1%)

Query: 1   MAELFIKQANLYAVARPNYPKELFKLIASKTPKRNLAWDVGTRSGQAAASLAQIYQHVIA 60
           MAELF+ Q   YA ARP+YP +LF+ IASKTP  NL WDV T SGQAA SLA +Y++VIA
Sbjct: 1   MAELFVNQGKEYADARPSYPPQLFQFIASKTPSHNLVWDVATGSGQAAKSLAALYKNVIA 60

Query: 61  TDTSPKQLKFAIKLPNIRYQLTP-TMSITELEQNVATQSSVDLVTIASALHWFDLPQFYK 119
           TD S +QL+FA KLPN++Y+ TP TMSI ELEQ V  Q ++DLVTIA  LHWFDLP FY+
Sbjct: 61  TDVSEQQLEFATKLPNVQYKHTPSTMSIPELEQIVTPQGTIDLVTIAQGLHWFDLPNFYQ 120

Query: 120 QVKWVLKKPSGVIAAWTYTMPEINESVGAVFKPFDTIDCNPFWAPQRKLVDKKYMSIDFP 179
           QVKWVLKKP GVIAAW Y +P I++ V  VF  F   D  P+W   RKLV+K Y SIDFP
Sbjct: 121 QVKWVLKKPHGVIAAWCYFLPRISDEVDTVFDQFYYTDSQPYWDSARKLVEKNYRSIDFP 180

Query: 180 FEPVDGYENTGPFDQFVVEKMMDLDDYFKFIRSCSAYQKAKDKGVELLTENVMEKFKAAW 239
           F+ VDG ++TGPF +FV E  M  D    +I+S SAYQ AK KGVELL E+V+EKFK AW
Sbjct: 181 FQAVDGVDHTGPF-EFVTETFMSFDGLLTYIKSWSAYQTAKKKGVELLGEDVVEKFKLAW 239

Query: 240 NEDGQSQKIARFRVYLRIGKVGN 262
            EDG   K A+F VYLRIG+VGN
Sbjct: 240 GEDG--HKTAKFPVYLRIGRVGN 260

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255639335|gb|ACU19965.1| unknown [Glycine max]

 Score =  328 bits (841), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 159/245 (64%), Positives = 192/245 (78%), Gaps = 2/245 (0%)

Query: 1   MAELFIKQANLYAVARPNYPKELFKLIASKTPKRNLAWDVGTRSGQAAASLAQIYQHVIA 60
           MA+LF+KQA  YA ARP+YP +LF+ IASKTP  NLAWDVGT SGQAA SLA IY++VIA
Sbjct: 1   MAKLFLKQAKQYADARPSYPPQLFQFIASKTPSHNLAWDVGTGSGQAAKSLAAIYKNVIA 60

Query: 61  TDTSPKQLKFAIKLPNIRYQLTP-TMSITELEQNVATQSSVDLVTIASALHWFDLPQFYK 119
           TD S KQL+FA KLPN+RYQ TP TMS  ELEQ VA++ ++DLVTIA ALHWFD P FY+
Sbjct: 61  TDASDKQLEFAAKLPNVRYQHTPSTMSTAELEQMVASKGTIDLVTIAQALHWFDRPTFYE 120

Query: 120 QVKWVLKKPSGVIAAWTYTMPEINESVGAVFKPFDTIDCNPFWAPQRKLVDKKYMSIDFP 179
           QVKWVLKKP G+IAAW Y +P ++++   VF  F + + +P+W P RK VD  Y SIDFP
Sbjct: 121 QVKWVLKKPHGIIAAWCYYLPRVSDAFDTVFDQFYSTNVSPYWDPARKWVDDNYRSIDFP 180

Query: 180 FEPVDGYENTGPFDQFVVEKMMDLDDYFKFIRSCSAYQKAKDKGVELLTENVMEKFKAAW 239
           FEPVDG ++TGPF +FV E MMDLDD+  +IRS SAYQ AK+KGVELL E+V+EKFK  W
Sbjct: 181 FEPVDGADHTGPF-EFVTETMMDLDDFLTYIRSWSAYQTAKEKGVELLAEDVVEKFKLVW 239

Query: 240 NEDGQ 244
            ED +
Sbjct: 240 GEDAK 244

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297739908|emb|CBI30090.3| unnamed protein product [Vitis vinifera]

 Score =  322 bits (825), Expect = 9e-86,   Method: Compositional matrix adjust.
 Identities = 158/262 (60%), Positives = 195/262 (74%), Gaps = 3/262 (1%)

Query: 1   MAELFIKQANLYAVARPNYPKELFKLIASKTPKRNLAWDVGTRSGQAAASLAQIYQHVIA 60
           M + + K AN Y+  RPNYP ELF+ IASKTP R+LAWDVG  +GQAA SLA +Y++V+A
Sbjct: 1   MGDFYDKLANRYSEIRPNYPPELFQFIASKTPVRDLAWDVGAGNGQAARSLAGMYKNVVA 60

Query: 61  TDTSPKQLKFAIKLPNIRYQLT-PTMSITELEQNVATQSSVDLVTIASALHWFDLPQFYK 119
           TD S KQL  A KLPN+RYQ T P  +I ++E +VA QSSVDL+TIA A+HWFDLP+FY+
Sbjct: 61  TDISQKQLDLAPKLPNVRYQQTSPVSTIADIEHDVAPQSSVDLITIAQAVHWFDLPKFYQ 120

Query: 120 QVKWVLKKPSGVIAAWTYTMPEINESVGAVFKPFDTIDCNPFWAPQRKLVDKKYMSIDFP 179
           Q KWVLKKP GVIAAW YT  E N+SV +VF  F  ID  P+W P R  +D +Y SI+FP
Sbjct: 121 QAKWVLKKPHGVIAAWCYTPAEFNQSVDSVFARF-YIDAKPYWDPARYHLDDRYRSIEFP 179

Query: 180 FEPVDGYENTGPFDQFVVEKMMDLDDYFKFIRSCSAYQKAKDKGVELLTENVMEKFKAAW 239
           F PV+G ++TGPF +F  E+ MDLD YF ++R+ S YQ A+  GVELLT NV+E F+ AW
Sbjct: 180 FMPVEGEDHTGPF-KFKTERQMDLDSYFAYLRTWSGYQTAQKNGVELLTSNVIEDFERAW 238

Query: 240 NEDGQSQKIARFRVYLRIGKVG 261
           NEDG  QKI  F +YLRIGKVG
Sbjct: 239 NEDGGGQKIGVFPIYLRIGKVG 260

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	262
TAIR|locus:2040277	269	AT2G41380 [Arabidopsis thalian	0.992	0.966	0.575	2.1e-75
TAIR|locus:2183700	261	AT5G10830 "AT5G10830" [Arabido	0.980	0.984	0.385	3.5e-43
TAIR|locus:2080245	323	AT3G54150 [Arabidopsis thalian	0.973	0.789	0.384	2.2e-41
TAIR|locus:2098841	261	AT3G61210 "AT3G61210" [Arabido	0.977	0.980	0.362	1.2e-40
TAIR|locus:2127550	261	AT4G22530 [Arabidopsis thalian	0.900	0.904	0.366	3.3e-40
DICTYBASE|DDB_G0268948	263	DDB_G0268948 "putative SAM dep	0.877	0.874	0.337	1.9e-26
UNIPROTKB|Q749F1	250	GSU2792 "SAM-dependent methylt	0.923	0.968	0.312	2.5e-26
TIGR_CMR|GSU_2792	250	GSU_2792 "conserved hypothetic	0.923	0.968	0.312	2.5e-26
DICTYBASE|DDB_G0288011	259	DDB_G0288011 "methyltransferas	0.881	0.891	0.328	8.7e-24
ZFIN|ZDB-GENE-070410-92	274	zgc:162780 "zgc:162780" [Danio	0.740	0.708	0.309	1.4e-16

TAIR|locus:2040277 AT2G41380 [Arabidopsis thaliana (taxid:3702)]

 Score = 760 (272.6 bits), Expect = 2.1e-75, P = 2.1e-75
 Identities = 152/264 (57%), Positives = 194/264 (73%)

Query:     1 MAELFIKQANLYAVARPNYPKELFKLIASKTPKRNLAWDVGTRSGQAAASLAQIYQHVIA 60
             MA+LFIKQA  YA ARP+YP +LF+ IASKTP  +LAWDVG  SGQA+ SLA IY++VIA
Sbjct:     1 MAKLFIKQAEQYAAARPSYPTKLFEYIASKTPCHDLAWDVGAGSGQASRSLAGIYKNVIA 60

Query:    61 TDTSPKQLKFAIKLPNIRYQLTP-TMSITELEQNVATQSSVDLVTIASALHWFDLPQFYK 119
             TDTS KQL+FA KLPN+RY++TP TMS +E+E+ VA +SSVDLVT+A ALHWFDL  FY 
Sbjct:    61 TDTSSKQLEFAAKLPNVRYEITPPTMSSSEIEKLVAPESSVDLVTVAQALHWFDLTNFYS 120

Query:   120 QVKWVLKKPSGVIAAWTYTMPEINESVGAVFKPFDTIDCNPFWAPQRKLVDKKYMSIDFP 179
              VK VLKKP+GVIAAW YT PE+N++V  VF+ F      P W   R+LV+  Y  I+FP
Sbjct:   121 NVKHVLKKPNGVIAAWCYTNPEVNDAVDKVFQRFYDEKLGPHWDLARRLVEDGYRGIEFP 180

Query:   180 FEPVDGYENTGP--FD-QFVVEKMMDLDDYFKFIRSCSAYQKAKDKGVELLTENVMEKFK 236
             FE VD  E+T    F  +FV EK M  ++Y  ++RS SAYQ AK+KG+ELLT  +  +F 
Sbjct:   181 FEKVDNDESTESQSFPVRFVTEKEMVFEEYMTYLRSSSAYQTAKEKGLELLTAEMEGEFA 240

Query:   237 AAWNEDGQSQKIARFRVYLRIGKV 260
              +W EDG+ +K+ R+ +YL IG+V
Sbjct:   241 GSWKEDGKEKKVVRYPIYLLIGRV 264

GO:0008152 "metabolic process" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0005829 "cytosol" evidence=RCA

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0010583 "response to cyclopentenone" evidence=RCA

TAIR|locus:2183700 AT5G10830 "AT5G10830" [Arabidopsis thaliana (taxid:3702)]

 Score = 456 (165.6 bits), Expect = 3.5e-43, P = 3.5e-43
 Identities = 101/262 (38%), Positives = 147/262 (56%)

Query:     1 MAELFIKQANLYAVARPNYPKELFKLIASKTPKRNLAWDVGTRSGQAAASLAQIYQHVIA 60
             MA LF KQA+LY  ARPNYP E F  +A  T    LAWD  T +GQAA ++A+ Y+ V+A
Sbjct:     1 MAGLFDKQADLYLDARPNYPSEWFSKLADLTDHHGLAWDAATGNGQAALAVAEHYESVVA 60

Query:    61 TDTSPKQLKFAIKLPNIRYQLTPT-MSITELEQNVATQSSVDLVTIASALHWFDLPQFYK 119
             TD S  QLK A   P I Y+ TPT M+  EL + +  ++SVDL+T+A  +HWFDLP+FY 
Sbjct:    61 TDVSESQLKLATPHPKINYRHTPTSMTDDELVELIGGENSVDLITVAQGVHWFDLPRFYS 120

Query:   120 QVKWVLKKPSGVIAAWTYTMPEINESVGAVFKPFDTIDCNPFWA-PQRKLVDKKYMSIDF 178
                 +L+KP G+IA W Y    ++    AV          PFW  P  + +   Y ++ F
Sbjct:   121 VATRLLRKPGGIIAVWGYNDVIVSPEFDAVQYRLHATTL-PFWKYPYIQHIFDSYEALPF 179

Query:   179 PFEPVDGYENTGPFDQFVVEKMMDLDDYFKFIRSCSAYQKAKDKGVELLTENVMEKFKAA 238
             PFE V G  + G   +  + K    +   +  +S SA   A++KGVELL E+++ + + A
Sbjct:   180 PFENV-GMGSEGEPLKLEMPKTTSFEGIIRMFKSWSAIVTAREKGVELLPESLVRELETA 238

Query:   239 WNEDGQSQKIARFRVYLRIGKV 260
             W      + +  ++ ++  GKV
Sbjct:   239 WGGSDLVRSVV-YKAFMIAGKV 259

GO:0005575 "cellular_component" evidence=ND

GO:0008152 "metabolic process" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

TAIR|locus:2080245 AT3G54150 [Arabidopsis thaliana (taxid:3702)]

 Score = 439 (159.6 bits), Expect = 2.2e-41, P = 2.2e-41
 Identities = 101/263 (38%), Positives = 150/263 (57%)

Query:     1 MAELFIKQANLYAVARPNYPKELFKLIASKTPKRNLAWDVGTRSGQAAASLAQIYQHVIA 60
             MA L  K+A  Y  ARP YP + FK IA++T     AWDVGT +GQAA  L + Y++V+A
Sbjct:     1 MAALSEKEAEAYLDARPRYPIDWFKKIAARTQDHKFAWDVGTGNGQAAIGLVEHYENVVA 60

Query:    61 TDTSPKQLKFAIKLPNIRYQLTPT-MSITELEQNVATQSSVDLVTIASALHWFDLPQFYK 119
             TD +  QL+ AIK   I Y  TPT +S  E+   +  ++SVDL+  A A+H+FDL  FY 
Sbjct:    61 TDINEAQLQRAIKHSRISYHHTPTTISEDEMVDLLGGENSVDLIVAAQAVHFFDLNVFYN 120

Query:   120 QVKWVLKKPSGVIAAWTYTMPEINESVGAVFKPFDTIDCN-PFWAPQRKLVDKKYMSIDF 178
               K VL+K  G+IA W Y    I+  +  + K    +D   PF  P   L    Y ++ F
Sbjct:   121 VAKRVLRKEGGLIAVWVYNDIIISHEIDPIMKRL--VDSTLPFRTPIMNLAFDGYKTLTF 178

Query:   179 PFEPVDGYENTG-PFDQFVVEKMMDLDDYFKFIRSCSAYQKAKDKGVELLTENVMEKFKA 237
             PFE + G  + G P    +  K+  L  +  F+RS     KAK+KGVEL+ E+++ KF+ 
Sbjct:   179 PFETI-GMGSEGKPITLDIPHKL-SLKGFIGFLRSWQPAMKAKEKGVELINEDLITKFEE 236

Query:   238 AWNEDGQSQKIARFRVYLRIGKV 260
             AW ++ Q + +  ++ ++ +GK+
Sbjct:   237 AWGDETQVKDVF-YKAHMIVGKI 258

GO:0008152 "metabolic process" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

TAIR|locus:2098841 AT3G61210 "AT3G61210" [Arabidopsis thaliana (taxid:3702)]

 Score = 432 (157.1 bits), Expect = 1.2e-40, P = 1.2e-40
 Identities = 95/262 (36%), Positives = 150/262 (57%)

Query:     1 MAELFIKQANLYAVARPNYPKELFKLIASKTPKRNLAWDVGTRSGQAAASLAQIYQHVIA 60
             +A L  KQA+ Y  ARP YP   +K++A +T    +AWDVGT +GQAA  +A+ YQ V+A
Sbjct:     4 LAALSGKQADEYLNARPKYPTIWYKVLAGRTSNHKVAWDVGTGNGQAAIGVAEYYQKVVA 63

Query:    61 TDTSPKQLKFAIKLPNIRYQLTPT-MSITELEQNVATQSSVDLVTIASALHWFDLPQFYK 119
             TD +  QL+ A+K P + Y  TP+ MS  +L   +  ++S+D++  A ALH+FDL +FY 
Sbjct:    64 TDINESQLQRAMKHPKVTYYHTPSSMSDDDLVTLLGGENSIDIIIAAQALHYFDLKRFYP 123

Query:   120 QVKWVLKKPSGVIAAWTYTMPEINESVGAVFKPFDTIDCN-PFWAPQRKLVDKKYMSIDF 178
              VK VL+K  G+I  W Y    I   V ++ K    +D   P+  P   L    Y +I+F
Sbjct:   124 IVKRVLRKQGGIIVVWVYNDLIITPKVDSIMKRL--VDSTLPYRNPTMNLAFDGYKTIEF 181

Query:   179 PFEPVDGYENTGPFDQFVVEKMMDLDDYFKFIRSCSAYQKAKDKGVELLTENVMEKFKAA 238
             PF+ +       P     +  M+ LD +  F++S     KAK++G +LLT  ++++FK A
Sbjct:   182 PFKNIRMGTQGRP-KALDIPHMLSLDGFLGFLKSWQPLVKAKEQGEDLLTSYMIDEFKEA 240

Query:   239 WNEDGQSQKIARFRVYLRIGKV 260
             W +D Q + +  ++ ++  GK+
Sbjct:   241 WGDDEQVKDV-HYKAFMLAGKL 261

GO:0005575 "cellular_component" evidence=ND

GO:0008152 "metabolic process" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

TAIR|locus:2127550 AT4G22530 [Arabidopsis thaliana (taxid:3702)]

 Score = 428 (155.7 bits), Expect = 3.3e-40, P = 3.3e-40
 Identities = 89/243 (36%), Positives = 146/243 (60%)

Query:     1 MAELFIKQANLYAVARPNYPKELFKLIASKTPKRNLAWDVGTRSGQAAASLAQIYQHVIA 60
             M+ ++  QA++Y  ARP YP + +  +A+ + + NLAWD GT +GQAA  +A+ Y+ V+A
Sbjct:     1 MSGVYDSQADIYLDARPTYPADWYSKLAALSHRHNLAWDAGTGNGQAAIGIAEHYERVVA 60

Query:    61 TDTSPKQLKFAIKLPNIRYQLTPT-MSITELEQNVATQSSVDLVTIASALHWFDLPQFYK 119
             TD S   L      P + Y  TP+ M+  E+   +  ++SVDL+T+A+A+HWFDLP+FY 
Sbjct:    61 TDVSETMLNLGKPHPKVTYHHTPSSMTEDEMVDLIGGENSVDLITVATAVHWFDLPRFYA 120

Query:   120 QVKWVLKKPSGVIAAWTY-TMPEINESVGAVFKPF--DTIDCNPFWAPQRKLVDKKYMSI 176
                 +L+KP G+IA W+Y T   +N    +V   F  +T+    F  P+ +     Y ++
Sbjct:   121 IANRLLRKPGGIIAVWSYNTDMVVNPEFDSVMTRFIAETLPYCKF--PESQYFLDGYKTL 178

Query:   177 DFPFEPVDGYENTGPFDQFVVEKMMDLDDYFKFIRSCSAYQKAKDKGVELLTENVMEKFK 236
              FPFE V G  + G   +  ++K +  + + + +RS SA   AK+KGV+LL++NV+++ +
Sbjct:   179 PFPFESV-GLGSEGKPMELEMKKTVSFEGFLRMLRSWSAVGAAKEKGVDLLSDNVVKELE 237

Query:   237 AAW 239
              AW
Sbjct:   238 TAW 240

GO:0005737 "cytoplasm" evidence=ISM;IDA

GO:0008152 "metabolic process" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0046482 "para-aminobenzoic acid metabolic process" evidence=RCA

DICTYBASE|DDB_G0268948 DDB_G0268948 "putative SAM dependent methyltransferase" [Dictyostelium discoideum (taxid:44689)]

 Score = 298 (110.0 bits), Expect = 1.9e-26, P = 1.9e-26
 Identities = 87/258 (33%), Positives = 138/258 (53%)

Query:    12 YAVARPNYPKELFKLIASKTP-KRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKF 70
             Y   RP Y  EL+ +I S    KR+LA D+G  SGQA   LA+ ++ VI  + S  Q++ 
Sbjct:    22 YKNFRPTYNDELYSIIDSHCDEKRDLAIDIGAGSGQATVRLAKYFKKVIGFEPSQGQIEN 81

Query:    71 AIKLPNIRYQLTPTMSITELEQNVATQSSVDLVTIASALHWFDLPQFYKQVKWVLKKPSG 130
             A K  N+ Y+L+    I +L        SVDL+T+A A HWF+LP FY++ K +L++ +G
Sbjct:    82 AEKTDNVEYRLSAAEKI-DLPSG-----SVDLITVAQAAHWFNLPVFYEESKRLLRE-NG 134

Query:   131 VIAAWTYTMPEI--NESVGAVFKP--FDTIDCNPFWAPQRKLVDKKYMSIDFPFEPVDGY 186
              +  W+Y + +I  N     V +   ++TI  + +WAP+RK +D +Y+ I    +P   +
Sbjct:   135 SLIIWSYGLMKITNNNDAQVVHEKHYYETIG-DQYWAPERKYIDDEYVDI----KP--SF 187

Query:   187 ENTGPFDQFVVEKMMDLDDYFKFIRSCSAYQ---KAKDKGV-ELLTENVMEKFKAAWNED 242
             ENT       + K M ++D   +  S S Y    KA +K V   + E +++ +K     D
Sbjct:   188 ENTTR-KTISLPKSMSINDMIGYYSSWSGYAAFIKAGNKDVLPEIKETLLKAYKTT---D 243

Query:   243 GQSQKI-ARFRVYLRIGK 259
             G S+ I   F VY+ + K
Sbjct:   244 GDSKLIDVNFPVYMILSK 261

GO:0045335 "phagocytic vesicle" evidence=IDA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0032259 "methylation" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

UNIPROTKB|Q749F1 GSU2792 "SAM-dependent methyltransferase, putative" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 297 (109.6 bits), Expect = 2.5e-26, P = 2.5e-26
 Identities = 81/259 (31%), Positives = 127/259 (49%)

Query:     3 ELFIKQANLYAVARPNYPKELFKLIASKTPKRNLAWDVGTRSGQAAASLAQIYQHVIATD 62
             + F   ++ Y   RP YP  LF  +A   P+R+ A D G  +GQA+  LA  +  V A D
Sbjct:     7 DYFSDTSDAYRTYRPEYPDALFAWLAGLPPRRDAALDCGCGTGQASVVLASYFPRVYAVD 66

Query:    63 TSPKQLKFAIKLPNIRYQLTPTMSITELEQNVATQSSVDLVTIASALHWFDLPQFYKQVK 122
              S  Q+  A+    + Y++ P       EQ     +SVDLV  A ALHWFD  +FY +V+
Sbjct:    67 PSAGQIASAVPHEGVVYRVAPA------EQTGLPGASVDLVVAAQALHWFDFDRFYPEVR 120

Query:   123 WVLKKPSGVIAAWTYTMPEINESVGAVFKPFDTIDCNPFWAPQRKLVDKKYMSIDFPFEP 182
              V  +P  V AA++Y +  I+  +  +   F       +W P+R  VD  Y SI FPF P
Sbjct:   121 RV-GRPGSVFAAFSYGLLSIDADLDRIIGRFYREVIGRYWPPERAHVDDGYRSIPFPF-P 178

Query:   183 VDGYENTGPFDQFVVEKMMDLDDYFKFIRSCSAYQKAKDK-GVELLTENVMEKFKAAWNE 241
                 E   P   F +E   +L+    ++ + SA ++ + + G + L E   E  + AW  
Sbjct:   179 ----EIAAP--PFAMEARWELEHLLGYLATWSAVREYRQRLGTDPLPELARE-VRDAWGI 231

Query:   242 DGQSQKIARFRVYLRIGKV 260
               + + I  + + LR+G++
Sbjct:   232 PEEGRTIV-WPLALRVGRI 249

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|GSU_2792 GSU_2792 "conserved hypothetical protein" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 297 (109.6 bits), Expect = 2.5e-26, P = 2.5e-26
 Identities = 81/259 (31%), Positives = 127/259 (49%)

Query:     3 ELFIKQANLYAVARPNYPKELFKLIASKTPKRNLAWDVGTRSGQAAASLAQIYQHVIATD 62
             + F   ++ Y   RP YP  LF  +A   P+R+ A D G  +GQA+  LA  +  V A D
Sbjct:     7 DYFSDTSDAYRTYRPEYPDALFAWLAGLPPRRDAALDCGCGTGQASVVLASYFPRVYAVD 66

Query:    63 TSPKQLKFAIKLPNIRYQLTPTMSITELEQNVATQSSVDLVTIASALHWFDLPQFYKQVK 122
              S  Q+  A+    + Y++ P       EQ     +SVDLV  A ALHWFD  +FY +V+
Sbjct:    67 PSAGQIASAVPHEGVVYRVAPA------EQTGLPGASVDLVVAAQALHWFDFDRFYPEVR 120

Query:   123 WVLKKPSGVIAAWTYTMPEINESVGAVFKPFDTIDCNPFWAPQRKLVDKKYMSIDFPFEP 182
              V  +P  V AA++Y +  I+  +  +   F       +W P+R  VD  Y SI FPF P
Sbjct:   121 RV-GRPGSVFAAFSYGLLSIDADLDRIIGRFYREVIGRYWPPERAHVDDGYRSIPFPF-P 178

Query:   183 VDGYENTGPFDQFVVEKMMDLDDYFKFIRSCSAYQKAKDK-GVELLTENVMEKFKAAWNE 241
                 E   P   F +E   +L+    ++ + SA ++ + + G + L E   E  + AW  
Sbjct:   179 ----EIAAP--PFAMEARWELEHLLGYLATWSAVREYRQRLGTDPLPELARE-VRDAWGI 231

Query:   242 DGQSQKIARFRVYLRIGKV 260
               + + I  + + LR+G++
Sbjct:   232 PEEGRTIV-WPLALRVGRI 249

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

DICTYBASE|DDB_G0288011 DDB_G0288011 "methyltransferase type 11 domain-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 273 (101.2 bits), Expect = 8.7e-24, P = 8.7e-24
 Identities = 84/256 (32%), Positives = 130/256 (50%)

Query:    12 YAVARPNYPKELFKLIASKTP-KRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKF 70
             Y   RP Y +EL+ +I S    KR+LA D G  SGQA   LA+ ++ VI  + S  Q++ 
Sbjct:    20 YKTFRPTYTEELYSIIDSYCDSKRDLAIDCGCGSGQATVKLAKYFKKVIGFEPSQGQIEN 79

Query:    71 AIKLPNIRYQLTPTMSITELEQNVATQSSVDLVTIASALHWFDLPQFYKQVKWVLKKPSG 130
             A+K  N+ ++L+P   I +L        SVDL+T+A+A+HWFDLP FY++ K +L+  +G
Sbjct:    80 AVKTENVDFRLSPAEKI-DLPSG-----SVDLITVATAVHWFDLPVFYQEAKRLLRD-NG 132

Query:   131 VIAAWTYTMPEI--NESVGAVFKPFDTIDCNPFWAPQRKLVDKKYMSIDFPFEPVDGYEN 188
              +  +T    +I  N+    +   F +     +WAP  K V   Y+ I  PFE V+    
Sbjct:   133 SLILFTTGFIQILNNDEAQKINDNFRSGTLGDYWAPIVKYVIDGYVDIKPPFENVERKTI 192

Query:   189 TGPFDQFVVEKMMDLDDYFKFIRSCSAYQ---KAKDKGV-ELLTENVMEKFKAAWNEDGQ 244
             + P       K+M ++D      S S Y    KA +  V   + EN+M  FK     D  
Sbjct:   193 SLP-------KLMSVNDVIGIYSSWSGYASFIKAGNNDVLPGVKENLMSAFKTT---DPN 242

Query:   245 SQKI-ARFRVYLRIGK 259
             ++ +   F VY+ + K
Sbjct:   243 AEIVETNFPVYMVLSK 258

GO:0045335 "phagocytic vesicle" evidence=IDA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0032259 "methylation" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

ZFIN|ZDB-GENE-070410-92 zgc:162780 "zgc:162780" [Danio rerio (taxid:7955)]

 Score = 205 (77.2 bits), Expect = 1.4e-16, P = 1.4e-16
 Identities = 66/213 (30%), Positives = 98/213 (46%)

Query:    36 LAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFA---IKLPNIRYQLTPTMSITELEQ 92
             LA DVG  SGQ    LA  +  V+ TD SP QL+     + +PN+ ++ +P       E+
Sbjct:    44 LAVDVGCGSGQGTLLLAPHFTRVVGTDISPAQLEMGRKHVNIPNVSFRESPA------EE 97

Query:    93 NVATQSSVDLVTIASALHWFDLPQFYKQVKWVLKKPSGVIAAWTYTMPEINESVGAVFKP 152
                   SVDLVT  SA HWFD  +F ++   VLK P G +A   YT+ ++  + G   + 
Sbjct:    98 LPFEDGSVDLVTAMSAFHWFDHSRFLQEADRVLK-PHGCLALLNYTL-DMELTYGNCSEA 155

Query:   153 FDTIDCNPFWAPQRKLVDKKYMSIDFPF--EPVDG--YENTGPFDQFVVEKMMDLDDYFK 208
              + I CN F+A    L D       F       D   Y      D F V+K + L  Y  
Sbjct:   156 LNLI-CNEFYAALHPLRDPHLGPSSFELYKRTYDSLQYPVKEWHDLFWVKKAVPLSGYIG 214

Query:   209 FIRSCSAYQ---KAKDKGVELLTENVMEKFKAA 238
              ++S S +Q   K   +    L++ + ++ K A
Sbjct:   215 MVKSFSTFQTLLKTDPEEARRLSQGIEDRLKRA 247

GO:0008152 "metabolic process" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.1.1	0.691

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: grail3.0024027701 hypothetical protein (263 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	262
pfam08241	92	pfam08241, Methyltransf_11, Methyltransferase doma	1e-10
TIGR02072	240	TIGR02072, BioC, biotin biosynthesis protein BioC	3e-07
pfam08242	98	pfam08242, Methyltransf_12, Methyltransferase doma	5e-06
pfam13847	151	pfam13847, Methyltransf_31, Methyltransferase doma	8e-06
COG0500	257	COG0500, SmtA, SAM-dependent methyltransferases [S	4e-04
COG2226	238	COG2226, UbiE, Methylase involved in ubiquinone/me	7e-04

>gnl|CDD|219759 pfam08241, Methyltransf_11, Methyltransferase domain

 Score = 56.5 bits (137), Expect = 1e-10
 Identities = 26/99 (26%), Positives = 41/99 (41%), Gaps = 13/99 (13%)

Query: 39  DVGTRSGQAAASLAQIYQ-HVIATDTSPKQLKFAIKLPNIRYQLTPTMSITEL--EQNVA 95
           DVG  +G  A +LA+     V   D SP+ L  A K    ++ +       +L       
Sbjct: 2   DVGCGTGLLAEALARRGGARVTGVDLSPEMLALARKRAPRKFVV---GDAEDLPFPDE-- 56

Query: 96  TQSSVDLVTIASALHWF-DLPQFYKQVKWVLKKPSGVIA 133
              S D+V  +  LH   D  +  +++  VL KP G + 
Sbjct: 57  ---SFDVVVSSLVLHHLPDPERALREIARVL-KPGGKLV 91

Members of this family are SAM dependent methyltransferases. Length = 92

>gnl|CDD|233708 TIGR02072, BioC, biotin biosynthesis protein BioC

 Score = 49.6 bits (119), Expect = 3e-07
 Identities = 34/127 (26%), Positives = 55/127 (43%), Gaps = 15/127 (11%)

Query: 39  DVGTRSGQAAASLAQ--IYQHVIATDTSPKQLKFAIKL--PNIRYQLTPTMSITELEQNV 94
           D+G  +G    +L +       IA D S   L  A      N+++         + E+  
Sbjct: 40  DIGCGTGYLTRALLKRFPQAEFIANDISAGMLAQAKTKLSENVQFICG------DAEKLP 93

Query: 95  ATQSSVDLVTIASALHWF-DLPQFYKQVKWVLKKPSGVIAAWTY---TMPEINESVGAVF 150
              SS DL+    AL W  DL Q   ++  VL KP G++A  T+   T+ E+ +S G   
Sbjct: 94  LEDSSFDLIVSNLALQWCDDLSQALSELARVL-KPGGLLAFSTFGPGTLHELRQSFGQHG 152

Query: 151 KPFDTID 157
             + ++D
Sbjct: 153 LRYLSLD 159

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology [Biosynthesis of cofactors, prosthetic groups, and carriers, Biotin]. Length = 240

>gnl|CDD|219760 pfam08242, Methyltransf_12, Methyltransferase domain

 Score = 43.9 bits (104), Expect = 5e-06
 Identities = 22/98 (22%), Positives = 40/98 (40%), Gaps = 5/98 (5%)

Query: 39  DVGTRSGQAAASLAQIYQ--HVIATDTSPKQLKFAI-KLPNIRYQLTPTMSITELEQNVA 95
           D+G  +G    +L +          D SP  L+ A  +L  +       + +  L+    
Sbjct: 2   DIGCGTGTLLRALLEALPGLEYTGVDISPAALEAAAERLAALGLLDAVRVRLDVLDAIDL 61

Query: 96  TQSSVDLVTIASALHWF-DLPQFYKQVKWVLKKPSGVI 132
              S D+V  ++ LH   D     + ++ +L KP GV+
Sbjct: 62  DPGSFDVVVASNVLHHLADPRAVLRNLRRLL-KPGGVL 98

Members of this family are SAM dependent methyltransferases. Length = 98

>gnl|CDD|222415 pfam13847, Methyltransf_31, Methyltransferase domain

 Score = 44.4 bits (105), Expect = 8e-06
 Identities = 24/118 (20%), Positives = 44/118 (37%), Gaps = 16/118 (13%)

Query: 38  WDVGTRSGQAAASLAQIYQ---HVIATDTSPKQLKFAIK------LPNIRYQLTPTMSIT 88
            D+G  +G     LA+       V+  D S + ++ A +        N+ +       I 
Sbjct: 8   LDLGCGTGYLTFILAEKLGPGAEVVGIDISEEAIEKAKENAKKLGYENVEFIQ---GDIE 64

Query: 89  ELEQNVATQSSVDLVTIASALHWF-DLPQFYKQVKWVLKKPSGVI---AAWTYTMPEI 142
           EL Q     +S D+V     L+   D  +  +++  VLK    +I         +P +
Sbjct: 65  ELPQLQLEDNSFDVVISNEVLNHLPDPDKVLEEIIRVLKPGGVLIVSDPVLLSELPAL 122

This family appears to be have methyltransferase activity. Length = 151

>gnl|CDD|223574 COG0500, SmtA, SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

 Score = 40.3 bits (91), Expect = 4e-04
 Identities = 35/219 (15%), Positives = 64/219 (29%), Gaps = 16/219 (7%)

Query: 1   MAELFIKQANLYAVARPNYPKELFKLIASKTPKRNLAWDVGTRSGQAA--ASLAQIYQHV 58
              L         +A       L   +    P      D+G  +G+ A  A L     +V
Sbjct: 16  YDRLAELLDAFLLLAEELLDLLLVLRLLRLLPGGLGVLDIGCGTGRLALLARLGGRGAYV 75

Query: 59  IATDTSPKQLKFAIK------LPNIRYQLTPTMSITELEQNVATQSSVDLVTIASALHWF 112
           +  D SP+ L  A        L  + + +                +S DLV     LH  
Sbjct: 76  VGVDLSPEMLALARARAEGAGLGLVDFVV---ADALGGVLPFEDSASFDLVISLLVLHLL 132

Query: 113 DLPQFYKQVKWVLKKPSGVIAAWTYTMPEINESVGAVFKPFDTIDCNPFWAPQRKLVDKK 172
              +  +++  VL KP G +         + E   A    F     +P       L++ +
Sbjct: 133 PPAKALRELLRVL-KPGGRLVLSDLLRDGLLEGRLAALLGF----GDPVLERGDILLELE 187

Query: 173 YMSIDFPFEPVDGYENTGPFDQFVVEKMMDLDDYFKFIR 211
            +      +  +     G  +         L++    + 
Sbjct: 188 ALLRLELLDLEELLGLLGELELERGGLARLLEELRLLLE 226

Length = 257

>gnl|CDD|225136 COG2226, UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

 Score = 39.6 bits (93), Expect = 7e-04
 Identities = 30/118 (25%), Positives = 45/118 (38%), Gaps = 17/118 (14%)

Query: 19  YPKELFKLIASKTPKRNLAWDVGTRSGQAAASLAQIYQ--HVIATDTSPKQLKFAI-KLP 75
           + + L  L+  K   + L  DV   +G  A  LA+      V+  D S   L+ A  KL 
Sbjct: 39  WRRALISLLGIKPGDKVL--DVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLK 96

Query: 76  NIRYQLTPTMSITELEQNVATQ-----SSVDLVTIASALHWF-DLPQFYKQVKWVLKK 127
                    +   E     A       +S D VTI+  L    D+ +  K++  VLK 
Sbjct: 97  K------KGVQNVEFVVGDAENLPFPDNSFDAVTISFGLRNVTDIDKALKEMYRVLKP 148

Length = 238

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	262
KOG3010	261	consensus Methyltransferase [General function pred	100.0
PRK10258	251	biotin biosynthesis protein BioC; Provisional	99.93
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	99.89
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	99.88
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	99.87
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	99.86
PLN02233	261	ubiquinone biosynthesis methyltransferase	99.84
PRK05785	226	hypothetical protein; Provisional	99.83
TIGR02072	240	BioC biotin biosynthesis protein BioC. This enzyme	99.83
PLN02244	340	tocopherol O-methyltransferase	99.82
PF08241	95	Methyltransf_11: Methyltransferase domain; InterPr	99.82
COG4106	257	Tam Trans-aconitate methyltransferase [General fun	99.81
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	99.79
PF13489	161	Methyltransf_23: Methyltransferase domain; PDB: 3J	99.76
PRK08317	241	hypothetical protein; Provisional	99.76
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	99.76
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	99.76
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	99.75
KOG1540	296	consensus Ubiquinone biosynthesis methyltransferas	99.74
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	99.73
PRK15451	247	tRNA cmo(5)U34 methyltransferase; Provisional	99.71
PRK11207	197	tellurite resistance protein TehB; Provisional	99.7
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	99.69
PRK11088	272	rrmA 23S rRNA methyltransferase A; Provisional	99.69
PF13847	152	Methyltransf_31: Methyltransferase domain; PDB: 3T	99.69
PLN02336	475	phosphoethanolamine N-methyltransferase	99.68
KOG4300	252	consensus Predicted methyltransferase [General fun	99.68
PF08242	99	Methyltransf_12: Methyltransferase domain; InterPr	99.66
KOG1270	282	consensus Methyltransferases [Coenzyme transport a	99.66
PLN02490	340	MPBQ/MSBQ methyltransferase	99.66
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	99.66
TIGR00740	239	methyltransferase, putative. A simple BLAST search	99.65
PRK15068	322	tRNA mo(5)U34 methyltransferase; Provisional	99.65
PF13649	101	Methyltransf_25: Methyltransferase domain; PDB: 3B	99.64
TIGR00452	314	methyltransferase, putative. Known examples to dat	99.62
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	99.62
TIGR03587	204	Pse_Me-ase pseudaminic acid biosynthesis-associate	99.62
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	99.61
PRK06922	677	hypothetical protein; Provisional	99.6
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	99.6
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	99.59
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	99.58
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	99.57
smart00138	264	MeTrc Methyltransferase, chemotaxis proteins. Meth	99.57
PRK06202	232	hypothetical protein; Provisional	99.57
PRK12335	287	tellurite resistance protein TehB; Provisional	99.57
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	99.56
PF05401	201	NodS: Nodulation protein S (NodS); InterPro: IPR00	99.54
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	99.54
PLN02336	475	phosphoethanolamine N-methyltransferase	99.54
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	99.54
PF05175	170	MTS: Methyltransferase small domain; InterPro: IPR	99.53
KOG2940	325	consensus Predicted methyltransferase [General fun	99.53
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	99.53
smart00828	224	PKS_MT Methyltransferase in polyketide synthase (P	99.52
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	99.5
TIGR02081	194	metW methionine biosynthesis protein MetW. This pr	99.5
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	99.5
PF03848	192	TehB: Tellurite resistance protein TehB; InterPro:	99.49
TIGR00091	194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	99.48
PF07021	193	MetW: Methionine biosynthesis protein MetW; InterP	99.48
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	99.47
PRK09489	342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	99.46
TIGR01983	224	UbiG ubiquinone biosynthesis O-methyltransferase.	99.46
TIGR00537	179	hemK_rel_arch HemK-related putative methylase. The	99.46
TIGR02021	219	BchM-ChlM magnesium protoporphyrin O-methyltransfe	99.45
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	99.45
COG4976	287	Predicted methyltransferase (contains TPR repeat)	99.45
PF08003	315	Methyltransf_9: Protein of unknown function (DUF16	99.44
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	99.42
PRK13255	218	thiopurine S-methyltransferase; Reviewed	99.42
KOG1541	270	consensus Predicted protein carboxyl methylase [Ge	99.42
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	99.41
PRK14967	223	putative methyltransferase; Provisional	99.41
PRK04266	226	fibrillarin; Provisional	99.41
PF13659	117	Methyltransf_26: Methyltransferase domain; PDB: 3G	99.4
TIGR03438	301	probable methyltransferase. This model represents	99.4
TIGR00438	188	rrmJ cell division protein FtsJ.	99.39
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	99.39
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	99.39
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	99.37
PRK14121	390	tRNA (guanine-N(7)-)-methyltransferase; Provisiona	99.36
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	99.36
TIGR01177	329	conserved hypothetical protein TIGR01177. This fam	99.36
PLN03075	296	nicotianamine synthase; Provisional	99.35
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	99.34
PLN02232	160	ubiquinone biosynthesis methyltransferase	99.34
PRK07580	230	Mg-protoporphyrin IX methyl transferase; Validated	99.34
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	99.33
PHA03411	279	putative methyltransferase; Provisional	99.33
PLN02585	315	magnesium protoporphyrin IX methyltransferase	99.32
PTZ00146	293	fibrillarin; Provisional	99.32
PRK00811	283	spermidine synthase; Provisional	99.31
TIGR03534	251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	99.3
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	99.29
PRK07402	196	precorrin-6B methylase; Provisional	99.28
TIGR02716	306	C20_methyl_CrtF C-20 methyltransferase BchU. Membe	99.28
PRK14968	188	putative methyltransferase; Provisional	99.28
PRK01581	374	speE spermidine synthase; Validated	99.27
cd02440	107	AdoMet_MTases S-adenosylmethionine-dependent methy	99.26
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	99.23
TIGR03533	284	L3_gln_methyl protein-(glutamine-N5) methyltransfe	99.23
PF05219	265	DREV: DREV methyltransferase; InterPro: IPR007884	99.22
PRK14966	423	unknown domain/N5-glutamine S-adenosyl-L-methionin	99.22
PRK13256	226	thiopurine S-methyltransferase; Reviewed	99.22
PRK04457	262	spermidine synthase; Provisional	99.22
COG4123	248	Predicted O-methyltransferase [General function pr	99.21
PRK11805	307	N5-glutamine S-adenosyl-L-methionine-dependent met	99.21
smart00650	169	rADc Ribosomal RNA adenine dimethylases.	99.2
PHA03412	241	putative methyltransferase; Provisional	99.2
COG2813	300	RsmC 16S RNA G1207 methylase RsmC [Translation, ri	99.19
TIGR00536	284	hemK_fam HemK family putative methylases. The gene	99.16
PRK03612	521	spermidine synthase; Provisional	99.16
PF03291	331	Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971	99.15
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	99.15
PRK09328	275	N5-glutamine S-adenosyl-L-methionine-dependent met	99.15
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	99.14
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	99.14
PF06080	204	DUF938: Protein of unknown function (DUF938); Inte	99.12
PLN02366	308	spermidine synthase	99.12
TIGR03704	251	PrmC_rel_meth putative protein-(glutamine-N5) meth	99.1
KOG2361	264	consensus Predicted methyltransferase [General fun	99.09
KOG2899	288	consensus Predicted methyltransferase [General fun	99.09
KOG3045	325	consensus Predicted RNA methylase involved in rRNA	99.07
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	99.07
PRK10901	427	16S rRNA methyltransferase B; Provisional	99.06
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	99.06
KOG1271	227	consensus Methyltransferases [General function pre	99.06
PRK13168	443	rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe	99.05
PF05148	219	Methyltransf_8: Hypothetical methyltransferase; In	99.05
PRK15128	396	23S rRNA m(5)C1962 methyltransferase; Provisional	99.05
KOG1975	389	consensus mRNA cap methyltransferase [RNA processi	99.04
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	99.04
PRK14904	445	16S rRNA methyltransferase B; Provisional	99.03
PF05891	218	Methyltransf_PK: AdoMet dependent proline di-methy	99.03
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	99.02
PRK14903	431	16S rRNA methyltransferase B; Provisional	99.02
PRK14901	434	16S rRNA methyltransferase B; Provisional	99.02
PRK03522	315	rumB 23S rRNA methyluridine methyltransferase; Rev	99.01
PF05724	218	TPMT: Thiopurine S-methyltransferase (TPMT); Inter	99.0
PRK10909	199	rsmD 16S rRNA m(2)G966-methyltransferase; Provisio	98.98
PF00891	241	Methyltransf_2: O-methyltransferase; InterPro: IPR	98.97
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	98.96
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	98.95
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	98.94
PRK14902	444	16S rRNA methyltransferase B; Provisional	98.94
TIGR00478	228	tly hemolysin TlyA family protein. Hemolysins are	98.91
PF02390	195	Methyltransf_4: Putative methyltransferase ; Inter	98.9
PRK00274	272	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	98.9
COG2890	280	HemK Methylase of polypeptide chain release factor	98.87
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	98.86
TIGR00479	431	rumA 23S rRNA (uracil-5-)-methyltransferase RumA.	98.86
PRK14896	258	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	98.85
PF01739	196	CheR: CheR methyltransferase, SAM binding domain;	98.83
TIGR00755	253	ksgA dimethyladenosine transferase. Alternate name	98.83
PRK10611	287	chemotaxis methyltransferase CheR; Provisional	98.83
PF10294	173	Methyltransf_16: Putative methyltransferase; Inter	98.81
PF05185	448	PRMT5: PRMT5 arginine-N-methyltransferase; InterPr	98.81
COG3963	194	Phospholipid N-methyltransferase [Lipid metabolism	98.81
KOG1331	293	consensus Predicted methyltransferase [General fun	98.79
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	98.79
TIGR02085	374	meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer	98.79
KOG1499	346	consensus Protein arginine N-methyltransferase PRM	98.77
PLN02823	336	spermine synthase	98.77
PTZ00338	294	dimethyladenosine transferase-like protein; Provis	98.77
TIGR00095	189	RNA methyltransferase, RsmD family. This model rep	98.77
COG4122	219	Predicted O-methyltransferase [General function pr	98.75
COG0220	227	Predicted S-adenosylmethionine-dependent methyltra	98.75
COG1041	347	Predicted DNA modification methylase [DNA replicat	98.75
COG2263	198	Predicted RNA methylase [Translation, ribosomal st	98.74
PLN02476	278	O-methyltransferase	98.73
PRK04148	134	hypothetical protein; Provisional	98.72
PF08704	247	GCD14: tRNA methyltransferase complex GCD14 subuni	98.72
PF01596	205	Methyltransf_3: O-methyltransferase; InterPro: IPR	98.69
COG1092	393	Predicted SAM-dependent methyltransferases [Genera	98.68
KOG1500	517	consensus Protein arginine N-methyltransferase CAR	98.68
PF03602	183	Cons_hypoth95: Conserved hypothetical protein 95;	98.67
PRK00536	262	speE spermidine synthase; Provisional	98.65
COG1352	268	CheR Methylase of chemotaxis methyl-accepting prot	98.64
KOG1661	237	consensus Protein-L-isoaspartate(D-aspartate) O-me	98.62
PLN02672	1082	methionine S-methyltransferase	98.61
PF01564	246	Spermine_synth: Spermine/spermidine synthase; Inte	98.61
KOG2904	328	consensus Predicted methyltransferase [General fun	98.56
PLN02589	247	caffeoyl-CoA O-methyltransferase	98.56
TIGR02143	353	trmA_only tRNA (uracil-5-)-methyltransferase. This	98.55
KOG0820	315	consensus Ribosomal RNA adenine dimethylase [RNA p	98.54
KOG3987	288	consensus Uncharacterized conserved protein DREV/C	98.54
PF01728	181	FtsJ: FtsJ-like methyltransferase; InterPro: IPR00	98.54
COG2521	287	Predicted archaeal methyltransferase [General func	98.53
PRK05031	362	tRNA (uracil-5-)-methyltransferase; Validated	98.52
COG0421	282	SpeE Spermidine synthase [Amino acid transport and	98.52
COG0293	205	FtsJ 23S rRNA methylase [Translation, ribosomal st	98.49
KOG1269	364	consensus SAM-dependent methyltransferases [Lipid	98.45
PF02475	200	Met_10: Met-10+ like-protein; InterPro: IPR003402	98.45
COG0500	257	SmtA SAM-dependent methyltransferases [Secondary m	98.43
PRK11727	321	23S rRNA mA1618 methyltransferase; Provisional	98.42
COG0030	259	KsgA Dimethyladenosine transferase (rRNA methylati	98.39
PRK04338	382	N(2),N(2)-dimethylguanosine tRNA methyltransferase	98.38
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	98.34
KOG3178	342	consensus Hydroxyindole-O-methyltransferase and re	98.34
PF10672	286	Methyltrans_SAM: S-adenosylmethionine-dependent me	98.34
COG0742	187	N6-adenine-specific methylase [DNA replication, re	98.3
PF01170	179	UPF0020: Putative RNA methylase family UPF0020; In	98.29
COG2265	432	TrmA SAM-dependent methyltransferases related to t	98.28
TIGR03439	319	methyl_EasF probable methyltransferase domain, Eas	98.27
PRK00050	296	16S rRNA m(4)C1402 methyltranserfase; Provisional	98.26
PF05958	352	tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas	98.26
PF09243	274	Rsm22: Mitochondrial small ribosomal subunit Rsm22	98.26
PRK11760	357	putative 23S rRNA C2498 ribose 2'-O-ribose methylt	98.25
KOG3420	185	consensus Predicted RNA methylase [Translation, ri	98.25
KOG3191	209	consensus Predicted N6-DNA-methyltransferase [Tran	98.24
COG1189	245	Predicted rRNA methylase [Translation, ribosomal s	98.17
PF02527	184	GidB: rRNA small subunit methyltransferase G; Inte	98.16
PF12147	311	Methyltransf_20: Putative methyltransferase; Inter	98.12
COG2520	341	Predicted methyltransferase [General function pred	98.11
PF00398	262	RrnaAD: Ribosomal RNA adenine dimethylase; InterPr	98.06
PF09445	163	Methyltransf_15: RNA cap guanine-N2 methyltransfer	98.06
KOG1663	237	consensus O-methyltransferase [Secondary metabolit	98.02
PF02384	311	N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T	98.02
PRK11933	470	yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF;	98.02
KOG1709	271	consensus Guanidinoacetate methyltransferase and r	97.94
PF08123	205	DOT1: Histone methylation protein DOT1 ; InterPro:	97.91
PF07942	270	N2227: N2227-like protein; InterPro: IPR012901 Thi	97.87
TIGR02987	524	met_A_Alw26 type II restriction m6 adenine DNA met	97.86
KOG2352	482	consensus Predicted spermine/spermidine synthase [	97.86
PF01234	256	NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I	97.85
PF11968	219	DUF3321: Putative methyltransferase (DUF3321); Int	97.79
PF04672	267	Methyltransf_19: S-adenosyl methyltransferase; Int	97.79
COG0357	215	GidB Predicted S-adenosylmethionine-dependent meth	97.75
TIGR00308	374	TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi	97.74
PF01269	229	Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr	97.66
COG4076	252	Predicted RNA methylase [General function predicti	97.64
COG0144	355	Sun tRNA and rRNA cytosine-C5-methylases [Translat	97.59
KOG2187	534	consensus tRNA uracil-5-methyltransferase and rela	97.56
COG4262	508	Predicted spermidine synthase with an N-terminal m	97.52
COG3897	218	Predicted methyltransferase [General function pred	97.51
KOG2730	263	consensus Methylase [General function prediction o	97.5
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	97.47
KOG4589	232	consensus Cell division protein FtsJ [Cell cycle c	97.34
PF13578	106	Methyltransf_24: Methyltransferase domain; PDB: 3S	97.34
TIGR01444	143	fkbM_fam methyltransferase, FkbM family. Members o	97.32
PF13679	141	Methyltransf_32: Methyltransferase domain	97.32
PF03059	276	NAS: Nicotianamine synthase protein; InterPro: IPR	97.2
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	97.1
COG0116	381	Predicted N6-adenine-specific DNA methylase [DNA r	97.1
KOG2915	314	consensus tRNA(1-methyladenosine) methyltransferas	96.97
PF01555	231	N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th	96.96
PF05971	299	Methyltransf_10: Protein of unknown function (DUF8	96.9
cd08283	386	FDH_like_1 Glutathione-dependent formaldehyde dehy	96.83
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	96.8
TIGR00006	305	S-adenosyl-methyltransferase MraW. Genetics paper	96.76
KOG3201	201	consensus Uncharacterized conserved protein [Funct	96.76
PRK11524	284	putative methyltransferase; Provisional	96.75
KOG1099	294	consensus SAM-dependent methyltransferase/cell div	96.73
PRK10742	250	putative methyltransferase; Provisional	96.72
PF07091	251	FmrO: Ribosomal RNA methyltransferase (FmrO); PDB:	96.6
COG4798	238	Predicted methyltransferase [General function pred	96.58
PF04989	206	CmcI: Cephalosporin hydroxylase; InterPro: IPR0070	96.57
PF00107	130	ADH_zinc_N: Zinc-binding dehydrogenase; InterPro:	96.56
PF04816	205	DUF633: Family of unknown function (DUF633) ; Inte	96.56
COG5459	484	Predicted rRNA methylase [Translation, ribosomal s	96.54
PRK13699	227	putative methylase; Provisional	96.52
PF01189	283	Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR	96.5
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	96.5
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	96.46
KOG0024	354	consensus Sorbitol dehydrogenase [Secondary metabo	96.45
PLN02668	386	indole-3-acetate carboxyl methyltransferase	96.35
cd08254	338	hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo	96.31
KOG2798	369	consensus Putative trehalase [Carbohydrate transpo	96.18
COG0286	489	HsdM Type I restriction-modification system methyl	96.07
PF01795	310	Methyltransf_5: MraW methylase family; InterPro: I	96.06
KOG2793	248	consensus Putative N2,N2-dimethylguanosine tRNA me	96.01
PHA01634	156	hypothetical protein	95.97
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	95.93
COG4627	185	Uncharacterized protein conserved in bacteria [Fun	95.81
KOG3115	249	consensus Methyltransferase-like protein [General	95.75
cd05188	271	MDR Medium chain reductase/dehydrogenase (MDR)/zin	95.7
KOG1562	337	consensus Spermidine synthase [Amino acid transpor	95.69
TIGR03451	358	mycoS_dep_FDH mycothiol-dependent formaldehyde deh	95.6
PF06962	140	rRNA_methylase: Putative rRNA methylase; InterPro:	95.47
PF04445	234	SAM_MT: Putative SAM-dependent methyltransferase;	95.31
COG3129	292	Predicted SAM-dependent methyltransferase [General	95.19
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	95.06
KOG0822	649	consensus Protein kinase inhibitor [Cell cycle con	95.06
TIGR01202	308	bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl	94.99
TIGR02822	329	adh_fam_2 zinc-binding alcohol dehydrogenase famil	94.95
COG2384	226	Predicted SAM-dependent methyltransferase [General	94.93
cd08232	339	idonate-5-DH L-idonate 5-dehydrogenase. L-idonate	94.92
PF06859	110	Bin3: Bicoid-interacting protein 3 (Bin3); InterPr	94.85
cd08237	341	ribitol-5-phosphate_DH ribitol-5-phosphate dehydro	94.85
cd08239	339	THR_DH_like L-threonine dehydrogenase (TDH)-like.	94.74
cd08281	371	liver_ADH_like1 Zinc-dependent alcohol dehydrogena	94.7
TIGR03366	280	HpnZ_proposed putative phosphonate catabolism asso	94.68
COG3510	237	CmcI Cephalosporin hydroxylase [Defense mechanisms	94.64
KOG2198	375	consensus tRNA cytosine-5-methylases and related e	94.63
PF03492	334	Methyltransf_7: SAM dependent carboxyl methyltrans	94.62
PRK10309	347	galactitol-1-phosphate dehydrogenase; Provisional	94.61
cd00315	275	Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth	94.56
KOG2920	282	consensus Predicted methyltransferase [General fun	94.46
COG1889	231	NOP1 Fibrillarin-like rRNA methylase [Translation,	94.32
PF11599	246	AviRa: RRNA methyltransferase AviRa; InterPro: IPR	94.23
cd05278	347	FDH_like Formaldehyde dehydrogenases. Formaldehyde	94.17
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	94.17
COG4301	321	Uncharacterized conserved protein [Function unknow	94.16
cd08236	343	sugar_DH NAD(P)-dependent sugar dehydrogenases. Th	94.16
PF07757	112	AdoMet_MTase: Predicted AdoMet-dependent methyltra	94.1
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	94.1
cd08261	337	Zn_ADH7 Alcohol dehydrogenases of the MDR family.	93.98
PLN02586	360	probable cinnamyl alcohol dehydrogenase	93.93
PLN03154	348	putative allyl alcohol dehydrogenase; Provisional	93.74
PLN02740	381	Alcohol dehydrogenase-like	93.67
KOG1501	636	consensus Arginine N-methyltransferase [General fu	93.61
KOG1227	351	consensus Putative methyltransferase [General func	93.55
TIGR02825	325	B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15	93.52
PF03686	127	UPF0146: Uncharacterised protein family (UPF0146);	93.46
TIGR02819	393	fdhA_non_GSH formaldehyde dehydrogenase, glutathio	93.45
COG0275	314	Predicted S-adenosylmethionine-dependent methyltra	93.42
cd08234	334	threonine_DH_like L-threonine dehydrogenase. L-thr	93.36
cd08285	351	NADP_ADH NADP(H)-dependent alcohol dehydrogenases.	93.09
TIGR03201	349	dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co	93.01
KOG1098	780	consensus Putative SAM-dependent rRNA methyltransf	92.86
cd08293	345	PTGR2 Prostaglandin reductase. Prostaglandins and	92.82
PLN02827	378	Alcohol dehydrogenase-like	92.56
TIGR02818	368	adh_III_F_hyde S-(hydroxymethyl)glutathione dehydr	92.48
cd08294	329	leukotriene_B4_DH_like 13-PGR is a bifunctional en	92.31
COG0604	326	Qor NADPH:quinone reductase and related Zn-depende	92.3
KOG2651	476	consensus rRNA adenine N-6-methyltransferase [RNA	92.16
cd08295	338	double_bond_reductase_like Arabidopsis alkenal dou	92.09
cd05285	343	sorbitol_DH Sorbitol dehydrogenase. Sorbitol and a	92.07
cd08300	368	alcohol_DH_class_III class III alcohol dehydrogena	91.99
COG1255	129	Uncharacterized protein conserved in archaea [Func	91.76
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	91.74
cd08245	330	CAD Cinnamyl alcohol dehydrogenases (CAD) and rela	91.69
cd08291	324	ETR_like_1 2-enoyl thioester reductase (ETR) like	91.37
PLN02178	375	cinnamyl-alcohol dehydrogenase	91.21
cd08265	384	Zn_ADH3 Alcohol dehydrogenases of the MDR family.	91.11
cd08263	367	Zn_ADH10 Alcohol dehydrogenases of the MDR family.	90.98
cd08301	369	alcohol_DH_plants Plant alcohol dehydrogenase. NAD	90.92
cd08277	365	liver_alcohol_DH_like Liver alcohol dehydrogenase.	90.88
cd08278	365	benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Be	90.84
cd08233	351	butanediol_DH_like (2R,3R)-2,3-butanediol dehydrog	90.83
PRK13699	227	putative methylase; Provisional	90.78
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	90.69
PF01861	243	DUF43: Protein of unknown function DUF43; InterPro	90.67
cd08255	277	2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_	90.6
KOG1596	317	consensus Fibrillarin and related nucleolar RNA-bi	90.59
cd08286	345	FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-lik	90.44
cd08231	361	MDR_TM0436_like Hypothetical enzyme TM0436 resembl	90.41
PLN02514	357	cinnamyl-alcohol dehydrogenase	90.36
KOG2352	482	consensus Predicted spermine/spermidine synthase [	90.19
cd08296	333	CAD_like Cinnamyl alcohol dehydrogenases (CAD). Ci	90.05
PRK11524	284	putative methyltransferase; Provisional	90.04
PF00145	335	DNA_methylase: C-5 cytosine-specific DNA methylase	90.04
COG2933	358	Predicted SAM-dependent methyltransferase [General	89.92
PF03269	177	DUF268: Caenorhabditis protein of unknown function	89.72
cd08289	326	MDR_yhfp_like Yhfp putative quinone oxidoreductase	89.69
cd08279	363	Zn_ADH_class_III Class III alcohol dehydrogenase.	89.67
cd08240	350	6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehy	89.63
PRK05396	341	tdh L-threonine 3-dehydrogenase; Validated	89.62
TIGR00692	340	tdh L-threonine 3-dehydrogenase. E. coli His-90 mo	89.58
cd05284	340	arabinose_DH_like D-arabinose dehydrogenase. This	89.39
cd08241	323	QOR1 Quinone oxidoreductase (QOR). QOR catalyzes t	89.38
COG0270	328	Dcm Site-specific DNA methylase [DNA replication,	89.23
PTZ00357	1072	methyltransferase; Provisional	89.2
cd05281	341	TDH Threonine dehydrogenase. L-threonine dehydroge	89.15
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	89.14
KOG4058	199	consensus Uncharacterized conserved protein [Funct	89.14
KOG1122	460	consensus tRNA and rRNA cytosine-C5-methylase (nuc	88.88
cd08238	410	sorbose_phosphate_red L-sorbose-1-phosphate reduct	88.83
cd08243	320	quinone_oxidoreductase_like_1 Quinone oxidoreducta	88.42
PF02636	252	Methyltransf_28: Putative S-adenosyl-L-methionine-	88.32
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	88.28
cd08242	319	MDR_like Medium chain dehydrogenases/reductase (MD	88.24
cd05286	320	QOR2 Quinone oxidoreductase (QOR). Quinone oxidore	88.12
cd08298	329	CAD2 Cinnamyl alcohol dehydrogenases (CAD). These	88.03
PRK07417	279	arogenate dehydrogenase; Reviewed	87.82
COG0569	225	TrkA K+ transport systems, NAD-binding component [	87.5
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	87.36
KOG2078	495	consensus tRNA modification enzyme [RNA processing	87.06
cd08235	343	iditol_2_DH_like L-iditol 2-dehydrogenase. Putativ	87.01
PF11899	380	DUF3419: Protein of unknown function (DUF3419); In	86.72
PF07652	148	Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR	86.59
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	86.57
PF03514	374	GRAS: GRAS domain family; InterPro: IPR005202 Sequ	86.45
cd08287	345	FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-lik	86.34
PRK10083	339	putative oxidoreductase; Provisional	85.81
cd08260	345	Zn_ADH6 Alcohol dehydrogenases of the MDR family.	85.67
cd08269	312	Zn_ADH9 Alcohol dehydrogenases of the MDR family.	85.63
TIGR00675	315	dcm DNA-methyltransferase (dcm). All proteins in t	85.32
PRK09422	338	ethanol-active dehydrogenase/acetaldehyde-active r	85.27
cd08282	375	PFDH_like Pseudomonas putida aldehyde-dismutating	85.25
KOG2539	491	consensus Mitochondrial/chloroplast ribosome small	85.12
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	85.1
PRK10458	467	DNA cytosine methylase; Provisional	84.99
cd08266	342	Zn_ADH_like1 Alcohol dehydrogenases of the MDR fam	84.43
cd05283	337	CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnam	83.99
PTZ00354	334	alcohol dehydrogenase; Provisional	83.88
cd05280	325	MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone	83.83
cd05279	365	Zn_ADH1 Liver alcohol dehydrogenase and related zi	83.78
PRK12742	237	oxidoreductase; Provisional	83.75
COG1062	366	AdhC Zn-dependent alcohol dehydrogenases, class II	83.72
cd08268	328	MDR2 Medium chain dehydrogenases/reductase (MDR)/z	83.71
PRK10754	327	quinone oxidoreductase, NADPH-dependent; Provision	83.58
PF02086	260	MethyltransfD12: D12 class N6 adenine-specific DNA	83.56
cd08276	336	MDR7 Medium chain dehydrogenases/reductase (MDR)/z	83.49
cd08297	341	CAD3 Cinnamyl alcohol dehydrogenases (CAD). These	83.42
COG0863	302	DNA modification methylase [DNA replication, recom	83.38
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	83.29
KOG2671	421	consensus Putative RNA methylase [Replication, rec	83.21
cd08292	324	ETR_like_2 2-enoyl thioester reductase (ETR) like	83.11
PF08484	160	Methyltransf_14: C-methyltransferase C-terminal do	82.83
cd08274	350	MDR9 Medium chain dehydrogenases/reductase (MDR)/z	82.5
PF02005	377	TRM: N2,N2-dimethylguanosine tRNA methyltransferas	82.07
PRK08177	225	short chain dehydrogenase; Provisional	82.01
cd05288	329	PGDH Prostaglandin dehydrogenases. Prostaglandins	81.6
cd08244	324	MDR_enoyl_red Possible enoyl reductase. Member ide	81.52
TIGR00497	501	hsdM type I restriction system adenine methylase (	81.5
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	81.28
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	81.25
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	81.16
PF11899	380	DUF3419: Protein of unknown function (DUF3419); In	81.02
cd08246	393	crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-	80.96
PRK03659	601	glutathione-regulated potassium-efflux system prot	80.47
COG1565	370	Uncharacterized conserved protein [Function unknow	80.24
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	80.13
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	80.06

>KOG3010 consensus Methyltransferase [General function prediction only]

Probab=100.00  E-value=3e-45  Score=293.64  Aligned_cols=258  Identities=42%  Similarity=0.688  Sum_probs=223.6

Q ss_pred             ChhhhHHHHHHHHhhCCCChHHHHHHHHhhCCCCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhcCCCceEE
Q 037961            1 MAELFIKQANLYAVARPNYPKELFKLIASKTPKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKLPNIRYQ   80 (262)
Q Consensus         1 ~~~~F~~~a~~Y~~~rp~yp~~~~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~   80 (262)
                      |+.+|+.+|+.|...||+||..++..+.......+.++|+|||+|+.++.++.++.+|+|+|+|+.||+.|++.+++++.
T Consensus         1 ~~~~~~~~a~~Y~~ARP~YPtdw~~~ia~~~~~h~~a~DvG~G~Gqa~~~iae~~k~VIatD~s~~mL~~a~k~~~~~y~   80 (261)
T KOG3010|consen    1 MAKLFDKQAADYLNARPSYPTDWFKKIASRTEGHRLAWDVGTGNGQAARGIAEHYKEVIATDVSEAMLKVAKKHPPVTYC   80 (261)
T ss_pred             CcccccccHHHHhhcCCCCcHHHHHHHHhhCCCcceEEEeccCCCcchHHHHHhhhhheeecCCHHHHHHhhcCCCcccc
Confidence            78899999999999999999999999998887666999999999999999999999999999999999999998888887


Q ss_pred             eCC-CCchhhhhhccCCCCceeeEEEccccccCChhHHHHHHHHhhcCCCeEEEEEecCC-CcccHHHHHhhcccccCCC
Q 037961           81 LTP-TMSITELEQNVATQSSVDLVTIASALHWFDLPQFYKQVKWVLKKPSGVIAAWTYTM-PEINESVGAVFKPFDTIDC  158 (262)
Q Consensus        81 ~~~-~~~~~~~~~~~~~~~~~D~V~~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~~~-~~~~~~~~~~~~~~~~~~~  158 (262)
                      ... ..+-++...+.-.++|+|+|+|++|+||||.+.+++++.|+||++||++++|+|++ ....+++..++.+++. ..
T Consensus        81 ~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~HWFdle~fy~~~~rvLRk~Gg~iavW~Y~dd~v~~pE~dsv~~r~~~-~~  159 (261)
T KOG3010|consen   81 HTPSTMSSDEMVDLLGGEESVDLITAAQAVHWFDLERFYKEAYRVLRKDGGLIAVWNYNDDFVDWPEFDSVMLRLYD-ST  159 (261)
T ss_pred             cCCccccccccccccCCCcceeeehhhhhHHhhchHHHHHHHHHHcCCCCCEEEEEEccCCCcCCHHHHHHHHHHhh-cc
Confidence            766 44333444443348999999999999999999999999999997888999999994 4447899999999887 57


Q ss_pred             CCCcc-ccchhHHhcCCCCCCCCCCCCCCCCCCCCcceeEeEeecHHHHHHHHhhhhHHHHHHHhCCccchHHHHHHHHH
Q 037961          159 NPFWA-PQRKLVDKKYMSIDFPFEPVDGYENTGPFDQFVVEKMMDLDDYFKFIRSCSAYQKAKDKGVELLTENVMEKFKA  237 (262)
Q Consensus       159 ~~~~~-~~~~~~~~~~~~~~~~f~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~~~~~~~~~~~~l~~~~~~~l~~  237 (262)
                      +|+|. +.+.++-.+|+.+.|||+.+.-.....+. .+.+..+++++++.+|++|||.|..+++++.+.+.+.+..++++
T Consensus       160 ~p~~r~~~~n~~fdgy~~~~F~~e~v~~~s~~~~~-~l~~~~~lsl~~F~~~~rsws~~~~akek~~e~i~~~~I~e~~~  238 (261)
T KOG3010|consen  160 LPYWRSPLRNLLFDGYKTIEFPFESVGMGSQGKPK-TLEIPHTLSLEGFSGFLRSWSAYKEAKEKGLELIADIFIPEFEE  238 (261)
T ss_pred             CchhhhHHHHhhccccccccccccccCCCCCCCce-eehhhHHHHHHHHHHHHhCcHHHHHHHhcChHHHHHHHHHHHHh
Confidence            78754 66777889999999999887533222233 78889999999999999999999999999999999989999999


Q ss_pred             HhccCCCCeEEEEEeEEEEEEEeC
Q 037961          238 AWNEDGQSQKIARFRVYLRIGKVG  261 (262)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~rk~  261 (262)
                      .|+... ....+.|.+++++||++
T Consensus       239 ~~~~~~-~~~~V~y~tf~~~gk~~  261 (261)
T KOG3010|consen  239 AWGEDN-LVKTVVYSTFMLLGKVR  261 (261)
T ss_pred             hccccc-ceeEEEeeeeeeecccC
Confidence            999874 47799999999999975

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=99.93  E-value=3.4e-24  Score=180.75  Aligned_cols=236  Identities=17%  Similarity=0.236  Sum_probs=155.0

Q ss_pred             hhhhHHHHHHHHhhCCCChHHHHHHHHhhCC--CCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhcC-CCce
Q 037961            2 AELFIKQANLYAVARPNYPKELFKLIASKTP--KRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKL-PNIR   78 (262)
Q Consensus         2 ~~~F~~~a~~Y~~~rp~yp~~~~~~l~~~~~--~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~-~~~~   78 (262)
                      ++.|+++|..|+++.. .-....+.+.+.++  +..+|||+|||+|.++..++..+.+|+++|+|+.|++.+++. ....
T Consensus        10 ~~~F~~aa~~Y~~~~~-~q~~~a~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~~D~s~~~l~~a~~~~~~~~   88 (251)
T PRK10258         10 AAAFGRAAAHYEQHAE-LQRQSADALLAMLPQRKFTHVLDAGCGPGWMSRYWRERGSQVTALDLSPPMLAQARQKDAADH   88 (251)
T ss_pred             HHHHHHHHHhHhHHHH-HHHHHHHHHHHhcCccCCCeEEEeeCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhCCCCC
Confidence            5789999999998643 22444555666554  457899999999999999998899999999999999999865 3455


Q ss_pred             EEeCCCCchhhhhhccCCCCceeeEEEccccccC-ChhHHHHHHHHhhcCCCeEEEEEecCCCcccHHHHHhhcccccCC
Q 037961           79 YQLTPTMSITELEQNVATQSSVDLVTIASALHWF-DLPQFYKQVKWVLKKPSGVIAAWTYTMPEINESVGAVFKPFDTID  157 (262)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~~~~-d~~~~l~~~~r~Lk~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~  157 (262)
                      ++.+      |++.+++++++||+|+++.++||+ |+..++.++.++|+ |||.+++.......+ .++...+.......
T Consensus        89 ~~~~------d~~~~~~~~~~fD~V~s~~~l~~~~d~~~~l~~~~~~Lk-~gG~l~~~~~~~~~~-~el~~~~~~~~~~~  160 (251)
T PRK10258         89 YLAG------DIESLPLATATFDLAWSNLAVQWCGNLSTALRELYRVVR-PGGVVAFTTLVQGSL-PELHQAWQAVDERP  160 (251)
T ss_pred             EEEc------CcccCcCCCCcEEEEEECchhhhcCCHHHHHHHHHHHcC-CCeEEEEEeCCCCch-HHHHHHHHHhccCC
Confidence            6654      467777888899999999999999 99999999999999 999999977665543 44555554432211


Q ss_pred             -CCCCccccchhHHhcCCCCCCCCCCCCCCCCCCCCcceeEeEeecHHHHHHHHhhhhHHHHHHHhCCccchHHHHHHHH
Q 037961          158 -CNPFWAPQRKLVDKKYMSIDFPFEPVDGYENTGPFDQFVVEKMMDLDDYFKFIRSCSAYQKAKDKGVELLTENVMEKFK  236 (262)
Q Consensus       158 -~~~~~~~~~~~~~~~~~~~~~~f~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~~~~~~~~~~~~l~~~~~~~l~  236 (262)
                       ..++.+  ...+...+...+  +. .+.        .......-+..+++..++............+..+....++++.
T Consensus       161 ~~~~~~~--~~~l~~~l~~~~--~~-~~~--------~~~~~~f~~~~~~l~~lk~~G~~~~~~~~~~~~~~~~~~~~~~  227 (251)
T PRK10258        161 HANRFLP--PDAIEQALNGWR--YQ-HHI--------QPITLWFDDALSAMRSLKGIGATHLHEGRDPRILTRSQLQRLQ  227 (251)
T ss_pred             ccccCCC--HHHHHHHHHhCC--ce-eee--------eEEEEECCCHHHHHHHHHHhCCCCCCCCCCCCCCcHHHHHHHH
Confidence             112222  112223322222  11 000        1111122244455555554433222111234455555566677


Q ss_pred             HHhccCCCCeEEEEEeEEEEEEEe
Q 037961          237 AAWNEDGQSQKIARFRVYLRIGKV  260 (262)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~rk  260 (262)
                      +.|...+ +.++++|.+++..++|
T Consensus       228 ~~~~~~~-g~~~lty~v~~~~~~~  250 (251)
T PRK10258        228 LAWPQQQ-GRYPLTYHLFLGVIER  250 (251)
T ss_pred             HhccccC-CCcceEEEEEEEEEEc
Confidence            7776533 3689999999988876

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=99.89  E-value=1.6e-22  Score=166.55  Aligned_cols=144  Identities=23%  Similarity=0.303  Sum_probs=111.9

Q ss_pred             hhhhHHHHHHHHhhCC----CChHHHHHHHHhhC--CCCCeEEEEcCcccHhHHHHHhhC--CeEEEEcCCHHHHHHHhc
Q 037961            2 AELFIKQANLYAVARP----NYPKELFKLIASKT--PKRNLAWDVGTRSGQAAASLAQIY--QHVIATDTSPKQLKFAIK   73 (262)
Q Consensus         2 ~~~F~~~a~~Y~~~rp----~yp~~~~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~   73 (262)
                      ..-|++.|..|+..-.    .--...-+.+....  +++..|||||||||..+..+++..  .+|+|+|+|+.||+.|++
T Consensus        14 ~~vF~~ia~~YD~~n~~~S~g~~~~Wr~~~i~~~~~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~   93 (238)
T COG2226          14 QKVFDKVAKKYDLMNDLMSFGLHRLWRRALISLLGIKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVARE   93 (238)
T ss_pred             HHHHHhhHHHHHhhcccccCcchHHHHHHHHHhhCCCCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHH
Confidence            4679999999988531    11122222333332  278999999999999999999975  799999999999999986


Q ss_pred             C------CCceEEeCCCCchhhhhhccCCCCceeeEEEccccccC-ChhHHHHHHHHhhcCCCeEEEEEecCCCcccHHH
Q 037961           74 L------PNIRYQLTPTMSITELEQNVATQSSVDLVTIASALHWF-DLPQFYKQVKWVLKKPSGVIAAWTYTMPEINESV  146 (262)
Q Consensus        74 ~------~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~~~~-d~~~~l~~~~r~Lk~pgG~l~i~~~~~~~~~~~~  146 (262)
                      .      .+++++++      |++++|+++++||+|+++++++++ |.+++|+|++|||| |||.+++.....+. ...+
T Consensus        94 k~~~~~~~~i~fv~~------dAe~LPf~D~sFD~vt~~fglrnv~d~~~aL~E~~RVlK-pgG~~~vle~~~p~-~~~~  165 (238)
T COG2226          94 KLKKKGVQNVEFVVG------DAENLPFPDNSFDAVTISFGLRNVTDIDKALKEMYRVLK-PGGRLLVLEFSKPD-NPVL  165 (238)
T ss_pred             HhhccCccceEEEEe------chhhCCCCCCccCEEEeeehhhcCCCHHHHHHHHHHhhc-CCeEEEEEEcCCCC-chhh
Confidence            3      23778875      599999999999999999999999 99999999999999 99999986666543 2333


Q ss_pred             HHhhccc
Q 037961          147 GAVFKPF  153 (262)
Q Consensus       147 ~~~~~~~  153 (262)
                      ...+..+
T Consensus       166 ~~~~~~~  172 (238)
T COG2226         166 RKAYILY  172 (238)
T ss_pred             HHHHHHH
Confidence            4444333

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=99.88  E-value=2.1e-21  Score=164.12  Aligned_cols=211  Identities=14%  Similarity=0.126  Sum_probs=135.9

Q ss_pred             CCCCeEEEEcCcccHhHHHHHhh--CCeEEEEcCCHHHHHHHhcCCCceEEeCCCCchhhhhhccCCCCceeeEEEcccc
Q 037961           32 PKRNLAWDVGTRSGQAAASLAQI--YQHVIATDTSPKQLKFAIKLPNIRYQLTPTMSITELEQNVATQSSVDLVTIASAL  109 (262)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~  109 (262)
                      .++.+|||+|||+|.++..+++.  +.+|+|+|+|+.|++.|++. ++++..++      +++++ ++++||+|+++.++
T Consensus        28 ~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~-~~~~~~~d------~~~~~-~~~~fD~v~~~~~l   99 (255)
T PRK14103         28 ERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER-GVDARTGD------VRDWK-PKPDTDVVVSNAAL   99 (255)
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc-CCcEEEcC------hhhCC-CCCCceEEEEehhh
Confidence            46688999999999999999987  67999999999999999864 67777764      55553 56789999999999


Q ss_pred             ccC-ChhHHHHHHHHhhcCCCeEEEEEecCCC--cccHHHHHhh-----cccccCC-CC-CCccccchhHHhcCCCCCCC
Q 037961          110 HWF-DLPQFYKQVKWVLKKPSGVIAAWTYTMP--EINESVGAVF-----KPFDTID-CN-PFWAPQRKLVDKKYMSIDFP  179 (262)
Q Consensus       110 ~~~-d~~~~l~~~~r~Lk~pgG~l~i~~~~~~--~~~~~~~~~~-----~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~  179 (262)
                      ||+ |+.+++++++++|| |||.+++......  ........+.     ....... .. +........+.+.+++.+| 
T Consensus       100 ~~~~d~~~~l~~~~~~Lk-pgG~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf-  177 (255)
T PRK14103        100 QWVPEHADLLVRWVDELA-PGSWIAVQVPGNFDAPSHAAVRALARREPWAKLLRDIPFRVGAVVQTPAGYAELLTDAGC-  177 (255)
T ss_pred             hhCCCHHHHHHHHHHhCC-CCcEEEEEcCCCcCChhHHHHHHHhccCchhHHhcccccccCcCCCCHHHHHHHHHhCCC-
Confidence            999 99999999999999 9999998433211  1111111111     1111000 00 0000112234566666663 


Q ss_pred             CCCCCCCCCCCCCcceeEeEee-cHHHHHHHHhhhh---HHHHHHHhCCccchHHHHHHHHHHhccCCCCeEEEEEeEEE
Q 037961          180 FEPVDGYENTGPFDQFVVEKMM-DLDDYFKFIRSCS---AYQKAKDKGVELLTENVMEKFKAAWNEDGQSQKIARFRVYL  255 (262)
Q Consensus       180 f~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~l~s~s---~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~  255 (262)
                       .....        ........ ..+.+.+++...+   ....+.++..+.+.+++.+.+.+.+...+.+.+...|....
T Consensus       178 -~v~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~~~~~~  248 (255)
T PRK14103        178 -KVDAW--------ETTYVHQLTGEDPVLDWITGTALRPVRERLSDDSWEQFRAELIPLLREAYPPRADGTTFFPFRRVF  248 (255)
T ss_pred             -eEEEE--------eeeeeeeCCCchhhhhhhhccchhhhhhhCCHHHHHHHHHHHHHHHHHHCCCCCCCcEEeeeccEE
Confidence             21110        00111122 3455777776433   33344455566777778888887764322236789999999


Q ss_pred             EEEEeC
Q 037961          256 RIGKVG  261 (262)
Q Consensus       256 ~~~rk~  261 (262)
                      +.|+|+
T Consensus       249 ~~a~~~  254 (255)
T PRK14103        249 VVARVG  254 (255)
T ss_pred             EEEEeC
Confidence            999997

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=99.87  E-value=5.8e-22  Score=164.48  Aligned_cols=143  Identities=24%  Similarity=0.302  Sum_probs=84.7

Q ss_pred             hhhhHHHHHHHHhhCC----CChHHHHHHHHhh--CCCCCeEEEEcCcccHhHHHHHhh---CCeEEEEcCCHHHHHHHh
Q 037961            2 AELFIKQANLYAVARP----NYPKELFKLIASK--TPKRNLAWDVGTRSGQAAASLAQI---YQHVIATDTSPKQLKFAI   72 (262)
Q Consensus         2 ~~~F~~~a~~Y~~~rp----~yp~~~~~~l~~~--~~~~~~vlDvGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~   72 (262)
                      .+.|++.|..|+..--    ......-+.+.+.  ..++.+|||+|||||.++..+++.   ..+|+|+|+|+.|++.|+
T Consensus        10 ~~~Fd~ia~~YD~~n~~ls~g~~~~wr~~~~~~~~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~   89 (233)
T PF01209_consen   10 RKMFDRIAPRYDRMNDLLSFGQDRRWRRKLIKLLGLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVAR   89 (233)
T ss_dssp             ---------------------------SHHHHHHT--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHH
T ss_pred             HHHHHHHHHHhCCCccccCCcHHHHHHHHHHhccCCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHH
Confidence            3679999999987511    1111111222222  246789999999999999999886   358999999999999998


Q ss_pred             cC------CCceEEeCCCCchhhhhhccCCCCceeeEEEccccccC-ChhHHHHHHHHhhcCCCeEEEEEecCCCcccHH
Q 037961           73 KL------PNIRYQLTPTMSITELEQNVATQSSVDLVTIASALHWF-DLPQFYKQVKWVLKKPSGVIAAWTYTMPEINES  145 (262)
Q Consensus        73 ~~------~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~~~~-d~~~~l~~~~r~Lk~pgG~l~i~~~~~~~~~~~  145 (262)
                      +.      .+++++++      |++++|+++++||+|++++++|.+ |+.++++|++|+|| |||++++..++.+. .+.
T Consensus        90 ~k~~~~~~~~i~~v~~------da~~lp~~d~sfD~v~~~fglrn~~d~~~~l~E~~RVLk-PGG~l~ile~~~p~-~~~  161 (233)
T PF01209_consen   90 KKLKREGLQNIEFVQG------DAEDLPFPDNSFDAVTCSFGLRNFPDRERALREMYRVLK-PGGRLVILEFSKPR-NPL  161 (233)
T ss_dssp             HHHHHTT--SEEEEE-------BTTB--S-TT-EEEEEEES-GGG-SSHHHHHHHHHHHEE-EEEEEEEEEEEB-S-SHH
T ss_pred             HHHHhhCCCCeeEEEc------CHHHhcCCCCceeEEEHHhhHHhhCCHHHHHHHHHHHcC-CCeEEEEeeccCCC-Cch
Confidence            52      47888875      588999999999999999999999 99999999999999 99999996665543 244


Q ss_pred             HHHhhcc
Q 037961          146 VGAVFKP  152 (262)
Q Consensus       146 ~~~~~~~  152 (262)
                      +..++.-
T Consensus       162 ~~~~~~~  168 (233)
T PF01209_consen  162 LRALYKF  168 (233)
T ss_dssp             HHHHHHH
T ss_pred             hhceeee
Confidence            4444443

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=99.86  E-value=3.2e-20  Score=157.18  Aligned_cols=235  Identities=12%  Similarity=0.144  Sum_probs=143.2

Q ss_pred             HHHHHHhhCCCChHHHHHHHHhhC--CCCCeEEEEcCcccHhHHHHHhh--CCeEEEEcCCHHHHHHHhcC-CCceEEeC
Q 037961            8 QANLYAVARPNYPKELFKLIASKT--PKRNLAWDVGTRSGQAAASLAQI--YQHVIATDTSPKQLKFAIKL-PNIRYQLT   82 (262)
Q Consensus         8 ~a~~Y~~~rp~yp~~~~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~-~~~~~~~~   82 (262)
                      .|+.|+++.+... .....++...  .++.+|||+|||+|.++..+++.  +.+|+|+|+|+.|++.+++. +++.+..+
T Consensus         5 ~~~~Y~~~~~~~~-~~~~~ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~   83 (258)
T PRK01683          5 NPSLYLKFEDERT-RPARDLLARVPLENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLPDCQFVEA   83 (258)
T ss_pred             CHHHHHHHHHHhh-cHHHHHHhhCCCcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCCCCeEEEC
Confidence            4667776544321 1233333333  46789999999999999999886  57999999999999999864 67788776


Q ss_pred             CCCchhhhhhccCCCCceeeEEEccccccC-ChhHHHHHHHHhhcCCCeEEEEEecCCC-ccc-HHHHHhh-----cccc
Q 037961           83 PTMSITELEQNVATQSSVDLVTIASALHWF-DLPQFYKQVKWVLKKPSGVIAAWTYTMP-EIN-ESVGAVF-----KPFD  154 (262)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~D~V~~~~~~~~~-d~~~~l~~~~r~Lk~pgG~l~i~~~~~~-~~~-~~~~~~~-----~~~~  154 (262)
                      +      +..+. ++++||+|+++.++||+ |+..+++++.++|| |||.+++...... ... ..+.++.     ...+
T Consensus        84 d------~~~~~-~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~Lk-pgG~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~  155 (258)
T PRK01683         84 D------IASWQ-PPQALDLIFANASLQWLPDHLELFPRLVSLLA-PGGVLAVQMPDNLDEPSHVLMREVAENGPWEQNL  155 (258)
T ss_pred             c------hhccC-CCCCccEEEEccChhhCCCHHHHHHHHHHhcC-CCcEEEEECCCCCCCHHHHHHHHHHccCchHHHh
Confidence            5      44443 45689999999999999 99999999999999 9999988432211 111 1111111     1111


Q ss_pred             cCCC-CCCccccchhHHhcCCCCCCCCCCCCCCCCCCCCcceeEe-EeecHHHHHHHHhhhh---HHHHHHHhCCccchH
Q 037961          155 TIDC-NPFWAPQRKLVDKKYMSIDFPFEPVDGYENTGPFDQFVVE-KMMDLDDYFKFIRSCS---AYQKAKDKGVELLTE  229 (262)
Q Consensus       155 ~~~~-~~~~~~~~~~~~~~~~~~~~~f~~v~~~~~~~~~~~~~~~-~~~~~~~~~~~l~s~s---~~~~~~~~~~~~l~~  229 (262)
                      .... .+...+......+.+...++ ...+.         ..... ..-+.+++++++++.+   ....+.++.++.+.+
T Consensus       156 ~~~~~~~~~~~~~~~~~~~l~~~g~-~v~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~f~~  225 (258)
T PRK01683        156 PDRGARRAPLPPPHAYYDALAPAAC-RVDIW---------HTTYYHPMPSAQAIVEWVKGTGLRPFLDPLTESEQAAFLA  225 (258)
T ss_pred             ccccccCcCCCCHHHHHHHHHhCCC-ceeee---------eeeeeeecCCchhhhhhhhhccHHHHHhhCCHHHHHHHHH
Confidence            1000 01111111112233333331 11111         11111 2225677888877542   223344455667777


Q ss_pred             HHHHHHHHHhccCCCCeEEEEEeEEEEEEEeC
Q 037961          230 NVMEKFKAAWNEDGQSQKIARFRVYLRIGKVG  261 (262)
Q Consensus       230 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~rk~  261 (262)
                      ++.+.+.+.+.....+.+.++|.-..++|+|.
T Consensus       226 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  257 (258)
T PRK01683        226 AYLARIAEAYPLQADGKVLLAFPRLFIVARRK  257 (258)
T ss_pred             HHHHHHHHHCCCCCCCcEEcccceEEEEEEec
Confidence            78877877765322236899998888999884

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=99.84  E-value=6.3e-20  Score=155.35  Aligned_cols=130  Identities=21%  Similarity=0.215  Sum_probs=102.5

Q ss_pred             hhhHHHHHHHHhhCCCC--h-HHHHH-HHHhh--CCCCCeEEEEcCcccHhHHHHHhh-C--CeEEEEcCCHHHHHHHhc
Q 037961            3 ELFIKQANLYAVARPNY--P-KELFK-LIASK--TPKRNLAWDVGTRSGQAAASLAQI-Y--QHVIATDTSPKQLKFAIK   73 (262)
Q Consensus         3 ~~F~~~a~~Y~~~rp~y--p-~~~~~-~l~~~--~~~~~~vlDvGcG~G~~~~~l~~~-~--~~v~~vD~s~~~~~~a~~   73 (262)
                      ..|++.|..|+......  . ..... .+...  .+++.+|||+|||+|..+..+++. +  .+|+|+|+|++|++.|++
T Consensus        37 ~~f~~~A~~YD~~~~~~s~g~~~~~r~~~~~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~  116 (261)
T PLN02233         37 ALFNRIAPVYDNLNDLLSLGQHRIWKRMAVSWSGAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAAS  116 (261)
T ss_pred             HHHHHhhhHHHHhhhhhcCChhHHHHHHHHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHH
Confidence            57999999999753211  1 22222 22222  356789999999999999999876 3  489999999999999874


Q ss_pred             C---------CCceEEeCCCCchhhhhhccCCCCceeeEEEccccccC-ChhHHHHHHHHhhcCCCeEEEEEecCC
Q 037961           74 L---------PNIRYQLTPTMSITELEQNVATQSSVDLVTIASALHWF-DLPQFYKQVKWVLKKPSGVIAAWTYTM  139 (262)
Q Consensus        74 ~---------~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~~~~-d~~~~l~~~~r~Lk~pgG~l~i~~~~~  139 (262)
                      .         .++.++++      |++++|+++++||+|+++.++|++ |+.++++++.|+|| |||.|++..+..
T Consensus       117 r~~~~~~~~~~~i~~~~~------d~~~lp~~~~sfD~V~~~~~l~~~~d~~~~l~ei~rvLk-pGG~l~i~d~~~  185 (261)
T PLN02233        117 RQELKAKSCYKNIEWIEG------DATDLPFDDCYFDAITMGYGLRNVVDRLKAMQEMYRVLK-PGSRVSILDFNK  185 (261)
T ss_pred             HhhhhhhccCCCeEEEEc------ccccCCCCCCCEeEEEEecccccCCCHHHHHHHHHHHcC-cCcEEEEEECCC
Confidence            3         25667665      477788899999999999999999 99999999999999 999999866554

>PRK05785 hypothetical protein; Provisional

Probab=99.83  E-value=1.7e-19  Score=149.45  Aligned_cols=119  Identities=20%  Similarity=0.206  Sum_probs=97.4

Q ss_pred             hhhhHHHHHHHHhhCCC--------ChHHHHHHHHhhCCCCCeEEEEcCcccHhHHHHHhh-CCeEEEEcCCHHHHHHHh
Q 037961            2 AELFIKQANLYAVARPN--------YPKELFKLIASKTPKRNLAWDVGTRSGQAAASLAQI-YQHVIATDTSPKQLKFAI   72 (262)
Q Consensus         2 ~~~F~~~a~~Y~~~rp~--------yp~~~~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~   72 (262)
                      .+.|++.|..|+.....        ....+.+.+....+++.+|||+|||||..+..+++. +.+|+|+|+|++|++.|+
T Consensus        12 ~~~f~~iA~~YD~~n~~~s~g~~~~wr~~~~~~l~~~~~~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~   91 (226)
T PRK05785         12 QEAYNKIPKAYDRANRFISFNQDVRWRAELVKTILKYCGRPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNL   91 (226)
T ss_pred             HHHHHhhhHHHHHhhhhccCCCcHHHHHHHHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHH
Confidence            46799999999986421        113345555555556789999999999999999988 589999999999999998


Q ss_pred             cCCCceEEeCCCCchhhhhhccCCCCceeeEEEccccccC-ChhHHHHHHHHhhcCCC
Q 037961           73 KLPNIRYQLTPTMSITELEQNVATQSSVDLVTIASALHWF-DLPQFYKQVKWVLKKPS  129 (262)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~~~~-d~~~~l~~~~r~Lk~pg  129 (262)
                      +..  .+++      ++++++|+++++||+|++++++||+ |++++++++.|+|| |.
T Consensus        92 ~~~--~~~~------~d~~~lp~~d~sfD~v~~~~~l~~~~d~~~~l~e~~RvLk-p~  140 (226)
T PRK05785         92 VAD--DKVV------GSFEALPFRDKSFDVVMSSFALHASDNIEKVIAEFTRVSR-KQ  140 (226)
T ss_pred             hcc--ceEE------echhhCCCCCCCEEEEEecChhhccCCHHHHHHHHHHHhc-Cc
Confidence            642  3344      4578889999999999999999999 99999999999999 84

>TIGR02072 BioC biotin biosynthesis protein BioC

Probab=99.83  E-value=2.7e-19  Score=149.27  Aligned_cols=228  Identities=20%  Similarity=0.241  Sum_probs=141.9

Q ss_pred             hhHHHHHHHHhhCCCChHHHHHHHHhhC-----CCCCeEEEEcCcccHhHHHHHhhC--CeEEEEcCCHHHHHHHhcC--
Q 037961            4 LFIKQANLYAVARPNYPKELFKLIASKT-----PKRNLAWDVGTRSGQAAASLAQIY--QHVIATDTSPKQLKFAIKL--   74 (262)
Q Consensus         4 ~F~~~a~~Y~~~rp~yp~~~~~~l~~~~-----~~~~~vlDvGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~--   74 (262)
                      +|++++..|+++. .+-..+...+....     ....+|||+|||+|.++..+++.+  .+++++|+++.+++.+++.  
T Consensus         1 ~~~~~~~~y~~~~-~~q~~~~~~l~~~~~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~   79 (240)
T TIGR02072         1 SFNKAAKTYDRHA-KIQREMAKRLLALLKEKGIFIPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS   79 (240)
T ss_pred             CcchhhhchhHHH-HHHHHHHHHHHHHhhhhccCCCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC
Confidence            4788888888752 22233333333322     234689999999999999999875  4689999999999988764  


Q ss_pred             CCceEEeCCCCchhhhhhccCCCCceeeEEEccccccC-ChhHHHHHHHHhhcCCCeEEEEEecCCCcccHHHHHhhccc
Q 037961           75 PNIRYQLTPTMSITELEQNVATQSSVDLVTIASALHWF-DLPQFYKQVKWVLKKPSGVIAAWTYTMPEINESVGAVFKPF  153 (262)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~~~~-d~~~~l~~~~r~Lk~pgG~l~i~~~~~~~~~~~~~~~~~~~  153 (262)
                      +++.++.++      +++.++++++||+|+++.++||+ |+..++.++.++|+ |||.+++.......+ ..+...+...
T Consensus        80 ~~~~~~~~d------~~~~~~~~~~fD~vi~~~~l~~~~~~~~~l~~~~~~L~-~~G~l~~~~~~~~~~-~~~~~~~~~~  151 (240)
T TIGR02072        80 ENVQFICGD------AEKLPLEDSSFDLIVSNLALQWCDDLSQALSELARVLK-PGGLLAFSTFGPGTL-HELRQSFGQH  151 (240)
T ss_pred             CCCeEEecc------hhhCCCCCCceeEEEEhhhhhhccCHHHHHHHHHHHcC-CCcEEEEEeCCccCH-HHHHHHHHHh
Confidence            356777654      66666778899999999999999 99999999999999 999999865554433 3333333321


Q ss_pred             ccCCCCCCccccchhHHhcCCCCCCCCCCCCCCCCCCCCccee-EeEeecHHHHHHHHhhhhHHHHHHH-hCCccchHHH
Q 037961          154 DTIDCNPFWAPQRKLVDKKYMSIDFPFEPVDGYENTGPFDQFV-VEKMMDLDDYFKFIRSCSAYQKAKD-KGVELLTENV  231 (262)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~l~s~s~~~~~~~-~~~~~l~~~~  231 (262)
                      .    .++.+.  ..+.+.+...   |..+...       ... .....+..+++.+++.........+ ..++.+.+ +
T Consensus       152 ~----~~~~~~--~~~~~~l~~~---f~~~~~~-------~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~-~  214 (240)
T TIGR02072       152 G----LRYLSL--DELKALLKNS---FELLTLE-------EELITLSFDDPLDVLRHLKKTGANGLSSGRTSRKQLKA-F  214 (240)
T ss_pred             c----cCCCCH--HHHHHHHHHh---cCCcEEE-------EEEEEEeCCCHHHHHHHHHHhccCcCCCCCCCHHHHHH-H
Confidence            1    122221  1112222221   2211100       111 1122356777777777543222111 12222222 4


Q ss_pred             HHHHHHHhccCCCCeEEEEEeEEEEEEEe
Q 037961          232 MEKFKAAWNEDGQSQKIARFRVYLRIGKV  260 (262)
Q Consensus       232 ~~~l~~~~~~~~~~~~~~~~~~~~~~~rk  260 (262)
                      .+.+.+.+.. +  .+.++|.+.+++|+|
T Consensus       215 ~~~~~~~~~~-~--gi~~~~~~~~~~~~k  240 (240)
T TIGR02072       215 LERYEQEFQP-D--GLPLTYHVVYGIAKK  240 (240)
T ss_pred             HHHHHHhhcC-C--CceeEEEEEEEEEEC
Confidence            4455554543 2  289999999999987

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.

>PLN02244 tocopherol O-methyltransferase

Probab=99.82  E-value=3.9e-19  Score=155.96  Aligned_cols=99  Identities=23%  Similarity=0.235  Sum_probs=85.8

Q ss_pred             CCCCeEEEEcCcccHhHHHHHhh-CCeEEEEcCCHHHHHHHhcC-------CCceEEeCCCCchhhhhhccCCCCceeeE
Q 037961           32 PKRNLAWDVGTRSGQAAASLAQI-YQHVIATDTSPKQLKFAIKL-------PNIRYQLTPTMSITELEQNVATQSSVDLV  103 (262)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~D~V  103 (262)
                      .++.+|||||||+|.++..+++. +.+|+|+|+|+.|++.+++.       .+++++++|      +.++++++++||+|
T Consensus       117 ~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D------~~~~~~~~~~FD~V  190 (340)
T PLN02244        117 KRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVSFQVAD------ALNQPFEDGQFDLV  190 (340)
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcC------cccCCCCCCCccEE
Confidence            35678999999999999999986 78999999999999988752       357777654      66677889999999


Q ss_pred             EEccccccC-ChhHHHHHHHHhhcCCCeEEEEEec
Q 037961          104 TIASALHWF-DLPQFYKQVKWVLKKPSGVIAAWTY  137 (262)
Q Consensus       104 ~~~~~~~~~-d~~~~l~~~~r~Lk~pgG~l~i~~~  137 (262)
                      ++..++||+ |+.++++++.|+|| |||.|++..+
T Consensus       191 ~s~~~~~h~~d~~~~l~e~~rvLk-pGG~lvi~~~  224 (340)
T PLN02244        191 WSMESGEHMPDKRKFVQELARVAA-PGGRIIIVTW  224 (340)
T ss_pred             EECCchhccCCHHHHHHHHHHHcC-CCcEEEEEEe
Confidence            999999988 99999999999999 9999998443

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.82  E-value=5.6e-20  Score=131.23  Aligned_cols=90  Identities=29%  Similarity=0.358  Sum_probs=77.6

Q ss_pred             EEEcCcccHhHHHHHhh-CCeEEEEcCCHHHHHHHhcC---CCceEEeCCCCchhhhhhccCCCCceeeEEEccccccC-
Q 037961           38 WDVGTRSGQAAASLAQI-YQHVIATDTSPKQLKFAIKL---PNIRYQLTPTMSITELEQNVATQSSVDLVTIASALHWF-  112 (262)
Q Consensus        38 lDvGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~~~~-  112 (262)
                      ||+|||+|..+..++++ +.+|+++|+++.|++.+++.   .++.+..+      +++++++++++||+|++..++||+ 
T Consensus         1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~------d~~~l~~~~~sfD~v~~~~~~~~~~   74 (95)
T PF08241_consen    1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKNEGVSFRQG------DAEDLPFPDNSFDVVFSNSVLHHLE   74 (95)
T ss_dssp             EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTTSTEEEEES------BTTSSSS-TT-EEEEEEESHGGGSS
T ss_pred             CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhcccccCchheee------hHHhCccccccccccccccceeecc
Confidence            89999999999999999 89999999999999999863   34556654      578889999999999999999999 


Q ss_pred             ChhHHHHHHHHhhcCCCeEEEE
Q 037961          113 DLPQFYKQVKWVLKKPSGVIAA  134 (262)
Q Consensus       113 d~~~~l~~~~r~Lk~pgG~l~i  134 (262)
                      ++.++++++.|+|| |||++++
T Consensus        75 ~~~~~l~e~~rvLk-~gG~l~~   95 (95)
T PF08241_consen   75 DPEAALREIYRVLK-PGGRLVI   95 (95)
T ss_dssp             HHHHHHHHHHHHEE-EEEEEEE
T ss_pred             CHHHHHHHHHHHcC-cCeEEeC
Confidence            89999999999999 9999986

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....

>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]

Probab=99.81  E-value=3.4e-19  Score=141.35  Aligned_cols=216  Identities=16%  Similarity=0.259  Sum_probs=143.2

Q ss_pred             HHHhhCC--CCCeEEEEcCcccHhHHHHHhh--CCeEEEEcCCHHHHHHHhc-CCCceEEeCCCCchhhhhhccCCCCce
Q 037961           26 LIASKTP--KRNLAWDVGTRSGQAAASLAQI--YQHVIATDTSPKQLKFAIK-LPNIRYQLTPTMSITELEQNVATQSSV  100 (262)
Q Consensus        26 ~l~~~~~--~~~~vlDvGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (262)
                      .|+.+++  +...|.|+|||+|..|..|+++  ++.|+|+|-|++|++.|++ .++++|..+|      +.+|. +..+.
T Consensus        21 dLla~Vp~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp~~~f~~aD------l~~w~-p~~~~   93 (257)
T COG4106          21 DLLARVPLERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLPDATFEEAD------LRTWK-PEQPT   93 (257)
T ss_pred             HHHhhCCccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCCCCceeccc------HhhcC-CCCcc
Confidence            3444544  5678999999999999999997  6799999999999998875 5899999865      66664 67789


Q ss_pred             eeEEEccccccC-ChhHHHHHHHHhhcCCCeEEEEEecC---CCcccHHHHHhhc-----ccccC-CC--CCCccccchh
Q 037961          101 DLVTIASALHWF-DLPQFYKQVKWVLKKPSGVIAAWTYT---MPEINESVGAVFK-----PFDTI-DC--NPFWAPQRKL  168 (262)
Q Consensus       101 D~V~~~~~~~~~-d~~~~l~~~~r~Lk~pgG~l~i~~~~---~~~~~~~~~~~~~-----~~~~~-~~--~~~~~~~~~~  168 (262)
                      |+++++-++||+ |..+.+..+...|. |||+|++--..   .++ ...+++.-.     .-..+ ..  .+.-++ ..+
T Consensus        94 dllfaNAvlqWlpdH~~ll~rL~~~L~-Pgg~LAVQmPdN~deps-H~~mr~~A~~~p~~~~l~~~~~~r~~v~s~-a~Y  170 (257)
T COG4106          94 DLLFANAVLQWLPDHPELLPRLVSQLA-PGGVLAVQMPDNLDEPS-HRLMRETADEAPFAQELGGRGLTRAPLPSP-AAY  170 (257)
T ss_pred             chhhhhhhhhhccccHHHHHHHHHhhC-CCceEEEECCCccCchh-HHHHHHHHhcCchhhhhCccccccCCCCCH-HHH
Confidence            999999999999 99999999999999 99999983222   111 122222221     11110 00  000000 111


Q ss_pred             HHhcCCCCCCCCCCCCCCCCCCCCcceeEeEeecHHHHHHHHhhh---hHHHHHHHhCCccchHHHHHHHHHHhccCCCC
Q 037961          169 VDKKYMSIDFPFEPVDGYENTGPFDQFVVEKMMDLDDYFKFIRSC---SAYQKAKDKGVELLTENVMEKFKAAWNEDGQS  245 (262)
Q Consensus       169 ~~~~~~~~~~~f~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~---s~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~  245 (262)
                       .+.+....   ..|+      -++.......-..+.++++++.+   +....+.++.+..+.....+.|.+++.....+
T Consensus       171 -y~lLa~~~---~rvD------iW~T~Y~h~l~~a~aIvdWvkgTgLrP~L~~L~e~~~~~FL~~Y~~~l~~aYP~~~dG  240 (257)
T COG4106         171 -YELLAPLA---CRVD------IWHTTYYHQLPGADAIVDWVKGTGLRPYLDRLDEEERQRFLDRYLALLAEAYPPRADG  240 (257)
T ss_pred             -HHHhCccc---ceee------eeeeeccccCCCccchhhheeccccceeccccCHHHHHHHHHHHHHHHHHhCCCccCC
Confidence             12211110   1111      00011112223567788888875   33444566666777777888999998887555


Q ss_pred             eEEEEEeEEEEEEEeC
Q 037961          246 QKIARFRVYLRIGKVG  261 (262)
Q Consensus       246 ~~~~~~~~~~~~~rk~  261 (262)
                      .+-+.|+=.++.|+|+
T Consensus       241 r~ll~FpRlFiVA~~~  256 (257)
T COG4106         241 RVLLAFPRLFIVATRG  256 (257)
T ss_pred             cEEeecceEEEEEecC
Confidence            8899999999998875

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.79  E-value=1.1e-18  Score=147.46  Aligned_cols=130  Identities=22%  Similarity=0.310  Sum_probs=101.8

Q ss_pred             hhhhHHHHHHHHhhCCCChHHH---------HHHHHhhC-CCCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHH
Q 037961            2 AELFIKQANLYAVARPNYPKEL---------FKLIASKT-PKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFA   71 (262)
Q Consensus         2 ~~~F~~~a~~Y~~~rp~yp~~~---------~~~l~~~~-~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a   71 (262)
                      .++|+..|+.|++.--.-+...         ++.++..+ +++.+|||+|||+|..+..+++.+.+|+++|+|+.|++.|
T Consensus         3 ~~~fd~~a~~f~~~~y~~~~g~~r~~~~~~~~~~~l~~l~~~~~~vLDiGcG~G~~a~~la~~g~~v~~vD~s~~~l~~a   82 (255)
T PRK11036          3 DRNFDDIAEKFSRNIYGTTKGQIRQAILWQDLDRLLAELPPRPLRVLDAGGGEGQTAIKLAELGHQVILCDLSAEMIQRA   82 (255)
T ss_pred             CCChhhHHHHHHHhccCCCccHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCchHHHHHHHHcCCEEEEEECCHHHHHHH
Confidence            4789999999988542222211         22333333 4567899999999999999999999999999999999998


Q ss_pred             hcC-------CCceEEeCCCCchhhhhhc-cCCCCceeeEEEccccccC-ChhHHHHHHHHhhcCCCeEEEEEecC
Q 037961           72 IKL-------PNIRYQLTPTMSITELEQN-VATQSSVDLVTIASALHWF-DLPQFYKQVKWVLKKPSGVIAAWTYT  138 (262)
Q Consensus        72 ~~~-------~~~~~~~~~~~~~~~~~~~-~~~~~~~D~V~~~~~~~~~-d~~~~l~~~~r~Lk~pgG~l~i~~~~  138 (262)
                      ++.       .++++++++      +.++ +..+++||+|++..++||+ ++..+++++.++|| |||.|++..++
T Consensus        83 ~~~~~~~g~~~~v~~~~~d------~~~l~~~~~~~fD~V~~~~vl~~~~~~~~~l~~~~~~Lk-pgG~l~i~~~n  151 (255)
T PRK11036         83 KQAAEAKGVSDNMQFIHCA------AQDIAQHLETPVDLILFHAVLEWVADPKSVLQTLWSVLR-PGGALSLMFYN  151 (255)
T ss_pred             HHHHHhcCCccceEEEEcC------HHHHhhhcCCCCCEEEehhHHHhhCCHHHHHHHHHHHcC-CCeEEEEEEEC
Confidence            753       356777765      3333 2456899999999999999 99999999999999 99999985544

>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C

Probab=99.76  E-value=3.2e-18  Score=134.15  Aligned_cols=116  Identities=22%  Similarity=0.302  Sum_probs=92.9

Q ss_pred             HHhhCCCChHHHHHHHHhhCCCCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhcCCCceEEeCCCCchhhhh
Q 037961           12 YAVARPNYPKELFKLIASKTPKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKLPNIRYQLTPTMSITELE   91 (262)
Q Consensus        12 Y~~~rp~yp~~~~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~   91 (262)
                      |++.+.....+++..+....++..+|||+|||+|.++..+++.+.+++|+|+++.+++.    ..+.....      +..
T Consensus         1 y~~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~g~D~~~~~~~~----~~~~~~~~------~~~   70 (161)
T PF13489_consen    1 YARHRYRAYADLLERLLPRLKPGKRVLDIGCGTGSFLRALAKRGFEVTGVDISPQMIEK----RNVVFDNF------DAQ   70 (161)
T ss_dssp             ---GCCHCHHHHHHHHHTCTTTTSEEEEESSTTSHHHHHHHHTTSEEEEEESSHHHHHH----TTSEEEEE------ECH
T ss_pred             CchhHHHHHHHHHHHHhcccCCCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHhh----hhhhhhhh------hhh
Confidence            66777766777778777767788999999999999999999999999999999999988    22222221      122


Q ss_pred             hccCCCCceeeEEEccccccC-ChhHHHHHHHHhhcCCCeEEEEEecC
Q 037961           92 QNVATQSSVDLVTIASALHWF-DLPQFYKQVKWVLKKPSGVIAAWTYT  138 (262)
Q Consensus        92 ~~~~~~~~~D~V~~~~~~~~~-d~~~~l~~~~r~Lk~pgG~l~i~~~~  138 (262)
                      ....++++||+|+|+.++||+ |+..+++++.++|| |||.+++....
T Consensus        71 ~~~~~~~~fD~i~~~~~l~~~~d~~~~l~~l~~~Lk-pgG~l~~~~~~  117 (161)
T PF13489_consen   71 DPPFPDGSFDLIICNDVLEHLPDPEEFLKELSRLLK-PGGYLVISDPN  117 (161)
T ss_dssp             THHCHSSSEEEEEEESSGGGSSHHHHHHHHHHHCEE-EEEEEEEEEEB
T ss_pred             hhhccccchhhHhhHHHHhhcccHHHHHHHHHHhcC-CCCEEEEEEcC
Confidence            333467899999999999999 99999999999999 99999985544

...

>PRK08317 hypothetical protein; Provisional

Probab=99.76  E-value=1.5e-16  Score=132.67  Aligned_cols=109  Identities=21%  Similarity=0.243  Sum_probs=88.4

Q ss_pred             HHHHHHHhhC--CCCCeEEEEcCcccHhHHHHHhhC---CeEEEEcCCHHHHHHHhcC-----CCceEEeCCCCchhhhh
Q 037961           22 ELFKLIASKT--PKRNLAWDVGTRSGQAAASLAQIY---QHVIATDTSPKQLKFAIKL-----PNIRYQLTPTMSITELE   91 (262)
Q Consensus        22 ~~~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~-----~~~~~~~~~~~~~~~~~   91 (262)
                      ...+.+....  .++.+|||+|||+|.++..+++..   .+++|+|+|+.+++.+++.     .++.+..++      ++
T Consensus         6 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d------~~   79 (241)
T PRK08317          6 RYRARTFELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGD------AD   79 (241)
T ss_pred             HHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecc------cc
Confidence            3344444433  467899999999999999998863   5899999999999988764     456666654      55


Q ss_pred             hccCCCCceeeEEEccccccC-ChhHHHHHHHHhhcCCCeEEEEEec
Q 037961           92 QNVATQSSVDLVTIASALHWF-DLPQFYKQVKWVLKKPSGVIAAWTY  137 (262)
Q Consensus        92 ~~~~~~~~~D~V~~~~~~~~~-d~~~~l~~~~r~Lk~pgG~l~i~~~  137 (262)
                      ..++++++||+|++..+++++ |+..+++++.++|+ |||.+++...
T Consensus        80 ~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~L~-~gG~l~~~~~  125 (241)
T PRK08317         80 GLPFPDGSFDAVRSDRVLQHLEDPARALAEIARVLR-PGGRVVVLDT  125 (241)
T ss_pred             cCCCCCCCceEEEEechhhccCCHHHHHHHHHHHhc-CCcEEEEEec
Confidence            556678899999999999999 99999999999999 9999998543

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=99.76  E-value=8.6e-18  Score=145.49  Aligned_cols=99  Identities=21%  Similarity=0.226  Sum_probs=86.5

Q ss_pred             CCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhcC-------CCceEEeCCCCchhhhhhccCCCCceeeEEE
Q 037961           33 KRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKL-------PNIRYQLTPTMSITELEQNVATQSSVDLVTI  105 (262)
Q Consensus        33 ~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~  105 (262)
                      ++.+|||||||+|.++..+++.+.+|+|+|+++.|++.|++.       .++++..+      ++++++.++++||+|++
T Consensus       131 ~g~~ILDIGCG~G~~s~~La~~g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~------dae~l~~~~~~FD~Vi~  204 (322)
T PLN02396        131 EGLKFIDIGCGGGLLSEPLARMGATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCT------TAEKLADEGRKFDAVLS  204 (322)
T ss_pred             CCCEEEEeeCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEec------CHHHhhhccCCCCEEEE
Confidence            456899999999999999999999999999999999999853       25666664      46777777889999999


Q ss_pred             ccccccC-ChhHHHHHHHHhhcCCCeEEEEEecC
Q 037961          106 ASALHWF-DLPQFYKQVKWVLKKPSGVIAAWTYT  138 (262)
Q Consensus       106 ~~~~~~~-d~~~~l~~~~r~Lk~pgG~l~i~~~~  138 (262)
                      ..++||+ |+..+++++.++|| |||.+++....
T Consensus       205 ~~vLeHv~d~~~~L~~l~r~Lk-PGG~liist~n  237 (322)
T PLN02396        205 LEVIEHVANPAEFCKSLSALTI-PNGATVLSTIN  237 (322)
T ss_pred             hhHHHhcCCHHHHHHHHHHHcC-CCcEEEEEECC
Confidence            9999999 99999999999999 99999996554

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=99.76  E-value=3.4e-18  Score=138.79  Aligned_cols=105  Identities=21%  Similarity=0.197  Sum_probs=86.1

Q ss_pred             CCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhcCCCceEEeCCCCchhhhhhccCCCCceeeEEEccccccC
Q 037961           33 KRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKLPNIRYQLTPTMSITELEQNVATQSSVDLVTIASALHWF  112 (262)
Q Consensus        33 ~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~~~~  112 (262)
                      ++.+|||+|||-|.++..+|+.|++|+|+|+++.+++.|+.+.....+..+ +....++++....++||+|+|..+++|+
T Consensus        59 ~g~~vLDvGCGgG~Lse~mAr~Ga~VtgiD~se~~I~~Ak~ha~e~gv~i~-y~~~~~edl~~~~~~FDvV~cmEVlEHv  137 (243)
T COG2227          59 PGLRVLDVGCGGGILSEPLARLGASVTGIDASEKPIEVAKLHALESGVNID-YRQATVEDLASAGGQFDVVTCMEVLEHV  137 (243)
T ss_pred             CCCeEEEecCCccHhhHHHHHCCCeeEEecCChHHHHHHHHhhhhcccccc-chhhhHHHHHhcCCCccEEEEhhHHHcc
Confidence            678999999999999999999999999999999999999965322222211 1123455554445899999999999999


Q ss_pred             -ChhHHHHHHHHhhcCCCeEEEEEecCC
Q 037961          113 -DLPQFYKQVKWVLKKPSGVIAAWTYTM  139 (262)
Q Consensus       113 -d~~~~l~~~~r~Lk~pgG~l~i~~~~~  139 (262)
                       |++.+++.|.+++| |||.+++.+.+.
T Consensus       138 ~dp~~~~~~c~~lvk-P~G~lf~STinr  164 (243)
T COG2227         138 PDPESFLRACAKLVK-PGGILFLSTINR  164 (243)
T ss_pred             CCHHHHHHHHHHHcC-CCcEEEEecccc
Confidence             99999999999999 999999977653

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=99.75  E-value=1.9e-17  Score=137.82  Aligned_cols=132  Identities=23%  Similarity=0.204  Sum_probs=102.9

Q ss_pred             hhhhHHHHHHHHhhCCCC----hHHHHHHHHhhC--CCCCeEEEEcCcccHhHHHHHhh---CCeEEEEcCCHHHHHHHh
Q 037961            2 AELFIKQANLYAVARPNY----PKELFKLIASKT--PKRNLAWDVGTRSGQAAASLAQI---YQHVIATDTSPKQLKFAI   72 (262)
Q Consensus         2 ~~~F~~~a~~Y~~~rp~y----p~~~~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~   72 (262)
                      .+.|++.+..|+......    .....+.++...  +++.+|||+|||+|..+..+++.   ..+|+|+|+|+.|++.++
T Consensus         8 ~~~f~~~a~~yd~~~~~~~~~~~~~~~~~~l~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~   87 (231)
T TIGR02752         8 HKVFEKIYKKYDRMNSVISFQRHKKWRKDTMKRMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGR   87 (231)
T ss_pred             HHHHHHhhhHHhHHHHHhcCCchHHHHHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHH
Confidence            578999999999853311    122233344444  36789999999999999999875   358999999999999887


Q ss_pred             cC------CCceEEeCCCCchhhhhhccCCCCceeeEEEccccccC-ChhHHHHHHHHhhcCCCeEEEEEecCCC
Q 037961           73 KL------PNIRYQLTPTMSITELEQNVATQSSVDLVTIASALHWF-DLPQFYKQVKWVLKKPSGVIAAWTYTMP  140 (262)
Q Consensus        73 ~~------~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~~~~-d~~~~l~~~~r~Lk~pgG~l~i~~~~~~  140 (262)
                      +.      +++++..++      ++.+++++++||+|+++.++||+ ++.++++++.++|+ |||.+++.....+
T Consensus        88 ~~~~~~~~~~v~~~~~d------~~~~~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~~~Lk-~gG~l~~~~~~~~  155 (231)
T TIGR02752        88 QKVKDAGLHNVELVHGN------AMELPFDDNSFDYVTIGFGLRNVPDYMQVLREMYRVVK-PGGKVVCLETSQP  155 (231)
T ss_pred             HHHHhcCCCceEEEEec------hhcCCCCCCCccEEEEecccccCCCHHHHHHHHHHHcC-cCeEEEEEECCCC
Confidence            52      456776654      55666778899999999999999 89999999999999 9999988654443

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]

Probab=99.74  E-value=2.2e-17  Score=134.22  Aligned_cols=145  Identities=19%  Similarity=0.244  Sum_probs=105.2

Q ss_pred             hhhHHHHHHHHhhC--CCCh--HHHHHHHHhhC--CCCCeEEEEcCcccHhHHHHHhh--------CCeEEEEcCCHHHH
Q 037961            3 ELFIKQANLYAVAR--PNYP--KELFKLIASKT--PKRNLAWDVGTRSGQAAASLAQI--------YQHVIATDTSPKQL   68 (262)
Q Consensus         3 ~~F~~~a~~Y~~~r--p~yp--~~~~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~--------~~~v~~vD~s~~~~   68 (262)
                      +.|++.|..|+--=  -+-+  .-.-+.....+  +++..+||++||||..+..+.++        ..+|+++|+||+||
T Consensus        64 ~vF~~vA~~YD~mND~mSlGiHRlWKd~~v~~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL  143 (296)
T KOG1540|consen   64 HVFESVAKKYDIMNDAMSLGIHRLWKDMFVSKLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHML  143 (296)
T ss_pred             HHHHHHHHHHHHHHHHhhcchhHHHHHHhhhccCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHH
Confidence            45777787775420  0000  11122233333  36689999999999999998874        26899999999999


Q ss_pred             HHHhcCC---------CceEEeCCCCchhhhhhccCCCCceeeEEEccccccC-ChhHHHHHHHHhhcCCCeEEEEEecC
Q 037961           69 KFAIKLP---------NIRYQLTPTMSITELEQNVATQSSVDLVTIASALHWF-DLPQFYKQVKWVLKKPSGVIAAWTYT  138 (262)
Q Consensus        69 ~~a~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~~~~-d~~~~l~~~~r~Lk~pgG~l~i~~~~  138 (262)
                      +.++++.         .+.+++      +|++++|+++.+||..++++++..+ |++++++|++|||| |||+|.+..++
T Consensus       144 ~vgkqRa~~~~l~~~~~~~w~~------~dAE~LpFdd~s~D~yTiafGIRN~th~~k~l~EAYRVLK-pGGrf~cLeFs  216 (296)
T KOG1540|consen  144 AVGKQRAKKRPLKASSRVEWVE------GDAEDLPFDDDSFDAYTIAFGIRNVTHIQKALREAYRVLK-PGGRFSCLEFS  216 (296)
T ss_pred             HHHHHHHhhcCCCcCCceEEEe------CCcccCCCCCCcceeEEEecceecCCCHHHHHHHHHHhcC-CCcEEEEEEcc
Confidence            9987641         245554      5799999999999999999999877 99999999999999 99999986554


Q ss_pred             CCcccHHHHHhhccccc
Q 037961          139 MPEINESVGAVFKPFDT  155 (262)
Q Consensus       139 ~~~~~~~~~~~~~~~~~  155 (262)
                      .-. ++.+..+++.+..
T Consensus       217 kv~-~~~l~~fy~~ysf  232 (296)
T KOG1540|consen  217 KVE-NEPLKWFYDQYSF  232 (296)
T ss_pred             ccc-cHHHHHHHHhhhh
Confidence            322 2445555555544

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=99.73  E-value=2e-16  Score=134.12  Aligned_cols=99  Identities=17%  Similarity=0.288  Sum_probs=83.4

Q ss_pred             CCCCeEEEEcCcccHhHHHHHhh-CCeEEEEcCCHHHHHHHhcC----CCceEEeCCCCchhhhhhccCCCCceeeEEEc
Q 037961           32 PKRNLAWDVGTRSGQAAASLAQI-YQHVIATDTSPKQLKFAIKL----PNIRYQLTPTMSITELEQNVATQSSVDLVTIA  106 (262)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~  106 (262)
                      +++.+|||||||+|..+..++.. +.+|+|+|+|+.|++.|+++    .++.+..++      +...++++++||+|++.
T Consensus        51 ~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D------~~~~~~~~~~FD~V~s~  124 (263)
T PTZ00098         51 NENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSDKNKIEFEAND------ILKKDFPENTFDMIYSR  124 (263)
T ss_pred             CCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCcCCceEEEECC------cccCCCCCCCeEEEEEh
Confidence            57789999999999999999775 67999999999999998863    356666654      55667788999999998


Q ss_pred             cccccC---ChhHHHHHHHHhhcCCCeEEEEEec
Q 037961          107 SALHWF---DLPQFYKQVKWVLKKPSGVIAAWTY  137 (262)
Q Consensus       107 ~~~~~~---d~~~~l~~~~r~Lk~pgG~l~i~~~  137 (262)
                      .+++++   ++..++++++++|| |||.|++..+
T Consensus       125 ~~l~h~~~~d~~~~l~~i~r~Lk-PGG~lvi~d~  157 (263)
T PTZ00098        125 DAILHLSYADKKKLFEKCYKWLK-PNGILLITDY  157 (263)
T ss_pred             hhHHhCCHHHHHHHHHHHHHHcC-CCcEEEEEEe
Confidence            887766   67789999999999 9999998554

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional

Probab=99.71  E-value=1.5e-16  Score=133.82  Aligned_cols=124  Identities=16%  Similarity=0.273  Sum_probs=94.1

Q ss_pred             hhHH-HHHHH----HhhCCCChHHH--HHHHH-hhCCCCCeEEEEcCcccHhHHHHHh----hCCeEEEEcCCHHHHHHH
Q 037961            4 LFIK-QANLY----AVARPNYPKEL--FKLIA-SKTPKRNLAWDVGTRSGQAAASLAQ----IYQHVIATDTSPKQLKFA   71 (262)
Q Consensus         4 ~F~~-~a~~Y----~~~rp~yp~~~--~~~l~-~~~~~~~~vlDvGcG~G~~~~~l~~----~~~~v~~vD~s~~~~~~a   71 (262)
                      .|++ .|..|    .+..|.|....  +..+. ...+++.+|||+|||+|..+..+++    .+.+++|+|+|+.|++.|
T Consensus        19 ~f~~~~a~~yd~~~~~~~p~y~~~~~~~~~~~~~~~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A   98 (247)
T PRK15451         19 TFDERVAEVFPDMIQRSVPGYSNIISMIGMLAERFVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERC   98 (247)
T ss_pred             ccChHHHHhhhhHHHhcCCChHHHHHHHHHHHHHhCCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHH
Confidence            3555 46788    55678885332  22232 3346778999999999999988876    257999999999999999


Q ss_pred             hcC-------CCceEEeCCCCchhhhhhccCCCCceeeEEEccccccCCh---hHHHHHHHHhhcCCCeEEEEEe
Q 037961           72 IKL-------PNIRYQLTPTMSITELEQNVATQSSVDLVTIASALHWFDL---PQFYKQVKWVLKKPSGVIAAWT  136 (262)
Q Consensus        72 ~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~~~~d~---~~~l~~~~r~Lk~pgG~l~i~~  136 (262)
                      +++       .++++++++      +.++++  +.+|+|+++.++|++++   ..++++++++|| |||.|++..
T Consensus        99 ~~~~~~~~~~~~v~~~~~d------~~~~~~--~~~D~vv~~~~l~~l~~~~~~~~l~~i~~~Lk-pGG~l~l~e  164 (247)
T PRK15451         99 RRHIDAYKAPTPVDVIEGD------IRDIAI--ENASMVVLNFTLQFLEPSERQALLDKIYQGLN-PGGALVLSE  164 (247)
T ss_pred             HHHHHhcCCCCCeEEEeCC------hhhCCC--CCCCEEehhhHHHhCCHHHHHHHHHHHHHhcC-CCCEEEEEE
Confidence            753       257777654      555543  35899999999999943   459999999999 999999965

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=99.70  E-value=2.4e-16  Score=128.07  Aligned_cols=111  Identities=17%  Similarity=0.229  Sum_probs=84.5

Q ss_pred             hCCCChH-HHHHHHHhhCCCCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhcC------CCceEEeCCCCch
Q 037961           15 ARPNYPK-ELFKLIASKTPKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKL------PNIRYQLTPTMSI   87 (262)
Q Consensus        15 ~rp~yp~-~~~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~   87 (262)
                      +-+..|. .+.+.+ .. .++.+|||+|||+|..+..+++++.+|+|+|+|+.|++.+++.      .++++...+    
T Consensus        13 ~~~~~~~~~l~~~l-~~-~~~~~vLDiGcG~G~~a~~La~~g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d----   86 (197)
T PRK11207         13 YGLTRTHSEVLEAV-KV-VKPGKTLDLGCGNGRNSLYLAANGFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVD----   86 (197)
T ss_pred             cCCCCChHHHHHhc-cc-CCCCcEEEECCCCCHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecC----
Confidence            3344543 444443 33 3457899999999999999999999999999999999988752      345555543    


Q ss_pred             hhhhhccCCCCceeeEEEccccccCC---hhHHHHHHHHhhcCCCeEEEEE
Q 037961           88 TELEQNVATQSSVDLVTIASALHWFD---LPQFYKQVKWVLKKPSGVIAAW  135 (262)
Q Consensus        88 ~~~~~~~~~~~~~D~V~~~~~~~~~d---~~~~l~~~~r~Lk~pgG~l~i~  135 (262)
                        +.+.++ +++||+|+++.++||++   ...+++++.++|| |||.+++.
T Consensus        87 --~~~~~~-~~~fD~I~~~~~~~~~~~~~~~~~l~~i~~~Lk-pgG~~~~~  133 (197)
T PRK11207         87 --LNNLTF-DGEYDFILSTVVLMFLEAKTIPGLIANMQRCTK-PGGYNLIV  133 (197)
T ss_pred             --hhhCCc-CCCcCEEEEecchhhCCHHHHHHHHHHHHHHcC-CCcEEEEE
Confidence              444444 45799999999999984   4579999999999 99997653

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=99.69  E-value=1.7e-16  Score=117.06  Aligned_cols=96  Identities=23%  Similarity=0.344  Sum_probs=78.1

Q ss_pred             CCCeEEEEcCcccHhHHHHHh--hCCeEEEEcCCHHHHHHHhcC-------CCceEEeCCCCchhhhhhccCCCCceeeE
Q 037961           33 KRNLAWDVGTRSGQAAASLAQ--IYQHVIATDTSPKQLKFAIKL-------PNIRYQLTPTMSITELEQNVATQSSVDLV  103 (262)
Q Consensus        33 ~~~~vlDvGcG~G~~~~~l~~--~~~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~D~V  103 (262)
                      |+.+|||+|||+|.++..+++  .+.+|+|+|+|+.|++.++++       +++++..++      +....-..+.||+|
T Consensus         1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d------~~~~~~~~~~~D~v   74 (112)
T PF12847_consen    1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGD------AEFDPDFLEPFDLV   74 (112)
T ss_dssp             TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESC------CHGGTTTSSCEEEE
T ss_pred             CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECc------cccCcccCCCCCEE
Confidence            467899999999999999999  689999999999999998752       688888876      31111234569999


Q ss_pred             EEcc-ccccC-C---hhHHHHHHHHhhcCCCeEEEEE
Q 037961          104 TIAS-ALHWF-D---LPQFYKQVKWVLKKPSGVIAAW  135 (262)
Q Consensus       104 ~~~~-~~~~~-d---~~~~l~~~~r~Lk~pgG~l~i~  135 (262)
                      ++.. +++++ +   ..++++++.+.|+ |||+|++-
T Consensus        75 ~~~~~~~~~~~~~~~~~~~l~~~~~~L~-pgG~lvi~  110 (112)
T PF12847_consen   75 ICSGFTLHFLLPLDERRRVLERIRRLLK-PGGRLVIN  110 (112)
T ss_dssp             EECSGSGGGCCHHHHHHHHHHHHHHHEE-EEEEEEEE
T ss_pred             EECCCccccccchhHHHHHHHHHHHhcC-CCcEEEEE
Confidence            9999 66644 3   4669999999999 99999983

...

>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional

Probab=99.69  E-value=1.6e-15  Score=129.31  Aligned_cols=189  Identities=16%  Similarity=0.212  Sum_probs=117.2

Q ss_pred             HHHHHHHhhCC-CCCeEEEEcCcccHhHHHHHhhC-----CeEEEEcCCHHHHHHHhcC-CCceEEeCCCCchhhhhhcc
Q 037961           22 ELFKLIASKTP-KRNLAWDVGTRSGQAAASLAQIY-----QHVIATDTSPKQLKFAIKL-PNIRYQLTPTMSITELEQNV   94 (262)
Q Consensus        22 ~~~~~l~~~~~-~~~~vlDvGcG~G~~~~~l~~~~-----~~v~~vD~s~~~~~~a~~~-~~~~~~~~~~~~~~~~~~~~   94 (262)
                      .+...+....+ +..+|||+|||+|.++..++...     .+++|+|+|+.|++.|++. +++.+.+++      +.++|
T Consensus        73 ~i~~~l~~~l~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d------~~~lp  146 (272)
T PRK11088         73 AVANLLAERLDEKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVAS------SHRLP  146 (272)
T ss_pred             HHHHHHHHhcCCCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEEee------cccCC
Confidence            33344544444 44779999999999999988652     3789999999999998754 778887754      66678


Q ss_pred             CCCCceeeEEEccccccCChhHHHHHHHHhhcCCCeEEEEEecCCCcccHHHHHhhcccccCCCCCCccccchhHHhcCC
Q 037961           95 ATQSSVDLVTIASALHWFDLPQFYKQVKWVLKKPSGVIAAWTYTMPEINESVGAVFKPFDTIDCNPFWAPQRKLVDKKYM  174 (262)
Q Consensus        95 ~~~~~~D~V~~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (262)
                      +++++||+|++..+      ...++++.|+|| |||.|++.......+ .++++..   +. .  +.......   ... 
T Consensus       147 ~~~~sfD~I~~~~~------~~~~~e~~rvLk-pgG~li~~~p~~~~l-~el~~~~---~~-~--~~~~~~~~---~~~-  208 (272)
T PRK11088        147 FADQSLDAIIRIYA------PCKAEELARVVK-PGGIVITVTPGPRHL-FELKGLI---YD-E--VRLHAPEA---EQL-  208 (272)
T ss_pred             CcCCceeEEEEecC------CCCHHHHHhhcc-CCCEEEEEeCCCcch-HHHHHHh---cc-c--ccccccch---hhc-
Confidence            88999999998654      235689999999 999999876554332 2333322   11 0  00000000   000 


Q ss_pred             CCCCCCCCCCCCCCCCCCcceeEeEeecHHHHHHHHhhhhHHHHHHHhCCccchHHHHHHHHHHhccCCCCeEEEEEeEE
Q 037961          175 SIDFPFEPVDGYENTGPFDQFVVEKMMDLDDYFKFIRSCSAYQKAKDKGVELLTENVMEKFKAAWNEDGQSQKIARFRVY  254 (262)
Q Consensus       175 ~~~~~f~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~  254 (262)
                       .+  |+.++.       ..+.....++-++.+.++..++.+....++        -++.+.+.    ....+++.|.+.
T Consensus       209 -~g--F~~~~~-------~~~~~~~~l~~~~~~~ll~mtP~~~~~~~e--------~~~~~~~~----~~~~~~~~~~i~  266 (272)
T PRK11088        209 -EG--FELQHS-------ERLAYPMRLTGSEAVALLQMTPFAWKATPE--------VKQQLAAK----GVFSCETDFNIR  266 (272)
T ss_pred             -cC--CCeeeE-------EEEEEEEEeCHHHHHHHHcCCccccCCCHH--------HHHHHHcC----CCceEEEEEEEE
Confidence             12  332321       144555666667788888877766554444        23334321    112467777666


Q ss_pred             EE
Q 037961          255 LR  256 (262)
Q Consensus       255 ~~  256 (262)
                      ++
T Consensus       267 ~~  268 (272)
T PRK11088        267 VY  268 (272)
T ss_pred             EE
Confidence            53

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A

Probab=99.69  E-value=1.7e-16  Score=123.76  Aligned_cols=98  Identities=24%  Similarity=0.375  Sum_probs=82.8

Q ss_pred             CCCeEEEEcCcccHhHHHHHhh---CCeEEEEcCCHHHHHHHhc------CCCceEEeCCCCchhhhhhcc--CCCCcee
Q 037961           33 KRNLAWDVGTRSGQAAASLAQI---YQHVIATDTSPKQLKFAIK------LPNIRYQLTPTMSITELEQNV--ATQSSVD  101 (262)
Q Consensus        33 ~~~~vlDvGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~------~~~~~~~~~~~~~~~~~~~~~--~~~~~~D  101 (262)
                      ++.+|||+|||+|.++..+++.   +.+++|+|+|+.|++.|++      .+++++.+++      +.+++  ++ ++||
T Consensus         3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d------~~~l~~~~~-~~~D   75 (152)
T PF13847_consen    3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGD------IEDLPQELE-EKFD   75 (152)
T ss_dssp             TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESB------TTCGCGCSS-TTEE
T ss_pred             CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEee------hhccccccC-CCee
Confidence            5678999999999999999953   6799999999999999986      2578898876      33333  44 7899


Q ss_pred             eEEEccccccC-ChhHHHHHHHHhhcCCCeEEEEEecC
Q 037961          102 LVTIASALHWF-DLPQFYKQVKWVLKKPSGVIAAWTYT  138 (262)
Q Consensus       102 ~V~~~~~~~~~-d~~~~l~~~~r~Lk~pgG~l~i~~~~  138 (262)
                      +|++..++||+ ++..+++++.++|+ +||.+++....
T Consensus        76 ~I~~~~~l~~~~~~~~~l~~~~~~lk-~~G~~i~~~~~  112 (152)
T PF13847_consen   76 IIISNGVLHHFPDPEKVLKNIIRLLK-PGGILIISDPN  112 (152)
T ss_dssp             EEEEESTGGGTSHHHHHHHHHHHHEE-EEEEEEEEEEE
T ss_pred             EEEEcCchhhccCHHHHHHHHHHHcC-CCcEEEEEECC
Confidence            99999999999 88899999999999 99999985544

...

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.68  E-value=7.9e-16  Score=141.21  Aligned_cols=99  Identities=20%  Similarity=0.322  Sum_probs=84.4

Q ss_pred             CCCCeEEEEcCcccHhHHHHHhh-CCeEEEEcCCHHHHHHHhcC-----CCceEEeCCCCchhhhhhccCCCCceeeEEE
Q 037961           32 PKRNLAWDVGTRSGQAAASLAQI-YQHVIATDTSPKQLKFAIKL-----PNIRYQLTPTMSITELEQNVATQSSVDLVTI  105 (262)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~  105 (262)
                      +++.+|||+|||+|..+..++.. +.+|+|+|+|+.|++.|+++     .++.+..+|      +...++++++||+|++
T Consensus       265 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d------~~~~~~~~~~fD~I~s  338 (475)
T PLN02336        265 KPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIGRKCSVEFEVAD------CTKKTYPDNSFDVIYS  338 (475)
T ss_pred             CCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcC------cccCCCCCCCEEEEEE
Confidence            46778999999999999998875 67999999999999998753     356666654      5556667789999999


Q ss_pred             ccccccC-ChhHHHHHHHHhhcCCCeEEEEEec
Q 037961          106 ASALHWF-DLPQFYKQVKWVLKKPSGVIAAWTY  137 (262)
Q Consensus       106 ~~~~~~~-d~~~~l~~~~r~Lk~pgG~l~i~~~  137 (262)
                      ..+++|+ |+..++++++|+|| |||.|++..+
T Consensus       339 ~~~l~h~~d~~~~l~~~~r~Lk-pgG~l~i~~~  370 (475)
T PLN02336        339 RDTILHIQDKPALFRSFFKWLK-PGGKVLISDY  370 (475)
T ss_pred             CCcccccCCHHHHHHHHHHHcC-CCeEEEEEEe
Confidence            9999999 99999999999999 9999998544

>KOG4300 consensus Predicted methyltransferase [General function prediction only]

Probab=99.68  E-value=4.8e-16  Score=122.65  Aligned_cols=128  Identities=20%  Similarity=0.190  Sum_probs=96.5

Q ss_pred             ChHHHHHHHHhhCCC--CCeEEEEcCcccHhHHHHH-hhCCeEEEEcCCHHHHHHHhc------CCCce-EEeCCCCchh
Q 037961           19 YPKELFKLIASKTPK--RNLAWDVGTRSGQAAASLA-QIYQHVIATDTSPKQLKFAIK------LPNIR-YQLTPTMSIT   88 (262)
Q Consensus        19 yp~~~~~~l~~~~~~--~~~vlDvGcG~G~~~~~l~-~~~~~v~~vD~s~~~~~~a~~------~~~~~-~~~~~~~~~~   88 (262)
                      |..++++-+.....+  ...|||||||||..-...- ..+.+|+++|+++.|-+.+.+      ..++. ++++      
T Consensus        60 ykrelFs~i~~~~gk~~K~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva------  133 (252)
T KOG4300|consen   60 YKRELFSGIYYFLGKSGKGDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVA------  133 (252)
T ss_pred             HHHHHHhhhHHHhcccCccceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEee------
Confidence            345666665544432  2346999999998766553 358899999999999998864      25666 5554      


Q ss_pred             hhhhcc-CCCCceeeEEEccccccC-ChhHHHHHHHHhhcCCCeEEEEEecCCCcccHHHHHhhcccc
Q 037961           89 ELEQNV-ATQSSVDLVTIASALHWF-DLPQFYKQVKWVLKKPSGVIAAWTYTMPEINESVGAVFKPFD  154 (262)
Q Consensus        89 ~~~~~~-~~~~~~D~V~~~~~~~~~-d~~~~l~~~~r~Lk~pgG~l~i~~~~~~~~~~~~~~~~~~~~  154 (262)
                      +.++++ ++++++|.|++..++--. |+.+.++++.|+|| |||+++++.+..... .-+..+++...
T Consensus       134 ~ge~l~~l~d~s~DtVV~TlvLCSve~~~k~L~e~~rlLR-pgG~iifiEHva~~y-~~~n~i~q~v~  199 (252)
T KOG4300|consen  134 DGENLPQLADGSYDTVVCTLVLCSVEDPVKQLNEVRRLLR-PGGRIIFIEHVAGEY-GFWNRILQQVA  199 (252)
T ss_pred             chhcCcccccCCeeeEEEEEEEeccCCHHHHHHHHHHhcC-CCcEEEEEecccccc-hHHHHHHHHHh
Confidence            577777 789999999999999988 99999999999999 999999988765442 34445555443

>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.66  E-value=2.5e-17  Score=119.03  Aligned_cols=90  Identities=24%  Similarity=0.353  Sum_probs=58.5

Q ss_pred             EEEcCcccHhHHHHHhh--CCeEEEEcCCHHHHHHHhcC------CCceEEeCCCCchhhhhhccCCCCceeeEEEcccc
Q 037961           38 WDVGTRSGQAAASLAQI--YQHVIATDTSPKQLKFAIKL------PNIRYQLTPTMSITELEQNVATQSSVDLVTIASAL  109 (262)
Q Consensus        38 lDvGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~  109 (262)
                      ||+|||+|.++..+++.  ..+++|+|+|+.|++.++++      .+........   .+.... ...++||+|++..++
T Consensus         1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~---~~~~~~-~~~~~fD~V~~~~vl   76 (99)
T PF08242_consen    1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDV---LDLFDY-DPPESFDLVVASNVL   76 (99)
T ss_dssp             -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--S---SS---C-CC----SEEEEE-TT
T ss_pred             CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeec---CChhhc-ccccccceehhhhhH
Confidence            79999999999999998  77999999999999877753      2222332221   111111 123699999999999


Q ss_pred             ccC-ChhHHHHHHHHhhcCCCeEE
Q 037961          110 HWF-DLPQFYKQVKWVLKKPSGVI  132 (262)
Q Consensus       110 ~~~-d~~~~l~~~~r~Lk~pgG~l  132 (262)
                      ||+ ++..+++.+.++|+ |||.|
T Consensus        77 ~~l~~~~~~l~~~~~~L~-pgG~l   99 (99)
T PF08242_consen   77 HHLEDIEAVLRNIYRLLK-PGGIL   99 (99)
T ss_dssp             S--S-HHHHHHHHTTT-T-SS-EE
T ss_pred             hhhhhHHHHHHHHHHHcC-CCCCC
Confidence            999 99999999999999 99986

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.

>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]

Probab=99.66  E-value=2e-16  Score=129.39  Aligned_cols=100  Identities=25%  Similarity=0.289  Sum_probs=80.6

Q ss_pred             CCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhcC--------CCceEEeCCCCchhhhhhccCCCCceeeEEE
Q 037961           34 RNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKL--------PNIRYQLTPTMSITELEQNVATQSSVDLVTI  105 (262)
Q Consensus        34 ~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~  105 (262)
                      ++.|||+|||+|.++.+|++.|++|+|+|+++.|++.|++.        .++.+...  +...+++..   .+.||.|+|
T Consensus        90 g~~ilDvGCGgGLLSepLArlga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~--~~~~~~E~~---~~~fDaVvc  164 (282)
T KOG1270|consen   90 GMKILDVGCGGGLLSEPLARLGAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLE--YEDTDVEGL---TGKFDAVVC  164 (282)
T ss_pred             CceEEEeccCccccchhhHhhCCeeEeecccHHHHHHHHHhhhcCchhccccceeee--hhhcchhhc---ccccceeee
Confidence            47799999999999999999999999999999999999864        12222211  111234443   345999999


Q ss_pred             ccccccC-ChhHHHHHHHHhhcCCCeEEEEEecCC
Q 037961          106 ASALHWF-DLPQFYKQVKWVLKKPSGVIAAWTYTM  139 (262)
Q Consensus       106 ~~~~~~~-d~~~~l~~~~r~Lk~pgG~l~i~~~~~  139 (262)
                      ..+++|+ |++.++..+.++|| |||.+++.+...
T Consensus       165 sevleHV~dp~~~l~~l~~~lk-P~G~lfittinr  198 (282)
T KOG1270|consen  165 SEVLEHVKDPQEFLNCLSALLK-PNGRLFITTINR  198 (282)
T ss_pred             HHHHHHHhCHHHHHHHHHHHhC-CCCceEeeehhh
Confidence            9999999 99999999999999 999999966653

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=99.66  E-value=7.9e-16  Score=133.78  Aligned_cols=124  Identities=18%  Similarity=0.158  Sum_probs=96.9

Q ss_pred             HHHHHHHHh-hCCC-ChHHHHHHHHhhC---CCCCeEEEEcCcccHhHHHHHhh--CCeEEEEcCCHHHHHHHhcC---C
Q 037961            6 IKQANLYAV-ARPN-YPKELFKLIASKT---PKRNLAWDVGTRSGQAAASLAQI--YQHVIATDTSPKQLKFAIKL---P   75 (262)
Q Consensus         6 ~~~a~~Y~~-~rp~-yp~~~~~~l~~~~---~~~~~vlDvGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~---~   75 (262)
                      +..|..|+. .+|. +.+.+.+.+.+..   .++.+|||+|||+|..+..+++.  +.+|+++|+|+.|++.|++.   .
T Consensus        81 ~~lA~~YD~~~~~~~~~e~~r~~~l~~~~l~~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~~  160 (340)
T PLN02490         81 RFLSIVYDHIINPGHWTEDMRDDALEPADLSDRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLK  160 (340)
T ss_pred             cceeeecCCCeecCcchHHHHHHHHhhcccCCCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhcc
Confidence            344666665 2233 3345555555433   35679999999999999988875  46899999999999999864   4


Q ss_pred             CceEEeCCCCchhhhhhccCCCCceeeEEEccccccC-ChhHHHHHHHHhhcCCCeEEEEEe
Q 037961           76 NIRYQLTPTMSITELEQNVATQSSVDLVTIASALHWF-DLPQFYKQVKWVLKKPSGVIAAWT  136 (262)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~~~~-d~~~~l~~~~r~Lk~pgG~l~i~~  136 (262)
                      +++++.+      |++++++++++||+|+++.++|++ |++.+++++.++|| |||++++..
T Consensus       161 ~i~~i~g------D~e~lp~~~~sFDvVIs~~~L~~~~d~~~~L~e~~rvLk-PGG~LvIi~  215 (340)
T PLN02490        161 ECKIIEG------DAEDLPFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLK-IGGKACLIG  215 (340)
T ss_pred             CCeEEec------cHHhCCCCCCceeEEEEcChhhhCCCHHHHHHHHHHhcC-CCcEEEEEE
Confidence            6666654      577778888999999999999988 99999999999999 999998754

>TIGR00477 tehB tellurite resistance protein TehB

Probab=99.66  E-value=8.1e-16  Score=124.80  Aligned_cols=95  Identities=15%  Similarity=0.245  Sum_probs=75.8

Q ss_pred             CCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhcC---CC--ceEEeCCCCchhhhhhccCCCCceeeEEEcc
Q 037961           33 KRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKL---PN--IRYQLTPTMSITELEQNVATQSSVDLVTIAS  107 (262)
Q Consensus        33 ~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~---~~--~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~  107 (262)
                      ++.+|||+|||+|..+..+++++.+|+|+|+|+.|++.+++.   .+  +.+...      ++...++ +++||+|+++.
T Consensus        30 ~~~~vLDiGcG~G~~a~~la~~g~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~------d~~~~~~-~~~fD~I~~~~  102 (195)
T TIGR00477        30 APCKTLDLGCGQGRNSLYLSLAGYDVRAWDHNPASIASVLDMKARENLPLRTDAY------DINAAAL-NEDYDFIFSTV  102 (195)
T ss_pred             CCCcEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHhCCCceeEec------cchhccc-cCCCCEEEEec
Confidence            456899999999999999999999999999999999987642   22  334333      3333443 35799999999


Q ss_pred             ccccCC---hhHHHHHHHHhhcCCCeEEEEE
Q 037961          108 ALHWFD---LPQFYKQVKWVLKKPSGVIAAW  135 (262)
Q Consensus       108 ~~~~~d---~~~~l~~~~r~Lk~pgG~l~i~  135 (262)
                      ++|+++   ...+++++.++|+ |||.+++.
T Consensus       103 ~~~~~~~~~~~~~l~~~~~~Lk-pgG~lli~  132 (195)
T TIGR00477       103 VFMFLQAGRVPEIIANMQAHTR-PGGYNLIV  132 (195)
T ss_pred             ccccCCHHHHHHHHHHHHHHhC-CCcEEEEE
Confidence            999984   3569999999999 99996653

Part of a tellurite-reducing operon tehA and tehB

>TIGR00740 methyltransferase, putative

Probab=99.65  E-value=1.2e-15  Score=127.78  Aligned_cols=124  Identities=16%  Similarity=0.234  Sum_probs=92.6

Q ss_pred             hhH-HHHHHHHhh----CCCChHHHHHHH---Hh-hCCCCCeEEEEcCcccHhHHHHHhh----CCeEEEEcCCHHHHHH
Q 037961            4 LFI-KQANLYAVA----RPNYPKELFKLI---AS-KTPKRNLAWDVGTRSGQAAASLAQI----YQHVIATDTSPKQLKF   70 (262)
Q Consensus         4 ~F~-~~a~~Y~~~----rp~yp~~~~~~l---~~-~~~~~~~vlDvGcG~G~~~~~l~~~----~~~v~~vD~s~~~~~~   70 (262)
                      .|+ ..|+.|+..    .|.|. ++.+.+   .. ..+++.+|||+|||+|..+..+++.    +.+++|+|+|+.|++.
T Consensus        16 ~~~~~~a~~y~~~~~~~~p~y~-~~~~~~~~l~~~~~~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~   94 (239)
T TIGR00740        16 IFDENVAEVFPDMIQRSVPGYS-NIITAIGMLAERFVTPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVER   94 (239)
T ss_pred             ccChHHHHhCcchhhccCCCHH-HHHHHHHHHHHHhCCCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHH
Confidence            355 357788764    26664 333333   22 2357788999999999999998874    5689999999999999


Q ss_pred             HhcC-------CCceEEeCCCCchhhhhhccCCCCceeeEEEccccccCC---hhHHHHHHHHhhcCCCeEEEEEec
Q 037961           71 AIKL-------PNIRYQLTPTMSITELEQNVATQSSVDLVTIASALHWFD---LPQFYKQVKWVLKKPSGVIAAWTY  137 (262)
Q Consensus        71 a~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~~~~d---~~~~l~~~~r~Lk~pgG~l~i~~~  137 (262)
                      |+++       .+++++.++      +..++++  .+|+|+++.++||+.   ...+++++.++|+ |||.|++...
T Consensus        95 a~~~~~~~~~~~~v~~~~~d------~~~~~~~--~~d~v~~~~~l~~~~~~~~~~~l~~i~~~Lk-pgG~l~i~d~  162 (239)
T TIGR00740        95 CRQHIAAYHSEIPVEILCND------IRHVEIK--NASMVILNFTLQFLPPEDRIALLTKIYEGLN-PNGVLVLSEK  162 (239)
T ss_pred             HHHHHHhcCCCCCeEEEECC------hhhCCCC--CCCEEeeecchhhCCHHHHHHHHHHHHHhcC-CCeEEEEeec
Confidence            8753       246777654      5555443  589999999999994   4669999999999 9999998543

A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.

>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional

Probab=99.65  E-value=1.5e-15  Score=132.17  Aligned_cols=103  Identities=20%  Similarity=0.067  Sum_probs=84.4

Q ss_pred             HHHHhhCC--CCCeEEEEcCcccHhHHHHHhhCC-eEEEEcCCHHHHHHHhc-------CCCceEEeCCCCchhhhhhcc
Q 037961           25 KLIASKTP--KRNLAWDVGTRSGQAAASLAQIYQ-HVIATDTSPKQLKFAIK-------LPNIRYQLTPTMSITELEQNV   94 (262)
Q Consensus        25 ~~l~~~~~--~~~~vlDvGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~-------~~~~~~~~~~~~~~~~~~~~~   94 (262)
                      +.+..+++  ++.+|||||||+|.++..++..+. .|+|+|+|+.|+.+++.       ..++.++.+      ++++++
T Consensus       112 ~~l~~~l~~l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~------d~e~lp  185 (322)
T PRK15068        112 DRVLPHLSPLKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPL------GIEQLP  185 (322)
T ss_pred             HHHHHhhCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeC------CHHHCC
Confidence            34444543  568999999999999999998875 59999999999875432       235777765      467777


Q ss_pred             CCCCceeeEEEccccccC-ChhHHHHHHHHhhcCCCeEEEEE
Q 037961           95 ATQSSVDLVTIASALHWF-DLPQFYKQVKWVLKKPSGVIAAW  135 (262)
Q Consensus        95 ~~~~~~D~V~~~~~~~~~-d~~~~l~~~~r~Lk~pgG~l~i~  135 (262)
                      + +++||+|+|..++||. |+..++++++++|+ |||.|++-
T Consensus       186 ~-~~~FD~V~s~~vl~H~~dp~~~L~~l~~~Lk-pGG~lvl~  225 (322)
T PRK15068        186 A-LKAFDTVFSMGVLYHRRSPLDHLKQLKDQLV-PGGELVLE  225 (322)
T ss_pred             C-cCCcCEEEECChhhccCCHHHHHHHHHHhcC-CCcEEEEE
Confidence            6 7889999999999998 99999999999999 99999873

>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A

Probab=99.64  E-value=5.3e-16  Score=112.49  Aligned_cols=87  Identities=28%  Similarity=0.512  Sum_probs=70.5

Q ss_pred             EEEEcCcccHhHHHHHhhC-----CeEEEEcCCHHHHHHHhcC-----CCceEEeCCCCchhhhhhccCCCCceeeEEEc
Q 037961           37 AWDVGTRSGQAAASLAQIY-----QHVIATDTSPKQLKFAIKL-----PNIRYQLTPTMSITELEQNVATQSSVDLVTIA  106 (262)
Q Consensus        37 vlDvGcG~G~~~~~l~~~~-----~~v~~vD~s~~~~~~a~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~  106 (262)
                      |||+|||+|..+..+.+.+     .+++|+|+|+.|++.+++.     .++++.++|      +.+++..+++||+|++.
T Consensus         1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D------~~~l~~~~~~~D~v~~~   74 (101)
T PF13649_consen    1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQAD------ARDLPFSDGKFDLVVCS   74 (101)
T ss_dssp             -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESC------TTCHHHHSSSEEEEEE-
T ss_pred             CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECC------HhHCcccCCCeeEEEEc
Confidence            6999999999999999875     7999999999999998853     478888765      55566678899999995


Q ss_pred             -cccccCC---hhHHHHHHHHhhcCCCe
Q 037961          107 -SALHWFD---LPQFYKQVKWVLKKPSG  130 (262)
Q Consensus       107 -~~~~~~d---~~~~l~~~~r~Lk~pgG  130 (262)
                       .++|+++   ..++++++.++|| |||
T Consensus        75 ~~~~~~~~~~~~~~ll~~~~~~l~-pgG  101 (101)
T PF13649_consen   75 GLSLHHLSPEELEALLRRIARLLR-PGG  101 (101)
T ss_dssp             TTGGGGSSHHHHHHHHHHHHHTEE-EEE
T ss_pred             CCccCCCCHHHHHHHHHHHHHHhC-CCC
Confidence             5499895   3458999999999 998

>TIGR00452 methyltransferase, putative

Probab=99.62  E-value=4.8e-15  Score=127.90  Aligned_cols=103  Identities=18%  Similarity=0.022  Sum_probs=81.6

Q ss_pred             HHHhhC--CCCCeEEEEcCcccHhHHHHHhhCC-eEEEEcCCHHHHHHHhc-------CCCceEEeCCCCchhhhhhccC
Q 037961           26 LIASKT--PKRNLAWDVGTRSGQAAASLAQIYQ-HVIATDTSPKQLKFAIK-------LPNIRYQLTPTMSITELEQNVA   95 (262)
Q Consensus        26 ~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~-------~~~~~~~~~~~~~~~~~~~~~~   95 (262)
                      .+..++  .++.+|||+|||+|.++..++..++ .|+|+|+|+.|+.+++.       ..++.+...      ++++++.
T Consensus       112 ~~l~~l~~~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~------~ie~lp~  185 (314)
T TIGR00452       112 RVLPHLSPLKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPL------GIEQLHE  185 (314)
T ss_pred             HHHHhcCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEEC------CHHHCCC
Confidence            344443  3568999999999999999988876 69999999999876431       134555544      3566654


Q ss_pred             CCCceeeEEEccccccC-ChhHHHHHHHHhhcCCCeEEEEEe
Q 037961           96 TQSSVDLVTIASALHWF-DLPQFYKQVKWVLKKPSGVIAAWT  136 (262)
Q Consensus        96 ~~~~~D~V~~~~~~~~~-d~~~~l~~~~r~Lk~pgG~l~i~~  136 (262)
                       ..+||+|+|+.+++|. ++..++++++++|| |||.|++.+
T Consensus       186 -~~~FD~V~s~gvL~H~~dp~~~L~el~r~Lk-pGG~Lvlet  225 (314)
T TIGR00452       186 -LYAFDTVFSMGVLYHRKSPLEHLKQLKHQLV-IKGELVLET  225 (314)
T ss_pred             -CCCcCEEEEcchhhccCCHHHHHHHHHHhcC-CCCEEEEEE
Confidence             3589999999999999 99999999999999 999999843

Known examples to date are restricted to the proteobacteria.

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=99.62  E-value=1.2e-14  Score=121.34  Aligned_cols=129  Identities=22%  Similarity=0.236  Sum_probs=98.5

Q ss_pred             hhhHHHHHHHHhhC--C--CChHHHHHHHHhhC--CCCCeEEEEcCcccHhHHHHHhhC---CeEEEEcCCHHHHHHHhc
Q 037961            3 ELFIKQANLYAVAR--P--NYPKELFKLIASKT--PKRNLAWDVGTRSGQAAASLAQIY---QHVIATDTSPKQLKFAIK   73 (262)
Q Consensus         3 ~~F~~~a~~Y~~~r--p--~yp~~~~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~   73 (262)
                      ..|+..++.|++..  .  .+.......+....  .++.+|||+|||+|..+..+++.+   .+++++|+++.+++.+++
T Consensus        15 ~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~   94 (239)
T PRK00216         15 EMFDSIAPKYDLMNDLLSFGLHRVWRRKTIKWLGVRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGRE   94 (239)
T ss_pred             HHHHHhhhhHHHHHHHHhcCCcHHHHHHHHHHhCCCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHH
Confidence            57888999997531  1  22333333333332  356789999999999999998875   799999999999999886


Q ss_pred             C-------CCceEEeCCCCchhhhhhccCCCCceeeEEEccccccC-ChhHHHHHHHHhhcCCCeEEEEEecC
Q 037961           74 L-------PNIRYQLTPTMSITELEQNVATQSSVDLVTIASALHWF-DLPQFYKQVKWVLKKPSGVIAAWTYT  138 (262)
Q Consensus        74 ~-------~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~~~~-d~~~~l~~~~r~Lk~pgG~l~i~~~~  138 (262)
                      .       .++.+..++      +...+.+.++||+|+++.++|++ ++..+++++.++|+ |||.+++....
T Consensus        95 ~~~~~~~~~~~~~~~~d------~~~~~~~~~~~D~I~~~~~l~~~~~~~~~l~~~~~~L~-~gG~li~~~~~  160 (239)
T PRK00216         95 KLRDLGLSGNVEFVQGD------AEALPFPDNSFDAVTIAFGLRNVPDIDKALREMYRVLK-PGGRLVILEFS  160 (239)
T ss_pred             hhcccccccCeEEEecc------cccCCCCCCCccEEEEecccccCCCHHHHHHHHHHhcc-CCcEEEEEEec
Confidence            4       345565544      44455567889999999999999 99999999999999 99999885543

>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase

Probab=99.62  E-value=8.6e-15  Score=119.42  Aligned_cols=102  Identities=21%  Similarity=0.279  Sum_probs=80.4

Q ss_pred             HHHhhCCCCCeEEEEcCcccHhHHHHHhh--CCeEEEEcCCHHHHHHHhc-CCCceEEeCCCCchhhhhhccCCCCceee
Q 037961           26 LIASKTPKRNLAWDVGTRSGQAAASLAQI--YQHVIATDTSPKQLKFAIK-LPNIRYQLTPTMSITELEQNVATQSSVDL  102 (262)
Q Consensus        26 ~l~~~~~~~~~vlDvGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~  102 (262)
                      .++...++..+|||+|||+|..+..+++.  +.+++|+|+|+.|++.|++ .+++.+.+++      +.+ ++++++||+
T Consensus        36 ~~l~~~~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~~~~~~~~d------~~~-~~~~~sfD~  108 (204)
T TIGR03587        36 RALNRLPKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLPNINIIQGS------LFD-PFKDNFFDL  108 (204)
T ss_pred             HHHHhcCCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCCCCcEEEee------ccC-CCCCCCEEE
Confidence            33445567788999999999999999886  6799999999999999987 4677777654      444 667889999


Q ss_pred             EEEccccccCCh---hHHHHHHHHhhcCCCeEEEEEec
Q 037961          103 VTIASALHWFDL---PQFYKQVKWVLKKPSGVIAAWTY  137 (262)
Q Consensus       103 V~~~~~~~~~d~---~~~l~~~~r~Lk~pgG~l~i~~~  137 (262)
                      |+++.++||+++   .++++++.|+++   +.++++.+
T Consensus       109 V~~~~vL~hl~p~~~~~~l~el~r~~~---~~v~i~e~  143 (204)
T TIGR03587       109 VLTKGVLIHINPDNLPTAYRELYRCSN---RYILIAEY  143 (204)
T ss_pred             EEECChhhhCCHHHHHHHHHHHHhhcC---cEEEEEEe
Confidence            999999999864   447777777754   46666554

Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=99.61  E-value=5.7e-15  Score=125.98  Aligned_cols=99  Identities=25%  Similarity=0.313  Sum_probs=83.6

Q ss_pred             CCCCeEEEEcCcccHhHHHHHhh-C--CeEEEEcCCHHHHHHHhcC------CCceEEeCCCCchhhhhhccCCCCceee
Q 037961           32 PKRNLAWDVGTRSGQAAASLAQI-Y--QHVIATDTSPKQLKFAIKL------PNIRYQLTPTMSITELEQNVATQSSVDL  102 (262)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~-~--~~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~D~  102 (262)
                      +++.+|||+|||+|..+..++.. +  .+|+++|+++.|++.|+++      .++++..+      +++.+++++++||+
T Consensus        76 ~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~------d~~~l~~~~~~fD~  149 (272)
T PRK11873         76 KPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLG------EIEALPVADNSVDV  149 (272)
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEc------chhhCCCCCCceeE
Confidence            47789999999999988877664 3  3799999999999999863      45666654      46777777889999


Q ss_pred             EEEccccccC-ChhHHHHHHHHhhcCCCeEEEEEec
Q 037961          103 VTIASALHWF-DLPQFYKQVKWVLKKPSGVIAAWTY  137 (262)
Q Consensus       103 V~~~~~~~~~-d~~~~l~~~~r~Lk~pgG~l~i~~~  137 (262)
                      |+++.++|+. +..++++++.++|| |||+|++...
T Consensus       150 Vi~~~v~~~~~d~~~~l~~~~r~Lk-pGG~l~i~~~  184 (272)
T PRK11873        150 IISNCVINLSPDKERVFKEAFRVLK-PGGRFAISDV  184 (272)
T ss_pred             EEEcCcccCCCCHHHHHHHHHHHcC-CCcEEEEEEe
Confidence            9999999999 89999999999999 9999998543

>PRK06922 hypothetical protein; Provisional

Probab=99.60  E-value=3.1e-15  Score=137.85  Aligned_cols=97  Identities=21%  Similarity=0.152  Sum_probs=79.4

Q ss_pred             CCCeEEEEcCcccHhHHHHHhh--CCeEEEEcCCHHHHHHHhcC-----CCceEEeCCCCchhhhhhcc--CCCCceeeE
Q 037961           33 KRNLAWDVGTRSGQAAASLAQI--YQHVIATDTSPKQLKFAIKL-----PNIRYQLTPTMSITELEQNV--ATQSSVDLV  103 (262)
Q Consensus        33 ~~~~vlDvGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~-----~~~~~~~~~~~~~~~~~~~~--~~~~~~D~V  103 (262)
                      ++.+|||+|||+|..+..+++.  +.+++|+|+|+.|++.|++.     .++.++.++      +.+++  +++++||+|
T Consensus       418 ~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gD------a~dLp~~fedeSFDvV  491 (677)
T PRK06922        418 KGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGD------AINLSSSFEKESVDTI  491 (677)
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcc------hHhCccccCCCCEEEE
Confidence            5678999999999999988875  56999999999999998753     234555554      44555  678899999


Q ss_pred             EEccccccC--------------ChhHHHHHHHHhhcCCCeEEEEEe
Q 037961          104 TIASALHWF--------------DLPQFYKQVKWVLKKPSGVIAAWT  136 (262)
Q Consensus       104 ~~~~~~~~~--------------d~~~~l~~~~r~Lk~pgG~l~i~~  136 (262)
                      +++.++||+              +..+++++++++|| |||.+++..
T Consensus       492 Vsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLK-PGGrLII~D  537 (677)
T PRK06922        492 VYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLK-PGGRIIIRD  537 (677)
T ss_pred             EEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcC-CCcEEEEEe
Confidence            999999964              34679999999999 999999854

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=99.60  E-value=2.4e-14  Score=118.21  Aligned_cols=130  Identities=25%  Similarity=0.258  Sum_probs=100.6

Q ss_pred             hhhhHHHHHHHHhhCCCC----hHHHHHHHHhhC--CCCCeEEEEcCcccHhHHHHHhhCC---eEEEEcCCHHHHHHHh
Q 037961            2 AELFIKQANLYAVARPNY----PKELFKLIASKT--PKRNLAWDVGTRSGQAAASLAQIYQ---HVIATDTSPKQLKFAI   72 (262)
Q Consensus         2 ~~~F~~~a~~Y~~~rp~y----p~~~~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~   72 (262)
                      .+.|+..+..|+.....+    .......+....  .++.+|||+|||+|..+..+++.+.   +++++|+++.+++.++
T Consensus         2 ~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~   81 (223)
T TIGR01934         2 QEMFDRIAPKYDLLNDLLSFGLHRLWRRRAVKLIGVFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAK   81 (223)
T ss_pred             HhHHHHHHhhhhHHHHHHhcccHHHHHHHHHHHhccCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHH
Confidence            357899999999874322    122233333332  3678999999999999999988743   8999999999999887


Q ss_pred             cC----CCceEEeCCCCchhhhhhccCCCCceeeEEEccccccC-ChhHHHHHHHHhhcCCCeEEEEEecC
Q 037961           73 KL----PNIRYQLTPTMSITELEQNVATQSSVDLVTIASALHWF-DLPQFYKQVKWVLKKPSGVIAAWTYT  138 (262)
Q Consensus        73 ~~----~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~~~~-d~~~~l~~~~r~Lk~pgG~l~i~~~~  138 (262)
                      +.    .++.+..++      +.+.+++.++||+|+++.++|++ ++..+++++.++|+ |||++++....
T Consensus        82 ~~~~~~~~i~~~~~d------~~~~~~~~~~~D~i~~~~~~~~~~~~~~~l~~~~~~L~-~gG~l~~~~~~  145 (223)
T TIGR01934        82 KKSELPLNIEFIQAD------AEALPFEDNSFDAVTIAFGLRNVTDIQKALREMYRVLK-PGGRLVILEFS  145 (223)
T ss_pred             HHhccCCCceEEecc------hhcCCCCCCcEEEEEEeeeeCCcccHHHHHHHHHHHcC-CCcEEEEEEec
Confidence            53    356666654      45555667789999999999999 99999999999999 99999986654

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=99.59  E-value=5.1e-15  Score=120.76  Aligned_cols=99  Identities=20%  Similarity=0.222  Sum_probs=80.8

Q ss_pred             CCCeEEEEcCcccHhHHHHHhh--CCeEEEEcCCHHHHHHHhcC------CCceEEeCCCCchhhh-hhcc--CCCCcee
Q 037961           33 KRNLAWDVGTRSGQAAASLAQI--YQHVIATDTSPKQLKFAIKL------PNIRYQLTPTMSITEL-EQNV--ATQSSVD  101 (262)
Q Consensus        33 ~~~~vlDvGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~~-~~~~--~~~~~~D  101 (262)
                      +..+|||+|||+|..+..++..  +.+|+|+|+|+.|++.+++.      .++.+++++      + +.++  +++++||
T Consensus        40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d------~~~~l~~~~~~~~~D  113 (202)
T PRK00121         40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGD------AVEVLLDMFPDGSLD  113 (202)
T ss_pred             CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecC------HHHHHHHHcCccccc
Confidence            5678999999999999999876  45899999999999988752      567777765      4 4444  6678999


Q ss_pred             eEEEccccccCC---------hhHHHHHHHHhhcCCCeEEEEEecC
Q 037961          102 LVTIASALHWFD---------LPQFYKQVKWVLKKPSGVIAAWTYT  138 (262)
Q Consensus       102 ~V~~~~~~~~~d---------~~~~l~~~~r~Lk~pgG~l~i~~~~  138 (262)
                      +|+++.+.+|..         ...+++++.++|| |||.|++....
T Consensus       114 ~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~Lk-pgG~l~i~~~~  158 (202)
T PRK00121        114 RIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLK-PGGEIHFATDW  158 (202)
T ss_pred             eEEEECCCCCCCccccccccCCHHHHHHHHHHcC-CCCEEEEEcCC
Confidence            999988877752         4679999999999 99999985533

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=99.58  E-value=3.8e-14  Score=116.28  Aligned_cols=111  Identities=16%  Similarity=0.016  Sum_probs=82.8

Q ss_pred             hHHHHHHHHhhC--CCCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhcC------------------CCceE
Q 037961           20 PKELFKLIASKT--PKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKL------------------PNIRY   79 (262)
Q Consensus        20 p~~~~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~------------------~~~~~   79 (262)
                      |...+..+....  +++.+|||+|||.|..+..|+++|.+|+|+|+|+.+++.+.+.                  .++++
T Consensus        19 p~~~l~~~~~~l~~~~~~rvLd~GCG~G~da~~LA~~G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~   98 (213)
T TIGR03840        19 VNPLLVKHWPALGLPAGARVFVPLCGKSLDLAWLAEQGHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEI   98 (213)
T ss_pred             CCHHHHHHHHhhCCCCCCeEEEeCCCchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEE
Confidence            444444444443  5678999999999999999999999999999999999986321                  23555


Q ss_pred             EeCCCCchhhhhhccCC-CCceeeEEEccccccCChh---HHHHHHHHhhcCCCeEEEEEec
Q 037961           80 QLTPTMSITELEQNVAT-QSSVDLVTIASALHWFDLP---QFYKQVKWVLKKPSGVIAAWTY  137 (262)
Q Consensus        80 ~~~~~~~~~~~~~~~~~-~~~~D~V~~~~~~~~~d~~---~~l~~~~r~Lk~pgG~l~i~~~  137 (262)
                      .++|      +.++... .++||.|+-..++|+++++   ..++.+.++|| |||++++.++
T Consensus        99 ~~~D------~~~~~~~~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLk-pgG~~ll~~~  153 (213)
T TIGR03840        99 FCGD------FFALTAADLGPVDAVYDRAALIALPEEMRQRYAAHLLALLP-PGARQLLITL  153 (213)
T ss_pred             EEcc------CCCCCcccCCCcCEEEechhhccCCHHHHHHHHHHHHHHcC-CCCeEEEEEE
Confidence            5554      4333321 3579999998888888443   48999999999 9998776444

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=99.57  E-value=2.4e-14  Score=114.96  Aligned_cols=97  Identities=23%  Similarity=0.231  Sum_probs=78.4

Q ss_pred             hhCCCCCeEEEEcCcccHhHHHHHhh--CCeEEEEcCCHHHHHHHhcC------CCceEEeCCCCchhhhhhccCCCCce
Q 037961           29 SKTPKRNLAWDVGTRSGQAAASLAQI--YQHVIATDTSPKQLKFAIKL------PNIRYQLTPTMSITELEQNVATQSSV  100 (262)
Q Consensus        29 ~~~~~~~~vlDvGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (262)
                      ...+++.+|||+|||+|..+..++..  +.+|+++|+|+.|++.|++.      .++++..++      +++.+. +++|
T Consensus        41 ~~l~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d------~~~~~~-~~~f  113 (187)
T PRK00107         41 PYLPGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGR------AEEFGQ-EEKF  113 (187)
T ss_pred             hhcCCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEecc------HhhCCC-CCCc
Confidence            34456889999999999999988863  67999999999999988752      457777764      445544 6789


Q ss_pred             eeEEEccccccCChhHHHHHHHHhhcCCCeEEEEEe
Q 037961          101 DLVTIASALHWFDLPQFYKQVKWVLKKPSGVIAAWT  136 (262)
Q Consensus       101 D~V~~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~  136 (262)
                      |+|+++.   ..+.+.++++++++|| |||++++..
T Consensus       114 DlV~~~~---~~~~~~~l~~~~~~Lk-pGG~lv~~~  145 (187)
T PRK00107        114 DVVTSRA---VASLSDLVELCLPLLK-PGGRFLALK  145 (187)
T ss_pred             cEEEEcc---ccCHHHHHHHHHHhcC-CCeEEEEEe
Confidence            9999864   2378899999999999 999999854

>smart00138 MeTrc Methyltransferase, chemotaxis proteins

Probab=99.57  E-value=1.1e-14  Score=123.35  Aligned_cols=95  Identities=25%  Similarity=0.366  Sum_probs=74.4

Q ss_pred             CCCeEEEEcCcccH----hHHHHHhh-------CCeEEEEcCCHHHHHHHhcC---------------------------
Q 037961           33 KRNLAWDVGTRSGQ----AAASLAQI-------YQHVIATDTSPKQLKFAIKL---------------------------   74 (262)
Q Consensus        33 ~~~~vlDvGcG~G~----~~~~l~~~-------~~~v~~vD~s~~~~~~a~~~---------------------------   74 (262)
                      ++.+|||+|||||.    ++..+++.       ..+|+|+|+|+.|++.|++.                           
T Consensus        99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~  178 (264)
T smart00138       99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR  178 (264)
T ss_pred             CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence            45689999999996    45555543       35899999999999999863                           


Q ss_pred             ------CCceEEeCCCCchhhhhhccCCCCceeeEEEccccccCCh---hHHHHHHHHhhcCCCeEEEE
Q 037961           75 ------PNIRYQLTPTMSITELEQNVATQSSVDLVTIASALHWFDL---PQFYKQVKWVLKKPSGVIAA  134 (262)
Q Consensus        75 ------~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~~~~d~---~~~l~~~~r~Lk~pgG~l~i  134 (262)
                            .++.+.+.      |+.+.+++.++||+|+|.+++||++.   .++++++.++|+ |||.|++
T Consensus       179 v~~~ir~~V~F~~~------dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~-pGG~L~l  240 (264)
T smart00138      179 VKPELKERVRFAKH------NLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALK-PGGYLFL  240 (264)
T ss_pred             EChHHhCcCEEeec------cCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhC-CCeEEEE
Confidence                  13444443      45555556789999999999999953   359999999999 9999998

Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.

>PRK06202 hypothetical protein; Provisional

Probab=99.57  E-value=1.5e-14  Score=120.53  Aligned_cols=89  Identities=24%  Similarity=0.317  Sum_probs=71.0

Q ss_pred             CCCCeEEEEcCcccHhHHHHHhh----C--CeEEEEcCCHHHHHHHhcC---CCceEEeCCCCchhhhhhccCCCCceee
Q 037961           32 PKRNLAWDVGTRSGQAAASLAQI----Y--QHVIATDTSPKQLKFAIKL---PNIRYQLTPTMSITELEQNVATQSSVDL  102 (262)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~----~--~~v~~vD~s~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~D~  102 (262)
                      ++..+|||+|||+|.++..|+..    +  .+|+|+|+|+.|++.|++.   .++++...+      +..++.++++||+
T Consensus        59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~------~~~l~~~~~~fD~  132 (232)
T PRK06202         59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGVTFRQAV------SDELVAEGERFDV  132 (232)
T ss_pred             CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCCeEEEEe------cccccccCCCccE
Confidence            45678999999999999988752    3  4899999999999999864   455665543      3334446789999


Q ss_pred             EEEccccccC-Ch--hHHHHHHHHhhc
Q 037961          103 VTIASALHWF-DL--PQFYKQVKWVLK  126 (262)
Q Consensus       103 V~~~~~~~~~-d~--~~~l~~~~r~Lk  126 (262)
                      |+++.++||+ |.  ..+++++.|+++
T Consensus       133 V~~~~~lhh~~d~~~~~~l~~~~r~~~  159 (232)
T PRK06202        133 VTSNHFLHHLDDAEVVRLLADSAALAR  159 (232)
T ss_pred             EEECCeeecCChHHHHHHHHHHHHhcC
Confidence            9999999999 53  359999999987

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=99.57  E-value=3.5e-14  Score=122.02  Aligned_cols=105  Identities=22%  Similarity=0.297  Sum_probs=80.7

Q ss_pred             HHHHHHHHhhCCCCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhcC-----CCceEEeCCCCchhhhhhccC
Q 037961           21 KELFKLIASKTPKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKL-----PNIRYQLTPTMSITELEQNVA   95 (262)
Q Consensus        21 ~~~~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~-----~~~~~~~~~~~~~~~~~~~~~   95 (262)
                      .++...+ ... ++.+|||+|||+|..+..++..+.+|+|+|+|+.+++.+++.     .++.+...|      +....+
T Consensus       110 ~~~~~~~-~~~-~~~~vLDlGcG~G~~~~~la~~g~~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D------~~~~~~  181 (287)
T PRK12335        110 SEVLEAV-QTV-KPGKALDLGCGQGRNSLYLALLGFDVTAVDINQQSLENLQEIAEKENLNIRTGLYD------INSASI  181 (287)
T ss_pred             HHHHHHh-hcc-CCCCEEEeCCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCceEEEEec------hhcccc
Confidence            4445444 223 345899999999999999999999999999999999988753     245555443      333333


Q ss_pred             CCCceeeEEEccccccCC---hhHHHHHHHHhhcCCCeEEEEE
Q 037961           96 TQSSVDLVTIASALHWFD---LPQFYKQVKWVLKKPSGVIAAW  135 (262)
Q Consensus        96 ~~~~~D~V~~~~~~~~~d---~~~~l~~~~r~Lk~pgG~l~i~  135 (262)
                       +++||+|++..++|+++   ...+++++.++|+ |||.+++.
T Consensus       182 -~~~fD~I~~~~vl~~l~~~~~~~~l~~~~~~Lk-pgG~~l~v  222 (287)
T PRK12335        182 -QEEYDFILSTVVLMFLNRERIPAIIKNMQEHTN-PGGYNLIV  222 (287)
T ss_pred             -cCCccEEEEcchhhhCCHHHHHHHHHHHHHhcC-CCcEEEEE
Confidence             67899999999999985   4458999999999 99997663

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=99.56  E-value=3.2e-14  Score=116.57  Aligned_cols=106  Identities=16%  Similarity=0.088  Sum_probs=78.4

Q ss_pred             CCCCCeEEEEcCcccHhHHHHHhhC---CeEEEEcCCHHHHHHHhcCCCceEEeCCCCchhhhhh--ccCCCCceeeEEE
Q 037961           31 TPKRNLAWDVGTRSGQAAASLAQIY---QHVIATDTSPKQLKFAIKLPNIRYQLTPTMSITELEQ--NVATQSSVDLVTI  105 (262)
Q Consensus        31 ~~~~~~vlDvGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~D~V~~  105 (262)
                      .+++..|||+|||||.++..+++..   ..|+|+|+++ |    ...+++.++++|.......+.  -++.+++||+|++
T Consensus        49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~----~~~~~v~~i~~D~~~~~~~~~i~~~~~~~~~D~V~S  123 (209)
T PRK11188         49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-M----DPIVGVDFLQGDFRDELVLKALLERVGDSKVQVVMS  123 (209)
T ss_pred             CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-c----cCCCCcEEEecCCCChHHHHHHHHHhCCCCCCEEec
Confidence            4678899999999999999998863   5899999997 3    234678888887211110111  1245788999999


Q ss_pred             ccccccC-Ch-----------hHHHHHHHHhhcCCCeEEEEEecCCCcc
Q 037961          106 ASALHWF-DL-----------PQFYKQVKWVLKKPSGVIAAWTYTMPEI  142 (262)
Q Consensus       106 ~~~~~~~-d~-----------~~~l~~~~r~Lk~pgG~l~i~~~~~~~~  142 (262)
                      +.+.+|. ++           ..+++++.++|| |||.|++-.+....+
T Consensus       124 ~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~Lk-pGG~~vi~~~~~~~~  171 (209)
T PRK11188        124 DMAPNMSGTPAVDIPRAMYLVELALDMCRDVLA-PGGSFVVKVFQGEGF  171 (209)
T ss_pred             CCCCccCCChHHHHHHHHHHHHHHHHHHHHHcC-CCCEEEEEEecCcCH
Confidence            9888886 32           458999999999 999999855554443

>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins

Probab=99.54  E-value=2.4e-14  Score=113.42  Aligned_cols=98  Identities=21%  Similarity=0.319  Sum_probs=75.9

Q ss_pred             CCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhc----CCCceEEeCCCCchhhhhhccCCCCceeeEEEccc
Q 037961           33 KRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIK----LPNIRYQLTPTMSITELEQNVATQSSVDLVTIASA  108 (262)
Q Consensus        33 ~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~  108 (262)
                      ...++||+|||.|.+|..|++++.+++++|+|+..++.|++    .+++++.+.+      +.+. .+.++||+|+++..
T Consensus        43 ry~~alEvGCs~G~lT~~LA~rCd~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~d------vp~~-~P~~~FDLIV~SEV  115 (201)
T PF05401_consen   43 RYRRALEVGCSIGVLTERLAPRCDRLLAVDISPRALARARERLAGLPHVEWIQAD------VPEF-WPEGRFDLIVLSEV  115 (201)
T ss_dssp             SEEEEEEE--TTSHHHHHHGGGEEEEEEEES-HHHHHHHHHHTTT-SSEEEEES-------TTT----SS-EEEEEEES-
T ss_pred             ccceeEecCCCccHHHHHHHHhhCceEEEeCCHHHHHHHHHhcCCCCCeEEEECc------CCCC-CCCCCeeEEEEehH
Confidence            44789999999999999999999999999999999999985    3789999876      2222 36889999999999


Q ss_pred             cccC-Chh---HHHHHHHHhhcCCCeEEEEEecC
Q 037961          109 LHWF-DLP---QFYKQVKWVLKKPSGVIAAWTYT  138 (262)
Q Consensus       109 ~~~~-d~~---~~l~~~~r~Lk~pgG~l~i~~~~  138 (262)
                      +|++ +.+   .++..+...|+ |||.|++-+..
T Consensus       116 lYYL~~~~~L~~~l~~l~~~L~-pgG~LV~g~~r  148 (201)
T PF05401_consen  116 LYYLDDAEDLRAALDRLVAALA-PGGHLVFGHAR  148 (201)
T ss_dssp             GGGSSSHHHHHHHHHHHHHTEE-EEEEEEEEEE-
T ss_pred             hHcCCCHHHHHHHHHHHHHHhC-CCCEEEEEEec
Confidence            9999 433   37899999999 99999995543

The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=99.54  E-value=4.4e-14  Score=118.65  Aligned_cols=106  Identities=24%  Similarity=0.271  Sum_probs=85.8

Q ss_pred             HHHHHhhC--CCCCeEEEEcCcccHhHHHHHhh-CCeEEEEcCCHHHHHHHhcC-------CCceEEeCCCCchhhhhhc
Q 037961           24 FKLIASKT--PKRNLAWDVGTRSGQAAASLAQI-YQHVIATDTSPKQLKFAIKL-------PNIRYQLTPTMSITELEQN   93 (262)
Q Consensus        24 ~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~~~~~   93 (262)
                      ++.+.+++  .++++|||||||.|.+++.+++. +.+|+|+++|++|.+.+++.       .++++...|      -.+ 
T Consensus        61 ~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d------~rd-  133 (283)
T COG2230          61 LDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQD------YRD-  133 (283)
T ss_pred             HHHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEecc------ccc-
Confidence            55566654  59999999999999999999997 69999999999999998862       255555433      222 


Q ss_pred             cCCCCceeeEEEccccccC-C--hhHHHHHHHHhhcCCCeEEEEEecCC
Q 037961           94 VATQSSVDLVTIASALHWF-D--LPQFYKQVKWVLKKPSGVIAAWTYTM  139 (262)
Q Consensus        94 ~~~~~~~D~V~~~~~~~~~-d--~~~~l~~~~r~Lk~pgG~l~i~~~~~  139 (262)
                        ..+.||-|+|..+++++ .  .+.+++.+.++|+ |||.+++.+...
T Consensus       134 --~~e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~-~~G~~llh~I~~  179 (283)
T COG2230         134 --FEEPFDRIVSVGMFEHVGKENYDDFFKKVYALLK-PGGRMLLHSITG  179 (283)
T ss_pred             --cccccceeeehhhHHHhCcccHHHHHHHHHhhcC-CCceEEEEEecC
Confidence              34559999999999999 3  6779999999999 999999865543

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.54  E-value=3.8e-14  Score=130.09  Aligned_cols=98  Identities=20%  Similarity=0.210  Sum_probs=82.0

Q ss_pred             CCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhc----CCCceEEeCCCCchhhhhhccCCCCceeeEEEccc
Q 037961           33 KRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIK----LPNIRYQLTPTMSITELEQNVATQSSVDLVTIASA  108 (262)
Q Consensus        33 ~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~  108 (262)
                      ++.+|||+|||+|..+..+++.+.+|+|+|+++.|++.+++    .+++.+++++.    ....+++++++||+|++..+
T Consensus        37 ~~~~vLDlGcG~G~~~~~la~~~~~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~----~~~~~~~~~~~fD~I~~~~~  112 (475)
T PLN02336         37 EGKSVLELGAGIGRFTGELAKKAGQVIALDFIESVIKKNESINGHYKNVKFMCADV----TSPDLNISDGSVDLIFSNWL  112 (475)
T ss_pred             CCCEEEEeCCCcCHHHHHHHhhCCEEEEEeCCHHHHHHHHHHhccCCceEEEEecc----cccccCCCCCCEEEEehhhh
Confidence            45689999999999999999999999999999999998764    24677777651    11235667889999999999


Q ss_pred             cccC-C--hhHHHHHHHHhhcCCCeEEEEE
Q 037961          109 LHWF-D--LPQFYKQVKWVLKKPSGVIAAW  135 (262)
Q Consensus       109 ~~~~-d--~~~~l~~~~r~Lk~pgG~l~i~  135 (262)
                      +||+ +  ...+++++.++|| |||.+++.
T Consensus       113 l~~l~~~~~~~~l~~~~r~Lk-~gG~l~~~  141 (475)
T PLN02336        113 LMYLSDKEVENLAERMVKWLK-VGGYIFFR  141 (475)
T ss_pred             HHhCCHHHHHHHHHHHHHhcC-CCeEEEEE
Confidence            9999 4  4679999999999 99999883

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=99.54  E-value=7.3e-14  Score=111.86  Aligned_cols=114  Identities=18%  Similarity=0.246  Sum_probs=83.7

Q ss_pred             HHHhhCCCChHHHHHH-----HH--hhCCCCCeEEEEcCcccHhHHHHHhhC--CeEEEEcCCHHHHHHHhc------CC
Q 037961           11 LYAVARPNYPKELFKL-----IA--SKTPKRNLAWDVGTRSGQAAASLAQIY--QHVIATDTSPKQLKFAIK------LP   75 (262)
Q Consensus        11 ~Y~~~rp~yp~~~~~~-----l~--~~~~~~~~vlDvGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~------~~   75 (262)
                      .+.-.||.-|.++...     +.  ... ++.+|||+|||+|..+..++..+  .+|+|+|+|+.|++.+++      ..
T Consensus        14 ~~~l~~~~~~~~~~~~~~~d~i~~~~~~-~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~   92 (181)
T TIGR00138        14 RFNLTSLKTPEEIWERHILDSLKLLEYL-DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLN   92 (181)
T ss_pred             cccccccCCHHHHHHHHHHHHHHHHHhc-CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCC
Confidence            3444677766555222     21  222 47889999999999999987653  589999999999987764      24


Q ss_pred             CceEEeCCCCchhhhhhccCCCCceeeEEEccccccCChhHHHHHHHHhhcCCCeEEEEEe
Q 037961           76 NIRYQLTPTMSITELEQNVATQSSVDLVTIASALHWFDLPQFYKQVKWVLKKPSGVIAAWT  136 (262)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~  136 (262)
                      +++++.++      ++++. ..++||+|++.. +  .+.+.+++.+.++|+ |||.++++.
T Consensus        93 ~i~~i~~d------~~~~~-~~~~fD~I~s~~-~--~~~~~~~~~~~~~Lk-pgG~lvi~~  142 (181)
T TIGR00138        93 NVEIVNGR------AEDFQ-HEEQFDVITSRA-L--ASLNVLLELTLNLLK-VGGYFLAYK  142 (181)
T ss_pred             CeEEEecc------hhhcc-ccCCccEEEehh-h--hCHHHHHHHHHHhcC-CCCEEEEEc
Confidence            67777765      44443 357899999865 3  367778999999999 999999864

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases

Probab=99.53  E-value=1.1e-13  Score=109.77  Aligned_cols=111  Identities=23%  Similarity=0.291  Sum_probs=81.2

Q ss_pred             CCCeEEEEcCcccHhHHHHHhhCCe--EEEEcCCHHHHHHHhcC------CCceEEeCCCCchhhhhhccCCCCceeeEE
Q 037961           33 KRNLAWDVGTRSGQAAASLAQIYQH--VIATDTSPKQLKFAIKL------PNIRYQLTPTMSITELEQNVATQSSVDLVT  104 (262)
Q Consensus        33 ~~~~vlDvGcG~G~~~~~l~~~~~~--v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~  104 (262)
                      +..+|||+|||+|.++..++..+.+  |+++|+++.+++.++++      .++++...|.     .+.  +++++||+|+
T Consensus        31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~-----~~~--~~~~~fD~Iv  103 (170)
T PF05175_consen   31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDL-----FEA--LPDGKFDLIV  103 (170)
T ss_dssp             TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESST-----TTT--CCTTCEEEEE
T ss_pred             cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccccccccccc-----ccc--ccccceeEEE
Confidence            6678999999999999999998665  99999999999998752      3367777652     122  2478999999


Q ss_pred             EccccccCC------hhHHHHHHHHhhcCCCeEEEEEecCCCcccHHHHHhhc
Q 037961          105 IASALHWFD------LPQFYKQVKWVLKKPSGVIAAWTYTMPEINESVGAVFK  151 (262)
Q Consensus       105 ~~~~~~~~d------~~~~l~~~~r~Lk~pgG~l~i~~~~~~~~~~~~~~~~~  151 (262)
                      ++..+|.-.      ..++++++.+.|+ |||.|++...........+.+++.
T Consensus       104 ~NPP~~~~~~~~~~~~~~~i~~a~~~Lk-~~G~l~lv~~~~~~~~~~l~~~f~  155 (170)
T PF05175_consen  104 SNPPFHAGGDDGLDLLRDFIEQARRYLK-PGGRLFLVINSHLGYERLLKELFG  155 (170)
T ss_dssp             E---SBTTSHCHHHHHHHHHHHHHHHEE-EEEEEEEEEETTSCHHHHHHHHHS
T ss_pred             EccchhcccccchhhHHHHHHHHHHhcc-CCCEEEEEeecCCChHHHHHHhcC
Confidence            999988773      3568999999999 999998755444333333444443

; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....

>KOG2940 consensus Predicted methyltransferase [General function prediction only]

Probab=99.53  E-value=1.5e-13  Score=110.30  Aligned_cols=240  Identities=21%  Similarity=0.265  Sum_probs=143.4

Q ss_pred             hhHHHHHHHHhhCCC--------C-hHHHHHHHHhh----CCCCCeEEEEcCcccHhHHHHHhhC-CeEEEEcCCHHHHH
Q 037961            4 LFIKQANLYAVARPN--------Y-PKELFKLIASK----TPKRNLAWDVGTRSGQAAASLAQIY-QHVIATDTSPKQLK   69 (262)
Q Consensus         4 ~F~~~a~~Y~~~rp~--------y-p~~~~~~l~~~----~~~~~~vlDvGcG~G~~~~~l~~~~-~~v~~vD~s~~~~~   69 (262)
                      .|+++...-.+.|..        | .+++...++..    .+....++|+|||-|...+++...+ .+++-+|.|-.|++
T Consensus        30 iFDR~~KR~qrdrAa~~~d~k~dylkeeig~rlaDrvfD~kk~fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~  109 (325)
T KOG2940|consen   30 IFDRDLKRIQRDRAAWLSDQKNDYLKEEIGDRLADRVFDCKKSFPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIK  109 (325)
T ss_pred             hhhhHHHHHHHhHHhhcchhhhhHHHHHHHHHHHHHHHHHhhhCcceeecccchhhhhHHHHhcchhheeeeecchHHHH
Confidence            466666555554432        2 23333333333    3567789999999999999998875 57999999999999


Q ss_pred             HHhcC--CCceEEeCCCCchhhhhhccCCCCceeeEEEccccccC-ChhHHHHHHHHhhcCCCeEEEEEecCCCcccHH-
Q 037961           70 FAIKL--PNIRYQLTPTMSITELEQNVATQSSVDLVTIASALHWF-DLPQFYKQVKWVLKKPSGVIAAWTYTMPEINES-  145 (262)
Q Consensus        70 ~a~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~~~~-d~~~~l~~~~r~Lk~pgG~l~i~~~~~~~~~~~-  145 (262)
                      .++.-  +.+....-    .+|-+.+++.++++|+|+++.++||. |.+..+.+|...|| |+|.|+..-.+...+.+. 
T Consensus       110 s~~~~qdp~i~~~~~----v~DEE~Ldf~ens~DLiisSlslHW~NdLPg~m~~ck~~lK-PDg~FiasmlggdTLyELR  184 (325)
T KOG2940|consen  110 SCRDAQDPSIETSYF----VGDEEFLDFKENSVDLIISSLSLHWTNDLPGSMIQCKLALK-PDGLFIASMLGGDTLYELR  184 (325)
T ss_pred             HhhccCCCceEEEEE----ecchhcccccccchhhhhhhhhhhhhccCchHHHHHHHhcC-CCccchhHHhccccHHHHH
Confidence            99854  44443222    14567788899999999999999999 99999999999999 999998644443332111 


Q ss_pred             ----HHHhhcccccCCCCCCccc--cchhHHhcCCCCCCCCCCCCCCCCCCCCcceeEeEeecHHHHHHHHhhhhHHHHH
Q 037961          146 ----VGAVFKPFDTIDCNPFWAP--QRKLVDKKYMSIDFPFEPVDGYENTGPFDQFVVEKMMDLDDYFKFIRSCSAYQKA  219 (262)
Q Consensus       146 ----~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~f~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~~~~~  219 (262)
                          +.++ .+.  +...|...|  +.+-+-+.+...+|..-.++    ++   .+. ...-.+-+++.-|+...-....
T Consensus       185 ~slqLAel-ER~--GGiSphiSPf~qvrDiG~LL~rAGF~m~tvD----tD---Ei~-v~Yp~mfeLm~dLq~MgEsn~~  253 (325)
T KOG2940|consen  185 CSLQLAEL-ERE--GGISPHISPFTQVRDIGNLLTRAGFSMLTVD----TD---EIV-VGYPRMFELMEDLQGMGESNAA  253 (325)
T ss_pred             HHhhHHHH-Hhc--cCCCCCcChhhhhhhhhhHHhhcCcccceec----cc---cee-ecCchHHHHHHHHHhhcccchh
Confidence                1111 111  133444333  11223344555554322222    11   111 1111333344444433332222


Q ss_pred             HHh----CCccchHHHHHHHHHHhccCCCCeEEEEEeEEEEEEEeC
Q 037961          220 KDK----GVELLTENVMEKFKAAWNEDGQSQKIARFRVYLRIGKVG  261 (262)
Q Consensus       220 ~~~----~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~rk~  261 (262)
                      ...    +++.+.. -.+..++.+..++ +.++.+|.+++++|=|+
T Consensus       254 ~~Rn~~l~Ret~vA-aaAiY~smya~e~-~~iPATfqiiy~iGWk~  297 (325)
T KOG2940|consen  254 LNRNAILNRETMVA-AAAIYQSMYATED-GTIPATFQIIYMIGWKP  297 (325)
T ss_pred             hccCccccHHHHHH-HHHHHHHHhcCCC-CCcceeEEEEEEEccCc
Confidence            222    2333333 2344566666655 47999999999999875

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=99.53  E-value=9.7e-14  Score=117.87  Aligned_cols=101  Identities=20%  Similarity=0.308  Sum_probs=75.9

Q ss_pred             HHHHHhhC--CCCCeEEEEcCcccHhHHHHHhh-CCeEEEEcCCHHHHHHHhcC-------CCceEEeCCCCchhhhhhc
Q 037961           24 FKLIASKT--PKRNLAWDVGTRSGQAAASLAQI-YQHVIATDTSPKQLKFAIKL-------PNIRYQLTPTMSITELEQN   93 (262)
Q Consensus        24 ~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~~~~~   93 (262)
                      ++.+.+.+  +++.+|||||||.|.++..++++ |++|+|+.+|+++.+.+++.       ..+.+...|      ..++
T Consensus        51 ~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D------~~~~  124 (273)
T PF02353_consen   51 LDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQD------YRDL  124 (273)
T ss_dssp             HHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-------GGG-
T ss_pred             HHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEee------cccc
Confidence            55666664  58999999999999999999997 99999999999999998742       346666543      4443


Q ss_pred             cCCCCceeeEEEccccccC---ChhHHHHHHHHhhcCCCeEEEE
Q 037961           94 VATQSSVDLVTIASALHWF---DLPQFYKQVKWVLKKPSGVIAA  134 (262)
Q Consensus        94 ~~~~~~~D~V~~~~~~~~~---d~~~~l~~~~r~Lk~pgG~l~i  134 (262)
                      +   .+||.|++..++.++   +...+++++.++|| |||.+++
T Consensus       125 ~---~~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~Lk-pgG~~~l  164 (273)
T PF02353_consen  125 P---GKFDRIVSIEMFEHVGRKNYPAFFRKISRLLK-PGGRLVL  164 (273)
T ss_dssp             -----S-SEEEEESEGGGTCGGGHHHHHHHHHHHSE-TTEEEEE
T ss_pred             C---CCCCEEEEEechhhcChhHHHHHHHHHHHhcC-CCcEEEE
Confidence            2   389999999999999   34679999999999 9999997

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes

Probab=99.52  E-value=5.6e-14  Score=116.44  Aligned_cols=94  Identities=19%  Similarity=0.211  Sum_probs=77.8

Q ss_pred             eEEEEcCcccHhHHHHHhhC--CeEEEEcCCHHHHHHHhcC-------CCceEEeCCCCchhhhhhccCCCCceeeEEEc
Q 037961           36 LAWDVGTRSGQAAASLAQIY--QHVIATDTSPKQLKFAIKL-------PNIRYQLTPTMSITELEQNVATQSSVDLVTIA  106 (262)
Q Consensus        36 ~vlDvGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~  106 (262)
                      +|||+|||+|..+..+++.+  .+|+|+|+|+.+++.++++       .++++...|      +...++ .++||+|++.
T Consensus         2 ~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d------~~~~~~-~~~fD~I~~~   74 (224)
T smart00828        2 RVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRD------SAKDPF-PDTYDLVFGF   74 (224)
T ss_pred             eEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecc------cccCCC-CCCCCEeehH
Confidence            58999999999999998863  6899999999999988753       345666654      333333 3589999999


Q ss_pred             cccccC-ChhHHHHHHHHhhcCCCeEEEEEec
Q 037961          107 SALHWF-DLPQFYKQVKWVLKKPSGVIAAWTY  137 (262)
Q Consensus       107 ~~~~~~-d~~~~l~~~~r~Lk~pgG~l~i~~~  137 (262)
                      .++|++ ++..+++++.++|| |||.+++...
T Consensus        75 ~~l~~~~~~~~~l~~~~~~Lk-pgG~l~i~~~  105 (224)
T smart00828       75 EVIHHIKDKMDLFSNISRHLK-DGGHLVLADF  105 (224)
T ss_pred             HHHHhCCCHHHHHHHHHHHcC-CCCEEEEEEc
Confidence            999999 89999999999999 9999998543

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=99.50  E-value=1.7e-13  Score=121.99  Aligned_cols=105  Identities=20%  Similarity=0.241  Sum_probs=82.4

Q ss_pred             HHHHHhhC--CCCCeEEEEcCcccHhHHHHHhh-CCeEEEEcCCHHHHHHHhcC---CCceEEeCCCCchhhhhhccCCC
Q 037961           24 FKLIASKT--PKRNLAWDVGTRSGQAAASLAQI-YQHVIATDTSPKQLKFAIKL---PNIRYQLTPTMSITELEQNVATQ   97 (262)
Q Consensus        24 ~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~~~~~   97 (262)
                      ++.+....  +++.+|||+|||+|.++..+++. +.+|+|+|+|+.|++.|+++   ..+++...+      ...+   +
T Consensus       156 ~~~l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~~l~v~~~~~D------~~~l---~  226 (383)
T PRK11705        156 LDLICRKLQLKPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCAGLPVEIRLQD------YRDL---N  226 (383)
T ss_pred             HHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccCeEEEEECc------hhhc---C
Confidence            33444443  47789999999999999999875 78999999999999999864   234444433      3333   4


Q ss_pred             CceeeEEEccccccCC---hhHHHHHHHHhhcCCCeEEEEEecC
Q 037961           98 SSVDLVTIASALHWFD---LPQFYKQVKWVLKKPSGVIAAWTYT  138 (262)
Q Consensus        98 ~~~D~V~~~~~~~~~d---~~~~l~~~~r~Lk~pgG~l~i~~~~  138 (262)
                      ++||.|++..+++|+.   .+.+++++.++|| |||.+++....
T Consensus       227 ~~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~Lk-pGG~lvl~~i~  269 (383)
T PRK11705        227 GQFDRIVSVGMFEHVGPKNYRTYFEVVRRCLK-PDGLFLLHTIG  269 (383)
T ss_pred             CCCCEEEEeCchhhCChHHHHHHHHHHHHHcC-CCcEEEEEEcc
Confidence            6899999999999983   4679999999999 99999986544

>TIGR02081 metW methionine biosynthesis protein MetW

Probab=99.50  E-value=1.6e-13  Score=111.35  Aligned_cols=95  Identities=14%  Similarity=0.133  Sum_probs=77.1

Q ss_pred             HHHHhhCCCCCeEEEEcCcccHhHHHHHhh-CCeEEEEcCCHHHHHHHhcCCCceEEeCCCCchhhhhh-c-cCCCCcee
Q 037961           25 KLIASKTPKRNLAWDVGTRSGQAAASLAQI-YQHVIATDTSPKQLKFAIKLPNIRYQLTPTMSITELEQ-N-VATQSSVD  101 (262)
Q Consensus        25 ~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~D  101 (262)
                      +.+.+.++++.+|||+|||+|.++..+++. +.+++|+|+|+.|++.+++. +++++.++      +++ + ++++++||
T Consensus         5 ~~i~~~i~~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~~-~~~~~~~d------~~~~l~~~~~~sfD   77 (194)
T TIGR02081         5 ESILNLIPPGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVAR-GVNVIQGD------LDEGLEAFPDKSFD   77 (194)
T ss_pred             HHHHHhcCCCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHHc-CCeEEEEE------hhhcccccCCCCcC
Confidence            445555677789999999999999998764 56889999999999988753 56776654      332 2 25678999


Q ss_pred             eEEEccccccC-ChhHHHHHHHHhhc
Q 037961          102 LVTIASALHWF-DLPQFYKQVKWVLK  126 (262)
Q Consensus       102 ~V~~~~~~~~~-d~~~~l~~~~r~Lk  126 (262)
                      +|+++.++||+ |+..+++++.|+++
T Consensus        78 ~Vi~~~~l~~~~d~~~~l~e~~r~~~  103 (194)
T TIGR02081        78 YVILSQTLQATRNPEEILDEMLRVGR  103 (194)
T ss_pred             EEEEhhHhHcCcCHHHHHHHHHHhCC
Confidence            99999999999 99999999988877

This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=99.50  E-value=4.3e-13  Score=100.35  Aligned_cols=107  Identities=22%  Similarity=0.286  Sum_probs=79.7

Q ss_pred             HHHHHHHHhhC--CCCCeEEEEcCcccHhHHHHHhh--CCeEEEEcCCHHHHHHHhcC------CCceEEeCCCCchhhh
Q 037961           21 KELFKLIASKT--PKRNLAWDVGTRSGQAAASLAQI--YQHVIATDTSPKQLKFAIKL------PNIRYQLTPTMSITEL   90 (262)
Q Consensus        21 ~~~~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~~   90 (262)
                      +++...+....  +++.+|||+|||+|..+..+++.  ..+|+++|+|+.+++.+++.      .++.+..++      +
T Consensus         5 ~~~~~~~~~~~~~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~------~   78 (124)
T TIGR02469         5 REVRALTLSKLRLRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGD------A   78 (124)
T ss_pred             HHHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEecc------c
Confidence            44455555554  35679999999999999999986  36899999999999988742      456666554      2


Q ss_pred             hh-ccCCCCceeeEEEccccccCChhHHHHHHHHhhcCCCeEEEEEe
Q 037961           91 EQ-NVATQSSVDLVTIASALHWFDLPQFYKQVKWVLKKPSGVIAAWT  136 (262)
Q Consensus        91 ~~-~~~~~~~~D~V~~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~  136 (262)
                      .. .+...++||.|++..+.+.  ..++++++.++|+ |||+|++-.
T Consensus        79 ~~~~~~~~~~~D~v~~~~~~~~--~~~~l~~~~~~Lk-~gG~li~~~  122 (124)
T TIGR02469        79 PEALEDSLPEPDRVFIGGSGGL--LQEILEAIWRRLR-PGGRIVLNA  122 (124)
T ss_pred             cccChhhcCCCCEEEECCcchh--HHHHHHHHHHHcC-CCCEEEEEe
Confidence            21 1122358999999776543  4589999999999 999999843

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB

Probab=99.49  E-value=2.5e-13  Score=108.68  Aligned_cols=96  Identities=25%  Similarity=0.270  Sum_probs=74.0

Q ss_pred             CCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhcC-----CCceEEeCCCCchhhhhhccCCCCceeeEEEcc
Q 037961           33 KRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKL-----PNIRYQLTPTMSITELEQNVATQSSVDLVTIAS  107 (262)
Q Consensus        33 ~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~  107 (262)
                      +...+||+|||.|..+..|+++|.+|+++|.|+..++.+++.     -.++....      |+++..++ +.||+|++..
T Consensus        30 ~~g~~LDlgcG~GRNalyLA~~G~~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~------Dl~~~~~~-~~yD~I~st~  102 (192)
T PF03848_consen   30 KPGKALDLGCGEGRNALYLASQGFDVTAVDISPVALEKLQRLAEEEGLDIRTRVA------DLNDFDFP-EEYDFIVSTV  102 (192)
T ss_dssp             -SSEEEEES-TTSHHHHHHHHTT-EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-------BGCCBS-T-TTEEEEEEES
T ss_pred             CCCcEEEcCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHHHhhcCceeEEEEe------cchhcccc-CCcCEEEEEE
Confidence            456889999999999999999999999999999999877642     23555554      45555544 6799999999


Q ss_pred             ccccCChhH---HHHHHHHhhcCCCeEEEEEe
Q 037961          108 ALHWFDLPQ---FYKQVKWVLKKPSGVIAAWT  136 (262)
Q Consensus       108 ~~~~~d~~~---~l~~~~r~Lk~pgG~l~i~~  136 (262)
                      ++++++++.   .++.+...++ |||.+++..
T Consensus       103 v~~fL~~~~~~~i~~~m~~~~~-pGG~~li~~  133 (192)
T PF03848_consen  103 VFMFLQRELRPQIIENMKAATK-PGGYNLIVT  133 (192)
T ss_dssp             SGGGS-GGGHHHHHHHHHHTEE-EEEEEEEEE
T ss_pred             EeccCCHHHHHHHHHHHHhhcC-CcEEEEEEE
Confidence            999996554   7899999999 999988744

When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase

Probab=99.48  E-value=2.6e-13  Score=110.07  Aligned_cols=98  Identities=21%  Similarity=0.229  Sum_probs=79.3

Q ss_pred             CCCeEEEEcCcccHhHHHHHhh--CCeEEEEcCCHHHHHHHhc------CCCceEEeCCCCchhhhhhc---cCCCCcee
Q 037961           33 KRNLAWDVGTRSGQAAASLAQI--YQHVIATDTSPKQLKFAIK------LPNIRYQLTPTMSITELEQN---VATQSSVD  101 (262)
Q Consensus        33 ~~~~vlDvGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~------~~~~~~~~~~~~~~~~~~~~---~~~~~~~D  101 (262)
                      ....+||+|||+|.++..++..  ..+++|+|+++.|++.|++      ..++.++.++      +..+   .++++++|
T Consensus        16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d------~~~~~~~~~~~~~~d   89 (194)
T TIGR00091        16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGD------ANELLDKFFPDGSLS   89 (194)
T ss_pred             CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccC------HHHHHHhhCCCCcee
Confidence            4568999999999999999986  4689999999999998864      2578888776      3322   14567899


Q ss_pred             eEEEccccccCCh---------hHHHHHHHHhhcCCCeEEEEEec
Q 037961          102 LVTIASALHWFDL---------PQFYKQVKWVLKKPSGVIAAWTY  137 (262)
Q Consensus       102 ~V~~~~~~~~~d~---------~~~l~~~~r~Lk~pgG~l~i~~~  137 (262)
                      .|++++..+|...         +.+++++.++|| |||.|++.+.
T Consensus        90 ~v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~Lk-pgG~l~~~td  133 (194)
T TIGR00091        90 KVFLNFPDPWPKKRHNKRRITQPHFLKEYANVLK-KGGVIHFKTD  133 (194)
T ss_pred             EEEEECCCcCCCCCccccccCCHHHHHHHHHHhC-CCCEEEEEeC
Confidence            9999998888732         468999999999 9999988553

In E. coli, this protein flanks the DNA repair protein MutY, also called micA.

>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins

Probab=99.48  E-value=3.5e-13  Score=106.61  Aligned_cols=96  Identities=15%  Similarity=0.141  Sum_probs=81.1

Q ss_pred             HHHHhhCCCCCeEEEEcCcccHhHHHHHh-hCCeEEEEcCCHHHHHHHhcCCCceEEeCC-CCchhhhhhccCCCCceee
Q 037961           25 KLIASKTPKRNLAWDVGTRSGQAAASLAQ-IYQHVIATDTSPKQLKFAIKLPNIRYQLTP-TMSITELEQNVATQSSVDL  102 (262)
Q Consensus        25 ~~l~~~~~~~~~vlDvGcG~G~~~~~l~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~D~  102 (262)
                      +.|.+.++++.+|||+|||.|.+...|.. ++.+..|+|++++.+..+.++ ++.++++| ..   +.  ..+++++||.
T Consensus         5 ~~I~~~I~pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~r-Gv~Viq~Dld~---gL--~~f~d~sFD~   78 (193)
T PF07021_consen    5 QIIAEWIEPGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVAR-GVSVIQGDLDE---GL--ADFPDQSFDY   78 (193)
T ss_pred             HHHHHHcCCCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHHc-CCCEEECCHHH---hH--hhCCCCCccE
Confidence            45666778999999999999999999987 588999999999999888765 78888887 21   11  1268999999


Q ss_pred             EEEccccccC-ChhHHHHHHHHhhc
Q 037961          103 VTIASALHWF-DLPQFYKQVKWVLK  126 (262)
Q Consensus       103 V~~~~~~~~~-d~~~~l~~~~r~Lk  126 (262)
                      |+.+++++.+ +|+++++|+.|+-|
T Consensus        79 VIlsqtLQ~~~~P~~vL~EmlRVgr  103 (193)
T PF07021_consen   79 VILSQTLQAVRRPDEVLEEMLRVGR  103 (193)
T ss_pred             EehHhHHHhHhHHHHHHHHHHHhcC
Confidence            9999999999 99999999988855

Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=99.47  E-value=6.6e-13  Score=117.18  Aligned_cols=118  Identities=13%  Similarity=0.153  Sum_probs=85.5

Q ss_pred             HHHHhhCCC--CCeEEEEcCcccHhHHHHHhh--CCeEEEEcCCHHHHHHHhcC---------CCceEEeCCCCchhhhh
Q 037961           25 KLIASKTPK--RNLAWDVGTRSGQAAASLAQI--YQHVIATDTSPKQLKFAIKL---------PNIRYQLTPTMSITELE   91 (262)
Q Consensus        25 ~~l~~~~~~--~~~vlDvGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~---------~~~~~~~~~~~~~~~~~   91 (262)
                      +.++++++.  ..+|||+|||+|.++..+++.  ..+|+++|+|+.+++.++++         .++++..++      ..
T Consensus       218 rllL~~lp~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D------~l  291 (378)
T PRK15001        218 RFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINN------AL  291 (378)
T ss_pred             HHHHHhCCcccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEcc------cc
Confidence            345556543  358999999999999999887  46899999999999999853         134555554      21


Q ss_pred             hccCCCCceeeEEEccccccCC------hhHHHHHHHHhhcCCCeEEEEEecCCCcccHHHHHhh
Q 037961           92 QNVATQSSVDLVTIASALHWFD------LPQFYKQVKWVLKKPSGVIAAWTYTMPEINESVGAVF  150 (262)
Q Consensus        92 ~~~~~~~~~D~V~~~~~~~~~d------~~~~l~~~~r~Lk~pgG~l~i~~~~~~~~~~~~~~~~  150 (262)
                      . .++.++||+|+|+..+|...      ..++++++.++|+ |||.|++.......+...+.+++
T Consensus       292 ~-~~~~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~Lk-pGG~L~iV~nr~l~y~~~L~~~f  354 (378)
T PRK15001        292 S-GVEPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLK-INGELYIVANRHLDYFHKLKKIF  354 (378)
T ss_pred             c-cCCCCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcc-cCCEEEEEEecCcCHHHHHHHHc
Confidence            1 12456899999999998652      3458899999999 99999987655433334444443

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional

Probab=99.46  E-value=7.4e-13  Score=116.00  Aligned_cols=108  Identities=14%  Similarity=0.124  Sum_probs=81.2

Q ss_pred             CCeEEEEcCcccHhHHHHHhhC--CeEEEEcCCHHHHHHHhcC---C--CceEEeCCCCchhhhhhccCCCCceeeEEEc
Q 037961           34 RNLAWDVGTRSGQAAASLAQIY--QHVIATDTSPKQLKFAIKL---P--NIRYQLTPTMSITELEQNVATQSSVDLVTIA  106 (262)
Q Consensus        34 ~~~vlDvGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~---~--~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~  106 (262)
                      ..+|||+|||+|.++..+++.+  .+|+++|+|+.|++.+++.   .  ...+...|      ...  ..+++||+|+++
T Consensus       197 ~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D------~~~--~~~~~fDlIvsN  268 (342)
T PRK09489        197 KGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLEGEVFASN------VFS--DIKGRFDMIISN  268 (342)
T ss_pred             CCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEcc------ccc--ccCCCccEEEEC
Confidence            4579999999999999999874  4899999999999999752   1  23344433      211  125789999999


Q ss_pred             cccccC------ChhHHHHHHHHhhcCCCeEEEEEecCCCcccHHHHHhh
Q 037961          107 SALHWF------DLPQFYKQVKWVLKKPSGVIAAWTYTMPEINESVGAVF  150 (262)
Q Consensus       107 ~~~~~~------d~~~~l~~~~r~Lk~pgG~l~i~~~~~~~~~~~~~~~~  150 (262)
                      ..+|+.      ....+++++.+.|| |||.|.+.......+.+.+++.+
T Consensus       269 PPFH~g~~~~~~~~~~~i~~a~~~Lk-pgG~L~iVan~~l~y~~~l~~~F  317 (342)
T PRK09489        269 PPFHDGIQTSLDAAQTLIRGAVRHLN-SGGELRIVANAFLPYPDLLDETF  317 (342)
T ss_pred             CCccCCccccHHHHHHHHHHHHHhcC-cCCEEEEEEeCCCChHHHHHHHc
Confidence            999973      24679999999999 99999987766544444444444

>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase

Probab=99.46  E-value=7e-13  Score=109.78  Aligned_cols=98  Identities=27%  Similarity=0.319  Sum_probs=80.8

Q ss_pred             CCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhcC-----C-CceEEeCCCCchhhhhhccCC-CCceeeEEE
Q 037961           33 KRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKL-----P-NIRYQLTPTMSITELEQNVAT-QSSVDLVTI  105 (262)
Q Consensus        33 ~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~-----~-~~~~~~~~~~~~~~~~~~~~~-~~~~D~V~~  105 (262)
                      ++.+|||+|||+|.++..+++.+.+++++|+++.+++.+++.     . ++.+...+      +.+++.. +++||+|++
T Consensus        45 ~~~~vLdlG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d------~~~~~~~~~~~~D~i~~  118 (224)
T TIGR01983        45 FGLRVLDVGCGGGLLSEPLARLGANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTS------VEDLAEKGAKSFDVVTC  118 (224)
T ss_pred             CCCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCC------HHHhhcCCCCCccEEEe
Confidence            367899999999999999988888999999999999988752     1 35665543      4444332 478999999


Q ss_pred             ccccccC-ChhHHHHHHHHhhcCCCeEEEEEec
Q 037961          106 ASALHWF-DLPQFYKQVKWVLKKPSGVIAAWTY  137 (262)
Q Consensus       106 ~~~~~~~-d~~~~l~~~~r~Lk~pgG~l~i~~~  137 (262)
                      ...+|++ ++..+++++.++|+ |||.+++...
T Consensus       119 ~~~l~~~~~~~~~l~~~~~~L~-~gG~l~i~~~  150 (224)
T TIGR01983       119 MEVLEHVPDPQAFIRACAQLLK-PGGILFFSTI  150 (224)
T ss_pred             hhHHHhCCCHHHHHHHHHHhcC-CCcEEEEEec
Confidence            9999999 99999999999999 9999887544

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.

>TIGR00537 hemK_rel_arch HemK-related putative methylase

Probab=99.46  E-value=9.2e-13  Score=105.45  Aligned_cols=97  Identities=16%  Similarity=0.239  Sum_probs=76.5

Q ss_pred             CCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhcC-----CCceEEeCCCCchhhhhhccCCCCceeeEEEcc
Q 037961           33 KRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKL-----PNIRYQLTPTMSITELEQNVATQSSVDLVTIAS  107 (262)
Q Consensus        33 ~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~  107 (262)
                      ++.+|||+|||+|.++..++..+.+|+++|+|+.|++.++++     .++++..++      +...  ..++||+|+++.
T Consensus        19 ~~~~vLdlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d------~~~~--~~~~fD~Vi~n~   90 (179)
T TIGR00537        19 KPDDVLEIGAGTGLVAIRLKGKGKCILTTDINPFAVKELRENAKLNNVGLDVVMTD------LFKG--VRGKFDVILFNP   90 (179)
T ss_pred             CCCeEEEeCCChhHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHcCCceEEEEcc------cccc--cCCcccEEEECC
Confidence            456799999999999999999888999999999999988763     345556554      2222  245899999998


Q ss_pred             ccccCC----------------------hhHHHHHHHHhhcCCCeEEEEEecC
Q 037961          108 ALHWFD----------------------LPQFYKQVKWVLKKPSGVIAAWTYT  138 (262)
Q Consensus       108 ~~~~~d----------------------~~~~l~~~~r~Lk~pgG~l~i~~~~  138 (262)
                      .+|..+                      ...+++++.++|+ |||++++....
T Consensus        91 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk-~gG~~~~~~~~  142 (179)
T TIGR00537        91 PYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILK-EGGRVQLIQSS  142 (179)
T ss_pred             CCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhC-CCCEEEEEEec
Confidence            887552                      2457999999999 99999885543

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.

>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase

Probab=99.45  E-value=5.8e-13  Score=110.05  Aligned_cols=93  Identities=18%  Similarity=0.206  Sum_probs=75.4

Q ss_pred             CCCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhcC-------CCceEEeCCCCchhhhhhccCCCCceeeEE
Q 037961           32 PKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKL-------PNIRYQLTPTMSITELEQNVATQSSVDLVT  104 (262)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~  104 (262)
                      .+..+|||+|||+|.++..+++.+.+|+|+|+|+.|++.|++.       .++.+..++      +.+.+   ++||+|+
T Consensus        54 ~~~~~vLDiGcG~G~~~~~la~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d------~~~~~---~~fD~ii  124 (219)
T TIGR02021        54 LKGKRVLDAGCGTGLLSIELAKRGAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVND------LLSLC---GEFDIVV  124 (219)
T ss_pred             CCCCEEEEEeCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECC------hhhCC---CCcCEEE
Confidence            3578899999999999999999889999999999999998753       256677654      44432   7899999


Q ss_pred             EccccccCC---hhHHHHHHHHhhcCCCeEEEE
Q 037961          105 IASALHWFD---LPQFYKQVKWVLKKPSGVIAA  134 (262)
Q Consensus       105 ~~~~~~~~d---~~~~l~~~~r~Lk~pgG~l~i  134 (262)
                      +...++++.   ...+++++.++++ +++.+.+
T Consensus       125 ~~~~l~~~~~~~~~~~l~~i~~~~~-~~~~i~~  156 (219)
T TIGR02021       125 CMDVLIHYPASDMAKALGHLASLTK-ERVIFTF  156 (219)
T ss_pred             EhhHHHhCCHHHHHHHHHHHHHHhC-CCEEEEE
Confidence            999988773   4568999999998 7766654

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=99.45  E-value=2.1e-12  Score=107.69  Aligned_cols=107  Identities=23%  Similarity=0.291  Sum_probs=84.1

Q ss_pred             HHHHHhhC--CCCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhcC-----CCceEEeCCCCchhhhhhcc-C
Q 037961           24 FKLIASKT--PKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKL-----PNIRYQLTPTMSITELEQNV-A   95 (262)
Q Consensus        24 ~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~-----~~~~~~~~~~~~~~~~~~~~-~   95 (262)
                      ++++....  .++..|||+|||+|.++..+++.+.+++++|+++.+++.+++.     ..+.+...+      +...+ .
T Consensus        37 ~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~------~~~~~~~  110 (233)
T PRK05134         37 LNYIREHAGGLFGKRVLDVGCGGGILSESMARLGADVTGIDASEENIEVARLHALESGLKIDYRQTT------AEELAAE  110 (233)
T ss_pred             HHHHHHhccCCCCCeEEEeCCCCCHHHHHHHHcCCeEEEEcCCHHHHHHHHHHHHHcCCceEEEecC------HHHhhhh
Confidence            34444443  3577899999999999999999899999999999999988752     234555443      33332 2


Q ss_pred             CCCceeeEEEccccccC-ChhHHHHHHHHhhcCCCeEEEEEec
Q 037961           96 TQSSVDLVTIASALHWF-DLPQFYKQVKWVLKKPSGVIAAWTY  137 (262)
Q Consensus        96 ~~~~~D~V~~~~~~~~~-d~~~~l~~~~r~Lk~pgG~l~i~~~  137 (262)
                      ..++||+|++..++++. ++..+++.+.++|+ |||.+++...
T Consensus       111 ~~~~fD~Ii~~~~l~~~~~~~~~l~~~~~~L~-~gG~l~v~~~  152 (233)
T PRK05134        111 HPGQFDVVTCMEMLEHVPDPASFVRACAKLVK-PGGLVFFSTL  152 (233)
T ss_pred             cCCCccEEEEhhHhhccCCHHHHHHHHHHHcC-CCcEEEEEec
Confidence            45789999999999999 89999999999999 9999987543

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=99.45  E-value=1.7e-13  Score=110.01  Aligned_cols=128  Identities=20%  Similarity=0.222  Sum_probs=97.4

Q ss_pred             hhhHHHHHHHHh-----hCCCChHHHHHHHHhhC-CCCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhcCCC
Q 037961            3 ELFIKQANLYAV-----ARPNYPKELFKLIASKT-PKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKLPN   76 (262)
Q Consensus         3 ~~F~~~a~~Y~~-----~rp~yp~~~~~~l~~~~-~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~   76 (262)
                      ..|+..|+.++.     ---+.|..+.+.|.... ++..++||+|||||..+..|.....+++|+|+|.+|++.|.+...
T Consensus        89 ~LFD~~Ae~Fd~~LVdkL~Y~vP~~l~emI~~~~~g~F~~~lDLGCGTGL~G~~lR~~a~~ltGvDiS~nMl~kA~eKg~  168 (287)
T COG4976          89 TLFDQYAERFDHILVDKLGYSVPELLAEMIGKADLGPFRRMLDLGCGTGLTGEALRDMADRLTGVDISENMLAKAHEKGL  168 (287)
T ss_pred             HHHHHHHHHHHHHHHHHhcCccHHHHHHHHHhccCCccceeeecccCcCcccHhHHHHHhhccCCchhHHHHHHHHhccc
Confidence            467777777643     22234666666665544 357899999999999999999999999999999999999986532


Q ss_pred             ceEEeCCCCchhhhhh-cc-CCCCceeeEEEccccccC-ChhHHHHHHHHhhcCCCeEEEEEe
Q 037961           77 IRYQLTPTMSITELEQ-NV-ATQSSVDLVTIASALHWF-DLPQFYKQVKWVLKKPSGVIAAWT  136 (262)
Q Consensus        77 ~~~~~~~~~~~~~~~~-~~-~~~~~~D~V~~~~~~~~~-d~~~~l~~~~r~Lk~pgG~l~i~~  136 (262)
                      ...+.     .+++.. +. ..+..||+|++.-++.++ +.+.++.-+...|+ |||.|++..
T Consensus       169 YD~L~-----~Aea~~Fl~~~~~er~DLi~AaDVl~YlG~Le~~~~~aa~~L~-~gGlfaFSv  225 (287)
T COG4976         169 YDTLY-----VAEAVLFLEDLTQERFDLIVAADVLPYLGALEGLFAGAAGLLA-PGGLFAFSV  225 (287)
T ss_pred             hHHHH-----HHHHHHHhhhccCCcccchhhhhHHHhhcchhhHHHHHHHhcC-CCceEEEEe
Confidence            21111     123331 22 357789999999999999 99999999999999 999999844

>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.44  E-value=5.5e-13  Score=112.33  Aligned_cols=149  Identities=17%  Similarity=0.122  Sum_probs=100.2

Q ss_pred             HHHHHhhCC--CCCeEEEEcCcccHhHHHHHhhCC-eEEEEcCCHHHHHHHh---cC--CCceEEeCCCCchhhhhhccC
Q 037961           24 FKLIASKTP--KRNLAWDVGTRSGQAAASLAQIYQ-HVIATDTSPKQLKFAI---KL--PNIRYQLTPTMSITELEQNVA   95 (262)
Q Consensus        24 ~~~l~~~~~--~~~~vlDvGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~---~~--~~~~~~~~~~~~~~~~~~~~~   95 (262)
                      .+++..+++  .+.+|||||||.|.++..++..|+ .|+|+|+++-...+..   +.  .........    -.+++++.
T Consensus       104 W~rl~p~l~~L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lp----lgvE~Lp~  179 (315)
T PF08003_consen  104 WDRLLPHLPDLKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELP----LGVEDLPN  179 (315)
T ss_pred             HHHHHhhhCCcCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcC----cchhhccc
Confidence            455666664  678999999999999999999887 5999999998876643   21  122222111    13566765


Q ss_pred             CCCceeeEEEccccccC-ChhHHHHHHHHhhcCCCeEEEEEec-CCCcccHHHHHhhcc-cccCCCCC-CccccchhHHh
Q 037961           96 TQSSVDLVTIASALHWF-DLPQFYKQVKWVLKKPSGVIAAWTY-TMPEINESVGAVFKP-FDTIDCNP-FWAPQRKLVDK  171 (262)
Q Consensus        96 ~~~~~D~V~~~~~~~~~-d~~~~l~~~~r~Lk~pgG~l~i~~~-~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~  171 (262)
                       .++||+|+|...++|. +|-..+.++.+.|+ |||.|++=+. ....-   -..++.. -+. .+.. |+-|...-+.+
T Consensus       180 -~~~FDtVF~MGVLYHrr~Pl~~L~~Lk~~L~-~gGeLvLETlvi~g~~---~~~L~P~~rYa-~m~nv~FiPs~~~L~~  253 (315)
T PF08003_consen  180 -LGAFDTVFSMGVLYHRRSPLDHLKQLKDSLR-PGGELVLETLVIDGDE---NTVLVPEDRYA-KMRNVWFIPSVAALKN  253 (315)
T ss_pred             -cCCcCEEEEeeehhccCCHHHHHHHHHHhhC-CCCEEEEEEeeecCCC---ceEEccCCccc-CCCceEEeCCHHHHHH
Confidence             7889999999999999 99999999999999 9999998222 11110   0111111 111 3333 33366666777


Q ss_pred             cCCCCCCCCCCCC
Q 037961          172 KYMSIDFPFEPVD  184 (262)
Q Consensus       172 ~~~~~~~~f~~v~  184 (262)
                      .+...+  |++|+
T Consensus       254 wl~r~g--F~~v~  264 (315)
T PF08003_consen  254 WLERAG--FKDVR  264 (315)
T ss_pred             HHHHcC--CceEE
Confidence            777777  54443

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.42  E-value=1.8e-12  Score=106.06  Aligned_cols=101  Identities=16%  Similarity=0.163  Sum_probs=76.6

Q ss_pred             HHHHHHHhhC--CCCCeEEEEcCcccHhHHHHHhh---CCeEEEEcCCHHHHHHHhcC-------CCceEEeCCCCchhh
Q 037961           22 ELFKLIASKT--PKRNLAWDVGTRSGQAAASLAQI---YQHVIATDTSPKQLKFAIKL-------PNIRYQLTPTMSITE   89 (262)
Q Consensus        22 ~~~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~   89 (262)
                      .+...+.+.+  .++.+|||+|||+|..+..+++.   ..+|+++|+++.|++.|+++       .++.+..+|      
T Consensus        59 ~~~~~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d------  132 (205)
T PRK13944         59 HMVAMMCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGD------  132 (205)
T ss_pred             HHHHHHHHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECC------
Confidence            3455555554  46689999999999999988875   36899999999999988752       236677665      


Q ss_pred             hhhccCCCCceeeEEEccccccCChhHHHHHHHHhhcCCCeEEEE
Q 037961           90 LEQNVATQSSVDLVTIASALHWFDLPQFYKQVKWVLKKPSGVIAA  134 (262)
Q Consensus        90 ~~~~~~~~~~~D~V~~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i  134 (262)
                      +.......++||+|++..+++++.     +++.++|+ |||.|++
T Consensus       133 ~~~~~~~~~~fD~Ii~~~~~~~~~-----~~l~~~L~-~gG~lvi  171 (205)
T PRK13944        133 GKRGLEKHAPFDAIIVTAAASTIP-----SALVRQLK-DGGVLVI  171 (205)
T ss_pred             cccCCccCCCccEEEEccCcchhh-----HHHHHhcC-cCcEEEE
Confidence            333222457899999998877653     47889999 9999987

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=99.42  E-value=1.2e-12  Score=107.87  Aligned_cols=96  Identities=15%  Similarity=-0.012  Sum_probs=75.2

Q ss_pred             CCCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhcC------------------CCceEEeCCCCchhhhhhc
Q 037961           32 PKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKL------------------PNIRYQLTPTMSITELEQN   93 (262)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~------------------~~~~~~~~~~~~~~~~~~~   93 (262)
                      +++.+|||+|||.|..+..|+++|.+|+|+|+|+..++.+.+.                  .++++.++|      +.++
T Consensus        36 ~~~~rvL~~gCG~G~da~~LA~~G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D------~~~l  109 (218)
T PRK13255         36 PAGSRVLVPLCGKSLDMLWLAEQGHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGD------FFAL  109 (218)
T ss_pred             CCCCeEEEeCCCChHhHHHHHhCCCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECc------ccCC
Confidence            4667999999999999999999999999999999999976421                  234455544      4333


Q ss_pred             cC-CCCceeeEEEccccccCC---hhHHHHHHHHhhcCCCeEEEE
Q 037961           94 VA-TQSSVDLVTIASALHWFD---LPQFYKQVKWVLKKPSGVIAA  134 (262)
Q Consensus        94 ~~-~~~~~D~V~~~~~~~~~d---~~~~l~~~~r~Lk~pgG~l~i  134 (262)
                      +. ..+.||+|+-..++|+++   ..+.++.+.++|+ |||++++
T Consensus       110 ~~~~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~-pgG~~~l  153 (218)
T PRK13255        110 TAADLADVDAVYDRAALIALPEEMRERYVQQLAALLP-AGCRGLL  153 (218)
T ss_pred             CcccCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcC-CCCeEEE
Confidence            22 235899999988999884   3458999999999 9997554

>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]

Probab=99.42  E-value=5.8e-13  Score=106.36  Aligned_cols=100  Identities=24%  Similarity=0.260  Sum_probs=80.1

Q ss_pred             CCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhcC-CCceEEeCCCCchhhhhhccCCCCceeeEEEcccccc
Q 037961           33 KRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKL-PNIRYQLTPTMSITELEQNVATQSSVDLVTIASALHW  111 (262)
Q Consensus        33 ~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~~~  111 (262)
                      ....|||||||+|..+..|...|...+|+|+|+.|++.|.+. -.-.++.+|     -.+-+|+.+++||.|++..+++|
T Consensus        50 ~~~~iLDIGCGsGLSg~vL~~~Gh~wiGvDiSpsML~~a~~~e~egdlil~D-----MG~GlpfrpGtFDg~ISISAvQW  124 (270)
T KOG1541|consen   50 KSGLILDIGCGSGLSGSVLSDSGHQWIGVDISPSMLEQAVERELEGDLILCD-----MGEGLPFRPGTFDGVISISAVQW  124 (270)
T ss_pred             CCcEEEEeccCCCcchheeccCCceEEeecCCHHHHHHHHHhhhhcCeeeee-----cCCCCCCCCCccceEEEeeeeee
Confidence            478899999999999999999999999999999999999852 111233332     23668899999999999999999


Q ss_pred             C-Chh-------H----HHHHHHHhhcCCCeEEEEEecC
Q 037961          112 F-DLP-------Q----FYKQVKWVLKKPSGVIAAWTYT  138 (262)
Q Consensus       112 ~-d~~-------~----~l~~~~r~Lk~pgG~l~i~~~~  138 (262)
                      + +..       +    ++.-++.+|+ +|+..++-.|.
T Consensus       125 LcnA~~s~~~P~~Rl~~FF~tLy~~l~-rg~raV~QfYp  162 (270)
T KOG1541|consen  125 LCNADKSLHVPKKRLLRFFGTLYSCLK-RGARAVLQFYP  162 (270)
T ss_pred             ecccCccccChHHHHHHHhhhhhhhhc-cCceeEEEecc
Confidence            8 422       2    6778999999 99998884443

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.41  E-value=2.3e-12  Score=105.87  Aligned_cols=102  Identities=19%  Similarity=0.182  Sum_probs=77.5

Q ss_pred             HHHHHHHHhhC--CCCCeEEEEcCcccHhHHHHHhhC---CeEEEEcCCHHHHHHHhcC------CCceEEeCCCCchhh
Q 037961           21 KELFKLIASKT--PKRNLAWDVGTRSGQAAASLAQIY---QHVIATDTSPKQLKFAIKL------PNIRYQLTPTMSITE   89 (262)
Q Consensus        21 ~~~~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~   89 (262)
                      +.+...+....  .++.+|||+|||+|..+..+++..   .+|+++|+++.+++.++++      .++++..+|      
T Consensus        62 p~~~~~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd------  135 (212)
T PRK13942         62 IHMVAIMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGD------  135 (212)
T ss_pred             HHHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECC------
Confidence            34445555443  578899999999999999888763   5899999999999998752      467788765      


Q ss_pred             hhhccCCCCceeeEEEccccccCChhHHHHHHHHhhcCCCeEEEE
Q 037961           90 LEQNVATQSSVDLVTIASALHWFDLPQFYKQVKWVLKKPSGVIAA  134 (262)
Q Consensus        90 ~~~~~~~~~~~D~V~~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i  134 (262)
                      +.....+.++||+|++..+++.+     .+.+.+.|| |||+|++
T Consensus       136 ~~~~~~~~~~fD~I~~~~~~~~~-----~~~l~~~Lk-pgG~lvi  174 (212)
T PRK13942        136 GTLGYEENAPYDRIYVTAAGPDI-----PKPLIEQLK-DGGIMVI  174 (212)
T ss_pred             cccCCCcCCCcCEEEECCCcccc-----hHHHHHhhC-CCcEEEE
Confidence            33333356789999988776543     346778999 9999988

>PRK14967 putative methyltransferase; Provisional

Probab=99.41  E-value=5.4e-12  Score=104.54  Aligned_cols=116  Identities=18%  Similarity=0.137  Sum_probs=81.8

Q ss_pred             hCCCChHHH-HHHHHhh-CCCCCeEEEEcCcccHhHHHHHhhCC-eEEEEcCCHHHHHHHhcC-----CCceEEeCCCCc
Q 037961           15 ARPNYPKEL-FKLIASK-TPKRNLAWDVGTRSGQAAASLAQIYQ-HVIATDTSPKQLKFAIKL-----PNIRYQLTPTMS   86 (262)
Q Consensus        15 ~rp~yp~~~-~~~l~~~-~~~~~~vlDvGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~-----~~~~~~~~~~~~   86 (262)
                      ++|..-..+ .+.+... ..++.+|||+|||+|.++..++..+. +++++|+|+.+++.++++     .++.+..++   
T Consensus        16 ~~p~~ds~~l~~~l~~~~~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d---   92 (223)
T PRK14967         16 YRPQEDTQLLADALAAEGLGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGVDVDVRRGD---   92 (223)
T ss_pred             cCCCCcHHHHHHHHHhcccCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECc---
Confidence            455543333 3444332 35678999999999999999988765 999999999999988753     235555554   


Q ss_pred             hhhhhhccCCCCceeeEEEccccccC-C---------------------hhHHHHHHHHhhcCCCeEEEEEecC
Q 037961           87 ITELEQNVATQSSVDLVTIASALHWF-D---------------------LPQFYKQVKWVLKKPSGVIAAWTYT  138 (262)
Q Consensus        87 ~~~~~~~~~~~~~~D~V~~~~~~~~~-d---------------------~~~~l~~~~r~Lk~pgG~l~i~~~~  138 (262)
                         +... +++++||+|+++...+.. +                     .+.+++++.++|| |||++++....
T Consensus        93 ---~~~~-~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk-~gG~l~~~~~~  161 (223)
T PRK14967         93 ---WARA-VEFRPFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLA-PGGSLLLVQSE  161 (223)
T ss_pred             ---hhhh-ccCCCeeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcC-CCcEEEEEEec
Confidence               3222 356789999998654432 1                     3457889999999 99999875433

>PRK04266 fibrillarin; Provisional

Probab=99.41  E-value=2e-12  Score=106.88  Aligned_cols=98  Identities=17%  Similarity=0.153  Sum_probs=70.7

Q ss_pred             CCCCeEEEEcCcccHhHHHHHhhC--CeEEEEcCCHHHHHHH----hcCCCceEEeCCCCchhhhhhccCCCCceeeEEE
Q 037961           32 PKRNLAWDVGTRSGQAAASLAQIY--QHVIATDTSPKQLKFA----IKLPNIRYQLTPTMSITELEQNVATQSSVDLVTI  105 (262)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~  105 (262)
                      .++.+|||+|||+|.++..+++..  ..|+|+|+++.|++.+    ++..++..+.++....  ....++. .+||+|++
T Consensus        71 ~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~--~~~~~l~-~~~D~i~~  147 (226)
T PRK04266         71 KKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKP--ERYAHVV-EKVDVIYQ  147 (226)
T ss_pred             CCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCc--chhhhcc-ccCCEEEE
Confidence            478899999999999999999874  5899999999988854    3346788887761100  0011222 46999996


Q ss_pred             ccccccCChhHHHHHHHHhhcCCCeEEEE
Q 037961          106 ASALHWFDLPQFYKQVKWVLKKPSGVIAA  134 (262)
Q Consensus       106 ~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i  134 (262)
                      .....| ....+++++.++|| |||.|++
T Consensus       148 d~~~p~-~~~~~L~~~~r~LK-pGG~lvI  174 (226)
T PRK04266        148 DVAQPN-QAEIAIDNAEFFLK-DGGYLLL  174 (226)
T ss_pred             CCCChh-HHHHHHHHHHHhcC-CCcEEEE
Confidence            533211 11346899999999 9999998

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A

Probab=99.40  E-value=1.1e-12  Score=97.37  Aligned_cols=95  Identities=19%  Similarity=0.232  Sum_probs=75.6

Q ss_pred             CeEEEEcCcccHhHHHHHhhC-CeEEEEcCCHHHHHHHhcC-------CCceEEeCCCCchhhhhhcc--CCCCceeeEE
Q 037961           35 NLAWDVGTRSGQAAASLAQIY-QHVIATDTSPKQLKFAIKL-------PNIRYQLTPTMSITELEQNV--ATQSSVDLVT  104 (262)
Q Consensus        35 ~~vlDvGcG~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~~~~~~--~~~~~~D~V~  104 (262)
                      .+|||+|||+|.++..+++.+ .+++|+|+++..++.++..       .++++.++|      +.+..  +++++||+|+
T Consensus         2 ~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D------~~~~~~~~~~~~~D~Iv   75 (117)
T PF13659_consen    2 DRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGD------ARDLPEPLPDGKFDLIV   75 (117)
T ss_dssp             EEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESH------HHHHHHTCTTT-EEEEE
T ss_pred             CEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECc------hhhchhhccCceeEEEE
Confidence            579999999999999999998 8999999999999998852       457778765      43433  5789999999


Q ss_pred             EccccccC--C-------hhHHHHHHHHhhcCCCeEEEEEe
Q 037961          105 IASALHWF--D-------LPQFYKQVKWVLKKPSGVIAAWT  136 (262)
Q Consensus       105 ~~~~~~~~--d-------~~~~l~~~~r~Lk~pgG~l~i~~  136 (262)
                      ++..+...  +       ...+++++.++|| |||.++++.
T Consensus        76 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~L~-~gG~~~~~~  115 (117)
T PF13659_consen   76 TNPPYGPRSGDKAALRRLYSRFLEAAARLLK-PGGVLVFIT  115 (117)
T ss_dssp             E--STTSBTT----GGCHHHHHHHHHHHHEE-EEEEEEEEE
T ss_pred             ECCCCccccccchhhHHHHHHHHHHHHHHcC-CCeEEEEEe
Confidence            99888743  1       2458999999999 999999865

...

>TIGR03438 probable methyltransferase

Probab=99.40  E-value=2.8e-12  Score=110.89  Aligned_cols=104  Identities=17%  Similarity=0.148  Sum_probs=76.1

Q ss_pred             HHHHHhhCCCCCeEEEEcCcccHhHHHHHhh---CCeEEEEcCCHHHHHHHhcC-----CCc--eEEeCCCCchhhhhh-
Q 037961           24 FKLIASKTPKRNLAWDVGTRSGQAAASLAQI---YQHVIATDTSPKQLKFAIKL-----PNI--RYQLTPTMSITELEQ-   92 (262)
Q Consensus        24 ~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~-----~~~--~~~~~~~~~~~~~~~-   92 (262)
                      ...|...++++..|||+|||+|..+..|++.   +.+|+++|+|++|++.+++.     +++  ..+.+|      +.+ 
T Consensus        54 ~~~ia~~~~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD------~~~~  127 (301)
T TIGR03438        54 ADEIAAATGAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICAD------FTQP  127 (301)
T ss_pred             HHHHHHhhCCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEc------ccch
Confidence            3334445567788999999999999999887   57899999999999988642     443  445665      221 


Q ss_pred             ccCCC----CceeeEEEccccccCChhH---HHHHHHHhhcCCCeEEEE
Q 037961           93 NVATQ----SSVDLVTIASALHWFDLPQ---FYKQVKWVLKKPSGVIAA  134 (262)
Q Consensus        93 ~~~~~----~~~D~V~~~~~~~~~d~~~---~l~~~~r~Lk~pgG~l~i  134 (262)
                      .+++.    +...++++..++++++++.   ++++++++|+ |||.|++
T Consensus       128 ~~~~~~~~~~~~~~~~~gs~~~~~~~~e~~~~L~~i~~~L~-pgG~~li  175 (301)
T TIGR03438       128 LALPPEPAAGRRLGFFPGSTIGNFTPEEAVAFLRRIRQLLG-PGGGLLI  175 (301)
T ss_pred             hhhhcccccCCeEEEEecccccCCCHHHHHHHHHHHHHhcC-CCCEEEE
Confidence            11122    2344566678899885444   7999999999 9999987

This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases

>TIGR00438 rrmJ cell division protein FtsJ

Probab=99.39  E-value=3e-12  Score=103.32  Aligned_cols=104  Identities=21%  Similarity=0.246  Sum_probs=72.9

Q ss_pred             hCCCCCeEEEEcCcccHhHHHHHhhC---CeEEEEcCCHHHHHHHhcCCCceEEeCCCCchhhhhhc--cCCCCceeeEE
Q 037961           30 KTPKRNLAWDVGTRSGQAAASLAQIY---QHVIATDTSPKQLKFAIKLPNIRYQLTPTMSITELEQN--VATQSSVDLVT  104 (262)
Q Consensus        30 ~~~~~~~vlDvGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~D~V~  104 (262)
                      ..+++.+|||+|||+|.++..++...   .+|+++|+|+.+     ..+++.+..++.......+.+  .++.++||+|+
T Consensus        29 ~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----~~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~V~  103 (188)
T TIGR00438        29 LIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----PIENVDFIRGDFTDEEVLNKIRERVGDDKVDVVM  103 (188)
T ss_pred             ccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----cCCCceEEEeeCCChhHHHHHHHHhCCCCccEEE
Confidence            34678899999999999999988764   369999999865     335677776651110001111  13566899999


Q ss_pred             Eccccc----cC-C-------hhHHHHHHHHhhcCCCeEEEEEecCC
Q 037961          105 IASALH----WF-D-------LPQFYKQVKWVLKKPSGVIAAWTYTM  139 (262)
Q Consensus       105 ~~~~~~----~~-d-------~~~~l~~~~r~Lk~pgG~l~i~~~~~  139 (262)
                      +..+.|    |. +       .+.+++.+.++|+ |||++++..+..
T Consensus       104 ~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~Lk-pgG~lvi~~~~~  149 (188)
T TIGR00438       104 SDAAPNISGYWDIDHLRSIDLVELALDIAKEVLK-PKGNFVVKVFQG  149 (188)
T ss_pred             cCCCCCCCCCccccHHHHHHHHHHHHHHHHHHcc-CCCEEEEEEccC
Confidence            875432    33 3       2578999999999 999999855443

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=99.39  E-value=3.9e-12  Score=104.81  Aligned_cols=101  Identities=19%  Similarity=0.154  Sum_probs=75.6

Q ss_pred             HHHHHHhhC--CCCCeEEEEcCcccHhHHHHHhhCC---eEEEEcCCHHHHHHHhcC------CCceEEeCCCCchhhhh
Q 037961           23 LFKLIASKT--PKRNLAWDVGTRSGQAAASLAQIYQ---HVIATDTSPKQLKFAIKL------PNIRYQLTPTMSITELE   91 (262)
Q Consensus        23 ~~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~~~   91 (262)
                      +...+...+  .++.+|||+|||+|..+..+++...   +|+++|+++.+++.|+++      .++.++.++      +.
T Consensus        65 ~~~~~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d------~~  138 (215)
T TIGR00080        65 MVAMMTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGD------GT  138 (215)
T ss_pred             HHHHHHHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECC------cc
Confidence            344554443  4778999999999999999998754   499999999999998753      467777765      22


Q ss_pred             hccCCCCceeeEEEccccccCChhHHHHHHHHhhcCCCeEEEEE
Q 037961           92 QNVATQSSVDLVTIASALHWFDLPQFYKQVKWVLKKPSGVIAAW  135 (262)
Q Consensus        92 ~~~~~~~~~D~V~~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~  135 (262)
                      .......+||+|++..+...+     .+.+.+.|+ |||+|++-
T Consensus       139 ~~~~~~~~fD~Ii~~~~~~~~-----~~~~~~~L~-~gG~lv~~  176 (215)
T TIGR00080       139 QGWEPLAPYDRIYVTAAGPKI-----PEALIDQLK-EGGILVMP  176 (215)
T ss_pred             cCCcccCCCCEEEEcCCcccc-----cHHHHHhcC-cCcEEEEE
Confidence            222234689999987665443     456889999 99999883

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=99.39  E-value=1e-12  Score=112.99  Aligned_cols=104  Identities=18%  Similarity=0.244  Sum_probs=77.0

Q ss_pred             HHHHHhhCCCCCeEEEEcCcccHhHHHHHhhCC-eEEEEcCCHHHHHHHhcC---CC----ceEEeCCCCchhhhhhccC
Q 037961           24 FKLIASKTPKRNLAWDVGTRSGQAAASLAQIYQ-HVIATDTSPKQLKFAIKL---PN----IRYQLTPTMSITELEQNVA   95 (262)
Q Consensus        24 ~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~---~~----~~~~~~~~~~~~~~~~~~~   95 (262)
                      .+.+.....++.+|||+|||+|.++..++..+. +|+|+|+|+.+++.|+++   .+    +.....+      .  ...
T Consensus       150 l~~l~~~~~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~------~--~~~  221 (288)
T TIGR00406       150 LEWLEDLDLKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIY------L--EQP  221 (288)
T ss_pred             HHHHHhhcCCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecc------c--ccc
Confidence            344444556778999999999999998888765 899999999999999863   11    2222221      1  122


Q ss_pred             CCCceeeEEEccccccCChhHHHHHHHHhhcCCCeEEEEEecC
Q 037961           96 TQSSVDLVTIASALHWFDLPQFYKQVKWVLKKPSGVIAAWTYT  138 (262)
Q Consensus        96 ~~~~~D~V~~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~~  138 (262)
                      .+++||+|+++...+.  ...++.++.++|| |||.|++....
T Consensus       222 ~~~~fDlVvan~~~~~--l~~ll~~~~~~Lk-pgG~li~sgi~  261 (288)
T TIGR00406       222 IEGKADVIVANILAEV--IKELYPQFSRLVK-PGGWLILSGIL  261 (288)
T ss_pred             cCCCceEEEEecCHHH--HHHHHHHHHHHcC-CCcEEEEEeCc
Confidence            4678999999865443  3568999999999 99999986654

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=99.37  E-value=9.3e-12  Score=100.32  Aligned_cols=110  Identities=20%  Similarity=0.177  Sum_probs=80.9

Q ss_pred             CCCChHHHHHHHHhhC--CCCCeEEEEcCcccHhHHHHHhhC--CeEEEEcCCHHHHHHHhcC------CCceEEeCCCC
Q 037961           16 RPNYPKELFKLIASKT--PKRNLAWDVGTRSGQAAASLAQIY--QHVIATDTSPKQLKFAIKL------PNIRYQLTPTM   85 (262)
Q Consensus        16 rp~yp~~~~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~   85 (262)
                      +|--++.+...+...+  .++.+|||+|||+|.++..+++.+  .+|+++|+|+.+++.++++      .++++..++  
T Consensus        12 ~~~~~~~~r~~~~~~l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d--   89 (187)
T PRK08287         12 VPMTKEEVRALALSKLELHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGE--   89 (187)
T ss_pred             CCCchHHHHHHHHHhcCCCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecC--
Confidence            4433445555444443  477899999999999999998864  5899999999999988752      356666654  


Q ss_pred             chhhhhhccCCCCceeeEEEccccccCChhHHHHHHHHhhcCCCeEEEEEe
Q 037961           86 SITELEQNVATQSSVDLVTIASALHWFDLPQFYKQVKWVLKKPSGVIAAWT  136 (262)
Q Consensus        86 ~~~~~~~~~~~~~~~D~V~~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~  136 (262)
                          +. .++ .++||+|++....+  ....+++.+.++|+ |||.+++..
T Consensus        90 ----~~-~~~-~~~~D~v~~~~~~~--~~~~~l~~~~~~Lk-~gG~lv~~~  131 (187)
T PRK08287         90 ----AP-IEL-PGKADAIFIGGSGG--NLTAIIDWSLAHLH-PGGRLVLTF  131 (187)
T ss_pred             ----ch-hhc-CcCCCEEEECCCcc--CHHHHHHHHHHhcC-CCeEEEEEE
Confidence                21 122 35799999876544  35678999999999 999998743

>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional

Probab=99.36  E-value=5.1e-12  Score=111.24  Aligned_cols=100  Identities=18%  Similarity=0.235  Sum_probs=81.9

Q ss_pred             CCCeEEEEcCcccHhHHHHHhh--CCeEEEEcCCHHHHHHHhc------CCCceEEeCCCCchhhhhhc--cCCCCceee
Q 037961           33 KRNLAWDVGTRSGQAAASLAQI--YQHVIATDTSPKQLKFAIK------LPNIRYQLTPTMSITELEQN--VATQSSVDL  102 (262)
Q Consensus        33 ~~~~vlDvGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~------~~~~~~~~~~~~~~~~~~~~--~~~~~~~D~  102 (262)
                      .+..+||||||+|.++..++..  ...++|+|+++.|++.+.+      ..++.++.+|      +..+  .++++++|.
T Consensus       122 ~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~D------A~~ll~~~~~~s~D~  195 (390)
T PRK14121        122 QEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYD------ARLLLELLPSNSVEK  195 (390)
T ss_pred             CCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECC------HHHhhhhCCCCceeE
Confidence            4568999999999999999987  4689999999999988763      3578888776      3222  357899999


Q ss_pred             EEEccccccC-Ch------hHHHHHHHHhhcCCCeEEEEEecCC
Q 037961          103 VTIASALHWF-DL------PQFYKQVKWVLKKPSGVIAAWTYTM  139 (262)
Q Consensus       103 V~~~~~~~~~-d~------~~~l~~~~r~Lk~pgG~l~i~~~~~  139 (262)
                      |++++...|. .+      ..+++++.|+|+ |||.+.+.+...
T Consensus       196 I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLk-pGG~l~l~TD~~  238 (390)
T PRK14121        196 IFVHFPVPWDKKPHRRVISEDFLNEALRVLK-PGGTLELRTDSE  238 (390)
T ss_pred             EEEeCCCCccccchhhccHHHHHHHHHHHcC-CCcEEEEEEECH
Confidence            9999888887 33      579999999999 999999966544

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=99.36  E-value=2.3e-12  Score=108.60  Aligned_cols=104  Identities=17%  Similarity=0.156  Sum_probs=75.4

Q ss_pred             HHHHHHHhhCCCCCeEEEEcCcccHhHHHHHhhCC-eEEEEcCCHHHHHHHhcC---CCceEEeCCCCchhhhhhccCCC
Q 037961           22 ELFKLIASKTPKRNLAWDVGTRSGQAAASLAQIYQ-HVIATDTSPKQLKFAIKL---PNIRYQLTPTMSITELEQNVATQ   97 (262)
Q Consensus        22 ~~~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~~~~~   97 (262)
                      ..++.+.....++.+|||+|||+|.++..+++.+. +|+|+|+|+.+++.|+++   .++.   ..       ..++..+
T Consensus       108 ~~l~~l~~~~~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~~---~~-------~~~~~~~  177 (250)
T PRK00517        108 LCLEALEKLVLPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGVE---LN-------VYLPQGD  177 (250)
T ss_pred             HHHHHHHhhcCCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCC---ce-------EEEccCC
Confidence            34555655566888999999999999998888776 499999999999998864   2221   00       0011122


Q ss_pred             CceeeEEEccccccCChhHHHHHHHHhhcCCCeEEEEEecC
Q 037961           98 SSVDLVTIASALHWFDLPQFYKQVKWVLKKPSGVIAAWTYT  138 (262)
Q Consensus        98 ~~~D~V~~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~~  138 (262)
                      .+||+|+++...+.  ...+++++.++|| |||.+++....
T Consensus       178 ~~fD~Vvani~~~~--~~~l~~~~~~~Lk-pgG~lilsgi~  215 (250)
T PRK00517        178 LKADVIVANILANP--LLELAPDLARLLK-PGGRLILSGIL  215 (250)
T ss_pred             CCcCEEEEcCcHHH--HHHHHHHHHHhcC-CCcEEEEEECc
Confidence            37999998754332  3568899999999 99999986543

>TIGR01177 conserved hypothetical protein TIGR01177

Probab=99.36  E-value=1.1e-11  Score=108.59  Aligned_cols=114  Identities=15%  Similarity=0.053  Sum_probs=86.6

Q ss_pred             HHHHHHHHhh--CCCCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhcC------CCceEEeCCCCchhhhhh
Q 037961           21 KELFKLIASK--TPKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKL------PNIRYQLTPTMSITELEQ   92 (262)
Q Consensus        21 ~~~~~~l~~~--~~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~~~~   92 (262)
                      +.+...+.+.  .+++..|||.|||+|.++..++..+.+++|+|+++.|++.++++      .++.+..+      |+.+
T Consensus       168 ~~la~~~~~l~~~~~g~~vLDp~cGtG~~lieaa~~~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~------D~~~  241 (329)
T TIGR01177       168 PKLARAMVNLARVTEGDRVLDPFCGTGGFLIEAGLMGAKVIGCDIDWKMVAGARINLEHYGIEDFFVKRG------DATK  241 (329)
T ss_pred             HHHHHHHHHHhCCCCcCEEEECCCCCCHHHHHHHHhCCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEec------chhc
Confidence            4455555443  35778999999999999998888899999999999999988753      34555554      4666


Q ss_pred             ccCCCCceeeEEEcccccc--------C-C-hhHHHHHHHHhhcCCCeEEEEEecCCCc
Q 037961           93 NVATQSSVDLVTIASALHW--------F-D-LPQFYKQVKWVLKKPSGVIAAWTYTMPE  141 (262)
Q Consensus        93 ~~~~~~~~D~V~~~~~~~~--------~-d-~~~~l~~~~r~Lk~pgG~l~i~~~~~~~  141 (262)
                      +++++++||+|+++..+.-        . + ...+++++.++|| |||.++++......
T Consensus       242 l~~~~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk-~gG~lv~~~~~~~~  299 (329)
T TIGR01177       242 LPLSSESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLK-SEGWIVYAVPTRID  299 (329)
T ss_pred             CCcccCCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHcc-CCcEEEEEEcCCCC
Confidence            7767789999999755421        1 1 3669999999999 99999987765433

This family is found exclusively in the Archaea.

>PLN03075 nicotianamine synthase; Provisional

Probab=99.35  E-value=1.2e-11  Score=105.24  Aligned_cols=94  Identities=15%  Similarity=0.127  Sum_probs=72.8

Q ss_pred             CCCeEEEEcCcccHhHHH-HH-hh--CCeEEEEcCCHHHHHHHhcC--------CCceEEeCCCCchhhhhhccCCCCce
Q 037961           33 KRNLAWDVGTRSGQAAAS-LA-QI--YQHVIATDTSPKQLKFAIKL--------PNIRYQLTPTMSITELEQNVATQSSV  100 (262)
Q Consensus        33 ~~~~vlDvGcG~G~~~~~-l~-~~--~~~v~~vD~s~~~~~~a~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (262)
                      ++.+|+|||||+|.++.. ++ ..  ..+++++|+++++++.|++.        .++.|..+|      +.+.....+.|
T Consensus       123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~D------a~~~~~~l~~F  196 (296)
T PLN03075        123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTAD------VMDVTESLKEY  196 (296)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECc------hhhcccccCCc
Confidence            668899999998855444 33 23  45799999999999999863        358888765      33332234689


Q ss_pred             eeEEEccccccC---ChhHHHHHHHHhhcCCCeEEEE
Q 037961          101 DLVTIASALHWF---DLPQFYKQVKWVLKKPSGVIAA  134 (262)
Q Consensus       101 D~V~~~~~~~~~---d~~~~l~~~~r~Lk~pgG~l~i  134 (262)
                      |+|++. ++|.+   ++.++++.+.+.|+ |||.|++
T Consensus       197 DlVF~~-ALi~~dk~~k~~vL~~l~~~Lk-PGG~Lvl  231 (296)
T PLN03075        197 DVVFLA-ALVGMDKEEKVKVIEHLGKHMA-PGALLML  231 (296)
T ss_pred             CEEEEe-cccccccccHHHHHHHHHHhcC-CCcEEEE
Confidence            999999 77665   67779999999999 9999998

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=99.34  E-value=1.2e-11  Score=101.72  Aligned_cols=104  Identities=16%  Similarity=0.118  Sum_probs=77.7

Q ss_pred             HHHHHHHHhhC--CCCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhcC------CCceEEeCCCCchhhhhh
Q 037961           21 KELFKLIASKT--PKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKL------PNIRYQLTPTMSITELEQ   92 (262)
Q Consensus        21 ~~~~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~~~~   92 (262)
                      +.+...+....  .++.+|||+|||+|..+..++..+.+++++|+++.+++.++++      .++++..++      +..
T Consensus        64 p~~~~~l~~~l~~~~~~~VLeiG~GsG~~t~~la~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d------~~~  137 (212)
T PRK00312         64 PYMVARMTELLELKPGDRVLEIGTGSGYQAAVLAHLVRRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGD------GWK  137 (212)
T ss_pred             HHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHHhCEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECC------ccc
Confidence            34445555443  4678999999999999998888777999999999999988752      357777765      212


Q ss_pred             ccCCCCceeeEEEccccccCChhHHHHHHHHhhcCCCeEEEEEe
Q 037961           93 NVATQSSVDLVTIASALHWFDLPQFYKQVKWVLKKPSGVIAAWT  136 (262)
Q Consensus        93 ~~~~~~~~D~V~~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~  136 (262)
                      ...+.++||+|++..+++++     .+.+.+.|+ |||.+++..
T Consensus       138 ~~~~~~~fD~I~~~~~~~~~-----~~~l~~~L~-~gG~lv~~~  175 (212)
T PRK00312        138 GWPAYAPFDRILVTAAAPEI-----PRALLEQLK-EGGILVAPV  175 (212)
T ss_pred             CCCcCCCcCEEEEccCchhh-----hHHHHHhcC-CCcEEEEEE
Confidence            11134789999998877655     356789999 999998833

>PLN02232 ubiquinone biosynthesis methyltransferase

Probab=99.34  E-value=3.2e-12  Score=100.41  Aligned_cols=74  Identities=22%  Similarity=0.210  Sum_probs=63.7

Q ss_pred             EEEcCCHHHHHHHhcC---------CCceEEeCCCCchhhhhhccCCCCceeeEEEccccccC-ChhHHHHHHHHhhcCC
Q 037961           59 IATDTSPKQLKFAIKL---------PNIRYQLTPTMSITELEQNVATQSSVDLVTIASALHWF-DLPQFYKQVKWVLKKP  128 (262)
Q Consensus        59 ~~vD~s~~~~~~a~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~~~~-d~~~~l~~~~r~Lk~p  128 (262)
                      +|+|+|++|++.|++.         .+++++++      |++++|+++++||+|++..++||+ |+.+++++++|+|| |
T Consensus         1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~------d~~~lp~~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLk-p   73 (160)
T PLN02232          1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEG------DAIDLPFDDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLK-P   73 (160)
T ss_pred             CeEcCCHHHHHHHHHhhhcccccCCCceEEEEe------chhhCCCCCCCeeEEEecchhhcCCCHHHHHHHHHHHcC-c
Confidence            4899999999998642         24677765      577888889999999999999998 99999999999999 9


Q ss_pred             CeEEEEEecCC
Q 037961          129 SGVIAAWTYTM  139 (262)
Q Consensus       129 gG~l~i~~~~~  139 (262)
                      ||.|++..+..
T Consensus        74 GG~l~i~d~~~   84 (160)
T PLN02232         74 GSRVSILDFNK   84 (160)
T ss_pred             CeEEEEEECCC
Confidence            99999976654

>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated

Probab=99.34  E-value=1e-11  Score=103.15  Aligned_cols=91  Identities=20%  Similarity=0.222  Sum_probs=70.3

Q ss_pred             CCCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhcC-------CCceEEeCCCCchhhhhhccCCCCceeeEE
Q 037961           32 PKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKL-------PNIRYQLTPTMSITELEQNVATQSSVDLVT  104 (262)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~  104 (262)
                      .++.+|||+|||+|.++..+++.+.+|+|+|+|+.|++.|++.       .++.+..++      +   +..+++||+|+
T Consensus        62 ~~~~~vLDvGcG~G~~~~~l~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d------~---~~~~~~fD~v~  132 (230)
T PRK07580         62 LTGLRILDAGCGVGSLSIPLARRGAKVVASDISPQMVEEARERAPEAGLAGNITFEVGD------L---ESLLGRFDTVV  132 (230)
T ss_pred             CCCCEEEEEeCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcC------c---hhccCCcCEEE
Confidence            4567899999999999999999989999999999999999863       246666554      2   12357899999


Q ss_pred             EccccccC-C--hhHHHHHHHHhhcCCCeEE
Q 037961          105 IASALHWF-D--LPQFYKQVKWVLKKPSGVI  132 (262)
Q Consensus       105 ~~~~~~~~-d--~~~~l~~~~r~Lk~pgG~l  132 (262)
                      +..++|++ +  ...+++++.++++ +++.+
T Consensus       133 ~~~~l~~~~~~~~~~~l~~l~~~~~-~~~~i  162 (230)
T PRK07580        133 CLDVLIHYPQEDAARMLAHLASLTR-GSLIF  162 (230)
T ss_pred             EcchhhcCCHHHHHHHHHHHHhhcC-CeEEE
Confidence            99999776 3  3457788888766 44443

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=99.33  E-value=3e-12  Score=108.57  Aligned_cols=108  Identities=19%  Similarity=0.216  Sum_probs=78.5

Q ss_pred             HHHHHhhCCCCCeEEEEcCcccHhHHHHHhhCCe-EEEEcCCHHHHHHHhcC---CCceEEeCCCCchhhhhhccCCCCc
Q 037961           24 FKLIASKTPKRNLAWDVGTRSGQAAASLAQIYQH-VIATDTSPKQLKFAIKL---PNIRYQLTPTMSITELEQNVATQSS   99 (262)
Q Consensus        24 ~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~~~-v~~vD~s~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~~~~~~~   99 (262)
                      +++|..+..++.+|||+|||+|.++...+..|+. ++|+|++|..++.++.+   .++.-....  ........ ...++
T Consensus       153 L~~Le~~~~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~--~~~~~~~~-~~~~~  229 (300)
T COG2264         153 LEALEKLLKKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVELLVQA--KGFLLLEV-PENGP  229 (300)
T ss_pred             HHHHHHhhcCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCchhhhc--ccccchhh-cccCc
Confidence            5666667779999999999999999999999875 99999999999999864   333310000  00011111 23469


Q ss_pred             eeeEEEccccccCChhHHHHHHHHhhcCCCeEEEEEec
Q 037961          100 VDLVTIASALHWFDLPQFYKQVKWVLKKPSGVIAAWTY  137 (262)
Q Consensus       100 ~D~V~~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~  137 (262)
                      ||+|++|--.+  -...+..++.+.|| |||++++.+.
T Consensus       230 ~DvIVANILA~--vl~~La~~~~~~lk-pgg~lIlSGI  264 (300)
T COG2264         230 FDVIVANILAE--VLVELAPDIKRLLK-PGGRLILSGI  264 (300)
T ss_pred             ccEEEehhhHH--HHHHHHHHHHHHcC-CCceEEEEee
Confidence            99999985322  12358899999999 9999999664

>PHA03411 putative methyltransferase; Provisional

Probab=99.33  E-value=2.9e-11  Score=101.45  Aligned_cols=128  Identities=13%  Similarity=0.142  Sum_probs=89.7

Q ss_pred             hHHHHHHHHhhCCCCCeEEEEcCcccHhHHHHHhh--CCeEEEEcCCHHHHHHHhcC-CCceEEeCCCCchhhhhhccCC
Q 037961           20 PKELFKLIASKTPKRNLAWDVGTRSGQAAASLAQI--YQHVIATDTSPKQLKFAIKL-PNIRYQLTPTMSITELEQNVAT   96 (262)
Q Consensus        20 p~~~~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~-~~~~~~~~~~~~~~~~~~~~~~   96 (262)
                      |+.+...+........+|||+|||+|.++..++.+  +.+|+++|+++.|++.+++. ++++++.+|      +..+. .
T Consensus        51 P~~i~~~f~~~~~~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~~v~~v~~D------~~e~~-~  123 (279)
T PHA03411         51 PEGLAWDFTIDAHCTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLPEAEWITSD------VFEFE-S  123 (279)
T ss_pred             CHHHHHHHHhccccCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCcCCEEEECc------hhhhc-c
Confidence            66666443322234568999999999999988775  46999999999999999864 678888765      33333 3


Q ss_pred             CCceeeEEEccccccCC---------------------hhHHHHHHHHhhcCCCeEEEEEecCCCcc-----cHHHHHhh
Q 037961           97 QSSVDLVTIASALHWFD---------------------LPQFYKQVKWVLKKPSGVIAAWTYTMPEI-----NESVGAVF  150 (262)
Q Consensus        97 ~~~~D~V~~~~~~~~~d---------------------~~~~l~~~~r~Lk~pgG~l~i~~~~~~~~-----~~~~~~~~  150 (262)
                      ..+||+|+++..+++..                     ..+.+.....+|+ |+|.+.+...+.+.+     ..+++++.
T Consensus       124 ~~kFDlIIsNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~-p~G~~~~~yss~~~y~~sl~~~~y~~~l  202 (279)
T PHA03411        124 NEKFDVVISNPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIV-PTGSAGFAYSGRPYYDGTMKSNKYLKWS  202 (279)
T ss_pred             cCCCcEEEEcCCccccCchhhhhhhhhccCccccccccHHHHHhhhHheec-CCceEEEEEeccccccccCCHHHHHHHH
Confidence            46899999999998752                     1345677788899 999766532222222     35666776


Q ss_pred             ccccc
Q 037961          151 KPFDT  155 (262)
Q Consensus       151 ~~~~~  155 (262)
                      .+...
T Consensus       203 ~~~g~  207 (279)
T PHA03411        203 KQTGL  207 (279)
T ss_pred             HhcCc
Confidence            66543

>PLN02585 magnesium protoporphyrin IX methyltransferase

Probab=99.32  E-value=1.9e-11  Score=105.78  Aligned_cols=92  Identities=21%  Similarity=0.168  Sum_probs=67.9

Q ss_pred             CCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhcCC-----------CceEEeCCCCchhhhhhccCCCCcee
Q 037961           33 KRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKLP-----------NIRYQLTPTMSITELEQNVATQSSVD  101 (262)
Q Consensus        33 ~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~D  101 (262)
                      ++.+|||+|||+|.++..+++.+.+|+|+|+|+.|++.++++.           ++.+...|      ++++   +++||
T Consensus       144 ~~~~VLDlGcGtG~~a~~la~~g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~D------l~~l---~~~fD  214 (315)
T PLN02585        144 AGVTVCDAGCGTGSLAIPLALEGAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEAND------LESL---SGKYD  214 (315)
T ss_pred             CCCEEEEecCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcc------hhhc---CCCcC
Confidence            4678999999999999999999999999999999999987641           23444433      3332   57899


Q ss_pred             eEEEccccccCChh---HHHHHHHHhhcCCCeEEEEE
Q 037961          102 LVTIASALHWFDLP---QFYKQVKWVLKKPSGVIAAW  135 (262)
Q Consensus       102 ~V~~~~~~~~~d~~---~~l~~~~r~Lk~pgG~l~i~  135 (262)
                      +|+|..+++|+..+   .+++.+.+ +. +||.++.+
T Consensus       215 ~Vv~~~vL~H~p~~~~~~ll~~l~~-l~-~g~liIs~  249 (315)
T PLN02585        215 TVTCLDVLIHYPQDKADGMIAHLAS-LA-EKRLIISF  249 (315)
T ss_pred             EEEEcCEEEecCHHHHHHHHHHHHh-hc-CCEEEEEe
Confidence            99999998777322   35566654 45 56665544

>PTZ00146 fibrillarin; Provisional

Probab=99.32  E-value=2.1e-11  Score=103.34  Aligned_cols=117  Identities=19%  Similarity=0.147  Sum_probs=82.3

Q ss_pred             HHhhCCCChHHHHHHHHhh-----CCCCCeEEEEcCcccHhHHHHHhhC---CeEEEEcCCHH----HHHHHhcCCCceE
Q 037961           12 YAVARPNYPKELFKLIASK-----TPKRNLAWDVGTRSGQAAASLAQIY---QHVIATDTSPK----QLKFAIKLPNIRY   79 (262)
Q Consensus        12 Y~~~rp~yp~~~~~~l~~~-----~~~~~~vlDvGcG~G~~~~~l~~~~---~~v~~vD~s~~----~~~~a~~~~~~~~   79 (262)
                      |..+-|.. .+|...|+.-     +.++.+|||+|||+|.++..++...   ..|+++|+++.    |++.++..+++..
T Consensus       107 yR~w~p~r-SKlaa~i~~g~~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~  185 (293)
T PTZ00146        107 YRVWNPFR-SKLAAAIIGGVANIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVP  185 (293)
T ss_pred             eeeeCCcc-cHHHHHHHCCcceeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCCEE
Confidence            55554533 5666555433     2577899999999999999999873   47999999986    5566666678888


Q ss_pred             EeCCCCchhhhhhccCCCCceeeEEEccccccCChhHHHHHHHHhhcCCCeEEEE
Q 037961           80 QLTPTMSITELEQNVATQSSVDLVTIASALHWFDLPQFYKQVKWVLKKPSGVIAA  134 (262)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i  134 (262)
                      +..|..   +........++||+|++..+..+ +...++.++.++|| |||.|+|
T Consensus       186 I~~Da~---~p~~y~~~~~~vDvV~~Dva~pd-q~~il~~na~r~LK-pGG~~vI  235 (293)
T PTZ00146        186 IIEDAR---YPQKYRMLVPMVDVIFADVAQPD-QARIVALNAQYFLK-NGGHFII  235 (293)
T ss_pred             EECCcc---ChhhhhcccCCCCEEEEeCCCcc-hHHHHHHHHHHhcc-CCCEEEE
Confidence            887610   01112223457999999875211 33356778999999 9999998

>PRK00811 spermidine synthase; Provisional

Probab=99.31  E-value=3.3e-11  Score=103.25  Aligned_cols=100  Identities=16%  Similarity=0.244  Sum_probs=76.9

Q ss_pred             hCCCCCeEEEEcCcccHhHHHHHhh--CCeEEEEcCCHHHHHHHhcC-----------CCceEEeCCCCchhhhhh-ccC
Q 037961           30 KTPKRNLAWDVGTRSGQAAASLAQI--YQHVIATDTSPKQLKFAIKL-----------PNIRYQLTPTMSITELEQ-NVA   95 (262)
Q Consensus        30 ~~~~~~~vlDvGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~-----------~~~~~~~~~~~~~~~~~~-~~~   95 (262)
                      ..+...+||++|||+|..++.++++  ..+|+++|+++.+++.|++.           ++++++.+|      +.. +.-
T Consensus        73 ~~~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~D------a~~~l~~  146 (283)
T PRK00811         73 AHPNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGD------GIKFVAE  146 (283)
T ss_pred             hCCCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECc------hHHHHhh
Confidence            3456778999999999999999886  35899999999999999862           356666665      322 222


Q ss_pred             CCCceeeEEEccccccCC-----hhHHHHHHHHhhcCCCeEEEEEe
Q 037961           96 TQSSVDLVTIASALHWFD-----LPQFYKQVKWVLKKPSGVIAAWT  136 (262)
Q Consensus        96 ~~~~~D~V~~~~~~~~~d-----~~~~l~~~~r~Lk~pgG~l~i~~  136 (262)
                      ..++||+|++...-++..     ...+++.+.+.|+ |||+++++.
T Consensus       147 ~~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~-~gGvlv~~~  191 (283)
T PRK00811        147 TENSFDVIIVDSTDPVGPAEGLFTKEFYENCKRALK-EDGIFVAQS  191 (283)
T ss_pred             CCCcccEEEECCCCCCCchhhhhHHHHHHHHHHhcC-CCcEEEEeC
Confidence            467899999976555432     2568899999999 999999864

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific

Probab=99.30  E-value=3.2e-11  Score=101.45  Aligned_cols=107  Identities=25%  Similarity=0.239  Sum_probs=80.3

Q ss_pred             HHHHHHHHhhCC-CCCeEEEEcCcccHhHHHHHhh--CCeEEEEcCCHHHHHHHhcC------CCceEEeCCCCchhhhh
Q 037961           21 KELFKLIASKTP-KRNLAWDVGTRSGQAAASLAQI--YQHVIATDTSPKQLKFAIKL------PNIRYQLTPTMSITELE   91 (262)
Q Consensus        21 ~~~~~~l~~~~~-~~~~vlDvGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~~~   91 (262)
                      ..+++.+....+ ...+|||+|||+|..+..++..  ..+++|+|+++.+++.+++.      .++.+..++      +.
T Consensus        74 ~~l~~~~l~~~~~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d------~~  147 (251)
T TIGR03534        74 EELVEAALERLKKGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSD------WF  147 (251)
T ss_pred             HHHHHHHHHhcccCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECc------hh
Confidence            455666666554 4458999999999999999986  56899999999999988752      356777665      22


Q ss_pred             hccCCCCceeeEEEccccccC-C--------------------------hhHHHHHHHHhhcCCCeEEEEE
Q 037961           92 QNVATQSSVDLVTIASALHWF-D--------------------------LPQFYKQVKWVLKKPSGVIAAW  135 (262)
Q Consensus        92 ~~~~~~~~~D~V~~~~~~~~~-d--------------------------~~~~l~~~~r~Lk~pgG~l~i~  135 (262)
                      . ++++++||+|+++..++.. +                          ...+++++.++|+ |||.+++.
T Consensus       148 ~-~~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~-~gG~~~~~  216 (251)
T TIGR03534       148 E-PLPGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLK-PGGWLLLE  216 (251)
T ss_pred             c-cCcCCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcc-cCCEEEEE
Confidence            2 2356789999997665431 1                          1357889999999 99999884

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=99.29  E-value=5.3e-11  Score=96.79  Aligned_cols=107  Identities=19%  Similarity=0.191  Sum_probs=77.9

Q ss_pred             HHHHHHHHhhC--CCCCeEEEEcCcccHhHHHHHhh---CCeEEEEcCCHHHHHHHhcC-------CCceEEeCCCCchh
Q 037961           21 KELFKLIASKT--PKRNLAWDVGTRSGQAAASLAQI---YQHVIATDTSPKQLKFAIKL-------PNIRYQLTPTMSIT   88 (262)
Q Consensus        21 ~~~~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~   88 (262)
                      +++....+.+.  .++.+|||+|||+|.++..++..   ..+|+++|+++.|++.++++       .++.+..++     
T Consensus        26 ~~~r~~~l~~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d-----  100 (198)
T PRK00377         26 EEIRALALSKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGE-----  100 (198)
T ss_pred             HHHHHHHHHHcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEec-----
Confidence            34433333443  47789999999999999998764   36899999999999988642       356666654     


Q ss_pred             hhhh-ccCCCCceeeEEEccccccCChhHHHHHHHHhhcCCCeEEEEEe
Q 037961           89 ELEQ-NVATQSSVDLVTIASALHWFDLPQFYKQVKWVLKKPSGVIAAWT  136 (262)
Q Consensus        89 ~~~~-~~~~~~~~D~V~~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~  136 (262)
                       +.+ ++..+++||.|++...  ..+...+++++.++|+ |||.+++..
T Consensus       101 -~~~~l~~~~~~~D~V~~~~~--~~~~~~~l~~~~~~Lk-pgG~lv~~~  145 (198)
T PRK00377        101 -APEILFTINEKFDRIFIGGG--SEKLKEIISASWEIIK-KGGRIVIDA  145 (198)
T ss_pred             -hhhhHhhcCCCCCEEEECCC--cccHHHHHHHHHHHcC-CCcEEEEEe
Confidence             222 2222468999998642  2367889999999999 999998733

>PRK07402 precorrin-6B methylase; Provisional

Probab=99.28  E-value=8.4e-11  Score=95.46  Aligned_cols=112  Identities=19%  Similarity=0.256  Sum_probs=80.1

Q ss_pred             CCChHHHHHHHHhhCC--CCCeEEEEcCcccHhHHHHHhh--CCeEEEEcCCHHHHHHHhcC------CCceEEeCCCCc
Q 037961           17 PNYPKELFKLIASKTP--KRNLAWDVGTRSGQAAASLAQI--YQHVIATDTSPKQLKFAIKL------PNIRYQLTPTMS   86 (262)
Q Consensus        17 p~yp~~~~~~l~~~~~--~~~~vlDvGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~   86 (262)
                      |.-+.++...+...+.  ++.+|||+|||+|.++..++..  +.+|+++|+|+.|++.++++      .+++++.++   
T Consensus        22 p~t~~~v~~~l~~~l~~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d---   98 (196)
T PRK07402         22 PLTKREVRLLLISQLRLEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGS---   98 (196)
T ss_pred             CCCHHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECc---
Confidence            4455666555666654  6789999999999999998864  47999999999999988752      467777765   


Q ss_pred             hhhhhh-ccCCCCceeeEEEccccccCChhHHHHHHHHhhcCCCeEEEEEecC
Q 037961           87 ITELEQ-NVATQSSVDLVTIASALHWFDLPQFYKQVKWVLKKPSGVIAAWTYT  138 (262)
Q Consensus        87 ~~~~~~-~~~~~~~~D~V~~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~~  138 (262)
                         +.+ +......+|.|+....   .+...+++++.++|+ |||.+++....
T Consensus        99 ---~~~~~~~~~~~~d~v~~~~~---~~~~~~l~~~~~~Lk-pgG~li~~~~~  144 (196)
T PRK07402         99 ---APECLAQLAPAPDRVCIEGG---RPIKEILQAVWQYLK-PGGRLVATASS  144 (196)
T ss_pred             ---hHHHHhhCCCCCCEEEEECC---cCHHHHHHHHHHhcC-CCeEEEEEeec
Confidence               211 1111223566654321   256789999999999 99999986544

>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU

Probab=99.28  E-value=5.2e-11  Score=103.33  Aligned_cols=96  Identities=13%  Similarity=0.108  Sum_probs=75.0

Q ss_pred             CCCCeEEEEcCcccHhHHHHHhhC--CeEEEEcCCHHHHHHHhcC-------CCceEEeCCCCchhhhhhccCCCCceee
Q 037961           32 PKRNLAWDVGTRSGQAAASLAQIY--QHVIATDTSPKQLKFAIKL-------PNIRYQLTPTMSITELEQNVATQSSVDL  102 (262)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~D~  102 (262)
                      .+..+|||||||+|.++..+++++  .+++++|. +.+++.++++       .+++++.+|      +...+++  .+|+
T Consensus       148 ~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d------~~~~~~~--~~D~  218 (306)
T TIGR02716       148 DGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVD------IYKESYP--EADA  218 (306)
T ss_pred             CCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecC------ccCCCCC--CCCE
Confidence            466899999999999999999874  57999998 7899888642       356777765      3322333  3699


Q ss_pred             EEEccccccCCh---hHHHHHHHHhhcCCCeEEEEEec
Q 037961          103 VTIASALHWFDL---PQFYKQVKWVLKKPSGVIAAWTY  137 (262)
Q Consensus       103 V~~~~~~~~~d~---~~~l~~~~r~Lk~pgG~l~i~~~  137 (262)
                      |++...+|..+.   .+++++++++|+ |||+|++...
T Consensus       219 v~~~~~lh~~~~~~~~~il~~~~~~L~-pgG~l~i~d~  255 (306)
T TIGR02716       219 VLFCRILYSANEQLSTIMCKKAFDAMR-SGGRLLILDM  255 (306)
T ss_pred             EEeEhhhhcCChHHHHHHHHHHHHhcC-CCCEEEEEEe
Confidence            999999987633   358999999999 9999998653

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.

>PRK14968 putative methyltransferase; Provisional

Probab=99.28  E-value=4.1e-11  Score=96.31  Aligned_cols=97  Identities=23%  Similarity=0.224  Sum_probs=74.4

Q ss_pred             CCCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhcC------CC--ceEEeCCCCchhhhhhccCCCCceeeE
Q 037961           32 PKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKL------PN--IRYQLTPTMSITELEQNVATQSSVDLV  103 (262)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~------~~--~~~~~~~~~~~~~~~~~~~~~~~~D~V  103 (262)
                      .++..|||+|||+|..+..++..+.+++++|+|+.+++.+++.      .+  +.+..++      ..+ ++.+.+||+|
T Consensus        22 ~~~~~vLd~G~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d------~~~-~~~~~~~d~v   94 (188)
T PRK14968         22 KKGDRVLEVGTGSGIVAIVAAKNGKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSD------LFE-PFRGDKFDVI   94 (188)
T ss_pred             cCCCEEEEEccccCHHHHHHHhhcceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEecc------ccc-cccccCceEE
Confidence            4667899999999999999999999999999999999988642      22  6666655      111 1244589999


Q ss_pred             EEccccccC----------------------ChhHHHHHHHHhhcCCCeEEEEEe
Q 037961          104 TIASALHWF----------------------DLPQFYKQVKWVLKKPSGVIAAWT  136 (262)
Q Consensus       104 ~~~~~~~~~----------------------d~~~~l~~~~r~Lk~pgG~l~i~~  136 (262)
                      +++..+...                      ....+++++.++|| |||.+++..
T Consensus        95 i~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk-~gG~~~~~~  148 (188)
T PRK14968         95 LFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLK-PGGRILLLQ  148 (188)
T ss_pred             EECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcC-CCeEEEEEE
Confidence            987665431                      13457999999999 999988754

>PRK01581 speE spermidine synthase; Validated

Probab=99.27  E-value=8e-11  Score=102.45  Aligned_cols=112  Identities=15%  Similarity=0.162  Sum_probs=83.0

Q ss_pred             ChHHHHHHHHhhCCCCCeEEEEcCcccHhHHHHHhhC--CeEEEEcCCHHHHHHHhcC-------------CCceEEeCC
Q 037961           19 YPKELFKLIASKTPKRNLAWDVGTRSGQAAASLAQIY--QHVIATDTSPKQLKFAIKL-------------PNIRYQLTP   83 (262)
Q Consensus        19 yp~~~~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~-------------~~~~~~~~~   83 (262)
                      |.+.+..-.+...+...+||++|||+|..++.++++.  .+|++||+++.|++.|++.             +++++..+|
T Consensus       136 YHE~Lvhp~m~~h~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~D  215 (374)
T PRK01581        136 YHEALVHPIMSKVIDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCD  215 (374)
T ss_pred             HHHHHHHHHHHhCCCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECc
Confidence            5566666555556677899999999999999988864  6899999999999999852             456666655


Q ss_pred             CCchhhhhh-ccCCCCceeeEEEcccccc------CChhHHHHHHHHhhcCCCeEEEEEec
Q 037961           84 TMSITELEQ-NVATQSSVDLVTIASALHW------FDLPQFYKQVKWVLKKPSGVIAAWTY  137 (262)
Q Consensus        84 ~~~~~~~~~-~~~~~~~~D~V~~~~~~~~------~d~~~~l~~~~r~Lk~pgG~l~i~~~  137 (262)
                            +.. +.-..++||+|++...-..      +-...+++.+.+.|+ |||+++++..
T Consensus       216 ------a~~fL~~~~~~YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~Lk-PgGV~V~Qs~  269 (374)
T PRK01581        216 ------AKEFLSSPSSLYDVIIIDFPDPATELLSTLYTSELFARIATFLT-EDGAFVCQSN  269 (374)
T ss_pred             ------HHHHHHhcCCCccEEEEcCCCccccchhhhhHHHHHHHHHHhcC-CCcEEEEecC
Confidence                  322 2234568999998843211      112558999999999 9999998653

>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

Probab=99.26  E-value=6.7e-11  Score=84.49  Aligned_cols=93  Identities=29%  Similarity=0.394  Sum_probs=75.6

Q ss_pred             eEEEEcCcccHhHHHHHh-hCCeEEEEcCCHHHHHHHhc------CCCceEEeCCCCchhhhhhcc-CCCCceeeEEEcc
Q 037961           36 LAWDVGTRSGQAAASLAQ-IYQHVIATDTSPKQLKFAIK------LPNIRYQLTPTMSITELEQNV-ATQSSVDLVTIAS  107 (262)
Q Consensus        36 ~vlDvGcG~G~~~~~l~~-~~~~v~~vD~s~~~~~~a~~------~~~~~~~~~~~~~~~~~~~~~-~~~~~~D~V~~~~  107 (262)
                      +++|+|||+|..+..++. ...+++++|+++.+++.+++      ...+.+...+      +.+.. ...+++|+|+++.
T Consensus         1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~d~i~~~~   74 (107)
T cd02440           1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLADNVEVLKGD------AEELPPEADESFDVIISDP   74 (107)
T ss_pred             CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcC------hhhhccccCCceEEEEEcc
Confidence            479999999999999987 56799999999999988872      2456666655      22322 2467899999999


Q ss_pred             cccc-C-ChhHHHHHHHHhhcCCCeEEEEE
Q 037961          108 ALHW-F-DLPQFYKQVKWVLKKPSGVIAAW  135 (262)
Q Consensus       108 ~~~~-~-d~~~~l~~~~r~Lk~pgG~l~i~  135 (262)
                      .+++ . +...+++.+.+.|+ |||.+++.
T Consensus        75 ~~~~~~~~~~~~l~~~~~~l~-~~g~~~~~  103 (107)
T cd02440          75 PLHHLVEDLARFLEEARRLLK-PGGVLVLT  103 (107)
T ss_pred             ceeehhhHHHHHHHHHHHHcC-CCCEEEEE
Confidence            9998 5 78889999999999 99999874

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=99.23  E-value=1.1e-11  Score=106.04  Aligned_cols=106  Identities=22%  Similarity=0.235  Sum_probs=76.1

Q ss_pred             HHHHHHhhCCCCCeEEEEcCcccHhHHHHHhhCC-eEEEEcCCHHHHHHHhcC---CCc--eEEeCCCCchhhhhhccCC
Q 037961           23 LFKLIASKTPKRNLAWDVGTRSGQAAASLAQIYQ-HVIATDTSPKQLKFAIKL---PNI--RYQLTPTMSITELEQNVAT   96 (262)
Q Consensus        23 ~~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~---~~~--~~~~~~~~~~~~~~~~~~~   96 (262)
                      -++.|..+..++.+|||+|||||.++...+..|+ +|+|+|++|..++.|+++   .++  .+....      ..  ...
T Consensus       151 cl~~l~~~~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~~------~~--~~~  222 (295)
T PF06325_consen  151 CLELLEKYVKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVEDRIEVSL------SE--DLV  222 (295)
T ss_dssp             HHHHHHHHSSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEESC------TS--CTC
T ss_pred             HHHHHHHhccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEEE------ec--ccc
Confidence            3666777778889999999999999999999987 699999999999999864   111  221111      11  123


Q ss_pred             CCceeeEEEccccccCChhHHHHHHHHhhcCCCeEEEEEecCC
Q 037961           97 QSSVDLVTIASALHWFDLPQFYKQVKWVLKKPSGVIAAWTYTM  139 (262)
Q Consensus        97 ~~~~D~V~~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~~~  139 (262)
                      .++||+|++|-..+-  ....+..+.++|+ |||.|++.+.-.
T Consensus       223 ~~~~dlvvANI~~~v--L~~l~~~~~~~l~-~~G~lIlSGIl~  262 (295)
T PF06325_consen  223 EGKFDLVVANILADV--LLELAPDIASLLK-PGGYLILSGILE  262 (295)
T ss_dssp             CS-EEEEEEES-HHH--HHHHHHHCHHHEE-EEEEEEEEEEEG
T ss_pred             cccCCEEEECCCHHH--HHHHHHHHHHhhC-CCCEEEEccccH
Confidence            589999999855432  2347778899999 999999966544

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific

Probab=99.23  E-value=1.5e-10  Score=99.22  Aligned_cols=94  Identities=20%  Similarity=0.140  Sum_probs=70.9

Q ss_pred             CCCeEEEEcCcccHhHHHHHhh--CCeEEEEcCCHHHHHHHhcC-------CCceEEeCCCCchhhhhhccCCCCceeeE
Q 037961           33 KRNLAWDVGTRSGQAAASLAQI--YQHVIATDTSPKQLKFAIKL-------PNIRYQLTPTMSITELEQNVATQSSVDLV  103 (262)
Q Consensus        33 ~~~~vlDvGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~D~V  103 (262)
                      +..+|||+|||+|.++..++..  ..+|+|+|+|+.+++.|+++       .++.+..+|      +.+ ++++++||+|
T Consensus       121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D------~~~-~~~~~~fD~I  193 (284)
T TIGR03533       121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSD------LFA-ALPGRKYDLI  193 (284)
T ss_pred             CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECc------hhh-ccCCCCccEE
Confidence            4568999999999999999986  46999999999999998853       246777765      211 1245689999


Q ss_pred             EEcccccc------C------C--------------hhHHHHHHHHhhcCCCeEEEE
Q 037961          104 TIASALHW------F------D--------------LPQFYKQVKWVLKKPSGVIAA  134 (262)
Q Consensus       104 ~~~~~~~~------~------d--------------~~~~l~~~~r~Lk~pgG~l~i  134 (262)
                      +++....-      +      +              ...+++++.++|+ |||++++
T Consensus       194 v~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~-~gG~l~~  249 (284)
T TIGR03533       194 VSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLN-ENGVLVV  249 (284)
T ss_pred             EECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcC-CCCEEEE
Confidence            99743210      0      1              1446889999999 9999987

Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.

>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes

Probab=99.22  E-value=1.4e-10  Score=95.79  Aligned_cols=92  Identities=21%  Similarity=0.275  Sum_probs=78.4

Q ss_pred             CCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhcCCCceEEeCCCCchhhhhhccCCCCceeeEEEccccccC
Q 037961           33 KRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKLPNIRYQLTPTMSITELEQNVATQSSVDLVTIASALHWF  112 (262)
Q Consensus        33 ~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~~~~  112 (262)
                      ...++||||+|.|..|..+++.+.+|+++|.|+.|....+++ +.+++..+     +   +.-.+.+||+|.|.+.+--.
T Consensus        94 ~~~~lLDlGAGdG~VT~~l~~~f~~v~aTE~S~~Mr~rL~~k-g~~vl~~~-----~---w~~~~~~fDvIscLNvLDRc  164 (265)
T PF05219_consen   94 KDKSLLDLGAGDGEVTERLAPLFKEVYATEASPPMRWRLSKK-GFTVLDID-----D---WQQTDFKFDVISCLNVLDRC  164 (265)
T ss_pred             cCCceEEecCCCcHHHHHHHhhcceEEeecCCHHHHHHHHhC-CCeEEehh-----h---hhccCCceEEEeehhhhhcc
Confidence            456799999999999999999999999999999998888764 66666443     2   22235689999999999888


Q ss_pred             -ChhHHHHHHHHhhcCCCeEEEE
Q 037961          113 -DLPQFYKQVKWVLKKPSGVIAA  134 (262)
Q Consensus       113 -d~~~~l~~~~r~Lk~pgG~l~i  134 (262)
                       +|..+++++++.|+ |+|.+++
T Consensus       165 ~~P~~LL~~i~~~l~-p~G~lil  186 (265)
T PF05219_consen  165 DRPLTLLRDIRRALK-PNGRLIL  186 (265)
T ss_pred             CCHHHHHHHHHHHhC-CCCEEEE
Confidence             89999999999999 9999987

The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.

>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional

Probab=99.22  E-value=1.3e-10  Score=103.09  Aligned_cols=107  Identities=21%  Similarity=0.276  Sum_probs=78.0

Q ss_pred             HHHHHHHHhhCCCCCeEEEEcCcccHhHHHHHhh--CCeEEEEcCCHHHHHHHhcC-----CCceEEeCCCCchhhhhhc
Q 037961           21 KELFKLIASKTPKRNLAWDVGTRSGQAAASLAQI--YQHVIATDTSPKQLKFAIKL-----PNIRYQLTPTMSITELEQN   93 (262)
Q Consensus        21 ~~~~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~-----~~~~~~~~~~~~~~~~~~~   93 (262)
                      +.+++.+....+++.+|||+|||+|..+..++..  ..+|+|+|+|+.|++.|+++     .++.+..+|      +.+.
T Consensus       239 E~LVe~aL~~l~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gD------l~e~  312 (423)
T PRK14966        239 EHLVEAVLARLPENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGARVEFAHGS------WFDT  312 (423)
T ss_pred             HHHHHHhhhccCCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcc------hhcc
Confidence            5667777766666678999999999999998864  57899999999999999863     256777765      2111


Q ss_pred             cC-CCCceeeEEEcccccc-------------------C---C----hhHHHHHHHHhhcCCCeEEEE
Q 037961           94 VA-TQSSVDLVTIASALHW-------------------F---D----LPQFYKQVKWVLKKPSGVIAA  134 (262)
Q Consensus        94 ~~-~~~~~D~V~~~~~~~~-------------------~---d----~~~~l~~~~r~Lk~pgG~l~i  134 (262)
                      .+ ..++||+|+|+....-                   .   |    ...+++.+.+.|+ |||.+++
T Consensus       313 ~l~~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~Lk-pgG~lil  379 (423)
T PRK14966        313 DMPSEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLA-EGGFLLL  379 (423)
T ss_pred             ccccCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcC-CCcEEEE
Confidence            11 2457999999775311                   0   0    1245667778999 9999876

>PRK13256 thiopurine S-methyltransferase; Reviewed

Probab=99.22  E-value=3.3e-10  Score=93.19  Aligned_cols=111  Identities=11%  Similarity=-0.052  Sum_probs=84.2

Q ss_pred             hHHHHHHHHhhC-CCCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhcC------------------CCceEE
Q 037961           20 PKELFKLIASKT-PKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKL------------------PNIRYQ   80 (262)
Q Consensus        20 p~~~~~~l~~~~-~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~------------------~~~~~~   80 (262)
                      .+-+.+++.... +++.+||+.|||.|.-...|+.+|.+|+|+|+|+..++.+.+.                  .++++.
T Consensus        29 np~L~~~~~~l~~~~~~rvLvPgCGkg~D~~~LA~~G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~  108 (226)
T PRK13256         29 NEFLVKHFSKLNINDSSVCLIPMCGCSIDMLFFLSKGVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIY  108 (226)
T ss_pred             CHHHHHHHHhcCCCCCCeEEEeCCCChHHHHHHHhCCCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEE
Confidence            344456654443 3567999999999999999999999999999999999987431                  256666


Q ss_pred             eCCCCchhhhhhccC---CCCceeeEEEccccccCCh---hHHHHHHHHhhcCCCeEEEEEec
Q 037961           81 LTPTMSITELEQNVA---TQSSVDLVTIASALHWFDL---PQFYKQVKWVLKKPSGVIAAWTY  137 (262)
Q Consensus        81 ~~~~~~~~~~~~~~~---~~~~~D~V~~~~~~~~~d~---~~~l~~~~r~Lk~pgG~l~i~~~  137 (262)
                      ++|      +-+++.   ..++||+|+-..+++.+++   .+..+.+.++|+ |||.+++.+.
T Consensus       109 ~gD------~f~l~~~~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~-pgg~llll~~  164 (226)
T PRK13256        109 VAD------IFNLPKIANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCS-NNTQILLLVM  164 (226)
T ss_pred             Ecc------CcCCCccccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhC-CCcEEEEEEE
Confidence            665      333321   1368999998888888843   448999999999 9999887443

>PRK04457 spermidine synthase; Provisional

Probab=99.22  E-value=1.7e-10  Score=97.71  Aligned_cols=95  Identities=13%  Similarity=0.209  Sum_probs=73.2

Q ss_pred             CCCCeEEEEcCcccHhHHHHHhh--CCeEEEEcCCHHHHHHHhcC-------CCceEEeCCCCchhhhhh-ccCCCCcee
Q 037961           32 PKRNLAWDVGTRSGQAAASLAQI--YQHVIATDTSPKQLKFAIKL-------PNIRYQLTPTMSITELEQ-NVATQSSVD  101 (262)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~~~~-~~~~~~~~D  101 (262)
                      ++..+|||||||+|.++..++..  ..+++++|+++.+++.|++.       ++++++.+|      +.+ +.-..++||
T Consensus        65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~D------a~~~l~~~~~~yD  138 (262)
T PRK04457         65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEAD------GAEYIAVHRHSTD  138 (262)
T ss_pred             CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECC------HHHHHHhCCCCCC
Confidence            45678999999999999999876  46899999999999999863       457777776      211 111246899


Q ss_pred             eEEEcccccc------CChhHHHHHHHHhhcCCCeEEEE
Q 037961          102 LVTIASALHW------FDLPQFYKQVKWVLKKPSGVIAA  134 (262)
Q Consensus       102 ~V~~~~~~~~------~d~~~~l~~~~r~Lk~pgG~l~i  134 (262)
                      +|++.. ++.      +....+++++.++|+ |||++++
T Consensus       139 ~I~~D~-~~~~~~~~~l~t~efl~~~~~~L~-pgGvlvi  175 (262)
T PRK04457        139 VILVDG-FDGEGIIDALCTQPFFDDCRNALS-SDGIFVV  175 (262)
T ss_pred             EEEEeC-CCCCCCccccCcHHHHHHHHHhcC-CCcEEEE
Confidence            999752 221      234689999999999 9999998

>COG4123 Predicted O-methyltransferase [General function prediction only]

Probab=99.21  E-value=8.7e-11  Score=97.21  Aligned_cols=98  Identities=20%  Similarity=0.270  Sum_probs=78.4

Q ss_pred             CCCCeEEEEcCcccHhHHHHHhh-C-CeEEEEcCCHHHHHHHhcC-------CCceEEeCCCCchhhhhhcc--CCCCce
Q 037961           32 PKRNLAWDVGTRSGQAAASLAQI-Y-QHVIATDTSPKQLKFAIKL-------PNIRYQLTPTMSITELEQNV--ATQSSV  100 (262)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~-~-~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~~~~~~--~~~~~~  100 (262)
                      +...+|||+|||+|.++..++++ . +++++||+++.|.+.|++.       .++++.++|      +.++.  ....+|
T Consensus        43 ~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~D------i~~~~~~~~~~~f  116 (248)
T COG4123          43 PKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEAD------IKEFLKALVFASF  116 (248)
T ss_pred             ccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhh------HHHhhhccccccc
Confidence            34788999999999999999987 3 7999999999999999863       567777765      33332  234579


Q ss_pred             eeEEEcccccc----------------C---ChhHHHHHHHHhhcCCCeEEEEEe
Q 037961          101 DLVTIASALHW----------------F---DLPQFYKQVKWVLKKPSGVIAAWT  136 (262)
Q Consensus       101 D~V~~~~~~~~----------------~---d~~~~l~~~~r~Lk~pgG~l~i~~  136 (262)
                      |+|+||..++-                .   +.+.+++.+.++|| |||.+++..
T Consensus       117 D~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk-~~G~l~~V~  170 (248)
T COG4123         117 DLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLK-PGGRLAFVH  170 (248)
T ss_pred             CEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHcc-CCCEEEEEe
Confidence            99999876652                1   56778999999999 999999854

>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.21  E-value=1.7e-10  Score=99.92  Aligned_cols=92  Identities=21%  Similarity=0.124  Sum_probs=70.0

Q ss_pred             CeEEEEcCcccHhHHHHHhh--CCeEEEEcCCHHHHHHHhcC-------CCceEEeCCCCchhhhhhccCCCCceeeEEE
Q 037961           35 NLAWDVGTRSGQAAASLAQI--YQHVIATDTSPKQLKFAIKL-------PNIRYQLTPTMSITELEQNVATQSSVDLVTI  105 (262)
Q Consensus        35 ~~vlDvGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~  105 (262)
                      .+|||+|||+|.++..++..  ..+|+++|+|+.+++.|+++       .++.+..+|      +.+ .+++++||+|++
T Consensus       135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D------~~~-~l~~~~fDlIvs  207 (307)
T PRK11805        135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESD------LFA-ALPGRRYDLIVS  207 (307)
T ss_pred             CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECc------hhh-hCCCCCccEEEE
Confidence            68999999999999999886  46899999999999998853       247777765      221 124568999999


Q ss_pred             cccc-------------ccC-------------ChhHHHHHHHHhhcCCCeEEEE
Q 037961          106 ASAL-------------HWF-------------DLPQFYKQVKWVLKKPSGVIAA  134 (262)
Q Consensus       106 ~~~~-------------~~~-------------d~~~~l~~~~r~Lk~pgG~l~i  134 (262)
                      +...             ++-             ....+++++.++|+ |||.+++
T Consensus       208 NPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~-pgG~l~~  261 (307)
T PRK11805        208 NPPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLT-EDGVLVV  261 (307)
T ss_pred             CCCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcC-CCCEEEE
Confidence            7422             110             01357889999999 9999988

>smart00650 rADc Ribosomal RNA adenine dimethylases

Probab=99.20  E-value=7.5e-11  Score=93.51  Aligned_cols=94  Identities=10%  Similarity=-0.027  Sum_probs=71.1

Q ss_pred             CCCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhcC----CCceEEeCCCCchhhhhhccCCCCceeeEEEcc
Q 037961           32 PKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKL----PNIRYQLTPTMSITELEQNVATQSSVDLVTIAS  107 (262)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~  107 (262)
                      .++..|||+|||+|.++..+++++.+++++|+++.+++.++++    .+++++.+|      +..+++++.+||.|+++.
T Consensus        12 ~~~~~vLEiG~G~G~lt~~l~~~~~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D------~~~~~~~~~~~d~vi~n~   85 (169)
T smart00650       12 RPGDTVLEIGPGKGALTEELLERAARVTAIEIDPRLAPRLREKFAAADNLTVIHGD------ALKFDLPKLQPYKVVGNL   85 (169)
T ss_pred             CCcCEEEEECCCccHHHHHHHhcCCeEEEEECCHHHHHHHHHHhccCCCEEEEECc------hhcCCccccCCCEEEECC
Confidence            3567899999999999999999988999999999999998764    357777654      556666666799999998


Q ss_pred             ccccCChhHHHHHHHHh--hcCCCeEEEE
Q 037961          108 ALHWFDLPQFYKQVKWV--LKKPSGVIAA  134 (262)
Q Consensus       108 ~~~~~d~~~~l~~~~r~--Lk~pgG~l~i  134 (262)
                      .+|..  ...+..+.+-  +. ++|.|++
T Consensus        86 Py~~~--~~~i~~~l~~~~~~-~~~~l~~  111 (169)
T smart00650       86 PYNIS--TPILFKLLEEPPAF-RDAVLMV  111 (169)
T ss_pred             CcccH--HHHHHHHHhcCCCc-ceEEEEE
Confidence            87753  2334444332  34 5777766

>PHA03412 putative methyltransferase; Provisional

Probab=99.20  E-value=2.8e-10  Score=93.53  Aligned_cols=106  Identities=8%  Similarity=0.100  Sum_probs=77.6

Q ss_pred             hHHHHHHHHhhCCCCCeEEEEcCcccHhHHHHHhh-----CCeEEEEcCCHHHHHHHhcC-CCceEEeCCCCchhhhhhc
Q 037961           20 PKELFKLIASKTPKRNLAWDVGTRSGQAAASLAQI-----YQHVIATDTSPKQLKFAIKL-PNIRYQLTPTMSITELEQN   93 (262)
Q Consensus        20 p~~~~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~-----~~~v~~vD~s~~~~~~a~~~-~~~~~~~~~~~~~~~~~~~   93 (262)
                      |..+...+.-....+.+|||+|||+|.++..++..     ..+|+++|+++.+++.|+++ +++.+..+|      +...
T Consensus        36 P~~iAr~~~i~~~~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~~~~~~~~D------~~~~  109 (241)
T PHA03412         36 PIGLARDFTIDACTSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVPEATWINAD------ALTT  109 (241)
T ss_pred             CHHHHHHHHHhccCCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhccCCEEEEcc------hhcc
Confidence            56666665433334678999999999999988764     35899999999999999865 567777765      3333


Q ss_pred             cCCCCceeeEEEccccccC---C----------hhHHHHHHHHhhcCCCeEEEE
Q 037961           94 VATQSSVDLVTIASALHWF---D----------LPQFYKQVKWVLKKPSGVIAA  134 (262)
Q Consensus        94 ~~~~~~~D~V~~~~~~~~~---d----------~~~~l~~~~r~Lk~pgG~l~i  134 (262)
                      .+ +++||+|++|..++-.   +          ...+++.+.++++ ||+. ++
T Consensus       110 ~~-~~~FDlIIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~-~G~~-IL  160 (241)
T PHA03412        110 EF-DTLFDMAISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIAR-QGTF-II  160 (241)
T ss_pred             cc-cCCccEEEECCCCCCccccccCCcccccHHHHHHHHHHHHHcC-CCEE-Ee
Confidence            32 5689999999888722   1          3347888889776 6664 44

>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

Probab=99.19  E-value=4.2e-11  Score=101.13  Aligned_cols=119  Identities=17%  Similarity=0.155  Sum_probs=87.6

Q ss_pred             HHHhhCC--CCCeEEEEcCcccHhHHHHHhhC--CeEEEEcCCHHHHHHHhcC------CCceEEeCCCCchhhhhhccC
Q 037961           26 LIASKTP--KRNLAWDVGTRSGQAAASLAQIY--QHVIATDTSPKQLKFAIKL------PNIRYQLTPTMSITELEQNVA   95 (262)
Q Consensus        26 ~l~~~~~--~~~~vlDvGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~~~~~~~   95 (262)
                      .|++.++  ....|||+|||.|.++..+++..  .+++.+|+|...++.++++      .+..+...+.     .+  +.
T Consensus       149 lLl~~l~~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~-----~~--~v  221 (300)
T COG2813         149 LLLETLPPDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNL-----YE--PV  221 (300)
T ss_pred             HHHHhCCccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEecc-----cc--cc
Confidence            4444443  33489999999999999999875  5899999999999999874      2222333331     11  12


Q ss_pred             CCCceeeEEEccccccC-C-----hhHHHHHHHHhhcCCCeEEEEEecCCCcccHHHHHhhccc
Q 037961           96 TQSSVDLVTIASALHWF-D-----LPQFYKQVKWVLKKPSGVIAAWTYTMPEINESVGAVFKPF  153 (262)
Q Consensus        96 ~~~~~D~V~~~~~~~~~-d-----~~~~l~~~~r~Lk~pgG~l~i~~~~~~~~~~~~~~~~~~~  153 (262)
                      .+ +||+|+||..+|-= +     ..++++++.+.|+ +||.|.|...+...+...+.++|..+
T Consensus       222 ~~-kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~-~gGeL~iVan~~l~y~~~L~~~Fg~v  283 (300)
T COG2813         222 EG-KFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLK-PGGELWIVANRHLPYEKKLKELFGNV  283 (300)
T ss_pred             cc-cccEEEeCCCccCCcchhHHHHHHHHHHHHHhhc-cCCEEEEEEcCCCChHHHHHHhcCCE
Confidence            33 89999999999933 2     2358999999999 99999998877766666667666543

>TIGR00536 hemK_fam HemK family putative methylases

Probab=99.16  E-value=3.8e-10  Score=96.88  Aligned_cols=106  Identities=25%  Similarity=0.279  Sum_probs=76.0

Q ss_pred             HHHHHHHHhhC---CCCCeEEEEcCcccHhHHHHHhhC--CeEEEEcCCHHHHHHHhcC-------CCceEEeCCCCchh
Q 037961           21 KELFKLIASKT---PKRNLAWDVGTRSGQAAASLAQIY--QHVIATDTSPKQLKFAIKL-------PNIRYQLTPTMSIT   88 (262)
Q Consensus        21 ~~~~~~l~~~~---~~~~~vlDvGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~   88 (262)
                      +.+++.+....   ++..+|||+|||+|.++..++..+  .+|+|+|+|+.+++.|+++       .++.+..++     
T Consensus        99 e~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d-----  173 (284)
T TIGR00536        99 EELVEKALASLISQNPILHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSN-----  173 (284)
T ss_pred             HHHHHHHHHHhhhcCCCCEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECc-----
Confidence            55566655433   122689999999999999999864  5899999999999998863       237777765     


Q ss_pred             hhhhccCCCCceeeEEEcccc-------------ccC-------------ChhHHHHHHHHhhcCCCeEEEE
Q 037961           89 ELEQNVATQSSVDLVTIASAL-------------HWF-------------DLPQFYKQVKWVLKKPSGVIAA  134 (262)
Q Consensus        89 ~~~~~~~~~~~~D~V~~~~~~-------------~~~-------------d~~~~l~~~~r~Lk~pgG~l~i  134 (262)
                       +.. +++..+||+|+++...             +|-             ....+++++.++|+ |||.+++
T Consensus       174 -~~~-~~~~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~-~gG~l~~  242 (284)
T TIGR00536       174 -LFE-PLAGQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLK-PNGFLVC  242 (284)
T ss_pred             -hhc-cCcCCCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhcc-CCCEEEE
Confidence             211 1234479999997322             111             13357889999999 9999987

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.

>PRK03612 spermidine synthase; Provisional

Probab=99.16  E-value=5e-10  Score=103.69  Aligned_cols=111  Identities=15%  Similarity=0.188  Sum_probs=81.0

Q ss_pred             ChHHHHHHHHhhCCCCCeEEEEcCcccHhHHHHHhhC--CeEEEEcCCHHHHHHHhcC-------------CCceEEeCC
Q 037961           19 YPKELFKLIASKTPKRNLAWDVGTRSGQAAASLAQIY--QHVIATDTSPKQLKFAIKL-------------PNIRYQLTP   83 (262)
Q Consensus        19 yp~~~~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~-------------~~~~~~~~~   83 (262)
                      |.+.+.......+++..+|||+|||+|..++.++++.  .+|+++|+++++++.++++             ++++++.+|
T Consensus       283 y~e~l~~~~l~~~~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~D  362 (521)
T PRK03612        283 YHEALVHPAMAASARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDD  362 (521)
T ss_pred             HHHHHHHHHHhhCCCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEECh
Confidence            4444433323334667889999999999999998874  6999999999999999872             456666655


Q ss_pred             CCchhhhhh-ccCCCCceeeEEEccccccC-C-----hhHHHHHHHHhhcCCCeEEEEEe
Q 037961           84 TMSITELEQ-NVATQSSVDLVTIASALHWF-D-----LPQFYKQVKWVLKKPSGVIAAWT  136 (262)
Q Consensus        84 ~~~~~~~~~-~~~~~~~~D~V~~~~~~~~~-d-----~~~~l~~~~r~Lk~pgG~l~i~~  136 (262)
                            +.. +.-.+++||+|+++..-++. +     .+++++.+.+.|| |||.+++..
T Consensus       363 ------a~~~l~~~~~~fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~-pgG~lv~~~  415 (521)
T PRK03612        363 ------AFNWLRKLAEKFDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLA-PDGLLVVQS  415 (521)
T ss_pred             ------HHHHHHhCCCCCCEEEEeCCCCCCcchhccchHHHHHHHHHhcC-CCeEEEEec
Confidence                  332 22234689999998665543 1     2358899999999 999999854

>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes

Probab=99.15  E-value=1.6e-10  Score=100.67  Aligned_cols=105  Identities=20%  Similarity=0.216  Sum_probs=71.3

Q ss_pred             CCCeEEEEcCcccHhHHHHHhh-CCeEEEEcCCHHHHHHHhcC----------------CCceEEeCCCCchhhhhh-cc
Q 037961           33 KRNLAWDVGTRSGQAAASLAQI-YQHVIATDTSPKQLKFAIKL----------------PNIRYQLTPTMSITELEQ-NV   94 (262)
Q Consensus        33 ~~~~vlDvGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~----------------~~~~~~~~~~~~~~~~~~-~~   94 (262)
                      ++..|||+|||-|.-...+... -..++|+|+++..++.|+++                -...+..+|.+. ..+.. ++
T Consensus        62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~-~~l~~~~~  140 (331)
T PF03291_consen   62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFS-ESLREKLP  140 (331)
T ss_dssp             TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCC-SHHHCTSS
T ss_pred             CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheecccccc-chhhhhcc
Confidence            7789999999988766666554 67899999999999998742                123445555222 12222 22


Q ss_pred             CCCCceeeEEEccccccC-ChhH----HHHHHHHhhcCCCeEEEEEecCC
Q 037961           95 ATQSSVDLVTIASALHWF-DLPQ----FYKQVKWVLKKPSGVIAAWTYTM  139 (262)
Q Consensus        95 ~~~~~~D~V~~~~~~~~~-d~~~----~l~~~~r~Lk~pgG~l~i~~~~~  139 (262)
                      ....+||+|-|.+++|+. ..+.    +++.+.+.|+ |||.|+..+...
T Consensus       141 ~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk-~GG~FIgT~~d~  189 (331)
T PF03291_consen  141 PRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLK-PGGYFIGTTPDS  189 (331)
T ss_dssp             STTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEE-EEEEEEEEEE-H
T ss_pred             ccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcC-CCCEEEEEecCH
Confidence            223699999999999998 4333    8899999999 999999866543

The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.

>TIGR00417 speE spermidine synthase

Probab=99.15  E-value=6.7e-10  Score=94.63  Aligned_cols=98  Identities=17%  Similarity=0.259  Sum_probs=73.4

Q ss_pred             CCCCeEEEEcCcccHhHHHHHhhC--CeEEEEcCCHHHHHHHhcC----------CCceEEeCCCCchhhhhh-ccCCCC
Q 037961           32 PKRNLAWDVGTRSGQAAASLAQIY--QHVIATDTSPKQLKFAIKL----------PNIRYQLTPTMSITELEQ-NVATQS   98 (262)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~----------~~~~~~~~~~~~~~~~~~-~~~~~~   98 (262)
                      +.+.+||++|||+|..+..++++.  .+++++|+++.+++.+++.          +++++..+|      +.. +.-..+
T Consensus        71 ~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D------~~~~l~~~~~  144 (270)
T TIGR00417        71 PNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDD------GFKFLADTEN  144 (270)
T ss_pred             CCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECc------hHHHHHhCCC
Confidence            455699999999999999888764  6899999999999998863          344555444      211 211256


Q ss_pred             ceeeEEEccccccC-C----hhHHHHHHHHhhcCCCeEEEEEe
Q 037961           99 SVDLVTIASALHWF-D----LPQFYKQVKWVLKKPSGVIAAWT  136 (262)
Q Consensus        99 ~~D~V~~~~~~~~~-d----~~~~l~~~~r~Lk~pgG~l~i~~  136 (262)
                      +||+|++....++. .    ...+++.+.++|+ |||++++..
T Consensus       145 ~yDvIi~D~~~~~~~~~~l~~~ef~~~~~~~L~-pgG~lv~~~  186 (270)
T TIGR00417       145 TFDVIIVDSTDPVGPAETLFTKEFYELLKKALN-EDGIFVAQS  186 (270)
T ss_pred             CccEEEEeCCCCCCcccchhHHHHHHHHHHHhC-CCcEEEEcC
Confidence            89999987664433 1    3568899999999 999999863

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.15  E-value=6.6e-10  Score=94.84  Aligned_cols=106  Identities=23%  Similarity=0.226  Sum_probs=77.6

Q ss_pred             HHHHHHHHhhC--CCCCeEEEEcCcccHhHHHHHhhC--CeEEEEcCCHHHHHHHhcC------CCceEEeCCCCchhhh
Q 037961           21 KELFKLIASKT--PKRNLAWDVGTRSGQAAASLAQIY--QHVIATDTSPKQLKFAIKL------PNIRYQLTPTMSITEL   90 (262)
Q Consensus        21 ~~~~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~~   90 (262)
                      +.+++.+....  .+..+|||+|||+|..+..++...  .+++|+|+|+.+++.++++      .++.+..++      +
T Consensus        94 e~l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d------~  167 (275)
T PRK09328         94 EELVEWALEALLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGD------W  167 (275)
T ss_pred             HHHHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEcc------c
Confidence            45566655333  356789999999999999999875  7899999999999998853      356777665      2


Q ss_pred             hhccCCCCceeeEEEcccccc------C---------------------ChhHHHHHHHHhhcCCCeEEEE
Q 037961           91 EQNVATQSSVDLVTIASALHW------F---------------------DLPQFYKQVKWVLKKPSGVIAA  134 (262)
Q Consensus        91 ~~~~~~~~~~D~V~~~~~~~~------~---------------------d~~~~l~~~~r~Lk~pgG~l~i  134 (262)
                      .. ++++++||+|+++....-      +                     ....+++++.++|+ |||.+++
T Consensus       168 ~~-~~~~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk-~gG~l~~  236 (275)
T PRK09328        168 FE-PLPGGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLK-PGGWLLL  236 (275)
T ss_pred             cC-cCCCCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcc-cCCEEEE
Confidence            11 123578999999754321      0                     12457788889999 9999998

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.14  E-value=6.9e-10  Score=96.31  Aligned_cols=102  Identities=17%  Similarity=0.152  Sum_probs=74.5

Q ss_pred             HHHHHHHHhhC--CCCCeEEEEcCcccHhHHHHHhhC---CeEEEEcCCHHHHHHHhcC------CCceEEeCCCCchhh
Q 037961           21 KELFKLIASKT--PKRNLAWDVGTRSGQAAASLAQIY---QHVIATDTSPKQLKFAIKL------PNIRYQLTPTMSITE   89 (262)
Q Consensus        21 ~~~~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~   89 (262)
                      +.+...+....  +++.+|||+|||+|.++..+++..   .+|+++|+++.|++.|++.      .++.++.+|      
T Consensus        66 p~l~a~ll~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD------  139 (322)
T PRK13943         66 PSLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGD------  139 (322)
T ss_pred             HHHHHHHHHhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCC------
Confidence            34444554443  467899999999999999998864   3699999999999988752      456777654      


Q ss_pred             hhhccCCCCceeeEEEccccccCChhHHHHHHHHhhcCCCeEEEE
Q 037961           90 LEQNVATQSSVDLVTIASALHWFDLPQFYKQVKWVLKKPSGVIAA  134 (262)
Q Consensus        90 ~~~~~~~~~~~D~V~~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i  134 (262)
                      +.......++||+|++..+++.     ....+.+.|+ |||.+++
T Consensus       140 ~~~~~~~~~~fD~Ii~~~g~~~-----ip~~~~~~Lk-pgG~Lvv  178 (322)
T PRK13943        140 GYYGVPEFAPYDVIFVTVGVDE-----VPETWFTQLK-EGGRVIV  178 (322)
T ss_pred             hhhcccccCCccEEEECCchHH-----hHHHHHHhcC-CCCEEEE
Confidence            3333334467999998766543     2345778999 9999887

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=99.14  E-value=1.1e-09  Score=86.31  Aligned_cols=104  Identities=21%  Similarity=0.264  Sum_probs=80.8

Q ss_pred             HHHHHHHHhhC--CCCCeEEEEcCcccHhHHHHHh--hCCeEEEEcCCHHHHHHHhcC------CCceEEeCCCCchhhh
Q 037961           21 KELFKLIASKT--PKRNLAWDVGTRSGQAAASLAQ--IYQHVIATDTSPKQLKFAIKL------PNIRYQLTPTMSITEL   90 (262)
Q Consensus        21 ~~~~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~--~~~~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~~   90 (262)
                      +++--..+..+  .++.+++|||||||+.+..++.  ...+|+++|-++++++..+++      ++++.+.++      +
T Consensus        20 ~EIRal~ls~L~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~------A   93 (187)
T COG2242          20 EEIRALTLSKLRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGD------A   93 (187)
T ss_pred             HHHHHHHHHhhCCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEecc------c
Confidence            34444444444  4789999999999999999994  357999999999999987753      788888876      2


Q ss_pred             hhccCCCCceeeEEEccccccCChhHHHHHHHHhhcCCCeEEEE
Q 037961           91 EQNVATQSSVDLVTIASALHWFDLPQFYKQVKWVLKKPSGVIAA  134 (262)
Q Consensus        91 ~~~~~~~~~~D~V~~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i  134 (262)
                      ...-....++|.|+...+   -..+.+++.+...|| |||.+++
T Consensus        94 p~~L~~~~~~daiFIGGg---~~i~~ile~~~~~l~-~ggrlV~  133 (187)
T COG2242          94 PEALPDLPSPDAIFIGGG---GNIEEILEAAWERLK-PGGRLVA  133 (187)
T ss_pred             hHhhcCCCCCCEEEECCC---CCHHHHHHHHHHHcC-cCCeEEE
Confidence            222112227999999887   467889999999999 9999998

>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes

Probab=99.12  E-value=3.5e-10  Score=90.84  Aligned_cols=110  Identities=17%  Similarity=0.260  Sum_probs=79.9

Q ss_pred             HHHHHHHHhhCCCCCe-EEEEcCcccHhHHHHHhhCCe--EEEEcCCHHHHHHHhc------CCC----ceEEeCCCCch
Q 037961           21 KELFKLIASKTPKRNL-AWDVGTRSGQAAASLAQIYQH--VIATDTSPKQLKFAIK------LPN----IRYQLTPTMSI   87 (262)
Q Consensus        21 ~~~~~~l~~~~~~~~~-vlDvGcG~G~~~~~l~~~~~~--v~~vD~s~~~~~~a~~------~~~----~~~~~~~~~~~   87 (262)
                      +.+.+.|..++++... |||||||||+.+..+++...+  ..-.|+++..+...+.      .+|    +.....+    
T Consensus        12 ~pIl~vL~~~l~~~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~----   87 (204)
T PF06080_consen   12 DPILEVLKQYLPDSGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSA----   87 (204)
T ss_pred             hHHHHHHHHHhCccCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCC----
Confidence            4567778888876665 999999999999999998654  4488999887643321      122    1111111    


Q ss_pred             hhhhhccC------CCCceeeEEEccccccC---ChhHHHHHHHHhhcCCCeEEEEEecC
Q 037961           88 TELEQNVA------TQSSVDLVTIASALHWF---DLPQFYKQVKWVLKKPSGVIAAWTYT  138 (262)
Q Consensus        88 ~~~~~~~~------~~~~~D~V~~~~~~~~~---d~~~~l~~~~r~Lk~pgG~l~i~~~~  138 (262)
                         ..++.      ..++||.|++.+++|-+   ..+.+++.+.++|+ |||.|++|+..
T Consensus        88 ---~~w~~~~~~~~~~~~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~-~gG~L~~YGPF  143 (204)
T PF06080_consen   88 ---PPWPWELPAPLSPESFDAIFCINMLHISPWSAVEGLFAGAARLLK-PGGLLFLYGPF  143 (204)
T ss_pred             ---CCCccccccccCCCCcceeeehhHHHhcCHHHHHHHHHHHHHhCC-CCCEEEEeCCc
Confidence               11222      35689999999999966   45669999999999 99999998753

The function of this family is unknown.

>PLN02366 spermidine synthase

Probab=99.12  E-value=1.2e-09  Score=94.42  Aligned_cols=98  Identities=16%  Similarity=0.252  Sum_probs=75.3

Q ss_pred             hCCCCCeEEEEcCcccHhHHHHHhh--CCeEEEEcCCHHHHHHHhcC----------CCceEEeCCCCchhhhhhc-c-C
Q 037961           30 KTPKRNLAWDVGTRSGQAAASLAQI--YQHVIATDTSPKQLKFAIKL----------PNIRYQLTPTMSITELEQN-V-A   95 (262)
Q Consensus        30 ~~~~~~~vlDvGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~----------~~~~~~~~~~~~~~~~~~~-~-~   95 (262)
                      ..++..+||+||||.|.+++.++++  ..+|+.+|+++.+++.+++.          ++++++.+|      +... . .
T Consensus        88 ~~~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~D------a~~~l~~~  161 (308)
T PLN02366         88 SIPNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGD------GVEFLKNA  161 (308)
T ss_pred             hCCCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEECh------HHHHHhhc
Confidence            3467788999999999999999887  35899999999999999863          356777665      2211 1 1


Q ss_pred             CCCceeeEEEccccccCC-----hhHHHHHHHHhhcCCCeEEEE
Q 037961           96 TQSSVDLVTIASALHWFD-----LPQFYKQVKWVLKKPSGVIAA  134 (262)
Q Consensus        96 ~~~~~D~V~~~~~~~~~d-----~~~~l~~~~r~Lk~pgG~l~i  134 (262)
                      ++++||+|++...-++..     ...+++.+.+.|+ |||++++
T Consensus       162 ~~~~yDvIi~D~~dp~~~~~~L~t~ef~~~~~~~L~-pgGvlv~  204 (308)
T PLN02366        162 PEGTYDAIIVDSSDPVGPAQELFEKPFFESVARALR-PGGVVCT  204 (308)
T ss_pred             cCCCCCEEEEcCCCCCCchhhhhHHHHHHHHHHhcC-CCcEEEE
Confidence            356899999876554432     2358999999999 9999987

>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific

Probab=99.10  E-value=1.2e-09  Score=92.07  Aligned_cols=109  Identities=19%  Similarity=0.111  Sum_probs=76.3

Q ss_pred             HHHHHHHHhhCC---CCCeEEEEcCcccHhHHHHHhh--CCeEEEEcCCHHHHHHHhcC---CCceEEeCCCCchhhhhh
Q 037961           21 KELFKLIASKTP---KRNLAWDVGTRSGQAAASLAQI--YQHVIATDTSPKQLKFAIKL---PNIRYQLTPTMSITELEQ   92 (262)
Q Consensus        21 ~~~~~~l~~~~~---~~~~vlDvGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~---~~~~~~~~~~~~~~~~~~   92 (262)
                      +.+++.+.....   ...+|||+|||+|.++..++..  +.+|+++|+|+.+++.|+++   .++++..+|      +.+
T Consensus        71 e~Lv~~~l~~~~~~~~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~~~~~~~D------~~~  144 (251)
T TIGR03704        71 EFLVDEAAALARPRSGTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAGGTVHEGD------LYD  144 (251)
T ss_pred             HHHHHHHHHhhcccCCCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCEEEEee------chh
Confidence            455555554432   2357999999999999999875  45899999999999998864   345677665      211


Q ss_pred             -cc-CCCCceeeEEEcccccc------CC---------------------hhHHHHHHHHhhcCCCeEEEEEe
Q 037961           93 -NV-ATQSSVDLVTIASALHW------FD---------------------LPQFYKQVKWVLKKPSGVIAAWT  136 (262)
Q Consensus        93 -~~-~~~~~~D~V~~~~~~~~------~d---------------------~~~~l~~~~r~Lk~pgG~l~i~~  136 (262)
                       ++ ...++||+|+++....-      ++                     ...++..+.++|+ |||.+++..
T Consensus       145 ~l~~~~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~-~gG~l~l~~  216 (251)
T TIGR03704       145 ALPTALRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLA-PGGHLLVET  216 (251)
T ss_pred             hcchhcCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcC-CCCEEEEEE
Confidence             11 01357999999865421      00                     2357778889999 999999743

This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.

>KOG2361 consensus Predicted methyltransferase [General function prediction only]

Probab=99.09  E-value=2.3e-10  Score=92.96  Aligned_cols=104  Identities=20%  Similarity=0.281  Sum_probs=78.5

Q ss_pred             CeEEEEcCcccHhHHHHHhh----CCeEEEEcCCHHHHHHHhcCC-----CceEEeCCCCchhhhhhccCCCCceeeEEE
Q 037961           35 NLAWDVGTRSGQAAASLAQI----YQHVIATDTSPKQLKFAIKLP-----NIRYQLTPTMSITELEQNVATQSSVDLVTI  105 (262)
Q Consensus        35 ~~vlDvGcG~G~~~~~l~~~----~~~v~~vD~s~~~~~~a~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~  105 (262)
                      .+|||||||.|....++.+-    .-.|.++|.||..++..++..     ++...+.| +...+ ...+++.+++|+|++
T Consensus        73 ~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~afv~D-lt~~~-~~~~~~~~svD~it~  150 (264)
T KOG2361|consen   73 ETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDESRVEAFVWD-LTSPS-LKEPPEEGSVDIITL  150 (264)
T ss_pred             hhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccchhhhccccee-ccchh-ccCCCCcCccceEEE
Confidence            37899999999999999874    357999999999999988642     22222222 11111 234567899999999


Q ss_pred             ccccccCChhH---HHHHHHHhhcCCCeEEEEEecCCCc
Q 037961          106 ASALHWFDLPQ---FYKQVKWVLKKPSGVIAAWTYTMPE  141 (262)
Q Consensus       106 ~~~~~~~d~~~---~l~~~~r~Lk~pgG~l~i~~~~~~~  141 (262)
                      .+.+--+.+++   ++.++.++|| |||.|++-.|+...
T Consensus       151 IFvLSAi~pek~~~a~~nl~~llK-PGG~llfrDYg~~D  188 (264)
T KOG2361|consen  151 IFVLSAIHPEKMQSVIKNLRTLLK-PGGSLLFRDYGRYD  188 (264)
T ss_pred             EEEEeccChHHHHHHHHHHHHHhC-CCcEEEEeecccch
Confidence            99998886555   8999999999 99999997776543

>KOG2899 consensus Predicted methyltransferase [General function prediction only]

Probab=99.09  E-value=5e-10  Score=90.96  Aligned_cols=112  Identities=21%  Similarity=0.400  Sum_probs=76.9

Q ss_pred             hHHHHHHHHhhCCCCCeEEEEcCcccHhHHHHHhhC--CeEEEEcCCHHHHHHHhcC-----------C-----------
Q 037961           20 PKELFKLIASKTPKRNLAWDVGTRSGQAAASLAQIY--QHVIATDTSPKQLKFAIKL-----------P-----------   75 (262)
Q Consensus        20 p~~~~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~-----------~-----------   75 (262)
                      ++..+..|....-....+|||||-.|.+|..+++.+  ..|+|+|+++..++.|++.           .           
T Consensus        45 ~D~rLk~L~~~~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~  124 (288)
T KOG2899|consen   45 SDPRLKVLEKDWFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQF  124 (288)
T ss_pred             CChhhhhccccccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCcccccccc
Confidence            344444443222355678999999999999999974  3699999999999999863           1           


Q ss_pred             -------------------CceEEeCC-CCchhhhhhccCCCCceeeEEEccccccCC-------hhHHHHHHHHhhcCC
Q 037961           76 -------------------NIRYQLTP-TMSITELEQNVATQSSVDLVTIASALHWFD-------LPQFYKQVKWVLKKP  128 (262)
Q Consensus        76 -------------------~~~~~~~~-~~~~~~~~~~~~~~~~~D~V~~~~~~~~~d-------~~~~l~~~~r~Lk~p  128 (262)
                                         ++.+.... .+...|+  +-+....||+|+|-..-.|+.       ...+++++.++|. |
T Consensus       125 ~~is~~~~a~~a~t~~~p~n~~f~~~n~vle~~df--l~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~-p  201 (288)
T KOG2899|consen  125 GPISQRNEADRAFTTDFPDNVWFQKENYVLESDDF--LDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLH-P  201 (288)
T ss_pred             ccccccccccccccccCCcchhcccccEEEecchh--hhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhC-c
Confidence                               11111111 1111122  123466899999987776662       4459999999999 9


Q ss_pred             CeEEEE
Q 037961          129 SGVIAA  134 (262)
Q Consensus       129 gG~l~i  134 (262)
                      ||+|++
T Consensus       202 gGiLvv  207 (288)
T KOG2899|consen  202 GGILVV  207 (288)
T ss_pred             CcEEEE
Confidence            999999

>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]

Probab=99.07  E-value=3.4e-10  Score=92.70  Aligned_cols=87  Identities=23%  Similarity=0.275  Sum_probs=70.6

Q ss_pred             CCCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhcCCCceEEeCCCCchhhhhhccCCCCceeeEEEcccccc
Q 037961           32 PKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKLPNIRYQLTPTMSITELEQNVATQSSVDLVTIASALHW  111 (262)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~~~  111 (262)
                      +...+|.|+|||.+.++.   .....|...|+-+.         +-.+..+      |+.++|++++++|++++..++.-
T Consensus       179 ~~~~vIaD~GCGEakiA~---~~~~kV~SfDL~a~---------~~~V~~c------Dm~~vPl~d~svDvaV~CLSLMg  240 (325)
T KOG3045|consen  179 PKNIVIADFGCGEAKIAS---SERHKVHSFDLVAV---------NERVIAC------DMRNVPLEDESVDVAVFCLSLMG  240 (325)
T ss_pred             cCceEEEecccchhhhhh---ccccceeeeeeecC---------CCceeec------cccCCcCccCcccEEEeeHhhhc
Confidence            567888999999998775   44667888887532         3334433      46778999999999999999998


Q ss_pred             CChhHHHHHHHHhhcCCCeEEEEEec
Q 037961          112 FDLPQFYKQVKWVLKKPSGVIAAWTY  137 (262)
Q Consensus       112 ~d~~~~l~~~~r~Lk~pgG~l~i~~~  137 (262)
                      .|...++.|++|+|+ |||.+.|-..
T Consensus       241 tn~~df~kEa~RiLk-~gG~l~IAEv  265 (325)
T KOG3045|consen  241 TNLADFIKEANRILK-PGGLLYIAEV  265 (325)
T ss_pred             ccHHHHHHHHHHHhc-cCceEEEEeh
Confidence            899999999999999 9999999443

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=99.07  E-value=1.3e-09  Score=100.57  Aligned_cols=93  Identities=24%  Similarity=0.173  Sum_probs=68.3

Q ss_pred             CCeEEEEcCcccHhHHHHHhh--CCeEEEEcCCHHHHHHHhcC-------CCceEEeCCCCchhhhhhccCCCCceeeEE
Q 037961           34 RNLAWDVGTRSGQAAASLAQI--YQHVIATDTSPKQLKFAIKL-------PNIRYQLTPTMSITELEQNVATQSSVDLVT  104 (262)
Q Consensus        34 ~~~vlDvGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~  104 (262)
                      ..+|||+|||+|.++..++..  ..+|+++|+|+.+++.|+++       .++.+..++      +.. .++.++||+|+
T Consensus       139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D------~~~-~~~~~~fDlIv  211 (506)
T PRK01544        139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSN------WFE-NIEKQKFDFIV  211 (506)
T ss_pred             CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecc------hhh-hCcCCCccEEE
Confidence            357999999999999998875  56999999999999999863       245666654      211 12456899999


Q ss_pred             EccccccC-------------C--------------hhHHHHHHHHhhcCCCeEEEE
Q 037961          105 IASALHWF-------------D--------------LPQFYKQVKWVLKKPSGVIAA  134 (262)
Q Consensus       105 ~~~~~~~~-------------d--------------~~~~l~~~~r~Lk~pgG~l~i  134 (262)
                      ++......             +              ...+++++.++|+ |||.+++
T Consensus       212 sNPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~-~gG~l~l  267 (506)
T PRK01544        212 SNPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLK-PNGKIIL  267 (506)
T ss_pred             ECCCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhcc-CCCEEEE
Confidence            96543211             0              1235678889999 9999987

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=99.06  E-value=1.3e-09  Score=98.85  Aligned_cols=100  Identities=14%  Similarity=0.194  Sum_probs=74.3

Q ss_pred             CCCCeEEEEcCcccHhHHHHHhhC--CeEEEEcCCHHHHHHHhcC-----CCceEEeCCCCchhhhhhcc--CCCCceee
Q 037961           32 PKRNLAWDVGTRSGQAAASLAQIY--QHVIATDTSPKQLKFAIKL-----PNIRYQLTPTMSITELEQNV--ATQSSVDL  102 (262)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~-----~~~~~~~~~~~~~~~~~~~~--~~~~~~D~  102 (262)
                      .++.+|||+|||+|..+..++..+  .+|+++|+++.+++.++++     .++.+..+|      +...+  ++.++||.
T Consensus       243 ~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D------~~~~~~~~~~~~fD~  316 (427)
T PRK10901        243 QNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLKATVIVGD------ARDPAQWWDGQPFDR  316 (427)
T ss_pred             CCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcC------cccchhhcccCCCCE
Confidence            467899999999999999999874  5899999999999998753     235566655      32221  23568999


Q ss_pred             EEEcccc------------ccC-Ch----------hHHHHHHHHhhcCCCeEEEEEecC
Q 037961          103 VTIASAL------------HWF-DL----------PQFYKQVKWVLKKPSGVIAAWTYT  138 (262)
Q Consensus       103 V~~~~~~------------~~~-d~----------~~~l~~~~r~Lk~pgG~l~i~~~~  138 (262)
                      |++...+            +|. .+          .+++..+.++|| |||.+++.+++
T Consensus       317 Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~Lk-pGG~lvystcs  374 (427)
T PRK10901        317 ILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLK-PGGTLLYATCS  374 (427)
T ss_pred             EEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcC-CCCEEEEEeCC
Confidence            9964422            243 22          358999999999 99999986654

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.06  E-value=1.1e-09  Score=88.07  Aligned_cols=91  Identities=19%  Similarity=0.185  Sum_probs=72.9

Q ss_pred             CCCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhcC------CCceEEeCCCCchhhhhhccCCCCceeeEEE
Q 037961           32 PKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKL------PNIRYQLTPTMSITELEQNVATQSSVDLVTI  105 (262)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~  105 (262)
                      .++..|||||||+|..+..|++...+|+.+|..+...+.|+++      .|+.+.++|.     ..-++ +.++||.|++
T Consensus        71 ~~g~~VLEIGtGsGY~aAvla~l~~~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG-----~~G~~-~~aPyD~I~V  144 (209)
T COG2518          71 KPGDRVLEIGTGSGYQAAVLARLVGRVVSIERIEELAEQARRNLETLGYENVTVRHGDG-----SKGWP-EEAPYDRIIV  144 (209)
T ss_pred             CCCCeEEEECCCchHHHHHHHHHhCeEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCc-----ccCCC-CCCCcCEEEE
Confidence            5789999999999999999999988999999999999999862      5788888871     11122 4588999998


Q ss_pred             ccccccCChhHHHHHHHHhhcCCCeEEEE
Q 037961          106 ASALHWFDLPQFYKQVKWVLKKPSGVIAA  134 (262)
Q Consensus       106 ~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i  134 (262)
                      .-+..-+     =+.+.+.|| |||++++
T Consensus       145 taaa~~v-----P~~Ll~QL~-~gGrlv~  167 (209)
T COG2518         145 TAAAPEV-----PEALLDQLK-PGGRLVI  167 (209)
T ss_pred             eeccCCC-----CHHHHHhcc-cCCEEEE
Confidence            7665332     234667899 9999998

>KOG1271 consensus Methyltransferases [General function prediction only]

Probab=99.06  E-value=1.5e-09  Score=84.50  Aligned_cols=113  Identities=19%  Similarity=0.247  Sum_probs=80.2

Q ss_pred             HHHHHHHHhhCC------CCCeEEEEcCcccHhHHHHHhhCC--eEEEEcCCHHHHHHHhc------CC-CceEEeCCCC
Q 037961           21 KELFKLIASKTP------KRNLAWDVGTRSGQAAASLAQIYQ--HVIATDTSPKQLKFAIK------LP-NIRYQLTPTM   85 (262)
Q Consensus        21 ~~~~~~l~~~~~------~~~~vlDvGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~------~~-~~~~~~~~~~   85 (262)
                      ..+++++.....      ...+|||+|||.|.+...|++.+.  .++|+|.|+..++.|+.      .+ .|+|.+.|  
T Consensus        49 ~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~D--  126 (227)
T KOG1271|consen   49 ERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLD--  126 (227)
T ss_pred             HHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEee--
Confidence            445667666543      334899999999999999999754  49999999999998864      23 38888876  


Q ss_pred             chhhhhhccCCCCceeeEEEcccc-----ccCC----hhHHHHHHHHhhcCCCeEEEEEecCCC
Q 037961           86 SITELEQNVATQSSVDLVTIASAL-----HWFD----LPQFYKQVKWVLKKPSGVIAAWTYTMP  140 (262)
Q Consensus        86 ~~~~~~~~~~~~~~~D~V~~~~~~-----~~~d----~~~~l~~~~r~Lk~pgG~l~i~~~~~~  140 (262)
                          +-+-.+..++||+|+=-..+     +-..    +..-+..+.++|+ |||+|+|..++..
T Consensus       127 ----I~~~~~~~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~-~~gifvItSCN~T  185 (227)
T KOG1271|consen  127 ----ITDPDFLSGQFDLVLDKGTLDAISLSPDGPVGRLVVYLDSVEKLLS-PGGIFVITSCNFT  185 (227)
T ss_pred             ----ccCCcccccceeEEeecCceeeeecCCCCcccceeeehhhHhhccC-CCcEEEEEecCcc
Confidence                22212356788888753333     2121    1235778899999 9999999776654

>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed

Probab=99.05  E-value=1.3e-09  Score=99.26  Aligned_cols=122  Identities=10%  Similarity=0.083  Sum_probs=84.0

Q ss_pred             HHHHHHHHhhC--CCCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhcC------CCceEEeCCCCchhhhhh
Q 037961           21 KELFKLIASKT--PKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKL------PNIRYQLTPTMSITELEQ   92 (262)
Q Consensus        21 ~~~~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~~~~   92 (262)
                      +.+++.+.+.+  .++.+|||+|||+|.++..+++.+.+|+|+|+|+.|++.|+++      .++++..+|..  .....
T Consensus       283 e~l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~~~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~--~~l~~  360 (443)
T PRK13168        283 QKMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQAAEVVGVEGVEAMVERARENARRNGLDNVTFYHANLE--EDFTD  360 (443)
T ss_pred             HHHHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChH--Hhhhh
Confidence            45566666554  3667999999999999999999999999999999999998853      46788877610  01122


Q ss_pred             ccCCCCceeeEEEccccccCChhHHHHHHHHhhcCCCeEEEEEecCCCcccHHHHHh
Q 037961           93 NVATQSSVDLVTIASALHWFDLPQFYKQVKWVLKKPSGVIAAWTYTMPEINESVGAV  149 (262)
Q Consensus        93 ~~~~~~~~D~V~~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~~~~~~~~~~~~~  149 (262)
                      .++.+++||+|+++..-.-  ....++.+.+ ++ |++.+++.+ ++.++.+.+..+
T Consensus       361 ~~~~~~~fD~Vi~dPPr~g--~~~~~~~l~~-~~-~~~ivyvSC-np~tlaRDl~~L  412 (443)
T PRK13168        361 QPWALGGFDKVLLDPPRAG--AAEVMQALAK-LG-PKRIVYVSC-NPATLARDAGVL  412 (443)
T ss_pred             hhhhcCCCCEEEECcCCcC--hHHHHHHHHh-cC-CCeEEEEEe-ChHHhhccHHHH
Confidence            3344568999998765332  2345555555 57 888877744 444444444444

>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases

Probab=99.05  E-value=1.2e-09  Score=87.49  Aligned_cols=106  Identities=19%  Similarity=0.253  Sum_probs=65.4

Q ss_pred             CCCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhcCCCceEEeCCCCchhhhhhccCCCCceeeEEEcccccc
Q 037961           32 PKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKLPNIRYQLTPTMSITELEQNVATQSSVDLVTIASALHW  111 (262)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~~~  111 (262)
                      ++..+|.|+|||.+.++..+. ....|..-|+-+.       .+.  +..+      |+..+|++++++|++++..++.-
T Consensus        71 ~~~~viaD~GCGdA~la~~~~-~~~~V~SfDLva~-------n~~--Vtac------dia~vPL~~~svDv~VfcLSLMG  134 (219)
T PF05148_consen   71 PKSLVIADFGCGDAKLAKAVP-NKHKVHSFDLVAP-------NPR--VTAC------DIANVPLEDESVDVAVFCLSLMG  134 (219)
T ss_dssp             -TTS-EEEES-TT-HHHHH---S---EEEEESS-S-------STT--EEES-------TTS-S--TT-EEEEEEES---S
T ss_pred             CCCEEEEECCCchHHHHHhcc-cCceEEEeeccCC-------CCC--EEEe------cCccCcCCCCceeEEEEEhhhhC
Confidence            556789999999999996653 4567888888632       222  3333      57889999999999999999999


Q ss_pred             CChhHHHHHHHHhhcCCCeEEEEEecC--CCcccHHHHHhhccccc
Q 037961          112 FDLPQFYKQVKWVLKKPSGVIAAWTYT--MPEINESVGAVFKPFDT  155 (262)
Q Consensus       112 ~d~~~~l~~~~r~Lk~pgG~l~i~~~~--~~~~~~~~~~~~~~~~~  155 (262)
                      .|...++.|+.|+|| |||.|.|....  ... ...+.+.+..+..
T Consensus       135 Tn~~~fi~EA~RvLK-~~G~L~IAEV~SRf~~-~~~F~~~~~~~GF  178 (219)
T PF05148_consen  135 TNWPDFIREANRVLK-PGGILKIAEVKSRFEN-VKQFIKALKKLGF  178 (219)
T ss_dssp             S-HHHHHHHHHHHEE-EEEEEEEEEEGGG-S--HHHHHHHHHCTTE
T ss_pred             CCcHHHHHHHHheec-cCcEEEEEEecccCcC-HHHHHHHHHHCCC
Confidence            999999999999999 99999995543  222 2455555555543

; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.

>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional

Probab=99.05  E-value=3.1e-09  Score=94.94  Aligned_cols=118  Identities=12%  Similarity=0.127  Sum_probs=79.6

Q ss_pred             CCCCeEEEEcCcccHhHHHHHhhCC-eEEEEcCCHHHHHHHhcC--------CCceEEeCCCCchhhhhhccCCCCceee
Q 037961           32 PKRNLAWDVGTRSGQAAASLAQIYQ-HVIATDTSPKQLKFAIKL--------PNIRYQLTPTMSITELEQNVATQSSVDL  102 (262)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~D~  102 (262)
                      .++.+|||+|||+|.++...+..++ +|+++|+|+.+++.|+++        .+++++.+|.+..  ...+....++||+
T Consensus       219 ~~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~--l~~~~~~~~~fDl  296 (396)
T PRK15128        219 VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKL--LRTYRDRGEKFDV  296 (396)
T ss_pred             cCCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHH--HHHHHhcCCCCCE
Confidence            4567899999999999988766655 899999999999998863        2467777762110  1111113568999


Q ss_pred             EEEccccccCC----------hhHHHHHHHHhhcCCCeEEEEEecCCCcccHHHHHhhcc
Q 037961          103 VTIASALHWFD----------LPQFYKQVKWVLKKPSGVIAAWTYTMPEINESVGAVFKP  152 (262)
Q Consensus       103 V~~~~~~~~~d----------~~~~l~~~~r~Lk~pgG~l~i~~~~~~~~~~~~~~~~~~  152 (262)
                      |+++...---+          ...++..+.++|+ |||.|+.++++...-.+.+.++..+
T Consensus       297 VilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk-~gG~lv~~scs~~~~~~~f~~~v~~  355 (396)
T PRK15128        297 IVMDPPKFVENKSQLMGACRGYKDINMLAIQLLN-PGGILLTFSCSGLMTSDLFQKIIAD  355 (396)
T ss_pred             EEECCCCCCCChHHHHHHHHHHHHHHHHHHHHcC-CCeEEEEEeCCCcCCHHHHHHHHHH
Confidence            99986642112          2234556789999 9999998776543323445554433

>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]

Probab=99.04  E-value=6.7e-10  Score=93.70  Aligned_cols=109  Identities=17%  Similarity=0.158  Sum_probs=81.0

Q ss_pred             hhCCCCCeEEEEcCcccHhHHHHHhh-CCeEEEEcCCHHHHHHHhcC--------C----CceEEeCCCCchhhhhh-cc
Q 037961           29 SKTPKRNLAWDVGTRSGQAAASLAQI-YQHVIATDTSPKQLKFAIKL--------P----NIRYQLTPTMSITELEQ-NV   94 (262)
Q Consensus        29 ~~~~~~~~vlDvGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~--------~----~~~~~~~~~~~~~~~~~-~~   94 (262)
                      .+.++.+.++|+|||-|.-.+.+-.. ..+++|+|+.+.-+++|+++        .    .+.++.+|.+. ..+.+ ++
T Consensus       113 ~y~~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~-~~l~d~~e  191 (389)
T KOG1975|consen  113 LYTKRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFK-ERLMDLLE  191 (389)
T ss_pred             HHhccccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccch-hHHHHhcc
Confidence            34568888999999998777766655 46899999999999999852        1    36778887221 12222 33


Q ss_pred             CCCCceeeEEEccccccC--ChhH---HHHHHHHhhcCCCeEEEEEecCC
Q 037961           95 ATQSSVDLVTIASALHWF--DLPQ---FYKQVKWVLKKPSGVIAAWTYTM  139 (262)
Q Consensus        95 ~~~~~~D~V~~~~~~~~~--d~~~---~l~~~~r~Lk~pgG~l~i~~~~~  139 (262)
                      ..+.+||+|-|-+++|+.  ..++   ++.++.+.|+ |||+|+-.....
T Consensus       192 ~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~Lk-pGG~FIgTiPds  240 (389)
T KOG1975|consen  192 FKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLK-PGGVFIGTIPDS  240 (389)
T ss_pred             CCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcC-CCcEEEEecCcH
Confidence            456669999999999987  3333   8999999999 999999854443

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=99.04  E-value=9.6e-10  Score=89.77  Aligned_cols=100  Identities=20%  Similarity=0.251  Sum_probs=71.0

Q ss_pred             HHHHHHhhC--CCCCeEEEEcCcccHhHHHHHhh-C--CeEEEEcCCHHHHHHHhcC------CCceEEeCCCCchhhhh
Q 037961           23 LFKLIASKT--PKRNLAWDVGTRSGQAAASLAQI-Y--QHVIATDTSPKQLKFAIKL------PNIRYQLTPTMSITELE   91 (262)
Q Consensus        23 ~~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~-~--~~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~~~   91 (262)
                      +...++..+  +++.+|||||||+|..|..++.. +  ..|+++|..+.+++.|+++      .++.+..+|.     ..
T Consensus        60 ~~a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg-----~~  134 (209)
T PF01135_consen   60 MVARMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDG-----SE  134 (209)
T ss_dssp             HHHHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-G-----GG
T ss_pred             HHHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcch-----hh
Confidence            344444443  68899999999999999999886 3  3699999999999999863      5788888871     11


Q ss_pred             hccCCCCceeeEEEccccccCChhHHHHHHHHhhcCCCeEEEE
Q 037961           92 QNVATQSSVDLVTIASALHWFDLPQFYKQVKWVLKKPSGVIAA  134 (262)
Q Consensus        92 ~~~~~~~~~D~V~~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i  134 (262)
                      .++ ..++||.|++..+..     ..-..+.+.|+ +||+|++
T Consensus       135 g~~-~~apfD~I~v~~a~~-----~ip~~l~~qL~-~gGrLV~  170 (209)
T PF01135_consen  135 GWP-EEAPFDRIIVTAAVP-----EIPEALLEQLK-PGGRLVA  170 (209)
T ss_dssp             TTG-GG-SEEEEEESSBBS-----S--HHHHHTEE-EEEEEEE
T ss_pred             ccc-cCCCcCEEEEeeccc-----hHHHHHHHhcC-CCcEEEE
Confidence            122 456899999987764     23345777899 9999998

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>PRK14904 16S rRNA methyltransferase B; Provisional

Probab=99.03  E-value=3e-09  Score=96.94  Aligned_cols=99  Identities=17%  Similarity=0.239  Sum_probs=73.8

Q ss_pred             CCCCeEEEEcCcccHhHHHHHhh---CCeEEEEcCCHHHHHHHhcC------CCceEEeCCCCchhhhhhccCCCCceee
Q 037961           32 PKRNLAWDVGTRSGQAAASLAQI---YQHVIATDTSPKQLKFAIKL------PNIRYQLTPTMSITELEQNVATQSSVDL  102 (262)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~D~  102 (262)
                      .++.+|||+|||+|..|..+++.   ..+|+++|+|+.+++.++++      .++.+..+|      +..++ ++++||+
T Consensus       249 ~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~D------a~~~~-~~~~fD~  321 (445)
T PRK14904        249 QPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGD------ARSFS-PEEQPDA  321 (445)
T ss_pred             CCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCc------ccccc-cCCCCCE
Confidence            46789999999999999888764   45899999999999988753      346666654      33333 4568999


Q ss_pred             EEEccc------------cccC-Ch----------hHHHHHHHHhhcCCCeEEEEEecC
Q 037961          103 VTIASA------------LHWF-DL----------PQFYKQVKWVLKKPSGVIAAWTYT  138 (262)
Q Consensus       103 V~~~~~------------~~~~-d~----------~~~l~~~~r~Lk~pgG~l~i~~~~  138 (262)
                      |++.-.            ..|. ++          .+++..+.++|| |||+|+..+++
T Consensus       322 Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lk-pgG~lvystcs  379 (445)
T PRK14904        322 ILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLK-PGGVLVYATCS  379 (445)
T ss_pred             EEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcC-CCcEEEEEeCC
Confidence            996311            1233 22          247999999999 99999986665

>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like

Probab=99.03  E-value=9.3e-10  Score=88.90  Aligned_cols=95  Identities=29%  Similarity=0.385  Sum_probs=68.2

Q ss_pred             CCCeEEEEcCcccHhHHHH-HhhCCeEEEEcCCHHHHHHHhcC-----CC-ceEEeCCCCchhhhhhccCCCCceeeEEE
Q 037961           33 KRNLAWDVGTRSGQAAASL-AQIYQHVIATDTSPKQLKFAIKL-----PN-IRYQLTPTMSITELEQNVATQSSVDLVTI  105 (262)
Q Consensus        33 ~~~~vlDvGcG~G~~~~~l-~~~~~~v~~vD~s~~~~~~a~~~-----~~-~~~~~~~~~~~~~~~~~~~~~~~~D~V~~  105 (262)
                      ...++||+|||.|..|..+ .+.+.+|..+|+++..++.|++.     .+ .++.+.      .++++.++.++||+|++
T Consensus        55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~------gLQ~f~P~~~~YDlIW~  128 (218)
T PF05891_consen   55 KFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCV------GLQDFTPEEGKYDLIWI  128 (218)
T ss_dssp             --SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-------GGG----TT-EEEEEE
T ss_pred             CcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccCCCcceEEec------CHhhccCCCCcEeEEEe
Confidence            4578999999999999976 45688999999999999999842     22 222222      24555545689999999


Q ss_pred             ccccccC---ChhHHHHHHHHhhcCCCeEEEE
Q 037961          106 ASALHWF---DLPQFYKQVKWVLKKPSGVIAA  134 (262)
Q Consensus       106 ~~~~~~~---d~~~~l~~~~r~Lk~pgG~l~i  134 (262)
                      -+++.|+   |...+++.|...|+ |||.+++
T Consensus       129 QW~lghLTD~dlv~fL~RCk~~L~-~~G~Ivv  159 (218)
T PF05891_consen  129 QWCLGHLTDEDLVAFLKRCKQALK-PNGVIVV  159 (218)
T ss_dssp             ES-GGGS-HHHHHHHHHHHHHHEE-EEEEEEE
T ss_pred             hHhhccCCHHHHHHHHHHHHHhCc-CCcEEEE
Confidence            9999999   45569999999999 9999998

; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=99.02  E-value=3.9e-09  Score=89.61  Aligned_cols=100  Identities=16%  Similarity=0.160  Sum_probs=72.9

Q ss_pred             CCCCeEEEEcCcccHhHHHHHhh---CCeEEEEcCCHHHHHHHhcC------CCceEEeCCCCchhhhhhccCCCCceee
Q 037961           32 PKRNLAWDVGTRSGQAAASLAQI---YQHVIATDTSPKQLKFAIKL------PNIRYQLTPTMSITELEQNVATQSSVDL  102 (262)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~D~  102 (262)
                      .++.+|||+|||+|..|..++..   ...|+++|+++.+++.++++      .++.+...|      +..++...++||.
T Consensus        70 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D------~~~~~~~~~~fD~  143 (264)
T TIGR00446        70 DPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFD------GRVFGAAVPKFDA  143 (264)
T ss_pred             CCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCC------HHHhhhhccCCCE
Confidence            46789999999999999998875   34899999999999988753      345666554      4444334557999


Q ss_pred             EEEccccc--------------cC---------ChhHHHHHHHHhhcCCCeEEEEEecC
Q 037961          103 VTIASALH--------------WF---------DLPQFYKQVKWVLKKPSGVIAAWTYT  138 (262)
Q Consensus       103 V~~~~~~~--------------~~---------d~~~~l~~~~r~Lk~pgG~l~i~~~~  138 (262)
                      |++.-..-              |.         ...++++.+.++|| |||+|+..+++
T Consensus       144 Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lk-pgG~lvYstcs  201 (264)
T TIGR00446       144 ILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALK-PGGVLVYSTCS  201 (264)
T ss_pred             EEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcC-CCCEEEEEeCC
Confidence            99743211              11         12348899999999 99999876554

>PRK14903 16S rRNA methyltransferase B; Provisional

Probab=99.02  E-value=2.3e-09  Score=97.09  Aligned_cols=100  Identities=16%  Similarity=0.186  Sum_probs=74.2

Q ss_pred             CCCCeEEEEcCcccHhHHHHHhh---CCeEEEEcCCHHHHHHHhcC------CCceEEeCCCCchhhhhhcc-CCCCcee
Q 037961           32 PKRNLAWDVGTRSGQAAASLAQI---YQHVIATDTSPKQLKFAIKL------PNIRYQLTPTMSITELEQNV-ATQSSVD  101 (262)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~~~~~~-~~~~~~D  101 (262)
                      .++.+|||+|||+|..|..++..   ..+|+++|+|+.+++.++++      .++.+..+|      +..++ ..+++||
T Consensus       236 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~D------a~~l~~~~~~~fD  309 (431)
T PRK14903        236 EPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIAD------AERLTEYVQDTFD  309 (431)
T ss_pred             CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECc------hhhhhhhhhccCC
Confidence            46788999999999999999875   46899999999999998753      345666655      33332 2356899


Q ss_pred             eEEEcccc---ccC--C------------------hhHHHHHHHHhhcCCCeEEEEEecC
Q 037961          102 LVTIASAL---HWF--D------------------LPQFYKQVKWVLKKPSGVIAAWTYT  138 (262)
Q Consensus       102 ~V~~~~~~---~~~--d------------------~~~~l~~~~r~Lk~pgG~l~i~~~~  138 (262)
                      .|++.-.+   ..+  +                  ..+++.++.++|| |||.++..+++
T Consensus       310 ~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~Lk-pGG~LvYsTCs  368 (431)
T PRK14903        310 RILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLE-KGGILLYSTCT  368 (431)
T ss_pred             EEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcC-CCCEEEEEECC
Confidence            99974322   221  1                  2346889999999 99999886665

>PRK14901 16S rRNA methyltransferase B; Provisional

Probab=99.02  E-value=2.4e-09  Score=97.22  Aligned_cols=100  Identities=19%  Similarity=0.267  Sum_probs=74.6

Q ss_pred             CCCCeEEEEcCcccHhHHHHHhh---CCeEEEEcCCHHHHHHHhcC------CCceEEeCCCCchhhhhhcc----CCCC
Q 037961           32 PKRNLAWDVGTRSGQAAASLAQI---YQHVIATDTSPKQLKFAIKL------PNIRYQLTPTMSITELEQNV----ATQS   98 (262)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~~~~~~----~~~~   98 (262)
                      .++.+|||+|||+|..|..++..   ..+|+++|+++.+++.++++      .++.+..+|      +..++    ...+
T Consensus       251 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D------~~~~~~~~~~~~~  324 (434)
T PRK14901        251 QPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAAD------SRNLLELKPQWRG  324 (434)
T ss_pred             CCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCC------hhhcccccccccc
Confidence            46789999999999999999875   25899999999999988752      356777665      33332    3357


Q ss_pred             ceeeEEEccc------cc------cC-C----------hhHHHHHHHHhhcCCCeEEEEEecC
Q 037961           99 SVDLVTIASA------LH------WF-D----------LPQFYKQVKWVLKKPSGVIAAWTYT  138 (262)
Q Consensus        99 ~~D~V~~~~~------~~------~~-d----------~~~~l~~~~r~Lk~pgG~l~i~~~~  138 (262)
                      +||.|++.-.      ++      |. .          ..+++.++.++|| |||+|+..+++
T Consensus       325 ~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk-pgG~lvystcs  386 (434)
T PRK14901        325 YFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLK-PGGTLVYATCT  386 (434)
T ss_pred             cCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcC-CCCEEEEEeCC
Confidence            8999997422      22      22 1          3468999999999 99999876654

>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed

Probab=99.01  E-value=4.7e-09  Score=91.40  Aligned_cols=118  Identities=12%  Similarity=0.116  Sum_probs=76.4

Q ss_pred             HHHHHHHhhCC--CCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhcC------CCceEEeCCCCchhhhhhc
Q 037961           22 ELFKLIASKTP--KRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKL------PNIRYQLTPTMSITELEQN   93 (262)
Q Consensus        22 ~~~~~l~~~~~--~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~~~~~   93 (262)
                      .+++.+.....  ++.+|||+|||+|.++..++..+.+|+|+|+|+.+++.|+++      .++++..+|      +.++
T Consensus       160 ~l~~~v~~~l~~~~~~~VLDl~cG~G~~sl~la~~~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D------~~~~  233 (315)
T PRK03522        160 QLYATARDWVRELPPRSMWDLFCGVGGFGLHCATPGMQLTGIEISAEAIACAKQSAAELGLTNVQFQALD------STQF  233 (315)
T ss_pred             HHHHHHHHHHHhcCCCEEEEccCCCCHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcC------HHHH
Confidence            34444444332  457899999999999999999999999999999999998753      467888776      3332


Q ss_pred             cC-CCCceeeEEEccccccCChhHHHHHHHHhhcCCCeEEEEEecCCCcccHHHHHh
Q 037961           94 VA-TQSSVDLVTIASALHWFDLPQFYKQVKWVLKKPSGVIAAWTYTMPEINESVGAV  149 (262)
Q Consensus        94 ~~-~~~~~D~V~~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~~~~~~~~~~~~~  149 (262)
                      .. ..++||+|+++..-  -.....+.+...-++ |++.+++ .+++..+.+.+..+
T Consensus       234 ~~~~~~~~D~Vv~dPPr--~G~~~~~~~~l~~~~-~~~ivyv-sc~p~t~~rd~~~l  286 (315)
T PRK03522        234 ATAQGEVPDLVLVNPPR--RGIGKELCDYLSQMA-PRFILYS-SCNAQTMAKDLAHL  286 (315)
T ss_pred             HHhcCCCCeEEEECCCC--CCccHHHHHHHHHcC-CCeEEEE-ECCcccchhHHhhc
Confidence            21 23579999987552  121222223333456 7776666 44444444444433

>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes

Probab=99.00  E-value=2.4e-09  Score=88.11  Aligned_cols=108  Identities=19%  Similarity=0.133  Sum_probs=77.9

Q ss_pred             hHHHHHHHHhh-CCCCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhc-C-----------------CCceEE
Q 037961           20 PKELFKLIASK-TPKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIK-L-----------------PNIRYQ   80 (262)
Q Consensus        20 p~~~~~~l~~~-~~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~-~-----------------~~~~~~   80 (262)
                      .+.+.+++... .+++.+||..|||.|.-...|+.+|.+|+|+|+|+..++.+.+ .                 .+|++.
T Consensus        23 ~p~L~~~~~~l~~~~~~rvLvPgCG~g~D~~~La~~G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~  102 (218)
T PF05724_consen   23 NPALVEYLDSLALKPGGRVLVPGCGKGYDMLWLAEQGHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIY  102 (218)
T ss_dssp             THHHHHHHHHHTTSTSEEEEETTTTTSCHHHHHHHTTEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEE
T ss_pred             CHHHHHHHHhcCCCCCCeEEEeCCCChHHHHHHHHCCCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEE
Confidence            34555555542 3566789999999999999999999999999999999999832 1                 234566


Q ss_pred             eCCCCchhhhhhccC-CCCceeeEEEccccccCC---hhHHHHHHHHhhcCCCeEEEE
Q 037961           81 LTPTMSITELEQNVA-TQSSVDLVTIASALHWFD---LPQFYKQVKWVLKKPSGVIAA  134 (262)
Q Consensus        81 ~~~~~~~~~~~~~~~-~~~~~D~V~~~~~~~~~d---~~~~l~~~~r~Lk~pgG~l~i  134 (262)
                      ++|      +-+++. ..++||+|+=..+++-++   .++..+.+.++|+ |||.+++
T Consensus       103 ~gD------fF~l~~~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~-p~g~~lL  153 (218)
T PF05724_consen  103 CGD------FFELPPEDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLK-PGGRGLL  153 (218)
T ss_dssp             ES-------TTTGGGSCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEE-EEEEEEE
T ss_pred             Ecc------cccCChhhcCCceEEEEecccccCCHHHHHHHHHHHHHHhC-CCCcEEE
Confidence            665      322221 235799999777777663   4558999999999 9999443

Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.

>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional

Probab=98.98  E-value=7.3e-09  Score=84.02  Aligned_cols=115  Identities=12%  Similarity=-0.041  Sum_probs=75.8

Q ss_pred             hCCCChHHHHHHHHhhC---CCCCeEEEEcCcccHhHHHHHhh-CCeEEEEcCCHHHHHHHhcC------CCceEEeCCC
Q 037961           15 ARPNYPKELFKLIASKT---PKRNLAWDVGTRSGQAAASLAQI-YQHVIATDTSPKQLKFAIKL------PNIRYQLTPT   84 (262)
Q Consensus        15 ~rp~yp~~~~~~l~~~~---~~~~~vlDvGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~------~~~~~~~~~~   84 (262)
                      +||.- +.+.+.+.+.+   .++.+|||+|||+|.++..++.+ ..+|+++|.++..++.++++      .++.++.+| 
T Consensus        33 ~Rp~~-d~v~e~l~~~l~~~~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D-  110 (199)
T PRK10909         33 LRPTT-DRVRETLFNWLAPVIVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTN-  110 (199)
T ss_pred             cCcCC-HHHHHHHHHHHhhhcCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEch-
Confidence            36655 44433333322   34578999999999999875544 56999999999999988753      356777665 


Q ss_pred             Cchhhhhh-ccCCCCceeeEEEccccccCChhHHHHHHHH--hhcCCCeEEEEEec
Q 037961           85 MSITELEQ-NVATQSSVDLVTIASALHWFDLPQFYKQVKW--VLKKPSGVIAAWTY  137 (262)
Q Consensus        85 ~~~~~~~~-~~~~~~~~D~V~~~~~~~~~d~~~~l~~~~r--~Lk~pgG~l~i~~~  137 (262)
                           +.. ++....+||+|+++..++.--.+.+++.+..  +|+ |+|.+++-..
T Consensus       111 -----~~~~l~~~~~~fDlV~~DPPy~~g~~~~~l~~l~~~~~l~-~~~iv~ve~~  160 (199)
T PRK10909        111 -----ALSFLAQPGTPHNVVFVDPPFRKGLLEETINLLEDNGWLA-DEALIYVESE  160 (199)
T ss_pred             -----HHHHHhhcCCCceEEEECCCCCCChHHHHHHHHHHCCCcC-CCcEEEEEec
Confidence                 222 2112457999999988643333345555544  368 8888887443

>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.97  E-value=5.2e-09  Score=87.66  Aligned_cols=95  Identities=19%  Similarity=0.214  Sum_probs=74.8

Q ss_pred             CCCCeEEEEcCcccHhHHHHHhh--CCeEEEEcCCHHHHHHHhcCCCceEEeCCCCchhhhhhccCCCCceeeEEEcccc
Q 037961           32 PKRNLAWDVGTRSGQAAASLAQI--YQHVIATDTSPKQLKFAIKLPNIRYQLTPTMSITELEQNVATQSSVDLVTIASAL  109 (262)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~  109 (262)
                      .+..+|+|||+|+|.++..+++.  ..+++..|. |..++.+++..++++..+|      +- -++|.  +|+|+..+.+
T Consensus        99 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~~~rv~~~~gd------~f-~~~P~--~D~~~l~~vL  168 (241)
T PF00891_consen   99 SGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKEADRVEFVPGD------FF-DPLPV--ADVYLLRHVL  168 (241)
T ss_dssp             TTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHHTTTEEEEES-------TT-TCCSS--ESEEEEESSG
T ss_pred             cCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccccccccccccc------HH-hhhcc--ccceeeehhh
Confidence            45678999999999999999886  568999999 7888888887889999876      22 22344  9999999999


Q ss_pred             ccCChh---HHHHHHHHhhcCCC--eEEEEEec
Q 037961          110 HWFDLP---QFYKQVKWVLKKPS--GVIAAWTY  137 (262)
Q Consensus       110 ~~~d~~---~~l~~~~r~Lk~pg--G~l~i~~~  137 (262)
                      |..+.+   ++++++++.|+ ||  |+|+|...
T Consensus       169 h~~~d~~~~~iL~~~~~al~-pg~~g~llI~e~  200 (241)
T PF00891_consen  169 HDWSDEDCVKILRNAAAALK-PGKDGRLLIIEM  200 (241)
T ss_dssp             GGS-HHHHHHHHHHHHHHSE-ECTTEEEEEEEE
T ss_pred             hhcchHHHHHHHHHHHHHhC-CCCCCeEEEEee
Confidence            977333   38999999999 99  99998544

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=98.96  E-value=7.5e-09  Score=86.29  Aligned_cols=98  Identities=16%  Similarity=0.254  Sum_probs=70.8

Q ss_pred             CCCCeEEEEcCcccHhHHHHHhh---CCeEEEEcCCHHHHHHHhcC-------CCceEEeCCCCchhhhhhcc--CCCCc
Q 037961           32 PKRNLAWDVGTRSGQAAASLAQI---YQHVIATDTSPKQLKFAIKL-------PNIRYQLTPTMSITELEQNV--ATQSS   99 (262)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~~~~~~--~~~~~   99 (262)
                      .+..+|||+|||+|..+..++..   ..+|+++|+++++++.|+++       .+++++.++...  .+..+.  .+.++
T Consensus        67 ~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~--~L~~l~~~~~~~~  144 (234)
T PLN02781         67 MNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALS--ALDQLLNNDPKPE  144 (234)
T ss_pred             hCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHH--HHHHHHhCCCCCC
Confidence            35678999999999999888764   45899999999999999863       467788776211  011111  12568


Q ss_pred             eeeEEEccccccCChhHHHHHHHHhhcCCCeEEEE
Q 037961          100 VDLVTIASALHWFDLPQFYKQVKWVLKKPSGVIAA  134 (262)
Q Consensus       100 ~D~V~~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i  134 (262)
                      ||+|++...-  -.....+..+.++|+ |||.+++
T Consensus       145 fD~VfiDa~k--~~y~~~~~~~~~ll~-~GG~ii~  176 (234)
T PLN02781        145 FDFAFVDADK--PNYVHFHEQLLKLVK-VGGIIAF  176 (234)
T ss_pred             CCEEEECCCH--HHHHHHHHHHHHhcC-CCeEEEE
Confidence            9999875221  023457899999999 9999887

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=98.95  E-value=6.1e-09  Score=94.38  Aligned_cols=102  Identities=13%  Similarity=0.220  Sum_probs=71.7

Q ss_pred             CCCCeEEEEcCcccHhHHHHHhh--CCeEEEEcCCHHHHHHHhcC---CCc--eEEeCCCCchhhhhhccC--CCCceee
Q 037961           32 PKRNLAWDVGTRSGQAAASLAQI--YQHVIATDTSPKQLKFAIKL---PNI--RYQLTPTMSITELEQNVA--TQSSVDL  102 (262)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~---~~~--~~~~~~~~~~~~~~~~~~--~~~~~D~  102 (262)
                      .++.+|||+|||+|..|..++..  ..+|+++|+++.+++.++++   .++  .+...+    +|....+.  +.++||.
T Consensus       237 ~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~----~d~~~~~~~~~~~~fD~  312 (426)
T TIGR00563       237 QNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKD----GDGRGPSQWAENEQFDR  312 (426)
T ss_pred             CCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEec----cccccccccccccccCE
Confidence            36789999999999999999886  36899999999999988753   222  221111    22222221  4578999


Q ss_pred             EEEcc------ccc------cC-C----------hhHHHHHHHHhhcCCCeEEEEEecC
Q 037961          103 VTIAS------ALH------WF-D----------LPQFYKQVKWVLKKPSGVIAAWTYT  138 (262)
Q Consensus       103 V~~~~------~~~------~~-d----------~~~~l~~~~r~Lk~pgG~l~i~~~~  138 (262)
                      |++.-      .++      |. +          ..+++.++.++|| |||+|+..+++
T Consensus       313 VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~Lk-pgG~lvystcs  370 (426)
T TIGR00563       313 ILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLK-TGGTLVYATCS  370 (426)
T ss_pred             EEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcC-CCcEEEEEeCC
Confidence            99631      222      22 2          2458999999999 99999986665

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=98.94  E-value=4.9e-09  Score=100.42  Aligned_cols=101  Identities=19%  Similarity=0.169  Sum_probs=74.7

Q ss_pred             CCCCeEEEEcCcccHhHHHHHhhCC-eEEEEcCCHHHHHHHhcC--------CCceEEeCCCCchhhhhhccCCCCceee
Q 037961           32 PKRNLAWDVGTRSGQAAASLAQIYQ-HVIATDTSPKQLKFAIKL--------PNIRYQLTPTMSITELEQNVATQSSVDL  102 (262)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~D~  102 (262)
                      .++.+|||+|||+|.++..++..|+ +|+++|+|+.+++.|+++        .+++++.+|.+..  ...   ..++||+
T Consensus       537 ~~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~--l~~---~~~~fDl  611 (702)
T PRK11783        537 AKGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAW--LKE---AREQFDL  611 (702)
T ss_pred             cCCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHH--HHH---cCCCcCE
Confidence            3567899999999999999998876 699999999999999863        2467777762110  111   1468999


Q ss_pred             EEEccccc-----------cC-ChhHHHHHHHHhhcCCCeEEEEEecC
Q 037961          103 VTIASALH-----------WF-DLPQFYKQVKWVLKKPSGVIAAWTYT  138 (262)
Q Consensus       103 V~~~~~~~-----------~~-d~~~~l~~~~r~Lk~pgG~l~i~~~~  138 (262)
                      |++.....           .. +...++..+.++|+ |||.|++.+..
T Consensus       612 IilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~-~gG~l~~~~~~  658 (702)
T PRK11783        612 IFIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLR-PGGTLYFSNNK  658 (702)
T ss_pred             EEECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcC-CCCEEEEEeCC
Confidence            99864421           11 34557888999999 99999885543

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=98.94  E-value=6.3e-09  Score=94.81  Aligned_cols=99  Identities=17%  Similarity=0.194  Sum_probs=73.0

Q ss_pred             CCCCeEEEEcCcccHhHHHHHhh---CCeEEEEcCCHHHHHHHhcC------CCceEEeCCCCchhhhhhcc--CCCCce
Q 037961           32 PKRNLAWDVGTRSGQAAASLAQI---YQHVIATDTSPKQLKFAIKL------PNIRYQLTPTMSITELEQNV--ATQSSV  100 (262)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~~~~~~--~~~~~~  100 (262)
                      .++.+|||+|||+|..+..++..   ..+|+++|+++.+++.++++      .++.+..+|      +....  ++ ++|
T Consensus       249 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D------~~~~~~~~~-~~f  321 (444)
T PRK14902        249 KGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALD------ARKVHEKFA-EKF  321 (444)
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCC------cccccchhc-ccC
Confidence            46688999999999999999875   36899999999999988752      356777665      32221  22 679


Q ss_pred             eeEEEccccc------------cC-C----------hhHHHHHHHHhhcCCCeEEEEEecC
Q 037961          101 DLVTIASALH------------WF-D----------LPQFYKQVKWVLKKPSGVIAAWTYT  138 (262)
Q Consensus       101 D~V~~~~~~~------------~~-d----------~~~~l~~~~r~Lk~pgG~l~i~~~~  138 (262)
                      |+|++.....            |. .          ...+++.+.++|| |||+|+..++.
T Consensus       322 D~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~Lk-pGG~lvystcs  381 (444)
T PRK14902        322 DKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLK-KGGILVYSTCT  381 (444)
T ss_pred             CEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcC-CCCEEEEEcCC
Confidence            9999864321            22 1          1347899999999 99999875544

>TIGR00478 tly hemolysin TlyA family protein

Probab=98.91  E-value=1.2e-08  Score=84.28  Aligned_cols=93  Identities=15%  Similarity=0.167  Sum_probs=63.8

Q ss_pred             CCCeEEEEcCcccHhHHHHHhhCC-eEEEEcCCHHHHHH-HhcCCCceEEeCCCCchhhhhhccCCCCceeeEEEccccc
Q 037961           33 KRNLAWDVGTRSGQAAASLAQIYQ-HVIATDTSPKQLKF-AIKLPNIRYQLTPTMSITELEQNVATQSSVDLVTIASALH  110 (262)
Q Consensus        33 ~~~~vlDvGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~-a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~~  110 (262)
                      ++.+|||+|||||.+|..+++.|+ +|+|+|+++.|+.. .++.+++......+...-+.++....-..+|+++++..  
T Consensus        75 ~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~~~~~v~~~~~~ni~~~~~~~~~~d~~~~DvsfiS~~--  152 (228)
T TIGR00478        75 KNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLRQDERVKVLERTNIRYVTPADIFPDFATFDVSFISLI--  152 (228)
T ss_pred             CCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHhcCCCeeEeecCCcccCCHhHcCCCceeeeEEEeehH--
Confidence            667899999999999999999965 79999999988875 66666654333321111122223223346777665543  


Q ss_pred             cCChhHHHHHHHHhhcCCCeEEEE
Q 037961          111 WFDLPQFYKQVKWVLKKPSGVIAA  134 (262)
Q Consensus       111 ~~d~~~~l~~~~r~Lk~pgG~l~i  134 (262)
                           ..+..+.++|+ | |.+++
T Consensus       153 -----~~l~~i~~~l~-~-~~~~~  169 (228)
T TIGR00478       153 -----SILPELDLLLN-P-NDLTL  169 (228)
T ss_pred             -----hHHHHHHHHhC-c-CeEEE
Confidence                 35889999999 8 76654

Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).

>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2

Probab=98.90  E-value=1.6e-08  Score=81.86  Aligned_cols=100  Identities=25%  Similarity=0.347  Sum_probs=72.4

Q ss_pred             CeEEEEcCcccHhHHHHHhh--CCeEEEEcCCHHHHHHHhc------CCCceEEeCCCCchhhhhhccCCCCceeeEEEc
Q 037961           35 NLAWDVGTRSGQAAASLAQI--YQHVIATDTSPKQLKFAIK------LPNIRYQLTPTMSITELEQNVATQSSVDLVTIA  106 (262)
Q Consensus        35 ~~vlDvGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~  106 (262)
                      ..+||||||.|.+...+|..  ...++|+|++...+..+.+      ..|+.++.++....  +.. -++++++|.|..+
T Consensus        19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~--l~~-~~~~~~v~~i~i~   95 (195)
T PF02390_consen   19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDAREL--LRR-LFPPGSVDRIYIN   95 (195)
T ss_dssp             EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTH--HHH-HSTTTSEEEEEEE
T ss_pred             CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHH--Hhh-cccCCchheEEEe
Confidence            38899999999999999986  5689999999999987753      48999999872110  122 2467899999999


Q ss_pred             cccccCC---------hhHHHHHHHHhhcCCCeEEEEEecC
Q 037961          107 SALHWFD---------LPQFYKQVKWVLKKPSGVIAAWTYT  138 (262)
Q Consensus       107 ~~~~~~d---------~~~~l~~~~r~Lk~pgG~l~i~~~~  138 (262)
                      +.=.|..         ...+++.+.++|+ |||.|.+.+-.
T Consensus        96 FPDPWpK~rH~krRl~~~~fl~~~~~~L~-~gG~l~~~TD~  135 (195)
T PF02390_consen   96 FPDPWPKKRHHKRRLVNPEFLELLARVLK-PGGELYFATDV  135 (195)
T ss_dssp             S-----SGGGGGGSTTSHHHHHHHHHHEE-EEEEEEEEES-
T ss_pred             CCCCCcccchhhhhcCCchHHHHHHHHcC-CCCEEEEEeCC
Confidence            9988883         2338999999999 99999886644

1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....

>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed

Probab=98.90  E-value=6.6e-09  Score=88.62  Aligned_cols=84  Identities=10%  Similarity=0.037  Sum_probs=64.4

Q ss_pred             hHHHHHHHHhhC--CCCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhcC---CCceEEeCCCCchhhhhhcc
Q 037961           20 PKELFKLIASKT--PKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKL---PNIRYQLTPTMSITELEQNV   94 (262)
Q Consensus        20 p~~~~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~~   94 (262)
                      .+.+.+.+....  .++..|||+|||+|.+|..+++++.+|+|+|+++.|++.+++.   ++++++.+|      +..++
T Consensus        27 ~~~i~~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~~~v~avE~d~~~~~~~~~~~~~~~v~~i~~D------~~~~~  100 (272)
T PRK00274         27 DENILDKIVDAAGPQPGDNVLEIGPGLGALTEPLLERAAKVTAVEIDRDLAPILAETFAEDNLTIIEGD------ALKVD  100 (272)
T ss_pred             CHHHHHHHHHhcCCCCcCeEEEeCCCccHHHHHHHHhCCcEEEEECCHHHHHHHHHhhccCceEEEECh------hhcCC
Confidence            456677776654  4678899999999999999999988999999999999999864   477888766      44443


Q ss_pred             CCCCceeeEEEcccc
Q 037961           95 ATQSSVDLVTIASAL  109 (262)
Q Consensus        95 ~~~~~~D~V~~~~~~  109 (262)
                      +++-.+|.|+++...
T Consensus       101 ~~~~~~~~vv~NlPY  115 (272)
T PRK00274        101 LSELQPLKVVANLPY  115 (272)
T ss_pred             HHHcCcceEEEeCCc
Confidence            332225888888664

>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

Probab=98.87  E-value=2.4e-08  Score=85.37  Aligned_cols=121  Identities=25%  Similarity=0.271  Sum_probs=77.6

Q ss_pred             HHHHHHHHhhCCCCC-eEEEEcCcccHhHHHHHhhCC--eEEEEcCCHHHHHHHhcC---CC---ceEEeCCCCchhhhh
Q 037961           21 KELFKLIASKTPKRN-LAWDVGTRSGQAAASLAQIYQ--HVIATDTSPKQLKFAIKL---PN---IRYQLTPTMSITELE   91 (262)
Q Consensus        21 ~~~~~~l~~~~~~~~-~vlDvGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~---~~---~~~~~~~~~~~~~~~   91 (262)
                      ..+++.+........ +|||+|||+|..+..++..+.  +|+|+|+|+..++.|+++   .+   +.++.++-     ++
T Consensus        97 e~Lve~~l~~~~~~~~~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dl-----f~  171 (280)
T COG2890          97 ELLVEAALALLLQLDKRILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDL-----FE  171 (280)
T ss_pred             HHHHHHHHHhhhhcCCcEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeec-----cc
Confidence            345555443333222 799999999999999999865  999999999999999863   22   22333220     11


Q ss_pred             hccCCCCceeeEEEccccc-----cC-------C--------------hhHHHHHHHHhhcCCCeEEEEEe-cCCCcccH
Q 037961           92 QNVATQSSVDLVTIASALH-----WF-------D--------------LPQFYKQVKWVLKKPSGVIAAWT-YTMPEINE  144 (262)
Q Consensus        92 ~~~~~~~~~D~V~~~~~~~-----~~-------d--------------~~~~l~~~~r~Lk~pgG~l~i~~-~~~~~~~~  144 (262)
                      .   -.++||+|++|...=     ..       +              ...++.++.+.|+ |||.+++-. +..   .+
T Consensus       172 ~---~~~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~-~~g~l~le~g~~q---~~  244 (280)
T COG2890         172 P---LRGKFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILK-PGGVLILEIGLTQ---GE  244 (280)
T ss_pred             c---cCCceeEEEeCCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcC-CCcEEEEEECCCc---HH
Confidence            1   234899999974421     00       1              2236778899999 999998832 222   24


Q ss_pred             HHHHhhccc
Q 037961          145 SVGAVFKPF  153 (262)
Q Consensus       145 ~~~~~~~~~  153 (262)
                      .+.+++.+.
T Consensus       245 ~v~~~~~~~  253 (280)
T COG2890         245 AVKALFEDT  253 (280)
T ss_pred             HHHHHHHhc
Confidence            455555443

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=98.86  E-value=2.2e-08  Score=82.47  Aligned_cols=114  Identities=24%  Similarity=0.286  Sum_probs=85.7

Q ss_pred             hCCCChHHHHHHHHhh-CCCCCeEEEEcCcccHhHHHHHhh---CCeEEEEcCCHHHHHHHhcC-------CCceEEeCC
Q 037961           15 ARPNYPKELFKLIASK-TPKRNLAWDVGTRSGQAAASLAQI---YQHVIATDTSPKQLKFAIKL-------PNIRYQLTP   83 (262)
Q Consensus        15 ~rp~yp~~~~~~l~~~-~~~~~~vlDvGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~   83 (262)
                      .++-||+...-.+... +.++.+|+|.|.|+|.+|..|+..   -.+|+..|+.++.++.|+++       .++.+..+|
T Consensus        75 tQiIyPKD~~~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~D  154 (256)
T COG2519          75 TQIIYPKDAGYIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGD  154 (256)
T ss_pred             CceecCCCHHHHHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEecc
Confidence            4456777654444332 469999999999999999999974   35899999999999999864       235555554


Q ss_pred             CCchhhhhhccCCCCceeeEEEccccccCChhHHHHHHHHhhcCCCeEEEEEecCCC
Q 037961           84 TMSITELEQNVATQSSVDLVTIASALHWFDLPQFYKQVKWVLKKPSGVIAAWTYTMP  140 (262)
Q Consensus        84 ~~~~~~~~~~~~~~~~~D~V~~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~~~~  140 (262)
                            +.+...++ .||.|+....    ||-.+++.+.++|+ |||.++++.....
T Consensus       155 ------v~~~~~~~-~vDav~LDmp----~PW~~le~~~~~Lk-pgg~~~~y~P~ve  199 (256)
T COG2519         155 ------VREGIDEE-DVDAVFLDLP----DPWNVLEHVSDALK-PGGVVVVYSPTVE  199 (256)
T ss_pred             ------cccccccc-ccCEEEEcCC----ChHHHHHHHHHHhC-CCcEEEEEcCCHH
Confidence                  43333333 8999996522    77789999999999 9999999876543

>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA

Probab=98.86  E-value=1e-08  Score=93.19  Aligned_cols=111  Identities=14%  Similarity=0.147  Sum_probs=77.4

Q ss_pred             ChHHHHHHHHhhC--CCCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhcC------CCceEEeCCCCchhhh
Q 037961           19 YPKELFKLIASKT--PKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKL------PNIRYQLTPTMSITEL   90 (262)
Q Consensus        19 yp~~~~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~~   90 (262)
                      ..+.+++.+....  .++.+|||+|||+|.++..+++.+.+|+|+|+++.|++.|+++      .+++++.+|..  ..+
T Consensus       276 ~~~~l~~~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~~~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~--~~l  353 (431)
T TIGR00479       276 QNEKLVDRALEALELQGEELVVDAYCGVGTFTLPLAKQAKSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLE--TVL  353 (431)
T ss_pred             HHHHHHHHHHHHhccCCCCEEEEcCCCcCHHHHHHHHhCCEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHH--HHH
Confidence            3455666666554  3567899999999999999999888999999999999998863      57888887610  011


Q ss_pred             hhccCCCCceeeEEEccccccCChhHHHHHHHHhhcCCCeEEEE
Q 037961           91 EQNVATQSSVDLVTIASALHWFDLPQFYKQVKWVLKKPSGVIAA  134 (262)
Q Consensus        91 ~~~~~~~~~~D~V~~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i  134 (262)
                      ..++..+.+||+|++...---+ ...+++.+.+ ++ |++.+++
T Consensus       354 ~~~~~~~~~~D~vi~dPPr~G~-~~~~l~~l~~-l~-~~~ivyv  394 (431)
T TIGR00479       354 PKQPWAGQIPDVLLLDPPRKGC-AAEVLRTIIE-LK-PERIVYV  394 (431)
T ss_pred             HHHHhcCCCCCEEEECcCCCCC-CHHHHHHHHh-cC-CCEEEEE
Confidence            2223345679999975542111 2345565554 78 8887666

This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.

>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional

Probab=98.85  E-value=1.5e-08  Score=85.77  Aligned_cols=84  Identities=13%  Similarity=0.109  Sum_probs=65.5

Q ss_pred             HHHHHHHHhhC--CCCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhcC----CCceEEeCCCCchhhhhhcc
Q 037961           21 KELFKLIASKT--PKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKL----PNIRYQLTPTMSITELEQNV   94 (262)
Q Consensus        21 ~~~~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~----~~~~~~~~~~~~~~~~~~~~   94 (262)
                      +.+.+.+....  .++.+|||+|||+|.+|..+++.+.+|+++|+++.|++.+++.    +++.++.+|      +..++
T Consensus        15 ~~~~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~~~~v~~vEid~~~~~~l~~~~~~~~~v~ii~~D------~~~~~   88 (258)
T PRK14896         15 DRVVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKRAKKVYAIELDPRLAEFLRDDEIAAGNVEIIEGD------ALKVD   88 (258)
T ss_pred             HHHHHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHhCCEEEEEECCHHHHHHHHHHhccCCCEEEEEec------cccCC
Confidence            44556666554  4678999999999999999999988999999999999998753    467777765      44444


Q ss_pred             CCCCceeeEEEccccccC
Q 037961           95 ATQSSVDLVTIASALHWF  112 (262)
Q Consensus        95 ~~~~~~D~V~~~~~~~~~  112 (262)
                      ++  .||.|+++...+..
T Consensus        89 ~~--~~d~Vv~NlPy~i~  104 (258)
T PRK14896         89 LP--EFNKVVSNLPYQIS  104 (258)
T ss_pred             ch--hceEEEEcCCcccC
Confidence            33  48999999887653

>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.83  E-value=1.4e-08  Score=82.11  Aligned_cols=95  Identities=24%  Similarity=0.337  Sum_probs=62.5

Q ss_pred             CCCeEEEEcCcccH----hHHHHHh---h----CCeEEEEcCCHHHHHHHhcC---------------------------
Q 037961           33 KRNLAWDVGTRSGQ----AAASLAQ---I----YQHVIATDTSPKQLKFAIKL---------------------------   74 (262)
Q Consensus        33 ~~~~vlDvGcG~G~----~~~~l~~---~----~~~v~~vD~s~~~~~~a~~~---------------------------   74 (262)
                      +.-+|+.+||+||.    +++.+..   .    ..+|+|+|+|+.+++.|++-                           
T Consensus        31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~  110 (196)
T PF01739_consen   31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY  110 (196)
T ss_dssp             S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred             CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence            45789999999995    3334444   1    24899999999999999851                           


Q ss_pred             -------CCceEEeCCCCchhhhhhccCCCCceeeEEEccccccCChh---HHHHHHHHhhcCCCeEEEE
Q 037961           75 -------PNIRYQLTPTMSITELEQNVATQSSVDLVTIASALHWFDLP---QFYKQVKWVLKKPSGVIAA  134 (262)
Q Consensus        75 -------~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~~~~d~~---~~l~~~~r~Lk~pgG~l~i  134 (262)
                             ..+.|...+      +-+.+.+.+.||+|+|.+++-++|.+   ++++.+.+.|+ |||.|++
T Consensus       111 ~v~~~lr~~V~F~~~N------L~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~-pgG~L~l  173 (196)
T PF01739_consen  111 RVKPELRKMVRFRRHN------LLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLK-PGGYLFL  173 (196)
T ss_dssp             TE-HHHHTTEEEEE--------TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEE-EEEEEEE
T ss_pred             eEChHHcCceEEEecc------cCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcC-CCCEEEE
Confidence                   234444433      33322356789999999999999654   49999999999 9999998

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.

>TIGR00755 ksgA dimethyladenosine transferase

Probab=98.83  E-value=3.7e-08  Score=83.20  Aligned_cols=83  Identities=12%  Similarity=0.125  Sum_probs=63.8

Q ss_pred             HHHHHHHHhhC--CCCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhcC----CCceEEeCCCCchhhhhhcc
Q 037961           21 KELFKLIASKT--PKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKL----PNIRYQLTPTMSITELEQNV   94 (262)
Q Consensus        21 ~~~~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~----~~~~~~~~~~~~~~~~~~~~   94 (262)
                      +.+.+.+.+..  .++.+|||+|||+|.+|..+++.+.+|+++|+++.|++.+++.    +++++..+|      +...+
T Consensus        15 ~~i~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~~~v~~iE~d~~~~~~l~~~~~~~~~v~v~~~D------~~~~~   88 (253)
T TIGR00755        15 ESVIQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRAKKVTAIEIDPRLAEILRKLLSLYERLEVIEGD------ALKVD   88 (253)
T ss_pred             HHHHHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhCCcEEEEECCHHHHHHHHHHhCcCCcEEEEECc------hhcCC
Confidence            45566666654  3678999999999999999999999999999999999988753    567777665      44443


Q ss_pred             CCCCcee---eEEEcccccc
Q 037961           95 ATQSSVD---LVTIASALHW  111 (262)
Q Consensus        95 ~~~~~~D---~V~~~~~~~~  111 (262)
                      ++  ++|   +|+++...|+
T Consensus        89 ~~--~~d~~~~vvsNlPy~i  106 (253)
T TIGR00755        89 LP--DFPKQLKVVSNLPYNI  106 (253)
T ss_pred             hh--HcCCcceEEEcCChhh
Confidence            32  456   8888877664

Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase

>PRK10611 chemotaxis methyltransferase CheR; Provisional

Probab=98.83  E-value=3.7e-08  Score=84.06  Aligned_cols=100  Identities=19%  Similarity=0.255  Sum_probs=69.5

Q ss_pred             CCeEEEEcCcccH----hHHHHHhh------CCeEEEEcCCHHHHHHHhcC--C-----C------------------ce
Q 037961           34 RNLAWDVGTRSGQ----AAASLAQI------YQHVIATDTSPKQLKFAIKL--P-----N------------------IR   78 (262)
Q Consensus        34 ~~~vlDvGcG~G~----~~~~l~~~------~~~v~~vD~s~~~~~~a~~~--~-----~------------------~~   78 (262)
                      .-+|+..||+||.    +++.+.+.      ..+|+|+|+|+.+++.|++-  +     +                  -.
T Consensus       116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~  195 (287)
T PRK10611        116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL  195 (287)
T ss_pred             CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence            3689999999995    33344442      24799999999999999852  1     0                  01


Q ss_pred             EEeCC------CCchhhhhhccC-CCCceeeEEEccccccCC---hhHHHHHHHHhhcCCCeEEEE
Q 037961           79 YQLTP------TMSITELEQNVA-TQSSVDLVTIASALHWFD---LPQFYKQVKWVLKKPSGVIAA  134 (262)
Q Consensus        79 ~~~~~------~~~~~~~~~~~~-~~~~~D~V~~~~~~~~~d---~~~~l~~~~r~Lk~pgG~l~i  134 (262)
                      +...+      .+...++.+.++ +.+.||+|+|.+++.+++   ..++++.+.+.|+ |||.|++
T Consensus       196 ~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~-pgG~L~l  260 (287)
T PRK10611        196 VRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLK-PDGLLFA  260 (287)
T ss_pred             EEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhC-CCcEEEE
Confidence            22222      122234433222 257899999999999994   3459999999999 9999877

>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases

Probab=98.81  E-value=1.9e-08  Score=80.06  Aligned_cols=99  Identities=17%  Similarity=0.232  Sum_probs=64.0

Q ss_pred             CCCCeEEEEcCcccHhHHHHHhh--CCeEEEEcCCHHHHHHHhcC---------CCceEEeCCCCchhhhhhccCCCCce
Q 037961           32 PKRNLAWDVGTRSGQAAASLAQI--YQHVIATDTSPKQLKFAIKL---------PNIRYQLTPTMSITELEQNVATQSSV  100 (262)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (262)
                      .++.+|||+|||+|..+..++..  ..+|+.+|.++ .++..+.+         .++.+...+ |.. +.....+...+|
T Consensus        44 ~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~-Wg~-~~~~~~~~~~~~  120 (173)
T PF10294_consen   44 FRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLD-WGD-ELDSDLLEPHSF  120 (173)
T ss_dssp             TTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE---TTS--HHHHHHS-SSB
T ss_pred             cCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEE-ecC-cccccccccccC
Confidence            36789999999999999999988  67999999998 77766532         334444443 211 111111245689


Q ss_pred             eeEEEccccccC-ChhHHHHHHHHhhcCCCeEEEE
Q 037961          101 DLVTIASALHWF-DLPQFYKQVKWVLKKPSGVIAA  134 (262)
Q Consensus       101 D~V~~~~~~~~~-d~~~~l~~~~r~Lk~pgG~l~i  134 (262)
                      |+|+++-+++.- ..+.+++-+.++|+ |+|.+++
T Consensus       121 D~IlasDv~Y~~~~~~~L~~tl~~ll~-~~~~vl~  154 (173)
T PF10294_consen  121 DVILASDVLYDEELFEPLVRTLKRLLK-PNGKVLL  154 (173)
T ss_dssp             SEEEEES--S-GGGHHHHHHHHHHHBT-T-TTEEE
T ss_pred             CEEEEecccchHHHHHHHHHHHHHHhC-CCCEEEE
Confidence            999999999987 67779999999999 8888665

They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.

>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []

Probab=98.81  E-value=1.2e-08  Score=92.35  Aligned_cols=119  Identities=18%  Similarity=0.240  Sum_probs=79.3

Q ss_pred             hhhHHHHHHHHhhCCCChHHHHHHHHhhCC------CCCeEEEEcCcccHhHHHHHhhC------CeEEEEcCCHHHHHH
Q 037961            3 ELFIKQANLYAVARPNYPKELFKLIASKTP------KRNLAWDVGTRSGQAAASLAQIY------QHVIATDTSPKQLKF   70 (262)
Q Consensus         3 ~~F~~~a~~Y~~~rp~yp~~~~~~l~~~~~------~~~~vlDvGcG~G~~~~~l~~~~------~~v~~vD~s~~~~~~   70 (262)
                      +.|+++...|+.++    +.+...|.+...      ++.+|+|||||+|.++...++.+      .+|++||-|+.++..
T Consensus       154 e~fE~D~vKY~~Ye----~AI~~al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~  229 (448)
T PF05185_consen  154 EVFEKDPVKYDQYE----RAIEEALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVT  229 (448)
T ss_dssp             HHHCC-HHHHHHHH----HHHHHHHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHH
T ss_pred             hhHhcCHHHHHHHH----HHHHHHHHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHH
Confidence            56888999998874    455555555543      25789999999999998776654      589999999987765


Q ss_pred             Hhc----C---CCceEEeCCCCchhhhhhccCCCCceeeEEEccccccCC---hhHHHHHHHHhhcCCCeEEE
Q 037961           71 AIK----L---PNIRYQLTPTMSITELEQNVATQSSVDLVTIASALHWFD---LPQFYKQVKWVLKKPSGVIA  133 (262)
Q Consensus        71 a~~----~---~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~~~~d---~~~~l~~~~r~Lk~pgG~l~  133 (262)
                      +++    .   ..|+++.++      .+++..+ .++|+|++-..=...+   ....+..+.|.|| |||.++
T Consensus       230 l~~~v~~n~w~~~V~vi~~d------~r~v~lp-ekvDIIVSElLGsfg~nEl~pE~Lda~~rfLk-p~Gi~I  294 (448)
T PF05185_consen  230 LQKRVNANGWGDKVTVIHGD------MREVELP-EKVDIIVSELLGSFGDNELSPECLDAADRFLK-PDGIMI  294 (448)
T ss_dssp             HHHHHHHTTTTTTEEEEES-------TTTSCHS-S-EEEEEE---BTTBTTTSHHHHHHHGGGGEE-EEEEEE
T ss_pred             HHHHHHhcCCCCeEEEEeCc------ccCCCCC-CceeEEEEeccCCccccccCHHHHHHHHhhcC-CCCEEe
Confidence            532    1   678888875      5555433 4899999743211112   2346788889999 998876

These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....

>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]

Probab=98.81  E-value=9.4e-08  Score=73.61  Aligned_cols=114  Identities=15%  Similarity=0.168  Sum_probs=87.6

Q ss_pred             HHHHHHhhCC--CCCeEEEEcCcccHhHHHHHhhC---CeEEEEcCCHHHHHHHhc-CCCceEEeCCCCchhhhhhcc-C
Q 037961           23 LFKLIASKTP--KRNLAWDVGTRSGQAAASLAQIY---QHVIATDTSPKQLKFAIK-LPNIRYQLTPTMSITELEQNV-A   95 (262)
Q Consensus        23 ~~~~l~~~~~--~~~~vlDvGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~-~   95 (262)
                      +.+.+++.+.  ++.-|||+|.|||.+|..+.+++   .+++++|.|++......+ .+.++++++|.+.+..  .+. .
T Consensus        36 lA~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~~~ii~gda~~l~~--~l~e~  113 (194)
T COG3963          36 LARKMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGVNIINGDAFDLRT--TLGEH  113 (194)
T ss_pred             HHHHHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCCccccccchhhHHH--HHhhc
Confidence            3445555442  55679999999999999999986   479999999999998876 5888899888322110  111 3


Q ss_pred             CCCceeeEEEccccccCChhH---HHHHHHHhhcCCCeEEEEEecCC
Q 037961           96 TQSSVDLVTIASALHWFDLPQ---FYKQVKWVLKKPSGVIAAWTYTM  139 (262)
Q Consensus        96 ~~~~~D~V~~~~~~~~~d~~~---~l~~~~r~Lk~pgG~l~i~~~~~  139 (262)
                      ....||.|+|+..+--+.+..   .++++...|. +||.++.+.|++
T Consensus       114 ~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~-~gg~lvqftYgp  159 (194)
T COG3963         114 KGQFFDSVISGLPLLNFPMHRRIAILESLLYRLP-AGGPLVQFTYGP  159 (194)
T ss_pred             CCCeeeeEEeccccccCcHHHHHHHHHHHHHhcC-CCCeEEEEEecC
Confidence            567799999999888775444   7888889999 999999988873

>KOG1331 consensus Predicted methyltransferase [General function prediction only]

Probab=98.79  E-value=9.8e-09  Score=85.63  Aligned_cols=124  Identities=15%  Similarity=0.161  Sum_probs=93.0

Q ss_pred             hHHHHHHHHhhCCCChHHHHHHHHhhCCCCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhcCCCceEEeCCC
Q 037961            5 FIKQANLYAVARPNYPKELFKLIASKTPKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKLPNIRYQLTPT   84 (262)
Q Consensus         5 F~~~a~~Y~~~rp~yp~~~~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~   84 (262)
                      |++.|......|+..-+....++. ..+.+..++|+|||.|..+..=  ....++|.|.+...+..+++........   
T Consensus        18 Yd~ia~~fs~tr~~~Wp~v~qfl~-~~~~gsv~~d~gCGngky~~~~--p~~~~ig~D~c~~l~~~ak~~~~~~~~~---   91 (293)
T KOG1331|consen   18 YDKIATHFSATRAAPWPMVRQFLD-SQPTGSVGLDVGCGNGKYLGVN--PLCLIIGCDLCTGLLGGAKRSGGDNVCR---   91 (293)
T ss_pred             HHHhhhhccccccCccHHHHHHHh-ccCCcceeeecccCCcccCcCC--CcceeeecchhhhhccccccCCCceeeh---
Confidence            556666666666655455454444 4456889999999999765321  3557999999999998888653323332   


Q ss_pred             CchhhhhhccCCCCceeeEEEccccccCC----hhHHHHHHHHhhcCCCeEEEEEecC
Q 037961           85 MSITELEQNVATQSSVDLVTIASALHWFD----LPQFYKQVKWVLKKPSGVIAAWTYT  138 (262)
Q Consensus        85 ~~~~~~~~~~~~~~~~D~V~~~~~~~~~d----~~~~l~~~~r~Lk~pgG~l~i~~~~  138 (262)
                         .|+-.+|+++.+||.+++...+||+.    ...+++++.|+|+ |||...+|.+.
T Consensus        92 ---ad~l~~p~~~~s~d~~lsiavihhlsT~~RR~~~l~e~~r~lr-pgg~~lvyvwa  145 (293)
T KOG1331|consen   92 ---ADALKLPFREESFDAALSIAVIHHLSTRERRERALEELLRVLR-PGGNALVYVWA  145 (293)
T ss_pred             ---hhhhcCCCCCCccccchhhhhhhhhhhHHHHHHHHHHHHHHhc-CCCceEEEEeh
Confidence               56888999999999999999999993    3349999999999 99998886654

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=98.79  E-value=5.7e-09  Score=93.42  Aligned_cols=98  Identities=19%  Similarity=0.239  Sum_probs=70.8

Q ss_pred             CCCeEEEEcCcccHhHHHHHhhCCeEEE---EcCCHHHHHHHhcCCCceEEeCCCCchhhhhhccCCCCceeeEEEcccc
Q 037961           33 KRNLAWDVGTRSGQAAASLAQIYQHVIA---TDTSPKQLKFAIKLPNIRYQLTPTMSITELEQNVATQSSVDLVTIASAL  109 (262)
Q Consensus        33 ~~~~vlDvGcG~G~~~~~l~~~~~~v~~---vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~  109 (262)
                      .-+++||+|||+|+++..|.+++--+..   -|..+.+++.|-++ ++.-..+.    ---..+|+++++||+|.|+.++
T Consensus       117 ~iR~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfaleR-Gvpa~~~~----~~s~rLPfp~~~fDmvHcsrc~  191 (506)
T PF03141_consen  117 GIRTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALER-GVPAMIGV----LGSQRLPFPSNAFDMVHCSRCL  191 (506)
T ss_pred             ceEEEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhhc-Ccchhhhh----hccccccCCccchhhhhccccc
Confidence            4478899999999999999998764443   35566677766543 12222111    0135688999999999987776


Q ss_pred             -ccC-ChhHHHHHHHHhhcCCCeEEEEEe
Q 037961          110 -HWF-DLPQFYKQVKWVLKKPSGVIAAWT  136 (262)
Q Consensus       110 -~~~-d~~~~l~~~~r~Lk~pgG~l~i~~  136 (262)
                       .|. +-...+-++.|+|| |||.++...
T Consensus       192 i~W~~~~g~~l~evdRvLR-pGGyfv~S~  219 (506)
T PF03141_consen  192 IPWHPNDGFLLFEVDRVLR-PGGYFVLSG  219 (506)
T ss_pred             ccchhcccceeehhhhhhc-cCceEEecC
Confidence             577 44568999999999 999987743

; GO: 0008168 methyltransferase activity

>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB

Probab=98.79  E-value=4.9e-08  Score=86.96  Aligned_cols=119  Identities=10%  Similarity=0.129  Sum_probs=80.2

Q ss_pred             HHHHHHHHhhC--CCCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhcC------CCceEEeCCCCchhhhhh
Q 037961           21 KELFKLIASKT--PKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKL------PNIRYQLTPTMSITELEQ   92 (262)
Q Consensus        21 ~~~~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~~~~   92 (262)
                      +.+++.+...+  .++.+|||+|||+|.++..++..+.+|+|+|+++.+++.|+++      .++++..++      +.+
T Consensus       219 ~~l~~~~~~~l~~~~~~~vLDL~cG~G~~~l~la~~~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d------~~~  292 (374)
T TIGR02085       219 AQLYATARQWVREIPVTQMWDLFCGVGGFGLHCAGPDTQLTGIEIESEAIACAQQSAQMLGLDNLSFAALD------SAK  292 (374)
T ss_pred             HHHHHHHHHHHHhcCCCEEEEccCCccHHHHHHhhcCCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECC------HHH
Confidence            34455554443  2457899999999999999999899999999999999988853      367787766      322


Q ss_pred             cc-CCCCceeeEEEccccccCChhHHHHHHHHhhcCCCeEEEEEecCCCcccHHHHHh
Q 037961           93 NV-ATQSSVDLVTIASALHWFDLPQFYKQVKWVLKKPSGVIAAWTYTMPEINESVGAV  149 (262)
Q Consensus        93 ~~-~~~~~~D~V~~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~~~~~~~~~~~~~  149 (262)
                      .. ...++||+|+++..---++ .++++.+. -++ |++.+++.+ +...+.+.+..+
T Consensus       293 ~~~~~~~~~D~vi~DPPr~G~~-~~~l~~l~-~~~-p~~ivyvsc-~p~TlaRDl~~L  346 (374)
T TIGR02085       293 FATAQMSAPELVLVNPPRRGIG-KELCDYLS-QMA-PKFILYSSC-NAQTMAKDIAEL  346 (374)
T ss_pred             HHHhcCCCCCEEEECCCCCCCc-HHHHHHHH-hcC-CCeEEEEEe-CHHHHHHHHHHh
Confidence            11 1124599999886643222 34555554 368 888887743 444444555555

This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.

>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]

Probab=98.77  E-value=1.5e-08  Score=86.90  Aligned_cols=93  Identities=22%  Similarity=0.149  Sum_probs=70.0

Q ss_pred             CCCeEEEEcCcccHhHHHHHhhCC-eEEEEcCCHHHHHHHhcC-------CCceEEeCCCCchhhhhhccCCCCceeeEE
Q 037961           33 KRNLAWDVGTRSGQAAASLAQIYQ-HVIATDTSPKQLKFAIKL-------PNIRYQLTPTMSITELEQNVATQSSVDLVT  104 (262)
Q Consensus        33 ~~~~vlDvGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~  104 (262)
                      ++.+|||||||||.+++..++.|+ +|+|+|-|. +++.|++.       .-+++..+.      ++++.+|-+++|+|+
T Consensus        60 ~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~-ia~~a~~iv~~N~~~~ii~vi~gk------vEdi~LP~eKVDiIv  132 (346)
T KOG1499|consen   60 KDKTVLDVGCGTGILSMFAAKAGARKVYAVEASS-IADFARKIVKDNGLEDVITVIKGK------VEDIELPVEKVDIIV  132 (346)
T ss_pred             CCCEEEEcCCCccHHHHHHHHhCcceEEEEechH-HHHHHHHHHHhcCccceEEEeecc------eEEEecCccceeEEe
Confidence            678999999999999999999986 799999994 44777652       235556544      555556678999999


Q ss_pred             EccccccCChhH----HHHHHHHhhcCCCeEEE
Q 037961          105 IASALHWFDLPQ----FYKQVKWVLKKPSGVIA  133 (262)
Q Consensus       105 ~~~~~~~~d~~~----~l~~~~r~Lk~pgG~l~  133 (262)
                      +-+.=+|+=.+.    ++-.=-+.|+ |||.++
T Consensus       133 SEWMGy~Ll~EsMldsVl~ARdkwL~-~~G~i~  164 (346)
T KOG1499|consen  133 SEWMGYFLLYESMLDSVLYARDKWLK-EGGLIY  164 (346)
T ss_pred             ehhhhHHHHHhhhhhhhhhhhhhccC-CCceEc
Confidence            987766663333    4444457799 999876

>PLN02823 spermine synthase

Probab=98.77  E-value=8.3e-08  Score=83.84  Aligned_cols=111  Identities=17%  Similarity=0.234  Sum_probs=78.7

Q ss_pred             ChHHHHHHHHhhCCCCCeEEEEcCcccHhHHHHHhh--CCeEEEEcCCHHHHHHHhcC----------CCceEEeCCCCc
Q 037961           19 YPKELFKLIASKTPKRNLAWDVGTRSGQAAASLAQI--YQHVIATDTSPKQLKFAIKL----------PNIRYQLTPTMS   86 (262)
Q Consensus        19 yp~~~~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~----------~~~~~~~~~~~~   86 (262)
                      |.+.+....+-..+...+||.+|+|.|..++.++++  ..+|+++|+++.+++.+++.          ++++++.+|   
T Consensus        89 YhE~l~h~~l~~~~~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~D---  165 (336)
T PLN02823         89 YHESLVHPALLHHPNPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIIND---  165 (336)
T ss_pred             HHHHHHhHHHhhCCCCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEECh---
Confidence            544444443334456678999999999999988875  36899999999999999863          456666665   


Q ss_pred             hhhhhh-ccCCCCceeeEEEcccccc-------CChhHHHH-HHHHhhcCCCeEEEEEe
Q 037961           87 ITELEQ-NVATQSSVDLVTIASALHW-------FDLPQFYK-QVKWVLKKPSGVIAAWT  136 (262)
Q Consensus        87 ~~~~~~-~~~~~~~~D~V~~~~~~~~-------~d~~~~l~-~~~r~Lk~pgG~l~i~~  136 (262)
                         +.. +.-..++||+|++...=.+       +=...+++ .+.+.|+ |||++++..
T Consensus       166 ---a~~~L~~~~~~yDvIi~D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~-p~Gvlv~q~  220 (336)
T PLN02823        166 ---ARAELEKRDEKFDVIIGDLADPVEGGPCYQLYTKSFYERIVKPKLN-PGGIFVTQA  220 (336)
T ss_pred             ---hHHHHhhCCCCccEEEecCCCccccCcchhhccHHHHHHHHHHhcC-CCcEEEEec
Confidence               222 2224578999998742211       11345787 8999999 999998753

>PTZ00338 dimethyladenosine transferase-like protein; Provisional

Probab=98.77  E-value=4.3e-08  Score=84.25  Aligned_cols=85  Identities=14%  Similarity=0.166  Sum_probs=65.6

Q ss_pred             HHHHHHHHhhC--CCCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhc-------CCCceEEeCCCCchhhhh
Q 037961           21 KELFKLIASKT--PKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIK-------LPNIRYQLTPTMSITELE   91 (262)
Q Consensus        21 ~~~~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~-------~~~~~~~~~~~~~~~~~~   91 (262)
                      +.+++.+....  .++..|||||||+|.+|..+++.+.+|+++|+++.|++.+++       ..+++++.+|      +.
T Consensus        22 ~~i~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~D------al   95 (294)
T PTZ00338         22 PLVLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQLAKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGD------AL   95 (294)
T ss_pred             HHHHHHHHHhcCCCCcCEEEEecCchHHHHHHHHHhCCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECC------Hh
Confidence            34555665544  467899999999999999999999999999999999998875       2467888776      33


Q ss_pred             hccCCCCceeeEEEccccccCC
Q 037961           92 QNVATQSSVDLVTIASALHWFD  113 (262)
Q Consensus        92 ~~~~~~~~~D~V~~~~~~~~~d  113 (262)
                      ...  ...||.|+++...++..
T Consensus        96 ~~~--~~~~d~VvaNlPY~Ist  115 (294)
T PTZ00338         96 KTE--FPYFDVCVANVPYQISS  115 (294)
T ss_pred             hhc--ccccCEEEecCCcccCc
Confidence            332  23689999988877654

>TIGR00095 RNA methyltransferase, RsmD family

Probab=98.77  E-value=1.1e-07  Score=76.70  Aligned_cols=108  Identities=9%  Similarity=0.048  Sum_probs=72.0

Q ss_pred             HHHHHHhhCCCCCeEEEEcCcccHhHHHHHhhCC-eEEEEcCCHHHHHHHhcC-------CCceEEeCCCCchhhhhhcc
Q 037961           23 LFKLIASKTPKRNLAWDVGTRSGQAAASLAQIYQ-HVIATDTSPKQLKFAIKL-------PNIRYQLTPTMSITELEQNV   94 (262)
Q Consensus        23 ~~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~~~~~~   94 (262)
                      +++.+... -.+.++||++||+|.++..++.+|+ +|+++|.++.+++.++++       .+++++.+|...  .+..+.
T Consensus        40 ~f~~l~~~-~~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~--~l~~~~  116 (189)
T TIGR00095        40 FFNILRPE-IQGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALR--ALKFLA  116 (189)
T ss_pred             HHHHHHHh-cCCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHH--HHHHhh
Confidence            34444332 2567899999999999999999987 899999999999988753       245666665110  011111


Q ss_pred             CCCCceeeEEEccccccCChhHHHHHHHH--hhcCCCeEEEE
Q 037961           95 ATQSSVDLVTIASALHWFDLPQFYKQVKW--VLKKPSGVIAA  134 (262)
Q Consensus        95 ~~~~~~D~V~~~~~~~~~d~~~~l~~~~r--~Lk~pgG~l~i  134 (262)
                      -....||+|+....+..-..+.+++.+.+  +|+ ++|.+++
T Consensus       117 ~~~~~~dvv~~DPPy~~~~~~~~l~~l~~~~~l~-~~~iiv~  157 (189)
T TIGR00095       117 KKPTFDNVIYLDPPFFNGALQALLELCENNWILE-DTVLIVV  157 (189)
T ss_pred             ccCCCceEEEECcCCCCCcHHHHHHHHHHCCCCC-CCeEEEE
Confidence            11224899988777754444555555543  678 8888777

This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.

>COG4122 Predicted O-methyltransferase [General function prediction only]

Probab=98.75  E-value=8.6e-08  Score=78.29  Aligned_cols=95  Identities=22%  Similarity=0.308  Sum_probs=72.8

Q ss_pred             CCCCeEEEEcCcccHhHHHHHhh---CCeEEEEcCCHHHHHHHhcC-------CCceEEe-CCCCchhhhhhccCCCCce
Q 037961           32 PKRNLAWDVGTRSGQAAASLAQI---YQHVIATDTSPKQLKFAIKL-------PNIRYQL-TPTMSITELEQNVATQSSV  100 (262)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~-------~~~~~~~-~~~~~~~~~~~~~~~~~~~  100 (262)
                      .+..+|||+|.+.|..+..++..   ..+++++|.++++.+.|+++       ..+..+. ++.+  ..++.  ...++|
T Consensus        58 ~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal--~~l~~--~~~~~f  133 (219)
T COG4122          58 SGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDAL--DVLSR--LLDGSF  133 (219)
T ss_pred             cCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHH--HHHHh--ccCCCc
Confidence            46678899999999999999874   35899999999999999873       3466666 3521  11222  357899


Q ss_pred             eeEEEccccccC-ChhHHHHHHHHhhcCCCeEEEE
Q 037961          101 DLVTIASALHWF-DLPQFYKQVKWVLKKPSGVIAA  134 (262)
Q Consensus       101 D~V~~~~~~~~~-d~~~~l~~~~r~Lk~pgG~l~i  134 (262)
                      |+|+....   - +...+++.+.++|+ |||.+++
T Consensus       134 DliFIDad---K~~yp~~le~~~~lLr-~GGliv~  164 (219)
T COG4122         134 DLVFIDAD---KADYPEYLERALPLLR-PGGLIVA  164 (219)
T ss_pred             cEEEEeCC---hhhCHHHHHHHHHHhC-CCcEEEE
Confidence            99996421   2 45569999999999 9999998

>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]

Probab=98.75  E-value=1.8e-07  Score=77.26  Aligned_cols=100  Identities=22%  Similarity=0.304  Sum_probs=79.5

Q ss_pred             CeEEEEcCcccHhHHHHHhhC--CeEEEEcCCHHHHHHHhc------CCCceEEeCCCCchhhhhhccCCCCceeeEEEc
Q 037961           35 NLAWDVGTRSGQAAASLAQIY--QHVIATDTSPKQLKFAIK------LPNIRYQLTPTMSITELEQNVATQSSVDLVTIA  106 (262)
Q Consensus        35 ~~vlDvGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~  106 (262)
                      ..+||||||.|.+...+|+..  ..++|||+....+..|.+      ..|+.+.++|.   ..+.+.-+++++.|-|..+
T Consensus        50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA---~~~l~~~~~~~sl~~I~i~  126 (227)
T COG0220          50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDA---VEVLDYLIPDGSLDKIYIN  126 (227)
T ss_pred             cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCH---HHHHHhcCCCCCeeEEEEE
Confidence            588999999999999999974  479999999999887753      24888888771   2233333567799999999


Q ss_pred             cccccC-C--------hhHHHHHHHHhhcCCCeEEEEEecC
Q 037961          107 SALHWF-D--------LPQFYKQVKWVLKKPSGVIAAWTYT  138 (262)
Q Consensus       107 ~~~~~~-d--------~~~~l~~~~r~Lk~pgG~l~i~~~~  138 (262)
                      +.=.|. .        ...+++.+.++|+ |||.|.+-+-.
T Consensus       127 FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk-~gG~l~~aTD~  166 (227)
T COG0220         127 FPDPWPKKRHHKRRLTQPEFLKLYARKLK-PGGVLHFATDN  166 (227)
T ss_pred             CCCCCCCccccccccCCHHHHHHHHHHcc-CCCEEEEEecC
Confidence            999888 3        2349999999999 99999985533

>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]

Probab=98.75  E-value=8.4e-08  Score=82.78  Aligned_cols=114  Identities=15%  Similarity=0.092  Sum_probs=89.4

Q ss_pred             CChHHHHHHHHhhC--CCCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhcC------CCceEEeCCCCchhh
Q 037961           18 NYPKELFKLIASKT--PKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKL------PNIRYQLTPTMSITE   89 (262)
Q Consensus        18 ~yp~~~~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~   89 (262)
                      +.++.+...+.+..  .++..|||==||||.+.....-.|.+++|+|++..|++-++.+      ....+..     ..|
T Consensus       180 s~~P~lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~-----~~D  254 (347)
T COG1041         180 SMDPRLARAMVNLARVKRGELVLDPFCGTGGILIEAGLMGARVIGSDIDERMVRGAKINLEYYGIEDYPVLK-----VLD  254 (347)
T ss_pred             CcCHHHHHHHHHHhccccCCEeecCcCCccHHHHhhhhcCceEeecchHHHHHhhhhhhhhhhCcCceeEEE-----ecc
Confidence            34677777776654  5778999999999999999988999999999999999999864      2222222     237


Q ss_pred             hhhccCCCCceeeEEEccccc------cCC----hhHHHHHHHHhhcCCCeEEEEEec
Q 037961           90 LEQNVATQSSVDLVTIASALH------WFD----LPQFYKQVKWVLKKPSGVIAAWTY  137 (262)
Q Consensus        90 ~~~~~~~~~~~D~V~~~~~~~------~~d----~~~~l~~~~r~Lk~pgG~l~i~~~  137 (262)
                      +..+|+++.++|.|++....-      -..    ..++++.+.++|+ +||.+++|..
T Consensus       255 a~~lpl~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk-~gG~~vf~~p  311 (347)
T COG1041         255 ATNLPLRDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLK-PGGRIVFAAP  311 (347)
T ss_pred             cccCCCCCCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhh-cCcEEEEecC
Confidence            888998888999999854432      122    4558999999999 9999999876

>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.74  E-value=4.5e-08  Score=77.09  Aligned_cols=85  Identities=16%  Similarity=0.214  Sum_probs=63.8

Q ss_pred             CCCeEEEEcCcccHhHHHHHhhC-CeEEEEcCCHHHHHHHhcC-----CCceEEeCCCCchhhhhhccCCCCceeeEEEc
Q 037961           33 KRNLAWDVGTRSGQAAASLAQIY-QHVIATDTSPKQLKFAIKL-----PNIRYQLTPTMSITELEQNVATQSSVDLVTIA  106 (262)
Q Consensus        33 ~~~~vlDvGcG~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~  106 (262)
                      .+.+|+|+|||||.++...+-.| ..|+|+|+++++++.++++     .++.+.++|      +.+.   ++.+|.|+.|
T Consensus        45 ~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~d------v~~~---~~~~dtvimN  115 (198)
T COG2263          45 EGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEELLGDVEFVVAD------VSDF---RGKFDTVIMN  115 (198)
T ss_pred             CCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhhCCceEEEEcc------hhhc---CCccceEEEC
Confidence            56789999999999999999888 4799999999999999975     357777765      3332   5679999998


Q ss_pred             ccccc-C-C-hhHHHHHHHHhhc
Q 037961          107 SALHW-F-D-LPQFYKQVKWVLK  126 (262)
Q Consensus       107 ~~~~~-~-d-~~~~l~~~~r~Lk  126 (262)
                      ..|-- . . -..++..+.++-+
T Consensus       116 PPFG~~~rhaDr~Fl~~Ale~s~  138 (198)
T COG2263         116 PPFGSQRRHADRPFLLKALEISD  138 (198)
T ss_pred             CCCccccccCCHHHHHHHHHhhh
Confidence            87752 2 2 2225555555533

>PLN02476 O-methyltransferase

Probab=98.73  E-value=9.9e-08  Score=80.90  Aligned_cols=98  Identities=14%  Similarity=0.230  Sum_probs=71.4

Q ss_pred             CCCCeEEEEcCcccHhHHHHHhh---CCeEEEEcCCHHHHHHHhcC-------CCceEEeCCCCchhhhhhcc--CCCCc
Q 037961           32 PKRNLAWDVGTRSGQAAASLAQI---YQHVIATDTSPKQLKFAIKL-------PNIRYQLTPTMSITELEQNV--ATQSS   99 (262)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~~~~~~--~~~~~   99 (262)
                      .+..+|||+|+|+|..+..++..   ..+|+++|.+++..+.|+++       .++++..++...  .+..+.  -..++
T Consensus       117 ~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e--~L~~l~~~~~~~~  194 (278)
T PLN02476        117 LGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAE--SLKSMIQNGEGSS  194 (278)
T ss_pred             cCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHH--HHHHHHhcccCCC
Confidence            35678999999999999999873   45799999999999999863       478888876111  111111  12468


Q ss_pred             eeeEEEccccccCChhHHHHHHHHhhcCCCeEEEE
Q 037961          100 VDLVTIASALHWFDLPQFYKQVKWVLKKPSGVIAA  134 (262)
Q Consensus       100 ~D~V~~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i  134 (262)
                      ||+|+....=  -+....++.+.++|+ |||.+++
T Consensus       195 FD~VFIDa~K--~~Y~~y~e~~l~lL~-~GGvIV~  226 (278)
T PLN02476        195 YDFAFVDADK--RMYQDYFELLLQLVR-VGGVIVM  226 (278)
T ss_pred             CCEEEECCCH--HHHHHHHHHHHHhcC-CCcEEEE
Confidence            9999965320  033457889999999 9999987

>PRK04148 hypothetical protein; Provisional

Probab=98.72  E-value=2.9e-07  Score=69.32  Aligned_cols=106  Identities=16%  Similarity=0.087  Sum_probs=72.6

Q ss_pred             HHHHHHHhhCC--CCCeEEEEcCcccH-hHHHHHhhCCeEEEEcCCHHHHHHHhcCCCceEEeCCCCchhhhhhccCCCC
Q 037961           22 ELFKLIASKTP--KRNLAWDVGTRSGQ-AAASLAQIYQHVIATDTSPKQLKFAIKLPNIRYQLTPTMSITELEQNVATQS   98 (262)
Q Consensus        22 ~~~~~l~~~~~--~~~~vlDvGcG~G~-~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (262)
                      .+.++|..+.+  ++.++||||||+|. ++..|++.|.+|+++|+++..++.+++. .+.++.+|.+.     .-+--..
T Consensus         3 ~i~~~l~~~~~~~~~~kileIG~GfG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~-~~~~v~dDlf~-----p~~~~y~   76 (134)
T PRK04148          3 TIAEFIAENYEKGKNKKIVELGIGFYFKVAKKLKESGFDVIVIDINEKAVEKAKKL-GLNAFVDDLFN-----PNLEIYK   76 (134)
T ss_pred             HHHHHHHHhcccccCCEEEEEEecCCHHHHHHHHHCCCEEEEEECCHHHHHHHHHh-CCeEEECcCCC-----CCHHHHh
Confidence            45666666553  45779999999996 8889999999999999999999988875 56777776211     0001245


Q ss_pred             ceeeEEEccccccCChhHHHHHHHHhhcCCCeEEEEEecC
Q 037961           99 SVDLVTIASALHWFDLPQFYKQVKWVLKKPSGVIAAWTYT  138 (262)
Q Consensus        99 ~~D~V~~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~~  138 (262)
                      .+|+|.+..     .+.....-+.++-++-|.-+++...+
T Consensus        77 ~a~liysir-----pp~el~~~~~~la~~~~~~~~i~~l~  111 (134)
T PRK04148         77 NAKLIYSIR-----PPRDLQPFILELAKKINVPLIIKPLS  111 (134)
T ss_pred             cCCEEEEeC-----CCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence            689999743     34555555555555345566664443

>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []

Probab=98.72  E-value=1.8e-07  Score=78.15  Aligned_cols=112  Identities=21%  Similarity=0.243  Sum_probs=77.8

Q ss_pred             CChHHHHHHHHh-hCCCCCeEEEEcCcccHhHHHHHhh---CCeEEEEcCCHHHHHHHhcC-------CCceEEeCCCCc
Q 037961           18 NYPKELFKLIAS-KTPKRNLAWDVGTRSGQAAASLAQI---YQHVIATDTSPKQLKFAIKL-------PNIRYQLTPTMS   86 (262)
Q Consensus        18 ~yp~~~~~~l~~-~~~~~~~vlDvGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~   86 (262)
                      -||+.+--.+.. -+.++.+|||.|.|+|.+|..|++.   ..+|+..|..++.++.|+++       .++.+...|   
T Consensus        24 iYpkD~~~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~D---  100 (247)
T PF08704_consen   24 IYPKDISYILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRD---  100 (247)
T ss_dssp             --HHHHHHHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES----
T ss_pred             eeCchHHHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecc---
Confidence            577665443333 2479999999999999999999975   35899999999999999862       467777776   


Q ss_pred             hhhhhhccC---CCCceeeEEEccccccCChhHHHHHHHHhh-cCCCeEEEEEecCCC
Q 037961           87 ITELEQNVA---TQSSVDLVTIASALHWFDLPQFYKQVKWVL-KKPSGVIAAWTYTMP  140 (262)
Q Consensus        87 ~~~~~~~~~---~~~~~D~V~~~~~~~~~d~~~~l~~~~r~L-k~pgG~l~i~~~~~~  140 (262)
                         +..-++   .+..+|.|+....    +|-.++..+.++| | |||.|++|...-.
T Consensus       101 ---v~~~g~~~~~~~~~DavfLDlp----~Pw~~i~~~~~~L~~-~gG~i~~fsP~ie  150 (247)
T PF08704_consen  101 ---VCEEGFDEELESDFDAVFLDLP----DPWEAIPHAKRALKK-PGGRICCFSPCIE  150 (247)
T ss_dssp             ---GGCG--STT-TTSEEEEEEESS----SGGGGHHHHHHHE-E-EEEEEEEEESSHH
T ss_pred             ---eecccccccccCcccEEEEeCC----CHHHHHHHHHHHHhc-CCceEEEECCCHH
Confidence               211112   1367999996533    6668999999999 8 9999999876543

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.

>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases

Probab=98.69  E-value=7.5e-08  Score=78.44  Aligned_cols=105  Identities=18%  Similarity=0.295  Sum_probs=74.0

Q ss_pred             HHHHHhhCCCCCeEEEEcCcccHhHHHHHhh---CCeEEEEcCCHHHHHHHhcC-------CCceEEeCCCCchhhhhhc
Q 037961           24 FKLIASKTPKRNLAWDVGTRSGQAAASLAQI---YQHVIATDTSPKQLKFAIKL-------PNIRYQLTPTMSITELEQN   93 (262)
Q Consensus        24 ~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~~~~~   93 (262)
                      +..+... .+..+||||||++|..+..++..   ..+|+.+|+++.+.+.|++.       .+++++.++...  -+..+
T Consensus        37 L~~l~~~-~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~--~l~~l  113 (205)
T PF01596_consen   37 LQMLVRL-TRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALE--VLPEL  113 (205)
T ss_dssp             HHHHHHH-HT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHH--HHHHH
T ss_pred             HHHHHHh-cCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHh--hHHHH
Confidence            3334333 35568899999999999999974   57999999999999999752       478888887110  11111


Q ss_pred             c--CCCCceeeEEEccccccCChhHHHHHHHHhhcCCCeEEEE
Q 037961           94 V--ATQSSVDLVTIASALHWFDLPQFYKQVKWVLKKPSGVIAA  134 (262)
Q Consensus        94 ~--~~~~~~D~V~~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i  134 (262)
                      .  -+.++||+|+....=  -+....+..+.++|+ |||.+++
T Consensus       114 ~~~~~~~~fD~VFiDa~K--~~y~~y~~~~~~ll~-~ggvii~  153 (205)
T PF01596_consen  114 ANDGEEGQFDFVFIDADK--RNYLEYFEKALPLLR-PGGVIIA  153 (205)
T ss_dssp             HHTTTTTSEEEEEEESTG--GGHHHHHHHHHHHEE-EEEEEEE
T ss_pred             HhccCCCceeEEEEcccc--cchhhHHHHHhhhcc-CCeEEEE
Confidence            1  124689999975421  134457888999999 9999998

The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....

>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]

Probab=98.68  E-value=1.3e-07  Score=83.86  Aligned_cols=121  Identities=12%  Similarity=0.118  Sum_probs=85.6

Q ss_pred             HHHhhCCCCCeEEEEcCcccHhHHHHHhhCC-eEEEEcCCHHHHHHHhcC--------CCceEEeCCCCchhhhhhccCC
Q 037961           26 LIASKTPKRNLAWDVGTRSGQAAASLAQIYQ-HVIATDTSPKQLKFAIKL--------PNIRYQLTPTMSITELEQNVAT   96 (262)
Q Consensus        26 ~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~--------~~~~~~~~~~~~~~~~~~~~~~   96 (262)
                      .+..... +.+||++-|=||.++...+..|+ +|+.||.|...++.|+++        ..+.++++|.+..  ++..--.
T Consensus       211 ~l~~~~~-GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~--l~~~~~~  287 (393)
T COG1092         211 ALGELAA-GKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKW--LRKAERR  287 (393)
T ss_pred             HHhhhcc-CCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHH--HHHHHhc
Confidence            3444445 88999999999999999999998 999999999999999863        3467777762211  2222223


Q ss_pred             CCceeeEEEccccc---------cC-ChhHHHHHHHHhhcCCCeEEEEEecCCCcccHHHHHhh
Q 037961           97 QSSVDLVTIASALH---------WF-DLPQFYKQVKWVLKKPSGVIAAWTYTMPEINESVGAVF  150 (262)
Q Consensus        97 ~~~~D~V~~~~~~~---------~~-d~~~~l~~~~r~Lk~pgG~l~i~~~~~~~~~~~~~~~~  150 (262)
                      ..+||+|+....-.         -. |...++..+.++|+ |||+++++++....-...+.++.
T Consensus       288 g~~fDlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~-pgG~l~~~s~~~~~~~~~f~~~i  350 (393)
T COG1092         288 GEKFDLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLA-PGGTLVTSSCSRHFSSDLFLEII  350 (393)
T ss_pred             CCcccEEEECCcccccCcccchhHHHHHHHHHHHHHHHcC-CCCEEEEEecCCccCHHHHHHHH
Confidence            45899999843221         12 45557889999999 99999997766443334444433

>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]

Probab=98.68  E-value=1.1e-07  Score=80.84  Aligned_cols=92  Identities=24%  Similarity=0.235  Sum_probs=68.9

Q ss_pred             CCCeEEEEcCcccHhHHHHHhhCC-eEEEEcCCHHHHHHHhcC-------CCceEEeCCCCchhhhhhccCCCCceeeEE
Q 037961           33 KRNLAWDVGTRSGQAAASLAQIYQ-HVIATDTSPKQLKFAIKL-------PNIRYQLTPTMSITELEQNVATQSSVDLVT  104 (262)
Q Consensus        33 ~~~~vlDvGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~  104 (262)
                      .++.|||+|||+|.++...++.|+ +|.+++.| +|.++|+++       .+|.++.+      .+|++.+| ++.|+|+
T Consensus       177 ~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS-~MAqyA~~Lv~~N~~~~rItVI~G------KiEdieLP-Ek~DviI  248 (517)
T KOG1500|consen  177 QDKIVLDVGAGSGILSFFAAQAGAKKVYAVEAS-EMAQYARKLVASNNLADRITVIPG------KIEDIELP-EKVDVII  248 (517)
T ss_pred             CCcEEEEecCCccHHHHHHHHhCcceEEEEehh-HHHHHHHHHHhcCCccceEEEccC------ccccccCc-hhccEEE
Confidence            678999999999999999999875 79999998 899999874       45566654      46666544 5799999


Q ss_pred             EccccccCChhH---HHHHHHHhhcCCCeEEE
Q 037961          105 IASALHWFDLPQ---FYKQVKWVLKKPSGVIA  133 (262)
Q Consensus       105 ~~~~~~~~d~~~---~l~~~~r~Lk~pgG~l~  133 (262)
                      +-..=..+=-+.   ..-.+++.|+ |.|...
T Consensus       249 SEPMG~mL~NERMLEsYl~Ark~l~-P~GkMf  279 (517)
T KOG1500|consen  249 SEPMGYMLVNERMLESYLHARKWLK-PNGKMF  279 (517)
T ss_pred             eccchhhhhhHHHHHHHHHHHhhcC-CCCccc
Confidence            754433332233   3446779999 999876

>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH

Probab=98.67  E-value=5.9e-08  Score=77.73  Aligned_cols=119  Identities=15%  Similarity=0.140  Sum_probs=82.0

Q ss_pred             hhCCCC---hHHHHHHHHhhCCCCCeEEEEcCcccHhHHHHHhhCC-eEEEEcCCHHHHHHHhcC-------CCceEEeC
Q 037961           14 VARPNY---PKELFKLIASKTPKRNLAWDVGTRSGQAAASLAQIYQ-HVIATDTSPKQLKFAIKL-------PNIRYQLT   82 (262)
Q Consensus        14 ~~rp~y---p~~~~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~-------~~~~~~~~   82 (262)
                      ..||+-   -+.++++|....-++.++||+-||||..+...+++|+ +|+.||.++..++..+++       .++..+..
T Consensus        20 ~~RPT~drvrealFniL~~~~~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~   99 (183)
T PF03602_consen   20 NTRPTTDRVREALFNILQPRNLEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKG   99 (183)
T ss_dssp             TS-SSSHHHHHHHHHHHHCH-HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEES
T ss_pred             CcCCCcHHHHHHHHHHhcccccCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeecc
Confidence            467765   3567888876623678899999999999999999985 899999999999988763       24666666


Q ss_pred             CCCchhhhhhccCCCCceeeEEEccccccCC-hhHHHHHHH--HhhcCCCeEEEEE
Q 037961           83 PTMSITELEQNVATQSSVDLVTIASALHWFD-LPQFYKQVK--WVLKKPSGVIAAW  135 (262)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~D~V~~~~~~~~~d-~~~~l~~~~--r~Lk~pgG~l~i~  135 (262)
                      |..  ..+........+||+|++......-. ..++++.+.  .+|+ ++|.+++=
T Consensus       100 d~~--~~l~~~~~~~~~fDiIflDPPY~~~~~~~~~l~~l~~~~~l~-~~~~ii~E  152 (183)
T PF03602_consen  100 DAF--KFLLKLAKKGEKFDIIFLDPPYAKGLYYEELLELLAENNLLN-EDGLIIIE  152 (183)
T ss_dssp             SHH--HHHHHHHHCTS-EEEEEE--STTSCHHHHHHHHHHHHTTSEE-EEEEEEEE
T ss_pred             CHH--HHHHhhcccCCCceEEEECCCcccchHHHHHHHHHHHCCCCC-CCEEEEEE
Confidence            511  11222222468899999998887765 377888887  7899 89999883

They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.

>PRK00536 speE spermidine synthase; Provisional

Probab=98.65  E-value=3.2e-07  Score=77.25  Aligned_cols=102  Identities=18%  Similarity=0.061  Sum_probs=78.3

Q ss_pred             ChHHHHHHHHhhCCCCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhc-C---------CCceEEeCCCCchh
Q 037961           19 YPKELFKLIASKTPKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIK-L---------PNIRYQLTPTMSIT   88 (262)
Q Consensus        19 yp~~~~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~-~---------~~~~~~~~~~~~~~   88 (262)
                      |.+.+..--+-.++...+||=+|-|.|..++.++++-.+|+.||+++.+++.+++ +         |+++....      
T Consensus        58 YHEmLvHppl~~h~~pk~VLIiGGGDGg~~REvLkh~~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~------  131 (262)
T PRK00536         58 ESELLAHMGGCTKKELKEVLIVDGFDLELAHQLFKYDTHVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ------  131 (262)
T ss_pred             HHHHHHHHHHhhCCCCCeEEEEcCCchHHHHHHHCcCCeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh------
Confidence            4444444444455778999999999999999999987799999999999999997 2         34444321      


Q ss_pred             hhhhccCCCCceeeEEEccccccCChhHHHHHHHHhhcCCCeEEEE
Q 037961           89 ELEQNVATQSSVDLVTIASALHWFDLPQFYKQVKWVLKKPSGVIAA  134 (262)
Q Consensus        89 ~~~~~~~~~~~~D~V~~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i  134 (262)
                       +.+  ...++||+|++...    +.+.+++.+.|.|+ |||.++.
T Consensus       132 -~~~--~~~~~fDVIIvDs~----~~~~fy~~~~~~L~-~~Gi~v~  169 (262)
T PRK00536        132 -LLD--LDIKKYDLIICLQE----PDIHKIDGLKRMLK-EDGVFIS  169 (262)
T ss_pred             -hhh--ccCCcCCEEEEcCC----CChHHHHHHHHhcC-CCcEEEE
Confidence             111  12368999998753    55789999999999 9999998

>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]

Probab=98.64  E-value=4.8e-07  Score=76.35  Aligned_cols=101  Identities=21%  Similarity=0.300  Sum_probs=68.7

Q ss_pred             CCCeEEEEcCcccH----hHHHHHhh-------CCeEEEEcCCHHHHHHHhcC--C---------------------Cce
Q 037961           33 KRNLAWDVGTRSGQ----AAASLAQI-------YQHVIATDTSPKQLKFAIKL--P---------------------NIR   78 (262)
Q Consensus        33 ~~~~vlDvGcG~G~----~~~~l~~~-------~~~v~~vD~s~~~~~~a~~~--~---------------------~~~   78 (262)
                      ..-+|+-+||+||.    .++.|.+.       ..+|+|+|+|...++.|+.-  +                     .-.
T Consensus        96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~  175 (268)
T COG1352          96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS  175 (268)
T ss_pred             CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence            36789999999994    34444442       35799999999999999851  1                     001


Q ss_pred             EEeCC------CCchhhhhhccCCCCceeeEEEccccccCChh---HHHHHHHHhhcCCCeEEEE
Q 037961           79 YQLTP------TMSITELEQNVATQSSVDLVTIASALHWFDLP---QFYKQVKWVLKKPSGVIAA  134 (262)
Q Consensus        79 ~~~~~------~~~~~~~~~~~~~~~~~D~V~~~~~~~~~d~~---~~l~~~~r~Lk~pgG~l~i  134 (262)
                      +...+      .+...++-+-.+..+.||+|+|-+++-++|.+   +++..++..|+ |||.|.+
T Consensus       176 y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~-~gG~Lfl  239 (268)
T COG1352         176 YRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLK-PGGLLFL  239 (268)
T ss_pred             EEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhC-CCCEEEE
Confidence            11111      01111222222145679999999999999643   39999999999 9999998

>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=98.62  E-value=2.2e-07  Score=74.25  Aligned_cols=102  Identities=17%  Similarity=0.223  Sum_probs=79.9

Q ss_pred             HHHHHHHHhhCCCCCeEEEEcCcccHhHHHHHh----hCCeEEEEcCCHHHHHHHhcC----------------CCceEE
Q 037961           21 KELFKLIASKTPKRNLAWDVGTRSGQAAASLAQ----IYQHVIATDTSPKQLKFAIKL----------------PNIRYQ   80 (262)
Q Consensus        21 ~~~~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~----~~~~v~~vD~s~~~~~~a~~~----------------~~~~~~   80 (262)
                      ..+++.|..++.++...||+|.|+|.++..++.    .|...+|||.-++.++.++++                .+..++
T Consensus        70 a~~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~iv  149 (237)
T KOG1661|consen   70 ATALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIV  149 (237)
T ss_pred             HHHHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEE
Confidence            566888888888999999999999999998875    355669999999999998863                244555


Q ss_pred             eCCCCchhhhhhccCCCCceeeEEEccccccCChhHHHHHHHHhhcCCCeEEEE
Q 037961           81 LTPTMSITELEQNVATQSSVDLVTIASALHWFDLPQFYKQVKWVLKKPSGVIAA  134 (262)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~D~V~~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i  134 (262)
                      ++|      ....-.+..+||.|.+.-     +..+.-+++...|+ |||.+++
T Consensus       150 vGD------gr~g~~e~a~YDaIhvGA-----aa~~~pq~l~dqL~-~gGrlli  191 (237)
T KOG1661|consen  150 VGD------GRKGYAEQAPYDAIHVGA-----AASELPQELLDQLK-PGGRLLI  191 (237)
T ss_pred             eCC------ccccCCccCCcceEEEcc-----CccccHHHHHHhhc-cCCeEEE
Confidence            555      223223677899999873     44667888999999 9999998

>PLN02672 methionine S-methyltransferase

Probab=98.61  E-value=2e-07  Score=91.79  Aligned_cols=94  Identities=15%  Similarity=0.197  Sum_probs=67.8

Q ss_pred             CCeEEEEcCcccHhHHHHHhhC--CeEEEEcCCHHHHHHHhcC----------------------CCceEEeCCCCchhh
Q 037961           34 RNLAWDVGTRSGQAAASLAQIY--QHVIATDTSPKQLKFAIKL----------------------PNIRYQLTPTMSITE   89 (262)
Q Consensus        34 ~~~vlDvGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~----------------------~~~~~~~~~~~~~~~   89 (262)
                      +.+|||+|||+|..+..++..+  .+|+|+|+|+.+++.|+++                      .+++++.+|      
T Consensus       119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sD------  192 (1082)
T PLN02672        119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESD------  192 (1082)
T ss_pred             CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECc------
Confidence            3589999999999999999864  5899999999999998642                      136666665      


Q ss_pred             hhhccCC-CCceeeEEEcccc----------------------c----cC--Ch-----------hHHHHHHHHhhcCCC
Q 037961           90 LEQNVAT-QSSVDLVTIASAL----------------------H----WF--DL-----------PQFYKQVKWVLKKPS  129 (262)
Q Consensus        90 ~~~~~~~-~~~~D~V~~~~~~----------------------~----~~--d~-----------~~~l~~~~r~Lk~pg  129 (262)
                      +.+.... ..+||+|++|..-                      |    +.  +-           .+++.++.++|+ ||
T Consensus       193 l~~~~~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~-pg  271 (1082)
T PLN02672        193 LLGYCRDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIK-PM  271 (1082)
T ss_pred             hhhhccccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhcc-CC
Confidence            2111111 2369999996441                      1    11  11           446788889999 99


Q ss_pred             eEEEE
Q 037961          130 GVIAA  134 (262)
Q Consensus       130 G~l~i  134 (262)
                      |.+++
T Consensus       272 G~l~l  276 (1082)
T PLN02672        272 GIMIF  276 (1082)
T ss_pred             CEEEE
Confidence            99987

>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2

Probab=98.61  E-value=4.6e-07  Score=76.07  Aligned_cols=111  Identities=21%  Similarity=0.241  Sum_probs=79.6

Q ss_pred             ChHHHHHHHHhhCCCCCeEEEEcCcccHhHHHHHhhC--CeEEEEcCCHHHHHHHhcC----------CCceEEeCCCCc
Q 037961           19 YPKELFKLIASKTPKRNLAWDVGTRSGQAAASLAQIY--QHVIATDTSPKQLKFAIKL----------PNIRYQLTPTMS   86 (262)
Q Consensus        19 yp~~~~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~----------~~~~~~~~~~~~   86 (262)
                      |.+.+...-+-..++..+||=||-|.|..++.+.++.  .+|++||+++.+++.+++.          ++++++.+|   
T Consensus        62 y~e~l~h~~~~~~~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~D---  138 (246)
T PF01564_consen   62 YHEMLVHPPLLLHPNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGD---  138 (246)
T ss_dssp             HHHHHHHHHHHHSSST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEEST---
T ss_pred             HHHHHhhhHhhcCCCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhh---
Confidence            3344444444455678899999999999999998875  6899999999999999862          577888776   


Q ss_pred             hhhhhh-ccCCCC-ceeeEEEccccccC-----ChhHHHHHHHHhhcCCCeEEEEEe
Q 037961           87 ITELEQ-NVATQS-SVDLVTIASALHWF-----DLPQFYKQVKWVLKKPSGVIAAWT  136 (262)
Q Consensus        87 ~~~~~~-~~~~~~-~~D~V~~~~~~~~~-----d~~~~l~~~~r~Lk~pgG~l~i~~  136 (262)
                         +.. +.-... +||+|+....-...     =...+++.+.+.|+ |||+++++.
T Consensus       139 ---g~~~l~~~~~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~-~~Gv~v~~~  191 (246)
T PF01564_consen  139 ---GRKFLKETQEEKYDVIIVDLTDPDGPAPNLFTREFYQLCKRRLK-PDGVLVLQA  191 (246)
T ss_dssp             ---HHHHHHTSSST-EEEEEEESSSTTSCGGGGSSHHHHHHHHHHEE-EEEEEEEEE
T ss_pred             ---hHHHHHhccCCcccEEEEeCCCCCCCcccccCHHHHHHHHhhcC-CCcEEEEEc
Confidence               211 111233 89999975443222     13569999999999 999999976

5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....

>KOG2904 consensus Predicted methyltransferase [General function prediction only]

Probab=98.56  E-value=1.2e-06  Score=72.81  Aligned_cols=113  Identities=20%  Similarity=0.200  Sum_probs=78.1

Q ss_pred             HHHHHHHHhhCC-----CCCeEEEEcCcccHhHHHHHhh--CCeEEEEcCCHHHHHHHhcC-------CCceEEeCC-CC
Q 037961           21 KELFKLIASKTP-----KRNLAWDVGTRSGQAAASLAQI--YQHVIATDTSPKQLKFAIKL-------PNIRYQLTP-TM   85 (262)
Q Consensus        21 ~~~~~~l~~~~~-----~~~~vlDvGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~-~~   85 (262)
                      +++++++.+.+.     ....+||+|||+|..+..++..  -..++|+|.|+..+..|.++       ..+.++..+ +.
T Consensus       131 EE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~  210 (328)
T KOG2904|consen  131 EEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMES  210 (328)
T ss_pred             HHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEeccccc
Confidence            667777766553     4457999999999999998875  45799999999999988753       455555433 11


Q ss_pred             chhhhhhccCCCCceeeEEEccccccC-C--------------------------hhHHHHHHHHhhcCCCeEEEEEe
Q 037961           86 SITELEQNVATQSSVDLVTIASALHWF-D--------------------------LPQFYKQVKWVLKKPSGVIAAWT  136 (262)
Q Consensus        86 ~~~~~~~~~~~~~~~D~V~~~~~~~~~-d--------------------------~~~~l~~~~r~Lk~pgG~l~i~~  136 (262)
                        ......+...+++|++++|...--- |                          .-.++.-+-|.|+ |||.+.+-.
T Consensus       211 --d~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq-~gg~~~le~  285 (328)
T KOG2904|consen  211 --DASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQ-PGGFEQLEL  285 (328)
T ss_pred             --ccccccccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcc-cCCeEEEEe
Confidence              1122334567999999997553211 1                          1124557789999 999998833

>PLN02589 caffeoyl-CoA O-methyltransferase

Probab=98.56  E-value=5.5e-07  Score=75.37  Aligned_cols=97  Identities=15%  Similarity=0.280  Sum_probs=70.4

Q ss_pred             CCCeEEEEcCcccHhHHHHHhh---CCeEEEEcCCHHHHHHHhcC-------CCceEEeCCCCchhhhhhcc---CCCCc
Q 037961           33 KRNLAWDVGTRSGQAAASLAQI---YQHVIATDTSPKQLKFAIKL-------PNIRYQLTPTMSITELEQNV---ATQSS   99 (262)
Q Consensus        33 ~~~~vlDvGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~~~~~~---~~~~~   99 (262)
                      +..+|||+|+++|..|..++..   ..+|+++|.+++..+.|++.       .+|+++.++..  ..+..+.   -..++
T Consensus        79 ~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~--e~L~~l~~~~~~~~~  156 (247)
T PLN02589         79 NAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPAL--PVLDQMIEDGKYHGT  156 (247)
T ss_pred             CCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHH--HHHHHHHhccccCCc
Confidence            4567899999999999999864   56899999999999998752       57888887611  0111111   01368


Q ss_pred             eeeEEEccccccCChhHHHHHHHHhhcCCCeEEEE
Q 037961          100 VDLVTIASALHWFDLPQFYKQVKWVLKKPSGVIAA  134 (262)
Q Consensus       100 ~D~V~~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i  134 (262)
                      ||+|+....  --.....++.+.++|+ |||.+++
T Consensus       157 fD~iFiDad--K~~Y~~y~~~~l~ll~-~GGviv~  188 (247)
T PLN02589        157 FDFIFVDAD--KDNYINYHKRLIDLVK-VGGVIGY  188 (247)
T ss_pred             ccEEEecCC--HHHhHHHHHHHHHhcC-CCeEEEE
Confidence            999996522  1133447888899999 9999987

>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase

Probab=98.55  E-value=1.8e-07  Score=82.68  Aligned_cols=119  Identities=12%  Similarity=0.131  Sum_probs=75.5

Q ss_pred             HHHHHHHHhhCC-CCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhcC------CCceEEeCCCCchhhhhhc
Q 037961           21 KELFKLIASKTP-KRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKL------PNIRYQLTPTMSITELEQN   93 (262)
Q Consensus        21 ~~~~~~l~~~~~-~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~~~~~   93 (262)
                      +.+++.+.+... .+..|||++||+|.++..+++...+|+|+|+++.+++.|+++      .++++..++....  ....
T Consensus       184 ~~l~~~v~~~~~~~~~~vlDl~~G~G~~sl~la~~~~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~--~~~~  261 (353)
T TIGR02143       184 IKMLEWACEVTQGSKGDLLELYCGNGNFSLALAQNFRRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEF--TQAM  261 (353)
T ss_pred             HHHHHHHHHHhhcCCCcEEEEeccccHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHH--HHHH
Confidence            455666666553 234699999999999999999888999999999999999863      3677887761110  0100


Q ss_pred             ----cC---C-----CCceeeEEEccccccCChhH--HHHHH-HHhhcCCCeEEEEEecCCCcccHHHHHhh
Q 037961           94 ----VA---T-----QSSVDLVTIASALHWFDLPQ--FYKQV-KWVLKKPSGVIAAWTYTMPEINESVGAVF  150 (262)
Q Consensus        94 ----~~---~-----~~~~D~V~~~~~~~~~d~~~--~l~~~-~r~Lk~pgG~l~i~~~~~~~~~~~~~~~~  150 (262)
                          .+   .     ...||+|+.       ||+.  +..++ ..+++ |++.+++ .+++..+.+.+..+.
T Consensus       262 ~~~~~~~~~~~~~~~~~~~d~v~l-------DPPR~G~~~~~l~~l~~-~~~ivYv-sC~p~tlaRDl~~L~  324 (353)
T TIGR02143       262 NGVREFRRLKGIDLKSYNCSTIFV-------DPPRAGLDPDTCKLVQA-YERILYI-SCNPETLKANLEQLS  324 (353)
T ss_pred             hhccccccccccccccCCCCEEEE-------CCCCCCCcHHHHHHHHc-CCcEEEE-EcCHHHHHHHHHHHh
Confidence                00   0     123788875       4433  33344 33446 7777776 444445555555544

This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.

>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]

Probab=98.54  E-value=3.9e-07  Score=75.58  Aligned_cols=82  Identities=13%  Similarity=0.172  Sum_probs=63.4

Q ss_pred             HHHHHHHHhhC--CCCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhcC-------CCceEEeCCCCchhhhh
Q 037961           21 KELFKLIASKT--PKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKL-------PNIRYQLTPTMSITELE   91 (262)
Q Consensus        21 ~~~~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~~~   91 (262)
                      +.+++.|....  ++...|||||.|||.+|..|.+.++.|+|+|+++.|+....++       ...+++.+|.+      
T Consensus        44 p~v~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~l------  117 (315)
T KOG0820|consen   44 PLVIDQIVEKADLKPTDVVLEVGPGTGNLTVKLLEAGKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFL------  117 (315)
T ss_pred             HHHHHHHHhccCCCCCCEEEEeCCCCCHHHHHHHHhcCeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccc------
Confidence            44556665543  5889999999999999999999999999999999999987753       45677776622      


Q ss_pred             hccCCCCceeeEEEccccc
Q 037961           92 QNVATQSSVDLVTIASALH  110 (262)
Q Consensus        92 ~~~~~~~~~D~V~~~~~~~  110 (262)
                      ..  +...||.++++...+
T Consensus       118 K~--d~P~fd~cVsNlPyq  134 (315)
T KOG0820|consen  118 KT--DLPRFDGCVSNLPYQ  134 (315)
T ss_pred             cC--CCcccceeeccCCcc
Confidence            22  345699999976554

>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]

Probab=98.54  E-value=4.3e-08  Score=78.03  Aligned_cols=93  Identities=19%  Similarity=0.207  Sum_probs=74.5

Q ss_pred             CCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhcCCCceEEeCCCCchhhhhhccCCCCceeeEEEccccccC
Q 037961           33 KRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKLPNIRYQLTPTMSITELEQNVATQSSVDLVTIASALHWF  112 (262)
Q Consensus        33 ~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~~~~  112 (262)
                      .+.++||+|+|.|..|..+++.+.+|.+++.|..|..+.++. +.+++..-        ++.-.+-++|+|.|.+.+.-.
T Consensus       112 ~~~~lLDlGAGdGeit~~m~p~feevyATElS~tMr~rL~kk-~ynVl~~~--------ew~~t~~k~dli~clNlLDRc  182 (288)
T KOG3987|consen  112 EPVTLLDLGAGDGEITLRMAPTFEEVYATELSWTMRDRLKKK-NYNVLTEI--------EWLQTDVKLDLILCLNLLDRC  182 (288)
T ss_pred             CCeeEEeccCCCcchhhhhcchHHHHHHHHhhHHHHHHHhhc-CCceeeeh--------hhhhcCceeehHHHHHHHHhh
Confidence            346899999999999999999999999999999999988764 33333221        111134579999999999866


Q ss_pred             -ChhHHHHHHHHhhcCCCeEEEE
Q 037961          113 -DLPQFYKQVKWVLKKPSGVIAA  134 (262)
Q Consensus       113 -d~~~~l~~~~r~Lk~pgG~l~i  134 (262)
                       ++-+.++.+..+|++.+|.+++
T Consensus       183 ~~p~kLL~Di~~vl~psngrviv  205 (288)
T KOG3987|consen  183 FDPFKLLEDIHLVLAPSNGRVIV  205 (288)
T ss_pred             cChHHHHHHHHHHhccCCCcEEE
Confidence             9999999999999933888776

>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes

Probab=98.54  E-value=2.7e-07  Score=73.89  Aligned_cols=104  Identities=24%  Similarity=0.236  Sum_probs=63.8

Q ss_pred             CCCeEEEEcCcccHhHHHHHhhC---CeEEEEcCCHHHHHHHhcCCCceEEeCCCCc---hhhhhhcc-CCCCceeeEEE
Q 037961           33 KRNLAWDVGTRSGQAAASLAQIY---QHVIATDTSPKQLKFAIKLPNIRYQLTPTMS---ITELEQNV-ATQSSVDLVTI  105 (262)
Q Consensus        33 ~~~~vlDvGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~D~V~~  105 (262)
                      +..+|||+||++|.++..+.+++   .+|+|+|+.+.     ...+++..+.+|...   ...+.... -...++|+|+|
T Consensus        23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~-----~~~~~~~~i~~d~~~~~~~~~i~~~~~~~~~~~dlv~~   97 (181)
T PF01728_consen   23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM-----DPLQNVSFIQGDITNPENIKDIRKLLPESGEKFDLVLS   97 (181)
T ss_dssp             TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST-----GS-TTEEBTTGGGEEEEHSHHGGGSHGTTTCSESEEEE
T ss_pred             cccEEEEcCCcccceeeeeeecccccceEEEEecccc-----ccccceeeeecccchhhHHHhhhhhccccccCcceecc
Confidence            45899999999999999999987   79999999976     233455555555111   11222211 12368999999


Q ss_pred             ccccccC-----Chh-------HHHHHHHHhhcCCCeEEEEEecCCCcc
Q 037961          106 ASALHWF-----DLP-------QFYKQVKWVLKKPSGVIAAWTYTMPEI  142 (262)
Q Consensus       106 ~~~~~~~-----d~~-------~~l~~~~r~Lk~pgG~l~i~~~~~~~~  142 (262)
                      ..+....     |..       ..+.-+.+.|+ |||.+++-.+.....
T Consensus        98 D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~-~gG~~v~K~~~~~~~  145 (181)
T PF01728_consen   98 DMAPNVSGDRNIDEFISIRLILSQLLLALELLK-PGGTFVIKVFKGPEI  145 (181)
T ss_dssp             -------SSHHSSHHHHHHHHHHHHHHHHHHHC-TTEEEEEEESSSTTS
T ss_pred             ccccCCCCchhhHHHHHHHHHHHHHHHHHhhhc-CCCEEEEEeccCccH
Confidence            8754432     211       14455667799 999999866554443

RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....

>COG2521 Predicted archaeal methyltransferase [General function prediction only]

Probab=98.53  E-value=2.2e-07  Score=75.35  Aligned_cols=101  Identities=19%  Similarity=0.172  Sum_probs=78.2

Q ss_pred             CCCCeEEEEcCcccHhHHHHHhhCC-eEEEEcCCHHHHHHHhcC--------CCceEEeCCCCchhhhhhc--cCCCCce
Q 037961           32 PKRNLAWDVGTRSGQAAASLAQIYQ-HVIATDTSPKQLKFAIKL--------PNIRYQLTPTMSITELEQN--VATQSSV  100 (262)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~--------~~~~~~~~~~~~~~~~~~~--~~~~~~~  100 (262)
                      +.+.+|||.+.|-|..+...+++|+ +|+.++.+|..++.|+-+        .++..+.+|      +.+.  .+++.+|
T Consensus       133 ~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD------~~e~V~~~~D~sf  206 (287)
T COG2521         133 KRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGD------AYEVVKDFDDESF  206 (287)
T ss_pred             ccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccccccccEEeccc------HHHHHhcCCcccc
Confidence            3688999999999999999999999 999999999999988754        356777665      3221  2589999


Q ss_pred             eeEEEccccccC----ChhHHHHHHHHhhcCCCeEEEEEecCC
Q 037961          101 DLVTIASALHWF----DLPQFYKQVKWVLKKPSGVIAAWTYTM  139 (262)
Q Consensus       101 D~V~~~~~~~~~----d~~~~l~~~~r~Lk~pgG~l~i~~~~~  139 (262)
                      |.|+-...=.-.    =-+.+..|++|+|| |||.+.-+.-.+
T Consensus       207 DaIiHDPPRfS~AgeLYseefY~El~RiLk-rgGrlFHYvG~P  248 (287)
T COG2521         207 DAIIHDPPRFSLAGELYSEEFYRELYRILK-RGGRLFHYVGNP  248 (287)
T ss_pred             ceEeeCCCccchhhhHhHHHHHHHHHHHcC-cCCcEEEEeCCC
Confidence            999863222111    23558999999999 999998866544

>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated

Probab=98.52  E-value=2.4e-07  Score=82.16  Aligned_cols=123  Identities=11%  Similarity=0.089  Sum_probs=76.4

Q ss_pred             hHHHHHHHHhhCC-CCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhcC------CCceEEeCCCCc-hhhhh
Q 037961           20 PKELFKLIASKTP-KRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKL------PNIRYQLTPTMS-ITELE   91 (262)
Q Consensus        20 p~~~~~~l~~~~~-~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~-~~~~~   91 (262)
                      .+.+++.+.+... ....+||++||+|.++..+++...+|+|+|.++.+++.++++      .++++..+|... +....
T Consensus       192 ~e~l~~~v~~~~~~~~~~vLDl~~G~G~~sl~la~~~~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l~~~~  271 (362)
T PRK05031        192 NEKMLEWALDATKGSKGDLLELYCGNGNFTLALARNFRRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQAMN  271 (362)
T ss_pred             HHHHHHHHHHHhhcCCCeEEEEeccccHHHHHHHhhCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHh
Confidence            3567777777654 235699999999999999998888999999999999998863      367788877111 01110


Q ss_pred             hcc-C--------CCCceeeEEEccccccCChhHHHHHH-HHhhcCCCeEEEEEecCCCcccHHHHHh
Q 037961           92 QNV-A--------TQSSVDLVTIASALHWFDLPQFYKQV-KWVLKKPSGVIAAWTYTMPEINESVGAV  149 (262)
Q Consensus        92 ~~~-~--------~~~~~D~V~~~~~~~~~d~~~~l~~~-~r~Lk~pgG~l~i~~~~~~~~~~~~~~~  149 (262)
                      ... +        ...+||+|+....-  .   .+..++ ..+.+ |++.+++.+ ++..+.+.+..+
T Consensus       272 ~~~~~~~~~~~~~~~~~~D~v~lDPPR--~---G~~~~~l~~l~~-~~~ivyvSC-~p~tlarDl~~L  332 (362)
T PRK05031        272 GVREFNRLKGIDLKSYNFSTIFVDPPR--A---GLDDETLKLVQA-YERILYISC-NPETLCENLETL  332 (362)
T ss_pred             hcccccccccccccCCCCCEEEECCCC--C---CCcHHHHHHHHc-cCCEEEEEe-CHHHHHHHHHHH
Confidence            000 0        02258999964431  1   133344 33345 777766633 333443444444

>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]

Probab=98.52  E-value=1.2e-06  Score=74.72  Aligned_cols=96  Identities=16%  Similarity=0.286  Sum_probs=74.5

Q ss_pred             CCCCeEEEEcCcccHhHHHHHhhC--CeEEEEcCCHHHHHHHhcC----------CCceEEeCCCCchhhhhhc-cCCCC
Q 037961           32 PKRNLAWDVGTRSGQAAASLAQIY--QHVIATDTSPKQLKFAIKL----------PNIRYQLTPTMSITELEQN-VATQS   98 (262)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~----------~~~~~~~~~~~~~~~~~~~-~~~~~   98 (262)
                      +...+||-+|-|.|..++.+.++.  .+++.||+++..++.+++.          ++++.+.+|      +-.+ .-...
T Consensus        75 ~~pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~D------g~~~v~~~~~  148 (282)
T COG0421          75 PNPKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDD------GVEFLRDCEE  148 (282)
T ss_pred             CCCCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEecc------HHHHHHhCCC
Confidence            444699999999999999999985  6999999999999999973          445555554      3222 21234


Q ss_pred             ceeeEEEccccccCC------hhHHHHHHHHhhcCCCeEEEEE
Q 037961           99 SVDLVTIASALHWFD------LPQFYKQVKWVLKKPSGVIAAW  135 (262)
Q Consensus        99 ~~D~V~~~~~~~~~d------~~~~l~~~~r~Lk~pgG~l~i~  135 (262)
                      +||+|++...=. ..      ...+++.|.++|+ ++|+++..
T Consensus       149 ~fDvIi~D~tdp-~gp~~~Lft~eFy~~~~~~L~-~~Gi~v~q  189 (282)
T COG0421         149 KFDVIIVDSTDP-VGPAEALFTEEFYEGCRRALK-EDGIFVAQ  189 (282)
T ss_pred             cCCEEEEcCCCC-CCcccccCCHHHHHHHHHhcC-CCcEEEEe
Confidence            899999875544 22      3679999999999 99999986

>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.49  E-value=1.2e-06  Score=70.61  Aligned_cols=103  Identities=20%  Similarity=0.188  Sum_probs=71.8

Q ss_pred             CCCCCeEEEEcCcccHhHHHHHhhCC---eEEEEcCCHHHHHHHhcCCCceEEeCCCCchhhhhhc--cCCCCceeeEEE
Q 037961           31 TPKRNLAWDVGTRSGQAAASLAQIYQ---HVIATDTSPKQLKFAIKLPNIRYQLTPTMSITELEQN--VATQSSVDLVTI  105 (262)
Q Consensus        31 ~~~~~~vlDvGcG~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~D~V~~  105 (262)
                      +.++.+|+|+||-+|.+++.+++...   .|+|+|+.|-     ...+++.++++|.......+.+  -+...++|+|++
T Consensus        43 ~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~-----~~~~~V~~iq~d~~~~~~~~~l~~~l~~~~~DvV~s  117 (205)
T COG0293          43 FKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPM-----KPIPGVIFLQGDITDEDTLEKLLEALGGAPVDVVLS  117 (205)
T ss_pred             ecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccc-----ccCCCceEEeeeccCccHHHHHHHHcCCCCcceEEe
Confidence            46889999999999999999988632   4999999854     3457899999881111222222  135566899997


Q ss_pred             cccc----ccC-Chh-------HHHHHHHHhhcCCCeEEEEEecCC
Q 037961          106 ASAL----HWF-DLP-------QFYKQVKWVLKKPSGVIAAWTYTM  139 (262)
Q Consensus       106 ~~~~----~~~-d~~-------~~l~~~~r~Lk~pgG~l~i~~~~~  139 (262)
                      ..+-    +|. |..       .++.-+..+|+ |||.+++-.+..
T Consensus       118 D~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~-~~G~fv~K~fqg  162 (205)
T COG0293         118 DMAPNTSGNRSVDHARSMYLCELALEFALEVLK-PGGSFVAKVFQG  162 (205)
T ss_pred             cCCCCcCCCccccHHHHHHHHHHHHHHHHHeeC-CCCeEEEEEEeC
Confidence            5443    333 432       25667778999 999999844443

>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]

Probab=98.45  E-value=2.8e-07  Score=81.13  Aligned_cols=108  Identities=19%  Similarity=0.234  Sum_probs=84.3

Q ss_pred             HHhhCCCCCeEEEEcCcccHhHHHHHhh-CCeEEEEcCCHHHHHHHhcCCCceEEeCC-CCchhhhhhccCCCCceeeEE
Q 037961           27 IASKTPKRNLAWDVGTRSGQAAASLAQI-YQHVIATDTSPKQLKFAIKLPNIRYQLTP-TMSITELEQNVATQSSVDLVT  104 (262)
Q Consensus        27 l~~~~~~~~~vlDvGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~D~V~  104 (262)
                      +.....++..++|+|||.|.....++.. .+.++|+|.++..+..+.....-..+... .+.+.++..-|++++.||.|.
T Consensus       104 l~~~~~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~  183 (364)
T KOG1269|consen  104 LRESCFPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVR  183 (364)
T ss_pred             HhhcCcccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEE
Confidence            3333456667899999999999999886 58999999999998877643110111111 112356777889999999999


Q ss_pred             EccccccC-ChhHHHHHHHHhhcCCCeEEEEE
Q 037961          105 IASALHWF-DLPQFYKQVKWVLKKPSGVIAAW  135 (262)
Q Consensus       105 ~~~~~~~~-d~~~~l~~~~r~Lk~pgG~l~i~  135 (262)
                      +..+..+. +...+++|++|+++ |||.+++.
T Consensus       184 ~ld~~~~~~~~~~~y~Ei~rv~k-pGG~~i~~  214 (364)
T KOG1269|consen  184 FLEVVCHAPDLEKVYAEIYRVLK-PGGLFIVK  214 (364)
T ss_pred             EEeecccCCcHHHHHHHHhcccC-CCceEEeH
Confidence            99999999 99999999999999 99999983

>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family

Probab=98.45  E-value=9.5e-07  Score=71.56  Aligned_cols=98  Identities=17%  Similarity=0.194  Sum_probs=67.3

Q ss_pred             HHHHhhCCCCCeEEEEcCcccHhHHHHHh--hCCeEEEEcCCHHHHHHHhcC-------CCceEEeCCCCchhhhhhccC
Q 037961           25 KLIASKTPKRNLAWDVGTRSGQAAASLAQ--IYQHVIATDTSPKQLKFAIKL-------PNIRYQLTPTMSITELEQNVA   95 (262)
Q Consensus        25 ~~l~~~~~~~~~vlDvGcG~G~~~~~l~~--~~~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~~~~~~~   95 (262)
                      ..+.....++.+|+|+.||.|.++..+++  .++.|+++|++|..++.+++.       ..+....+|      +.....
T Consensus        93 ~Ri~~~v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D------~~~~~~  166 (200)
T PF02475_consen   93 RRIANLVKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGD------AREFLP  166 (200)
T ss_dssp             HHHHTC--TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-------GGG---
T ss_pred             HHHHhcCCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCC------HHHhcC
Confidence            35666678899999999999999999998  578899999999999988752       345566654      444432


Q ss_pred             CCCceeeEEEccccccCChhHHHHHHHHhhcCCCeEEE
Q 037961           96 TQSSVDLVTIASALHWFDLPQFYKQVKWVLKKPSGVIA  133 (262)
Q Consensus        96 ~~~~~D~V~~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~  133 (262)
                       .+.+|.|+++..-   ....++..+.++++ +||++-
T Consensus       167 -~~~~drvim~lp~---~~~~fl~~~~~~~~-~~g~ih  199 (200)
T PF02475_consen  167 -EGKFDRVIMNLPE---SSLEFLDAALSLLK-EGGIIH  199 (200)
T ss_dssp             -TT-EEEEEE--TS---SGGGGHHHHHHHEE-EEEEEE
T ss_pred             -ccccCEEEECChH---HHHHHHHHHHHHhc-CCcEEE
Confidence             7889999987542   22358888999999 898763

Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.

>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

Probab=98.43  E-value=2.4e-06  Score=65.14  Aligned_cols=94  Identities=24%  Similarity=0.307  Sum_probs=68.0

Q ss_pred             EEEEcCcccHhHHHHHhh---CCeEEEEcCCHHHHHHHhcCC---C---ceEEeCCCCchhhhh--hccCCC-CceeeEE
Q 037961           37 AWDVGTRSGQAAASLAQI---YQHVIATDTSPKQLKFAIKLP---N---IRYQLTPTMSITELE--QNVATQ-SSVDLVT  104 (262)
Q Consensus        37 vlDvGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~---~---~~~~~~~~~~~~~~~--~~~~~~-~~~D~V~  104 (262)
                      ++|+|||+|..+ .+...   +..++++|+++.++..++...   .   +.+...+      ..  ..++.. ..||++.
T Consensus        52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~d~~~  124 (257)
T COG0500          52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVAD------ALGGVLPFEDSASFDLVI  124 (257)
T ss_pred             eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEec------cccCCCCCCCCCceeEEe
Confidence            899999999976 33333   348999999999999855321   1   3455443      22  245555 4899995


Q ss_pred             EccccccCChhHHHHHHHHhhcCCCeEEEEEecC
Q 037961          105 IASALHWFDLPQFYKQVKWVLKKPSGVIAAWTYT  138 (262)
Q Consensus       105 ~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~~  138 (262)
                      +....++.+....+.++.++|+ |+|.+++....
T Consensus       125 ~~~~~~~~~~~~~~~~~~~~l~-~~g~~~~~~~~  157 (257)
T COG0500         125 SLLVLHLLPPAKALRELLRVLK-PGGRLVLSDLL  157 (257)
T ss_pred             eeeehhcCCHHHHHHHHHHhcC-CCcEEEEEecc
Confidence            5555566687889999999999 99999885544

>PRK11727 23S rRNA mA1618 methyltransferase; Provisional

Probab=98.42  E-value=7.1e-07  Score=77.38  Aligned_cols=77  Identities=16%  Similarity=0.208  Sum_probs=54.2

Q ss_pred             CCCeEEEEcCcccHhHHHHHhh--CCeEEEEcCCHHHHHHHhcC----C----CceEEe-CCCCchhhh-hhccCCCCce
Q 037961           33 KRNLAWDVGTRSGQAAASLAQI--YQHVIATDTSPKQLKFAIKL----P----NIRYQL-TPTMSITEL-EQNVATQSSV  100 (262)
Q Consensus        33 ~~~~vlDvGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~----~----~~~~~~-~~~~~~~~~-~~~~~~~~~~  100 (262)
                      ...++||||||+|.....++.+  +.+++|+|+++.+++.|+++    +    .+.+.. .+.   .++ .....+.+.|
T Consensus       114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~---~~i~~~i~~~~~~f  190 (321)
T PRK11727        114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDS---KAIFKGIIHKNERF  190 (321)
T ss_pred             CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccch---hhhhhcccccCCce
Confidence            4578999999999887777654  77999999999999999853    2    234432 110   111 1111246789


Q ss_pred             eeEEEccccccC
Q 037961          101 DLVTIASALHWF  112 (262)
Q Consensus       101 D~V~~~~~~~~~  112 (262)
                      |+|+|+..+|--
T Consensus       191 DlivcNPPf~~s  202 (321)
T PRK11727        191 DATLCNPPFHAS  202 (321)
T ss_pred             EEEEeCCCCcCc
Confidence            999999998865

>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]

Probab=98.39  E-value=2e-06  Score=72.03  Aligned_cols=83  Identities=10%  Similarity=0.017  Sum_probs=63.5

Q ss_pred             HHHHHHHhhC--CCCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhcC----CCceEEeCCCCchhhhhhccC
Q 037961           22 ELFKLIASKT--PKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKL----PNIRYQLTPTMSITELEQNVA   95 (262)
Q Consensus        22 ~~~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~----~~~~~~~~~~~~~~~~~~~~~   95 (262)
                      .+++.|....  .++..|||||+|.|.+|..|++++.+|+++|+++.+++..++.    .+++.+.+|      +-...+
T Consensus        17 ~v~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~~~~n~~vi~~D------aLk~d~   90 (259)
T COG0030          17 NVIDKIVEAANISPGDNVLEIGPGLGALTEPLLERAARVTAIEIDRRLAEVLKERFAPYDNLTVINGD------ALKFDF   90 (259)
T ss_pred             HHHHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhhcCeEEEEEeCHHHHHHHHHhcccccceEEEeCc------hhcCcc
Confidence            4456666554  3578999999999999999999999999999999999998864    678888877      222222


Q ss_pred             CCC-ceeeEEEccccc
Q 037961           96 TQS-SVDLVTIASALH  110 (262)
Q Consensus        96 ~~~-~~D~V~~~~~~~  110 (262)
                      +.- .++.|+++...+
T Consensus        91 ~~l~~~~~vVaNlPY~  106 (259)
T COG0030          91 PSLAQPYKVVANLPYN  106 (259)
T ss_pred             hhhcCCCEEEEcCCCc
Confidence            221 578888876654

>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional

Probab=98.38  E-value=2.1e-06  Score=76.49  Aligned_cols=108  Identities=16%  Similarity=0.155  Sum_probs=75.3

Q ss_pred             CChHHHHHHHHhhCC---CCCeEEEEcCcccHhHHHHHhhC--CeEEEEcCCHHHHHHHhcC------CCceEEeCCCCc
Q 037961           18 NYPKELFKLIASKTP---KRNLAWDVGTRSGQAAASLAQIY--QHVIATDTSPKQLKFAIKL------PNIRYQLTPTMS   86 (262)
Q Consensus        18 ~yp~~~~~~l~~~~~---~~~~vlDvGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~   86 (262)
                      .....+...+.....   +..+|||++||+|..+..++...  .+|+++|+++..++.++++      .++.+..+    
T Consensus        39 ~~nrdl~~~v~~~~~~~~~~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~----  114 (382)
T PRK04338         39 ELNRDISVLVLRAFGPKLPRESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNK----  114 (382)
T ss_pred             cchhhHHHHHHHHHHhhcCCCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhh----
Confidence            334455555544433   23589999999999999998753  3899999999999988753      23445544    


Q ss_pred             hhhhhhccCCCCceeeEEEccccccCChhHHHHHHHHhhcCCCeEEEEE
Q 037961           87 ITELEQNVATQSSVDLVTIASALHWFDLPQFYKQVKWVLKKPSGVIAAW  135 (262)
Q Consensus        87 ~~~~~~~~~~~~~~D~V~~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~  135 (262)
                        |+..+....+.||+|+....   =.+..++..+.+.++ +||.+.+.
T Consensus       115 --Da~~~l~~~~~fD~V~lDP~---Gs~~~~l~~al~~~~-~~gilyvS  157 (382)
T PRK04338        115 --DANALLHEERKFDVVDIDPF---GSPAPFLDSAIRSVK-RGGLLCVT  157 (382)
T ss_pred             --hHHHHHhhcCCCCEEEECCC---CCcHHHHHHHHHHhc-CCCEEEEE
Confidence              34433211457999998641   234678888888899 99999995

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=98.34  E-value=3.3e-06  Score=78.07  Aligned_cols=101  Identities=16%  Similarity=0.168  Sum_probs=78.0

Q ss_pred             CCCeEEEEcCcccHhHHHHHhhC--CeEEEEcCCHHHHHHHhc------CCCceEEeCCCCchhhhhhccCCCCceeeEE
Q 037961           33 KRNLAWDVGTRSGQAAASLAQIY--QHVIATDTSPKQLKFAIK------LPNIRYQLTPTMSITELEQNVATQSSVDLVT  104 (262)
Q Consensus        33 ~~~~vlDvGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~  104 (262)
                      ....+||||||.|.++..+|...  ..++|+|++..-+..+.+      ..|+.+..++   ...+... ++++++|.|+
T Consensus       347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~---~~~~~~~-~~~~sv~~i~  422 (506)
T PRK01544        347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNN---LDLILND-LPNNSLDGIY  422 (506)
T ss_pred             CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCC---HHHHHHh-cCcccccEEE
Confidence            56788999999999999999874  579999999998776542      3566666554   1112222 5789999999


Q ss_pred             EccccccC-C--------hhHHHHHHHHhhcCCCeEEEEEecC
Q 037961          105 IASALHWF-D--------LPQFYKQVKWVLKKPSGVIAAWTYT  138 (262)
Q Consensus       105 ~~~~~~~~-d--------~~~~l~~~~r~Lk~pgG~l~i~~~~  138 (262)
                      .++.=.|. .        ...+++.+.++|+ |||.|.+.+-.
T Consensus       423 i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk-~gG~i~~~TD~  464 (506)
T PRK01544        423 ILFPDPWIKNKQKKKRIFNKERLKILQDKLK-DNGNLVFASDI  464 (506)
T ss_pred             EECCCCCCCCCCccccccCHHHHHHHHHhcC-CCCEEEEEcCC
Confidence            99999887 2        2348999999999 99999985543

>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]

Probab=98.34  E-value=2.3e-06  Score=73.79  Aligned_cols=94  Identities=23%  Similarity=0.257  Sum_probs=76.8

Q ss_pred             CCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHh-cC-CCceEEeCCCCchhhhhhccCCCCceeeEEEcccccc
Q 037961           34 RNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAI-KL-PNIRYQLTPTMSITELEQNVATQSSVDLVTIASALHW  111 (262)
Q Consensus        34 ~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~~~  111 (262)
                      ...++|+|.|.|..+..+...+.+|-+++++...+-.+. .. ++|+.+.++-     +.++  |.  -|+|++-+++|+
T Consensus       178 v~~avDvGgGiG~v~k~ll~~fp~ik~infdlp~v~~~a~~~~~gV~~v~gdm-----fq~~--P~--~daI~mkWiLhd  248 (342)
T KOG3178|consen  178 VNVAVDVGGGIGRVLKNLLSKYPHIKGINFDLPFVLAAAPYLAPGVEHVAGDM-----FQDT--PK--GDAIWMKWILHD  248 (342)
T ss_pred             CceEEEcCCcHhHHHHHHHHhCCCCceeecCHHHHHhhhhhhcCCcceecccc-----cccC--CC--cCeEEEEeeccc
Confidence            578999999999999999999899999999998887655 45 7788887761     2333  33  369999999985


Q ss_pred             C---ChhHHHHHHHHhhcCCCeEEEEEec
Q 037961          112 F---DLPQFYKQVKWVLKKPSGVIAAWTY  137 (262)
Q Consensus       112 ~---d~~~~l~~~~r~Lk~pgG~l~i~~~  137 (262)
                      .   |..+++++|+..|+ |||.+++...
T Consensus       249 wtDedcvkiLknC~~sL~-~~GkIiv~E~  276 (342)
T KOG3178|consen  249 WTDEDCVKILKNCKKSLP-PGGKIIVVEN  276 (342)
T ss_pred             CChHHHHHHHHHHHHhCC-CCCEEEEEec
Confidence            5   56779999999999 9999998554

>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species

Probab=98.34  E-value=1.4e-06  Score=74.28  Aligned_cols=121  Identities=14%  Similarity=0.175  Sum_probs=77.4

Q ss_pred             HHHhhCCCCCeEEEEcCcccHhHHHHHhhCC-eEEEEcCCHHHHHHHhcC--------CCceEEeCCCCchhhhhhccCC
Q 037961           26 LIASKTPKRNLAWDVGTRSGQAAASLAQIYQ-HVIATDTSPKQLKFAIKL--------PNIRYQLTPTMSITELEQNVAT   96 (262)
Q Consensus        26 ~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~--------~~~~~~~~~~~~~~~~~~~~~~   96 (262)
                      ++..+ ..+.+|||+-|=||.++...+..|+ +|+.||.|..+++.++++        ..++++..|.+..  ...+. .
T Consensus       117 ~v~~~-~~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~--l~~~~-~  192 (286)
T PF10672_consen  117 WVRKY-AKGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKF--LKRLK-K  192 (286)
T ss_dssp             HHHHH-CTTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHH--HHHHH-H
T ss_pred             HHHHH-cCCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHH--HHHHh-c
Confidence            34443 4578999999999999999888886 799999999999999863        4677887772211  11111 2


Q ss_pred             CCceeeEEEccccc------cC-ChhHHHHHHHHhhcCCCeEEEEEecCCCcccHHHHHhhc
Q 037961           97 QSSVDLVTIASALH------WF-DLPQFYKQVKWVLKKPSGVIAAWTYTMPEINESVGAVFK  151 (262)
Q Consensus        97 ~~~~D~V~~~~~~~------~~-d~~~~l~~~~r~Lk~pgG~l~i~~~~~~~~~~~~~~~~~  151 (262)
                      .++||+|++...-.      -. |..+++..+.++|+ |||.|++++++...-.+.+.+...
T Consensus       193 ~~~fD~IIlDPPsF~k~~~~~~~~y~~L~~~a~~ll~-~gG~l~~~scs~~i~~~~l~~~~~  253 (286)
T PF10672_consen  193 GGRFDLIILDPPSFAKSKFDLERDYKKLLRRAMKLLK-PGGLLLTCSCSHHISPDFLLEAVA  253 (286)
T ss_dssp             TT-EEEEEE--SSEESSTCEHHHHHHHHHHHHHHTEE-EEEEEEEEE--TTS-HHHHHHHHH
T ss_pred             CCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHhcC-CCCEEEEEcCCcccCHHHHHHHHH
Confidence            46899999843321      11 44557889999999 999998866654332233444433

The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.

>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]

Probab=98.30  E-value=6.5e-06  Score=65.41  Aligned_cols=114  Identities=19%  Similarity=0.154  Sum_probs=81.1

Q ss_pred             hCCCC---hHHHHHHHHhhCCCCCeEEEEcCcccHhHHHHHhhCC-eEEEEcCCHHHHHHHhcC-------CCceEEeCC
Q 037961           15 ARPNY---PKELFKLIASKTPKRNLAWDVGTRSGQAAASLAQIYQ-HVIATDTSPKQLKFAIKL-------PNIRYQLTP   83 (262)
Q Consensus        15 ~rp~y---p~~~~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~-------~~~~~~~~~   83 (262)
                      .||+-   -+.++++|.+..-.+.++||+-+|+|.++...+++|+ +++.||.+...+...+++       .+..+...|
T Consensus        22 ~RPT~drVREalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~d  101 (187)
T COG0742          22 TRPTTDRVREALFNILAPDEIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEGEARVLRND  101 (187)
T ss_pred             cCCCchHHHHHHHHhccccccCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeec
Confidence            56654   3566777766323567889999999999999999875 799999999999988763       445555554


Q ss_pred             CCchhhhhhccC--CCCceeeEEEccccccC--ChhHHHHH--HHHhhcCCCeEEEE
Q 037961           84 TMSITELEQNVA--TQSSVDLVTIASALHWF--DLPQFYKQ--VKWVLKKPSGVIAA  134 (262)
Q Consensus        84 ~~~~~~~~~~~~--~~~~~D~V~~~~~~~~~--d~~~~l~~--~~r~Lk~pgG~l~i  134 (262)
                      .     ...+.-  ..++||+|+....+++-  +....+..  -..+|+ |+|.+++
T Consensus       102 a-----~~~L~~~~~~~~FDlVflDPPy~~~l~~~~~~~~~~~~~~~L~-~~~~iv~  152 (187)
T COG0742         102 A-----LRALKQLGTREPFDLVFLDPPYAKGLLDKELALLLLEENGWLK-PGALIVV  152 (187)
T ss_pred             H-----HHHHHhcCCCCcccEEEeCCCCccchhhHHHHHHHHHhcCCcC-CCcEEEE
Confidence            1     111111  22359999999999854  43444444  457799 9999998

>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase

Probab=98.29  E-value=4.6e-06  Score=66.66  Aligned_cols=102  Identities=21%  Similarity=0.194  Sum_probs=68.5

Q ss_pred             hHHHHHHHHhhC--CCCCeEEEEcCcccHhHHHHHhhCC--e---------EEEEcCCHHHHHHHhcC-------CCceE
Q 037961           20 PKELFKLIASKT--PKRNLAWDVGTRSGQAAASLAQIYQ--H---------VIATDTSPKQLKFAIKL-------PNIRY   79 (262)
Q Consensus        20 p~~~~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~~--~---------v~~vD~s~~~~~~a~~~-------~~~~~   79 (262)
                      .+.+...|+...  .++..+||--||+|.+....+..+.  .         ++|+|+++.+++.++++       ..+.+
T Consensus        13 ~~~lA~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~   92 (179)
T PF01170_consen   13 RPTLAAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDF   92 (179)
T ss_dssp             -HHHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEE
T ss_pred             CHHHHHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEE
Confidence            345555555544  4678999999999999987765422  2         78999999999998863       23445


Q ss_pred             EeCCCCchhhhhhccCCCCceeeEEEccccccC-Ch--------hHHHHHHHHhhcCC
Q 037961           80 QLTPTMSITELEQNVATQSSVDLVTIASALHWF-DL--------PQFYKQVKWVLKKP  128 (262)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~~~~-d~--------~~~l~~~~r~Lk~p  128 (262)
                      .+      .|+..+++.++++|.|+++..+--- ..        ..+++++.++|+ +
T Consensus        93 ~~------~D~~~l~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~-~  143 (179)
T PF01170_consen   93 IQ------WDARELPLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLK-P  143 (179)
T ss_dssp             EE--------GGGGGGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHST-T
T ss_pred             Ee------cchhhcccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCC-C
Confidence            54      3577777778899999999877643 21        226788889998 7

It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.

>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=98.28  E-value=5.8e-06  Score=74.68  Aligned_cols=121  Identities=15%  Similarity=0.160  Sum_probs=79.4

Q ss_pred             HHHHHHHHhhCC--CCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhcC------CCceEEeCCCCchhhhhh
Q 037961           21 KELFKLIASKTP--KRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKL------PNIRYQLTPTMSITELEQ   92 (262)
Q Consensus        21 ~~~~~~l~~~~~--~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~~~~   92 (262)
                      +.+++...+...  +..++||+=||.|.+++.|+++..+|+|+|+++++++.|+++      .|+.+..++      ++.
T Consensus       279 ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~------ae~  352 (432)
T COG2265         279 EKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKRVKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGD------AEE  352 (432)
T ss_pred             HHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhcccCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCC------HHH
Confidence            455666666654  567899999999999999999999999999999999999863      567888776      222


Q ss_pred             cc---CCCCceeeEEEccccccCChhHHHHHHHHhhcCCCeEEEEEecCCCcccHHHHHhhc
Q 037961           93 NV---ATQSSVDLVTIASALHWFDLPQFYKQVKWVLKKPSGVIAAWTYTMPEINESVGAVFK  151 (262)
Q Consensus        93 ~~---~~~~~~D~V~~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~~~~~~~~~~~~~~~  151 (262)
                      ..   .....+|.|+....=--+| +.+++.+.+. + |-.++++ +++..++.+.+..+..
T Consensus       353 ~~~~~~~~~~~d~VvvDPPR~G~~-~~~lk~l~~~-~-p~~IvYV-SCNP~TlaRDl~~L~~  410 (432)
T COG2265         353 FTPAWWEGYKPDVVVVDPPRAGAD-REVLKQLAKL-K-PKRIVYV-SCNPATLARDLAILAS  410 (432)
T ss_pred             HhhhccccCCCCEEEECCCCCCCC-HHHHHHHHhc-C-CCcEEEE-eCCHHHHHHHHHHHHh
Confidence            22   1345789999532211111 1244444443 4 6666766 4444444444544443

>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family

Probab=98.27  E-value=2.1e-05  Score=68.29  Aligned_cols=105  Identities=18%  Similarity=0.212  Sum_probs=71.7

Q ss_pred             HHHhhCCCCCeEEEEcCcccHhHHHHHhh------CCeEEEEcCCHHHHHHHhc------CCCceE--EeCCCCchhhhh
Q 037961           26 LIASKTPKRNLAWDVGTRSGQAAASLAQI------YQHVIATDTSPKQLKFAIK------LPNIRY--QLTPTMSITELE   91 (262)
Q Consensus        26 ~l~~~~~~~~~vlDvGcG~G~~~~~l~~~------~~~v~~vD~s~~~~~~a~~------~~~~~~--~~~~~~~~~~~~   91 (262)
                      .|...++++..++|+|||+|.=+..|.+.      ...++++|+|.++++.+.+      .+.+.+  +.++   ..+..
T Consensus        69 ~Ia~~i~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gd---y~~~l  145 (319)
T TIGR03439        69 DIAASIPSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGT---YDDGL  145 (319)
T ss_pred             HHHHhcCCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEec---HHHHH
Confidence            45556677888999999999988776652      3579999999999998764      244554  4444   11111


Q ss_pred             h-ccC--CCCceeeEE-EccccccCChhH---HHHHHHH-hhcCCCeEEEE
Q 037961           92 Q-NVA--TQSSVDLVT-IASALHWFDLPQ---FYKQVKW-VLKKPSGVIAA  134 (262)
Q Consensus        92 ~-~~~--~~~~~D~V~-~~~~~~~~d~~~---~l~~~~r-~Lk~pgG~l~i  134 (262)
                      . ++-  ......+|+ ...++..++++.   +++++.+ .|+ |||.|++
T Consensus       146 ~~l~~~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~-~~d~lLi  195 (319)
T TIGR03439       146 AWLKRPENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALS-PSDSFLI  195 (319)
T ss_pred             hhcccccccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCC-CCCEEEE
Confidence            1 211  123356665 456888886555   7889999 999 9999988

This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).

>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional

Probab=98.26  E-value=4.8e-06  Score=71.41  Aligned_cols=90  Identities=16%  Similarity=0.159  Sum_probs=65.5

Q ss_pred             hCCCChHHHHHHHHhhCCCCCeEEEEcCcccHhHHHHHhhC---CeEEEEcCCHHHHHHHhcC----CCceEEeCCCCch
Q 037961           15 ARPNYPKELFKLIASKTPKRNLAWDVGTRSGQAAASLAQIY---QHVIATDTSPKQLKFAIKL----PNIRYQLTPTMSI   87 (262)
Q Consensus        15 ~rp~yp~~~~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~----~~~~~~~~~~~~~   87 (262)
                      |.|...+++++.+..  .++..++|++||.|..|..+++..   .+|+|+|.++.|++.+++.    .++.++.++   +
T Consensus         3 H~pVll~Evl~~L~~--~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~~~ri~~i~~~---f   77 (296)
T PRK00050          3 HIPVLLDEVVDALAI--KPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKPFGRFTLVHGN---F   77 (296)
T ss_pred             CccccHHHHHHhhCC--CCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhccCCcEEEEeCC---H
Confidence            567777777777642  466799999999999999999874   6899999999999999863    367787776   1


Q ss_pred             hhhhhccCC-CCceeeEEEcccc
Q 037961           88 TELEQNVAT-QSSVDLVTIASAL  109 (262)
Q Consensus        88 ~~~~~~~~~-~~~~D~V~~~~~~  109 (262)
                      .++...... -.++|.|++...+
T Consensus        78 ~~l~~~l~~~~~~vDgIl~DLGv  100 (296)
T PRK00050         78 SNLKEVLAEGLGKVDGILLDLGV  100 (296)
T ss_pred             HHHHHHHHcCCCccCEEEECCCc
Confidence            122221111 1279999986655

>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2

Probab=98.26  E-value=2.7e-06  Score=75.26  Aligned_cols=123  Identities=15%  Similarity=0.146  Sum_probs=70.8

Q ss_pred             HHHHHHHHhhCC-CCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhcC------CCceEEeCCC--Cch--h-
Q 037961           21 KELFKLIASKTP-KRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKL------PNIRYQLTPT--MSI--T-   88 (262)
Q Consensus        21 ~~~~~~l~~~~~-~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~------~~~~~~~~~~--~~~--~-   88 (262)
                      +.+++.+.+.++ ....+||+-||.|.++..|++.+.+|+|+|.++.+++.|+++      .++++..++.  +..  . 
T Consensus       183 ~~l~~~~~~~l~~~~~~vlDlycG~G~fsl~la~~~~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~~~~~~~~~  262 (352)
T PF05958_consen  183 EKLYEQALEWLDLSKGDVLDLYCGVGTFSLPLAKKAKKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDAEDFAKALAK  262 (352)
T ss_dssp             HHHHHHHHHHCTT-TTEEEEES-TTTCCHHHHHCCSSEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--SHHCCCHHCC
T ss_pred             HHHHHHHHHHhhcCCCcEEEEeecCCHHHHHHHhhCCeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeeccchhHHHHh
Confidence            566777777664 234799999999999999999999999999999999999852      6788887651  100  0 


Q ss_pred             --h---hhhccCCCCceeeEEEccccccCChhH--HHHHHHHhhcCCCeEEEEEecCCCcccHHHHHhhc
Q 037961           89 --E---LEQNVATQSSVDLVTIASALHWFDLPQ--FYKQVKWVLKKPSGVIAAWTYTMPEINESVGAVFK  151 (262)
Q Consensus        89 --~---~~~~~~~~~~~D~V~~~~~~~~~d~~~--~l~~~~r~Lk~pgG~l~i~~~~~~~~~~~~~~~~~  151 (262)
                        +   .....+....+|+|+.       ||+.  +-.++.+.++++. .++-.++++.++.+.+..+.+
T Consensus       263 ~r~~~~~~~~~~~~~~~d~vil-------DPPR~G~~~~~~~~~~~~~-~ivYvSCnP~tlaRDl~~L~~  324 (352)
T PF05958_consen  263 AREFNRLKGIDLKSFKFDAVIL-------DPPRAGLDEKVIELIKKLK-RIVYVSCNPATLARDLKILKE  324 (352)
T ss_dssp             S-GGTTGGGS-GGCTTESEEEE----------TT-SCHHHHHHHHHSS-EEEEEES-HHHHHHHHHHHHC
T ss_pred             hHHHHhhhhhhhhhcCCCEEEE-------cCCCCCchHHHHHHHhcCC-eEEEEECCHHHHHHHHHHHhh
Confidence              0   0111122346899884       5444  2222222332153 444445555555555555543

1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.

>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=98.26  E-value=1.5e-05  Score=67.98  Aligned_cols=116  Identities=16%  Similarity=0.192  Sum_probs=68.7

Q ss_pred             HHHHHHHhhCC--CCCeEEEEcCcccHhHHHHHhh---CCeEEEEcCCHHHHHHHhcCC-CceEEeCCCCchhhhhhccC
Q 037961           22 ELFKLIASKTP--KRNLAWDVGTRSGQAAASLAQI---YQHVIATDTSPKQLKFAIKLP-NIRYQLTPTMSITELEQNVA   95 (262)
Q Consensus        22 ~~~~~l~~~~~--~~~~vlDvGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~   95 (262)
                      .+++.|....+  ...+|||+|||+|..+..+.+.   ..+++++|.|+.|++.++... .........+. ........
T Consensus        20 ~vl~El~~r~p~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~-~~~~~~~~   98 (274)
T PF09243_consen   20 RVLSELRKRLPDFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWR-RVLYRDFL   98 (274)
T ss_pred             HHHHHHHHhCcCCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhh-hhhhcccc
Confidence            44555555544  4578999999999877666553   458999999999999887531 11100000000 00110001


Q ss_pred             CCCceeeEEEccccccCChhH---HHHHHHHhhcCCCeEEEEEecCCCc
Q 037961           96 TQSSVDLVTIASALHWFDLPQ---FYKQVKWVLKKPSGVIAAWTYTMPE  141 (262)
Q Consensus        96 ~~~~~D~V~~~~~~~~~d~~~---~l~~~~r~Lk~pgG~l~i~~~~~~~  141 (262)
                      +-.+.|+|+++++|.-+....   +++.+.+.+. +  .|++...+.+.
T Consensus        99 ~~~~~DLvi~s~~L~EL~~~~r~~lv~~LW~~~~-~--~LVlVEpGt~~  144 (274)
T PF09243_consen   99 PFPPDDLVIASYVLNELPSAARAELVRSLWNKTA-P--VLVLVEPGTPA  144 (274)
T ss_pred             cCCCCcEEEEehhhhcCCchHHHHHHHHHHHhcc-C--cEEEEcCCChH
Confidence            222349999999998883332   5555555555 3  77776666543

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation

>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional

Probab=98.25  E-value=6.3e-06  Score=71.32  Aligned_cols=96  Identities=13%  Similarity=0.022  Sum_probs=73.4

Q ss_pred             CCCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhcCCCceEEeCCCCchhhhhhccCCCCceeeEEEcccccc
Q 037961           32 PKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKLPNIRYQLTPTMSITELEQNVATQSSVDLVTIASALHW  111 (262)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~~~  111 (262)
                      .++.++||+||++|.+|..++++|.+|++||.+ .|-......+++.....+.     +...| +.+.+|+|+|..+   
T Consensus       210 ~~g~~vlDLGAsPGGWT~~L~~rG~~V~AVD~g-~l~~~L~~~~~V~h~~~d~-----fr~~p-~~~~vDwvVcDmv---  279 (357)
T PRK11760        210 APGMRAVDLGAAPGGWTYQLVRRGMFVTAVDNG-PMAQSLMDTGQVEHLRADG-----FKFRP-PRKNVDWLVCDMV---  279 (357)
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHcCCEEEEEech-hcCHhhhCCCCEEEEeccC-----cccCC-CCCCCCEEEEecc---
Confidence            578899999999999999999999999999966 4555666778899988762     22222 2678999999766   


Q ss_pred             CChhHHHHHHHHhhcCCCe-EEEEEecC
Q 037961          112 FDLPQFYKQVKWVLKKPSG-VIAAWTYT  138 (262)
Q Consensus       112 ~d~~~~l~~~~r~Lk~pgG-~l~i~~~~  138 (262)
                      ..|..+.+-+.+.|. .|- .-+|++.-
T Consensus       280 e~P~rva~lm~~Wl~-~g~cr~aIfnLK  306 (357)
T PRK11760        280 EKPARVAELMAQWLV-NGWCREAIFNLK  306 (357)
T ss_pred             cCHHHHHHHHHHHHh-cCcccEEEEEEE
Confidence            367788899999998 552 24455544

>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.25  E-value=2e-06  Score=64.84  Aligned_cols=90  Identities=14%  Similarity=0.158  Sum_probs=64.2

Q ss_pred             CCCChHHHHHHHHhhCC--CCCeEEEEcCcccHhHHHHHhhC-CeEEEEcCCHHHHHHHhcC-----CCceEEeCCCCch
Q 037961           16 RPNYPKELFKLIASKTP--KRNLAWDVGTRSGQAAASLAQIY-QHVIATDTSPKQLKFAIKL-----PNIRYQLTPTMSI   87 (262)
Q Consensus        16 rp~yp~~~~~~l~~~~~--~~~~vlDvGcG~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~-----~~~~~~~~~~~~~   87 (262)
                      ||.....++..|.+..+  .+..++|+|||.|-++...+-.+ ..|+|+|++|+.++.++++     -++.+++.+    
T Consensus        29 ~p~iAasM~~~Ih~TygdiEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEvqidlLqcd----  104 (185)
T KOG3420|consen   29 RPHIAASMLYTIHNTYGDIEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEVQIDLLQCD----  104 (185)
T ss_pred             cHHHHHHHHHHHHhhhccccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhhhhheeeee----
Confidence            44444455555555444  67889999999999997766654 4689999999999999875     245555544    


Q ss_pred             hhhhhccCCCCceeeEEEcccccc
Q 037961           88 TELEQNVATQSSVDLVTIASALHW  111 (262)
Q Consensus        88 ~~~~~~~~~~~~~D~V~~~~~~~~  111 (262)
                        +.++-+..+.||.++.+..+.-
T Consensus       105 --ildle~~~g~fDtaviNppFGT  126 (185)
T KOG3420|consen  105 --ILDLELKGGIFDTAVINPPFGT  126 (185)
T ss_pred             --ccchhccCCeEeeEEecCCCCc
Confidence              3334345688999999988753

>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=98.24  E-value=1.2e-05  Score=62.96  Aligned_cols=99  Identities=24%  Similarity=0.338  Sum_probs=69.8

Q ss_pred             CCCeEEEEcCcccHhHHHHHhh---CCeEEEEcCCHHHHHHHhc-----CCCceEEeCCCCchhhhhhccCCCCceeeEE
Q 037961           33 KRNLAWDVGTRSGQAAASLAQI---YQHVIATDTSPKQLKFAIK-----LPNIRYQLTPTMSITELEQNVATQSSVDLVT  104 (262)
Q Consensus        33 ~~~~vlDvGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~  104 (262)
                      ....++|+|||+|..+..|++.   +..+.++|++|..++...+     .-++..+..|      +.. .+.++++|+++
T Consensus        43 ~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~td------l~~-~l~~~~VDvLv  115 (209)
T KOG3191|consen   43 NPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTD------LLS-GLRNESVDVLV  115 (209)
T ss_pred             CceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehh------HHh-hhccCCccEEE
Confidence            3677899999999999999885   4568899999999987543     2345566554      111 13458999998


Q ss_pred             Eccccc---------------cC---C----hhHHHHHHHHhhcCCCeEEEEEecCC
Q 037961          105 IASALH---------------WF---D----LPQFYKQVKWVLKKPSGVIAAWTYTM  139 (262)
Q Consensus       105 ~~~~~~---------------~~---d----~~~~l~~~~r~Lk~pgG~l~i~~~~~  139 (262)
                      .+...-               |.   |    .++++..+-.+|. |.|.+++.....
T Consensus       116 fNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLS-p~Gv~Ylv~~~~  171 (209)
T KOG3191|consen  116 FNPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILS-PRGVFYLVALRA  171 (209)
T ss_pred             ECCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcC-cCceEEeeehhh
Confidence            864432               33   1    3446667778889 999999866543

>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.17  E-value=2e-05  Score=64.50  Aligned_cols=97  Identities=23%  Similarity=0.236  Sum_probs=72.5

Q ss_pred             CCCCeEEEEcCcccHhHHHHHhhCC-eEEEEcCCHHHHH-HHhcCCCceEEeCCCCchhhhhhccCCCCceeeEEEcccc
Q 037961           32 PKRNLAWDVGTRSGQAAASLAQIYQ-HVIATDTSPKQLK-FAIKLPNIRYQLTPTMSITELEQNVATQSSVDLVTIASAL  109 (262)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~-~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~  109 (262)
                      .++.++||+|+.||.+|..+.++|+ +|+|+|.+-.++. ..|+.+++...+..+...-+-++  +. +..|++++.-+|
T Consensus        78 ~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kLR~d~rV~~~E~tN~r~l~~~~--~~-~~~d~~v~DvSF  154 (245)
T COG1189          78 VKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKLRNDPRVIVLERTNVRYLTPED--FT-EKPDLIVIDVSF  154 (245)
T ss_pred             CCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhHhcCCcEEEEecCChhhCCHHH--cc-cCCCeEEEEeeh
Confidence            5889999999999999999999975 7999999998887 45666666666544111101111  12 267999987764


Q ss_pred             ccCChhHHHHHHHHhhcCCCeEEEE
Q 037961          110 HWFDLPQFYKQVKWVLKKPSGVIAA  134 (262)
Q Consensus       110 ~~~d~~~~l~~~~r~Lk~pgG~l~i  134 (262)
                        +....++..+..+++ |+|.++.
T Consensus       155 --ISL~~iLp~l~~l~~-~~~~~v~  176 (245)
T COG1189         155 --ISLKLILPALLLLLK-DGGDLVL  176 (245)
T ss_pred             --hhHHHHHHHHHHhcC-CCceEEE
Confidence              477889999999999 8988775

>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G

Probab=98.16  E-value=2.3e-05  Score=62.79  Aligned_cols=90  Identities=23%  Similarity=0.316  Sum_probs=70.7

Q ss_pred             eEEEEcCcccHhHHHHHhh--CCeEEEEcCCHHHHHHHhc------CCCceEEeCCCCchhhhhhccCCCCceeeEEEcc
Q 037961           36 LAWDVGTRSGQAAASLAQI--YQHVIATDTSPKQLKFAIK------LPNIRYQLTPTMSITELEQNVATQSSVDLVTIAS  107 (262)
Q Consensus        36 ~vlDvGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~  107 (262)
                      +++|+|+|.|.-+..++=.  ..+++.+|.+..-+...+.      +.|+++..++      +++ +....+||+|++.-
T Consensus        51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R------~E~-~~~~~~fd~v~aRA  123 (184)
T PF02527_consen   51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGR------AEE-PEYRESFDVVTARA  123 (184)
T ss_dssp             EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-------HHH-TTTTT-EEEEEEES
T ss_pred             eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEee------ecc-cccCCCccEEEeeh
Confidence            7999999999999988753  5689999999988776653      4788898875      555 44678899999864


Q ss_pred             ccccCChhHHHHHHHHhhcCCCeEEEEEe
Q 037961          108 ALHWFDLPQFYKQVKWVLKKPSGVIAAWT  136 (262)
Q Consensus       108 ~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~  136 (262)
                      ..   +...+++-+...|+ +||.++++-
T Consensus       124 v~---~l~~l~~~~~~~l~-~~G~~l~~K  148 (184)
T PF02527_consen  124 VA---PLDKLLELARPLLK-PGGRLLAYK  148 (184)
T ss_dssp             SS---SHHHHHHHHGGGEE-EEEEEEEEE
T ss_pred             hc---CHHHHHHHHHHhcC-CCCEEEEEc
Confidence            42   66789999999999 999998854

Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.

>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length

Probab=98.12  E-value=9.8e-05  Score=62.37  Aligned_cols=117  Identities=15%  Similarity=0.222  Sum_probs=84.0

Q ss_pred             CCCCeEEEEcCcccHhHHHHHhh----CCeEEEEcCCHHHHHHHhc------CCCc-eEEeCCCCchhhhhhccCCCCce
Q 037961           32 PKRNLAWDVGTRSGQAAASLAQI----YQHVIATDTSPKQLKFAIK------LPNI-RYQLTPTMSITELEQNVATQSSV  100 (262)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~----~~~v~~vD~s~~~~~~a~~------~~~~-~~~~~~~~~~~~~~~~~~~~~~~  100 (262)
                      +..-+||||+||.|.........    -.+|...|.|+..++..++      +.++ +|.++|.+...+...+   +...
T Consensus       134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l---~p~P  210 (311)
T PF12147_consen  134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAAL---DPAP  210 (311)
T ss_pred             CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhcc---CCCC
Confidence            35678999999999998877654    2479999999999998875      3555 8999885544443333   4457


Q ss_pred             eeEEEccccccC-Chh---HHHHHHHHhhcCCCeEEEEEec-CCCcccHHHHHhhccc
Q 037961          101 DLVTIASALHWF-DLP---QFYKQVKWVLKKPSGVIAAWTY-TMPEINESVGAVFKPF  153 (262)
Q Consensus       101 D~V~~~~~~~~~-d~~---~~l~~~~r~Lk~pgG~l~i~~~-~~~~~~~~~~~~~~~~  153 (262)
                      ++++++..+..| |-+   ..++.+.+++. |||+++..+- .+|.. +.+..++..+
T Consensus       211 ~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~-pgG~lIyTgQPwHPQl-e~IAr~LtsH  266 (311)
T PF12147_consen  211 TLAIVSGLYELFPDNDLVRRSLAGLARALE-PGGYLIYTGQPWHPQL-EMIARVLTSH  266 (311)
T ss_pred             CEEEEecchhhCCcHHHHHHHHHHHHHHhC-CCcEEEEcCCCCCcch-HHHHHHHhcc
Confidence            999999998888 533   37889999999 9999987332 23332 3344444443

It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.

>COG2520 Predicted methyltransferase [General function prediction only]

Probab=98.11  E-value=9.7e-06  Score=70.55  Aligned_cols=104  Identities=14%  Similarity=0.165  Sum_probs=82.1

Q ss_pred             HHHhhCCCCCeEEEEcCcccHhHHHHHhhCCe-EEEEcCCHHHHHHHhcC-------CCceEEeCCCCchhhhhhccCCC
Q 037961           26 LIASKTPKRNLAWDVGTRSGQAAASLAQIYQH-VIATDTSPKQLKFAIKL-------PNIRYQLTPTMSITELEQNVATQ   97 (262)
Q Consensus        26 ~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~~~-v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~~~~~~~~~   97 (262)
                      .++.....+.+|+|.=||.|.++..++..++. |+++|++|..++.++++       ..+..+.+|      +.......
T Consensus       181 Rva~~v~~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD------~rev~~~~  254 (341)
T COG2520         181 RVAELVKEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGD------AREVAPEL  254 (341)
T ss_pred             HHHhhhcCCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCccceeeEEecc------HHHhhhcc
Confidence            45566678999999999999999999999876 99999999999998863       225556554      44444334


Q ss_pred             CceeeEEEccccccCChhHHHHHHHHhhcCCCeEEEEEecCC
Q 037961           98 SSVDLVTIASALHWFDLPQFYKQVKWVLKKPSGVIAAWTYTM  139 (262)
Q Consensus        98 ~~~D~V~~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~~~  139 (262)
                      +.+|.|+++..-   +..+++..+.+.++ +||++-.+...+
T Consensus       255 ~~aDrIim~~p~---~a~~fl~~A~~~~k-~~g~iHyy~~~~  292 (341)
T COG2520         255 GVADRIIMGLPK---SAHEFLPLALELLK-DGGIIHYYEFVP  292 (341)
T ss_pred             ccCCEEEeCCCC---cchhhHHHHHHHhh-cCcEEEEEeccc
Confidence            789999987542   55678999999999 899998876653

>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e

Probab=98.06  E-value=2.1e-05  Score=66.83  Aligned_cols=98  Identities=13%  Similarity=0.094  Sum_probs=70.0

Q ss_pred             HHHHHHHHhhCC--CCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhc----CCCceEEeCCCCchhhhhhcc
Q 037961           21 KELFKLIASKTP--KRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIK----LPNIRYQLTPTMSITELEQNV   94 (262)
Q Consensus        21 ~~~~~~l~~~~~--~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~----~~~~~~~~~~~~~~~~~~~~~   94 (262)
                      +.+.+.|.+.+.  ++..|||+|+|+|.+|..|++.+.+++++|+++.+++..++    .++++++.+|      +..+.
T Consensus        16 ~~~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~~~v~~vE~d~~~~~~L~~~~~~~~~~~vi~~D------~l~~~   89 (262)
T PF00398_consen   16 PNIADKIVDALDLSEGDTVLEIGPGPGALTRELLKRGKRVIAVEIDPDLAKHLKERFASNPNVEVINGD------FLKWD   89 (262)
T ss_dssp             HHHHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHSSEEEEEESSHHHHHHHHHHCTTCSSEEEEES-------TTTSC
T ss_pred             HHHHHHHHHhcCCCCCCEEEEeCCCCccchhhHhcccCcceeecCcHhHHHHHHHHhhhcccceeeecc------hhccc
Confidence            455666666553  68899999999999999999999999999999999998886    3788999887      22222


Q ss_pred             CC---CCceeeEEEccccccCChhHHHHHHHHhhc
Q 037961           95 AT---QSSVDLVTIASALHWFDLPQFYKQVKWVLK  126 (262)
Q Consensus        95 ~~---~~~~D~V~~~~~~~~~d~~~~l~~~~r~Lk  126 (262)
                      ..   ......|+++...  --....+.++...-+
T Consensus        90 ~~~~~~~~~~~vv~NlPy--~is~~il~~ll~~~~  122 (262)
T PF00398_consen   90 LYDLLKNQPLLVVGNLPY--NISSPILRKLLELYR  122 (262)
T ss_dssp             GGGHCSSSEEEEEEEETG--TGHHHHHHHHHHHGG
T ss_pred             cHHhhcCCceEEEEEecc--cchHHHHHHHhhccc
Confidence            22   2456677777554  222346666665434

g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....

>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]

Probab=98.06  E-value=7.8e-06  Score=63.86  Aligned_cols=72  Identities=21%  Similarity=0.263  Sum_probs=47.3

Q ss_pred             CeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhcC-------CCceEEeCCCCchhhhhhccCCCCceeeEEEcc
Q 037961           35 NLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKL-------PNIRYQLTPTMSITELEQNVATQSSVDLVTIAS  107 (262)
Q Consensus        35 ~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~  107 (262)
                      .+|+|+.||.|..+.++|+.+.+|+++|+++..++.|+.+       .++.++.+|-+.  -...+... ..+|+|+++.
T Consensus         1 ~~vlD~fcG~GGNtIqFA~~~~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~--~~~~~~~~-~~~D~vFlSP   77 (163)
T PF09445_consen    1 TTVLDAFCGVGGNTIQFARTFDRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFE--LLKRLKSN-KIFDVVFLSP   77 (163)
T ss_dssp             SEEEETT-TTSHHHHHHHHTT-EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHH--HGGGB-------SEEEE--
T ss_pred             CEEEEeccCcCHHHHHHHHhCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHH--HHhhcccc-ccccEEEECC
Confidence            3689999999999999999999999999999999999863       578999887111  11112111 1189999865


Q ss_pred             cc
Q 037961          108 AL  109 (262)
Q Consensus       108 ~~  109 (262)
                      .+
T Consensus        78 PW   79 (163)
T PF09445_consen   78 PW   79 (163)
T ss_dssp             -B
T ss_pred             CC
Confidence            54

Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.

>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.02  E-value=6.2e-05  Score=61.34  Aligned_cols=97  Identities=18%  Similarity=0.301  Sum_probs=71.2

Q ss_pred             CCCeEEEEcCcccHhHHHHHhh---CCeEEEEcCCHHHHHHHhc-------CCCceEEeCC-CCchhhhhhccCCCCcee
Q 037961           33 KRNLAWDVGTRSGQAAASLAQI---YQHVIATDTSPKQLKFAIK-------LPNIRYQLTP-TMSITELEQNVATQSSVD  101 (262)
Q Consensus        33 ~~~~vlDvGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~-------~~~~~~~~~~-~~~~~~~~~~~~~~~~~D  101 (262)
                      ...++||||.=||..+..+|..   +.+|+++|+++...+.+.+       ...+++++++ .-++....+- .+.++||
T Consensus        73 ~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~-~~~~tfD  151 (237)
T KOG1663|consen   73 NAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLAD-GESGTFD  151 (237)
T ss_pred             CCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhc-CCCCcee
Confidence            4567799999999998888764   7799999999998887754       2678888887 2111111111 2578999


Q ss_pred             eEEEccccccC-ChhHHHHHHHHhhcCCCeEEEE
Q 037961          102 LVTIASALHWF-DLPQFYKQVKWVLKKPSGVIAA  134 (262)
Q Consensus       102 ~V~~~~~~~~~-d~~~~l~~~~r~Lk~pgG~l~i  134 (262)
                      +++..   ||- .-...+.++.+++| +||+|++
T Consensus       152 faFvD---adK~nY~~y~e~~l~Llr-~GGvi~~  181 (237)
T KOG1663|consen  152 FAFVD---ADKDNYSNYYERLLRLLR-VGGVIVV  181 (237)
T ss_pred             EEEEc---cchHHHHHHHHHHHhhcc-cccEEEE
Confidence            99853   232 23347899999999 9999998

>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2

Probab=98.02  E-value=1.7e-05  Score=68.92  Aligned_cols=112  Identities=19%  Similarity=0.241  Sum_probs=71.8

Q ss_pred             hHHHHHHHHhhCC--CCCeEEEEcCcccHhHHHHHh---------hCCeEEEEcCCHHHHHHHhcC--------CCceEE
Q 037961           20 PKELFKLIASKTP--KRNLAWDVGTRSGQAAASLAQ---------IYQHVIATDTSPKQLKFAIKL--------PNIRYQ   80 (262)
Q Consensus        20 p~~~~~~l~~~~~--~~~~vlDvGcG~G~~~~~l~~---------~~~~v~~vD~s~~~~~~a~~~--------~~~~~~   80 (262)
                      |..+.+.+...+.  ++.+|+|-+||+|.+...+..         ...+++|+|+++.++..++-.        .+....
T Consensus        31 P~~i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~  110 (311)
T PF02384_consen   31 PREIVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINII  110 (311)
T ss_dssp             -HHHHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEE
T ss_pred             HHHHHHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcccccccccc
Confidence            7788887777653  456799999999999888766         246899999999999877631        223355


Q ss_pred             eCCCCchhhhhhccC-CCCceeeEEEccccc---cCCh-------------------hHHHHHHHHhhcCCCeEEEEEec
Q 037961           81 LTPTMSITELEQNVA-TQSSVDLVTIASALH---WFDL-------------------PQFYKQVKWVLKKPSGVIAAWTY  137 (262)
Q Consensus        81 ~~~~~~~~~~~~~~~-~~~~~D~V~~~~~~~---~~d~-------------------~~~l~~~~r~Lk~pgG~l~i~~~  137 (262)
                      .++.+     ..... ....||+|+++..+-   |.+.                   -.++..+.+.|+ +||++++...
T Consensus       111 ~~d~l-----~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk-~~G~~~~Ilp  184 (311)
T PF02384_consen  111 QGDSL-----ENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLK-PGGRAAIILP  184 (311)
T ss_dssp             ES-TT-----TSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEE-EEEEEEEEEE
T ss_pred             ccccc-----cccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcc-cccceeEEec
Confidence            55421     11111 257899999986663   2110                   137899999999 9999887443

1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.

>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed

Probab=98.02  E-value=7.5e-05  Score=68.27  Aligned_cols=100  Identities=16%  Similarity=0.215  Sum_probs=70.3

Q ss_pred             CCCCeEEEEcCcccHhHHHHHhhC---CeEEEEcCCHHHHHHHhcC------CCceEEeCCCCchhhhhhcc-CCCCcee
Q 037961           32 PKRNLAWDVGTRSGQAAASLAQIY---QHVIATDTSPKQLKFAIKL------PNIRYQLTPTMSITELEQNV-ATQSSVD  101 (262)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~~~~~~-~~~~~~D  101 (262)
                      .++.+|||++||+|.=|.+++...   ..|++.|+++.-++.++++      .++.+...|      ...+. ...+.||
T Consensus       112 ~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D------~~~~~~~~~~~fD  185 (470)
T PRK11933        112 NAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFD------GRVFGAALPETFD  185 (470)
T ss_pred             CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCc------hhhhhhhchhhcC
Confidence            577899999999999999998852   4799999999999877642      455555544      22221 1245799


Q ss_pred             eEEEcccc--------------ccC--C-------hhHHHHHHHHhhcCCCeEEEEEecC
Q 037961          102 LVTIASAL--------------HWF--D-------LPQFYKQVKWVLKKPSGVIAAWTYT  138 (262)
Q Consensus       102 ~V~~~~~~--------------~~~--d-------~~~~l~~~~r~Lk~pgG~l~i~~~~  138 (262)
                      .|+..-.+              .|-  +       ..+++..+.++|| |||+|+-.+++
T Consensus       186 ~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~Lk-pGG~LVYSTCT  244 (470)
T PRK11933        186 AILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALK-PGGTLVYSTCT  244 (470)
T ss_pred             eEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcC-CCcEEEEECCC
Confidence            99953222              122  1       1347889999999 99999765555

>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]

Probab=97.94  E-value=9.3e-05  Score=59.64  Aligned_cols=108  Identities=19%  Similarity=0.181  Sum_probs=80.3

Q ss_pred             HHHHHhhC-CCCCeEEEEcCcccHhHHHHHhh-CCeEEEEcCCHHHHHHHhc-----CCCceEEeCC-CCchhhhhhccC
Q 037961           24 FKLIASKT-PKRNLAWDVGTRSGQAAASLAQI-YQHVIATDTSPKQLKFAIK-----LPNIRYQLTP-TMSITELEQNVA   95 (262)
Q Consensus        24 ~~~l~~~~-~~~~~vlDvGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~-----~~~~~~~~~~-~~~~~~~~~~~~   95 (262)
                      +..+++.+ .++.+||.||-|-|.....+.++ -.+-+-++..|+.++..+.     ..++..+.+. +   ..+..  +
T Consensus        91 Mha~A~ai~tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~ek~nViil~g~We---Dvl~~--L  165 (271)
T KOG1709|consen   91 MHALAEAISTKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWREKENVIILEGRWE---DVLNT--L  165 (271)
T ss_pred             HHHHHHHHhhCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccccccceEEEecchH---hhhcc--c
Confidence            33444333 47899999999999999998876 4466789999999999885     3567666665 2   11222  4


Q ss_pred             CCCceeeEEEccc-cccCChhHHHHHHHHhhcCCCeEEEEEec
Q 037961           96 TQSSVDLVTIASA-LHWFDLPQFYKQVKWVLKKPSGVIAAWTY  137 (262)
Q Consensus        96 ~~~~~D~V~~~~~-~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~  137 (262)
                      +++.||-|+-..- -++-|...+.+.+.|+|| |+|++..++-
T Consensus       166 ~d~~FDGI~yDTy~e~yEdl~~~hqh~~rLLk-P~gv~SyfNg  207 (271)
T KOG1709|consen  166 PDKHFDGIYYDTYSELYEDLRHFHQHVVRLLK-PEGVFSYFNG  207 (271)
T ss_pred             cccCcceeEeechhhHHHHHHHHHHHHhhhcC-CCceEEEecC
Confidence            7888999986544 444488889999999999 9999987553

>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []

Probab=97.91  E-value=3.7e-05  Score=62.61  Aligned_cols=107  Identities=15%  Similarity=0.184  Sum_probs=58.9

Q ss_pred             HHHHHhhC--CCCCeEEEEcCcccHhHHHHHh-hC-CeEEEEcCCHHHHHHHhc---------------CCCceEEeCCC
Q 037961           24 FKLIASKT--PKRNLAWDVGTRSGQAAASLAQ-IY-QHVIATDTSPKQLKFAIK---------------LPNIRYQLTPT   84 (262)
Q Consensus        24 ~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~-~~-~~v~~vD~s~~~~~~a~~---------------~~~~~~~~~~~   84 (262)
                      +..+....  .+..+.+|+|||.|....+.+- .+ .+.+|||+.+...+.|..               ...+.+..+|-
T Consensus        31 ~~~il~~~~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdf  110 (205)
T PF08123_consen   31 VSKILDELNLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDF  110 (205)
T ss_dssp             HHHHHHHTT--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-T
T ss_pred             HHHHHHHhCCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCc
Confidence            33344443  4788999999999999887764 34 459999999998877653               13445555541


Q ss_pred             CchhhhhhccCCCCceeeEEEccccccCChhHHHHHHHHhhcCCCeEEEE
Q 037961           85 MSITELEQNVATQSSVDLVTIASALHWFDLPQFYKQVKWVLKKPSGVIAA  134 (262)
Q Consensus        85 ~~~~~~~~~~~~~~~~D~V~~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i  134 (262)
                      +. .+.....+  ...|+|++++.+---+....+.+...-|| +|-+++.
T Consensus       111 l~-~~~~~~~~--s~AdvVf~Nn~~F~~~l~~~L~~~~~~lk-~G~~IIs  156 (205)
T PF08123_consen  111 LD-PDFVKDIW--SDADVVFVNNTCFDPDLNLALAELLLELK-PGARIIS  156 (205)
T ss_dssp             TT-HHHHHHHG--HC-SEEEE--TTT-HHHHHHHHHHHTTS--TT-EEEE
T ss_pred             cc-cHhHhhhh--cCCCEEEEeccccCHHHHHHHHHHHhcCC-CCCEEEE
Confidence            11 11111111  24699999876532244446677777888 7776654

H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....

>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT)

Probab=97.87  E-value=0.0001  Score=62.24  Aligned_cols=112  Identities=16%  Similarity=0.163  Sum_probs=75.5

Q ss_pred             HHHHHHHHhhCC------CCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhc-------C-------------
Q 037961           21 KELFKLIASKTP------KRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIK-------L-------------   74 (262)
Q Consensus        21 ~~~~~~l~~~~~------~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~-------~-------------   74 (262)
                      +-+++.|....+      ...+||--|||.|.++-.++..|..+.|.|.|--|+-..+-       .             
T Consensus        38 ~~I~~~L~~~~p~~~~~~~~~~VLVPGsGLGRLa~Eia~~G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~s  117 (270)
T PF07942_consen   38 SPILDELESLFPPAGSDRSKIRVLVPGSGLGRLAWEIAKLGYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFS  117 (270)
T ss_pred             HHHHHHHHHhhcccccCCCccEEEEcCCCcchHHHHHhhccceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceeccc
Confidence            344555555544      34789999999999999999999999999999999754321       0             


Q ss_pred             ---------CCceEE-----e----CC--CCchhhhhhccCCC---CceeeEEEccccccC-ChhHHHHHHHHhhcCCCe
Q 037961           75 ---------PNIRYQ-----L----TP--TMSITELEQNVATQ---SSVDLVTIASALHWF-DLPQFYKQVKWVLKKPSG  130 (262)
Q Consensus        75 ---------~~~~~~-----~----~~--~~~~~~~~~~~~~~---~~~D~V~~~~~~~~~-d~~~~l~~~~r~Lk~pgG  130 (262)
                               ..+.+-     .    ..  ....+|+.+.-.++   ++||.|+..+-+--. +.-..++.+.++|| |||
T Consensus       118 n~~~~~dqlr~v~iPDv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA~Ni~~Yi~tI~~lLk-pgG  196 (270)
T PF07942_consen  118 NQKSREDQLRPVRIPDVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTAENIIEYIETIEHLLK-PGG  196 (270)
T ss_pred             CCCCHHHhCCceEeCCcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeechHHHHHHHHHHHHHhc-cCC
Confidence                     001111     0    00  12234555543334   799999988555544 55668999999999 999


Q ss_pred             EEE
Q 037961          131 VIA  133 (262)
Q Consensus       131 ~l~  133 (262)
                      ..+
T Consensus       197 ~WI  199 (270)
T PF07942_consen  197 YWI  199 (270)
T ss_pred             EEE
Confidence            443

This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].

>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family

Probab=97.86  E-value=8.2e-05  Score=69.41  Aligned_cols=90  Identities=19%  Similarity=0.143  Sum_probs=56.6

Q ss_pred             hHHHHHHHHhhC----C-----CCCeEEEEcCcccHhHHHHHhhC----------CeEEEEcCCHHHHHHHhcC----C-
Q 037961           20 PKELFKLIASKT----P-----KRNLAWDVGTRSGQAAASLAQIY----------QHVIATDTSPKQLKFAIKL----P-   75 (262)
Q Consensus        20 p~~~~~~l~~~~----~-----~~~~vlDvGcG~G~~~~~l~~~~----------~~v~~vD~s~~~~~~a~~~----~-   75 (262)
                      |..+.+.|....    +     ...+|||.|||+|.+...++.+.          .+++|+|+++..+..++.+    . 
T Consensus         9 P~~ia~~mv~~~~~~~~~~~~~~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~   88 (524)
T TIGR02987         9 PPDIAKAMVANLVNEIGKNDKSTKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFAL   88 (524)
T ss_pred             cHHHHHHHHHHHhhhcchhhcccceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCC
Confidence            566666665543    1     23589999999999998887532          4689999999999988753    2 


Q ss_pred             -CceEEeCCCCchhhhhhccCCCCceeeEEEccccc
Q 037961           76 -NIRYQLTPTMSITELEQNVATQSSVDLVTIASALH  110 (262)
Q Consensus        76 -~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~~  110 (262)
                       .+.....+.+. .......-..+.||+|+++..+-
T Consensus        89 ~~~~i~~~d~l~-~~~~~~~~~~~~fD~IIgNPPy~  123 (524)
T TIGR02987        89 LEINVINFNSLS-YVLLNIESYLDLFDIVITNPPYG  123 (524)
T ss_pred             CCceeeeccccc-ccccccccccCcccEEEeCCCcc
Confidence             23334333110 00000011135799999987664

Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.

>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]

Probab=97.86  E-value=0.0002  Score=64.49  Aligned_cols=110  Identities=18%  Similarity=0.183  Sum_probs=84.2

Q ss_pred             HHHHHHHHhhCCCCC-eEEEEcCcccHhHHHHHhhC-CeEEEEcCCHHHHHHHhc-----CCCceEEeCCCCchhhhhhc
Q 037961           21 KELFKLIASKTPKRN-LAWDVGTRSGQAAASLAQIY-QHVIATDTSPKQLKFAIK-----LPNIRYQLTPTMSITELEQN   93 (262)
Q Consensus        21 ~~~~~~l~~~~~~~~-~vlDvGcG~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~-----~~~~~~~~~~~~~~~~~~~~   93 (262)
                      -.+...|..+..+.. ++|-+|||.-.++..+-..| ..|+.+|.|+..++....     .+...+...      +...+
T Consensus        35 l~l~~~i~~~~~p~~~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~~~~~~~~~~~------d~~~l  108 (482)
T KOG2352|consen   35 LSLSGSIMKYLSPSDFKILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAKERPEMQMVEM------DMDQL  108 (482)
T ss_pred             HHHHHHHHHhhchhhceeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccccCCcceEEEEe------cchhc
Confidence            344555666666666 89999999999999988875 579999999999887653     245555554      46677


Q ss_pred             cCCCCceeeEEEccccccC--Chh---------HHHHHHHHhhcCCCeEEEEEec
Q 037961           94 VATQSSVDLVTIASALHWF--DLP---------QFYKQVKWVLKKPSGVIAAWTY  137 (262)
Q Consensus        94 ~~~~~~~D~V~~~~~~~~~--d~~---------~~l~~~~r~Lk~pgG~l~i~~~  137 (262)
                      .+++++||+|+--..++.+  |-.         ..+.++.|+|+ |||++....+
T Consensus       109 ~fedESFdiVIdkGtlDal~~de~a~~~~~~v~~~~~eVsrvl~-~~gk~~svtl  162 (482)
T KOG2352|consen  109 VFEDESFDIVIDKGTLDALFEDEDALLNTAHVSNMLDEVSRVLA-PGGKYISVTL  162 (482)
T ss_pred             cCCCcceeEEEecCccccccCCchhhhhhHHhhHHHhhHHHHhc-cCCEEEEEEe
Confidence            8899999999998888866  322         24679999999 9999886555

>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=97.85  E-value=3.2e-05  Score=64.91  Aligned_cols=98  Identities=18%  Similarity=0.187  Sum_probs=63.6

Q ss_pred             CCCeEEEEcCcccHhHHHHH-hhCCeEEEEcCCHHHHHHHhcC-------------------C---------------Cc
Q 037961           33 KRNLAWDVGTRSGQAAASLA-QIYQHVIATDTSPKQLKFAIKL-------------------P---------------NI   77 (262)
Q Consensus        33 ~~~~vlDvGcG~G~~~~~l~-~~~~~v~~vD~s~~~~~~a~~~-------------------~---------------~~   77 (262)
                      ++.++||||||+-..-...+ +.+.+|+..|.++..++..++-                   .               .|
T Consensus        56 ~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~~V  135 (256)
T PF01234_consen   56 KGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRRAV  135 (256)
T ss_dssp             -EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHHHE
T ss_pred             CCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHHhh
Confidence            55789999999965543333 4577899999999998866530                   0               01


Q ss_pred             e-EEeCCCCchhhhhh-ccCCC-----CceeeEEEccccccC--ChhH---HHHHHHHhhcCCCeEEEEEec
Q 037961           78 R-YQLTPTMSITELEQ-NVATQ-----SSVDLVTIASALHWF--DLPQ---FYKQVKWVLKKPSGVIAAWTY  137 (262)
Q Consensus        78 ~-~~~~~~~~~~~~~~-~~~~~-----~~~D~V~~~~~~~~~--d~~~---~l~~~~r~Lk~pgG~l~i~~~  137 (262)
                      . ++..|      ... -|+..     .+||+|++.+++.-.  |.+.   +++++.++|| |||.|++...
T Consensus       136 k~Vv~cD------V~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLk-pGG~Lil~~~  200 (256)
T PF01234_consen  136 KQVVPCD------VTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLK-PGGHLILAGV  200 (256)
T ss_dssp             EEEEE--------TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEE-EEEEEEEEEE
T ss_pred             ceEEEee------ccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcC-CCcEEEEEEE
Confidence            1 12222      111 11222     359999999999877  5554   8999999999 9999998443

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....

>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein

Probab=97.79  E-value=0.00014  Score=58.96  Aligned_cols=118  Identities=17%  Similarity=0.238  Sum_probs=78.1

Q ss_pred             HHHHHHHHhhCC------CCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhcCCCceEEeCCCCchhhhhhcc
Q 037961           21 KELFKLIASKTP------KRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKLPNIRYQLTPTMSITELEQNV   94 (262)
Q Consensus        21 ~~~~~~l~~~~~------~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~   94 (262)
                      ..++++|.....      ..-++|||||=+......-.. ..+|+.||+++.       .+.|.-        .|+...|
T Consensus        33 K~lv~wL~~~~~~~~~~~~~lrlLEVGals~~N~~s~~~-~fdvt~IDLns~-------~~~I~q--------qDFm~rp   96 (219)
T PF11968_consen   33 KWLVEWLKELGVRPKNGRPKLRLLEVGALSTDNACSTSG-WFDVTRIDLNSQ-------HPGILQ--------QDFMERP   96 (219)
T ss_pred             HHHHHHhhhhccccccccccceEEeecccCCCCcccccC-ceeeEEeecCCC-------CCCcee--------eccccCC
Confidence            566888876652      235889999976543322222 345999999862       233222        2344444


Q ss_pred             C---CCCceeeEEEccccccC-ChhH---HHHHHHHhhcCCCeE-----EEEEecCCC----c-c-cHHHHHhhccccc
Q 037961           95 A---TQSSVDLVTIASALHWF-DLPQ---FYKQVKWVLKKPSGV-----IAAWTYTMP----E-I-NESVGAVFKPFDT  155 (262)
Q Consensus        95 ~---~~~~~D~V~~~~~~~~~-d~~~---~l~~~~r~Lk~pgG~-----l~i~~~~~~----~-~-~~~~~~~~~~~~~  155 (262)
                      +   ++++||+|.++..+.++ ++..   .++.+.+.|+ |+|.     |.+......    . + .+.+..++..+..
T Consensus        97 lp~~~~e~FdvIs~SLVLNfVP~p~~RG~Ml~r~~~fL~-~~g~~~~~~LFlVlP~~Cv~NSRy~~~~~l~~im~~LGf  174 (219)
T PF11968_consen   97 LPKNESEKFDVISLSLVLNFVPDPKQRGEMLRRAHKFLK-PPGLSLFPSLFLVLPLPCVTNSRYMTEERLREIMESLGF  174 (219)
T ss_pred             CCCCcccceeEEEEEEEEeeCCCHHHHHHHHHHHHHHhC-CCCccCcceEEEEeCchHhhcccccCHHHHHHHHHhCCc
Confidence            4   47789999999999999 6666   8999999999 8998     776443321    1 1 3566777766544

>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins

Probab=97.79  E-value=0.00012  Score=61.60  Aligned_cols=135  Identities=18%  Similarity=0.160  Sum_probs=69.8

Q ss_pred             CeEEEEcCccc--HhHHHHHhh---CCeEEEEcCCHHHHHHHhc----CCC--ceEEeCCCCchhhhhhcc-----CCCC
Q 037961           35 NLAWDVGTRSG--QAAASLAQI---YQHVIATDTSPKQLKFAIK----LPN--IRYQLTPTMSITELEQNV-----ATQS   98 (262)
Q Consensus        35 ~~vlDvGcG~G--~~~~~l~~~---~~~v~~vD~s~~~~~~a~~----~~~--~~~~~~~~~~~~~~~~~~-----~~~~   98 (262)
                      ...||+|||--  ..+-.+++.   .++|+.+|.+|-.+..++.    .++  ..++.+|.-.-+.+-.-+     +.-.
T Consensus        70 rQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~~lD~~  149 (267)
T PF04672_consen   70 RQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAILAHPEVRGLLDFD  149 (267)
T ss_dssp             -EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCSHHHHCC--TT
T ss_pred             ceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcCHHHHhcCCCC
Confidence            56799999942  234445443   6899999999999998875    255  778888811111111100     1112


Q ss_pred             ceeeEEEccccccC-C---hhHHHHHHHHhhcCCCeEEEEEecCCCcc---cHHHHHhhcccccCCCCCCccccchhHHh
Q 037961           99 SVDLVTIASALHWF-D---LPQFYKQVKWVLKKPSGVIAAWTYTMPEI---NESVGAVFKPFDTIDCNPFWAPQRKLVDK  171 (262)
Q Consensus        99 ~~D~V~~~~~~~~~-d---~~~~l~~~~r~Lk~pgG~l~i~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (262)
                      .-=.|+....+||+ |   +..+++.+...|- ||..|++........   ...+.+++.+    ...+.+...+..+..
T Consensus       150 rPVavll~~vLh~v~D~~dp~~iv~~l~d~la-pGS~L~ish~t~d~~p~~~~~~~~~~~~----~~~~~~~Rs~~ei~~  224 (267)
T PF04672_consen  150 RPVAVLLVAVLHFVPDDDDPAGIVARLRDALA-PGSYLAISHATDDGAPERAEALEAVYAQ----AGSPGRPRSREEIAA  224 (267)
T ss_dssp             S--EEEECT-GGGS-CGCTHHHHHHHHHCCS--TT-EEEEEEEB-TTSHHHHHHHHHHHHH----CCS----B-HHHHHH
T ss_pred             CCeeeeeeeeeccCCCccCHHHHHHHHHHhCC-CCceEEEEecCCCCCHHHHHHHHHHHHc----CCCCceecCHHHHHH
Confidence            22356677889999 5   5558999999999 999999966554322   1233344433    333444444444555


Q ss_pred             cCC
Q 037961          172 KYM  174 (262)
Q Consensus       172 ~~~  174 (262)
                      .+.
T Consensus       225 ~f~  227 (267)
T PF04672_consen  225 FFD  227 (267)
T ss_dssp             CCT
T ss_pred             HcC
Confidence            544

; PDB: 3GIW_A 3GO4_A 2QE6_A.

>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]

Probab=97.75  E-value=0.00035  Score=57.09  Aligned_cols=116  Identities=21%  Similarity=0.204  Sum_probs=80.1

Q ss_pred             HHHHHHhhCCCChHHHHHH-HHhhC------CC-CCeEEEEcCcccHhHHHHHh--hCCeEEEEcCCHHHHHHHhc----
Q 037961            8 QANLYAVARPNYPKELFKL-IASKT------PK-RNLAWDVGTRSGQAAASLAQ--IYQHVIATDTSPKQLKFAIK----   73 (262)
Q Consensus         8 ~a~~Y~~~rp~yp~~~~~~-l~~~~------~~-~~~vlDvGcG~G~~~~~l~~--~~~~v~~vD~s~~~~~~a~~----   73 (262)
                      -.+.|.-..++-+.++... +.+.+      .. ..+++|||+|.|.-+..++=  ...+|+-+|....=+...++    
T Consensus        34 wN~~~NLt~~~~~~e~~~rHilDSl~~~~~~~~~~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~e  113 (215)
T COG0357          34 WNKAYNLTAIRDPEELWQRHILDSLVLLPYLDGKAKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKE  113 (215)
T ss_pred             hhHhcCCCCCCCHHHHHHHHHHHHhhhhhcccccCCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHH
Confidence            3345555666777665333 33322      23 58999999999999999773  34569999999877766653    


Q ss_pred             --CCCceEEeCCCCchhhhhhccCCCCc-eeeEEEccccccCChhHHHHHHHHhhcCCCeEEEE
Q 037961           74 --LPNIRYQLTPTMSITELEQNVATQSS-VDLVTIASALHWFDLPQFYKQVKWVLKKPSGVIAA  134 (262)
Q Consensus        74 --~~~~~~~~~~~~~~~~~~~~~~~~~~-~D~V~~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i  134 (262)
                        ++|++++.+.      +|+..- ... ||+|+|.-.   .+.....+-+..++| +||.++.
T Consensus       114 L~L~nv~i~~~R------aE~~~~-~~~~~D~vtsRAv---a~L~~l~e~~~pllk-~~g~~~~  166 (215)
T COG0357         114 LGLENVEIVHGR------AEEFGQ-EKKQYDVVTSRAV---ASLNVLLELCLPLLK-VGGGFLA  166 (215)
T ss_pred             hCCCCeEEehhh------Hhhccc-ccccCcEEEeehc---cchHHHHHHHHHhcc-cCCcchh
Confidence              4788888765      555431 123 999998543   256778888999999 8888765

>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase

Probab=97.74  E-value=0.00028  Score=62.79  Aligned_cols=92  Identities=16%  Similarity=0.095  Sum_probs=70.3

Q ss_pred             CeEEEEcCcccHhHHHHHhh--C-CeEEEEcCCHHHHHHHhcC------CCceEEeCCCCchhhhhhc-cCCCCceeeEE
Q 037961           35 NLAWDVGTRSGQAAASLAQI--Y-QHVIATDTSPKQLKFAIKL------PNIRYQLTPTMSITELEQN-VATQSSVDLVT  104 (262)
Q Consensus        35 ~~vlDvGcG~G~~~~~l~~~--~-~~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~~~~~-~~~~~~~D~V~  104 (262)
                      -+|||+.||+|..+...+..  + .+|+++|+++..++.++++      .++.+...|      +..+ .-....||+|.
T Consensus        46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~D------a~~~l~~~~~~fDvId  119 (374)
T TIGR00308        46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNED------AANVLRYRNRKFHVID  119 (374)
T ss_pred             CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchh------HHHHHHHhCCCCCEEE
Confidence            57999999999999999886  3 5899999999999988763      235555554      3322 11235799999


Q ss_pred             EccccccCChhHHHHHHHHhhcCCCeEEEEEe
Q 037961          105 IASALHWFDLPQFYKQVKWVLKKPSGVIAAWT  136 (262)
Q Consensus       105 ~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~  136 (262)
                      ... +.  .+..++..+.+.++ +||.|.+..
T Consensus       120 lDP-fG--s~~~fld~al~~~~-~~glL~vTa  147 (374)
T TIGR00308       120 IDP-FG--TPAPFVDSAIQASA-ERGLLLVTA  147 (374)
T ss_pred             eCC-CC--CcHHHHHHHHHhcc-cCCEEEEEe
Confidence            865 32  45679999999999 999999953

This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.

>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]

Probab=97.66  E-value=0.00053  Score=55.92  Aligned_cols=109  Identities=24%  Similarity=0.205  Sum_probs=73.7

Q ss_pred             HHHHHHHHhhC-----CCCCeEEEEcCcccHhHHHHHhh---CCeEEEEcCCH----HHHHHHhcCCCceEEeCC-CCch
Q 037961           21 KELFKLIASKT-----PKRNLAWDVGTRSGQAAASLAQI---YQHVIATDTSP----KQLKFAIKLPNIRYQLTP-TMSI   87 (262)
Q Consensus        21 ~~~~~~l~~~~-----~~~~~vlDvGcG~G~~~~~l~~~---~~~v~~vD~s~----~~~~~a~~~~~~~~~~~~-~~~~   87 (262)
                      .++...|..-+     +++..||-+|+.+|....+++.-   ...|.||+.|+    +.+..|++++|+--+..| ..+ 
T Consensus        56 SKLaAai~~Gl~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~NIiPIl~DAr~P-  134 (229)
T PF01269_consen   56 SKLAAAILKGLENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRPNIIPILEDARHP-  134 (229)
T ss_dssp             -HHHHHHHTT-S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHSTTEEEEES-TTSG-
T ss_pred             hHHHHHHHcCccccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCCceeeeeccCCCh-
Confidence            66666665433     48899999999999999999885   34799999999    556677788898877776 222 


Q ss_pred             hhhhhccCCCCceeeEEEccccccCCh-hHHHHHHHHhhcCCCeEEEEEe
Q 037961           88 TELEQNVATQSSVDLVTIASALHWFDL-PQFYKQVKWVLKKPSGVIAAWT  136 (262)
Q Consensus        88 ~~~~~~~~~~~~~D~V~~~~~~~~~d~-~~~l~~~~r~Lk~pgG~l~i~~  136 (262)
                         +....--+.+|+|++.-+ + -|. +-++.++...|| +||.+++..
T Consensus       135 ---~~Y~~lv~~VDvI~~DVa-Q-p~Qa~I~~~Na~~fLk-~gG~~~i~i  178 (229)
T PF01269_consen  135 ---EKYRMLVEMVDVIFQDVA-Q-PDQARIAALNARHFLK-PGGHLIISI  178 (229)
T ss_dssp             ---GGGTTTS--EEEEEEE-S-S-TTHHHHHHHHHHHHEE-EEEEEEEEE
T ss_pred             ---HHhhcccccccEEEecCC-C-hHHHHHHHHHHHhhcc-CCcEEEEEE
Confidence               111112348999998755 1 133 337778888999 999999843

It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....

>COG4076 Predicted RNA methylase [General function prediction only]

Probab=97.64  E-value=0.00011  Score=57.91  Aligned_cols=90  Identities=19%  Similarity=0.123  Sum_probs=67.5

Q ss_pred             CeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhcC------CCceEEeCCCCchhhhhhccCCCCceeeEEEccc
Q 037961           35 NLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKL------PNIRYQLTPTMSITELEQNVATQSSVDLVTIASA  108 (262)
Q Consensus        35 ~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~  108 (262)
                      .++.|+|+|+|.++...+....+|++++.+|.-.+.|.++      .+++++++|      +.+..+  ...|+|+|-..
T Consensus        34 d~~~DLGaGsGiLs~~Aa~~A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gD------A~~y~f--e~ADvvicEml  105 (252)
T COG4076          34 DTFADLGAGSGILSVVAAHAAERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGD------ARDYDF--ENADVVICEML  105 (252)
T ss_pred             hceeeccCCcchHHHHHHhhhceEEEEecCcHHHHHhhhcCCCCCCcceEEEecc------cccccc--cccceeHHHHh
Confidence            6789999999999999988888999999999999999874      467777655      555544  34688887422


Q ss_pred             ccc-C--ChhHHHHHHHHhhcCCCeEEE
Q 037961          109 LHW-F--DLPQFYKQVKWVLKKPSGVIA  133 (262)
Q Consensus       109 ~~~-~--d~~~~l~~~~r~Lk~pgG~l~  133 (262)
                      =-- +  ....++..+...|| -.++++
T Consensus       106 DTaLi~E~qVpV~n~vleFLr-~d~tii  132 (252)
T COG4076         106 DTALIEEKQVPVINAVLEFLR-YDPTII  132 (252)
T ss_pred             hHHhhcccccHHHHHHHHHhh-cCCccc
Confidence            111 1  23447888888889 788876

>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]

Probab=97.59  E-value=0.00069  Score=60.02  Aligned_cols=103  Identities=21%  Similarity=0.273  Sum_probs=69.5

Q ss_pred             CCCCeEEEEcCcccHhHHHHHhhC----CeEEEEcCCHHHHHHHhcC------CCceEEeCCCCchhhhhhccCCCCcee
Q 037961           32 PKRNLAWDVGTRSGQAAASLAQIY----QHVIATDTSPKQLKFAIKL------PNIRYQLTPTMSITELEQNVATQSSVD  101 (262)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~~----~~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~D  101 (262)
                      .++.+|||+.+++|.=|.++++..    ..|+++|.++.-++..+.+      .++.....|.   ..........++||
T Consensus       155 ~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~---~~~~~~~~~~~~fD  231 (355)
T COG0144         155 KPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDA---RRLAELLPGGEKFD  231 (355)
T ss_pred             CCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEeccc---ccccccccccCcCc
Confidence            477999999999999999998864    4579999999888877642      3444555441   00111112233699


Q ss_pred             eEEEcccc------------ccC-C----------hhHHHHHHHHhhcCCCeEEEEEecC
Q 037961          102 LVTIASAL------------HWF-D----------LPQFYKQVKWVLKKPSGVIAAWTYT  138 (262)
Q Consensus       102 ~V~~~~~~------------~~~-d----------~~~~l~~~~r~Lk~pgG~l~i~~~~  138 (262)
                      .|+..-.+            -|- .          ..+++..+.++|| |||.|+..+++
T Consensus       232 ~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk-~GG~LVYSTCS  290 (355)
T COG0144         232 RILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLK-PGGVLVYSTCS  290 (355)
T ss_pred             EEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcC-CCCEEEEEccC
Confidence            99863221            132 2          2237889999999 99999986665

>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]

Probab=97.56  E-value=0.00018  Score=65.05  Aligned_cols=63  Identities=24%  Similarity=0.296  Sum_probs=52.9

Q ss_pred             HHHHHHHHhhC--CCCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhcC------CCceEEeCC
Q 037961           21 KELFKLIASKT--PKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKL------PNIRYQLTP   83 (262)
Q Consensus        21 ~~~~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~------~~~~~~~~~   83 (262)
                      +.++..+.+..  +.+..++|+-||||.++..+++...+|+|++++++.++.|+.+      .|.+|+++.
T Consensus       369 evLys~i~e~~~l~~~k~llDv~CGTG~iglala~~~~~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gq  439 (534)
T KOG2187|consen  369 EVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARGVKRVIGVEISPDAVEDAEKNAQINGISNATFIVGQ  439 (534)
T ss_pred             HHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhccccceeeeecChhhcchhhhcchhcCccceeeeecc
Confidence            44555666554  5778999999999999999999999999999999999999864      577888774

>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]

Probab=97.52  E-value=0.00043  Score=60.11  Aligned_cols=109  Identities=17%  Similarity=0.215  Sum_probs=76.2

Q ss_pred             ChHHHHHHHHhhCCCCCeEEEEcCcccHhHHHHHhh--CCeEEEEcCCHHHHHHHhc-------------CCCceEEeCC
Q 037961           19 YPKELFKLIASKTPKRNLAWDVGTRSGQAAASLAQI--YQHVIATDTSPKQLKFAIK-------------LPNIRYQLTP   83 (262)
Q Consensus        19 yp~~~~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~-------------~~~~~~~~~~   83 (262)
                      |.+.+.---.+..+...+||-+|-|.|-..+.+.+.  ..+|+-+|++|.|++.+++             .+++.++..|
T Consensus       275 YhEsLV~pals~~~~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dD  354 (508)
T COG4262         275 YHESLVYPALSSVRGARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDD  354 (508)
T ss_pred             hhheeeecccccccccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEecc
Confidence            434433333344456688999999999999999986  5699999999999999883             1667777765


Q ss_pred             CCchhhhhhc-cCCCCceeeEEEccc------cccCChhHHHHHHHHhhcCCCeEEEE
Q 037961           84 TMSITELEQN-VATQSSVDLVTIASA------LHWFDLPQFYKQVKWVLKKPSGVIAA  134 (262)
Q Consensus        84 ~~~~~~~~~~-~~~~~~~D~V~~~~~------~~~~d~~~~l~~~~r~Lk~pgG~l~i  134 (262)
                            +-+| .-....||.|+....      +.-+=-.++..-+.|.|+ ++|.+++
T Consensus       355 ------Af~wlr~a~~~fD~vIVDl~DP~tps~~rlYS~eFY~ll~~~l~-e~Gl~Vv  405 (508)
T COG4262         355 ------AFQWLRTAADMFDVVIVDLPDPSTPSIGRLYSVEFYRLLSRHLA-ETGLMVV  405 (508)
T ss_pred             ------HHHHHHhhcccccEEEEeCCCCCCcchhhhhhHHHHHHHHHhcC-cCceEEE
Confidence                  2222 123458999997532      111112346778888999 9999998

>COG3897 Predicted methyltransferase [General function prediction only]

Probab=97.51  E-value=0.0012  Score=52.62  Aligned_cols=108  Identities=16%  Similarity=0.099  Sum_probs=69.4

Q ss_pred             HHHHHhhCC--CCCeEEEEcCcccHhHHHHHhhCC-eEEEEcCCHHHHHHHhcCC---CceEEeCCCCchhhhhhccCCC
Q 037961           24 FKLIASKTP--KRNLAWDVGTRSGQAAASLAQIYQ-HVIATDTSPKQLKFAIKLP---NIRYQLTPTMSITELEQNVATQ   97 (262)
Q Consensus        24 ~~~l~~~~~--~~~~vlDvGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~---~~~~~~~~~~~~~~~~~~~~~~   97 (262)
                      .+++..+..  .+.+|||+|+|+|..+...+..|+ .|++.|+.|...+..+-+.   .+.+....      .+-+. .+
T Consensus        68 AR~i~~~PetVrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv~i~~~~------~d~~g-~~  140 (218)
T COG3897          68 ARYIDDHPETVRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGVSILFTH------ADLIG-SP  140 (218)
T ss_pred             HHHHhcCccccccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhccceeEEee------ccccC-CC
Confidence            444444432  678999999999999999998876 7899999977666555432   22222111      11223 67


Q ss_pred             CceeeEEEccccccC-ChhHHHHHHHHhhcCCCeEEEE-EecCCC
Q 037961           98 SSVDLVTIASALHWF-DLPQFYKQVKWVLKKPSGVIAA-WTYTMP  140 (262)
Q Consensus        98 ~~~D~V~~~~~~~~~-d~~~~l~~~~r~Lk~pgG~l~i-~~~~~~  140 (262)
                      ..||+|+++-.+.-- -..+++. +.+.|+ ..|.-++ .....+
T Consensus       141 ~~~Dl~LagDlfy~~~~a~~l~~-~~~~l~-~~g~~vlvgdp~R~  183 (218)
T COG3897         141 PAFDLLLAGDLFYNHTEADRLIP-WKDRLA-EAGAAVLVGDPGRA  183 (218)
T ss_pred             cceeEEEeeceecCchHHHHHHH-HHHHHH-hCCCEEEEeCCCCC
Confidence            789999988777544 4455666 777777 5555444 443333

>KOG2730 consensus Methylase [General function prediction only]

Probab=97.50  E-value=0.00014  Score=58.82  Aligned_cols=87  Identities=18%  Similarity=0.162  Sum_probs=65.8

Q ss_pred             hHHHHHHHHhhCC---CCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhcC-------CCceEEeCCCCchhh
Q 037961           20 PKELFKLIASKTP---KRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKL-------PNIRYQLTPTMSITE   89 (262)
Q Consensus        20 p~~~~~~l~~~~~---~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~   89 (262)
                      |+.+...++....   ....|+|.-||.|..+.+.+.++..|+++|++|.-+..|+.+       ..+.|+++|.+  ..
T Consensus        78 pe~ia~~iA~~v~~~~~~~~iidaf~g~gGntiqfa~~~~~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~l--d~  155 (263)
T KOG2730|consen   78 PEKIAEHIANRVVACMNAEVIVDAFCGVGGNTIQFALQGPYVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFL--DL  155 (263)
T ss_pred             cHHHHHHHHHHHHHhcCcchhhhhhhcCCchHHHHHHhCCeEEEEeccHHHHHHHhccceeecCCceeEEEechHH--HH
Confidence            5666666666542   557789999999999999999999999999999999999974       57888888732  22


Q ss_pred             hhhccCCCCceeeEEEccc
Q 037961           90 LEQNVATQSSVDLVTIASA  108 (262)
Q Consensus        90 ~~~~~~~~~~~D~V~~~~~  108 (262)
                      +..+.+....+|+|..+..
T Consensus       156 ~~~lq~~K~~~~~vf~spp  174 (263)
T KOG2730|consen  156 ASKLKADKIKYDCVFLSPP  174 (263)
T ss_pred             HHHHhhhhheeeeeecCCC
Confidence            4445555555777765444

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=97.47  E-value=0.0015  Score=63.12  Aligned_cols=112  Identities=15%  Similarity=0.107  Sum_probs=72.3

Q ss_pred             hHHHHHHHHhhC---CCCCeEEEEcCcccHhHHHHHhh------------------------------------------
Q 037961           20 PKELFKLIASKT---PKRNLAWDVGTRSGQAAASLAQI------------------------------------------   54 (262)
Q Consensus        20 p~~~~~~l~~~~---~~~~~vlDvGcG~G~~~~~l~~~------------------------------------------   54 (262)
                      .+.+...|+...   .++..++|.+||+|.+....+..                                          
T Consensus       174 ~etlAaa~l~~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~  253 (702)
T PRK11783        174 KENLAAAILLRSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLA  253 (702)
T ss_pred             cHHHHHHHHHHcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhccc
Confidence            345555554443   35678999999999998775431                                          


Q ss_pred             --CCeEEEEcCCHHHHHHHhcC-------CCceEEeCCCCchhhhhhccC--CCCceeeEEEccccccC--C---hhHHH
Q 037961           55 --YQHVIATDTSPKQLKFAIKL-------PNIRYQLTPTMSITELEQNVA--TQSSVDLVTIASALHWF--D---LPQFY  118 (262)
Q Consensus        55 --~~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~~~~~~~--~~~~~D~V~~~~~~~~~--d---~~~~l  118 (262)
                        ..+++|+|+++.+++.|+++       ..+.+..+|      +.+++.  ..+++|+|+++....--  +   ...++
T Consensus       254 ~~~~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D------~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY  327 (702)
T PRK11783        254 ELPSKFYGSDIDPRVIQAARKNARRAGVAELITFEVKD------VADLKNPLPKGPTGLVISNPPYGERLGEEPALIALY  327 (702)
T ss_pred             ccCceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCC------hhhcccccccCCCCEEEECCCCcCccCchHHHHHHH
Confidence              12689999999999999864       235666654      444332  23579999999776422  2   23344


Q ss_pred             HHHHHh---hcCCCeEEEEEecC
Q 037961          119 KQVKWV---LKKPSGVIAAWTYT  138 (262)
Q Consensus       119 ~~~~r~---Lk~pgG~l~i~~~~  138 (262)
                      +++.+.   .. +|+.+++.+..
T Consensus       328 ~~lg~~lk~~~-~g~~~~llt~~  349 (702)
T PRK11783        328 SQLGRRLKQQF-GGWNAALFSSS  349 (702)
T ss_pred             HHHHHHHHHhC-CCCeEEEEeCC
Confidence            444444   44 78888875543

>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]

Probab=97.34  E-value=0.0025  Score=50.50  Aligned_cols=95  Identities=17%  Similarity=0.064  Sum_probs=63.1

Q ss_pred             CCCCeEEEEcCcccHhHHHHHhh---CCeEEEEcCCHHHHHHHhcCCCceEEeCC--C---CchhhhhhccCCCCceeeE
Q 037961           32 PKRNLAWDVGTRSGQAAASLAQI---YQHVIATDTSPKQLKFAIKLPNIRYQLTP--T---MSITELEQNVATQSSVDLV  103 (262)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~~~~~~~~--~---~~~~~~~~~~~~~~~~D~V  103 (262)
                      .++.+|||+||.+|.+++...++   ..-|.|||+-.-     ...+++..+.+.  .   ....-.+.  +++-.+|+|
T Consensus        68 ~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~-----~p~~Ga~~i~~~dvtdp~~~~ki~e~--lp~r~VdvV  140 (232)
T KOG4589|consen   68 RPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHI-----EPPEGATIIQGNDVTDPETYRKIFEA--LPNRPVDVV  140 (232)
T ss_pred             CCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeec-----cCCCCcccccccccCCHHHHHHHHHh--CCCCcccEE
Confidence            58899999999999999988775   246899998432     223566666652  1   00011222  378899999


Q ss_pred             EEccccc-----cCChhHHHHHH-------HHhhcCCCeEEEE
Q 037961          104 TIASALH-----WFDLPQFYKQV-------KWVLKKPSGVIAA  134 (262)
Q Consensus       104 ~~~~~~~-----~~d~~~~l~~~-------~r~Lk~pgG~l~i  134 (262)
                      ++..+-.     -.|....++-|       ...++ |+|.+++
T Consensus       141 lSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~-p~g~fvc  182 (232)
T KOG4589|consen  141 LSDMAPNATGVRIRDHYRSIELCDSALLFALTLLI-PNGSFVC  182 (232)
T ss_pred             EeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcC-CCcEEEE
Confidence            9864432     23555555555       44578 9999998

>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D

Probab=97.34  E-value=0.00011  Score=53.18  Aligned_cols=92  Identities=20%  Similarity=0.204  Sum_probs=39.5

Q ss_pred             EEEcCcccHhHHHHHhh---C--CeEEEEcCCHH---HHHHHhc---CCCceEEeCCCCchhhhhhccCCCCceeeEEEc
Q 037961           38 WDVGTRSGQAAASLAQI---Y--QHVIATDTSPK---QLKFAIK---LPNIRYQLTPTMSITELEQNVATQSSVDLVTIA  106 (262)
Q Consensus        38 lDvGcG~G~~~~~l~~~---~--~~v~~vD~s~~---~~~~a~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~  106 (262)
                      ||+|+..|..+..+++.   .  .+++++|+.+.   .-+..++   ..+++++.++..  ..+..++  .+++|+|+..
T Consensus         1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~--~~l~~~~--~~~~dli~iD   76 (106)
T PF13578_consen    1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSP--DFLPSLP--DGPIDLIFID   76 (106)
T ss_dssp             --------------------------EEEESS------------GGG-BTEEEEES-TH--HHHHHHH--H--EEEEEEE
T ss_pred             CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcH--HHHHHcC--CCCEEEEEEC
Confidence            68999999999888763   2  37999999993   3333332   256888887720  1223332  5789999976


Q ss_pred             cccccCChhHHHHHHHHhhcCCCeEEEE
Q 037961          107 SALHWFDLPQFYKQVKWVLKKPSGVIAA  134 (262)
Q Consensus       107 ~~~~~~d~~~~l~~~~r~Lk~pgG~l~i  134 (262)
                      ..-.+-.....++.+.+.|+ |||++++
T Consensus        77 g~H~~~~~~~dl~~~~~~l~-~ggviv~  103 (106)
T PF13578_consen   77 GDHSYEAVLRDLENALPRLA-PGGVIVF  103 (106)
T ss_dssp             S---HHHHHHHHHHHGGGEE-EEEEEEE
T ss_pred             CCCCHHHHHHHHHHHHHHcC-CCeEEEE
Confidence            53222245567888999999 9998876

>TIGR01444 fkbM_fam methyltransferase, FkbM family

Probab=97.32  E-value=0.00034  Score=53.40  Aligned_cols=38  Identities=24%  Similarity=0.316  Sum_probs=34.0

Q ss_pred             eEEEEcCcccHhHHHHHhhCC--eEEEEcCCHHHHHHHhc
Q 037961           36 LAWDVGTRSGQAAASLAQIYQ--HVIATDTSPKQLKFAIK   73 (262)
Q Consensus        36 ~vlDvGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~   73 (262)
                      +++|+|||.|..+..++..+.  +++++|+++.+.+.+++
T Consensus         1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~   40 (143)
T TIGR01444         1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEE   40 (143)
T ss_pred             CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHH
Confidence            479999999999999988765  69999999999998875

Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.

>PF13679 Methyltransf_32: Methyltransferase domain

Probab=97.32  E-value=0.00074  Score=51.72  Aligned_cols=42  Identities=21%  Similarity=0.224  Sum_probs=37.2

Q ss_pred             CCCCeEEEEcCcccHhHHHHHh------hCCeEEEEcCCHHHHHHHhc
Q 037961           32 PKRNLAWDVGTRSGQAAASLAQ------IYQHVIATDTSPKQLKFAIK   73 (262)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~------~~~~v~~vD~s~~~~~~a~~   73 (262)
                      .+...|+|+|||.|.+++.|+.      ...+|+++|.++..++.+.+
T Consensus        24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~   71 (141)
T PF13679_consen   24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQK   71 (141)
T ss_pred             CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHH
Confidence            4678899999999999999988      36799999999999988875

>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2

Probab=97.20  E-value=0.0028  Score=53.87  Aligned_cols=94  Identities=13%  Similarity=0.114  Sum_probs=57.0

Q ss_pred             CCeEEEEcCcccHhHHH-HHhh---CCeEEEEcCCHHHHHHHhcC--------CCceEEeCCCCchhhhhhccCCCCcee
Q 037961           34 RNLAWDVGTRSGQAAAS-LAQI---YQHVIATDTSPKQLKFAIKL--------PNIRYQLTPTMSITELEQNVATQSSVD  101 (262)
Q Consensus        34 ~~~vlDvGcG~G~~~~~-l~~~---~~~v~~vD~s~~~~~~a~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~D  101 (262)
                      ..+|+=||||+=-+|.. +++.   +..|+++|+++..++.+++.        .++.+..+|      +.+....-..||
T Consensus       121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d------~~~~~~dl~~~D  194 (276)
T PF03059_consen  121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITAD------VLDVTYDLKEYD  194 (276)
T ss_dssp             --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-------GGGG-GG----S
T ss_pred             cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecc------hhccccccccCC
Confidence            46899999998766654 4433   46799999999999998752        467777765      333332346799


Q ss_pred             eEEEccccccC--ChhHHHHHHHHhhcCCCeEEEE
Q 037961          102 LVTIASALHWF--DLPQFYKQVKWVLKKPSGVIAA  134 (262)
Q Consensus       102 ~V~~~~~~~~~--d~~~~l~~~~r~Lk~pgG~l~i  134 (262)
                      +|+.+.....-  +..+++..+.+.++ ||..+++
T Consensus       195 vV~lAalVg~~~e~K~~Il~~l~~~m~-~ga~l~~  228 (276)
T PF03059_consen  195 VVFLAALVGMDAEPKEEILEHLAKHMA-PGARLVV  228 (276)
T ss_dssp             EEEE-TT-S----SHHHHHHHHHHHS--TTSEEEE
T ss_pred             EEEEhhhcccccchHHHHHHHHHhhCC-CCcEEEE
Confidence            99866555433  67779999999999 9998887

5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=97.10  E-value=0.0066  Score=53.78  Aligned_cols=100  Identities=24%  Similarity=0.222  Sum_probs=70.0

Q ss_pred             CCCeEEEEcCcc-cHhHHHHHhh-C-CeEEEEcCCHHHHHHHhcCCCceEEeCC-CCchhhhhhccCCCC-ceeeEEEcc
Q 037961           33 KRNLAWDVGTRS-GQAAASLAQI-Y-QHVIATDTSPKQLKFAIKLPNIRYQLTP-TMSITELEQNVATQS-SVDLVTIAS  107 (262)
Q Consensus        33 ~~~~vlDvGcG~-G~~~~~l~~~-~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~D~V~~~~  107 (262)
                      ++.+|+=+|||+ |.++..+++. | .+|+++|.++.-++.|++.-........ .... ...-.....+ .+|+|+-..
T Consensus       168 ~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~-~~~~~~~t~g~g~D~vie~~  246 (350)
T COG1063         168 PGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDA-GAEILELTGGRGADVVIEAV  246 (350)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCccccH-HHHHHHHhCCCCCCEEEECC
Confidence            444899999998 9888888876 4 5899999999999999985444443332 1000 0001112233 699999655


Q ss_pred             ccccCChhHHHHHHHHhhcCCCeEEEEEecCC
Q 037961          108 ALHWFDLPQFYKQVKWVLKKPSGVIAAWTYTM  139 (262)
Q Consensus       108 ~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~~~  139 (262)
                      .     ...++..+.++++ |||++++.....
T Consensus       247 G-----~~~~~~~ai~~~r-~gG~v~~vGv~~  272 (350)
T COG1063         247 G-----SPPALDQALEALR-PGGTVVVVGVYG  272 (350)
T ss_pred             C-----CHHHHHHHHHHhc-CCCEEEEEeccC
Confidence            5     3558999999999 999999866653

>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]

Probab=97.10  E-value=0.0039  Score=55.05  Aligned_cols=84  Identities=14%  Similarity=0.062  Sum_probs=58.9

Q ss_pred             HHHHHHHHhhC--CCCCeEEEEcCcccHhHHHHHhhCC-----------------------------------------e
Q 037961           21 KELFKLIASKT--PKRNLAWDVGTRSGQAAASLAQIYQ-----------------------------------------H   57 (262)
Q Consensus        21 ~~~~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~~-----------------------------------------~   57 (262)
                      +.+...|+...  .++..++|-=||+|++....+-.+.                                         .
T Consensus       177 etLAaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~  256 (381)
T COG0116         177 ETLAAAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPI  256 (381)
T ss_pred             HHHHHHHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccce
Confidence            34444444333  3456889999999999887765432                                         3


Q ss_pred             EEEEcCCHHHHHHHhcC-------CCceEEeCCCCchhhhhhccCCCCceeeEEEccccc
Q 037961           58 VIATDTSPKQLKFAIKL-------PNIRYQLTPTMSITELEQNVATQSSVDLVTIASALH  110 (262)
Q Consensus        58 v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~~  110 (262)
                      ++|+|+++.|++.|+.+       ..|+|.+++      +..+.-+-..+|+|+||...-
T Consensus       257 ~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d------~~~l~~~~~~~gvvI~NPPYG  310 (381)
T COG0116         257 IYGSDIDPRHIEGAKANARAAGVGDLIEFKQAD------ATDLKEPLEEYGVVISNPPYG  310 (381)
T ss_pred             EEEecCCHHHHHHHHHHHHhcCCCceEEEEEcc------hhhCCCCCCcCCEEEeCCCcc
Confidence            77999999999999864       457777765      444442336899999987654

>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]

Probab=96.97  E-value=0.0067  Score=50.89  Aligned_cols=95  Identities=15%  Similarity=0.188  Sum_probs=66.7

Q ss_pred             CCCCCeEEEEcCcccHhHHHHHhhC---CeEEEEcCCHHHHHHHhcC-------CCceEEeCCCCchhhhhhccCCCCce
Q 037961           31 TPKRNLAWDVGTRSGQAAASLAQIY---QHVIATDTSPKQLKFAIKL-------PNIRYQLTPTMSITELEQNVATQSSV  100 (262)
Q Consensus        31 ~~~~~~vlDvGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (262)
                      +.++.+|+|-|.|+|.++..+++.-   .+++..|....-.+.|++.       .++.+...|..    -...+..+..+
T Consensus       103 i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc----~~GF~~ks~~a  178 (314)
T KOG2915|consen  103 IRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVC----GSGFLIKSLKA  178 (314)
T ss_pred             CCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecc----cCCcccccccc
Confidence            3689999999999999999998863   5899999998888888751       56676665510    01112236778


Q ss_pred             eeEEEccccccCChhHHHHHHHHhhcCCCe-EEEE
Q 037961          101 DLVTIASALHWFDLPQFYKQVKWVLKKPSG-VIAA  134 (262)
Q Consensus       101 D~V~~~~~~~~~d~~~~l~~~~r~Lk~pgG-~l~i  134 (262)
                      |.|+-...-.|    .++-.++.+|| .+| +|+.
T Consensus       179 DaVFLDlPaPw----~AiPha~~~lk-~~g~r~cs  208 (314)
T KOG2915|consen  179 DAVFLDLPAPW----EAIPHAAKILK-DEGGRLCS  208 (314)
T ss_pred             ceEEEcCCChh----hhhhhhHHHhh-hcCceEEe
Confidence            99986655444    45666677888 555 5544

>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases

Probab=96.96  E-value=0.0018  Score=53.16  Aligned_cols=59  Identities=17%  Similarity=0.205  Sum_probs=45.7

Q ss_pred             hCCCChHHHHHHHHhhC-CCCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhc
Q 037961           15 ARPNYPKELFKLIASKT-PKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIK   73 (262)
Q Consensus        15 ~rp~yp~~~~~~l~~~~-~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~   73 (262)
                      |-...|.++++.+.... .++..|||--||+|+.+......+.+.+|+|+++..++.|++
T Consensus       172 h~~~kP~~l~~~lI~~~t~~gdiVlDpF~GSGTT~~aa~~l~R~~ig~E~~~~y~~~a~~  231 (231)
T PF01555_consen  172 HPTQKPVELIERLIKASTNPGDIVLDPFAGSGTTAVAAEELGRRYIGIEIDEEYCEIAKK  231 (231)
T ss_dssp             -TT-S-HHHHHHHHHHHS-TT-EEEETT-TTTHHHHHHHHTT-EEEEEESSHHHHHHHHH
T ss_pred             eeecCCHHHHHHHHHhhhccceeeehhhhccChHHHHHHHcCCeEEEEeCCHHHHHHhcC
Confidence            34466888888877654 689999999999999999999999999999999999998863

In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....

>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes

Probab=96.90  E-value=0.0021  Score=55.19  Aligned_cols=77  Identities=18%  Similarity=0.135  Sum_probs=40.0

Q ss_pred             CCeEEEEcCcccH-hHHHHH-hhCCeEEEEcCCHHHHHHHhcC--------CCceEEeCC-CCchhhhhhccCCCCceee
Q 037961           34 RNLAWDVGTRSGQ-AAASLA-QIYQHVIATDTSPKQLKFAIKL--------PNIRYQLTP-TMSITELEQNVATQSSVDL  102 (262)
Q Consensus        34 ~~~vlDvGcG~G~-~~~~l~-~~~~~v~~vD~s~~~~~~a~~~--------~~~~~~~~~-~~~~~~~~~~~~~~~~~D~  102 (262)
                      .-++||||+|... +.+.-+ .++.+++|+|+++..++.|++.        ..|+++... .-.+  +..+..++..||+
T Consensus       103 ~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i--~~~i~~~~e~~df  180 (299)
T PF05971_consen  103 KVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNI--FDGIIQPNERFDF  180 (299)
T ss_dssp             --EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SS--TTTSTT--S-EEE
T ss_pred             ceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCcccc--chhhhcccceeeE
Confidence            4578999999863 333333 3589999999999999999852        346665443 1000  1122224568999


Q ss_pred             EEEccccccC
Q 037961          103 VTIASALHWF  112 (262)
Q Consensus       103 V~~~~~~~~~  112 (262)
                      ++|+..||-.
T Consensus       181 tmCNPPFy~s  190 (299)
T PF05971_consen  181 TMCNPPFYSS  190 (299)
T ss_dssp             EEE-----SS
T ss_pred             EecCCccccC
Confidence            9999999866

The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.

>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

Probab=96.83  E-value=0.016  Score=51.86  Aligned_cols=103  Identities=17%  Similarity=0.155  Sum_probs=69.8

Q ss_pred             CCCCeEEEEcCcc-cHhHHHHHhh-CC-eEEEEcCCHHHHHHHhcCCCceEEeCCCCc-h-hhhhhccCCCCceeeEEEc
Q 037961           32 PKRNLAWDVGTRS-GQAAASLAQI-YQ-HVIATDTSPKQLKFAIKLPNIRYQLTPTMS-I-TELEQNVATQSSVDLVTIA  106 (262)
Q Consensus        32 ~~~~~vlDvGcG~-G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~D~V~~~  106 (262)
                      .++.+||.+|||+ |..+..+++. +. +++++|.++++++.+++.....++...... . ..+..+ .....+|+|+-.
T Consensus       183 ~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~l~~~-~~~~~~D~vld~  261 (386)
T cd08283         183 KPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHLGAETINFEEVDDVVEALREL-TGGRGPDVCIDA  261 (386)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCcEEEcCCcchHHHHHHHHH-cCCCCCCEEEEC
Confidence            4678899999998 8888888875 65 599999999999999876344443322110 0 111122 133469999864


Q ss_pred             cccc---------------cC-ChhHHHHHHHHhhcCCCeEEEEEe
Q 037961          107 SALH---------------WF-DLPQFYKQVKWVLKKPSGVIAAWT  136 (262)
Q Consensus       107 ~~~~---------------~~-d~~~~l~~~~r~Lk~pgG~l~i~~  136 (262)
                      ..-+               -. |....+.++.+.|+ ++|+++++.
T Consensus       262 vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~G~iv~~g  306 (386)
T cd08283         262 VGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVR-KGGTVSIIG  306 (386)
T ss_pred             CCCcccccccccccccccccccCchHHHHHHHHHhc-cCCEEEEEc
Confidence            3211               11 45668899999999 999998864

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=96.80  E-value=0.011  Score=51.63  Aligned_cols=96  Identities=20%  Similarity=0.162  Sum_probs=69.4

Q ss_pred             CCCCCeEEEEcCc-ccHhHHHHHh-hCCeEEEEcCCHHHHHHHhcCCCceEEeCCCCchhhhhhccCCCCceeeEEEccc
Q 037961           31 TPKRNLAWDVGTR-SGQAAASLAQ-IYQHVIATDTSPKQLKFAIKLPNIRYQLTPTMSITELEQNVATQSSVDLVTIASA  108 (262)
Q Consensus        31 ~~~~~~vlDvGcG-~G~~~~~l~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~  108 (262)
                      .+++..|+=+|+| .|..+.++++ .+++|+++|.|++-++.|+++-.-.++....  ....+..   .+.||+|+..- 
T Consensus       164 ~~pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGAd~~i~~~~--~~~~~~~---~~~~d~ii~tv-  237 (339)
T COG1064         164 VKPGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGADHVINSSD--SDALEAV---KEIADAIIDTV-  237 (339)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCCcEEEEcCC--chhhHHh---HhhCcEEEECC-
Confidence            4578888888887 3667778887 5999999999999999999875444444320  0112222   12399998643 


Q ss_pred             cccCChhHHHHHHHHhhcCCCeEEEEEecC
Q 037961          109 LHWFDLPQFYKQVKWVLKKPSGVIAAWTYT  138 (262)
Q Consensus       109 ~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~~  138 (262)
                          . ...+....+.|+ +||++++....
T Consensus       238 ----~-~~~~~~~l~~l~-~~G~~v~vG~~  261 (339)
T COG1064         238 ----G-PATLEPSLKALR-RGGTLVLVGLP  261 (339)
T ss_pred             ----C-hhhHHHHHHHHh-cCCEEEEECCC
Confidence                3 678889999999 99999996655

>TIGR00006 S-adenosyl-methyltransferase MraW

Probab=96.76  E-value=0.011  Score=51.09  Aligned_cols=90  Identities=10%  Similarity=0.109  Sum_probs=63.9

Q ss_pred             hCCCChHHHHHHHHhhCCCCCeEEEEcCcccHhHHHHHhh--CCeEEEEcCCHHHHHHHhcC-----CCceEEeCCCCch
Q 037961           15 ARPNYPKELFKLIASKTPKRNLAWDVGTRSGQAAASLAQI--YQHVIATDTSPKQLKFAIKL-----PNIRYQLTPTMSI   87 (262)
Q Consensus        15 ~rp~yp~~~~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~-----~~~~~~~~~~~~~   87 (262)
                      |-|...+++++.+.  ..++..++|.-||.|..|..++..  ..+|+|+|.++.+++.+++.     .++.++.++   +
T Consensus         4 H~pVll~Evl~~L~--~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~~R~~~i~~n---F   78 (305)
T TIGR00006         4 HQSVLLDEVVEGLN--IKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFEGRVVLIHDN---F   78 (305)
T ss_pred             CcchhHHHHHHhcC--cCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcCCcEEEEeCC---H
Confidence            45666666666653  246678999999999999999876  37899999999999998753     367777766   1


Q ss_pred             hhhhh-cc-CCCCceeeEEEcccc
Q 037961           88 TELEQ-NV-ATQSSVDLVTIASAL  109 (262)
Q Consensus        88 ~~~~~-~~-~~~~~~D~V~~~~~~  109 (262)
                      .++.. +. ....++|.|+...++
T Consensus        79 ~~l~~~l~~~~~~~vDgIl~DLGv  102 (305)
T TIGR00006        79 ANFFEHLDELLVTKIDGILVDLGV  102 (305)
T ss_pred             HHHHHHHHhcCCCcccEEEEeccC
Confidence            12211 11 133579999986655

Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.

>KOG3201 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.76  E-value=0.0015  Score=50.43  Aligned_cols=107  Identities=18%  Similarity=0.191  Sum_probs=70.7

Q ss_pred             CCCeEEEEcCc-ccHhHHHHHhh--CCeEEEEcCCHHHHHHHhcC--CC----ceEEeCCCCchhhhhhccCCCCceeeE
Q 037961           33 KRNLAWDVGTR-SGQAAASLAQI--YQHVIATDTSPKQLKFAIKL--PN----IRYQLTPTMSITELEQNVATQSSVDLV  103 (262)
Q Consensus        33 ~~~~vlDvGcG-~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~--~~----~~~~~~~~~~~~~~~~~~~~~~~~D~V  103 (262)
                      .+..|||+|.| +|..+..++-.  ...|..+|-++..++..++.  .|    .+-...-.+....+.. ..+...||.|
T Consensus        29 rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqs-q~eq~tFDiI  107 (201)
T KOG3201|consen   29 RGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQS-QQEQHTFDII  107 (201)
T ss_pred             hHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHH-HHhhCcccEE
Confidence            45778999999 57777777654  56899999999998877652  11    1111000111111111 1245689999


Q ss_pred             EEccccccC-ChhHHHHHHHHhhcCCCeEEEEEecCCCc
Q 037961          104 TIASALHWF-DLPQFYKQVKWVLKKPSGVIAAWTYTMPE  141 (262)
Q Consensus       104 ~~~~~~~~~-d~~~~l~~~~r~Lk~pgG~l~i~~~~~~~  141 (262)
                      +|+-++..- -.+.+..-+.++|+ |.|.-.++......
T Consensus       108 laADClFfdE~h~sLvdtIk~lL~-p~g~Al~fsPRRg~  145 (201)
T KOG3201|consen  108 LAADCLFFDEHHESLVDTIKSLLR-PSGRALLFSPRRGQ  145 (201)
T ss_pred             EeccchhHHHHHHHHHHHHHHHhC-cccceeEecCcccc
Confidence            999998766 45668889999999 99997776665543

>PRK11524 putative methyltransferase; Provisional

Probab=96.75  E-value=0.0041  Score=53.42  Aligned_cols=57  Identities=16%  Similarity=0.166  Sum_probs=50.3

Q ss_pred             CChHHHHHHHHhhC-CCCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhcC
Q 037961           18 NYPKELFKLIASKT-PKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKL   74 (262)
Q Consensus        18 ~yp~~~~~~l~~~~-~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~   74 (262)
                      ..|.++++.+.... .++.+|||--||+|+.+....+.+.+.+|+|++++.++.|+++
T Consensus       192 ~kP~~L~erlI~~~S~~GD~VLDPF~GSGTT~~AA~~lgR~~IG~Ei~~~Y~~~a~~R  249 (284)
T PRK11524        192 QKPEALLKRIILASSNPGDIVLDPFAGSFTTGAVAKASGRKFIGIEINSEYIKMGLRR  249 (284)
T ss_pred             cChHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHcCCCEEEEeCCHHHHHHHHHH
Confidence            45788888877665 6899999999999999999999999999999999999988864

>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.73  E-value=0.0024  Score=52.13  Aligned_cols=116  Identities=20%  Similarity=0.195  Sum_probs=76.2

Q ss_pred             CCCeEEEEcCcccHhHHHHHhh--------CC---eEEEEcCCHHHHHHHhcCCCceEEeCCCCchhhhhhc--cCCCCc
Q 037961           33 KRNLAWDVGTRSGQAAASLAQI--------YQ---HVIATDTSPKQLKFAIKLPNIRYQLTPTMSITELEQN--VATQSS   99 (262)
Q Consensus        33 ~~~~vlDvGcG~G~~~~~l~~~--------~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~--~~~~~~   99 (262)
                      .-.+++|+.+.+|++++.|.++        +.   .|++||+-+-     .-.+++.-+++|.-....++.+  .+...+
T Consensus        41 gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~M-----aPI~GV~qlq~DIT~~stae~Ii~hfggek  115 (294)
T KOG1099|consen   41 GVKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPM-----APIEGVIQLQGDITSASTAEAIIEHFGGEK  115 (294)
T ss_pred             hhhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccC-----CccCceEEeecccCCHhHHHHHHHHhCCCC
Confidence            4567899999999999998864        12   2999999632     2346777787772222334442  256778


Q ss_pred             eeeEEEc-----cccccCC-------hhHHHHHHHHhhcCCCeEEEE--EecCCC-cccHHHHHhhcccc
Q 037961          100 VDLVTIA-----SALHWFD-------LPQFYKQVKWVLKKPSGVIAA--WTYTMP-EINESVGAVFKPFD  154 (262)
Q Consensus       100 ~D~V~~~-----~~~~~~d-------~~~~l~~~~r~Lk~pgG~l~i--~~~~~~-~~~~~~~~~~~~~~  154 (262)
                      .|+|+|.     ..+|-+|       ...++.-...+|| |||.|+.  +--.+. .+..+++..|..+.
T Consensus       116 AdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk-~Gg~FVaKifRg~~tslLysql~~ff~kv~  184 (294)
T KOG1099|consen  116 ADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLK-PGGSFVAKIFRGRDTSLLYSQLRKFFKKVT  184 (294)
T ss_pred             ccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheec-CCCeeehhhhccCchHHHHHHHHHHhhcee
Confidence            9999995     4567664       2236777889999 9999996  322222 22455666665543

>PRK10742 putative methyltransferase; Provisional

Probab=96.72  E-value=0.016  Score=48.35  Aligned_cols=86  Identities=13%  Similarity=0.067  Sum_probs=59.8

Q ss_pred             eEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhc---C------------CCceEEeCCCCchhhhhhccCCCCce
Q 037961           36 LAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIK---L------------PNIRYQLTPTMSITELEQNVATQSSV  100 (262)
Q Consensus        36 ~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~---~------------~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (262)
                      +|||+-+|+|.-+..++.+|++|+++|-++.+....+.   .            .+++.+.++.     .+.+.-...+|
T Consensus        91 ~VLD~TAGlG~Da~~las~G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da-----~~~L~~~~~~f  165 (250)
T PRK10742         91 DVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASS-----LTALTDITPRP  165 (250)
T ss_pred             EEEECCCCccHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcH-----HHHHhhCCCCC
Confidence            89999999999999999999999999999998876553   1            1344555541     11121123379


Q ss_pred             eeEEEccccccCChhHHHHHHHHhhc
Q 037961          101 DLVTIASALHWFDLPQFYKQVKWVLK  126 (262)
Q Consensus       101 D~V~~~~~~~~~d~~~~l~~~~r~Lk  126 (262)
                      |+|+....+.+-.......+-.|+++
T Consensus       166 DVVYlDPMfp~~~ksa~vkk~mr~~~  191 (250)
T PRK10742        166 QVVYLDPMFPHKQKSALVKKEMRVFQ  191 (250)
T ss_pred             cEEEECCCCCCCccccchhhhHHHHH
Confidence            99999888877554444444445554

>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A

Probab=96.60  E-value=0.0055  Score=50.98  Aligned_cols=99  Identities=15%  Similarity=0.165  Sum_probs=65.6

Q ss_pred             HHHHHHHHhhCCCCCeEEEEcCcccHhHHHHHhh--CCeEEEEcCCHHHHHHHhcC-----CCceEEeCCCCchhhhhhc
Q 037961           21 KELFKLIASKTPKRNLAWDVGTRSGQAAASLAQI--YQHVIATDTSPKQLKFAIKL-----PNIRYQLTPTMSITELEQN   93 (262)
Q Consensus        21 ~~~~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~-----~~~~~~~~~~~~~~~~~~~   93 (262)
                      +.+++.+....++..+|+|||||.=-++..+...  +..++|+|++..+++.....     ........|      ...-
T Consensus        93 d~fY~~if~~~~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~~~~~v~D------l~~~  166 (251)
T PF07091_consen   93 DEFYDEIFGRIPPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVPHDARVRD------LLSD  166 (251)
T ss_dssp             HHHHHHHCCCS---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-CEEEEEE-------TTTS
T ss_pred             HHHHHHHHhcCCCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCCcceeEee------eecc
Confidence            6777888777788899999999999999988765  56999999999999987752     344454444      1111


Q ss_pred             cCCCCceeeEEEccccccCChhH--HHHHHHHhhc
Q 037961           94 VATQSSVDLVTIASALHWFDLPQ--FYKQVKWVLK  126 (262)
Q Consensus        94 ~~~~~~~D~V~~~~~~~~~d~~~--~l~~~~r~Lk  126 (262)
                       .+....|+.+..=.+|-++.++  .--++...++
T Consensus       167 -~~~~~~DlaLllK~lp~le~q~~g~g~~ll~~~~  200 (251)
T PF07091_consen  167 -PPKEPADLALLLKTLPCLERQRRGAGLELLDALR  200 (251)
T ss_dssp             -HTTSEESEEEEET-HHHHHHHSTTHHHHHHHHSC
T ss_pred             -CCCCCcchhhHHHHHHHHHHHhcchHHHHHHHhC
Confidence             2567799999988888774443  3234444444

>COG4798 Predicted methyltransferase [General function prediction only]

Probab=96.58  E-value=0.0093  Score=47.61  Aligned_cols=100  Identities=19%  Similarity=0.070  Sum_probs=60.9

Q ss_pred             CCCCCeEEEEcCcccHhHHHHHhh-CC--eEEEEcCCHH----------HHHHHhc--CCCceEEeCCCCchhhhhhccC
Q 037961           31 TPKRNLAWDVGTRSGQAAASLAQI-YQ--HVIATDTSPK----------QLKFAIK--LPNIRYQLTPTMSITELEQNVA   95 (262)
Q Consensus        31 ~~~~~~vlDvGcG~G~~~~~l~~~-~~--~v~~vD~s~~----------~~~~a~~--~~~~~~~~~~~~~~~~~~~~~~   95 (262)
                      ++++.+|+|+=.|.|.+|+.++.. +.  .|++.-+.+.          +-..+++  ..|++.+..+      .-.++ 
T Consensus        46 lkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~------~~A~~-  118 (238)
T COG4798          46 LKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKP------LVALG-  118 (238)
T ss_pred             cCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCc------ccccC-
Confidence            368899999999999999999875 22  4555444322          2222222  2344444332      11122 


Q ss_pred             CCCceeeEEEccc--------cccCChhHHHHHHHHhhcCCCeEEEEEecC
Q 037961           96 TQSSVDLVTIASA--------LHWFDLPQFYKQVKWVLKKPSGVIAAWTYT  138 (262)
Q Consensus        96 ~~~~~D~V~~~~~--------~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~~  138 (262)
                      +.+..|++..++.        +|--...++..++++.|| |||++++-.+.
T Consensus       119 ~pq~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LK-PGGv~~V~dH~  168 (238)
T COG4798         119 APQKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALK-PGGVYLVEDHR  168 (238)
T ss_pred             CCCcccccccchhhhhhhccccCcchHHHHHHHHHHhcC-CCcEEEEEecc
Confidence            3344555554443        332245668999999999 99999986554

>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []

Probab=96.57  E-value=0.022  Score=46.24  Aligned_cols=115  Identities=17%  Similarity=0.213  Sum_probs=62.1

Q ss_pred             CChHHH--HHHHHhhCCCCCeEEEEcCcccHhHHHHHh---h---CCeEEEEcCCHHHHH-HHhcC----CCceEEeCCC
Q 037961           18 NYPKEL--FKLIASKTPKRNLAWDVGTRSGQAAASLAQ---I---YQHVIATDTSPKQLK-FAIKL----PNIRYQLTPT   84 (262)
Q Consensus        18 ~yp~~~--~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~---~---~~~v~~vD~s~~~~~-~a~~~----~~~~~~~~~~   84 (262)
                      .+|..+  +..|+... ++.+|+|+|.-.|..+..+|.   .   ..+|+|+|++..... .+.+.    ++|++++++.
T Consensus        16 q~P~Dm~~~qeli~~~-kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~~~rI~~i~Gds   94 (206)
T PF04989_consen   16 QYPQDMVAYQELIWEL-KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPMSPRITFIQGDS   94 (206)
T ss_dssp             S-HHHHHHHHHHHHHH---SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----TTEEEEES-S
T ss_pred             cCHHHHHHHHHHHHHh-CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccccCceEEEECCC
Confidence            356554  33344443 446789999999998887765   2   369999999655443 33333    7999999993


Q ss_pred             CchhhhhhccCC--CCceeeEEEccccccCChhHHHHHHHHhhcCCCeEEEE
Q 037961           85 MSITELEQNVAT--QSSVDLVTIASALHWFDLPQFYKQVKWVLKKPSGVIAA  134 (262)
Q Consensus        85 ~~~~~~~~~~~~--~~~~D~V~~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i  134 (262)
                      ...+.+......  .....+|+-...-.+.+..+.++....+++ +|+.+++
T Consensus        95 ~d~~~~~~v~~~~~~~~~vlVilDs~H~~~hvl~eL~~y~plv~-~G~Y~IV  145 (206)
T PF04989_consen   95 IDPEIVDQVRELASPPHPVLVILDSSHTHEHVLAELEAYAPLVS-PGSYLIV  145 (206)
T ss_dssp             SSTHHHHTSGSS----SSEEEEESS----SSHHHHHHHHHHT---TT-EEEE
T ss_pred             CCHHHHHHHHHhhccCCceEEEECCCccHHHHHHHHHHhCccCC-CCCEEEE
Confidence            333333333211  233345543333223377788888999999 9999998

Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.

>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1

Probab=96.56  E-value=0.018  Score=42.94  Aligned_cols=90  Identities=22%  Similarity=0.163  Sum_probs=63.6

Q ss_pred             cccHhHHHHHhh-CCeEEEEcCCHHHHHHHhcCCCceEEeCCCC-chhhhhhccCCCCceeeEEEccccccCChhHHHHH
Q 037961           43 RSGQAAASLAQI-YQHVIATDTSPKQLKFAIKLPNIRYQLTPTM-SITELEQNVATQSSVDLVTIASALHWFDLPQFYKQ  120 (262)
Q Consensus        43 G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~D~V~~~~~~~~~d~~~~l~~  120 (262)
                      |.|..+..+++. |.+|+++|.++.-++.+++..--.+...+.. ..+.+..+. ....+|+|+-...     -...++.
T Consensus         1 ~vG~~a~q~ak~~G~~vi~~~~~~~k~~~~~~~Ga~~~~~~~~~~~~~~i~~~~-~~~~~d~vid~~g-----~~~~~~~   74 (130)
T PF00107_consen    1 GVGLMAIQLAKAMGAKVIATDRSEEKLELAKELGADHVIDYSDDDFVEQIRELT-GGRGVDVVIDCVG-----SGDTLQE   74 (130)
T ss_dssp             HHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTESEEEETTTSSHHHHHHHHT-TTSSEEEEEESSS-----SHHHHHH
T ss_pred             ChHHHHHHHHHHcCCEEEEEECCHHHHHHHHhhccccccccccccccccccccc-ccccceEEEEecC-----cHHHHHH
Confidence            468888888875 8999999999999999998743333333321 112233321 3357999985433     3679999


Q ss_pred             HHHhhcCCCeEEEEEecCC
Q 037961          121 VKWVLKKPSGVIAAWTYTM  139 (262)
Q Consensus       121 ~~r~Lk~pgG~l~i~~~~~  139 (262)
                      +..+|+ +||++++.....
T Consensus        75 ~~~~l~-~~G~~v~vg~~~   92 (130)
T PF00107_consen   75 AIKLLR-PGGRIVVVGVYG   92 (130)
T ss_dssp             HHHHEE-EEEEEEEESSTS
T ss_pred             HHHHhc-cCCEEEEEEccC
Confidence            999999 999999977554

1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....

>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins

Probab=96.56  E-value=0.0066  Score=49.49  Aligned_cols=89  Identities=22%  Similarity=0.145  Sum_probs=54.3

Q ss_pred             EEEEcCcccHhHHHHHhhCC--eEEEEcCCHHHHHHHhcC-------CCceEEeCCCCchhhhhhccCCCCc-eeeEEEc
Q 037961           37 AWDVGTRSGQAAASLAQIYQ--HVIATDTSPKQLKFAIKL-------PNIRYQLTPTMSITELEQNVATQSS-VDLVTIA  106 (262)
Q Consensus        37 vlDvGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~-~D~V~~~  106 (262)
                      |.||||--|.+...|.+.+.  +++++|+++.-++.|++.       ..+.+..+|.     ++.+  +.+. .|.|+.+
T Consensus         1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdG-----L~~l--~~~e~~d~ivIA   73 (205)
T PF04816_consen    1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDG-----LEVL--KPGEDVDTIVIA   73 (205)
T ss_dssp             EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SG-----GGG----GGG---EEEEE
T ss_pred             CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCc-----cccc--CCCCCCCEEEEe
Confidence            68999999999999999875  799999999999999852       5688887762     2222  3333 7888754


Q ss_pred             cccccCChhHHHHHHHHhhcCCCeEEEE
Q 037961          107 SALHWFDLPQFYKQVKWVLKKPSGVIAA  134 (262)
Q Consensus       107 ~~~~~~d~~~~l~~~~r~Lk~pgG~l~i  134 (262)
                      .+= .--....+++....++ +...|++
T Consensus        74 GMG-G~lI~~ILe~~~~~~~-~~~~lIL   99 (205)
T PF04816_consen   74 GMG-GELIIEILEAGPEKLS-SAKRLIL   99 (205)
T ss_dssp             EE--HHHHHHHHHHTGGGGT-T--EEEE
T ss_pred             cCC-HHHHHHHHHhhHHHhc-cCCeEEE
Confidence            321 0012234444445555 4456666

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.

>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=96.54  E-value=0.0096  Score=51.74  Aligned_cols=106  Identities=17%  Similarity=0.177  Sum_probs=59.6

Q ss_pred             CCCeEEEEcCcccHhHHHHHhh---CCeEEEEcCCHHHHHHHhcC-CCceEEeCCCCchhhh--hhccCC-CCceeeEEE
Q 037961           33 KRNLAWDVGTRSGQAAASLAQI---YQHVIATDTSPKQLKFAIKL-PNIRYQLTPTMSITEL--EQNVAT-QSSVDLVTI  105 (262)
Q Consensus        33 ~~~~vlDvGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~-~~~~~~~~~~~~~~~~--~~~~~~-~~~~D~V~~  105 (262)
                      ...++||+|.|+|.....+-.-   ..+++-++.|+..-+..... .++.....+ +...++  +.++++ ...|++|+.
T Consensus       113 apqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td-~r~s~vt~dRl~lp~ad~ytl~i~  191 (484)
T COG5459         113 APQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTD-WRASDVTEDRLSLPAADLYTLAIV  191 (484)
T ss_pred             CcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCC-CCCCccchhccCCCccceeehhhh
Confidence            3456999999999776555432   45678888887765544321 122111111 000111  122222 334555554


Q ss_pred             ccccccCChhH----HHHHHHHhhcCCCeEEEEEecCCC
Q 037961          106 ASALHWFDLPQ----FYKQVKWVLKKPSGVIAAWTYTMP  140 (262)
Q Consensus       106 ~~~~~~~d~~~----~l~~~~r~Lk~pgG~l~i~~~~~~  140 (262)
                      ..-+-....++    .++.+..++. |||.|+|...+.+
T Consensus       192 ~~eLl~d~~ek~i~~~ie~lw~l~~-~gg~lVivErGtp  229 (484)
T COG5459         192 LDELLPDGNEKPIQVNIERLWNLLA-PGGHLVIVERGTP  229 (484)
T ss_pred             hhhhccccCcchHHHHHHHHHHhcc-CCCeEEEEeCCCc
Confidence            33332332222    7889999999 9999999877655

>PRK13699 putative methylase; Provisional

Probab=96.52  E-value=0.0085  Score=49.71  Aligned_cols=58  Identities=12%  Similarity=0.072  Sum_probs=50.3

Q ss_pred             CCChHHHHHHHHhh-CCCCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhcC
Q 037961           17 PNYPKELFKLIASK-TPKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKL   74 (262)
Q Consensus        17 p~yp~~~~~~l~~~-~~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~   74 (262)
                      ...|.++++.++.. ..++..|||--||+|+.+....+.+.+.+|+|+++...+.+.++
T Consensus       146 ~~kP~~l~~~~i~~~s~~g~~vlDpf~Gsgtt~~aa~~~~r~~~g~e~~~~y~~~~~~r  204 (227)
T PRK13699        146 TEKPVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLEQYHRAGQQR  204 (227)
T ss_pred             CCCcHHHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHcCCCEEEEecCHHHHHHHHHH
Confidence            35688888887764 46889999999999999999999999999999999999988753

>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins

Probab=96.50  E-value=0.011  Score=50.71  Aligned_cols=100  Identities=22%  Similarity=0.266  Sum_probs=69.8

Q ss_pred             CCCCeEEEEcCcccHhHHHHHhh---CCeEEEEcCCHHHHHHHhcC------CCceEEeCCCCchhhhhhc-c-CCCCce
Q 037961           32 PKRNLAWDVGTRSGQAAASLAQI---YQHVIATDTSPKQLKFAIKL------PNIRYQLTPTMSITELEQN-V-ATQSSV  100 (262)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~~~~~-~-~~~~~~  100 (262)
                      .++..|||+++++|.=|.++++.   -..+++.|+++.-+...+.+      .++.....|      +... + .....|
T Consensus        84 ~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D------~~~~~~~~~~~~f  157 (283)
T PF01189_consen   84 QPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINAD------ARKLDPKKPESKF  157 (283)
T ss_dssp             TTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESH------HHHHHHHHHTTTE
T ss_pred             cccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeec------ccccccccccccc
Confidence            47788999999999999998885   35899999999998877642      455555443      2222 1 123469


Q ss_pred             eeEEEccccc------------cC----C-------hhHHHHHHHHhh----cCCCeEEEEEecC
Q 037961          101 DLVTIASALH------------WF----D-------LPQFYKQVKWVL----KKPSGVIAAWTYT  138 (262)
Q Consensus       101 D~V~~~~~~~------------~~----d-------~~~~l~~~~r~L----k~pgG~l~i~~~~  138 (262)
                      |.|+..-..-            |.    +       ..+.+..+.+.+    | |||+++-.+++
T Consensus       158 d~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k-~gG~lvYsTCS  221 (283)
T PF01189_consen  158 DRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFK-PGGRLVYSTCS  221 (283)
T ss_dssp             EEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBE-EEEEEEEEESH
T ss_pred             chhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhccccc-CCCeEEEEecc
Confidence            9999732211            11    1       223678999999    9 99999986665

In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=96.50  E-value=0.033  Score=48.98  Aligned_cols=96  Identities=16%  Similarity=0.196  Sum_probs=64.3

Q ss_pred             CCCeEEEEcCcc-cHhHHHHHhh-CC-eEEEEcCCHHHHHHHhcCCCceEEeCCCCchhhhhhccCCCCceeeEEEcccc
Q 037961           33 KRNLAWDVGTRS-GQAAASLAQI-YQ-HVIATDTSPKQLKFAIKLPNIRYQLTPTMSITELEQNVATQSSVDLVTIASAL  109 (262)
Q Consensus        33 ~~~~vlDvGcG~-G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~  109 (262)
                      ++.+||=.|||. |..+.++++. |. +|+++|.+++-++.++++....++....   .++..+....+.+|+|+-... 
T Consensus       169 ~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~---~~~~~~~~~~g~~D~vid~~G-  244 (343)
T PRK09880        169 QGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGADKLVNPQN---DDLDHYKAEKGYFDVSFEVSG-  244 (343)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCCcEEecCCc---ccHHHHhccCCCCCEEEECCC-
Confidence            567888889875 7777777765 66 6999999999999998763222222211   112222112245899885433 


Q ss_pred             ccCChhHHHHHHHHhhcCCCeEEEEEec
Q 037961          110 HWFDLPQFYKQVKWVLKKPSGVIAAWTY  137 (262)
Q Consensus       110 ~~~d~~~~l~~~~r~Lk~pgG~l~i~~~  137 (262)
                          ....++.+.++|+ +||+++++..
T Consensus       245 ----~~~~~~~~~~~l~-~~G~iv~~G~  267 (343)
T PRK09880        245 ----HPSSINTCLEVTR-AKGVMVQVGM  267 (343)
T ss_pred             ----CHHHHHHHHHHhh-cCCEEEEEcc
Confidence                2357888999999 9999998664

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=96.46  E-value=0.026  Score=52.28  Aligned_cols=103  Identities=17%  Similarity=0.115  Sum_probs=69.0

Q ss_pred             CCCeEEEEcCcc-cHhHHHHHhh-CCeEEEEcCCHHHHHHHhcCCCceEEeCC--CC---ch-------hhh-hh--ccC
Q 037961           33 KRNLAWDVGTRS-GQAAASLAQI-YQHVIATDTSPKQLKFAIKLPNIRYQLTP--TM---SI-------TEL-EQ--NVA   95 (262)
Q Consensus        33 ~~~~vlDvGcG~-G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~--~~---~~-------~~~-~~--~~~   95 (262)
                      ++.+|+=+|||. |..+...++. |++|+++|.+++-++.+++. +..+..-+  +.   ..       .+. +.  -.+
T Consensus       164 pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aesl-GA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~~~  242 (509)
T PRK09424        164 PPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESM-GAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMALF  242 (509)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc-CCeEEEeccccccccccchhhhcchhHHHHHHHHH
Confidence            678999999997 8788777764 88999999999999999886 34432111  00   00       010 00  001


Q ss_pred             CC--CceeeEEEccccccC-ChhHHHHHHHHhhcCCCeEEEEEec
Q 037961           96 TQ--SSVDLVTIASALHWF-DLPQFYKQVKWVLKKPSGVIAAWTY  137 (262)
Q Consensus        96 ~~--~~~D~V~~~~~~~~~-d~~~~l~~~~r~Lk~pgG~l~i~~~  137 (262)
                      .+  ..+|+|+..-....- .+..+.+++.+.+| |||+++....
T Consensus       243 ~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mk-pGgvIVdvg~  286 (509)
T PRK09424        243 AEQAKEVDIIITTALIPGKPAPKLITAEMVASMK-PGSVIVDLAA  286 (509)
T ss_pred             HhccCCCCEEEECCCCCcccCcchHHHHHHHhcC-CCCEEEEEcc
Confidence            11  469999976665443 33334599999999 9999997655

>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.45  E-value=0.048  Score=47.07  Aligned_cols=101  Identities=16%  Similarity=0.121  Sum_probs=70.1

Q ss_pred             CCCCeEEEEcCcc-cHhHHHHHhh-C-CeEEEEcCCHHHHHHHhcCCCceEEeCC-C-Cchhhhhh---ccCCCCceeeE
Q 037961           32 PKRNLAWDVGTRS-GQAAASLAQI-Y-QHVIATDTSPKQLKFAIKLPNIRYQLTP-T-MSITELEQ---NVATQSSVDLV  103 (262)
Q Consensus        32 ~~~~~vlDvGcG~-G~~~~~l~~~-~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~-~-~~~~~~~~---~~~~~~~~D~V  103 (262)
                      +.+.+||=+|+|+ |.++...++. | .+|+.+|+++.-++.|++. +.+..... . .+.+++.+   -.+....+|.+
T Consensus       168 k~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~~-Ga~~~~~~~~~~~~~~~~~~v~~~~g~~~~d~~  246 (354)
T KOG0024|consen  168 KKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKKF-GATVTDPSSHKSSPQELAELVEKALGKKQPDVT  246 (354)
T ss_pred             ccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHHh-CCeEEeeccccccHHHHHHHHHhhccccCCCeE
Confidence            5788999999997 8888888775 4 4899999999999999985 33322222 1 11222211   12344558988


Q ss_pred             EEccccccCChhHHHHHHHHhhcCCCeEEEEEecCC
Q 037961          104 TIASALHWFDLPQFYKQVKWVLKKPSGVIAAWTYTM  139 (262)
Q Consensus       104 ~~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~~~  139 (262)
                      +-...+     +..++.+...+| +||++++..+..
T Consensus       247 ~dCsG~-----~~~~~aai~a~r-~gGt~vlvg~g~  276 (354)
T KOG0024|consen  247 FDCSGA-----EVTIRAAIKATR-SGGTVVLVGMGA  276 (354)
T ss_pred             EEccCc-----hHHHHHHHHHhc-cCCEEEEeccCC
Confidence            865554     467777889999 999988866554

>PLN02668 indole-3-acetate carboxyl methyltransferase

Probab=96.35  E-value=0.023  Score=50.70  Aligned_cols=25  Identities=24%  Similarity=0.503  Sum_probs=20.8

Q ss_pred             hhhhccCCCCceeeEEEccccccCC
Q 037961           89 ELEQNVATQSSVDLVTIASALHWFD  113 (262)
Q Consensus        89 ~~~~~~~~~~~~D~V~~~~~~~~~d  113 (262)
                      .+..--+|+++.++++++.++||+.
T Consensus       152 SFY~RLfP~~Slh~~~Ss~slHWLS  176 (386)
T PLN02668        152 SFYRRLFPARSIDVFHSAFSLHWLS  176 (386)
T ss_pred             cccccccCCCceEEEEeeccceecc
Confidence            4445557999999999999999993

>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members

Probab=96.31  E-value=0.064  Score=46.57  Aligned_cols=100  Identities=18%  Similarity=0.181  Sum_probs=66.2

Q ss_pred             CCCCCeEEEEcCcc-cHhHHHHHhh-CCeEEEEcCCHHHHHHHhcCCCceEEeCC-CCchhhhhhccCCCCceeeEEEcc
Q 037961           31 TPKRNLAWDVGTRS-GQAAASLAQI-YQHVIATDTSPKQLKFAIKLPNIRYQLTP-TMSITELEQNVATQSSVDLVTIAS  107 (262)
Q Consensus        31 ~~~~~~vlDvGcG~-G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~D~V~~~~  107 (262)
                      ..++.+||..|+|. |..+..+++. |.+|++++.++...+.+++.. +..+... .....+.-. ....+.+|+|+...
T Consensus       163 ~~~~~~vli~g~g~vG~~~~~la~~~G~~V~~~~~s~~~~~~~~~~g-~~~~~~~~~~~~~~~~~-~~~~~~~D~vid~~  240 (338)
T cd08254         163 VKPGETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKEEKLELAKELG-ADEVLNSLDDSPKDKKA-AGLGGGFDVIFDFV  240 (338)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhC-CCEEEcCCCcCHHHHHH-HhcCCCceEEEECC
Confidence            34667788888874 7888777774 889999999999998887642 3333222 111111101 12456799988542


Q ss_pred             ccccCChhHHHHHHHHhhcCCCeEEEEEecC
Q 037961          108 ALHWFDLPQFYKQVKWVLKKPSGVIAAWTYT  138 (262)
Q Consensus       108 ~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~~  138 (262)
                      .     ....++++.+.|+ ++|+++.+...
T Consensus       241 g-----~~~~~~~~~~~l~-~~G~~v~~g~~  265 (338)
T cd08254         241 G-----TQPTFEDAQKAVK-PGGRIVVVGLG  265 (338)
T ss_pred             C-----CHHHHHHHHHHhh-cCCEEEEECCC
Confidence            2     2457889999999 99999986543

This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio

>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]

Probab=96.18  E-value=0.027  Score=48.30  Aligned_cols=112  Identities=18%  Similarity=0.162  Sum_probs=71.7

Q ss_pred             HHHHHHHHhhCCC------CCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHh-------cC-------------
Q 037961           21 KELFKLIASKTPK------RNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAI-------KL-------------   74 (262)
Q Consensus        21 ~~~~~~l~~~~~~------~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~-------~~-------------   74 (262)
                      ..+++.|.++.|+      ...||--|||.|.++..|+..|..+-|-+.|--|+=...       ..             
T Consensus       132 kpii~~l~~lfp~~~~~r~ki~iLvPGaGlGRLa~dla~~G~~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~s  211 (369)
T KOG2798|consen  132 KPIIEELNSLFPSRGKERTKIRILVPGAGLGRLAYDLACLGFKCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYS  211 (369)
T ss_pred             hhHHHHHHhhCCCccccccCceEEecCCCchhHHHHHHHhcccccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccc
Confidence            5667777777764      578899999999999999999999999898888765321       10             


Q ss_pred             --------------CCceEE-eCC---CC--chhhhhhc-c--CCCCceeeEEEccccccC-ChhHHHHHHHHhhcCCCe
Q 037961           75 --------------PNIRYQ-LTP---TM--SITELEQN-V--ATQSSVDLVTIASALHWF-DLPQFYKQVKWVLKKPSG  130 (262)
Q Consensus        75 --------------~~~~~~-~~~---~~--~~~~~~~~-~--~~~~~~D~V~~~~~~~~~-d~~~~l~~~~r~Lk~pgG  130 (262)
                                    |.+... ...   .+  -.+|+-+. +  -..++||+|+.++-+.-. +.-..+..+..+|| |||
T Consensus       212 n~~~~dDQlrpi~~PD~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDTa~NileYi~tI~~iLk-~GG  290 (369)
T KOG2798|consen  212 NSLSRDDQLRPISIPDIHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDTAHNILEYIDTIYKILK-PGG  290 (369)
T ss_pred             cccccccccccccCccccccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeechHHHHHHHHHHHHhcc-CCc
Confidence                          001000 000   00  00222221 1  122469999977433333 34458899999999 999


Q ss_pred             EEE
Q 037961          131 VIA  133 (262)
Q Consensus       131 ~l~  133 (262)
                      +.+
T Consensus       291 vWi  293 (369)
T KOG2798|consen  291 VWI  293 (369)
T ss_pred             EEE
Confidence            876

>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]

Probab=96.07  E-value=0.065  Score=49.66  Aligned_cols=117  Identities=21%  Similarity=0.262  Sum_probs=78.0

Q ss_pred             hHHHHHHHHhhCC--CCCeEEEEcCcccHhHHHHHhh----C--CeEEEEcCCHHHHHHHhcC---CCceE----EeCCC
Q 037961           20 PKELFKLIASKTP--KRNLAWDVGTRSGQAAASLAQI----Y--QHVIATDTSPKQLKFAIKL---PNIRY----QLTPT   84 (262)
Q Consensus        20 p~~~~~~l~~~~~--~~~~vlDvGcG~G~~~~~l~~~----~--~~v~~vD~s~~~~~~a~~~---~~~~~----~~~~~   84 (262)
                      |.++.+.|...+.  +..+|+|-.||+|.........    .  ..+.|.|.++.....|+.+   .++.+    ..++.
T Consensus       171 P~~v~~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~~dt  250 (489)
T COG0286         171 PREVSELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANIRHGDT  250 (489)
T ss_pred             hHHHHHHHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCcccccccccc
Confidence            7788888877764  6678999999999877766543    1  4588999999999998853   34433    22221


Q ss_pred             CchhhhhhccCCCCceeeEEEccccc---cC-C---------------------h-hHHHHHHHHhhcCCCeEEEEEecC
Q 037961           85 MSITELEQNVATQSSVDLVTIASALH---WF-D---------------------L-PQFYKQVKWVLKKPSGVIAAWTYT  138 (262)
Q Consensus        85 ~~~~~~~~~~~~~~~~D~V~~~~~~~---~~-d---------------------~-~~~l~~~~r~Lk~pgG~l~i~~~~  138 (262)
                      +....... ....+.||.|+++..+-   |- +                     . ..+++.+...|+ |||+.++....
T Consensus       251 l~~~~~~~-~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~-~~g~aaivl~~  328 (489)
T COG0286         251 LSNPKHDD-KDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLK-PGGRAAIVLPD  328 (489)
T ss_pred             ccCCcccc-cCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcC-CCceEEEEecC
Confidence            11100000 22447799999986663   22 1                     1 347899999999 99987775544

>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria

Probab=96.06  E-value=0.032  Score=48.22  Aligned_cols=90  Identities=14%  Similarity=0.186  Sum_probs=57.5

Q ss_pred             hCCCChHHHHHHHHhhCCCCCeEEEEcCcccHhHHHHHhh--CCeEEEEcCCHHHHHHHhcC-----CCceEEeCCCCch
Q 037961           15 ARPNYPKELFKLIASKTPKRNLAWDVGTRSGQAAASLAQI--YQHVIATDTSPKQLKFAIKL-----PNIRYQLTPTMSI   87 (262)
Q Consensus        15 ~rp~yp~~~~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~-----~~~~~~~~~~~~~   87 (262)
                      |.|...++.++.|.  ..++...+|.--|.|..|..+++.  ..+++|+|.++.+++.+++.     .++.++.+.   +
T Consensus         4 H~PVll~Evl~~L~--~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~~~r~~~~~~~---F   78 (310)
T PF01795_consen    4 HIPVLLKEVLEALN--PKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKFDDRFIFIHGN---F   78 (310)
T ss_dssp             ---TTHHHHHHHHT----TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCCCTTEEEEES----G
T ss_pred             eecccHHHHHHhhC--cCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhccceEEEEecc---H
Confidence            66778888888876  346778999999999999999875  57999999999999988864     467777665   2


Q ss_pred             hhhhhcc--C-CCCceeeEEEcccc
Q 037961           88 TELEQNV--A-TQSSVDLVTIASAL  109 (262)
Q Consensus        88 ~~~~~~~--~-~~~~~D~V~~~~~~  109 (262)
                      .++...-  . ...++|.|++..++
T Consensus        79 ~~l~~~l~~~~~~~~~dgiL~DLGv  103 (310)
T PF01795_consen   79 SNLDEYLKELNGINKVDGILFDLGV  103 (310)
T ss_dssp             GGHHHHHHHTTTTS-EEEEEEE-S-
T ss_pred             HHHHHHHHHccCCCccCEEEEcccc
Confidence            2222211  1 34578888875444

The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.

>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]

Probab=96.01  E-value=0.056  Score=45.19  Aligned_cols=98  Identities=13%  Similarity=0.146  Sum_probs=63.8

Q ss_pred             CCCeEEEEcCcccHhHHHHHh-hCCeEEEEcCCHHHHHHHhc--C-------C--CceEEeCCCCchh-hhhhccCCCCc
Q 037961           33 KRNLAWDVGTRSGQAAASLAQ-IYQHVIATDTSPKQLKFAIK--L-------P--NIRYQLTPTMSIT-ELEQNVATQSS   99 (262)
Q Consensus        33 ~~~~vlDvGcG~G~~~~~l~~-~~~~v~~vD~s~~~~~~a~~--~-------~--~~~~~~~~~~~~~-~~~~~~~~~~~   99 (262)
                      +...|||+|+|+|-.+...+. .+++|+..|+...+......  .       .  .+.+...+ |... +....+ +. .
T Consensus        86 ~~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~-Wg~~~~~~~~~-~~-~  162 (248)
T KOG2793|consen   86 KYINVLELGSGTGLVGILAALLLGAEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILV-WGNALDVSFRL-PN-P  162 (248)
T ss_pred             cceeEEEecCCccHHHHHHHHHhcceeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEe-cCCcccHhhcc-CC-c
Confidence            456799999999988887777 47899999998665543221  1       1  22222222 1111 112221 22 2


Q ss_pred             eeeEEEccccccC-ChhHHHHHHHHhhcCCCeEEEE
Q 037961          100 VDLVTIASALHWF-DLPQFYKQVKWVLKKPSGVIAA  134 (262)
Q Consensus       100 ~D~V~~~~~~~~~-d~~~~l~~~~r~Lk~pgG~l~i  134 (262)
                      +|+|+++-++..- .++.+..-++.+|- -+|++.+
T Consensus       163 ~DlilasDvvy~~~~~e~Lv~tla~ll~-~~~~i~l  197 (248)
T KOG2793|consen  163 FDLILASDVVYEEESFEGLVKTLAFLLA-KDGTIFL  197 (248)
T ss_pred             ccEEEEeeeeecCCcchhHHHHHHHHHh-cCCeEEE
Confidence            9999999999877 78888888999998 6774444

>PHA01634 hypothetical protein

Probab=95.97  E-value=0.057  Score=40.16  Aligned_cols=70  Identities=13%  Similarity=-0.007  Sum_probs=50.8

Q ss_pred             CCCeEEEEcCcccHhHHHHHhhCC-eEEEEcCCHHHHHHHhcCCCceEEeCCCCchhhhhhccCCCCceeeEEE
Q 037961           33 KRNLAWDVGTRSGQAAASLAQIYQ-HVIATDTSPKQLKFAIKLPNIRYQLTPTMSITELEQNVATQSSVDLVTI  105 (262)
Q Consensus        33 ~~~~vlDvGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~  105 (262)
                      .+.+|+|+|++-|..+..++-+|+ .|+++++++...+..++.-+...++.....   -.+|+-.-++||+.++
T Consensus        28 k~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~nnI~DK~v~---~~eW~~~Y~~~Di~~i   98 (156)
T PHA01634         28 YQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAYFNICDKAVM---KGEWNGEYEDVDIFVM   98 (156)
T ss_pred             cCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhhheeeeceee---cccccccCCCcceEEE
Confidence            678899999999999999998876 799999999999988874333333322111   1234445677888774

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=95.93  E-value=0.014  Score=53.19  Aligned_cols=138  Identities=15%  Similarity=0.180  Sum_probs=74.9

Q ss_pred             hhhHHHHHHHHhhCCCChHHHHHHHHh-hC--CCCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhcCCCceE
Q 037961            3 ELFIKQANLYAVARPNYPKELFKLIAS-KT--PKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKLPNIRY   79 (262)
Q Consensus         3 ~~F~~~a~~Y~~~rp~yp~~~~~~l~~-~~--~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~   79 (262)
                      +.|.++.+.+.+.--.| ..    +.. .+  ..-+.|+|..+|.|.++..|....  |....+-|.   .......+-+
T Consensus       337 e~F~~Dt~~Wk~~V~~Y-~~----l~~~~i~~~~iRNVMDMnAg~GGFAAAL~~~~--VWVMNVVP~---~~~ntL~vIy  406 (506)
T PF03141_consen  337 EEFKEDTKHWKKRVSHY-KK----LLGLAIKWGRIRNVMDMNAGYGGFAAALIDDP--VWVMNVVPV---SGPNTLPVIY  406 (506)
T ss_pred             HHHHHHHHHHHHHHHHH-HH----hhcccccccceeeeeeecccccHHHHHhccCC--ceEEEeccc---CCCCcchhhh
Confidence            56777777776643222 11    112 22  244779999999999999997754  333333222   0000011111


Q ss_pred             EeCCCCchhhh-hhccCCCCceeeEEEccccc----cCChhHHHHHHHHhhcCCCeEEEEEecCCCcccHHHHHhhccc
Q 037961           80 QLTPTMSITEL-EQNVATQSSVDLVTIASALH----WFDLPQFYKQVKWVLKKPSGVIAAWTYTMPEINESVGAVFKPF  153 (262)
Q Consensus        80 ~~~~~~~~~~~-~~~~~~~~~~D~V~~~~~~~----~~d~~~~l~~~~r~Lk~pgG~l~i~~~~~~~~~~~~~~~~~~~  153 (262)
                      ..|-.-...|. |..+.=+.+||+|.+...|-    -++.+.++-|+.|+|| |||.++|=.  ...+..++..+...+
T Consensus       407 dRGLIG~yhDWCE~fsTYPRTYDLlHA~~lfs~~~~rC~~~~illEmDRILR-P~G~~iiRD--~~~vl~~v~~i~~~l  482 (506)
T PF03141_consen  407 DRGLIGVYHDWCEAFSTYPRTYDLLHADGLFSLYKDRCEMEDILLEMDRILR-PGGWVIIRD--TVDVLEKVKKIAKSL  482 (506)
T ss_pred             hcccchhccchhhccCCCCcchhheehhhhhhhhcccccHHHHHHHhHhhcC-CCceEEEec--cHHHHHHHHHHHHhC
Confidence            11110000000 11222357899999886663    3367779999999999 999998811  112234555555443

; GO: 0008168 methyltransferase activity

>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.81  E-value=0.0042  Score=47.66  Aligned_cols=44  Identities=18%  Similarity=0.220  Sum_probs=37.0

Q ss_pred             ccCCCCceeeEEEccccccCC---hhHHHHHHHHhhcCCCeEEEEEec
Q 037961           93 NVATQSSVDLVTIASALHWFD---LPQFYKQVKWVLKKPSGVIAAWTY  137 (262)
Q Consensus        93 ~~~~~~~~D~V~~~~~~~~~d---~~~~l~~~~r~Lk~pgG~l~i~~~  137 (262)
                      .++.+++.|+|++...+.|+-   -..++++|+|+|| |||.|-|...
T Consensus        41 ~~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lr-p~G~LriAvP   87 (185)
T COG4627          41 SMFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLR-PGGKLRIAVP   87 (185)
T ss_pred             ccCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhC-cCcEEEEEcC
Confidence            457899999999999998882   3348999999999 9999988443

>KOG3115 consensus Methyltransferase-like protein [General function prediction only]

Probab=95.75  E-value=0.029  Score=45.19  Aligned_cols=38  Identities=16%  Similarity=0.177  Sum_probs=31.2

Q ss_pred             CeEEEEcCcccHhHHHHHhhCC--eEEEEcCCHHHHHHHh
Q 037961           35 NLAWDVGTRSGQAAASLAQIYQ--HVIATDTSPKQLKFAI   72 (262)
Q Consensus        35 ~~vlDvGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~   72 (262)
                      -.+.|||||-|.+...|++.+.  -++|.++--...++.+
T Consensus        62 vefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk  101 (249)
T KOG3115|consen   62 VEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVK  101 (249)
T ss_pred             ceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHH
Confidence            4579999999999999999865  4778888777766654

>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=95.70  E-value=0.14  Score=42.70  Aligned_cols=99  Identities=26%  Similarity=0.217  Sum_probs=64.4

Q ss_pred             CCCCeEEEEcCcc-cHhHHHHHh-hCCeEEEEcCCHHHHHHHhcCCCceEEeCCCC-chhhhhhccCCCCceeeEEEccc
Q 037961           32 PKRNLAWDVGTRS-GQAAASLAQ-IYQHVIATDTSPKQLKFAIKLPNIRYQLTPTM-SITELEQNVATQSSVDLVTIASA  108 (262)
Q Consensus        32 ~~~~~vlDvGcG~-G~~~~~l~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~D~V~~~~~  108 (262)
                      .++.+||-.|+|+ |..+..+++ .+.+|++++.++...+.+++......+..... ....+.  ....+.+|+|+....
T Consensus       133 ~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~--~~~~~~~d~vi~~~~  210 (271)
T cd05188         133 KPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKELGADHVIDYKEEDLEEELR--LTGGGGADVVIDAVG  210 (271)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhCCceeccCCcCCHHHHHH--HhcCCCCCEEEECCC
Confidence            5678899999996 767766666 48899999999988887765422122211110 001111  123457999986433


Q ss_pred             cccCChhHHHHHHHHhhcCCCeEEEEEecC
Q 037961          109 LHWFDLPQFYKQVKWVLKKPSGVIAAWTYT  138 (262)
Q Consensus       109 ~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~~  138 (262)
                           ....+..+.+.|+ ++|+++.+...
T Consensus       211 -----~~~~~~~~~~~l~-~~G~~v~~~~~  234 (271)
T cd05188         211 -----GPETLAQALRLLR-PGGRIVVVGGT  234 (271)
T ss_pred             -----CHHHHHHHHHhcc-cCCEEEEEccC
Confidence                 1256788889999 99999975543

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro

>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]

Probab=95.69  E-value=0.027  Score=47.86  Aligned_cols=115  Identities=13%  Similarity=0.184  Sum_probs=78.4

Q ss_pred             CCCChHHHHHHHHhhCCCCCeEEEEcCcccHhHHHHHhh--CCeEEEEcCCHHHHHHHhcC----------CCceEEeCC
Q 037961           16 RPNYPKELFKLIASKTPKRNLAWDVGTRSGQAAASLAQI--YQHVIATDTSPKQLKFAIKL----------PNIRYQLTP   83 (262)
Q Consensus        16 rp~yp~~~~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~----------~~~~~~~~~   83 (262)
                      |-.|-+.+...-...++....+|-||-|.|.+.+....+  ..++.-+|++...++..++.          +++....+|
T Consensus       104 e~~Yqemi~~l~l~s~~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGD  183 (337)
T KOG1562|consen  104 EFAYQEMIAHLALCSHPNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGD  183 (337)
T ss_pred             cccceeeeeccccccCCCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEecc
Confidence            345533333333344567788999999999999888776  45799999999999888763          677777777


Q ss_pred             CCchhhhhhccCCCCceeeEEEccccccCC-----hhHHHHHHHHhhcCCCeEEEEE
Q 037961           84 TMSITELEQNVATQSSVDLVTIASALHWFD-----LPQFYKQVKWVLKKPSGVIAAW  135 (262)
Q Consensus        84 ~~~~~~~~~~~~~~~~~D~V~~~~~~~~~d-----~~~~l~~~~r~Lk~pgG~l~i~  135 (262)
                      .+.+  .+.  ...++||+|+.-.+=.-.+     .+..++.+.+.|| +||++++-
T Consensus       184 G~~f--l~~--~~~~~~dVii~dssdpvgpa~~lf~~~~~~~v~~aLk-~dgv~~~q  235 (337)
T KOG1562|consen  184 GFLF--LED--LKENPFDVIITDSSDPVGPACALFQKPYFGLVLDALK-GDGVVCTQ  235 (337)
T ss_pred             HHHH--HHH--hccCCceEEEEecCCccchHHHHHHHHHHHHHHHhhC-CCcEEEEe
Confidence            2111  111  2478899999643322222     2336778999999 99999873

>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase

Probab=95.60  E-value=0.18  Score=44.53  Aligned_cols=100  Identities=18%  Similarity=0.188  Sum_probs=64.4

Q ss_pred             CCCCeEEEEcCcc-cHhHHHHHhh-CC-eEEEEcCCHHHHHHHhcCCCceEEeCCCCch-hhhhhccCCCCceeeEEEcc
Q 037961           32 PKRNLAWDVGTRS-GQAAASLAQI-YQ-HVIATDTSPKQLKFAIKLPNIRYQLTPTMSI-TELEQNVATQSSVDLVTIAS  107 (262)
Q Consensus        32 ~~~~~vlDvGcG~-G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~D~V~~~~  107 (262)
                      .++.+||=.|||. |..+.++++. |. +|+++|.++..++.+++...-.++.....+. ..+.... ....+|+|+-..
T Consensus       175 ~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~i~~~~-~~~g~d~vid~~  253 (358)
T TIGR03451       175 KRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREFGATHTVNSSGTDPVEAIRALT-GGFGADVVIDAV  253 (358)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEEcCCCcCHHHHHHHHh-CCCCCCEEEECC
Confidence            5678888889875 7777777765 76 4999999999999888653222222211000 1122221 233589988432


Q ss_pred             ccccCChhHHHHHHHHhhcCCCeEEEEEecC
Q 037961          108 ALHWFDLPQFYKQVKWVLKKPSGVIAAWTYT  138 (262)
Q Consensus       108 ~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~~  138 (262)
                      .     -...+..+.+.|+ +||+++++...
T Consensus       254 g-----~~~~~~~~~~~~~-~~G~iv~~G~~  278 (358)
T TIGR03451       254 G-----RPETYKQAFYARD-LAGTVVLVGVP  278 (358)
T ss_pred             C-----CHHHHHHHHHHhc-cCCEEEEECCC
Confidence            2     1356788889999 99999986643

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.

>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases

Probab=95.47  E-value=0.081  Score=40.26  Aligned_cols=79  Identities=18%  Similarity=0.233  Sum_probs=49.8

Q ss_pred             eEEEEcCCHHHHHHHhcC-------CCceEEeCCCCchhhhhhccCCCCceeeEEEccccc-----cC--C---hhHHHH
Q 037961           57 HVIATDTSPKQLKFAIKL-------PNIRYQLTPTMSITELEQNVATQSSVDLVTIASALH-----WF--D---LPQFYK  119 (262)
Q Consensus        57 ~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~~-----~~--d---~~~~l~  119 (262)
                      +|+|.|+-+..++..+++       .+++++....   +.+... ++.+++|+|+.|.+.-     -+  .   .-++++
T Consensus         1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sH---e~l~~~-i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~   76 (140)
T PF06962_consen    1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSH---ENLDEY-IPEGPVDAAIFNLGYLPGGDKSITTKPETTLKALE   76 (140)
T ss_dssp             EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-G---GGGGGT---S--EEEEEEEESB-CTS-TTSB--HHHHHHHHH
T ss_pred             CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCH---HHHHhh-CccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHH
Confidence            589999999999988752       3577777652   112222 2336899999886652     11  2   233899


Q ss_pred             HHHHhhcCCCeEEEEEecC-CC
Q 037961          120 QVKWVLKKPSGVIAAWTYT-MP  140 (262)
Q Consensus       120 ~~~r~Lk~pgG~l~i~~~~-~~  140 (262)
                      .+.++|+ |||.+.+..|. ++
T Consensus        77 ~al~lL~-~gG~i~iv~Y~GH~   97 (140)
T PF06962_consen   77 AALELLK-PGGIITIVVYPGHP   97 (140)
T ss_dssp             HHHHHEE-EEEEEEEEE--STC
T ss_pred             HHHHhhc-cCCEEEEEEeCCCC
Confidence            9999999 99999997775 44

; PDB: 3EEY_H 3LBY_A 3MTI_A.

>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised

Probab=95.31  E-value=0.014  Score=48.31  Aligned_cols=73  Identities=19%  Similarity=0.089  Sum_probs=43.0

Q ss_pred             CeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhc-------C--------CCceEEeCCCCchhhhhhccCCCCc
Q 037961           35 NLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIK-------L--------PNIRYQLTPTMSITELEQNVATQSS   99 (262)
Q Consensus        35 ~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~-------~--------~~~~~~~~~~~~~~~~~~~~~~~~~   99 (262)
                      .+|||+-||-|.=+..++..|++|+++|-||.+....+.       .        .+++.+.++.     .+.+..++.+
T Consensus        77 ~~VLDaTaGLG~Da~vlA~~G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~-----~~~L~~~~~s  151 (234)
T PF04445_consen   77 PSVLDATAGLGRDAFVLASLGCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDA-----LEYLRQPDNS  151 (234)
T ss_dssp             --EEETT-TTSHHHHHHHHHT--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-C-----CCHCCCHSS-
T ss_pred             CEEEECCCcchHHHHHHHccCCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCH-----HHHHhhcCCC
Confidence            489999999999999999889999999999987665442       1        2567777652     2223346789


Q ss_pred             eeeEEEccccccC
Q 037961          100 VDLVTIASALHWF  112 (262)
Q Consensus       100 ~D~V~~~~~~~~~  112 (262)
                      ||+|+...++..-
T Consensus       152 ~DVVY~DPMFp~~  164 (234)
T PF04445_consen  152 FDVVYFDPMFPER  164 (234)
T ss_dssp             -SEEEE--S----
T ss_pred             CCEEEECCCCCCc
Confidence            9999998887653

; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.

>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=95.19  E-value=0.034  Score=45.70  Aligned_cols=96  Identities=17%  Similarity=0.189  Sum_probs=56.9

Q ss_pred             CCCChHHHHHHHHhhCC----CCCeEEEEcCcccHhHH--HHHhhCCeEEEEcCCHHHHHHHhc----CC----CceEEe
Q 037961           16 RPNYPKELFKLIASKTP----KRNLAWDVGTRSGQAAA--SLAQIYQHVIATDTSPKQLKFAIK----LP----NIRYQL   81 (262)
Q Consensus        16 rp~yp~~~~~~l~~~~~----~~~~vlDvGcG~G~~~~--~l~~~~~~v~~vD~s~~~~~~a~~----~~----~~~~~~   81 (262)
                      |..|-.-+.+.|.+..+    ++.++||||.|.--.=-  -...+|.+.+|.|+++..++.|+.    ++    .++...
T Consensus        57 RAdYih~laDLL~s~~g~~~~~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~  136 (292)
T COG3129          57 RADYIHHLADLLASTSGQIPGKNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPGLERAIRLRR  136 (292)
T ss_pred             hhHHHHHHHHHHHhcCCCCCcCceEEEeeccCcccccccccceeecceeecCccCHHHHHHHHHHHHcCcchhhheeEEe
Confidence            44444445555554432    56788999988642211  122468899999999999998874    22    233332


Q ss_pred             CCCCchhhhhhccCCCCceeeEEEccccccC
Q 037961           82 TPTMSITELEQNVATQSSVDLVTIASALHWF  112 (262)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~D~V~~~~~~~~~  112 (262)
                      ...-. .-+..+--.++.||.++|+..||-.
T Consensus       137 qk~~~-~if~giig~nE~yd~tlCNPPFh~s  166 (292)
T COG3129         137 QKDSD-AIFNGIIGKNERYDATLCNPPFHDS  166 (292)
T ss_pred             ccCcc-ccccccccccceeeeEecCCCcchh
Confidence            22000 0011121137789999999999954

>cd08230 glucose_DH Glucose dehydrogenase

Probab=95.06  E-value=0.25  Score=43.52  Aligned_cols=96  Identities=18%  Similarity=0.189  Sum_probs=63.0

Q ss_pred             CCCCeEEEEcCcc-cHhHHHHHhh-CCeEEEEcC---CHHHHHHHhcCCCceEEeCCCCchhhhhhccCCCCceeeEEEc
Q 037961           32 PKRNLAWDVGTRS-GQAAASLAQI-YQHVIATDT---SPKQLKFAIKLPNIRYQLTPTMSITELEQNVATQSSVDLVTIA  106 (262)
Q Consensus        32 ~~~~~vlDvGcG~-G~~~~~l~~~-~~~v~~vD~---s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~  106 (262)
                      .++.+||=.|+|. |.++.++++. +.+|++++.   ++.-++.+++. +...+.....   +..... ..+.+|+|+-.
T Consensus       171 ~~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~-Ga~~v~~~~~---~~~~~~-~~~~~d~vid~  245 (355)
T cd08230         171 WNPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEEL-GATYVNSSKT---PVAEVK-LVGEFDLIIEA  245 (355)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHc-CCEEecCCcc---chhhhh-hcCCCCEEEEC
Confidence            3667888889885 7777777764 779999986   67777777765 3333322111   111111 12468998854


Q ss_pred             cccccCChhHHHHHHHHhhcCCCeEEEEEecC
Q 037961          107 SALHWFDLPQFYKQVKWVLKKPSGVIAAWTYT  138 (262)
Q Consensus       107 ~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~~  138 (262)
                      ..     ....+.++.++|+ +||+++++...
T Consensus       246 ~g-----~~~~~~~~~~~l~-~~G~~v~~G~~  271 (355)
T cd08230         246 TG-----VPPLAFEALPALA-PNGVVILFGVP  271 (355)
T ss_pred             cC-----CHHHHHHHHHHcc-CCcEEEEEecC
Confidence            33     2347888999999 99999886643

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]

Probab=95.06  E-value=0.036  Score=50.72  Aligned_cols=120  Identities=17%  Similarity=0.267  Sum_probs=84.8

Q ss_pred             hhhHHHHHHHHhhCCCChHHHHHHHHhhCC-----CCCeEEEEcCcccHhHHHHHh------hCCeEEEEcCCHHHHHHH
Q 037961            3 ELFIKQANLYAVARPNYPKELFKLIASKTP-----KRNLAWDVGTRSGQAAASLAQ------IYQHVIATDTSPKQLKFA   71 (262)
Q Consensus         3 ~~F~~~a~~Y~~~rp~yp~~~~~~l~~~~~-----~~~~vlDvGcG~G~~~~~l~~------~~~~v~~vD~s~~~~~~a   71 (262)
                      +.|+++.-.|+++    .+.+...|....+     ...+|+-+|+|-|-+.....+      +--++++++-+|..+-..
T Consensus       336 etFEkD~VKY~~Y----q~Ai~~AL~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL  411 (649)
T KOG0822|consen  336 ETFEKDPVKYDQY----QQAILKALLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTL  411 (649)
T ss_pred             hhhhccchHHHHH----HHHHHHHHHhhCcccccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhh
Confidence            5688888888885    4677777777654     235678999999988776544      234789999999998877


Q ss_pred             hcC------CCceEEeCCCCchhhhhhccCCCCceeeEEEccccccC-C---hhHHHHHHHHhhcCCCeEEEE
Q 037961           72 IKL------PNIRYQLTPTMSITELEQNVATQSSVDLVTIASALHWF-D---LPQFYKQVKWVLKKPSGVIAA  134 (262)
Q Consensus        72 ~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~~~~-d---~~~~l~~~~r~Lk~pgG~l~i  134 (262)
                      ...      ..+..+..      |...|+.+..+.|++++- .+.-| |   -.+.+..+.+.|| |.|+.+=
T Consensus       412 ~~~n~~~W~~~Vtii~~------DMR~w~ap~eq~DI~VSE-LLGSFGDNELSPECLDG~q~fLk-pdgIsIP  476 (649)
T KOG0822|consen  412 QNRNFECWDNRVTIISS------DMRKWNAPREQADIIVSE-LLGSFGDNELSPECLDGAQKFLK-PDGISIP  476 (649)
T ss_pred             hhhchhhhcCeeEEEec------cccccCCchhhccchHHH-hhccccCccCCHHHHHHHHhhcC-CCceEcc
Confidence            642      45555554      566676456889998863 33334 3   2348889999999 9987764

>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase

Probab=94.99  E-value=0.27  Score=42.57  Aligned_cols=86  Identities=17%  Similarity=0.101  Sum_probs=58.5

Q ss_pred             CCCeEEEEcCcc-cHhHHHHHhh-CCe-EEEEcCCHHHHHHHhcCCCceEEeCCCCchhhhhhccCCCCceeeEEEcccc
Q 037961           33 KRNLAWDVGTRS-GQAAASLAQI-YQH-VIATDTSPKQLKFAIKLPNIRYQLTPTMSITELEQNVATQSSVDLVTIASAL  109 (262)
Q Consensus        33 ~~~~vlDvGcG~-G~~~~~l~~~-~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~  109 (262)
                      ++.++|=+|||. |.++.++++. |++ |+++|.++..++.+....   .+..+    .+      ....+|+|+-... 
T Consensus       144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~~---~i~~~----~~------~~~g~Dvvid~~G-  209 (308)
T TIGR01202       144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGYE---VLDPE----KD------PRRDYRAIYDASG-  209 (308)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhcc---ccChh----hc------cCCCCCEEEECCC-
Confidence            456778889885 7788877764 765 678899988887776431   11110    00      1345899985433 


Q ss_pred             ccCChhHHHHHHHHhhcCCCeEEEEEec
Q 037961          110 HWFDLPQFYKQVKWVLKKPSGVIAAWTY  137 (262)
Q Consensus       110 ~~~d~~~~l~~~~r~Lk~pgG~l~i~~~  137 (262)
                          -...+..+.+.|+ +||+++++..
T Consensus       210 ----~~~~~~~~~~~l~-~~G~iv~~G~  232 (308)
T TIGR01202       210 ----DPSLIDTLVRRLA-KGGEIVLAGF  232 (308)
T ss_pred             ----CHHHHHHHHHhhh-cCcEEEEEee
Confidence                2357788999999 9999998664

>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein

Probab=94.95  E-value=0.34  Score=42.33  Aligned_cols=91  Identities=13%  Similarity=0.035  Sum_probs=60.8

Q ss_pred             CCCCCeEEEEcCcc-cHhHHHHHhh-CCeEEEEcCCHHHHHHHhcCCCceEEeCCCCchhhhhhccCCCCceeeEEEccc
Q 037961           31 TPKRNLAWDVGTRS-GQAAASLAQI-YQHVIATDTSPKQLKFAIKLPNIRYQLTPTMSITELEQNVATQSSVDLVTIASA  108 (262)
Q Consensus        31 ~~~~~~vlDvGcG~-G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~  108 (262)
                      .+++.+||=.|+|. |..+.++++. |.+|++++.+++-++.+++..--.++...        +.  ..+.+|+++...+
T Consensus       163 ~~~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~~Ga~~vi~~~--------~~--~~~~~d~~i~~~~  232 (329)
T TIGR02822       163 LPPGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALALGAASAGGAY--------DT--PPEPLDAAILFAP  232 (329)
T ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHhCCceecccc--------cc--CcccceEEEECCC
Confidence            35678889889764 6666666664 88999999999988888875221111110        00  1235787654322


Q ss_pred             cccCChhHHHHHHHHhhcCCCeEEEEEec
Q 037961          109 LHWFDLPQFYKQVKWVLKKPSGVIAAWTY  137 (262)
Q Consensus       109 ~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~  137 (262)
                      .     ...+....+.|+ +||+++++..
T Consensus       233 ~-----~~~~~~~~~~l~-~~G~~v~~G~  255 (329)
T TIGR02822       233 A-----GGLVPPALEALD-RGGVLAVAGI  255 (329)
T ss_pred             c-----HHHHHHHHHhhC-CCcEEEEEec
Confidence            1     247888999999 9999988664

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.

>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=94.93  E-value=0.11  Score=42.53  Aligned_cols=77  Identities=19%  Similarity=0.231  Sum_probs=56.1

Q ss_pred             HHHHHhhCCCCCeEEEEcCcccHhHHHHHhh--CCeEEEEcCCHHHHHHHhcC-------CCceEEeCCCCchhhhhhcc
Q 037961           24 FKLIASKTPKRNLAWDVGTRSGQAAASLAQI--YQHVIATDTSPKQLKFAIKL-------PNIRYQLTPTMSITELEQNV   94 (262)
Q Consensus        24 ~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~~~~~~   94 (262)
                      +..+++..+.+..+.|+||--|.+...|...  ...++++|+++.-++.|.++       +.+++..+|.     +..+.
T Consensus         7 L~~va~~V~~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dg-----l~~l~   81 (226)
T COG2384           7 LTTVANLVKQGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDG-----LAVLE   81 (226)
T ss_pred             HHHHHHHHHcCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCC-----ccccC
Confidence            4556667777777999999999999999886  45799999999999998752       4566666652     11111


Q ss_pred             CCCCceeeEEEc
Q 037961           95 ATQSSVDLVTIA  106 (262)
Q Consensus        95 ~~~~~~D~V~~~  106 (262)
                       ++..+|.|+.+
T Consensus        82 -~~d~~d~ivIA   92 (226)
T COG2384          82 -LEDEIDVIVIA   92 (226)
T ss_pred             -ccCCcCEEEEe
Confidence             23468888854

>cd08232 idonate-5-DH L-idonate 5-dehydrogenase

Probab=94.92  E-value=0.38  Score=41.93  Aligned_cols=96  Identities=19%  Similarity=0.174  Sum_probs=62.4

Q ss_pred             CCCeEEEEcCcc-cHhHHHHHhh-CC-eEEEEcCCHHHHHHHhcCCCceEEeCCCCchhhhhhccCCCCceeeEEEcccc
Q 037961           33 KRNLAWDVGTRS-GQAAASLAQI-YQ-HVIATDTSPKQLKFAIKLPNIRYQLTPTMSITELEQNVATQSSVDLVTIASAL  109 (262)
Q Consensus        33 ~~~~vlDvGcG~-G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~  109 (262)
                      ++.+||-.|||. |..+..+++. |. ++++++.++...+.+++...-.++....   .++..+....+.+|+|+.... 
T Consensus       165 ~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~~g~~~vi~~~~---~~~~~~~~~~~~vd~vld~~g-  240 (339)
T cd08232         165 AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARAMGADETVNLAR---DPLAAYAADKGDFDVVFEASG-  240 (339)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHcCCCEEEcCCc---hhhhhhhccCCCccEEEECCC-
Confidence            667778888876 7777777764 76 7999999999888776643212222111   011122212345899985433 


Q ss_pred             ccCChhHHHHHHHHhhcCCCeEEEEEec
Q 037961          110 HWFDLPQFYKQVKWVLKKPSGVIAAWTY  137 (262)
Q Consensus       110 ~~~d~~~~l~~~~r~Lk~pgG~l~i~~~  137 (262)
                          ....++++.+.|+ ++|+++.+..
T Consensus       241 ----~~~~~~~~~~~L~-~~G~~v~~g~  263 (339)
T cd08232         241 ----APAALASALRVVR-PGGTVVQVGM  263 (339)
T ss_pred             ----CHHHHHHHHHHHh-cCCEEEEEec
Confidence                1346789999999 9999987653

L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai

>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3)

Probab=94.85  E-value=0.016  Score=41.90  Aligned_cols=35  Identities=23%  Similarity=0.650  Sum_probs=28.7

Q ss_pred             ceeeEEEccccccCC-------hhHHHHHHHHhhcCCCeEEEE
Q 037961           99 SVDLVTIASALHWFD-------LPQFYKQVKWVLKKPSGVIAA  134 (262)
Q Consensus        99 ~~D~V~~~~~~~~~d-------~~~~l~~~~r~Lk~pgG~l~i  134 (262)
                      .||+|+|.....|+.       ...+++.+++.|+ |||.|++
T Consensus         1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~-pGG~lil   42 (110)
T PF06859_consen    1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLR-PGGILIL   42 (110)
T ss_dssp             -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEE-EEEEEEE
T ss_pred             CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhC-CCCEEEE
Confidence            489999999888883       3348999999999 9999998

Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.

>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase

Probab=94.85  E-value=0.25  Score=43.45  Aligned_cols=92  Identities=15%  Similarity=0.130  Sum_probs=60.6

Q ss_pred             CCCCeEEEEcCcc-cHhHHHHHhh---CCeEEEEcCCHHHHHHHhcCCCceEEeCCCCchhhhhhccCCCCceeeEEEcc
Q 037961           32 PKRNLAWDVGTRS-GQAAASLAQI---YQHVIATDTSPKQLKFAIKLPNIRYQLTPTMSITELEQNVATQSSVDLVTIAS  107 (262)
Q Consensus        32 ~~~~~vlDvGcG~-G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~  107 (262)
                      +++.+||=+|||+ |..+..++++   +.+|+++|.++.-++.+++. .......      +..    ....+|+|+-..
T Consensus       162 ~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~~-~~~~~~~------~~~----~~~g~d~viD~~  230 (341)
T cd08237         162 KDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSFA-DETYLID------DIP----EDLAVDHAFECV  230 (341)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhhc-Cceeehh------hhh----hccCCcEEEECC
Confidence            5678899999986 7677666653   46899999999888887752 2211110      110    112489888433


Q ss_pred             ccccCChhHHHHHHHHhhcCCCeEEEEEec
Q 037961          108 ALHWFDLPQFYKQVKWVLKKPSGVIAAWTY  137 (262)
Q Consensus       108 ~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~  137 (262)
                      .-  -.....+..+.++|+ +||+++++..
T Consensus       231 G~--~~~~~~~~~~~~~l~-~~G~iv~~G~  257 (341)
T cd08237         231 GG--RGSQSAINQIIDYIR-PQGTIGLMGV  257 (341)
T ss_pred             CC--CccHHHHHHHHHhCc-CCcEEEEEee
Confidence            21  012457889999999 9999998664

NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (

>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like

Probab=94.74  E-value=0.45  Score=41.49  Aligned_cols=99  Identities=20%  Similarity=0.178  Sum_probs=62.3

Q ss_pred             CCCCeEEEEcCcc-cHhHHHHHhh-CCe-EEEEcCCHHHHHHHhcCCCceEEeCCCCchhhhhhccCCCCceeeEEEccc
Q 037961           32 PKRNLAWDVGTRS-GQAAASLAQI-YQH-VIATDTSPKQLKFAIKLPNIRYQLTPTMSITELEQNVATQSSVDLVTIASA  108 (262)
Q Consensus        32 ~~~~~vlDvGcG~-G~~~~~l~~~-~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~  108 (262)
                      .++.+||=.|+|. |.++.++++. |.+ |++++.+++..+.+++..--.++.........+.... ....+|+|+-...
T Consensus       162 ~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~-~~~~~d~vid~~g  240 (339)
T cd08239         162 SGRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKALGADFVINSGQDDVQEIRELT-SGAGADVAIECSG  240 (339)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEEcCCcchHHHHHHHh-CCCCCCEEEECCC
Confidence            4677888888864 6666666664 777 9999999999888876532222222110011122221 2346999984322


Q ss_pred             cccCChhHHHHHHHHhhcCCCeEEEEEec
Q 037961          109 LHWFDLPQFYKQVKWVLKKPSGVIAAWTY  137 (262)
Q Consensus       109 ~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~  137 (262)
                           ....+..+.+.|+ ++|+++++..
T Consensus       241 -----~~~~~~~~~~~l~-~~G~~v~~g~  263 (339)
T cd08239         241 -----NTAARRLALEAVR-PWGRLVLVGE  263 (339)
T ss_pred             -----CHHHHHHHHHHhh-cCCEEEEEcC
Confidence                 2346678889999 9999998654

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at

>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

Probab=94.70  E-value=0.4  Score=42.57  Aligned_cols=98  Identities=15%  Similarity=0.056  Sum_probs=63.0

Q ss_pred             CCCCeEEEEcCcc-cHhHHHHHhh-CC-eEEEEcCCHHHHHHHhcCCCceEEeCCCCc-hhhhhhccCCCCceeeEEEcc
Q 037961           32 PKRNLAWDVGTRS-GQAAASLAQI-YQ-HVIATDTSPKQLKFAIKLPNIRYQLTPTMS-ITELEQNVATQSSVDLVTIAS  107 (262)
Q Consensus        32 ~~~~~vlDvGcG~-G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~D~V~~~~  107 (262)
                      .++.+||=.|+|. |..+.++++. |+ +|+++|.++.-++.+++..-..++...... ...+...  ..+.+|+|+-..
T Consensus       190 ~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~i~~~--~~~g~d~vid~~  267 (371)
T cd08281         190 RPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARELGATATVNAGDPNAVEQVREL--TGGGVDYAFEMA  267 (371)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHcCCceEeCCCchhHHHHHHHH--hCCCCCEEEECC
Confidence            4667777789875 6677777764 77 699999999999988875322222221100 0111122  123689998432


Q ss_pred             ccccCChhHHHHHHHHhhcCCCeEEEEEec
Q 037961          108 ALHWFDLPQFYKQVKWVLKKPSGVIAAWTY  137 (262)
Q Consensus       108 ~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~  137 (262)
                      .     ....+..+.+.|+ +||+++++..
T Consensus       268 G-----~~~~~~~~~~~l~-~~G~iv~~G~  291 (371)
T cd08281         268 G-----SVPALETAYEITR-RGGTTVTAGL  291 (371)
T ss_pred             C-----ChHHHHHHHHHHh-cCCEEEEEcc
Confidence            2     2357888899999 9999988654

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd

>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase

Probab=94.68  E-value=0.39  Score=40.83  Aligned_cols=97  Identities=19%  Similarity=0.111  Sum_probs=62.2

Q ss_pred             CCCeEEEEcCcc-cHhHHHHHhh-CCe-EEEEcCCHHHHHHHhcCCCceEEeCCCCchhhhhhccCCCCceeeEEEcccc
Q 037961           33 KRNLAWDVGTRS-GQAAASLAQI-YQH-VIATDTSPKQLKFAIKLPNIRYQLTPTMSITELEQNVATQSSVDLVTIASAL  109 (262)
Q Consensus        33 ~~~~vlDvGcG~-G~~~~~l~~~-~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~  109 (262)
                      ++.+||=.|+|+ |..+..+++. |.+ |+++|.++.-++.+++..--.++..+.. ...+.... ....+|+|+-... 
T Consensus       120 ~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~-~~~~~~~~-~~~g~d~vid~~G-  196 (280)
T TIGR03366       120 KGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSFGATALAEPEVL-AERQGGLQ-NGRGVDVALEFSG-  196 (280)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCcEecCchhh-HHHHHHHh-CCCCCCEEEECCC-
Confidence            667888888875 6666667664 765 9999999998888887532122211110 01111111 2335899885322 


Q ss_pred             ccCChhHHHHHHHHhhcCCCeEEEEEec
Q 037961          110 HWFDLPQFYKQVKWVLKKPSGVIAAWTY  137 (262)
Q Consensus       110 ~~~d~~~~l~~~~r~Lk~pgG~l~i~~~  137 (262)
                          ....++++.+.|+ |+|+++++..
T Consensus       197 ----~~~~~~~~~~~l~-~~G~iv~~G~  219 (280)
T TIGR03366       197 ----ATAAVRACLESLD-VGGTAVLAGS  219 (280)
T ss_pred             ----ChHHHHHHHHHhc-CCCEEEEecc
Confidence                2457888999999 9999998663

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.

>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]

Probab=94.64  E-value=0.29  Score=39.21  Aligned_cols=116  Identities=18%  Similarity=0.198  Sum_probs=77.9

Q ss_pred             ChHHH--HHHHHhhCCCCCeEEEEcCcccHhHHHHHh----hC--CeEEEEcCCHHHHH-HHhcCCCceEEeCCCCchhh
Q 037961           19 YPKEL--FKLIASKTPKRNLAWDVGTRSGQAAASLAQ----IY--QHVIATDTSPKQLK-FAIKLPNIRYQLTPTMSITE   89 (262)
Q Consensus        19 yp~~~--~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~----~~--~~v~~vD~s~~~~~-~a~~~~~~~~~~~~~~~~~~   89 (262)
                      ||..+  ++.|+... +++.|+|.|.-.|..+..++.    .|  .+|+++|++-..++ .|++.+.+.+++++....+-
T Consensus        54 ~p~D~~~yQellw~~-~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e~p~i~f~egss~dpai  132 (237)
T COG3510          54 SPSDMWNYQELLWEL-QPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAAREVPDILFIEGSSTDPAI  132 (237)
T ss_pred             CHHHHHHHHHHHHhc-CCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhcCCCeEEEeCCCCCHHH
Confidence            46555  44455544 446779999999988888776    35  68999999987765 44557899999998222222


Q ss_pred             hhhcc-CCCCceeeEEEccccccC-ChhHHHHHHHHhhcCCCeEEEEEe
Q 037961           90 LEQNV-ATQSSVDLVTIASALHWF-DLPQFYKQVKWVLKKPSGVIAAWT  136 (262)
Q Consensus        90 ~~~~~-~~~~~~D~V~~~~~~~~~-d~~~~l~~~~r~Lk~pgG~l~i~~  136 (262)
                      +++.. ..++.--+-++--+-|.+ ..-+-++...++|. .|-.+++..
T Consensus       133 ~eqi~~~~~~y~kIfvilDsdHs~~hvLAel~~~~plls-aG~Y~vVeD  180 (237)
T COG3510         133 AEQIRRLKNEYPKIFVILDSDHSMEHVLAELKLLAPLLS-AGDYLVVED  180 (237)
T ss_pred             HHHHHHHhcCCCcEEEEecCCchHHHHHHHHHHhhhHhh-cCceEEEec
Confidence            23322 223333455566777777 55567788888888 788888854

>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]

Probab=94.63  E-value=0.2  Score=44.01  Aligned_cols=107  Identities=21%  Similarity=0.275  Sum_probs=68.2

Q ss_pred             CCCCeEEEEcCcccHhHHHHHhhCC------eEEEEcCCHHHHHHHhc----C--CCceEEeCC--CCchhhhhhc-cCC
Q 037961           32 PKRNLAWDVGTRSGQAAASLAQIYQ------HVIATDTSPKQLKFAIK----L--PNIRYQLTP--TMSITELEQN-VAT   96 (262)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~~~------~v~~vD~s~~~~~~a~~----~--~~~~~~~~~--~~~~~~~~~~-~~~   96 (262)
                      .++..|||..+-+|.=|.+|.+..+      .|++-|.++.-+.....    .  +++.+...+  .++.....++ +..
T Consensus       154 ~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~~v~~~~~~~~p~~~~~~~~~~~  233 (375)
T KOG2198|consen  154 KPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPNLLVTNHDASLFPNIYLKDGNDKE  233 (375)
T ss_pred             CCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCcceeeecccceeccccccccCchhh
Confidence            5889999999999999998887533      79999999887766543    2  333333333  1111100011 124


Q ss_pred             CCceeeEEEcccc-------------c--cC-C--------hhHHHHHHHHhhcCCCeEEEEEecCC
Q 037961           97 QSSVDLVTIASAL-------------H--WF-D--------LPQFYKQVKWVLKKPSGVIAAWTYTM  139 (262)
Q Consensus        97 ~~~~D~V~~~~~~-------------~--~~-d--------~~~~l~~~~r~Lk~pgG~l~i~~~~~  139 (262)
                      ...||-|++.-.+             .  |. .        .-..+....++|| +||+++-.+++-
T Consensus       234 ~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk-~GG~lVYSTCSL  299 (375)
T KOG2198|consen  234 QLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLK-VGGRLVYSTCSL  299 (375)
T ss_pred             hhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhc-CCCEEEEeccCC
Confidence            4568999873221             1  22 1        1226778899999 999999877763

>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine

Probab=94.62  E-value=0.13  Score=45.29  Aligned_cols=79  Identities=20%  Similarity=0.194  Sum_probs=42.5

Q ss_pred             CCCCCeEEEEcCcccHhHHHHHhh------------C------CeEEEEcCCHHHHHHHhc-C---------CCceEEeC
Q 037961           31 TPKRNLAWDVGTRSGQAAASLAQI------------Y------QHVIATDTSPKQLKFAIK-L---------PNIRYQLT   82 (262)
Q Consensus        31 ~~~~~~vlDvGcG~G~~~~~l~~~------------~------~~v~~vD~s~~~~~~a~~-~---------~~~~~~~~   82 (262)
                      .+..-+|+|+||.+|..|..+...            .      .+|+-.|+-..--...-+ .         ..--|..+
T Consensus        14 ~~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~g   93 (334)
T PF03492_consen   14 NPKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSG   93 (334)
T ss_dssp             TTTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEE
T ss_pred             CCCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEe
Confidence            356678999999999998876531            1      267777776544333221 1         11222221


Q ss_pred             CCCchhhhhhccCCCCceeeEEEccccccC
Q 037961           83 PTMSITELEQNVATQSSVDLVTIASALHWF  112 (262)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~D~V~~~~~~~~~  112 (262)
                      -   -+.+..--+|+++.|+++++.++||+
T Consensus        94 v---pgSFy~rLfP~~Svh~~~Ss~alHWL  120 (334)
T PF03492_consen   94 V---PGSFYGRLFPSNSVHFGHSSYALHWL  120 (334)
T ss_dssp             E---ES-TTS--S-TT-EEEEEEES-TTB-
T ss_pred             c---CchhhhccCCCCceEEEEEechhhhc
Confidence            1   03355555799999999999999999

Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.

>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional

Probab=94.61  E-value=0.52  Score=41.31  Aligned_cols=99  Identities=18%  Similarity=0.150  Sum_probs=61.7

Q ss_pred             CCCCeEEEEcCcc-cHhHHHHHhh-CCe-EEEEcCCHHHHHHHhcCCCceEEeCCCCchhhhhhccCCCCcee-eEEEcc
Q 037961           32 PKRNLAWDVGTRS-GQAAASLAQI-YQH-VIATDTSPKQLKFAIKLPNIRYQLTPTMSITELEQNVATQSSVD-LVTIAS  107 (262)
Q Consensus        32 ~~~~~vlDvGcG~-G~~~~~l~~~-~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D-~V~~~~  107 (262)
                      .++.+||=.|||+ |..+.++++. |.+ |++++.+++-++.+++..--.++..+......+... .....+| +|+-.-
T Consensus       159 ~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~-~~~~~~d~~v~d~~  237 (347)
T PRK10309        159 CEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKSLGAMQTFNSREMSAPQIQSV-LRELRFDQLILETA  237 (347)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCceEecCcccCHHHHHHH-hcCCCCCeEEEECC
Confidence            4677888888875 6677777764 776 789999999888887643222222221111112222 1234577 555321


Q ss_pred             ccccCChhHHHHHHHHhhcCCCeEEEEEec
Q 037961          108 ALHWFDLPQFYKQVKWVLKKPSGVIAAWTY  137 (262)
Q Consensus       108 ~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~  137 (262)
                           --...+.++.++|+ +||+++++..
T Consensus       238 -----G~~~~~~~~~~~l~-~~G~iv~~G~  261 (347)
T PRK10309        238 -----GVPQTVELAIEIAG-PRAQLALVGT  261 (347)
T ss_pred             -----CCHHHHHHHHHHhh-cCCEEEEEcc
Confidence                 22457889999999 9999998664

>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology

Probab=94.56  E-value=0.11  Score=44.38  Aligned_cols=68  Identities=15%  Similarity=0.013  Sum_probs=48.9

Q ss_pred             eEEEEcCcccHhHHHHHhhCCe-EEEEcCCHHHHHHHhcC-CCceEEeCCCCchhhhhhccCC--CCceeeEEEccccc
Q 037961           36 LAWDVGTRSGQAAASLAQIYQH-VIATDTSPKQLKFAIKL-PNIRYQLTPTMSITELEQNVAT--QSSVDLVTIASALH  110 (262)
Q Consensus        36 ~vlDvGcG~G~~~~~l~~~~~~-v~~vD~s~~~~~~a~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~D~V~~~~~~~  110 (262)
                      +++|+-||.|..+..+.+.|.+ +.++|+++..++..+.+ +.. ...+|      +.++...  .+.+|+|+....+.
T Consensus         2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~~~-~~~~D------i~~~~~~~~~~~~D~l~~gpPCq   73 (275)
T cd00315           2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFPNK-LIEGD------ITKIDEKDFIPDIDLLTGGFPCQ   73 (275)
T ss_pred             cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCCCC-CccCc------cccCchhhcCCCCCEEEeCCCCh
Confidence            5899999999999999888765 66899999999987764 333 34444      2222211  35699999876664

Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.

>KOG2920 consensus Predicted methyltransferase [General function prediction only]

Probab=94.46  E-value=0.025  Score=47.87  Aligned_cols=100  Identities=17%  Similarity=0.143  Sum_probs=59.5

Q ss_pred             CCCeEEEEcCcccHhHHHHHhhC-CeEEEEcCCHHHHHHHhcCCCceE--E----eCC-----CCchhhhhhcc-CCCC-
Q 037961           33 KRNLAWDVGTRSGQAAASLAQIY-QHVIATDTSPKQLKFAIKLPNIRY--Q----LTP-----TMSITELEQNV-ATQS-   98 (262)
Q Consensus        33 ~~~~vlDvGcG~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~~~~~~--~----~~~-----~~~~~~~~~~~-~~~~-   98 (262)
                      .+.+|||+|||+|.........+ ..+...|.+...++.-. .+++..  .    ..+     ........++. ...+ 
T Consensus       116 ~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~~~t-~pn~~~~~~~~~~~~e~~~~~~i~~s~l~dg~~~~t~~  194 (282)
T KOG2920|consen  116 SGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLRLVT-LPNILVNSHAGVEEKENHKVDEILNSLLSDGVFNHTER  194 (282)
T ss_pred             cCceeEecCCcccccchhhhhhccceeeeEecchhheeeec-ccceecchhhhhhhhhcccceeccccccccchhhhccc
Confidence            67889999999999988887777 68889999888774322 111111  0    000     00001000111 0122 


Q ss_pred             -ceeeEEEccccccCChhHHH--HHHHHhhcCCCeEEEE
Q 037961           99 -SVDLVTIASALHWFDLPQFY--KQVKWVLKKPSGVIAA  134 (262)
Q Consensus        99 -~~D~V~~~~~~~~~d~~~~l--~~~~r~Lk~pgG~l~i  134 (262)
                       .||+|.++..+.-.+..+.+  .....+++ ++|.+.+
T Consensus       195 ~~ydlIlsSetiy~~~~~~~~~~~~r~~l~~-~D~~~~~  232 (282)
T KOG2920|consen  195 THYDLILSSETIYSIDSLAVLYLLHRPCLLK-TDGVFYV  232 (282)
T ss_pred             cchhhhhhhhhhhCcchhhhhHhhhhhhcCC-ccchhhh
Confidence             78999988888877555533  34445556 7887765

>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=94.32  E-value=0.54  Score=38.03  Aligned_cols=116  Identities=21%  Similarity=0.241  Sum_probs=75.4

Q ss_pred             HHHhhCCCChHHHHHHHHhhC-----CCCCeEEEEcCcccHhHHHHHhh-C-CeEEEEcCCHHHHH----HHhcCCCceE
Q 037961           11 LYAVARPNYPKELFKLIASKT-----PKRNLAWDVGTRSGQAAASLAQI-Y-QHVIATDTSPKQLK----FAIKLPNIRY   79 (262)
Q Consensus        11 ~Y~~~rp~yp~~~~~~l~~~~-----~~~~~vlDvGcG~G~~~~~l~~~-~-~~v~~vD~s~~~~~----~a~~~~~~~~   79 (262)
                      .|..+.|.= .++...|++-+     +++..||=+|+.+|....+++.- + ..+.||+.|+.+..    .|++++|+--
T Consensus        50 eYR~Wnp~R-SKLaAaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R~Ni~P  128 (231)
T COG1889          50 EYREWNPRR-SKLAAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKRPNIIP  128 (231)
T ss_pred             ceeeeCcch-hHHHHHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhCCCcee
Confidence            355555533 55555555433     48899999999999999999875 3 46999999997765    4556777766


Q ss_pred             EeCC-CCchhhhhhccCCCCceeeEEEccccccCCh-hHHHHHHHHhhcCCCeEEEE
Q 037961           80 QLTP-TMSITELEQNVATQSSVDLVTIASALHWFDL-PQFYKQVKWVLKKPSGVIAA  134 (262)
Q Consensus        80 ~~~~-~~~~~~~~~~~~~~~~~D~V~~~~~~~~~d~-~~~l~~~~r~Lk~pgG~l~i  134 (262)
                      +.+| ..+    +....-=+.+|+|+..-+=.  +. +-+..++..-|| +||.+.+
T Consensus       129 IL~DA~~P----~~Y~~~Ve~VDviy~DVAQp--~Qa~I~~~Na~~FLk-~~G~~~i  178 (231)
T COG1889         129 ILEDARKP----EKYRHLVEKVDVIYQDVAQP--NQAEILADNAEFFLK-KGGYVVI  178 (231)
T ss_pred             eecccCCc----HHhhhhcccccEEEEecCCc--hHHHHHHHHHHHhcc-cCCeEEE
Confidence            6665 222    11111124589998643310  21 227778888999 8886554

>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes

Probab=94.23  E-value=0.053  Score=44.07  Aligned_cols=59  Identities=24%  Similarity=0.262  Sum_probs=37.3

Q ss_pred             hCCCChHHH----HHHHHhhCC--CCCeEEEEcCcccHhHHHHHh----hCCeEEEEcCCHHHHHHHhc
Q 037961           15 ARPNYPKEL----FKLIASKTP--KRNLAWDVGTRSGQAAASLAQ----IYQHVIATDTSPKQLKFAIK   73 (262)
Q Consensus        15 ~rp~yp~~~----~~~l~~~~~--~~~~vlDvGcG~G~~~~~l~~----~~~~v~~vD~s~~~~~~a~~   73 (262)
                      .-|.+|-.+    ++....+..  .+-++.|-.||.|.+.-.+.-    ....|+|.|+++++++.|++
T Consensus        27 G~p~FPVRLAsEi~qR~l~~l~~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~k   95 (246)
T PF11599_consen   27 GFPAFPVRLASEIFQRALHYLEGKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARK   95 (246)
T ss_dssp             TB----HHHHHHHHHHHHCTSSS-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHH
T ss_pred             CCCCccHHHHHHHHHHHHHhhcCCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHH
Confidence            346676544    444444443  446789999999987765532    35689999999999999986

This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.

>cd05278 FDH_like Formaldehyde dehydrogenases

Probab=94.17  E-value=0.67  Score=40.40  Aligned_cols=99  Identities=21%  Similarity=0.243  Sum_probs=61.8

Q ss_pred             CCCCCeEEEEcCcc-cHhHHHHHhh-CC-eEEEEcCCHHHHHHHhcCCCceEEeCCCCch-hhhhhccCCCCceeeEEEc
Q 037961           31 TPKRNLAWDVGTRS-GQAAASLAQI-YQ-HVIATDTSPKQLKFAIKLPNIRYQLTPTMSI-TELEQNVATQSSVDLVTIA  106 (262)
Q Consensus        31 ~~~~~~vlDvGcG~-G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~D~V~~~  106 (262)
                      .+++.+||-.|+|. |..+..+++. +. .+++++.++...+.+++.....++....... ..+... ...+.+|+|+-.
T Consensus       165 ~~~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~i~~~-~~~~~~d~vld~  243 (347)
T cd05278         165 IKPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKEAGATDIINPKNGDIVEQILEL-TGGRGVDCVIEA  243 (347)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHhCCcEEEcCCcchHHHHHHHH-cCCCCCcEEEEc
Confidence            34667788878763 7777777765 64 7899988888877777553222222221111 112222 134579999854


Q ss_pred             cccccCChhHHHHHHHHhhcCCCeEEEEEe
Q 037961          107 SALHWFDLPQFYKQVKWVLKKPSGVIAAWT  136 (262)
Q Consensus       107 ~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~  136 (262)
                      ..     ....+.++.+.|+ ++|+++.+.
T Consensus       244 ~g-----~~~~~~~~~~~l~-~~G~~v~~g  267 (347)
T cd05278         244 VG-----FEETFEQAVKVVR-PGGTIANVG  267 (347)
T ss_pred             cC-----CHHHHHHHHHHhh-cCCEEEEEc
Confidence            22     1257888999999 999988754

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=94.17  E-value=0.43  Score=43.21  Aligned_cols=100  Identities=15%  Similarity=0.034  Sum_probs=65.4

Q ss_pred             HHHHHHHhhC---CCCCeEEEEcCcc-cHhHHHHHh-hCCeEEEEcCCHHHHHHHhcCCCceEEeCCCCchhhhhhccCC
Q 037961           22 ELFKLIASKT---PKRNLAWDVGTRS-GQAAASLAQ-IYQHVIATDTSPKQLKFAIKLPNIRYQLTPTMSITELEQNVAT   96 (262)
Q Consensus        22 ~~~~~l~~~~---~~~~~vlDvGcG~-G~~~~~l~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~   96 (262)
                      ...+-+....   -++.+|+=+|||+ |......++ .|++|+++|+++.-++.|+.. ++.....     .++  .   
T Consensus       187 s~~~~i~r~t~~~l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~~-G~~~~~~-----~e~--v---  255 (413)
T cd00401         187 SLIDGIKRATDVMIAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAME-GYEVMTM-----EEA--V---  255 (413)
T ss_pred             hhHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHhc-CCEEccH-----HHH--H---
Confidence            3344444443   3688999999997 666655554 588999999999888888764 3322211     111  1   


Q ss_pred             CCceeeEEEccccccCChhHHHHH-HHHhhcCCCeEEEEEecCC
Q 037961           97 QSSVDLVTIASALHWFDLPQFYKQ-VKWVLKKPSGVIAAWTYTM  139 (262)
Q Consensus        97 ~~~~D~V~~~~~~~~~d~~~~l~~-~~r~Lk~pgG~l~i~~~~~  139 (262)
                       ..+|+|+....     ...++.. ..+.+| +||+++.....+
T Consensus       256 -~~aDVVI~atG-----~~~~i~~~~l~~mk-~GgilvnvG~~~  292 (413)
T cd00401         256 -KEGDIFVTTTG-----NKDIITGEHFEQMK-DGAIVCNIGHFD  292 (413)
T ss_pred             -cCCCEEEECCC-----CHHHHHHHHHhcCC-CCcEEEEeCCCC
Confidence             24799986533     2345554 489999 999998866543

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>COG4301 Uncharacterized conserved protein [Function unknown]

Probab=94.16  E-value=0.65  Score=38.80  Aligned_cols=96  Identities=14%  Similarity=0.193  Sum_probs=65.1

Q ss_pred             CCCeEEEEcCcccHhHHHHHhh------CCeEEEEcCCHHHHHHH-h----cCCCceE--EeCC-CCchhhhhhccCCCC
Q 037961           33 KRNLAWDVGTRSGQAAASLAQI------YQHVIATDTSPKQLKFA-I----KLPNIRY--QLTP-TMSITELEQNVATQS   98 (262)
Q Consensus        33 ~~~~vlDvGcG~G~~~~~l~~~------~~~v~~vD~s~~~~~~a-~----~~~~~~~--~~~~-~~~~~~~~~~~~~~~   98 (262)
                      .....+|+|+|+..=|+.|...      ..+++.+|+|...++.. +    +++.+++  +.++ +..+   ..+  +.+
T Consensus        78 g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~L---a~~--~~~  152 (321)
T COG4301          78 GACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELAL---AEL--PRG  152 (321)
T ss_pred             CcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHH---hcc--cCC
Confidence            4677899999999988887653      24799999999998743 3    3465554  3343 2221   112  233


Q ss_pred             cee-eEEEccccccCChh---HHHHHHHHhhcCCCeEEEE
Q 037961           99 SVD-LVTIASALHWFDLP---QFYKQVKWVLKKPSGVIAA  134 (262)
Q Consensus        99 ~~D-~V~~~~~~~~~d~~---~~l~~~~r~Lk~pgG~l~i  134 (262)
                      +-- +++...++.-+.|.   .++..+..+|+ ||-++.+
T Consensus       153 ~~Rl~~flGStlGN~tp~e~~~Fl~~l~~a~~-pGd~~Ll  191 (321)
T COG4301         153 GRRLFVFLGSTLGNLTPGECAVFLTQLRGALR-PGDYFLL  191 (321)
T ss_pred             CeEEEEEecccccCCChHHHHHHHHHHHhcCC-CcceEEE
Confidence            333 34466777777444   48999999999 9999988

>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases

Probab=94.16  E-value=1.1  Score=38.97  Aligned_cols=100  Identities=19%  Similarity=0.157  Sum_probs=63.6

Q ss_pred             CCCCCeEEEEcCcc-cHhHHHHHhh-CCe-EEEEcCCHHHHHHHhcCCCceEEeCCCCchhhhhhccCCCCceeeEEEcc
Q 037961           31 TPKRNLAWDVGTRS-GQAAASLAQI-YQH-VIATDTSPKQLKFAIKLPNIRYQLTPTMSITELEQNVATQSSVDLVTIAS  107 (262)
Q Consensus        31 ~~~~~~vlDvGcG~-G~~~~~l~~~-~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~  107 (262)
                      ..++..||-.|+|. |..+..+++. |.+ +++++.++...+.+++.....++.........+.... ....+|+|+.. 
T Consensus       157 ~~~~~~vlI~g~g~~g~~~~~lA~~~G~~~v~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~-~~~~~d~vld~-  234 (343)
T cd08236         157 ITLGDTVVVIGAGTIGLLAIQWLKILGAKRVIAVDIDDEKLAVARELGADDTINPKEEDVEKVRELT-EGRGADLVIEA-  234 (343)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCCEEecCccccHHHHHHHh-CCCCCCEEEEC-
Confidence            34667788888765 6677777764 776 9999999988887765422222222211112222221 33459999854 


Q ss_pred             ccccCChhHHHHHHHHhhcCCCeEEEEEec
Q 037961          108 ALHWFDLPQFYKQVKWVLKKPSGVIAAWTY  137 (262)
Q Consensus       108 ~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~  137 (262)
                          ......+..+.+.|+ ++|+++.+..
T Consensus       235 ----~g~~~~~~~~~~~l~-~~G~~v~~g~  259 (343)
T cd08236         235 ----AGSPATIEQALALAR-PGGKVVLVGI  259 (343)
T ss_pred             ----CCCHHHHHHHHHHhh-cCCEEEEEcc
Confidence                223457889999999 9999887653

This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast

>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) []

Probab=94.10  E-value=0.048  Score=39.28  Aligned_cols=32  Identities=19%  Similarity=-0.017  Sum_probs=27.5

Q ss_pred             CCCeEEEEcCcccHhHHHHHhhCCeEEEEcCC
Q 037961           33 KRNLAWDVGTRSGQAAASLAQIYQHVIATDTS   64 (262)
Q Consensus        33 ~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s   64 (262)
                      +....+|+|||+|.+.--|.+.|..=.|+|.-
T Consensus        58 ~~~~FVDlGCGNGLLV~IL~~EGy~G~GiD~R   89 (112)
T PF07757_consen   58 KFQGFVDLGCGNGLLVYILNSEGYPGWGIDAR   89 (112)
T ss_pred             CCCceEEccCCchHHHHHHHhCCCCccccccc
Confidence            45668999999999999999889888888873

; GO: 0008168 methyltransferase activity

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=94.10  E-value=0.24  Score=45.97  Aligned_cols=99  Identities=19%  Similarity=0.139  Sum_probs=65.6

Q ss_pred             CCCeEEEEcCcc-cHhHHHHHh-hCCeEEEEcCCHHHHHHHhcCCCceEEeCC-C------------Cchhhhh-----h
Q 037961           33 KRNLAWDVGTRS-GQAAASLAQ-IYQHVIATDTSPKQLKFAIKLPNIRYQLTP-T------------MSITELE-----Q   92 (262)
Q Consensus        33 ~~~~vlDvGcG~-G~~~~~l~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~-~------------~~~~~~~-----~   92 (262)
                      ++.+|+=+|||. |..+..++. .|+.|+++|.++.-++.++.. ...++.-+ .            .+ .+..     .
T Consensus       163 p~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~l-Ga~~v~v~~~e~g~~~~gYa~~~s-~~~~~~~~~~  240 (511)
T TIGR00561       163 PPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSM-GAEFLELDFKEEGGSGDGYAKVMS-EEFIAAEMEL  240 (511)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc-CCeEEeccccccccccccceeecC-HHHHHHHHHH
Confidence            467899999997 677776666 488999999999999888875 23332211 0            00 0000     0


Q ss_pred             ccCCCCceeeEEEccccccC-ChhHHHHHHHHhhcCCCeEEEE
Q 037961           93 NVATQSSVDLVTIASALHWF-DLPQFYKQVKWVLKKPSGVIAA  134 (262)
Q Consensus        93 ~~~~~~~~D~V~~~~~~~~~-d~~~~l~~~~r~Lk~pgG~l~i  134 (262)
                      ++-.-..+|+|+..-.+..- .|.-..+++.+.+| ||++++=
T Consensus       241 ~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MK-pGsvIVD  282 (511)
T TIGR00561       241 FAAQAKEVDIIITTALIPGKPAPKLITEEMVDSMK-AGSVIVD  282 (511)
T ss_pred             HHHHhCCCCEEEECcccCCCCCCeeehHHHHhhCC-CCCEEEE
Confidence            11113469999876655554 44447888999999 9999873

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family

Probab=93.98  E-value=0.83  Score=39.75  Aligned_cols=99  Identities=17%  Similarity=0.168  Sum_probs=64.0

Q ss_pred             CCCCCeEEEEcCcc-cHhHHHHHhh-CCeEEEEcCCHHHHHHHhcCCCceEEeCCCCch-hhhhhccCCCCceeeEEEcc
Q 037961           31 TPKRNLAWDVGTRS-GQAAASLAQI-YQHVIATDTSPKQLKFAIKLPNIRYQLTPTMSI-TELEQNVATQSSVDLVTIAS  107 (262)
Q Consensus        31 ~~~~~~vlDvGcG~-G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~D~V~~~~  107 (262)
                      ..++..||-.|+|. |..+..+++. |.+++++..+++..+.+++...-.++....... ..+... .+...+|+|+...
T Consensus       157 l~~g~~vLI~g~g~vG~~a~~lA~~~g~~v~~~~~s~~~~~~~~~~g~~~v~~~~~~~~~~~l~~~-~~~~~vd~vld~~  235 (337)
T cd08261         157 VTAGDTVLVVGAGPIGLGVIQVAKARGARVIVVDIDDERLEFARELGADDTINVGDEDVAARLREL-TDGEGADVVIDAT  235 (337)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHhCCCEEecCcccCHHHHHHHH-hCCCCCCEEEECC
Confidence            35677888888774 7777777775 889999999999888776543222222211111 112222 2345689998542


Q ss_pred             ccccCChhHHHHHHHHhhcCCCeEEEEEe
Q 037961          108 ALHWFDLPQFYKQVKWVLKKPSGVIAAWT  136 (262)
Q Consensus       108 ~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~  136 (262)
                      .     -...+.++.+.|+ ++|+++.+.
T Consensus       236 g-----~~~~~~~~~~~l~-~~G~~i~~g  258 (337)
T cd08261         236 G-----NPASMEEAVELVA-HGGRVVLVG  258 (337)
T ss_pred             C-----CHHHHHHHHHHHh-cCCEEEEEc
Confidence            1     2456889999999 999988754

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,

>PLN02586 probable cinnamyl alcohol dehydrogenase

Probab=93.93  E-value=0.46  Score=42.13  Aligned_cols=95  Identities=13%  Similarity=0.089  Sum_probs=58.2

Q ss_pred             CCCCeEEEEcCcc-cHhHHHHHhh-CCeEEEEcCCHHHHH-HHhcCCCceEEeCCCCchhhhhhccCCCCceeeEEEccc
Q 037961           32 PKRNLAWDVGTRS-GQAAASLAQI-YQHVIATDTSPKQLK-FAIKLPNIRYQLTPTMSITELEQNVATQSSVDLVTIASA  108 (262)
Q Consensus        32 ~~~~~vlDvGcG~-G~~~~~l~~~-~~~v~~vD~s~~~~~-~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~  108 (262)
                      .++.+||=.|+|. |.++.++++. |.++++++.++.... .+++. +........ ....+...   .+.+|+|+-...
T Consensus       182 ~~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~~~~~~~~~~~-Ga~~vi~~~-~~~~~~~~---~~~~D~vid~~g  256 (360)
T PLN02586        182 EPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSSNKEDEAINRL-GADSFLVST-DPEKMKAA---IGTMDYIIDTVS  256 (360)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcchhhhHHHhC-CCcEEEcCC-CHHHHHhh---cCCCCEEEECCC
Confidence            4667777799875 7777777764 888998888766543 33443 232222110 00112222   124898884332


Q ss_pred             cccCChhHHHHHHHHhhcCCCeEEEEEec
Q 037961          109 LHWFDLPQFYKQVKWVLKKPSGVIAAWTY  137 (262)
Q Consensus       109 ~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~  137 (262)
                           ....++++.+.|+ +||+++.+..
T Consensus       257 -----~~~~~~~~~~~l~-~~G~iv~vG~  279 (360)
T PLN02586        257 -----AVHALGPLLGLLK-VNGKLITLGL  279 (360)
T ss_pred             -----CHHHHHHHHHHhc-CCcEEEEeCC
Confidence                 2346788999999 9999997653

>PLN03154 putative allyl alcohol dehydrogenase; Provisional

Probab=93.74  E-value=1.2  Score=39.36  Aligned_cols=98  Identities=15%  Similarity=0.105  Sum_probs=64.1

Q ss_pred             CCCCCeEEEEcC-c-ccHhHHHHHhh-CCeEEEEcCCHHHHHHHh-cCCCceEEeCC-CCch-hhhhhccCCCCceeeEE
Q 037961           31 TPKRNLAWDVGT-R-SGQAAASLAQI-YQHVIATDTSPKQLKFAI-KLPNIRYQLTP-TMSI-TELEQNVATQSSVDLVT  104 (262)
Q Consensus        31 ~~~~~~vlDvGc-G-~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~-~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~D~V~  104 (262)
                      ..++.+||=.|+ | .|.++.++++. |.+|++++.++.-++.++ +..--.++... .-.. ..+...  ..+.+|+|+
T Consensus       156 ~~~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~k~~~~~~~lGa~~vi~~~~~~~~~~~i~~~--~~~gvD~v~  233 (348)
T PLN03154        156 PKKGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKVDLLKNKLGFDEAFNYKEEPDLDAALKRY--FPEGIDIYF  233 (348)
T ss_pred             CCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhcCCCEEEECCCcccHHHHHHHH--CCCCcEEEE
Confidence            357788888888 3 58888888775 889999999998888776 34221222211 1011 112222  124689998


Q ss_pred             EccccccCChhHHHHHHHHhhcCCCeEEEEEec
Q 037961          105 IASALHWFDLPQFYKQVKWVLKKPSGVIAAWTY  137 (262)
Q Consensus       105 ~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~  137 (262)
                      -...      ...+..+.+.|+ +||+++++..
T Consensus       234 d~vG------~~~~~~~~~~l~-~~G~iv~~G~  259 (348)
T PLN03154        234 DNVG------GDMLDAALLNMK-IHGRIAVCGM  259 (348)
T ss_pred             ECCC------HHHHHHHHHHhc-cCCEEEEECc
Confidence            5433      247788999999 9999998654

>PLN02740 Alcohol dehydrogenase-like

Probab=93.67  E-value=0.95  Score=40.41  Aligned_cols=99  Identities=12%  Similarity=0.109  Sum_probs=63.8

Q ss_pred             CCCCCeEEEEcCcc-cHhHHHHHhh-CC-eEEEEcCCHHHHHHHhcCCCceEEeCCCC--ch-hhhhhccCCCCceeeEE
Q 037961           31 TPKRNLAWDVGTRS-GQAAASLAQI-YQ-HVIATDTSPKQLKFAIKLPNIRYQLTPTM--SI-TELEQNVATQSSVDLVT  104 (262)
Q Consensus        31 ~~~~~~vlDvGcG~-G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~D~V~  104 (262)
                      .+++.+||=.|||+ |..+.++++. |. +|+++|.+++-++.+++..--.++.....  .. ..+..+  ..+.+|+|+
T Consensus       196 ~~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~v~~~--~~~g~dvvi  273 (381)
T PLN02740        196 VQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKEMGITDFINPKDSDKPVHERIREM--TGGGVDYSF  273 (381)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHcCCcEEEecccccchHHHHHHHH--hCCCCCEEE
Confidence            35778889999875 6777777764 76 69999999999999987532222221110  01 112222  223699998


Q ss_pred             EccccccCChhHHHHHHHHhhcCCC-eEEEEEec
Q 037961          105 IASALHWFDLPQFYKQVKWVLKKPS-GVIAAWTY  137 (262)
Q Consensus       105 ~~~~~~~~d~~~~l~~~~r~Lk~pg-G~l~i~~~  137 (262)
                      -...     ....+..+.+.++ +| |++++...
T Consensus       274 d~~G-----~~~~~~~a~~~~~-~g~G~~v~~G~  301 (381)
T PLN02740        274 ECAG-----NVEVLREAFLSTH-DGWGLTVLLGI  301 (381)
T ss_pred             ECCC-----ChHHHHHHHHhhh-cCCCEEEEEcc
Confidence            5433     2357788888998 86 99887554

>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]

Probab=93.61  E-value=0.094  Score=47.07  Aligned_cols=49  Identities=18%  Similarity=0.171  Sum_probs=40.4

Q ss_pred             CeEEEEcCcccHhHHHHHhhCC-eEEEEcCCHHHHHHHhcC-------CCceEEeCC
Q 037961           35 NLAWDVGTRSGQAAASLAQIYQ-HVIATDTSPKQLKFAIKL-------PNIRYQLTP   83 (262)
Q Consensus        35 ~~vlDvGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~-------~~~~~~~~~   83 (262)
                      ..|||+|.|||.++...++.|+ .|++++.=..|.+.|++.       .+|+++...
T Consensus        68 v~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkr  124 (636)
T KOG1501|consen   68 VFVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNGMSDKINVINKR  124 (636)
T ss_pred             EEEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCCCccceeeeccc
Confidence            4689999999999999888865 699999999999999862       466666543

>KOG1227 consensus Putative methyltransferase [General function prediction only]

Probab=93.55  E-value=0.062  Score=45.83  Aligned_cols=103  Identities=13%  Similarity=0.106  Sum_probs=64.4

Q ss_pred             HHhhCCCCCeEEEEcCcccHhHH-HHHhhCC-eEEEEcCCHHHHHHHhcCCCceEEeCC-CCchhhhhhccCCCCceeeE
Q 037961           27 IASKTPKRNLAWDVGTRSGQAAA-SLAQIYQ-HVIATDTSPKQLKFAIKLPNIRYQLTP-TMSITELEQNVATQSSVDLV  103 (262)
Q Consensus        27 l~~~~~~~~~vlDvGcG~G~~~~-~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~D~V  103 (262)
                      +.+....+..|+|+=+|-|.+|. .+...++ .|+++|.+|..++..++...++.+... ....+| ...+-++...|.|
T Consensus       188 v~~~sc~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd-~R~~~~~~~AdrV  266 (351)
T KOG1227|consen  188 VLNTSCDGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGD-NRNPKPRLRADRV  266 (351)
T ss_pred             hhhcccccchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhcc-ccccCccccchhe
Confidence            33334466889999999999999 6666665 689999999999998864333222111 111111 2233356777877


Q ss_pred             EEccccccC-ChhHHHHHHHHhhcCCCe-EEEE
Q 037961          104 TIASALHWF-DLPQFYKQVKWVLKKPSG-VIAA  134 (262)
Q Consensus       104 ~~~~~~~~~-d~~~~l~~~~r~Lk~pgG-~l~i  134 (262)
                      .-..    + .-++-+--+-++||+.|| ++-|
T Consensus       267 nLGL----lPSse~~W~~A~k~Lk~eggsilHI  295 (351)
T KOG1227|consen  267 NLGL----LPSSEQGWPTAIKALKPEGGSILHI  295 (351)
T ss_pred             eecc----ccccccchHHHHHHhhhcCCcEEEE
Confidence            6432    2 334555667788884566 4444

>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase

Probab=93.52  E-value=1.3  Score=38.38  Aligned_cols=98  Identities=17%  Similarity=0.086  Sum_probs=63.2

Q ss_pred             CCCCCeEEEEcC--cccHhHHHHHhh-CCeEEEEcCCHHHHHHHhcCCCceEEeCCC-Cchhh-hhhccCCCCceeeEEE
Q 037961           31 TPKRNLAWDVGT--RSGQAAASLAQI-YQHVIATDTSPKQLKFAIKLPNIRYQLTPT-MSITE-LEQNVATQSSVDLVTI  105 (262)
Q Consensus        31 ~~~~~~vlDvGc--G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~D~V~~  105 (262)
                      ..++.+||=.|+  |.|..+.++++. |.+|++++.+++..+.+++..--.++..+. -...+ ....  ..+.+|+|+-
T Consensus       136 ~~~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~--~~~gvdvv~d  213 (325)
T TIGR02825       136 VKGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKVAYLKKLGFDVAFNYKTVKSLEETLKKA--SPDGYDCYFD  213 (325)
T ss_pred             CCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCEEEeccccccHHHHHHHh--CCCCeEEEEE
Confidence            357788888884  357888888775 889999999999888887653222222211 01111 1112  2346999985


Q ss_pred             ccccccCChhHHHHHHHHhhcCCCeEEEEEec
Q 037961          106 ASALHWFDLPQFYKQVKWVLKKPSGVIAAWTY  137 (262)
Q Consensus       106 ~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~  137 (262)
                      ...      ...+..+.+.|+ +||+++.+..
T Consensus       214 ~~G------~~~~~~~~~~l~-~~G~iv~~G~  238 (325)
T TIGR02825       214 NVG------GEFSNTVIGQMK-KFGRIAICGA  238 (325)
T ss_pred             CCC------HHHHHHHHHHhC-cCcEEEEecc
Confidence            322      235688899999 9999998653

Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.

>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown

Probab=93.46  E-value=0.45  Score=35.41  Aligned_cols=101  Identities=18%  Similarity=0.149  Sum_probs=51.1

Q ss_pred             HHHHHHHhhCCCCCeEEEEcCcc-cHhHHHHHhhCCeEEEEcCCHHHHHHHhcCCCceEEeCCCCchhhhhhccCCCCce
Q 037961           22 ELFKLIASKTPKRNLAWDVGTRS-GQAAASLAQIYQHVIATDTSPKQLKFAIKLPNIRYQLTPTMSITELEQNVATQSSV  100 (262)
Q Consensus        22 ~~~~~l~~~~~~~~~vlDvGcG~-G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (262)
                      ++.+.+...... .+++|||-|. -..+..|.++|.+|+++|+.+.   .+.  .++.+...|.++ .+.+-    -...
T Consensus         3 ~~a~~ia~~~~~-~kiVEVGiG~~~~vA~~L~~~G~dV~~tDi~~~---~a~--~g~~~v~DDif~-P~l~i----Y~~a   71 (127)
T PF03686_consen    3 DFAEYIARLNNY-GKIVEVGIGFNPEVAKKLKERGFDVIATDINPR---KAP--EGVNFVVDDIFN-PNLEI----YEGA   71 (127)
T ss_dssp             HHHHHHHHHS-S-SEEEEET-TT--HHHHHHHHHS-EEEEE-SS-S---------STTEE---SSS---HHH----HTTE
T ss_pred             hHHHHHHHhCCC-CcEEEECcCCCHHHHHHHHHcCCcEEEEECccc---ccc--cCcceeeecccC-CCHHH----hcCC
Confidence            345556654444 4899999997 4567778888999999999988   222  578888776221 11110    2357


Q ss_pred             eeEEEccccccCChhHHHHHHHHhhcCCCeEEEEEecC
Q 037961          101 DLVTIASALHWFDLPQFYKQVKWVLKKPSGVIAAWTYT  138 (262)
Q Consensus       101 D~V~~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~~  138 (262)
                      |+|.|...=  .+....+-++++-+   |.-+++...+
T Consensus        72 ~lIYSiRPP--~El~~~il~lA~~v---~adlii~pL~  104 (127)
T PF03686_consen   72 DLIYSIRPP--PELQPPILELAKKV---GADLIIRPLG  104 (127)
T ss_dssp             EEEEEES----TTSHHHHHHHHHHH---T-EEEEE-BT
T ss_pred             cEEEEeCCC--hHHhHHHHHHHHHh---CCCEEEECCC
Confidence            899875331  13333444444443   4566664444

; PDB: 2K4M_A.

>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent

Probab=93.45  E-value=1.3  Score=39.87  Aligned_cols=103  Identities=19%  Similarity=0.148  Sum_probs=63.8

Q ss_pred             CCCCeEEEEcCcc-cHhHHHHHhh-CCe-EEEEcCCHHHHHHHhcCCCceEEeCC-CCch-hhhhhccCCCCceeeEEEc
Q 037961           32 PKRNLAWDVGTRS-GQAAASLAQI-YQH-VIATDTSPKQLKFAIKLPNIRYQLTP-TMSI-TELEQNVATQSSVDLVTIA  106 (262)
Q Consensus        32 ~~~~~vlDvGcG~-G~~~~~l~~~-~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~D~V~~~  106 (262)
                      .++.+||=.|+|+ |..+..+++. |.+ ++++|.++.-++.+++.. +..+... .-.. ..+..+. ....+|+|+-.
T Consensus       184 ~~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~~~a~~~G-a~~v~~~~~~~~~~~v~~~~-~~~g~Dvvid~  261 (393)
T TIGR02819       184 GPGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARLAQARSFG-CETVDLSKDATLPEQIEQIL-GEPEVDCAVDC  261 (393)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHcC-CeEEecCCcccHHHHHHHHc-CCCCCcEEEEC
Confidence            4566666688875 6777777764 665 667799988888888763 3332221 1011 1122221 23468999854


Q ss_pred             ccccc-------C--ChhHHHHHHHHhhcCCCeEEEEEec
Q 037961          107 SALHW-------F--DLPQFYKQVKWVLKKPSGVIAAWTY  137 (262)
Q Consensus       107 ~~~~~-------~--d~~~~l~~~~r~Lk~pgG~l~i~~~  137 (262)
                      .....       .  +....++++.++++ +||++++...
T Consensus       262 ~G~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~G~i~~~G~  300 (393)
T TIGR02819       262 VGFEARGHGHDGKKEAPATVLNSLMEVTR-VGGAIGIPGL  300 (393)
T ss_pred             CCCccccccccccccchHHHHHHHHHHhh-CCCEEEEeee
Confidence            44321       1  23358999999999 9999998665

Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.

>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]

Probab=93.42  E-value=0.63  Score=39.98  Aligned_cols=90  Identities=14%  Similarity=0.189  Sum_probs=61.8

Q ss_pred             CCCChHHHHHHHHhhCCCCCeEEEEcCcccHhHHHHHhhC---CeEEEEcCCHHHHHHHhcC-----CCceEEeCCCCch
Q 037961           16 RPNYPKELFKLIASKTPKRNLAWDVGTRSGQAAASLAQIY---QHVIATDTSPKQLKFAIKL-----PNIRYQLTPTMSI   87 (262)
Q Consensus        16 rp~yp~~~~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~-----~~~~~~~~~~~~~   87 (262)
                      -|....+.++.|..  .++...+|.--|.|..+..+.+.+   .+++|+|.++.+++.|++.     .++.++.+.   +
T Consensus         8 ipVLl~E~i~~L~~--~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~~r~~~v~~~---F   82 (314)
T COG0275           8 IPVLLNEVVELLAP--KPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFDGRVTLVHGN---F   82 (314)
T ss_pred             cchHHHHHHHhccc--CCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccCCcEEEEeCc---H
Confidence            34444555554432  366888999999999999999874   5799999999999999863     477777765   1


Q ss_pred             hhhhhc--cCCCCceeeEEEccccc
Q 037961           88 TELEQN--VATQSSVDLVTIASALH  110 (262)
Q Consensus        88 ~~~~~~--~~~~~~~D~V~~~~~~~  110 (262)
                      .++...  ...-+++|-|+...++-
T Consensus        83 ~~l~~~l~~~~i~~vDGiL~DLGVS  107 (314)
T COG0275          83 ANLAEALKELGIGKVDGILLDLGVS  107 (314)
T ss_pred             HHHHHHHHhcCCCceeEEEEeccCC
Confidence            122111  12346788888754443

>cd08234 threonine_DH_like L-threonine dehydrogenase

Probab=93.36  E-value=1.3  Score=38.36  Aligned_cols=99  Identities=15%  Similarity=0.142  Sum_probs=62.8

Q ss_pred             CCCCeEEEEcCcc-cHhHHHHHhh-CCe-EEEEcCCHHHHHHHhcCCCceEEeCCCCchhhhhhccCCCCceeeEEEccc
Q 037961           32 PKRNLAWDVGTRS-GQAAASLAQI-YQH-VIATDTSPKQLKFAIKLPNIRYQLTPTMSITELEQNVATQSSVDLVTIASA  108 (262)
Q Consensus        32 ~~~~~vlDvGcG~-G~~~~~l~~~-~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~  108 (262)
                      .++.+||-.|+|. |..+..+++. |.+ +++++.+++..+.+++..--..+..+....... . ......+|+|+....
T Consensus       158 ~~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~-~~~~~~vd~v~~~~~  235 (334)
T cd08234         158 KPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKKLGATETVDPSREDPEAQ-K-EDNPYGFDVVIEATG  235 (334)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCeEEecCCCCCHHHH-H-HhcCCCCcEEEECCC
Confidence            4677888888763 6666666664 666 899999999988876542212222221111111 1 123456999985422


Q ss_pred             cccCChhHHHHHHHHhhcCCCeEEEEEecC
Q 037961          109 LHWFDLPQFYKQVKWVLKKPSGVIAAWTYT  138 (262)
Q Consensus       109 ~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~~  138 (262)
                           ....+.++.+.|+ ++|+++.+...
T Consensus       236 -----~~~~~~~~~~~l~-~~G~~v~~g~~  259 (334)
T cd08234         236 -----VPKTLEQAIEYAR-RGGTVLVFGVY  259 (334)
T ss_pred             -----ChHHHHHHHHHHh-cCCEEEEEecC
Confidence                 2467888999999 99999876543

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.

>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases

Probab=93.09  E-value=1.5  Score=38.40  Aligned_cols=98  Identities=20%  Similarity=0.207  Sum_probs=62.1

Q ss_pred             CCCCeEEEEcCcc-cHhHHHHHhh-CC-eEEEEcCCHHHHHHHhcCCCceEEeCCCCch-hhhhhccCCCCceeeEEEcc
Q 037961           32 PKRNLAWDVGTRS-GQAAASLAQI-YQ-HVIATDTSPKQLKFAIKLPNIRYQLTPTMSI-TELEQNVATQSSVDLVTIAS  107 (262)
Q Consensus        32 ~~~~~vlDvGcG~-G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~D~V~~~~  107 (262)
                      +++.+||=.|+|. |..+..+++. |. .++++|.++...+.+++..--.++....... ..+..+. ....+|+|+-..
T Consensus       165 ~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~i~~~~-~~~~~d~vld~~  243 (351)
T cd08285         165 KLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKEYGATDIVDYKNGDVVEQILKLT-GGKGVDAVIIAG  243 (351)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCceEecCCCCCHHHHHHHHh-CCCCCcEEEECC
Confidence            5677888888773 6666777764 66 5999999998888887653222222211111 1122221 334699998532


Q ss_pred             ccccCChhHHHHHHHHhhcCCCeEEEEEe
Q 037961          108 ALHWFDLPQFYKQVKWVLKKPSGVIAAWT  136 (262)
Q Consensus       108 ~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~  136 (262)
                      .     ....+.++.+.|+ ++|+++.+.
T Consensus       244 g-----~~~~~~~~~~~l~-~~G~~v~~g  266 (351)
T cd08285         244 G-----GQDTFEQALKVLK-PGGTISNVN  266 (351)
T ss_pred             C-----CHHHHHHHHHHhh-cCCEEEEec
Confidence            2     2357889999999 999998754

This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase

Probab=93.01  E-value=1.3  Score=38.94  Aligned_cols=100  Identities=17%  Similarity=0.126  Sum_probs=61.7

Q ss_pred             CCCCeEEEEcCcc-cHhHHHHHhh-CCeEEEEcCCHHHHHHHhcCCCceEEeCCCCchhhh----hhccCCCCcee----
Q 037961           32 PKRNLAWDVGTRS-GQAAASLAQI-YQHVIATDTSPKQLKFAIKLPNIRYQLTPTMSITEL----EQNVATQSSVD----  101 (262)
Q Consensus        32 ~~~~~vlDvGcG~-G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~D----  101 (262)
                      .++.+||=.|||+ |..+..+++. |.+|+++|.+++.++.+++..--.++........++    ..+. ....+|    
T Consensus       165 ~~g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~t-~~~g~d~~~d  243 (349)
T TIGR03201       165 KKGDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDPEKLEMMKGFGADLTLNPKDKSAREVKKLIKAFA-KARGLRSTGW  243 (349)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhCCceEecCccccHHHHHHHHHhhc-ccCCCCCCcC
Confidence            5678899999976 7777777764 789999999999999887653211221111100111    1111 112344    


Q ss_pred             eEEEccccccCChhHHHHHHHHhhcCCCeEEEEEecC
Q 037961          102 LVTIASALHWFDLPQFYKQVKWVLKKPSGVIAAWTYT  138 (262)
Q Consensus       102 ~V~~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~~  138 (262)
                      +|+-..     .....++.+.++|+ +||+++++...
T Consensus       244 ~v~d~~-----g~~~~~~~~~~~l~-~~G~iv~~G~~  274 (349)
T TIGR03201       244 KIFECS-----GSKPGQESALSLLS-HGGTLVVVGYT  274 (349)
T ss_pred             EEEECC-----CChHHHHHHHHHHh-cCCeEEEECcC
Confidence            555211     22457788899999 99999986643

Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.

>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]

Probab=92.86  E-value=0.16  Score=47.38  Aligned_cols=98  Identities=18%  Similarity=0.172  Sum_probs=60.8

Q ss_pred             hCCCCCeEEEEcCcccHhHHHHHhh---CCeEEEEcCCHHHHHHHhcCCCceEEeCC-C-Cch-hhhhhccCCCCceeeE
Q 037961           30 KTPKRNLAWDVGTRSGQAAASLAQI---YQHVIATDTSPKQLKFAIKLPNIRYQLTP-T-MSI-TELEQNVATQSSVDLV  103 (262)
Q Consensus        30 ~~~~~~~vlDvGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~~~~~~~~-~-~~~-~~~~~~~~~~~~~D~V  103 (262)
                      .+.+...|||+||.+|.+.+..++.   +.-|+|+|+-|-     +-.+++...+.+ + -.+ ..+... +...+.|+|
T Consensus        41 fl~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pi-----kp~~~c~t~v~dIttd~cr~~l~k~-l~t~~advV  114 (780)
T KOG1098|consen   41 FLEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPI-----KPIPNCDTLVEDITTDECRSKLRKI-LKTWKADVV  114 (780)
T ss_pred             cccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeec-----ccCCccchhhhhhhHHHHHHHHHHH-HHhCCCcEE
Confidence            3468889999999999998877664   677999999764     334555555444 1 000 000000 233456998


Q ss_pred             EEccc----cccC-Chh-------HHHHHHHHhhcCCCeEEEE
Q 037961          104 TIASA----LHWF-DLP-------QFYKQVKWVLKKPSGVIAA  134 (262)
Q Consensus       104 ~~~~~----~~~~-d~~-------~~l~~~~r~Lk~pgG~l~i  134 (262)
                      +...+    ..|. |.-       .++.-+...|. -||+|+-
T Consensus       115 LhDgapnVg~~w~~DA~~q~~L~l~al~LA~~~l~-~~g~fvt  156 (780)
T KOG1098|consen  115 LHDGAPNVGGNWVQDAFQQACLTLRALKLATEFLA-KGGTFVT  156 (780)
T ss_pred             eecCCCccchhHHHHHHHhhHHHHHHHHHHHHHHH-hcCcccc
Confidence            86433    3466 421       25667777888 8999775

>cd08293 PTGR2 Prostaglandin reductase

Probab=92.82  E-value=1.4  Score=38.35  Aligned_cols=93  Identities=13%  Similarity=0.028  Sum_probs=59.8

Q ss_pred             CeEEEEcC--cccHhHHHHHhh-CC-eEEEEcCCHHHHHHHhc-CCCceEEeCCCCch-hhhhhccCCCCceeeEEEccc
Q 037961           35 NLAWDVGT--RSGQAAASLAQI-YQ-HVIATDTSPKQLKFAIK-LPNIRYQLTPTMSI-TELEQNVATQSSVDLVTIASA  108 (262)
Q Consensus        35 ~~vlDvGc--G~G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~D~V~~~~~  108 (262)
                      .+||=.|+  |.|..+.++++. |. +|++++.+++..+.+++ ..--.++.....+. ..+..+  ....+|+|+-...
T Consensus       156 ~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~lGa~~vi~~~~~~~~~~i~~~--~~~gvd~vid~~g  233 (345)
T cd08293         156 QTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSELGFDAAINYKTDNVAERLREL--CPEGVDVYFDNVG  233 (345)
T ss_pred             CEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhcCCcEEEECCCCCHHHHHHHH--CCCCceEEEECCC
Confidence            78888876  458888888775 77 79999999988887765 32112222221111 112222  2256999985432


Q ss_pred             cccCChhHHHHHHHHhhcCCCeEEEEEe
Q 037961          109 LHWFDLPQFYKQVKWVLKKPSGVIAAWT  136 (262)
Q Consensus       109 ~~~~d~~~~l~~~~r~Lk~pgG~l~i~~  136 (262)
                            ...+.++.+.|+ ++|+++.+.
T Consensus       234 ------~~~~~~~~~~l~-~~G~iv~~G  254 (345)
T cd08293         234 ------GEISDTVISQMN-ENSHIILCG  254 (345)
T ss_pred             ------cHHHHHHHHHhc-cCCEEEEEe
Confidence                  124578899999 999999765

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid

>PLN02827 Alcohol dehydrogenase-like

Probab=92.56  E-value=1.5  Score=39.14  Aligned_cols=99  Identities=13%  Similarity=0.080  Sum_probs=62.5

Q ss_pred             CCCCCeEEEEcCcc-cHhHHHHHhh-CC-eEEEEcCCHHHHHHHhcCCCceEEeCCC--Cch-hhhhhccCCCCceeeEE
Q 037961           31 TPKRNLAWDVGTRS-GQAAASLAQI-YQ-HVIATDTSPKQLKFAIKLPNIRYQLTPT--MSI-TELEQNVATQSSVDLVT  104 (262)
Q Consensus        31 ~~~~~~vlDvGcG~-G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~D~V~  104 (262)
                      ..++.+||-.|+|+ |.++.++++. |. .|+++|.++...+.+++..--.++....  ... ..+..+  ..+.+|+|+
T Consensus       191 ~~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~lGa~~~i~~~~~~~~~~~~v~~~--~~~g~d~vi  268 (378)
T PLN02827        191 VSKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKTFGVTDFINPNDLSEPIQQVIKRM--TGGGADYSF  268 (378)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCcEEEcccccchHHHHHHHHH--hCCCCCEEE
Confidence            35778889888875 6676667664 66 5889999999988887653212222111  000 111112  123689998


Q ss_pred             EccccccCChhHHHHHHHHhhcCCC-eEEEEEec
Q 037961          105 IASALHWFDLPQFYKQVKWVLKKPS-GVIAAWTY  137 (262)
Q Consensus       105 ~~~~~~~~d~~~~l~~~~r~Lk~pg-G~l~i~~~  137 (262)
                      -...     ....+..+.++|+ +| |+++++..
T Consensus       269 d~~G-----~~~~~~~~l~~l~-~g~G~iv~~G~  296 (378)
T PLN02827        269 ECVG-----DTGIATTALQSCS-DGWGLTVTLGV  296 (378)
T ss_pred             ECCC-----ChHHHHHHHHhhc-cCCCEEEEECC
Confidence            5432     2346788999999 88 99987653

>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase

Probab=92.48  E-value=1.7  Score=38.65  Aligned_cols=99  Identities=15%  Similarity=0.090  Sum_probs=63.0

Q ss_pred             CCCCCeEEEEcCcc-cHhHHHHHhh-CC-eEEEEcCCHHHHHHHhcCCCceEEeCCC--Cch-hhhhhccCCCCceeeEE
Q 037961           31 TPKRNLAWDVGTRS-GQAAASLAQI-YQ-HVIATDTSPKQLKFAIKLPNIRYQLTPT--MSI-TELEQNVATQSSVDLVT  104 (262)
Q Consensus        31 ~~~~~~vlDvGcG~-G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~D~V~  104 (262)
                      ..++.+||=.|||. |..+.++++. |. +|+++|.++.-++.+++..--..+....  ... ..+..+  ..+.+|+|+
T Consensus       183 ~~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~~Ga~~~i~~~~~~~~~~~~v~~~--~~~g~d~vi  260 (368)
T TIGR02818       183 VEEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKKLGATDCVNPNDYDKPIQEVIVEI--TDGGVDYSF  260 (368)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCCeEEcccccchhHHHHHHHH--hCCCCCEEE
Confidence            35678888889875 7777777764 76 7999999999999887653212221110  000 111122  123689888


Q ss_pred             EccccccCChhHHHHHHHHhhcCCC-eEEEEEec
Q 037961          105 IASALHWFDLPQFYKQVKWVLKKPS-GVIAAWTY  137 (262)
Q Consensus       105 ~~~~~~~~d~~~~l~~~~r~Lk~pg-G~l~i~~~  137 (262)
                      -...     -...+.++.+.++ +| |++++...
T Consensus       261 d~~G-----~~~~~~~~~~~~~-~~~G~~v~~g~  288 (368)
T TIGR02818       261 ECIG-----NVNVMRAALECCH-KGWGESIIIGV  288 (368)
T ss_pred             ECCC-----CHHHHHHHHHHhh-cCCCeEEEEec
Confidence            4322     1457788899998 76 99987664

The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.

>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity

Probab=92.31  E-value=2.5  Score=36.48  Aligned_cols=97  Identities=16%  Similarity=0.105  Sum_probs=63.0

Q ss_pred             CCCCCeEEEEcC--cccHhHHHHHhh-CCeEEEEcCCHHHHHHHhcCCCceEEeCCCCch-hhhhhccCCCCceeeEEEc
Q 037961           31 TPKRNLAWDVGT--RSGQAAASLAQI-YQHVIATDTSPKQLKFAIKLPNIRYQLTPTMSI-TELEQNVATQSSVDLVTIA  106 (262)
Q Consensus        31 ~~~~~~vlDvGc--G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~D~V~~~  106 (262)
                      ..++.+||=.|+  |.|..+.++++. |.+|++++.+++-.+.+++..--.++.....+. ..+..+  ..+.+|+|+-.
T Consensus       141 ~~~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~s~~~~~~l~~~Ga~~vi~~~~~~~~~~v~~~--~~~gvd~vld~  218 (329)
T cd08294         141 PKAGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAGSDDKVAWLKELGFDAVFNYKTVSLEEALKEA--APDGIDCYFDN  218 (329)
T ss_pred             CCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCEEEeCCCccHHHHHHHH--CCCCcEEEEEC
Confidence            356778887774  457777777774 889999999999888887753222222221111 112222  23569999853


Q ss_pred             cccccCChhHHHHHHHHhhcCCCeEEEEEe
Q 037961          107 SALHWFDLPQFYKQVKWVLKKPSGVIAAWT  136 (262)
Q Consensus       107 ~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~  136 (262)
                      ..      ...++...+.|+ ++|+++.+.
T Consensus       219 ~g------~~~~~~~~~~l~-~~G~iv~~g  241 (329)
T cd08294         219 VG------GEFSSTVLSHMN-DFGRVAVCG  241 (329)
T ss_pred             CC------HHHHHHHHHhhc-cCCEEEEEc
Confidence            32      256788999999 999998754

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac

>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]

Probab=92.30  E-value=3.2  Score=36.39  Aligned_cols=101  Identities=17%  Similarity=0.116  Sum_probs=64.5

Q ss_pred             CCCCCeEEEEcCc--ccHhHHHHHhh-CCeEEEEcCCHHHHHHHhcCCCceEEeCCCCch-hhhhhccCCCCceeeEEEc
Q 037961           31 TPKRNLAWDVGTR--SGQAAASLAQI-YQHVIATDTSPKQLKFAIKLPNIRYQLTPTMSI-TELEQNVATQSSVDLVTIA  106 (262)
Q Consensus        31 ~~~~~~vlDvGcG--~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~D~V~~~  106 (262)
                      .+++.+||=.|+.  .|.++.+|++. |..++++--+++-.+.+++.-.-..+.-....+ +...++ .....+|+|+-.
T Consensus       140 l~~g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~s~~k~~~~~~lGAd~vi~y~~~~~~~~v~~~-t~g~gvDvv~D~  218 (326)
T COG0604         140 LKPGETVLVHGAAGGVGSAAIQLAKALGATVVAVVSSSEKLELLKELGADHVINYREEDFVEQVREL-TGGKGVDVVLDT  218 (326)
T ss_pred             CCCCCEEEEecCCchHHHHHHHHHHHcCCcEEEEecCHHHHHHHHhcCCCEEEcCCcccHHHHHHHH-cCCCCceEEEEC
Confidence            4568888888743  47888888886 558888888887777777763322222111001 112222 123469999954


Q ss_pred             cccccCChhHHHHHHHHhhcCCCeEEEEEecCC
Q 037961          107 SALHWFDLPQFYKQVKWVLKKPSGVIAAWTYTM  139 (262)
Q Consensus       107 ~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~~~  139 (262)
                      -.      ...+.+..+.|+ ++|+++.+....
T Consensus       219 vG------~~~~~~~l~~l~-~~G~lv~ig~~~  244 (326)
T COG0604         219 VG------GDTFAASLAALA-PGGRLVSIGALS  244 (326)
T ss_pred             CC------HHHHHHHHHHhc-cCCEEEEEecCC
Confidence            43      456777899999 999999866543

>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]

Probab=92.16  E-value=0.29  Score=43.29  Aligned_cols=41  Identities=22%  Similarity=0.174  Sum_probs=34.2

Q ss_pred             CCCeEEEEcCcccHhHHHHHh-hCCeEEEEcCCHHHHHHHhc
Q 037961           33 KRNLAWDVGTRSGQAAASLAQ-IYQHVIATDTSPKQLKFAIK   73 (262)
Q Consensus        33 ~~~~vlDvGcG~G~~~~~l~~-~~~~v~~vD~s~~~~~~a~~   73 (262)
                      +-..++|+|.|.|.+++.++= ++..|.+||-|....+.|++
T Consensus       153 gi~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq~~~~ra~r  194 (476)
T KOG2651|consen  153 GIDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQRLVERAQR  194 (476)
T ss_pred             CCCeeEEcCCCchHHHHHHhhccCceEEEeccchHHHHHHHH
Confidence            345689999999999999875 58899999999877777664

>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase

Probab=92.09  E-value=2.4  Score=36.91  Aligned_cols=98  Identities=15%  Similarity=0.113  Sum_probs=63.5

Q ss_pred             CCCCCeEEEEcC--cccHhHHHHHhh-CCeEEEEcCCHHHHHHHhc-CCCceEEeCC-CCch-hhhhhccCCCCceeeEE
Q 037961           31 TPKRNLAWDVGT--RSGQAAASLAQI-YQHVIATDTSPKQLKFAIK-LPNIRYQLTP-TMSI-TELEQNVATQSSVDLVT  104 (262)
Q Consensus        31 ~~~~~~vlDvGc--G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~-~~~~~~~~~~-~~~~-~~~~~~~~~~~~~D~V~  104 (262)
                      ..++.+||=.|+  |.|..+.++++. |.+|++++.+++..+.+++ ..--.++..+ .... ..+....  .+.+|+|+
T Consensus       149 ~~~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~i~~~~--~~gvd~v~  226 (338)
T cd08295         149 PKKGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGSDEKVDLLKNKLGFDDAFNYKEEPDLDAALKRYF--PNGIDIYF  226 (338)
T ss_pred             CCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCceeEEcCCcccHHHHHHHhC--CCCcEEEE
Confidence            357788888886  357777777774 8899999999988888876 4211222211 1011 1122221  25699998


Q ss_pred             EccccccCChhHHHHHHHHhhcCCCeEEEEEec
Q 037961          105 IASALHWFDLPQFYKQVKWVLKKPSGVIAAWTY  137 (262)
Q Consensus       105 ~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~  137 (262)
                      -...      ...+.++.+.|+ ++|+++.+..
T Consensus       227 d~~g------~~~~~~~~~~l~-~~G~iv~~G~  252 (338)
T cd08295         227 DNVG------GKMLDAVLLNMN-LHGRIAACGM  252 (338)
T ss_pred             ECCC------HHHHHHHHHHhc-cCcEEEEecc
Confidence            5432      256788999999 9999997653

This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in

>cd05285 sorbitol_DH Sorbitol dehydrogenase

Probab=92.07  E-value=2.3  Score=37.12  Aligned_cols=100  Identities=17%  Similarity=0.213  Sum_probs=63.0

Q ss_pred             CCCCCeEEEEcCcc-cHhHHHHHhh-CCe-EEEEcCCHHHHHHHhcCCCceEEeCCCCc----hhhhhhccCCCCceeeE
Q 037961           31 TPKRNLAWDVGTRS-GQAAASLAQI-YQH-VIATDTSPKQLKFAIKLPNIRYQLTPTMS----ITELEQNVATQSSVDLV  103 (262)
Q Consensus        31 ~~~~~~vlDvGcG~-G~~~~~l~~~-~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~D~V  103 (262)
                      ..++.+||-.|+|. |..+..+++. |.+ |++++.++...+.+++...-.++..+...    ...+... .....+|+|
T Consensus       160 ~~~g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~~~~~-~~~~~~d~v  238 (343)
T cd05285         160 VRPGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLEFAKELGATHTVNVRTEDTPESAEKIAEL-LGGKGPDVV  238 (343)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHcCCcEEeccccccchhHHHHHHHH-hCCCCCCEE
Confidence            35667777778765 6777777765 777 99999998888877664222222222111    1112222 234569999


Q ss_pred             EEccccccCChhHHHHHHHHhhcCCCeEEEEEec
Q 037961          104 TIASALHWFDLPQFYKQVKWVLKKPSGVIAAWTY  137 (262)
Q Consensus       104 ~~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~  137 (262)
                      +-...     ....+.+..+.|+ ++|+++.+..
T Consensus       239 ld~~g-----~~~~~~~~~~~l~-~~G~~v~~g~  266 (343)
T cd05285         239 IECTG-----AESCIQTAIYATR-PGGTVVLVGM  266 (343)
T ss_pred             EECCC-----CHHHHHHHHHHhh-cCCEEEEEcc
Confidence            85432     1347888999999 9999987553

Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases

Probab=91.99  E-value=2.3  Score=37.67  Aligned_cols=99  Identities=15%  Similarity=0.083  Sum_probs=63.2

Q ss_pred             CCCCCeEEEEcCcc-cHhHHHHHhh-CC-eEEEEcCCHHHHHHHhcCCCceEEeCCCC--ch-hhhhhccCCCCceeeEE
Q 037961           31 TPKRNLAWDVGTRS-GQAAASLAQI-YQ-HVIATDTSPKQLKFAIKLPNIRYQLTPTM--SI-TELEQNVATQSSVDLVT  104 (262)
Q Consensus        31 ~~~~~~vlDvGcG~-G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~D~V~  104 (262)
                      .+++.+||=.|+|. |.++.++++. |. +|+++|.+++-++.+++..--.++.....  .. ..+..+  ..+.+|+|+
T Consensus       184 ~~~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~v~~~--~~~g~d~vi  261 (368)
T cd08300         184 VEPGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFELAKKFGATDCVNPKDHDKPIQQVLVEM--TDGGVDYTF  261 (368)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCCEEEcccccchHHHHHHHHH--hCCCCcEEE
Confidence            35678888888864 6677777764 77 69999999999998876532222221110  01 111122  223689998


Q ss_pred             EccccccCChhHHHHHHHHhhcCCC-eEEEEEec
Q 037961          105 IASALHWFDLPQFYKQVKWVLKKPS-GVIAAWTY  137 (262)
Q Consensus       105 ~~~~~~~~d~~~~l~~~~r~Lk~pg-G~l~i~~~  137 (262)
                      -...     -...+.++.+.|+ ++ |+++++..
T Consensus       262 d~~g-----~~~~~~~a~~~l~-~~~G~~v~~g~  289 (368)
T cd08300         262 ECIG-----NVKVMRAALEACH-KGWGTSVIIGV  289 (368)
T ss_pred             ECCC-----ChHHHHHHHHhhc-cCCCeEEEEcc
Confidence            5322     2357888899999 87 99988654

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim

>COG1255 Uncharacterized protein conserved in archaea [Function unknown]

Probab=91.76  E-value=1.4  Score=32.20  Aligned_cols=96  Identities=20%  Similarity=0.159  Sum_probs=58.6

Q ss_pred             HHHHhhCCCCCeEEEEcCccc-HhHHHHHhhCCeEEEEcCCHHHHHHHhcCCCceEEeCCCCchhhhhhccCCCCceeeE
Q 037961           25 KLIASKTPKRNLAWDVGTRSG-QAAASLAQIYQHVIATDTSPKQLKFAIKLPNIRYQLTPTMSITELEQNVATQSSVDLV  103 (262)
Q Consensus        25 ~~l~~~~~~~~~vlDvGcG~G-~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~V  103 (262)
                      +.++....+ ..|+|+|.|-= ..+..|+++|.+++++|+++.   .+.  .++++...|.++ ..   +. --...|+|
T Consensus         6 ~~iAre~~~-gkVvEVGiG~~~~VA~~L~e~g~dv~atDI~~~---~a~--~g~~~v~DDitn-P~---~~-iY~~A~lI   74 (129)
T COG1255           6 EYIARENAR-GKVVEVGIGFFLDVAKRLAERGFDVLATDINEK---TAP--EGLRFVVDDITN-PN---IS-IYEGADLI   74 (129)
T ss_pred             HHHHHHhcC-CcEEEEccchHHHHHHHHHHcCCcEEEEecccc---cCc--ccceEEEccCCC-cc---HH-HhhCccce
Confidence            344433333 37899998863 456778889999999999987   333  578888776111 00   00 02346777


Q ss_pred             EEccccccCChhHHHHHHHHhhcCCCeEEEEEe
Q 037961          104 TIASALHWFDLPQFYKQVKWVLKKPSGVIAAWT  136 (262)
Q Consensus       104 ~~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~  136 (262)
                      .|.-     .+....+-+.++-++=|..+++-.
T Consensus        75 YSiR-----pppEl~~~ildva~aVga~l~I~p  102 (129)
T COG1255          75 YSIR-----PPPELQSAILDVAKAVGAPLYIKP  102 (129)
T ss_pred             eecC-----CCHHHHHHHHHHHHhhCCCEEEEe
Confidence            7632     456666666666663344555533

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=91.74  E-value=2.1  Score=37.04  Aligned_cols=100  Identities=12%  Similarity=0.037  Sum_probs=62.7

Q ss_pred             CeEEEEcCcc--cHhHHHHHhhCCeEEEEcCCHHHHHHHhcCCCceEEeCC---CCchhhhhhccCCCCceeeEEEcccc
Q 037961           35 NLAWDVGTRS--GQAAASLAQIYQHVIATDTSPKQLKFAIKLPNIRYQLTP---TMSITELEQNVATQSSVDLVTIASAL  109 (262)
Q Consensus        35 ~~vlDvGcG~--G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~D~V~~~~~~  109 (262)
                      .+|+=+|||.  |.++-.|++.|.+|+.++-+++.++..++..++......   .+....  ..+.+.+.+|+|+...= 
T Consensus         3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~~~~~~i~~~~Gl~i~~~g~~~~~~~~~--~~~~~~~~~D~viv~vK-   79 (305)
T PRK05708          3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDRQRLAAYQQAGGLTLVEQGQASLYAIPA--ETADAAEPIHRLLLACK-   79 (305)
T ss_pred             ceEEEECCCHHHHHHHHHHHhCCCCeEEEEechHHHHHHhhcCCeEEeeCCcceeeccCC--CCcccccccCEEEEECC-
Confidence            4578899996  556777778899999999987777766543333332211   111000  01112357999875322 


Q ss_pred             ccCChhHHHHHHHHhhcCCCeEEEEEecCC
Q 037961          110 HWFDLPQFYKQVKWVLKKPSGVIAAWTYTM  139 (262)
Q Consensus       110 ~~~d~~~~l~~~~r~Lk~pgG~l~i~~~~~  139 (262)
                       -.+.+.+++.+...+. ++..++....+-
T Consensus        80 -~~~~~~al~~l~~~l~-~~t~vv~lQNGv  107 (305)
T PRK05708         80 -AYDAEPAVASLAHRLA-PGAELLLLQNGL  107 (305)
T ss_pred             -HHhHHHHHHHHHhhCC-CCCEEEEEeCCC
Confidence             2356778899999999 888776655443

>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins

Probab=91.69  E-value=4.1  Score=35.20  Aligned_cols=95  Identities=15%  Similarity=0.062  Sum_probs=61.4

Q ss_pred             CCCCCeEEEEcCc-ccHhHHHHHhh-CCeEEEEcCCHHHHHHHhcCCCceEEeCCCCchhhhhhccCCCCceeeEEEccc
Q 037961           31 TPKRNLAWDVGTR-SGQAAASLAQI-YQHVIATDTSPKQLKFAIKLPNIRYQLTPTMSITELEQNVATQSSVDLVTIASA  108 (262)
Q Consensus        31 ~~~~~~vlDvGcG-~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~  108 (262)
                      ..++..||-.||| .|..+..+++. |.+|++++.++..++.+++...-.++......  ....   ..+.+|+|+....
T Consensus       160 ~~~~~~vlI~g~g~iG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~---~~~~~d~vi~~~~  234 (330)
T cd08245         160 PRPGERVAVLGIGGLGHLAVQYARAMGFETVAITRSPDKRELARKLGADEVVDSGAEL--DEQA---AAGGADVILVTVV  234 (330)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhCCcEEeccCCcc--hHHh---ccCCCCEEEECCC
Confidence            3566778888987 57777777665 88999999999998887654211222211100  0111   1246898885321


Q ss_pred             cccCChhHHHHHHHHhhcCCCeEEEEEe
Q 037961          109 LHWFDLPQFYKQVKWVLKKPSGVIAAWT  136 (262)
Q Consensus       109 ~~~~d~~~~l~~~~r~Lk~pgG~l~i~~  136 (262)
                           ....+.++.+.|+ ++|+++.+.
T Consensus       235 -----~~~~~~~~~~~l~-~~G~~i~~~  256 (330)
T cd08245         235 -----SGAAAEAALGGLR-RGGRIVLVG  256 (330)
T ss_pred             -----cHHHHHHHHHhcc-cCCEEEEEC
Confidence                 1347788899999 999998754

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an

>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1

Probab=91.37  E-value=3.1  Score=36.02  Aligned_cols=89  Identities=11%  Similarity=0.105  Sum_probs=54.8

Q ss_pred             cCc-ccHhHHHHHhh-CCeEEEEcCCHHHHHHHhcCCCceEEeCCCCch-hhhhhccCCCCceeeEEEccccccCChhHH
Q 037961           41 GTR-SGQAAASLAQI-YQHVIATDTSPKQLKFAIKLPNIRYQLTPTMSI-TELEQNVATQSSVDLVTIASALHWFDLPQF  117 (262)
Q Consensus        41 GcG-~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~D~V~~~~~~~~~d~~~~  117 (262)
                      |+| .|..+.++++. |.++++++.++.-.+.+++...-.++....... ..+.... ....+|+|+-...      ...
T Consensus       152 g~g~vG~~a~q~a~~~G~~vi~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~v~~~~-~~~~~d~vid~~g------~~~  224 (324)
T cd08291         152 AASALGRMLVRLCKADGIKVINIVRRKEQVDLLKKIGAEYVLNSSDPDFLEDLKELI-AKLNATIFFDAVG------GGL  224 (324)
T ss_pred             CccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCcEEEECCCccHHHHHHHHh-CCCCCcEEEECCC------cHH
Confidence            555 37777777764 889999999999988888753222332221111 1122221 2346899985332      233


Q ss_pred             HHHHHHhhcCCCeEEEEEec
Q 037961          118 YKQVKWVLKKPSGVIAAWTY  137 (262)
Q Consensus       118 l~~~~r~Lk~pgG~l~i~~~  137 (262)
                      .....+.|+ +||+++.+..
T Consensus       225 ~~~~~~~l~-~~G~~v~~g~  243 (324)
T cd08291         225 TGQILLAMP-YGSTLYVYGY  243 (324)
T ss_pred             HHHHHHhhC-CCCEEEEEEe
Confidence            456788899 9999988654

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin

>PLN02178 cinnamyl-alcohol dehydrogenase

Probab=91.21  E-value=2  Score=38.29  Aligned_cols=95  Identities=16%  Similarity=0.123  Sum_probs=58.8

Q ss_pred             CCCCeEEEEcCcc-cHhHHHHHhh-CCeEEEEcCCHHH-HHHHhcCCCceEEeCCCCchhhhhhccCCCCceeeEEEccc
Q 037961           32 PKRNLAWDVGTRS-GQAAASLAQI-YQHVIATDTSPKQ-LKFAIKLPNIRYQLTPTMSITELEQNVATQSSVDLVTIASA  108 (262)
Q Consensus        32 ~~~~~vlDvGcG~-G~~~~~l~~~-~~~v~~vD~s~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~  108 (262)
                      .++.+||=.|+|. |..+.++++. |++|++++.+++. .+.+++. +........ ....+....   +.+|+|+-...
T Consensus       177 ~~g~~VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~~~~~~~~~a~~l-Ga~~~i~~~-~~~~v~~~~---~~~D~vid~~G  251 (375)
T PLN02178        177 ESGKRLGVNGLGGLGHIAVKIGKAFGLRVTVISRSSEKEREAIDRL-GADSFLVTT-DSQKMKEAV---GTMDFIIDTVS  251 (375)
T ss_pred             CCCCEEEEEcccHHHHHHHHHHHHcCCeEEEEeCChHHhHHHHHhC-CCcEEEcCc-CHHHHHHhh---CCCcEEEECCC
Confidence            3577888888875 7777777764 8899999987654 5556554 222221110 001122211   24898885322


Q ss_pred             cccCChhHHHHHHHHhhcCCCeEEEEEec
Q 037961          109 LHWFDLPQFYKQVKWVLKKPSGVIAAWTY  137 (262)
Q Consensus       109 ~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~  137 (262)
                           ....+.++.+.|+ +||+++.+..
T Consensus       252 -----~~~~~~~~~~~l~-~~G~iv~vG~  274 (375)
T PLN02178        252 -----AEHALLPLFSLLK-VSGKLVALGL  274 (375)
T ss_pred             -----cHHHHHHHHHhhc-CCCEEEEEcc
Confidence                 2347788899999 9999998654

>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family

Probab=91.11  E-value=3.5  Score=36.75  Aligned_cols=100  Identities=20%  Similarity=0.163  Sum_probs=61.5

Q ss_pred             CCCCCeEEEEcCcc-cHhHHHHHhh-CC-eEEEEcCCHHHHHHHhcCCCceEEeCC-CC---c-hhhhhhccCCCCceee
Q 037961           31 TPKRNLAWDVGTRS-GQAAASLAQI-YQ-HVIATDTSPKQLKFAIKLPNIRYQLTP-TM---S-ITELEQNVATQSSVDL  102 (262)
Q Consensus        31 ~~~~~~vlDvGcG~-G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~-~~---~-~~~~~~~~~~~~~~D~  102 (262)
                      ..++.+||=.|+|. |..+..+++. |. +|++++.++.-.+.+++.. +...... ..   . ...+..+. ....+|+
T Consensus       201 ~~~g~~VlV~g~g~vG~~ai~lA~~~G~~~vi~~~~~~~~~~~~~~~g-~~~~v~~~~~~~~~~~~~v~~~~-~g~gvDv  278 (384)
T cd08265         201 FRPGAYVVVYGAGPIGLAAIALAKAAGASKVIAFEISEERRNLAKEMG-ADYVFNPTKMRDCLSGEKVMEVT-KGWGADI  278 (384)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcC-CCEEEcccccccccHHHHHHHhc-CCCCCCE
Confidence            35667777778764 5555666654 77 7999999988777776642 2222111 10   0 01122222 3446999


Q ss_pred             EEEccccccCChhHHHHHHHHhhcCCCeEEEEEec
Q 037961          103 VTIASALHWFDLPQFYKQVKWVLKKPSGVIAAWTY  137 (262)
Q Consensus       103 V~~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~  137 (262)
                      |+....    +....+.++.+.|+ ++|+++.+..
T Consensus       279 vld~~g----~~~~~~~~~~~~l~-~~G~~v~~g~  308 (384)
T cd08265         279 QVEAAG----APPATIPQMEKSIA-INGKIVYIGR  308 (384)
T ss_pred             EEECCC----CcHHHHHHHHHHHH-cCCEEEEECC
Confidence            985422    33567889999999 9999997653

This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi

>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family

Probab=90.98  E-value=2.6  Score=37.19  Aligned_cols=99  Identities=19%  Similarity=0.164  Sum_probs=59.5

Q ss_pred             CCCCeEEEEcCc-ccHhHHHHHhh-CCe-EEEEcCCHHHHHHHhcCCCceEEeCCCCch-hhhhhccCCCCceeeEEEcc
Q 037961           32 PKRNLAWDVGTR-SGQAAASLAQI-YQH-VIATDTSPKQLKFAIKLPNIRYQLTPTMSI-TELEQNVATQSSVDLVTIAS  107 (262)
Q Consensus        32 ~~~~~vlDvGcG-~G~~~~~l~~~-~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~D~V~~~~  107 (262)
                      .++.+||=.|+| .|..+..+++. +.+ +++++.++...+.+++..-..++..+.... ..+... .....+|+|+...
T Consensus       186 ~~g~~VlI~g~g~vG~~~~~lak~~G~~~vi~~~~s~~~~~~~~~~g~~~v~~~~~~~~~~~l~~~-~~~~~~d~vld~v  264 (367)
T cd08263         186 RPGETVAVIGVGGVGSSAIQLAKAFGASPIIAVDVRDEKLAKAKELGATHTVNAAKEDAVAAIREI-TGGRGVDVVVEAL  264 (367)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHhCCceEecCCcccHHHHHHHH-hCCCCCCEEEEeC
Confidence            355666666765 36666666654 666 999999998888776542212222211011 111112 1345699998542


Q ss_pred             ccccCChhHHHHHHHHhhcCCCeEEEEEec
Q 037961          108 ALHWFDLPQFYKQVKWVLKKPSGVIAAWTY  137 (262)
Q Consensus       108 ~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~  137 (262)
                      .     ....++++.+.|+ ++|+++.+..
T Consensus       265 g-----~~~~~~~~~~~l~-~~G~~v~~g~  288 (367)
T cd08263         265 G-----KPETFKLALDVVR-DGGRAVVVGL  288 (367)
T ss_pred             C-----CHHHHHHHHHHHh-cCCEEEEEcc
Confidence            2     1136788999999 9999987653

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu

>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase

Probab=90.92  E-value=3  Score=36.89  Aligned_cols=100  Identities=17%  Similarity=0.113  Sum_probs=62.9

Q ss_pred             CCCCCeEEEEcCcc-cHhHHHHHhh-CC-eEEEEcCCHHHHHHHhcCCCceEEeCCCC--ch-hhhhhccCCCCceeeEE
Q 037961           31 TPKRNLAWDVGTRS-GQAAASLAQI-YQ-HVIATDTSPKQLKFAIKLPNIRYQLTPTM--SI-TELEQNVATQSSVDLVT  104 (262)
Q Consensus        31 ~~~~~~vlDvGcG~-G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~D~V~  104 (262)
                      ..++.+||=.|+|. |.++.++++. |. +|+++|.+++.++.+++.....++.....  .. ..+..+  ..+.+|+|+
T Consensus       185 ~~~g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~v~~~--~~~~~d~vi  262 (369)
T cd08301         185 VKKGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPSKFEQAKKFGVTEFVNPKDHDKPVQEVIAEM--TGGGVDYSF  262 (369)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEEcccccchhHHHHHHHH--hCCCCCEEE
Confidence            35778888888764 6666666664 76 79999999999999887532222221110  01 111122  223689887


Q ss_pred             EccccccCChhHHHHHHHHhhcCCC-eEEEEEecC
Q 037961          105 IASALHWFDLPQFYKQVKWVLKKPS-GVIAAWTYT  138 (262)
Q Consensus       105 ~~~~~~~~d~~~~l~~~~r~Lk~pg-G~l~i~~~~  138 (262)
                      -...     ....+..+.+.++ +| |++++....
T Consensus       263 d~~G-----~~~~~~~~~~~~~-~~~g~~v~~g~~  291 (369)
T cd08301         263 ECTG-----NIDAMISAFECVH-DGWGVTVLLGVP  291 (369)
T ss_pred             ECCC-----ChHHHHHHHHHhh-cCCCEEEEECcC
Confidence            4321     2457788889999 86 999886543

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the

>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase

Probab=90.88  E-value=3.1  Score=36.78  Aligned_cols=99  Identities=14%  Similarity=0.089  Sum_probs=61.3

Q ss_pred             CCCCeEEEEcCcc-cHhHHHHHhh-CC-eEEEEcCCHHHHHHHhcCCCceEEeCCC--Cch-hhhhhccCCCCceeeEEE
Q 037961           32 PKRNLAWDVGTRS-GQAAASLAQI-YQ-HVIATDTSPKQLKFAIKLPNIRYQLTPT--MSI-TELEQNVATQSSVDLVTI  105 (262)
Q Consensus        32 ~~~~~vlDvGcG~-G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~D~V~~  105 (262)
                      .++.+||=.|+|. |..+..+++. |. +|+++|.++.-++.+++..--.++....  ... ..+..+  ..+.+|+|+-
T Consensus       183 ~~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~--~~~g~d~vid  260 (365)
T cd08277         183 EPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEKAKEFGATDFINPKDSDKPVSEVIREM--TGGGVDYSFE  260 (365)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCCcEeccccccchHHHHHHHH--hCCCCCEEEE
Confidence            5677888888764 6666666664 76 7999999999998887652212221111  000 112222  1246899984


Q ss_pred             ccccccCChhHHHHHHHHhhcCCC-eEEEEEecC
Q 037961          106 ASALHWFDLPQFYKQVKWVLKKPS-GVIAAWTYT  138 (262)
Q Consensus       106 ~~~~~~~d~~~~l~~~~r~Lk~pg-G~l~i~~~~  138 (262)
                      ...     ....+.++.+.|+ ++ |++++....
T Consensus       261 ~~g-----~~~~~~~~~~~l~-~~~G~~v~~g~~  288 (365)
T cd08277         261 CTG-----NADLMNEALESTK-LGWGVSVVVGVP  288 (365)
T ss_pred             CCC-----ChHHHHHHHHhcc-cCCCEEEEEcCC
Confidence            322     1357788899998 75 999886543

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i

>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase

Probab=90.84  E-value=3.4  Score=36.57  Aligned_cols=98  Identities=20%  Similarity=0.184  Sum_probs=62.2

Q ss_pred             CCCCeEEEEcCcc-cHhHHHHHhh-CC-eEEEEcCCHHHHHHHhcCCCceEEeCCCCch-hhhhhccCCCCceeeEEEcc
Q 037961           32 PKRNLAWDVGTRS-GQAAASLAQI-YQ-HVIATDTSPKQLKFAIKLPNIRYQLTPTMSI-TELEQNVATQSSVDLVTIAS  107 (262)
Q Consensus        32 ~~~~~vlDvGcG~-G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~D~V~~~~  107 (262)
                      .++.+||=.|+|. |..+..+++. |. .++++|.++...+.+++..-..++....... ..+....  ...+|+|+-..
T Consensus       185 ~~g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~~k~~~~~~~g~~~~i~~~~~~~~~~v~~~~--~~~~d~vld~~  262 (365)
T cd08278         185 RPGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAKELGATHVINPKEEDLVAAIREIT--GGGVDYALDTT  262 (365)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCcEEecCCCcCHHHHHHHHh--CCCCcEEEECC
Confidence            4667778788764 6677677764 77 5999999999888877653222222221111 1122222  34689998532


Q ss_pred             ccccCChhHHHHHHHHhhcCCCeEEEEEec
Q 037961          108 ALHWFDLPQFYKQVKWVLKKPSGVIAAWTY  137 (262)
Q Consensus       108 ~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~  137 (262)
                      .     ....+.++.+.|+ ++|+++.+..
T Consensus       263 g-----~~~~~~~~~~~l~-~~G~~v~~g~  286 (365)
T cd08278         263 G-----VPAVIEQAVDALA-PRGTLALVGA  286 (365)
T ss_pred             C-----CcHHHHHHHHHhc-cCCEEEEeCc
Confidence            2     1356889999999 9999987654

Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu

>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase

Probab=90.83  E-value=4.1  Score=35.64  Aligned_cols=98  Identities=15%  Similarity=0.182  Sum_probs=60.6

Q ss_pred             CCCCeEEEEcCcc-cHhHHHHHhh-CC-eEEEEcCCHHHHHHHhcCCCceEEeCC-CCch-hhhhhccCCCCceeeEEEc
Q 037961           32 PKRNLAWDVGTRS-GQAAASLAQI-YQ-HVIATDTSPKQLKFAIKLPNIRYQLTP-TMSI-TELEQNVATQSSVDLVTIA  106 (262)
Q Consensus        32 ~~~~~vlDvGcG~-G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~D~V~~~  106 (262)
                      .++.+||=.|+|. |..+.++++. |. +|++++.+++..+.+++.. ....... .... ..+... .....+|+|+-.
T Consensus       171 ~~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~~~g-a~~~i~~~~~~~~~~l~~~-~~~~~~d~vid~  248 (351)
T cd08233         171 KPGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELAEELG-ATIVLDPTEVDVVAEVRKL-TGGGGVDVSFDC  248 (351)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhC-CCEEECCCccCHHHHHHHH-hCCCCCCEEEEC
Confidence            4667777777653 5566666654 77 7999999999888887642 2222211 1111 112222 123459999854


Q ss_pred             cccccCChhHHHHHHHHhhcCCCeEEEEEec
Q 037961          107 SALHWFDLPQFYKQVKWVLKKPSGVIAAWTY  137 (262)
Q Consensus       107 ~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~  137 (262)
                      ..     ....++.+.+.|+ ++|+++....
T Consensus       249 ~g-----~~~~~~~~~~~l~-~~G~~v~~g~  273 (351)
T cd08233         249 AG-----VQATLDTAIDALR-PRGTAVNVAI  273 (351)
T ss_pred             CC-----CHHHHHHHHHhcc-CCCEEEEEcc
Confidence            22     1347788999999 9999987554

(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.

>PRK13699 putative methylase; Provisional

Probab=90.78  E-value=0.32  Score=40.31  Aligned_cols=42  Identities=14%  Similarity=0.175  Sum_probs=30.3

Q ss_pred             CCCCceeeEEEccccc-----cCC-----------hhHHHHHHHHhhcCCCeEEEEEec
Q 037961           95 ATQSSVDLVTIASALH-----WFD-----------LPQFYKQVKWVLKKPSGVIAAWTY  137 (262)
Q Consensus        95 ~~~~~~D~V~~~~~~~-----~~d-----------~~~~l~~~~r~Lk~pgG~l~i~~~  137 (262)
                      ++++++|+|+......     ..+           ...++.+++|+|| |||.++++..
T Consensus        16 lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLK-pgg~l~if~~   73 (227)
T PRK13699         16 FPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLK-KDALMVSFYG   73 (227)
T ss_pred             CCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcC-CCCEEEEEec
Confidence            5788999998864331     000           2458899999999 9999988543

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=90.69  E-value=0.74  Score=44.41  Aligned_cols=105  Identities=15%  Similarity=0.190  Sum_probs=58.5

Q ss_pred             CCCCeEEEEcCcccHhHHHHHhh--------------CCeEEEEcCCH---HHHHHHhc-------------------CC
Q 037961           32 PKRNLAWDVGTRSGQAAASLAQI--------------YQHVIATDTSP---KQLKFAIK-------------------LP   75 (262)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~--------------~~~v~~vD~s~---~~~~~a~~-------------------~~   75 (262)
                      .+.-+|+|+|-|+|.......+.              --+++++|..|   +.+..+.+                   .+
T Consensus        56 ~~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  135 (662)
T PRK01747         56 RRRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLP  135 (662)
T ss_pred             CCcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCC
Confidence            34478999999999866654421              12788999643   33332211                   01


Q ss_pred             Cc---eEEeCC---CCchhhhhhc-cCCCCceeeEEEccccccCC----hhHHHHHHHHhhcCCCeEEEEEec
Q 037961           76 NI---RYQLTP---TMSITELEQN-VATQSSVDLVTIASALHWFD----LPQFYKQVKWVLKKPSGVIAAWTY  137 (262)
Q Consensus        76 ~~---~~~~~~---~~~~~~~~~~-~~~~~~~D~V~~~~~~~~~d----~~~~l~~~~r~Lk~pgG~l~i~~~  137 (262)
                      ++   .+..+.   .+-.+|+.+. +--...+|+|+...--.--+    .+.++++++|+++ |||+|+-++.
T Consensus       136 g~~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~-~~~~~~t~t~  207 (662)
T PRK01747        136 GCHRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGFAPAKNPDMWSPNLFNALARLAR-PGATLATFTS  207 (662)
T ss_pred             CceEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCCCCccChhhccHHHHHHHHHHhC-CCCEEEEeeh
Confidence            11   111111   1222455442 21235688888532111111    2558999999999 9999997654

>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised

Probab=90.67  E-value=2.4  Score=35.28  Aligned_cols=99  Identities=14%  Similarity=0.092  Sum_probs=50.9

Q ss_pred             CCCeEEEEcCccc-HhHHHHHhhCCeEEEEcCCHHHHHHHhcC-----CCceEEeCCCCchhhhhh-ccC-CCCceeeEE
Q 037961           33 KRNLAWDVGTRSG-QAAASLAQIYQHVIATDTSPKQLKFAIKL-----PNIRYQLTPTMSITELEQ-NVA-TQSSVDLVT  104 (262)
Q Consensus        33 ~~~~vlDvGcG~G-~~~~~l~~~~~~v~~vD~s~~~~~~a~~~-----~~~~~~~~~~~~~~~~~~-~~~-~~~~~D~V~  104 (262)
                      .+..||-+|=..- +++..+.....+|+.+|+++.+++..++.     -.++....|      +.+ +|- -.++||+++
T Consensus        44 ~gk~il~lGDDDLtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~i~~~~~D------lR~~LP~~~~~~fD~f~  117 (243)
T PF01861_consen   44 EGKRILFLGDDDLTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLPIEAVHYD------LRDPLPEELRGKFDVFF  117 (243)
T ss_dssp             TT-EEEEES-TT-HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT--EEEE---------TTS---TTTSS-BSEEE
T ss_pred             cCCEEEEEcCCcHHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCceEEEEec------ccccCCHHHhcCCCEEE
Confidence            6788999986553 23333444578999999999999976642     236666655      211 221 247899999


Q ss_pred             EccccccCChhHHHHHHHHhhcCCCeEEEEEecC
Q 037961          105 IASALHWFDLPQFYKQVKWVLKKPSGVIAAWTYT  138 (262)
Q Consensus       105 ~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~~  138 (262)
                      +...----...-+++.....||.+||. ..+.++
T Consensus       118 TDPPyT~~G~~LFlsRgi~~Lk~~g~~-gy~~~~  150 (243)
T PF01861_consen  118 TDPPYTPEGLKLFLSRGIEALKGEGCA-GYFGFT  150 (243)
T ss_dssp             E---SSHHHHHHHHHHHHHTB-STT-E-EEEEE-
T ss_pred             eCCCCCHHHHHHHHHHHHHHhCCCCce-EEEEEe
Confidence            864422113445899999999944444 444444

All the members are 350-400 amino acids long.; PDB: 2QM3_A.

>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members

Probab=90.60  E-value=3.4  Score=34.68  Aligned_cols=95  Identities=20%  Similarity=0.158  Sum_probs=61.0

Q ss_pred             CCCCCeEEEEcCcc-cHhHHHHHhh-CCe-EEEEcCCHHHHHHHhcCCCceEEeCCCCchhhhhhccCCCCceeeEEEcc
Q 037961           31 TPKRNLAWDVGTRS-GQAAASLAQI-YQH-VIATDTSPKQLKFAIKLPNIRYQLTPTMSITELEQNVATQSSVDLVTIAS  107 (262)
Q Consensus        31 ~~~~~~vlDvGcG~-G~~~~~l~~~-~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~  107 (262)
                      ..++.++|=.|||. |..+..+++. +.+ |++++.+++.++.+++..........    .. ..  .....+|+|+...
T Consensus        95 ~~~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~~g~~~~~~~~----~~-~~--~~~~~~d~vl~~~  167 (277)
T cd08255          95 PRLGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEALGPADPVAAD----TA-DE--IGGRGADVVIEAS  167 (277)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHHHcCCCcccccc----ch-hh--hcCCCCCEEEEcc
Confidence            34667778788875 6677767664 777 99999999998877765301110000    00 00  1344689988532


Q ss_pred             ccccCChhHHHHHHHHhhcCCCeEEEEEecC
Q 037961          108 ALHWFDLPQFYKQVKWVLKKPSGVIAAWTYT  138 (262)
Q Consensus       108 ~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~~  138 (262)
                      .     ....+.+..+.|+ ++|+++.+...
T Consensus       168 ~-----~~~~~~~~~~~l~-~~g~~~~~g~~  192 (277)
T cd08255         168 G-----SPSALETALRLLR-DRGRVVLVGWY  192 (277)
T ss_pred             C-----ChHHHHHHHHHhc-CCcEEEEEecc
Confidence            1     2357788899999 99999876543

This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD

>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]

Probab=90.59  E-value=1.2  Score=36.99  Aligned_cols=100  Identities=18%  Similarity=0.133  Sum_probs=65.3

Q ss_pred             CCCCCeEEEEcCcccHhHHHHHhh-CC--eEEEEcCCH----HHHHHHhcCCCceEEeCC-CCchhhhhhccCCCCceee
Q 037961           31 TPKRNLAWDVGTRSGQAAASLAQI-YQ--HVIATDTSP----KQLKFAIKLPNIRYQLTP-TMSITELEQNVATQSSVDL  102 (262)
Q Consensus        31 ~~~~~~vlDvGcG~G~~~~~l~~~-~~--~v~~vD~s~----~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~D~  102 (262)
                      ++++..||=+|+++|....++..- +.  -|++++.|+    +.+..|++++||--+..| ..+    ......-+-+|+
T Consensus       154 ikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkRtNiiPIiEDArhP----~KYRmlVgmVDv  229 (317)
T KOG1596|consen  154 IKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKRTNIIPIIEDARHP----AKYRMLVGMVDV  229 (317)
T ss_pred             ecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhccCCceeeeccCCCc----hheeeeeeeEEE
Confidence            368899999999999998888774 33  488999886    456677788887766655 211    001112235777


Q ss_pred             EEEccccccCChhH-HHHHHHHhhcCCCeEEEEEec
Q 037961          103 VTIASALHWFDLPQ-FYKQVKWVLKKPSGVIAAWTY  137 (262)
Q Consensus       103 V~~~~~~~~~d~~~-~l~~~~r~Lk~pgG~l~i~~~  137 (262)
                      |++..+-  -|... +.-++.-.|| +||.+++..-
T Consensus       230 IFaDvaq--pdq~RivaLNA~~FLk-~gGhfvisik  262 (317)
T KOG1596|consen  230 IFADVAQ--PDQARIVALNAQYFLK-NGGHFVISIK  262 (317)
T ss_pred             EeccCCC--chhhhhhhhhhhhhhc-cCCeEEEEEe
Confidence            7765331  12222 3446677899 9999998543

>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like

Probab=90.44  E-value=4.1  Score=35.49  Aligned_cols=99  Identities=22%  Similarity=0.220  Sum_probs=59.2

Q ss_pred             CCCCeEEEEcCcc-cHhHHHHHhh-C-CeEEEEcCCHHHHHHHhcCCCceEEeCCCCch-hhhhhccCCCCceeeEEEcc
Q 037961           32 PKRNLAWDVGTRS-GQAAASLAQI-Y-QHVIATDTSPKQLKFAIKLPNIRYQLTPTMSI-TELEQNVATQSSVDLVTIAS  107 (262)
Q Consensus        32 ~~~~~vlDvGcG~-G~~~~~l~~~-~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~D~V~~~~  107 (262)
                      .++.+||=.|+|. |..+..+++. | .++++++.++.....+++..--.++....... ..+..+. ....+|+|+...
T Consensus       165 ~~g~~vlI~g~g~~g~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~i~~~~-~~~~~d~vld~~  243 (345)
T cd08286         165 KPGDTVAIVGAGPVGLAALLTAQLYSPSKIIMVDLDDNRLEVAKKLGATHTVNSAKGDAIEQVLELT-DGRGVDVVIEAV  243 (345)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCCceeccccccHHHHHHHHh-CCCCCCEEEECC
Confidence            4566666677653 5555556654 6 68999999988877777643212221111111 1122221 344699998542


Q ss_pred             ccccCChhHHHHHHHHhhcCCCeEEEEEec
Q 037961          108 ALHWFDLPQFYKQVKWVLKKPSGVIAAWTY  137 (262)
Q Consensus       108 ~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~  137 (262)
                           .....+..+.+.|+ ++|+++.+..
T Consensus       244 -----g~~~~~~~~~~~l~-~~g~~v~~g~  267 (345)
T cd08286         244 -----GIPATFELCQELVA-PGGHIANVGV  267 (345)
T ss_pred             -----CCHHHHHHHHHhcc-CCcEEEEecc
Confidence                 22446888889999 9999987653

This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (

>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH)

Probab=90.41  E-value=4.6  Score=35.52  Aligned_cols=98  Identities=18%  Similarity=0.115  Sum_probs=60.0

Q ss_pred             CCCeEEEEcCcc-cHhHHHHHhh-CC-eEEEEcCCHHHHHHHhcCCCceEEeCCCCchh----hhhhccCCCCceeeEEE
Q 037961           33 KRNLAWDVGTRS-GQAAASLAQI-YQ-HVIATDTSPKQLKFAIKLPNIRYQLTPTMSIT----ELEQNVATQSSVDLVTI  105 (262)
Q Consensus        33 ~~~~vlDvGcG~-G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~D~V~~  105 (262)
                      ++.+||=.|+|. |..+..+++. |. +|++++.++...+.+++..--.++........    .+.... ....+|+|+-
T Consensus       177 ~g~~vlI~g~g~vG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~-~~~~~d~vid  255 (361)
T cd08231         177 AGDTVVVQGAGPLGLYAVAAAKLAGARRVIVIDGSPERLELAREFGADATIDIDELPDPQRRAIVRDIT-GGRGADVVIE  255 (361)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCCeEEcCcccccHHHHHHHHHHh-CCCCCcEEEE
Confidence            566777778763 5566666664 77 89999999988887765422122221111111    122221 2346999984


Q ss_pred             ccccccCChhHHHHHHHHhhcCCCeEEEEEec
Q 037961          106 ASALHWFDLPQFYKQVKWVLKKPSGVIAAWTY  137 (262)
Q Consensus       106 ~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~  137 (262)
                      ...     ....+.+..+.|+ ++|+++.+..
T Consensus       256 ~~g-----~~~~~~~~~~~l~-~~G~~v~~g~  281 (361)
T cd08231         256 ASG-----HPAAVPEGLELLR-RGGTYVLVGS  281 (361)
T ss_pred             CCC-----ChHHHHHHHHHhc-cCCEEEEEcC
Confidence            321     1356788899999 9999987653

This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino

>PLN02514 cinnamyl-alcohol dehydrogenase

Probab=90.36  E-value=2.8  Score=37.04  Aligned_cols=96  Identities=16%  Similarity=0.113  Sum_probs=57.4

Q ss_pred             CCCCeEEEEcCcc-cHhHHHHHhh-CCeEEEEcCCHHHHHHHhcCCCceEEeCCCCchhhhhhccCCCCceeeEEEcccc
Q 037961           32 PKRNLAWDVGTRS-GQAAASLAQI-YQHVIATDTSPKQLKFAIKLPNIRYQLTPTMSITELEQNVATQSSVDLVTIASAL  109 (262)
Q Consensus        32 ~~~~~vlDvGcG~-G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~  109 (262)
                      .++.+||-.|+|. |..+.++++. |.++++++.+++....+.+.-+......... ...+...   ...+|+|+-... 
T Consensus       179 ~~g~~vlV~G~G~vG~~av~~Ak~~G~~vi~~~~~~~~~~~~~~~~Ga~~~i~~~~-~~~~~~~---~~~~D~vid~~g-  253 (357)
T PLN02514        179 QSGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSDKKREEALEHLGADDYLVSSD-AAEMQEA---ADSLDYIIDTVP-  253 (357)
T ss_pred             CCCCeEEEEcccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhcCCcEEecCCC-hHHHHHh---cCCCcEEEECCC-
Confidence            3567777778764 6777777764 7889988888876655533222222211100 0111111   124888874322 


Q ss_pred             ccCChhHHHHHHHHhhcCCCeEEEEEec
Q 037961          110 HWFDLPQFYKQVKWVLKKPSGVIAAWTY  137 (262)
Q Consensus       110 ~~~d~~~~l~~~~r~Lk~pgG~l~i~~~  137 (262)
                          ....+..+.+.|+ +||+++.+..
T Consensus       254 ----~~~~~~~~~~~l~-~~G~iv~~G~  276 (357)
T PLN02514        254 ----VFHPLEPYLSLLK-LDGKLILMGV  276 (357)
T ss_pred             ----chHHHHHHHHHhc-cCCEEEEECC
Confidence                2357788899999 9999998654

>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]

Probab=90.19  E-value=0.63  Score=42.46  Aligned_cols=110  Identities=15%  Similarity=0.197  Sum_probs=69.5

Q ss_pred             CCCeEEEEcCcccHhHHHHHhh--CCeEEEEcCCHHHHHHHhcC------CCceEEeCCCCchhhhhh---ccCCCCcee
Q 037961           33 KRNLAWDVGTRSGQAAASLAQI--YQHVIATDTSPKQLKFAIKL------PNIRYQLTPTMSITELEQ---NVATQSSVD  101 (262)
Q Consensus        33 ~~~~vlDvGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~~~~---~~~~~~~~D  101 (262)
                      ....+|-+|-|.|.+...+...  ..++++++++|.|++.|+++      ....+...|.+  .....   ..-.+..||
T Consensus       295 ~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q~~r~~V~i~dGl--~~~~~~~k~~~~~~~~d  372 (482)
T KOG2352|consen  295 TGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQSDRNKVHIADGL--DFLQRTAKSQQEDICPD  372 (482)
T ss_pred             ccCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhhhhhhhhhHhhch--HHHHHHhhccccccCCc
Confidence            3456788999999998887654  47899999999999999863      11222222210  11111   112567899


Q ss_pred             eEEE----ccccccC-C-h-----hHHHHHHHHhhcCCCeEEEE-EecCCCcccHHH
Q 037961          102 LVTI----ASALHWF-D-L-----PQFYKQVKWVLKKPSGVIAA-WTYTMPEINESV  146 (262)
Q Consensus       102 ~V~~----~~~~~~~-d-~-----~~~l~~~~r~Lk~pgG~l~i-~~~~~~~~~~~~  146 (262)
                      ++..    .. -|-+ . +     +.++..+..+|. |.|.+++ ....+..+.+++
T Consensus       373 vl~~dvds~d-~~g~~~pp~~fva~~~l~~~k~~l~-p~g~f~inlv~r~~~~~~~~  427 (482)
T KOG2352|consen  373 VLMVDVDSKD-SHGMQCPPPAFVAQVALQPVKMILP-PRGMFIINLVTRNSSFKDEV  427 (482)
T ss_pred             EEEEECCCCC-cccCcCCchHHHHHHHHHHHhhccC-ccceEEEEEecCCcchhHHH
Confidence            9975    22 4444 2 2     237888999999 9999988 333444444433

>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD)

Probab=90.05  E-value=4.6  Score=35.07  Aligned_cols=96  Identities=17%  Similarity=0.132  Sum_probs=61.0

Q ss_pred             CCCCeEEEEcCcc-cHhHHHHHhh-CCeEEEEcCCHHHHHHHhcCCCceEEeCCCCch-hhhhhccCCCCceeeEEEccc
Q 037961           32 PKRNLAWDVGTRS-GQAAASLAQI-YQHVIATDTSPKQLKFAIKLPNIRYQLTPTMSI-TELEQNVATQSSVDLVTIASA  108 (262)
Q Consensus        32 ~~~~~vlDvGcG~-G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~D~V~~~~~  108 (262)
                      .++.+||=.|||. |..+..+++. |.++++++.+++-++.+++..--.++....... ..+..+    ..+|+|+... 
T Consensus       162 ~~~~~vlV~g~g~iG~~~~~~a~~~G~~vi~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~----~~~d~vi~~~-  236 (333)
T cd08296         162 KPGDLVAVQGIGGLGHLAVQYAAKMGFRTVAISRGSDKADLARKLGAHHYIDTSKEDVAEALQEL----GGAKLILATA-  236 (333)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcCCcEEecCCCccHHHHHHhc----CCCCEEEECC-
Confidence            4667888888654 6666666664 889999999998888887653222222211111 111111    3489888531 


Q ss_pred             cccCChhHHHHHHHHhhcCCCeEEEEEec
Q 037961          109 LHWFDLPQFYKQVKWVLKKPSGVIAAWTY  137 (262)
Q Consensus       109 ~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~  137 (262)
                          .....+..+.+.|+ ++|+++.+..
T Consensus       237 ----g~~~~~~~~~~~l~-~~G~~v~~g~  260 (333)
T cd08296         237 ----PNAKAISALVGGLA-PRGKLLILGA  260 (333)
T ss_pred             ----CchHHHHHHHHHcc-cCCEEEEEec
Confidence                12457888999999 9999987654

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal

>PRK11524 putative methyltransferase; Provisional

Probab=90.04  E-value=0.35  Score=41.50  Aligned_cols=41  Identities=22%  Similarity=0.262  Sum_probs=30.6

Q ss_pred             CCCCceeeEEEcccccc----CC-------------hhHHHHHHHHhhcCCCeEEEEEe
Q 037961           95 ATQSSVDLVTIASALHW----FD-------------LPQFYKQVKWVLKKPSGVIAAWT  136 (262)
Q Consensus        95 ~~~~~~D~V~~~~~~~~----~d-------------~~~~l~~~~r~Lk~pgG~l~i~~  136 (262)
                      +++++||+|++.....-    .+             ...++.++.|+|| |||.|+++.
T Consensus        23 l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK-~~G~i~i~~   80 (284)
T PRK11524         23 IPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLK-KQGTMYIMN   80 (284)
T ss_pred             cccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhC-CCcEEEEEc
Confidence            46789999999655321    01             2468899999999 999999853

>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2

Probab=90.04  E-value=0.35  Score=41.92  Aligned_cols=70  Identities=14%  Similarity=0.020  Sum_probs=45.8

Q ss_pred             eEEEEcCcccHhHHHHHhhCCe-EEEEcCCHHHHHHHhcCCCceEEeCCCCchhhhhhccCCCCceeeEEEccccc
Q 037961           36 LAWDVGTRSGQAAASLAQIYQH-VIATDTSPKQLKFAIKLPNIRYQLTPTMSITELEQNVATQSSVDLVTIASALH  110 (262)
Q Consensus        36 ~vlDvGcG~G~~~~~l~~~~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~~  110 (262)
                      +++|+-||.|.++..+...|.+ +.++|+++..++.-+.+-. ....+|... -+...  ++. .+|+++....+.
T Consensus         2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~~N~~-~~~~~Di~~-~~~~~--l~~-~~D~l~ggpPCQ   72 (335)
T PF00145_consen    2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYKANFP-EVICGDITE-IDPSD--LPK-DVDLLIGGPPCQ   72 (335)
T ss_dssp             EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHHHHHT-EEEESHGGG-CHHHH--HHH-T-SEEEEE---T
T ss_pred             cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhhhccc-ccccccccc-ccccc--ccc-cceEEEeccCCc
Confidence            5899999999999999988864 6699999999887765423 666655100 11122  333 599999876665

1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....

>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=89.92  E-value=1.8  Score=36.57  Aligned_cols=85  Identities=14%  Similarity=0.061  Sum_probs=62.5

Q ss_pred             CCCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhcCCCceEEeCCCCchhhhhhccCCCCceeeEEEcccccc
Q 037961           32 PKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKLPNIRYQLTPTMSITELEQNVATQSSVDLVTIASALHW  111 (262)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~~~  111 (262)
                      .+++..+|+|+-+|.+|-+|.+++-.|++||.. .|.+..-....++....|.     +...| .....|..+|...-  
T Consensus       210 ~~~M~avDLGAcPGGWTyqLVkr~m~V~aVDng-~ma~sL~dtg~v~h~r~DG-----fk~~P-~r~~idWmVCDmVE--  280 (358)
T COG2933         210 APGMWAVDLGACPGGWTYQLVKRNMRVYAVDNG-PMAQSLMDTGQVTHLREDG-----FKFRP-TRSNIDWMVCDMVE--  280 (358)
T ss_pred             cCCceeeecccCCCccchhhhhcceEEEEeccc-hhhhhhhcccceeeeeccC-----ccccc-CCCCCceEEeehhc--
Confidence            478999999999999999999999999999987 5555555556677666552     22222 35678888875331  


Q ss_pred             CChhHHHHHHHHhhc
Q 037961          112 FDLPQFYKQVKWVLK  126 (262)
Q Consensus       112 ~d~~~~l~~~~r~Lk  126 (262)
                       .|.++-+.+...|.
T Consensus       281 -kP~rv~~li~~Wl~  294 (358)
T COG2933         281 -KPARVAALIAKWLV  294 (358)
T ss_pred             -CcHHHHHHHHHHHH
Confidence             46667778888887

>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species

Probab=89.72  E-value=0.6  Score=36.37  Aligned_cols=94  Identities=15%  Similarity=0.180  Sum_probs=52.7

Q ss_pred             CeEEEEcCcccHhHHHHHhhCC-eEEEEcCCHHHHHHHhcCCCceEEeCCCCchhhhhhccCCCCceeeEEEccccccC-
Q 037961           35 NLAWDVGTRSGQAAASLAQIYQ-HVIATDTSPKQLKFAIKLPNIRYQLTPTMSITELEQNVATQSSVDLVTIASALHWF-  112 (262)
Q Consensus        35 ~~vlDvGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~~~~-  112 (262)
                      .+.+-+|...-.+=....++|+ +|+.+|.++--++.--+ ..+.-.    .+.+-+.++.--.++||.+.|..++.++ 
T Consensus         3 ~~g~V~GS~~PwvEv~aL~~GA~~iltveyn~L~i~~~~~-dr~ssi----~p~df~~~~~~y~~~fD~~as~~siEh~G   77 (177)
T PF03269_consen    3 KSGLVVGSMQPWVEVMALQHGAAKILTVEYNKLEIQEEFR-DRLSSI----LPVDFAKNWQKYAGSFDFAASFSSIEHFG   77 (177)
T ss_pred             ceEEEEecCCchhhHHHHHcCCceEEEEeecccccCcccc-cccccc----cHHHHHHHHHHhhccchhhheechhcccc
Confidence            4456666664333333344554 68888886421111100 111111    1111223333345789999998888543 


Q ss_pred             --------Ch---hHHHHHHHHhhcCCCeEEEE
Q 037961          113 --------DL---PQFYKQVKWVLKKPSGVIAA  134 (262)
Q Consensus       113 --------d~---~~~l~~~~r~Lk~pgG~l~i  134 (262)
                              |+   .+++.++.++|| |||.|.+
T Consensus        78 LGRYGDPidp~Gdl~~m~~i~~vLK-~GG~L~l  109 (177)
T PF03269_consen   78 LGRYGDPIDPIGDLRAMAKIKCVLK-PGGLLFL  109 (177)
T ss_pred             ccccCCCCCccccHHHHHHHHHhhc-cCCeEEE
Confidence                    22   337889999999 9999998

>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases

Probab=89.69  E-value=4.7  Score=34.67  Aligned_cols=95  Identities=12%  Similarity=0.084  Sum_probs=60.5

Q ss_pred             CCCeEEEEcC-c-ccHhHHHHHh-hCCeEEEEcCCHHHHHHHhcCCCceEEeC-CCCchhhhhhccCCCCceeeEEEccc
Q 037961           33 KRNLAWDVGT-R-SGQAAASLAQ-IYQHVIATDTSPKQLKFAIKLPNIRYQLT-PTMSITELEQNVATQSSVDLVTIASA  108 (262)
Q Consensus        33 ~~~~vlDvGc-G-~G~~~~~l~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~V~~~~~  108 (262)
                      .+.+||=.|+ | .|..+..+++ .|.+|++++.+++..+.+++. ++..... +......+..+  ....+|+|+-...
T Consensus       146 ~~~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~-g~~~v~~~~~~~~~~~~~~--~~~~~d~vld~~g  222 (326)
T cd08289         146 EQGPVLVTGATGGVGSLAVSILAKLGYEVVASTGKADAADYLKKL-GAKEVIPREELQEESIKPL--EKQRWAGAVDPVG  222 (326)
T ss_pred             CCCEEEEEcCCchHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHc-CCCEEEcchhHHHHHHHhh--ccCCcCEEEECCc
Confidence            3567788887 3 3666666666 488999999999988888764 2322221 11111112222  2346898874322


Q ss_pred             cccCChhHHHHHHHHhhcCCCeEEEEEec
Q 037961          109 LHWFDLPQFYKQVKWVLKKPSGVIAAWTY  137 (262)
Q Consensus       109 ~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~  137 (262)
                            ...+.+..+.|+ ++|+++.+..
T Consensus       223 ------~~~~~~~~~~l~-~~G~~i~~g~  244 (326)
T cd08289         223 ------GKTLAYLLSTLQ-YGGSVAVSGL  244 (326)
T ss_pred             ------HHHHHHHHHHhh-cCCEEEEEee
Confidence                  246788999999 9999998664

yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH

>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase

Probab=89.67  E-value=5.6  Score=35.06  Aligned_cols=99  Identities=15%  Similarity=0.107  Sum_probs=61.0

Q ss_pred             CCCCeEEEEcCc-ccHhHHHHHhh-CCe-EEEEcCCHHHHHHHhcCCCceEEeCCCCch-hhhhhccCCCCceeeEEEcc
Q 037961           32 PKRNLAWDVGTR-SGQAAASLAQI-YQH-VIATDTSPKQLKFAIKLPNIRYQLTPTMSI-TELEQNVATQSSVDLVTIAS  107 (262)
Q Consensus        32 ~~~~~vlDvGcG-~G~~~~~l~~~-~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~D~V~~~~  107 (262)
                      .++.+||-.|+| .|..+..+++. |.+ |++++.++...+.+++..-..++....... ..+..+ .+...+|+|+...
T Consensus       181 ~~g~~vLI~g~g~vG~a~i~lak~~G~~~Vi~~~~~~~~~~~~~~~g~~~vv~~~~~~~~~~l~~~-~~~~~vd~vld~~  259 (363)
T cd08279         181 RPGDTVAVIGCGGVGLNAIQGARIAGASRIIAVDPVPEKLELARRFGATHTVNASEDDAVEAVRDL-TDGRGADYAFEAV  259 (363)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHhCCeEEeCCCCccHHHHHHHH-cCCCCCCEEEEcC
Confidence            466777777876 36666666664 775 999999998888776542112222211111 112122 1345699888432


Q ss_pred             ccccCChhHHHHHHHHhhcCCCeEEEEEec
Q 037961          108 ALHWFDLPQFYKQVKWVLKKPSGVIAAWTY  137 (262)
Q Consensus       108 ~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~  137 (262)
                      .     ....+.++.+.|+ ++|+++.+..
T Consensus       260 ~-----~~~~~~~~~~~l~-~~G~~v~~g~  283 (363)
T cd08279         260 G-----RAATIRQALAMTR-KGGTAVVVGM  283 (363)
T ss_pred             C-----ChHHHHHHHHHhh-cCCeEEEEec
Confidence            2     1357789999999 9999987654

Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me

>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase

Probab=89.63  E-value=4.7  Score=35.20  Aligned_cols=95  Identities=14%  Similarity=0.022  Sum_probs=59.6

Q ss_pred             CCCeEEEEcCcc-cHhHHHHHhh-CC-eEEEEcCCHHHHHHHhcCCCceEE-eCCCCch-hhhhhccCCCCceeeEEEcc
Q 037961           33 KRNLAWDVGTRS-GQAAASLAQI-YQ-HVIATDTSPKQLKFAIKLPNIRYQ-LTPTMSI-TELEQNVATQSSVDLVTIAS  107 (262)
Q Consensus        33 ~~~~vlDvGcG~-G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~D~V~~~~  107 (262)
                      ++.+||-.|+|. |..+..+++. |. .|++++.++...+.+++.. +... ....... ..+.... .. .+|+|+...
T Consensus       175 ~~~~vlI~g~g~vg~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~-~~-~~d~vid~~  251 (350)
T cd08240         175 ADEPVVIIGAGGLGLMALALLKALGPANIIVVDIDEAKLEAAKAAG-ADVVVNGSDPDAAKRIIKAA-GG-GVDAVIDFV  251 (350)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHhC-CcEEecCCCccHHHHHHHHh-CC-CCcEEEECC
Confidence            567778788763 6666666664 76 7899999998888876542 2222 2211111 1111121 22 689998542


Q ss_pred             ccccCChhHHHHHHHHhhcCCCeEEEEEe
Q 037961          108 ALHWFDLPQFYKQVKWVLKKPSGVIAAWT  136 (262)
Q Consensus       108 ~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~  136 (262)
                      .     ....+.++.+.|+ ++|+++.+.
T Consensus       252 g-----~~~~~~~~~~~l~-~~g~~v~~g  274 (350)
T cd08240         252 N-----NSATASLAFDILA-KGGKLVLVG  274 (350)
T ss_pred             C-----CHHHHHHHHHHhh-cCCeEEEEC
Confidence            2     2457899999999 999998754

6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy

>PRK05396 tdh L-threonine 3-dehydrogenase; Validated

Probab=89.62  E-value=5.8  Score=34.51  Aligned_cols=99  Identities=20%  Similarity=0.170  Sum_probs=60.4

Q ss_pred             CCCeEEEEcCcc-cHhHHHHHhh-CC-eEEEEcCCHHHHHHHhcCCCceEEeCCCCch-hhhhhccCCCCceeeEEEccc
Q 037961           33 KRNLAWDVGTRS-GQAAASLAQI-YQ-HVIATDTSPKQLKFAIKLPNIRYQLTPTMSI-TELEQNVATQSSVDLVTIASA  108 (262)
Q Consensus        33 ~~~~vlDvGcG~-G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~D~V~~~~~  108 (262)
                      ++.+||-.|+|. |..+..+++. |. +|++++.++.-.+.+++...-.++....-.. .....+. ....+|+|+-...
T Consensus       163 ~g~~vlV~~~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~-~~~~~d~v~d~~g  241 (341)
T PRK05396        163 VGEDVLITGAGPIGIMAAAVAKHVGARHVVITDVNEYRLELARKMGATRAVNVAKEDLRDVMAELG-MTEGFDVGLEMSG  241 (341)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhCCcEEecCccccHHHHHHHhc-CCCCCCEEEECCC
Confidence            556666677764 6666667664 66 6889998888777766542212221111011 1112221 3456899985322


Q ss_pred             cccCChhHHHHHHHHhhcCCCeEEEEEecC
Q 037961          109 LHWFDLPQFYKQVKWVLKKPSGVIAAWTYT  138 (262)
Q Consensus       109 ~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~~  138 (262)
                           ....++.+.+.|+ ++|+++.+...
T Consensus       242 -----~~~~~~~~~~~l~-~~G~~v~~g~~  265 (341)
T PRK05396        242 -----APSAFRQMLDNMN-HGGRIAMLGIP  265 (341)
T ss_pred             -----CHHHHHHHHHHHh-cCCEEEEEecC
Confidence                 2457888999999 99999987643

>TIGR00692 tdh L-threonine 3-dehydrogenase

Probab=89.58  E-value=6.7  Score=34.11  Aligned_cols=99  Identities=18%  Similarity=0.156  Sum_probs=58.9

Q ss_pred             CCCCeEEEEcCc-ccHhHHHHHhh-CCe-EEEEcCCHHHHHHHhcCCCceEEeCCCCch-hhhhhccCCCCceeeEEEcc
Q 037961           32 PKRNLAWDVGTR-SGQAAASLAQI-YQH-VIATDTSPKQLKFAIKLPNIRYQLTPTMSI-TELEQNVATQSSVDLVTIAS  107 (262)
Q Consensus        32 ~~~~~vlDvGcG-~G~~~~~l~~~-~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~D~V~~~~  107 (262)
                      .++.++|-.|+| .|..+..+++. |.+ |++++-++.-.+.+++..--.++....... ..+..+ .....+|+|+-..
T Consensus       160 ~~g~~vlI~~~g~vg~~a~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~l~~~-~~~~~~d~vld~~  238 (340)
T TIGR00692       160 ISGKSVLVTGAGPIGLMAIAVAKASGAYPVIVSDPNEYRLELAKKMGATYVVNPFKEDVVKEVADL-TDGEGVDVFLEMS  238 (340)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCcEEEcccccCHHHHHHHh-cCCCCCCEEEECC
Confidence            455666667765 36666666664 776 889988888777776543212221111001 111112 1345689998541


Q ss_pred             ccccCChhHHHHHHHHhhcCCCeEEEEEec
Q 037961          108 ALHWFDLPQFYKQVKWVLKKPSGVIAAWTY  137 (262)
Q Consensus       108 ~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~  137 (262)
                      .     ....+.++.+.|+ ++|+++.+..
T Consensus       239 g-----~~~~~~~~~~~l~-~~g~~v~~g~  262 (340)
T TIGR00692       239 G-----APKALEQGLQAVT-PGGRVSLLGL  262 (340)
T ss_pred             C-----CHHHHHHHHHhhc-CCCEEEEEcc
Confidence            1     2457889999999 9999987553

E. coli His-90 modulates substrate specificity and is believed part of the active site.

>cd05284 arabinose_DH_like D-arabinose dehydrogenase

Probab=89.39  E-value=6.2  Score=34.21  Aligned_cols=99  Identities=18%  Similarity=0.133  Sum_probs=60.5

Q ss_pred             CCCCeEEEEcCcc-cHhHHHHHhh-C-CeEEEEcCCHHHHHHHhcCCCceEEeCCCCchhhhhhccCCCCceeeEEEccc
Q 037961           32 PKRNLAWDVGTRS-GQAAASLAQI-Y-QHVIATDTSPKQLKFAIKLPNIRYQLTPTMSITELEQNVATQSSVDLVTIASA  108 (262)
Q Consensus        32 ~~~~~vlDvGcG~-G~~~~~l~~~-~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~  108 (262)
                      .++.+||=.|+|+ |..+..+++. + .+|++++.+++..+.+++..-..++.........+..+ .+...+|+|+-...
T Consensus       166 ~~~~~vlI~g~~~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~-~~~~~~dvvld~~g  244 (340)
T cd05284         166 DPGSTVVVIGVGGLGHIAVQILRALTPATVIAVDRSEEALKLAERLGADHVLNASDDVVEEVREL-TGGRGADAVIDFVG  244 (340)
T ss_pred             CCCCEEEEEcCcHHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHhCCcEEEcCCccHHHHHHHH-hCCCCCCEEEEcCC
Confidence            4667778788654 5555556654 6 79999999988888776543112222111001112222 13346999985322


Q ss_pred             cccCChhHHHHHHHHhhcCCCeEEEEEec
Q 037961          109 LHWFDLPQFYKQVKWVLKKPSGVIAAWTY  137 (262)
Q Consensus       109 ~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~  137 (262)
                           ....+.++.+.|+ ++|+++.+..
T Consensus       245 -----~~~~~~~~~~~l~-~~g~~i~~g~  267 (340)
T cd05284         245 -----SDETLALAAKLLA-KGGRYVIVGY  267 (340)
T ss_pred             -----CHHHHHHHHHHhh-cCCEEEEEcC
Confidence                 1357888999999 9999987653

This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d

>cd08241 QOR1 Quinone oxidoreductase (QOR)

Probab=89.38  E-value=6.7  Score=33.22  Aligned_cols=99  Identities=18%  Similarity=0.143  Sum_probs=60.3

Q ss_pred             CCCCCeEEEEcC--cccHhHHHHHh-hCCeEEEEcCCHHHHHHHhcCCCceEEeCCCCch-hhhhhccCCCCceeeEEEc
Q 037961           31 TPKRNLAWDVGT--RSGQAAASLAQ-IYQHVIATDTSPKQLKFAIKLPNIRYQLTPTMSI-TELEQNVATQSSVDLVTIA  106 (262)
Q Consensus        31 ~~~~~~vlDvGc--G~G~~~~~l~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~D~V~~~  106 (262)
                      ..++..|+-.||  +.|..+..++. .|.++++++.++...+.+++..--.......... ..+... .....+|+++..
T Consensus       137 ~~~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i~~~-~~~~~~d~v~~~  215 (323)
T cd08241         137 LQPGETVLVLGAAGGVGLAAVQLAKALGARVIAAASSEEKLALARALGADHVIDYRDPDLRERVKAL-TGGRGVDVVYDP  215 (323)
T ss_pred             CCCCCEEEEEcCCchHHHHHHHHHHHhCCEEEEEeCCHHHHHHHHHcCCceeeecCCccHHHHHHHH-cCCCCcEEEEEC
Confidence            356788899998  24666666665 4889999999998888776542111121111011 111122 133468998854


Q ss_pred             cccccCChhHHHHHHHHhhcCCCeEEEEEec
Q 037961          107 SALHWFDLPQFYKQVKWVLKKPSGVIAAWTY  137 (262)
Q Consensus       107 ~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~  137 (262)
                      ..      ...+..+.+.++ ++|+++....
T Consensus       216 ~g------~~~~~~~~~~~~-~~g~~v~~~~  239 (323)
T cd08241         216 VG------GDVFEASLRSLA-WGGRLLVIGF  239 (323)
T ss_pred             cc------HHHHHHHHHhhc-cCCEEEEEcc
Confidence            32      235667788999 9999887543

QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic

>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]

Probab=89.23  E-value=1.5  Score=38.55  Aligned_cols=74  Identities=16%  Similarity=0.099  Sum_probs=50.7

Q ss_pred             CCeEEEEcCcccHhHHHHHhhCCe-EEEEcCCHHHHHHHhcC-CCceEEeCC--CCchhhhhhccCCCCceeeEEEcccc
Q 037961           34 RNLAWDVGTRSGQAAASLAQIYQH-VIATDTSPKQLKFAIKL-PNIRYQLTP--TMSITELEQNVATQSSVDLVTIASAL  109 (262)
Q Consensus        34 ~~~vlDvGcG~G~~~~~l~~~~~~-v~~vD~s~~~~~~a~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~D~V~~~~~~  109 (262)
                      ...++|+-||.|.+..-+...|.+ +.++|+++..++.-+.+ +.......+  ++.   .+.+  ....+|+++....+
T Consensus         3 ~~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~~n~~~~~~~~~di~~~~---~~~~--~~~~~DvligGpPC   77 (328)
T COG0270           3 KMKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYKANFPHGDIILGDIKELD---GEAL--RKSDVDVLIGGPPC   77 (328)
T ss_pred             CceEEeeccCCchHHHHHHhcCCeEEEEEecCHHHHHHHHHhCCCCceeechHhhcC---hhhc--cccCCCEEEeCCCC
Confidence            356899999999999999888876 55999999999876654 334444444  111   1111  12279999998777


Q ss_pred             ccC
Q 037961          110 HWF  112 (262)
Q Consensus       110 ~~~  112 (262)
                      +-+
T Consensus        78 Q~F   80 (328)
T COG0270          78 QDF   80 (328)
T ss_pred             cch
Confidence            633

>PTZ00357 methyltransferase; Provisional

Probab=89.20  E-value=1.1  Score=42.94  Aligned_cols=127  Identities=16%  Similarity=0.155  Sum_probs=70.7

Q ss_pred             hhhHHHHHHHHhhCCCChHHHHHHHHh---------------------hCC------CCCeEEEEcCcccHhHHHHHhh-
Q 037961            3 ELFIKQANLYAVARPNYPKELFKLIAS---------------------KTP------KRNLAWDVGTRSGQAAASLAQI-   54 (262)
Q Consensus         3 ~~F~~~a~~Y~~~rp~yp~~~~~~l~~---------------------~~~------~~~~vlDvGcG~G~~~~~l~~~-   54 (262)
                      +.|+++.-.|+++.-..-..+.++...                     ..+      ...+|+-+|+|-|-+.....+. 
T Consensus       643 EVFEKDpVKYdqYE~AI~kAL~Dw~~~~~~~~~~~~ns~~~~k~~~mdrvp~~~~d~~~vVImVVGAGRGPLVdraLrAa  722 (1072)
T PTZ00357        643 EVFERDARKYRQYREAVFHYVRDWYAAGAEQQHAHQNSEFFAKHGVMQRVPVPSPDERTLHLVLLGCGRGPLIDECLHAV  722 (1072)
T ss_pred             HHHcCCcHHHHHHHHHHHHHHHHhhhccccccccccccccccccccccccccccCCCceEEEEEEcCCccHHHHHHHHHH
Confidence            678999999998753333333332210                     010      1135899999999876655432 


Q ss_pred             ---C--CeEEEEcCCHHHHHHHh-c--C----C--------CceEEeCC--CCchhhh-h--hccCCCCceeeEEEcccc
Q 037961           55 ---Y--QHVIATDTSPKQLKFAI-K--L----P--------NIRYQLTP--TMSITEL-E--QNVATQSSVDLVTIASAL  109 (262)
Q Consensus        55 ---~--~~v~~vD~s~~~~~~a~-~--~----~--------~~~~~~~~--~~~~~~~-~--~~~~~~~~~D~V~~~~~~  109 (262)
                         +  .+|++||-++..+.... +  +    .        .++++..|  .+..... .  ..|..-+++|+||+- .|
T Consensus       723 k~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~s~~~P~~~gKaDIVVSE-LL  801 (1072)
T PTZ00357        723 SALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENGSLTLPADFGLCDLIVSE-LL  801 (1072)
T ss_pred             HHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccccccccccccccceehHh-hh
Confidence               2  47999999966332221 1  1    1        26777766  3322110 0  112222479999872 23


Q ss_pred             ccC-Ch---hHHHHHHHHhhcCC----CeE
Q 037961          110 HWF-DL---PQFYKQVKWVLKKP----SGV  131 (262)
Q Consensus       110 ~~~-d~---~~~l~~~~r~Lk~p----gG~  131 (262)
                      --| |-   .+.|..+.+.|| +    +|+
T Consensus       802 GSFGDNELSPECLDGaQrfLK-diqhsdGI  830 (1072)
T PTZ00357        802 GSLGDNELSPECLEAFHAQLE-DIQLSRGI  830 (1072)
T ss_pred             cccccccCCHHHHHHHHHhhh-hhcccccc
Confidence            334 32   247777888887 6    775

>cd05281 TDH Threonine dehydrogenase

Probab=89.15  E-value=5.3  Score=34.79  Aligned_cols=98  Identities=22%  Similarity=0.210  Sum_probs=58.6

Q ss_pred             CCCCeEEEEcCcc-cHhHHHHHhh-CC-eEEEEcCCHHHHHHHhcCCCceEEeCCCCchhhhhhccCCCCceeeEEEccc
Q 037961           32 PKRNLAWDVGTRS-GQAAASLAQI-YQ-HVIATDTSPKQLKFAIKLPNIRYQLTPTMSITELEQNVATQSSVDLVTIASA  108 (262)
Q Consensus        32 ~~~~~vlDvGcG~-G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~  108 (262)
                      .++.+||-.|+|. |.++..+++. |. +|++++-++.-...+++..--.++.........+..+ ...+.+|+|+.+..
T Consensus       162 ~~g~~vlV~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~vd~vld~~g  240 (341)
T cd05281         162 VSGKSVLITGCGPIGLMAIAVAKAAGASLVIASDPNPYRLELAKKMGADVVINPREEDVVEVKSV-TDGTGVDVVLEMSG  240 (341)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCcceeeCcccccHHHHHHH-cCCCCCCEEEECCC
Confidence            4566666677764 6677777764 66 6889888877766666542211221111001112222 13456899985322


Q ss_pred             cccCChhHHHHHHHHhhcCCCeEEEEEe
Q 037961          109 LHWFDLPQFYKQVKWVLKKPSGVIAAWT  136 (262)
Q Consensus       109 ~~~~d~~~~l~~~~r~Lk~pgG~l~i~~  136 (262)
                           ....+.++.+.|+ ++|+++...
T Consensus       241 -----~~~~~~~~~~~l~-~~G~~v~~g  262 (341)
T cd05281         241 -----NPKAIEQGLKALT-PGGRVSILG  262 (341)
T ss_pred             -----CHHHHHHHHHHhc-cCCEEEEEc
Confidence                 2356788999999 999998754

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=89.14  E-value=6.6  Score=28.23  Aligned_cols=87  Identities=17%  Similarity=0.142  Sum_probs=55.2

Q ss_pred             CcccHhHHHHHh----hCCeEEEEcCCHHHHHHHhcCCCceEEeCCCCchhhhhhccCCCCceeeEEEccccccCChhH-
Q 037961           42 TRSGQAAASLAQ----IYQHVIATDTSPKQLKFAIKLPNIRYQLTPTMSITELEQNVATQSSVDLVTIASALHWFDLPQ-  116 (262)
Q Consensus        42 cG~G~~~~~l~~----~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~~~~d~~~-  116 (262)
                      ||.|..+..+++    .+.+|+.+|.+++.++.++.. .+.++.+|..+....+...+  .+.|.|++...    +... 
T Consensus         4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~-~~~~i~gd~~~~~~l~~a~i--~~a~~vv~~~~----~d~~n   76 (116)
T PF02254_consen    4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREE-GVEVIYGDATDPEVLERAGI--EKADAVVILTD----DDEEN   76 (116)
T ss_dssp             ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT-TSEEEES-TTSHHHHHHTTG--GCESEEEEESS----SHHHH
T ss_pred             EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc-ccccccccchhhhHHhhcCc--cccCEEEEccC----CHHHH
Confidence            566677777655    345899999999999988865 47888888333334444443  45788876533    2222 


Q ss_pred             -HHHHHHHhhcCCCeEEEEEe
Q 037961          117 -FYKQVKWVLKKPSGVIAAWT  136 (262)
Q Consensus       117 -~l~~~~r~Lk~pgG~l~i~~  136 (262)
                       .+....+-+. |...+++-.
T Consensus        77 ~~~~~~~r~~~-~~~~ii~~~   96 (116)
T PF02254_consen   77 LLIALLARELN-PDIRIIARV   96 (116)
T ss_dssp             HHHHHHHHHHT-TTSEEEEEE
T ss_pred             HHHHHHHHHHC-CCCeEEEEE
Confidence             4455666677 777777633

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>KOG4058 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.14  E-value=0.56  Score=35.97  Aligned_cols=41  Identities=12%  Similarity=0.226  Sum_probs=35.7

Q ss_pred             CCCeEEEEcCcccHhHHHHHhhC-CeEEEEcCCHHHHHHHhc
Q 037961           33 KRNLAWDVGTRSGQAAASLAQIY-QHVIATDTSPKQLKFAIK   73 (262)
Q Consensus        33 ~~~~vlDvGcG~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~   73 (262)
                      +....+|+|.|.|......++.| ..-+|++++|-.+.+++-
T Consensus        72 ~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl  113 (199)
T KOG4058|consen   72 PKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRL  113 (199)
T ss_pred             CCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHH
Confidence            44667999999999999998887 578999999999998874

>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]

Probab=88.88  E-value=2.9  Score=37.61  Aligned_cols=101  Identities=16%  Similarity=0.118  Sum_probs=65.7

Q ss_pred             CCCeEEEEcCcccHhHHHHHhh---CCeEEEEcCCHHHHHHHhcC------CCceEEeCCCCchhhhhhccCCCCceeeE
Q 037961           33 KRNLAWDVGTRSGQAAASLAQI---YQHVIATDTSPKQLKFAIKL------PNIRYQLTPTMSITELEQNVATQSSVDLV  103 (262)
Q Consensus        33 ~~~~vlDvGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~D~V  103 (262)
                      ++.+|||..+-+|.=|.++|..   -..|++.|.+..-+...+.+      .+......|..   .+..-.++. +||-|
T Consensus       241 ~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~---ef~~~~~~~-~fDRV  316 (460)
T KOG1122|consen  241 PGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGR---EFPEKEFPG-SFDRV  316 (460)
T ss_pred             CCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCceEEEccCcc---cccccccCc-cccee
Confidence            7789999999999888888774   34799999999888876642      34344444310   010011333 89999


Q ss_pred             EEcc------------ccccC-C----------hhHHHHHHHHhhcCCCeEEEEEecC
Q 037961          104 TIAS------------ALHWF-D----------LPQFYKQVKWVLKKPSGVIAAWTYT  138 (262)
Q Consensus       104 ~~~~------------~~~~~-d----------~~~~l~~~~r~Lk~pgG~l~i~~~~  138 (262)
                      +-.-            ++-|. .          ..+++-.+..+++ +||+|+-.+++
T Consensus       317 LLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~-~GGvLVYSTCS  373 (460)
T KOG1122|consen  317 LLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVK-AGGVLVYSTCS  373 (460)
T ss_pred             eecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhcc-CCcEEEEEeee
Confidence            7421            12222 1          2336678889999 99999986655

>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase

Probab=88.83  E-value=6.1  Score=35.65  Aligned_cols=97  Identities=21%  Similarity=0.249  Sum_probs=60.3

Q ss_pred             CCCCeEEEEc-Cc-ccHhHHHHHhh-CC---eEEEEcCCHHHHHHHhcC-C------Cce--EEeCCC-Cch-hhhhhcc
Q 037961           32 PKRNLAWDVG-TR-SGQAAASLAQI-YQ---HVIATDTSPKQLKFAIKL-P------NIR--YQLTPT-MSI-TELEQNV   94 (262)
Q Consensus        32 ~~~~~vlDvG-cG-~G~~~~~l~~~-~~---~v~~vD~s~~~~~~a~~~-~------~~~--~~~~~~-~~~-~~~~~~~   94 (262)
                      .++.+||=+| +| .|..+.++++. |.   +|+++|.++.-++.+++. .      +..  ++.... -.. .....+.
T Consensus       174 ~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~~~Ga~~~~i~~~~~~~~~~~v~~~t  253 (410)
T cd08238         174 KPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAASRGIELLYVNPATIDDLHATLMELT  253 (410)
T ss_pred             CCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhccccccccCceEEEECCCccccHHHHHHHHh
Confidence            4667788887 46 48888888775 32   799999999999988874 1      222  221110 000 1111111


Q ss_pred             CCCCceeeEEEccccccCChhHHHHHHHHhhcCCCeEEEEE
Q 037961           95 ATQSSVDLVTIASALHWFDLPQFYKQVKWVLKKPSGVIAAW  135 (262)
Q Consensus        95 ~~~~~~D~V~~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~  135 (262)
                       ....+|+|+....     ....+..+.+.++ ++|.++++
T Consensus       254 -~g~g~D~vid~~g-----~~~~~~~a~~~l~-~~G~~v~~  287 (410)
T cd08238         254 -GGQGFDDVFVFVP-----VPELVEEADTLLA-PDGCLNFF  287 (410)
T ss_pred             -CCCCCCEEEEcCC-----CHHHHHHHHHHhc-cCCeEEEE
Confidence             2346898885322     2467888999999 88877664

L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found

>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR)

Probab=88.42  E-value=8.5  Score=32.71  Aligned_cols=95  Identities=21%  Similarity=0.180  Sum_probs=61.9

Q ss_pred             CCCCeEEEEcC--cccHhHHHHHhh-CCeEEEEcCCHHHHHHHhcCCCceEEeCCCCch-hhhhhccCCCCceeeEEEcc
Q 037961           32 PKRNLAWDVGT--RSGQAAASLAQI-YQHVIATDTSPKQLKFAIKLPNIRYQLTPTMSI-TELEQNVATQSSVDLVTIAS  107 (262)
Q Consensus        32 ~~~~~vlDvGc--G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~D~V~~~~  107 (262)
                      .++..||=.|+  +.|..+..+++. |.+|+++..+++..+.+++. ++.......-.. ..+..+   ...+|+|+...
T Consensus       141 ~~g~~vlV~ga~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~i~~~---~~~~d~vl~~~  216 (320)
T cd08243         141 QPGDTLLIRGGTSSVGLAALKLAKALGATVTATTRSPERAALLKEL-GADEVVIDDGAIAEQLRAA---PGGFDKVLELV  216 (320)
T ss_pred             CCCCEEEEEcCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhc-CCcEEEecCccHHHHHHHh---CCCceEEEECC
Confidence            46678888876  357777777764 88999999999888887654 222221111001 112222   45699998543


Q ss_pred             ccccCChhHHHHHHHHhhcCCCeEEEEEec
Q 037961          108 ALHWFDLPQFYKQVKWVLKKPSGVIAAWTY  137 (262)
Q Consensus       108 ~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~  137 (262)
                      .      ...+.++.+.|+ ++|+++.+..
T Consensus       217 ~------~~~~~~~~~~l~-~~g~~v~~g~  239 (320)
T cd08243         217 G------TATLKDSLRHLR-PGGIVCMTGL  239 (320)
T ss_pred             C------hHHHHHHHHHhc-cCCEEEEEcc
Confidence            2      246888899999 9999987553

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function

Probab=88.32  E-value=0.73  Score=38.75  Aligned_cols=40  Identities=13%  Similarity=0.072  Sum_probs=30.2

Q ss_pred             CCeEEEEcCcccHhHHHHHhh----------CCeEEEEcCCHHHHHHHhc
Q 037961           34 RNLAWDVGTRSGQAAASLAQI----------YQHVIATDTSPKQLKFAIK   73 (262)
Q Consensus        34 ~~~vlDvGcG~G~~~~~l~~~----------~~~v~~vD~s~~~~~~a~~   73 (262)
                      .-.|+|+|+|+|.++..+++.          ..+++-||+||.+.+.-++
T Consensus        19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~   68 (252)
T PF02636_consen   19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKE   68 (252)
T ss_dssp             -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHH
T ss_pred             CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHH
Confidence            368999999999999988763          2479999999999876553

; PDB: 4F3N_A 1ZKD_B.

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=88.28  E-value=2.2  Score=36.98  Aligned_cols=94  Identities=19%  Similarity=0.154  Sum_probs=66.0

Q ss_pred             CCeEEEEcCcc-cHhHHHHHh-hCCeEEEEcCCHHHHHHHhcC--CCceEEeCCCCchhhhhhccCCCCceeeEEEcccc
Q 037961           34 RNLAWDVGTRS-GQAAASLAQ-IYQHVIATDTSPKQLKFAIKL--PNIRYQLTPTMSITELEQNVATQSSVDLVTIASAL  109 (262)
Q Consensus        34 ~~~vlDvGcG~-G~~~~~l~~-~~~~v~~vD~s~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~  109 (262)
                      +..|.=+|-|. |..+..++- .+++|+-+|.|.+-+++....  .++...-..   ...++.   .-.+.|+|+..--+
T Consensus       168 ~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~rv~~~~st---~~~iee---~v~~aDlvIgaVLI  241 (371)
T COG0686         168 PAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGGRVHTLYST---PSNIEE---AVKKADLVIGAVLI  241 (371)
T ss_pred             CccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhCceeEEEEcC---HHHHHH---HhhhccEEEEEEEe
Confidence            34567788775 666666654 589999999999988877654  334444332   112222   23568999988777


Q ss_pred             ccC-ChhHHHHHHHHhhcCCCeEEEE
Q 037961          110 HWF-DLPQFYKQVKWVLKKPSGVIAA  134 (262)
Q Consensus       110 ~~~-d~~~~l~~~~r~Lk~pgG~l~i  134 (262)
                      .-- +|.-+.+++.+.|| ||++++=
T Consensus       242 pgakaPkLvt~e~vk~Mk-pGsVivD  266 (371)
T COG0686         242 PGAKAPKLVTREMVKQMK-PGSVIVD  266 (371)
T ss_pred             cCCCCceehhHHHHHhcC-CCcEEEE
Confidence            777 67778999999999 9999873

>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=88.24  E-value=7.1  Score=33.50  Aligned_cols=88  Identities=17%  Similarity=0.232  Sum_probs=58.6

Q ss_pred             CCCCeEEEEcCcc-cHhHHHHHh-hCCeEEEEcCCHHHHHHHhcCCCceEEeCCCCchhhhhhccCCCCceeeEEEcccc
Q 037961           32 PKRNLAWDVGTRS-GQAAASLAQ-IYQHVIATDTSPKQLKFAIKLPNIRYQLTPTMSITELEQNVATQSSVDLVTIASAL  109 (262)
Q Consensus        32 ~~~~~vlDvGcG~-G~~~~~l~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~  109 (262)
                      .++.+||=.|+|. |..+..+++ .|.++++++.+++..+.+++. ++......       ... .....+|+|+-..  
T Consensus       154 ~~g~~vlV~g~g~vg~~~~q~a~~~G~~vi~~~~~~~~~~~~~~~-g~~~~~~~-------~~~-~~~~~~d~vid~~--  222 (319)
T cd08242         154 TPGDKVAVLGDGKLGLLIAQVLALTGPDVVLVGRHSEKLALARRL-GVETVLPD-------EAE-SEGGGFDVVVEAT--  222 (319)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHc-CCcEEeCc-------ccc-ccCCCCCEEEECC--
Confidence            4667777777653 555555555 488999999999999988874 33332211       000 1345699998532  


Q ss_pred             ccCChhHHHHHHHHhhcCCCeEEEE
Q 037961          110 HWFDLPQFYKQVKWVLKKPSGVIAA  134 (262)
Q Consensus       110 ~~~d~~~~l~~~~r~Lk~pgG~l~i  134 (262)
                         .....+..+.+.|+ ++|++++
T Consensus       223 ---g~~~~~~~~~~~l~-~~g~~v~  243 (319)
T cd08242         223 ---GSPSGLELALRLVR-PRGTVVL  243 (319)
T ss_pred             ---CChHHHHHHHHHhh-cCCEEEE
Confidence               12457788889999 9999987

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta

>cd05286 QOR2 Quinone oxidoreductase (QOR)

Probab=88.12  E-value=9.4  Score=32.21  Aligned_cols=97  Identities=13%  Similarity=0.079  Sum_probs=61.3

Q ss_pred             CCCCeEEEEcC--cccHhHHHHHhh-CCeEEEEcCCHHHHHHHhcCCCceEE-eCCCCch-hhhhhccCCCCceeeEEEc
Q 037961           32 PKRNLAWDVGT--RSGQAAASLAQI-YQHVIATDTSPKQLKFAIKLPNIRYQ-LTPTMSI-TELEQNVATQSSVDLVTIA  106 (262)
Q Consensus        32 ~~~~~vlDvGc--G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~D~V~~~  106 (262)
                      .++..||=.|+  +.|..+..+++. |.++++++.++...+.+++.. +... ....... ..+..+ .....+|+|+..
T Consensus       135 ~~g~~vlI~g~~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~-~~~~~~d~vl~~  212 (320)
T cd05286         135 KPGDTVLVHAAAGGVGLLLTQWAKALGATVIGTVSSEEKAELARAAG-ADHVINYRDEDFVERVREI-TGGRGVDVVYDG  212 (320)
T ss_pred             CCCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHCC-CCEEEeCCchhHHHHHHHH-cCCCCeeEEEEC
Confidence            46778888884  357777777664 889999999999888886542 3222 2211011 112222 134469999854


Q ss_pred             cccccCChhHHHHHHHHhhcCCCeEEEEEec
Q 037961          107 SALHWFDLPQFYKQVKWVLKKPSGVIAAWTY  137 (262)
Q Consensus       107 ~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~  137 (262)
                      ..      ...+..+.+.|+ ++|+++.+..
T Consensus       213 ~~------~~~~~~~~~~l~-~~g~~v~~g~  236 (320)
T cd05286         213 VG------KDTFEGSLDSLR-PRGTLVSFGN  236 (320)
T ss_pred             CC------cHhHHHHHHhhc-cCcEEEEEec
Confidence            32      246778889999 9999887553

Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone

>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD)

Probab=88.03  E-value=7.6  Score=33.45  Aligned_cols=89  Identities=13%  Similarity=0.074  Sum_probs=57.3

Q ss_pred             CCCCeEEEEcCcc-cHhHHHHHh-hCCeEEEEcCCHHHHHHHhcCCCceEEeCCCCchhhhhhccCCCCceeeEEEcccc
Q 037961           32 PKRNLAWDVGTRS-GQAAASLAQ-IYQHVIATDTSPKQLKFAIKLPNIRYQLTPTMSITELEQNVATQSSVDLVTIASAL  109 (262)
Q Consensus        32 ~~~~~vlDvGcG~-G~~~~~l~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~  109 (262)
                      .++..+|=.|||. |..+..+++ .+.++++++.++...+.+++. ++......       ...  +...+|+++.... 
T Consensus       166 ~~~~~vlV~g~g~vg~~~~~la~~~g~~v~~~~~~~~~~~~~~~~-g~~~~~~~-------~~~--~~~~vD~vi~~~~-  234 (329)
T cd08298         166 KPGQRLGLYGFGASAHLALQIARYQGAEVFAFTRSGEHQELAREL-GADWAGDS-------DDL--PPEPLDAAIIFAP-  234 (329)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEcCChHHHHHHHHh-CCcEEecc-------Ccc--CCCcccEEEEcCC-
Confidence            4566666677764 555555555 488999999998888877654 23222111       000  2345888874311 


Q ss_pred             ccCChhHHHHHHHHhhcCCCeEEEEEe
Q 037961          110 HWFDLPQFYKQVKWVLKKPSGVIAAWT  136 (262)
Q Consensus       110 ~~~d~~~~l~~~~r~Lk~pgG~l~i~~  136 (262)
                          ....++++.+.|+ ++|+++...
T Consensus       235 ----~~~~~~~~~~~l~-~~G~~v~~g  256 (329)
T cd08298         235 ----VGALVPAALRAVK-KGGRVVLAG  256 (329)
T ss_pred             ----cHHHHHHHHHHhh-cCCEEEEEc
Confidence                1357899999999 999999755

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=87.82  E-value=2.9  Score=35.64  Aligned_cols=83  Identities=20%  Similarity=0.157  Sum_probs=52.0

Q ss_pred             EEEEcCcc--cHhHHHHHhhCCeEEEEcCCHHHHHHHhcCCCceEEeCCCCchhhhhhccCCCCceeeEEEccccccCCh
Q 037961           37 AWDVGTRS--GQAAASLAQIYQHVIATDTSPKQLKFAIKLPNIRYQLTPTMSITELEQNVATQSSVDLVTIASALHWFDL  114 (262)
Q Consensus        37 vlDvGcG~--G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~~~~d~  114 (262)
                      |.=||+|.  |.++..|.+.+.+|+++|.+++.++.+.+...+.....      +.+.    -...|+|+.+.....  .
T Consensus         3 I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~~g~~~~~~~------~~~~----~~~aDlVilavp~~~--~   70 (279)
T PRK07417          3 IGIVGLGLIGGSLGLDLRSLGHTVYGVSRRESTCERAIERGLVDEAST------DLSL----LKDCDLVILALPIGL--L   70 (279)
T ss_pred             EEEEeecHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCcccccC------CHhH----hcCCCEEEEcCCHHH--H
Confidence            55578885  56677777788999999999999888775422221111      1111    134799987654322  2


Q ss_pred             hHHHHHHHHhhcCCCeEE
Q 037961          115 PQFYKQVKWVLKKPSGVI  132 (262)
Q Consensus       115 ~~~l~~~~r~Lk~pgG~l  132 (262)
                      .++++++...++ ++-.+
T Consensus        71 ~~~~~~l~~~l~-~~~ii   87 (279)
T PRK07417         71 LPPSEQLIPALP-PEAIV   87 (279)
T ss_pred             HHHHHHHHHhCC-CCcEE
Confidence            346677777777 66433

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=87.50  E-value=3.2  Score=34.30  Aligned_cols=70  Identities=14%  Similarity=0.111  Sum_probs=47.3

Q ss_pred             eEEEEcCcc--cHhHHHHHhhCCeEEEEcCCHHHHHHHhc-CCCceEEeCCCCchhhhhhccCCCCceeeEEEcc
Q 037961           36 LAWDVGTRS--GQAAASLAQIYQHVIATDTSPKQLKFAIK-LPNIRYQLTPTMSITELEQNVATQSSVDLVTIAS  107 (262)
Q Consensus        36 ~vlDvGcG~--G~~~~~l~~~~~~v~~vD~s~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~  107 (262)
                      .++=+|||.  +..+..|.+.|.+|+.+|.+++-++.... ......++++.....-+++.++  ..+|++++..
T Consensus         2 ~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi--~~aD~vva~t   74 (225)
T COG0569           2 KIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGI--DDADAVVAAT   74 (225)
T ss_pred             EEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCC--CcCCEEEEee
Confidence            356678875  34555666779999999999999887433 3466777777333344555543  4589998753

>TIGR00518 alaDH alanine dehydrogenase

Probab=87.36  E-value=2.3  Score=38.02  Aligned_cols=100  Identities=18%  Similarity=0.069  Sum_probs=55.4

Q ss_pred             CCeEEEEcCcc-cHhHHHHHh-hCCeEEEEcCCHHHHHHHhcCCCceEEeCCCCchhhhhhccCCCCceeeEEEcccccc
Q 037961           34 RNLAWDVGTRS-GQAAASLAQ-IYQHVIATDTSPKQLKFAIKLPNIRYQLTPTMSITELEQNVATQSSVDLVTIASALHW  111 (262)
Q Consensus        34 ~~~vlDvGcG~-G~~~~~l~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~~~  111 (262)
                      ...|+=+|+|. |..+...+. .|++|+++|.++.-++.+...-...+.... ....++.+.   -..+|+|+..-.+.-
T Consensus       167 ~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~g~~v~~~~-~~~~~l~~~---l~~aDvVI~a~~~~g  242 (370)
T TIGR00518       167 PGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDAEFGGRIHTRY-SNAYEIEDA---VKRADLLIGAVLIPG  242 (370)
T ss_pred             CceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhcCceeEecc-CCHHHHHHH---HccCCEEEEccccCC
Confidence            45588888884 555555444 488999999998877765432111111100 001122221   135799996543321


Q ss_pred             CC-hhHHHHHHHHhhcCCCeEEEEEecC
Q 037961          112 FD-LPQFYKQVKWVLKKPSGVIAAWTYT  138 (262)
Q Consensus       112 ~d-~~~~l~~~~r~Lk~pgG~l~i~~~~  138 (262)
                      .. +.-+-++..+.++ ||++++-..+.
T Consensus       243 ~~~p~lit~~~l~~mk-~g~vIvDva~d  269 (370)
T TIGR00518       243 AKAPKLVSNSLVAQMK-PGAVIVDVAID  269 (370)
T ss_pred             CCCCcCcCHHHHhcCC-CCCEEEEEecC
Confidence            21 2223466677789 99888754443

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]

Probab=87.06  E-value=0.48  Score=42.48  Aligned_cols=49  Identities=20%  Similarity=0.175  Sum_probs=43.6

Q ss_pred             HHHHhhCCCCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhc
Q 037961           25 KLIASKTPKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIK   73 (262)
Q Consensus        25 ~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~   73 (262)
                      +.+....+++..|-|+-||.|-++..++..++.|++-|.++++++..+.
T Consensus       241 erlsg~fk~gevv~D~FaGvGPfa~Pa~kK~crV~aNDLNpesik~Lk~  289 (495)
T KOG2078|consen  241 ERLSGLFKPGEVVCDVFAGVGPFALPAAKKGCRVYANDLNPESIKWLKA  289 (495)
T ss_pred             HHHhhccCCcchhhhhhcCcCccccchhhcCcEEEecCCCHHHHHHHHH
Confidence            3455556788999999999999999999999999999999999999875

>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase

Probab=87.01  E-value=10  Score=32.89  Aligned_cols=100  Identities=20%  Similarity=0.184  Sum_probs=60.9

Q ss_pred             CCCCCeEEEEcCc-ccHhHHHHHhh-CCe-EEEEcCCHHHHHHHhcCCCceEEeCCCCch-hhhhhccCCCCceeeEEEc
Q 037961           31 TPKRNLAWDVGTR-SGQAAASLAQI-YQH-VIATDTSPKQLKFAIKLPNIRYQLTPTMSI-TELEQNVATQSSVDLVTIA  106 (262)
Q Consensus        31 ~~~~~~vlDvGcG-~G~~~~~l~~~-~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~D~V~~~  106 (262)
                      ..++.+||=.|+| .|..+..+++. +.+ +++++.+++..+.+++...-.+...+.... ..+... .....+|+|+-.
T Consensus       163 ~~~g~~VlV~g~g~vg~~~~~la~~~g~~~v~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~i~~~-~~~~~vd~vld~  241 (343)
T cd08235         163 IKPGDTVLVIGAGPIGLLHAMLAKASGARKVIVSDLNEFRLEFAKKLGADYTIDAAEEDLVEKVREL-TDGRGADVVIVA  241 (343)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCcEEecCCccCHHHHHHHH-hCCcCCCEEEEC
Confidence            3566777777875 46666666664 778 999999998888776542212222211111 112222 234458999853


Q ss_pred             cccccCChhHHHHHHHHhhcCCCeEEEEEec
Q 037961          107 SALHWFDLPQFYKQVKWVLKKPSGVIAAWTY  137 (262)
Q Consensus       107 ~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~  137 (262)
                      ..     -...+..+.+.|+ ++|+++.+..
T Consensus       242 ~~-----~~~~~~~~~~~l~-~~g~~v~~~~  266 (343)
T cd08235         242 TG-----SPEAQAQALELVR-KGGRILFFGG  266 (343)
T ss_pred             CC-----ChHHHHHHHHHhh-cCCEEEEEec
Confidence            22     1347888899999 9999987553

Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i

>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised

Probab=86.72  E-value=1.4  Score=39.46  Aligned_cols=59  Identities=15%  Similarity=0.335  Sum_probs=45.5

Q ss_pred             CCceEEeCCCCchhhhhhc--cCCCCceeeEEEccccccCChhH---HHHHHHHhhcCCCeEEEEEecCCC
Q 037961           75 PNIRYQLTPTMSITELEQN--VATQSSVDLVTIASALHWFDLPQ---FYKQVKWVLKKPSGVIAAWTYTMP  140 (262)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~--~~~~~~~D~V~~~~~~~~~d~~~---~l~~~~r~Lk~pgG~l~i~~~~~~  140 (262)
                      .++++..++      +.+.  ..+++++|.++..-.+-|++++.   .++++.+.++ |||+++.++...+
T Consensus       275 drv~i~t~s------i~~~L~~~~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~-pgaRV~~Rsa~~~  338 (380)
T PF11899_consen  275 DRVRIHTDS------IEEVLRRLPPGSFDRFVLSDHMDWMDPEQLNEEWQELARTAR-PGARVLWRSAAVP  338 (380)
T ss_pred             CeEEEEecc------HHHHHHhCCCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhC-CCCEEEEeeCCCC
Confidence            566666654      2221  14689999999999999996655   7889999999 9999999887644

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.

>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain

Probab=86.59  E-value=13  Score=28.61  Aligned_cols=105  Identities=11%  Similarity=0.088  Sum_probs=53.2

Q ss_pred             CCeEEEEcCcccHhHHHHH-------hhCCeEEEEcCCHHHHHHHh-cCCCceEEeCC--C--------C-c------hh
Q 037961           34 RNLAWDVGTRSGQAAASLA-------QIYQHVIATDTSPKQLKFAI-KLPNIRYQLTP--T--------M-S------IT   88 (262)
Q Consensus        34 ~~~vlDvGcG~G~~~~~l~-------~~~~~v~~vD~s~~~~~~a~-~~~~~~~~~~~--~--------~-~------~~   88 (262)
                      ..++||+-+|.|...+.|-       ++..++..+.+....++... ++.+..+....  .        . .      +.
T Consensus         5 ~~~~~d~hpGaGKTr~vlp~~~~~~i~~~~rvLvL~PTRvva~em~~aL~~~~~~~~t~~~~~~~~g~~~i~vMc~at~~   84 (148)
T PF07652_consen    5 ELTVLDLHPGAGKTRRVLPEIVREAIKRRLRVLVLAPTRVVAEEMYEALKGLPVRFHTNARMRTHFGSSIIDVMCHATYG   84 (148)
T ss_dssp             EEEEEE--TTSSTTTTHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHTTTSSEEEESTTSS----SSSSEEEEEHHHHH
T ss_pred             ceeEEecCCCCCCcccccHHHHHHHHHccCeEEEecccHHHHHHHHHHHhcCCcccCceeeeccccCCCcccccccHHHH
Confidence            3578999999998776553       25779999999988776543 22222211111  0        0 0      01


Q ss_pred             hhhhccCCCCceeeEEEccccccCChhH-HHHHHHHhhcCCCe-EEEEEecCC
Q 037961           89 ELEQNVATQSSVDLVTIASALHWFDLPQ-FYKQVKWVLKKPSG-VIAAWTYTM  139 (262)
Q Consensus        89 ~~~~~~~~~~~~D~V~~~~~~~~~d~~~-~l~~~~r~Lk~pgG-~l~i~~~~~  139 (262)
                      .....|.....||+|++..+ ||.|+.. +.....+-+.+.|+ .++..+..+
T Consensus        85 ~~~~~p~~~~~yd~II~DEc-H~~Dp~sIA~rg~l~~~~~~g~~~~i~mTATP  136 (148)
T PF07652_consen   85 HFLLNPCRLKNYDVIIMDEC-HFTDPTSIAARGYLRELAESGEAKVIFMTATP  136 (148)
T ss_dssp             HHHHTSSCTTS-SEEEECTT-T--SHHHHHHHHHHHHHHHTTS-EEEEEESS-
T ss_pred             HHhcCcccccCccEEEEecc-ccCCHHHHhhheeHHHhhhccCeeEEEEeCCC
Confidence            11112445567999999887 8889888 33334444441443 333344443

The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=86.57  E-value=5  Score=36.55  Aligned_cols=90  Identities=16%  Similarity=0.095  Sum_probs=57.0

Q ss_pred             CCCeEEEEcCcc-cHhHHHHH-hhCCeEEEEcCCHHHHHHHhcCCCceEEeCCCCchhhhhhccCCCCceeeEEEccccc
Q 037961           33 KRNLAWDVGTRS-GQAAASLA-QIYQHVIATDTSPKQLKFAIKLPNIRYQLTPTMSITELEQNVATQSSVDLVTIASALH  110 (262)
Q Consensus        33 ~~~~vlDvGcG~-G~~~~~l~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~~  110 (262)
                      .+.+|+=+|+|. |......+ ..|.+|+.+|.++.-...+... +..+.  +      .++.   -...|+|+....  
T Consensus       211 ~Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~~-G~~v~--~------l~ea---l~~aDVVI~aTG--  276 (425)
T PRK05476        211 AGKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPICALQAAMD-GFRVM--T------MEEA---AELGDIFVTATG--  276 (425)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCchhhHHHHhc-CCEec--C------HHHH---HhCCCEEEECCC--
Confidence            678899999986 54443333 3588999999998765555432 33322  1      1111   125799986532  


Q ss_pred             cCChhHHHH-HHHHhhcCCCeEEEEEecCCC
Q 037961          111 WFDLPQFYK-QVKWVLKKPSGVIAAWTYTMP  140 (262)
Q Consensus       111 ~~d~~~~l~-~~~r~Lk~pgG~l~i~~~~~~  140 (262)
                         ...++. +....+| +|++++.....+.
T Consensus       277 ---~~~vI~~~~~~~mK-~GailiNvG~~d~  303 (425)
T PRK05476        277 ---NKDVITAEHMEAMK-DGAILANIGHFDN  303 (425)
T ss_pred             ---CHHHHHHHHHhcCC-CCCEEEEcCCCCC
Confidence               234554 7888999 8998887665543

>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []

Probab=86.45  E-value=8.6  Score=34.44  Aligned_cols=120  Identities=17%  Similarity=0.153  Sum_probs=65.5

Q ss_pred             CCCeEEEEcCcccHhHHHH----Hhh--C---CeEEEEcC----CHHHHHHHhcC-------CCceEEeCC----CCchh
Q 037961           33 KRNLAWDVGTRSGQAAASL----AQI--Y---QHVIATDT----SPKQLKFAIKL-------PNIRYQLTP----TMSIT   88 (262)
Q Consensus        33 ~~~~vlDvGcG~G~~~~~l----~~~--~---~~v~~vD~----s~~~~~~a~~~-------~~~~~~~~~----~~~~~   88 (262)
                      +.-+|+|+|.|.|..-..|    +.+  +   -+|||++.    +..-++...++       -++.+.-..    .+..-
T Consensus       110 ~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv~fef~~v~~~~~e~l  189 (374)
T PF03514_consen  110 RRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGVPFEFHPVVVESLEDL  189 (374)
T ss_pred             cceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCccEEEEecccCchhhC
Confidence            5568999999999644433    333  2   27999999    66666655431       233332221    11111


Q ss_pred             hhhhccCCCCceeeEEEccccccC-Ch-------hHHHHHHHHhhcCCCeEEEE---EecCCCcccHHHHHhhccc
Q 037961           89 ELEQNVATQSSVDLVTIASALHWF-DL-------PQFYKQVKWVLKKPSGVIAA---WTYTMPEINESVGAVFKPF  153 (262)
Q Consensus        89 ~~~~~~~~~~~~D~V~~~~~~~~~-d~-------~~~l~~~~r~Lk~pgG~l~i---~~~~~~~~~~~~~~~~~~~  153 (262)
                      +...+.+.++..=+|-+...+|++ +.       ...+=...|-|+ |.-.+++   .+.+.+.|...+.+.+..|
T Consensus       190 ~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~ir~L~-P~vvv~~E~ea~~n~~~F~~RF~eal~yY  264 (374)
T PF03514_consen  190 DPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVIRSLN-PKVVVLVEQEADHNSPSFLERFREALHYY  264 (374)
T ss_pred             CHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHHHhcC-CCEEEEEeecCCCCCCchHHHHHHHHHHH
Confidence            233344445544455577778887 32       222334555678 8866555   2334556656665555444

Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.

>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like

Probab=86.34  E-value=11  Score=32.66  Aligned_cols=97  Identities=13%  Similarity=0.087  Sum_probs=58.7

Q ss_pred             CCCCeEEEEcCcc-cHhHHHHHhh-CCe-EEEEcCCHHHHHHHhcCCCceEEe-CCCC-chhhhhhccCCCCceeeEEEc
Q 037961           32 PKRNLAWDVGTRS-GQAAASLAQI-YQH-VIATDTSPKQLKFAIKLPNIRYQL-TPTM-SITELEQNVATQSSVDLVTIA  106 (262)
Q Consensus        32 ~~~~~vlDvGcG~-G~~~~~l~~~-~~~-v~~vD~s~~~~~~a~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~D~V~~~  106 (262)
                      .++..||=.|||. |..+..+++. |.+ +++++.++.-.+.+++.. +.... .... ....+.... ....+|+|+..
T Consensus       167 ~~g~~vlI~g~g~vg~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~g-a~~v~~~~~~~~~~~i~~~~-~~~~~d~il~~  244 (345)
T cd08287         167 RPGSTVVVVGDGAVGLCAVLAAKRLGAERIIAMSRHEDRQALAREFG-ATDIVAERGEEAVARVRELT-GGVGADAVLEC  244 (345)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcC-CceEecCCcccHHHHHHHhc-CCCCCCEEEEC
Confidence            4555655578764 6666666664 664 899999887766666542 22222 1110 011222222 34468988843


Q ss_pred             cccccCChhHHHHHHHHhhcCCCeEEEEEe
Q 037961          107 SALHWFDLPQFYKQVKWVLKKPSGVIAAWT  136 (262)
Q Consensus       107 ~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~  136 (262)
                      .     .....+..+.+.|+ ++|+++...
T Consensus       245 ~-----g~~~~~~~~~~~l~-~~g~~v~~g  268 (345)
T cd08287         245 V-----GTQESMEQAIAIAR-PGGRVGYVG  268 (345)
T ss_pred             C-----CCHHHHHHHHHhhc-cCCEEEEec
Confidence            2     22468899999999 999998754

This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>PRK10083 putative oxidoreductase; Provisional

Probab=85.81  E-value=12  Score=32.49  Aligned_cols=98  Identities=14%  Similarity=0.196  Sum_probs=59.2

Q ss_pred             CCCCeEEEEcCcc-cHhHHHHHh-h-CCe-EEEEcCCHHHHHHHhcCCCceEEeC-CCCchhhhhhccCCCCceeeEEEc
Q 037961           32 PKRNLAWDVGTRS-GQAAASLAQ-I-YQH-VIATDTSPKQLKFAIKLPNIRYQLT-PTMSITELEQNVATQSSVDLVTIA  106 (262)
Q Consensus        32 ~~~~~vlDvGcG~-G~~~~~l~~-~-~~~-v~~vD~s~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~V~~~  106 (262)
                      .++.+||=.|+|. |..+.++++ . |.+ ++++|.+++-.+.+++.. +..... .....  .+.+.-....+|+|+-.
T Consensus       159 ~~g~~vlI~g~g~vG~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~~~G-a~~~i~~~~~~~--~~~~~~~g~~~d~vid~  235 (339)
T PRK10083        159 TEQDVALIYGAGPVGLTIVQVLKGVYNVKAVIVADRIDERLALAKESG-ADWVINNAQEPL--GEALEEKGIKPTLIIDA  235 (339)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHhC-CcEEecCccccH--HHHHhcCCCCCCEEEEC
Confidence            4677888888764 666666776 3 764 888999998888877642 222211 11000  11111011235677643


Q ss_pred             cccccCChhHHHHHHHHhhcCCCeEEEEEecC
Q 037961          107 SALHWFDLPQFYKQVKWVLKKPSGVIAAWTYT  138 (262)
Q Consensus       107 ~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~~  138 (262)
                      ..     ....+.++.+.|+ ++|+++.+...
T Consensus       236 ~g-----~~~~~~~~~~~l~-~~G~~v~~g~~  261 (339)
T PRK10083        236 AC-----HPSILEEAVTLAS-PAARIVLMGFS  261 (339)
T ss_pred             CC-----CHHHHHHHHHHhh-cCCEEEEEccC
Confidence            22     1347888999999 99999986543

>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family

Probab=85.67  E-value=10  Score=32.91  Aligned_cols=98  Identities=15%  Similarity=0.135  Sum_probs=60.1

Q ss_pred             CCCCeEEEEcCcc-cHhHHHHHh-hCCeEEEEcCCHHHHHHHhcCCCceEEeCCC-Cch-hhhhhccCCCCceeeEEEcc
Q 037961           32 PKRNLAWDVGTRS-GQAAASLAQ-IYQHVIATDTSPKQLKFAIKLPNIRYQLTPT-MSI-TELEQNVATQSSVDLVTIAS  107 (262)
Q Consensus        32 ~~~~~vlDvGcG~-G~~~~~l~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~D~V~~~~  107 (262)
                      .++.+||=.|||. |..+..+++ .|.++++++.+++..+.+++..-..++.... ... ..+..+. +. .+|+|+...
T Consensus       164 ~~~~~vlV~g~g~vg~~~~~~a~~~G~~vi~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~-~~-~~d~vi~~~  241 (345)
T cd08260         164 KPGEWVAVHGCGGVGLSAVMIASALGARVIAVDIDDDKLELARELGAVATVNASEVEDVAAAVRDLT-GG-GAHVSVDAL  241 (345)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHhCCCEEEccccchhHHHHHHHHh-CC-CCCEEEEcC
Confidence            4567778788653 556666665 4889999999998888876542112221111 011 0111121 22 699998542


Q ss_pred             ccccCChhHHHHHHHHhhcCCCeEEEEEec
Q 037961          108 ALHWFDLPQFYKQVKWVLKKPSGVIAAWTY  137 (262)
Q Consensus       108 ~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~  137 (262)
                      .     ....+..+.+.|+ ++|+++.+..
T Consensus       242 g-----~~~~~~~~~~~l~-~~g~~i~~g~  265 (345)
T cd08260         242 G-----IPETCRNSVASLR-KRGRHVQVGL  265 (345)
T ss_pred             C-----CHHHHHHHHHHhh-cCCEEEEeCC
Confidence            2     1457788999999 9999887553

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty

>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family

Probab=85.63  E-value=15  Score=31.08  Aligned_cols=99  Identities=18%  Similarity=0.154  Sum_probs=58.7

Q ss_pred             CCCCeEEEEcCc-ccHhHHHHHhh-CCe-EEEEcCCHHHHHHHhcCCCceEEeCCCCch-hhhhhccCCCCceeeEEEcc
Q 037961           32 PKRNLAWDVGTR-SGQAAASLAQI-YQH-VIATDTSPKQLKFAIKLPNIRYQLTPTMSI-TELEQNVATQSSVDLVTIAS  107 (262)
Q Consensus        32 ~~~~~vlDvGcG-~G~~~~~l~~~-~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~D~V~~~~  107 (262)
                      .++..+|=.|+| .|..+..+++. |.+ ++++.-+++..+.+++..-..+........ ..+..+. ....+|+++-..
T Consensus       128 ~~~~~vlI~g~g~vg~~~~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~-~~~~vd~vld~~  206 (312)
T cd08269         128 RAGKTVAVIGAGFIGLLFLQLAAAAGARRVIAIDRRPARLALARELGATEVVTDDSEAIVERVRELT-GGAGADVVIEAV  206 (312)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCceEecCCCcCHHHHHHHHc-CCCCCCEEEECC
Confidence            466677766754 25555555554 777 999999888777666542212222111001 1122221 334689998542


Q ss_pred             ccccCChhHHHHHHHHhhcCCCeEEEEEec
Q 037961          108 ALHWFDLPQFYKQVKWVLKKPSGVIAAWTY  137 (262)
Q Consensus       108 ~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~  137 (262)
                      .     ....+....+.|+ ++|+++.+..
T Consensus       207 g-----~~~~~~~~~~~l~-~~g~~~~~g~  230 (312)
T cd08269         207 G-----HQWPLDLAGELVA-ERGRLVIFGY  230 (312)
T ss_pred             C-----CHHHHHHHHHHhc-cCCEEEEEcc
Confidence            1     2347888999999 9999997653

The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i

>TIGR00675 dcm DNA-methyltransferase (dcm)

Probab=85.32  E-value=2.3  Score=37.03  Aligned_cols=67  Identities=10%  Similarity=-0.003  Sum_probs=46.5

Q ss_pred             EEEEcCcccHhHHHHHhhCCeEE-EEcCCHHHHHHHhcC-CCceEEeCCCCchhhhhhccC-CCCceeeEEEccccc
Q 037961           37 AWDVGTRSGQAAASLAQIYQHVI-ATDTSPKQLKFAIKL-PNIRYQLTPTMSITELEQNVA-TQSSVDLVTIASALH  110 (262)
Q Consensus        37 vlDvGcG~G~~~~~l~~~~~~v~-~vD~s~~~~~~a~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~D~V~~~~~~~  110 (262)
                      |+|+-||.|.++.-+.+.|.+++ ++|+++..++.-+.+ ++ ....+|      +.++.. .-..+|+++....+.
T Consensus         1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a~~ty~~N~~~-~~~~~D------i~~~~~~~~~~~dvl~gg~PCq   70 (315)
T TIGR00675         1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYAQKTYEANFGN-KVPFGD------ITKISPSDIPDFDILLGGFPCQ   70 (315)
T ss_pred             CEEEecCccHHHHHHHHcCCeEEEEEeCCHHHHHHHHHhCCC-CCCccC------hhhhhhhhCCCcCEEEecCCCc
Confidence            58999999999999988888765 799999999876653 44 334444      222211 112589999865554

All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional

Probab=85.27  E-value=11  Score=32.59  Aligned_cols=97  Identities=14%  Similarity=0.163  Sum_probs=60.3

Q ss_pred             CCCCCeEEEEcCcc-cHhHHHHHhh--CCeEEEEcCCHHHHHHHhcCCCceEEeCC-C-Cc-hhhhhhccCCCCceeeEE
Q 037961           31 TPKRNLAWDVGTRS-GQAAASLAQI--YQHVIATDTSPKQLKFAIKLPNIRYQLTP-T-MS-ITELEQNVATQSSVDLVT  104 (262)
Q Consensus        31 ~~~~~~vlDvGcG~-G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~-~-~~-~~~~~~~~~~~~~~D~V~  104 (262)
                      ..++.+||=.|+|. |..+..+++.  |.++++++.+++..+.+++.. +..+... . .. ...+...  . +.+|.++
T Consensus       160 ~~~g~~vlV~g~g~vG~~~~~la~~~~g~~v~~~~~~~~~~~~~~~~g-~~~v~~~~~~~~~~~~v~~~--~-~~~d~vi  235 (338)
T PRK09422        160 IKPGQWIAIYGAGGLGNLALQYAKNVFNAKVIAVDINDDKLALAKEVG-ADLTINSKRVEDVAKIIQEK--T-GGAHAAV  235 (338)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHcC-CcEEecccccccHHHHHHHh--c-CCCcEEE
Confidence            35677888888764 6777777773  889999999999999887652 3222211 0 00 0111111  1 2477444


Q ss_pred             EccccccCChhHHHHHHHHhhcCCCeEEEEEec
Q 037961          105 IASALHWFDLPQFYKQVKWVLKKPSGVIAAWTY  137 (262)
Q Consensus       105 ~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~  137 (262)
                      ....     ....+.++.+.|+ ++|+++.+..
T Consensus       236 ~~~~-----~~~~~~~~~~~l~-~~G~~v~~g~  262 (338)
T PRK09422        236 VTAV-----AKAAFNQAVDAVR-AGGRVVAVGL  262 (338)
T ss_pred             EeCC-----CHHHHHHHHHhcc-CCCEEEEEee
Confidence            2211     1457899999999 9999987653

>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH)

Probab=85.25  E-value=15  Score=32.51  Aligned_cols=101  Identities=17%  Similarity=0.069  Sum_probs=61.5

Q ss_pred             CCCCeEEEEcCcc-cHhHHHHHhh-CC-eEEEEcCCHHHHHHHhcCCCceEEeCCC-CchhhhhhccCCCCceeeEEEcc
Q 037961           32 PKRNLAWDVGTRS-GQAAASLAQI-YQ-HVIATDTSPKQLKFAIKLPNIRYQLTPT-MSITELEQNVATQSSVDLVTIAS  107 (262)
Q Consensus        32 ~~~~~vlDvGcG~-G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~V~~~~  107 (262)
                      .++.+||=.|||. |..+..+++. |. +++++|.++.-.+.+++.. ...+.... -....+..+  ....+|+|+-..
T Consensus       175 ~~g~~vlI~g~g~vg~~~~~~a~~~G~~~vi~~~~~~~~~~~~~~~g-~~~v~~~~~~~~~~i~~~--~~~~~d~v~d~~  251 (375)
T cd08282         175 QPGDTVAVFGAGPVGLMAAYSAILRGASRVYVVDHVPERLDLAESIG-AIPIDFSDGDPVEQILGL--EPGGVDRAVDCV  251 (375)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcC-CeEeccCcccHHHHHHHh--hCCCCCEEEECC
Confidence            4566666688864 6666666654 65 7999999998888877653 22221111 001112222  224689998643


Q ss_pred             ccc----cC--ChhHHHHHHHHhhcCCCeEEEEEe
Q 037961          108 ALH----WF--DLPQFYKQVKWVLKKPSGVIAAWT  136 (262)
Q Consensus       108 ~~~----~~--d~~~~l~~~~r~Lk~pgG~l~i~~  136 (262)
                      .-.    +.  +....+.++.++|+ ++|++.+..
T Consensus       252 g~~~~~~~~~~~~~~~~~~~~~~l~-~~g~~~~~g  285 (375)
T cd08282         252 GYEARDRGGEAQPNLVLNQLIRVTR-PGGGIGIVG  285 (375)
T ss_pred             CCcccccccccchHHHHHHHHHHhh-cCcEEEEEe
Confidence            321    11  34457889999999 999997644

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo

>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]

Probab=85.12  E-value=5.6  Score=36.33  Aligned_cols=102  Identities=16%  Similarity=0.032  Sum_probs=59.1

Q ss_pred             CCCeEEEEcCcccHhHHH--HHh--hCCeEEEEcCCHHHHHHHhcC-CC-----ceEEeCCCCchhhhhhccCC-CCcee
Q 037961           33 KRNLAWDVGTRSGQAAAS--LAQ--IYQHVIATDTSPKQLKFAIKL-PN-----IRYQLTPTMSITELEQNVAT-QSSVD  101 (262)
Q Consensus        33 ~~~~vlDvGcG~G~~~~~--l~~--~~~~v~~vD~s~~~~~~a~~~-~~-----~~~~~~~~~~~~~~~~~~~~-~~~~D  101 (262)
                      ....+.|+|.|.|.-.-.  ..-  ....++.||.|..|....... .+     -.++..-.   ---..+|.. ...||
T Consensus       200 ~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~~---~~r~~~pi~~~~~yD  276 (491)
T KOG2539|consen  200 RPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGSHIGEPIVRKLV---FHRQRLPIDIKNGYD  276 (491)
T ss_pred             ChHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChhhcCchhccccc---hhcccCCCCccccee
Confidence            345667887776543332  222  256799999999999877542 11     00110000   000113333 34599


Q ss_pred             eEEEccccccC-ChhH----HHHHHHHhhcCCCeEEEEEecC
Q 037961          102 LVTIASALHWF-DLPQ----FYKQVKWVLKKPSGVIAAWTYT  138 (262)
Q Consensus       102 ~V~~~~~~~~~-d~~~----~l~~~~r~Lk~pgG~l~i~~~~  138 (262)
                      +|++++.+|.+ ....    ..+.+.+..+ +||.+++...+
T Consensus       277 lvi~ah~l~~~~s~~~R~~v~~s~~r~~~r-~g~~lViIe~g  317 (491)
T KOG2539|consen  277 LVICAHKLHELGSKFSRLDVPESLWRKTDR-SGYFLVIIEKG  317 (491)
T ss_pred             eEEeeeeeeccCCchhhhhhhHHHHHhccC-CCceEEEEecC
Confidence            99999999987 3322    3344556677 89998874444

>TIGR00936 ahcY adenosylhomocysteinase

Probab=85.10  E-value=5.6  Score=36.03  Aligned_cols=101  Identities=18%  Similarity=0.074  Sum_probs=62.1

Q ss_pred             HHHHHHHhhC---CCCCeEEEEcCcc-cHhHHHHHh-hCCeEEEEcCCHHHHHHHhcCCCceEEeCCCCchhhhhhccCC
Q 037961           22 ELFKLIASKT---PKRNLAWDVGTRS-GQAAASLAQ-IYQHVIATDTSPKQLKFAIKLPNIRYQLTPTMSITELEQNVAT   96 (262)
Q Consensus        22 ~~~~~l~~~~---~~~~~vlDvGcG~-G~~~~~l~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~   96 (262)
                      ...+.+....   -.+.+|+=+|+|. |......++ .|.+|+++|.++.-...+... +..+.  +      .++. + 
T Consensus       180 s~~~~i~r~t~~~l~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~~-G~~v~--~------leea-l-  248 (406)
T TIGR00936       180 STIDGILRATNLLIAGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAAMD-GFRVM--T------MEEA-A-  248 (406)
T ss_pred             hHHHHHHHhcCCCCCcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHHhc-CCEeC--C------HHHH-H-
Confidence            3444444432   3678999999997 555554444 488999999998765555432 33222  1      1111 1 


Q ss_pred             CCceeeEEEccccccCChhHHHH-HHHHhhcCCCeEEEEEecCCC
Q 037961           97 QSSVDLVTIASALHWFDLPQFYK-QVKWVLKKPSGVIAAWTYTMP  140 (262)
Q Consensus        97 ~~~~D~V~~~~~~~~~d~~~~l~-~~~r~Lk~pgG~l~i~~~~~~  140 (262)
                       ...|+|+....     ...++. +....+| +|++++.....+.
T Consensus       249 -~~aDVVItaTG-----~~~vI~~~~~~~mK-~GailiN~G~~~~  286 (406)
T TIGR00936       249 -KIGDIFITATG-----NKDVIRGEHFENMK-DGAIVANIGHFDV  286 (406)
T ss_pred             -hcCCEEEECCC-----CHHHHHHHHHhcCC-CCcEEEEECCCCc
Confidence             24699886433     344554 5888999 9999987665543

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>PRK10458 DNA cytosine methylase; Provisional

Probab=84.99  E-value=6.9  Score=36.15  Aligned_cols=40  Identities=10%  Similarity=-0.005  Sum_probs=33.2

Q ss_pred             CCeEEEEcCcccHhHHHHHhhCCe-EEEEcCCHHHHHHHhc
Q 037961           34 RNLAWDVGTRSGQAAASLAQIYQH-VIATDTSPKQLKFAIK   73 (262)
Q Consensus        34 ~~~vlDvGcG~G~~~~~l~~~~~~-v~~vD~s~~~~~~a~~   73 (262)
                      .-+++|+-||.|.++..+-..|.+ |.++|+++..++.-+.
T Consensus        88 ~~~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid~~A~~TY~~  128 (467)
T PRK10458         88 AFRFIDLFAGIGGIRRGFEAIGGQCVFTSEWNKHAVRTYKA  128 (467)
T ss_pred             CceEEEeCcCccHHHHHHHHcCCEEEEEEechHHHHHHHHH
Confidence            458899999999999999887765 5689999998886554

>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family

Probab=84.43  E-value=16  Score=31.30  Aligned_cols=97  Identities=20%  Similarity=0.127  Sum_probs=58.6

Q ss_pred             CCCCeEEEEcCc--ccHhHHHHHh-hCCeEEEEcCCHHHHHHHhcCCCceEEeCCCCch-hhhhhccCCCCceeeEEEcc
Q 037961           32 PKRNLAWDVGTR--SGQAAASLAQ-IYQHVIATDTSPKQLKFAIKLPNIRYQLTPTMSI-TELEQNVATQSSVDLVTIAS  107 (262)
Q Consensus        32 ~~~~~vlDvGcG--~G~~~~~l~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~D~V~~~~  107 (262)
                      .++..+|-.|++  .|.....++. .+.+++.++.++...+.++............... ..+... .....+|+++.+.
T Consensus       165 ~~~~~vlI~g~~~~iG~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~i~~~  243 (342)
T cd08266         165 RPGETVLVHGAGSGVGSAAIQIAKLFGATVIATAGSEDKLERAKELGADYVIDYRKEDFVREVREL-TGKRGVDVVVEHV  243 (342)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCeEEecCChHHHHHHHHH-hCCCCCcEEEECC
Confidence            456778878875  4666655555 4889999999988887776432111111111000 111111 1234689998654


Q ss_pred             ccccCChhHHHHHHHHhhcCCCeEEEEEe
Q 037961          108 ALHWFDLPQFYKQVKWVLKKPSGVIAAWT  136 (262)
Q Consensus       108 ~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~  136 (262)
                      .      ...+.++.+.|+ ++|+++...
T Consensus       244 g------~~~~~~~~~~l~-~~G~~v~~~  265 (342)
T cd08266         244 G------AATWEKSLKSLA-RGGRLVTCG  265 (342)
T ss_pred             c------HHHHHHHHHHhh-cCCEEEEEe
Confidence            3      245677889999 999988754

This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone

>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD)

Probab=83.99  E-value=13  Score=32.33  Aligned_cols=95  Identities=21%  Similarity=0.189  Sum_probs=58.0

Q ss_pred             CCCCeEEEEcCcc-cHhHHHHHhh-CCeEEEEcCCHHHHHHHhcCCCceEEeCCCCchhhhhhccCCCCceeeEEEcccc
Q 037961           32 PKRNLAWDVGTRS-GQAAASLAQI-YQHVIATDTSPKQLKFAIKLPNIRYQLTPTMSITELEQNVATQSSVDLVTIASAL  109 (262)
Q Consensus        32 ~~~~~vlDvGcG~-G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~  109 (262)
                      .++.++|=.|||. |..+..+++. +.++++++.+++..+.+++...-.++.....  .....   ..+.+|+|+.... 
T Consensus       168 ~~g~~vlV~g~g~vG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~--~~~~~---~~~~~d~v~~~~g-  241 (337)
T cd05283         168 GPGKRVGVVGIGGLGHLAVKFAKALGAEVTAFSRSPSKKEDALKLGADEFIATKDP--EAMKK---AAGSLDLIIDTVS-  241 (337)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHcCCcEEecCcch--hhhhh---ccCCceEEEECCC-
Confidence            4556655577753 5666666654 7899999999988888865431122211110  00111   1356899884322 


Q ss_pred             ccCChhHHHHHHHHhhcCCCeEEEEEec
Q 037961          110 HWFDLPQFYKQVKWVLKKPSGVIAAWTY  137 (262)
Q Consensus       110 ~~~d~~~~l~~~~r~Lk~pgG~l~i~~~  137 (262)
                          ....+..+.+.|+ ++|+++.+..
T Consensus       242 ----~~~~~~~~~~~l~-~~G~~v~~g~  264 (337)
T cd05283         242 ----ASHDLDPYLSLLK-PGGTLVLVGA  264 (337)
T ss_pred             ----CcchHHHHHHHhc-CCCEEEEEec
Confidence                1235788899999 9999987653

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic

>PTZ00354 alcohol dehydrogenase; Provisional

Probab=83.88  E-value=19  Score=30.84  Aligned_cols=97  Identities=22%  Similarity=0.206  Sum_probs=61.0

Q ss_pred             CCCCeEEEEcC--cccHhHHHHHhh-CCeEEEEcCCHHHHHHHhcCCCceEEeCCCCc-h-hhhhhccCCCCceeeEEEc
Q 037961           32 PKRNLAWDVGT--RSGQAAASLAQI-YQHVIATDTSPKQLKFAIKLPNIRYQLTPTMS-I-TELEQNVATQSSVDLVTIA  106 (262)
Q Consensus        32 ~~~~~vlDvGc--G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~D~V~~~  106 (262)
                      .++..||=.|+  +.|..+..+++. |.+++.++-+++..+.+++..-..++.....+ . ..+... .....+|+++..
T Consensus       139 ~~~~~vlI~ga~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~i~~  217 (334)
T PTZ00354        139 KKGQSVLIHAGASGVGTAAAQLAEKYGAATIITTSSEEKVDFCKKLAAIILIRYPDEEGFAPKVKKL-TGEKGVNLVLDC  217 (334)
T ss_pred             CCCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCcEEEecCChhHHHHHHHHH-hCCCCceEEEEC
Confidence            46677777774  357777777764 88888899999988888654221122111100 0 111111 134569999864


Q ss_pred             cccccCChhHHHHHHHHhhcCCCeEEEEEe
Q 037961          107 SALHWFDLPQFYKQVKWVLKKPSGVIAAWT  136 (262)
Q Consensus       107 ~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~  136 (262)
                      ..      ...+..+.+.|+ ++|+++...
T Consensus       218 ~~------~~~~~~~~~~l~-~~g~~i~~~  240 (334)
T PTZ00354        218 VG------GSYLSETAEVLA-VDGKWIVYG  240 (334)
T ss_pred             Cc------hHHHHHHHHHhc-cCCeEEEEe
Confidence            32      357788999999 999998754

>cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases

Probab=83.83  E-value=16  Score=31.15  Aligned_cols=94  Identities=14%  Similarity=0.035  Sum_probs=58.7

Q ss_pred             CCeEEEEcC--cccHhHHHHHhh-CCeEEEEcCCHHHHHHHhcCCCceEEeCC-CCchhhhhhccCCCCceeeEEEcccc
Q 037961           34 RNLAWDVGT--RSGQAAASLAQI-YQHVIATDTSPKQLKFAIKLPNIRYQLTP-TMSITELEQNVATQSSVDLVTIASAL  109 (262)
Q Consensus        34 ~~~vlDvGc--G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~D~V~~~~~~  109 (262)
                      +..||=.|+  +.|.++..+++. |.+|++++.+++..+.+++.. ....... .... ..... ...+.+|+|+.... 
T Consensus       147 ~~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~-~~~~~-~~~~~~d~vi~~~~-  222 (325)
T cd05280         147 DGPVLVTGATGGVGSIAVAILAKLGYTVVALTGKEEQADYLKSLG-ASEVLDREDLLD-ESKKP-LLKARWAGAIDTVG-  222 (325)
T ss_pred             CCEEEEECCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcC-CcEEEcchhHHH-HHHHH-hcCCCccEEEECCc-
Confidence            357777776  346666666664 889999999998888886643 2222221 1100 11111 12345898885422 


Q ss_pred             ccCChhHHHHHHHHhhcCCCeEEEEEec
Q 037961          110 HWFDLPQFYKQVKWVLKKPSGVIAAWTY  137 (262)
Q Consensus       110 ~~~d~~~~l~~~~r~Lk~pgG~l~i~~~  137 (262)
                           ...+.++.+.|+ ++|+++.+..
T Consensus       223 -----~~~~~~~~~~l~-~~g~~v~~g~  244 (325)
T cd05280         223 -----GDVLANLLKQTK-YGGVVASCGN  244 (325)
T ss_pred             -----hHHHHHHHHhhc-CCCEEEEEec
Confidence                 247888999999 9999987654

Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so

>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases

Probab=83.78  E-value=16  Score=32.32  Aligned_cols=99  Identities=14%  Similarity=0.033  Sum_probs=58.5

Q ss_pred             CCCCeEEEEcCcc-cHhHHHHHhh-CCe-EEEEcCCHHHHHHHhcCCCceEEeCCCC--ch-hhhhhccCCCCceeeEEE
Q 037961           32 PKRNLAWDVGTRS-GQAAASLAQI-YQH-VIATDTSPKQLKFAIKLPNIRYQLTPTM--SI-TELEQNVATQSSVDLVTI  105 (262)
Q Consensus        32 ~~~~~vlDvGcG~-G~~~~~l~~~-~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~D~V~~  105 (262)
                      .++.+||=.|+|. |..+..+++. |.+ +++++.++...+.+++..-..++.....  .. ..+..+.  .+.+|+|+-
T Consensus       182 ~~g~~vlI~g~g~vG~~a~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~l~~~~--~~~~d~vid  259 (365)
T cd05279         182 TPGSTCAVFGLGGVGLSVIMGCKAAGASRIIAVDINKDKFEKAKQLGATECINPRDQDKPIVEVLTEMT--DGGVDYAFE  259 (365)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHhCCCeecccccccchHHHHHHHHh--CCCCcEEEE
Confidence            4667777778764 5566666664 664 8899999988888876422122221111  11 1122222  246899985


Q ss_pred             ccccccCChhHHHHHHHHhhcCCCeEEEEEec
Q 037961          106 ASALHWFDLPQFYKQVKWVLKKPSGVIAAWTY  137 (262)
Q Consensus       106 ~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~  137 (262)
                      ...     ....+..+.+.|++++|+++....
T Consensus       260 ~~g-----~~~~~~~~~~~l~~~~G~~v~~g~  286 (365)
T cd05279         260 VIG-----SADTLKQALDATRLGGGTSVVVGV  286 (365)
T ss_pred             CCC-----CHHHHHHHHHHhccCCCEEEEEec
Confidence            422     135677788888646999887543

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall

>PRK12742 oxidoreductase; Provisional

Probab=83.75  E-value=18  Score=29.32  Aligned_cols=102  Identities=12%  Similarity=0.059  Sum_probs=52.7

Q ss_pred             CCeEEEEcCccc--H-hHHHHHhhCCeEEEEcC-CHHHHHHHhcCCCceEEeCCCCchhhhhhccCCCCceeeEEEcccc
Q 037961           34 RNLAWDVGTRSG--Q-AAASLAQIYQHVIATDT-SPKQLKFAIKLPNIRYQLTPTMSITELEQNVATQSSVDLVTIASAL  109 (262)
Q Consensus        34 ~~~vlDvGcG~G--~-~~~~l~~~~~~v~~vD~-s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~  109 (262)
                      +.++|=.|++.|  . ++..+++.|++|+.+.. +++.++...+..++.+...|..+...+....-..+.+|+++.+.+.
T Consensus         6 ~k~vlItGasggIG~~~a~~l~~~G~~v~~~~~~~~~~~~~l~~~~~~~~~~~D~~~~~~~~~~~~~~~~id~li~~ag~   85 (237)
T PRK12742          6 GKKVLVLGGSRGIGAAIVRRFVTDGANVRFTYAGSKDAAERLAQETGATAVQTDSADRDAVIDVVRKSGALDILVVNAGI   85 (237)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHhCCeEEecCCCCHHHHHHHHHHhCCCcEEEECCCC
Confidence            456787777544  2 33445567888887754 4444444332224455555511111122211123568999876544


Q ss_pred             ccC------ChhH--------------HHHHHHHhhcCCCeEEEEEe
Q 037961          110 HWF------DLPQ--------------FYKQVKWVLKKPSGVIAAWT  136 (262)
Q Consensus       110 ~~~------d~~~--------------~l~~~~r~Lk~pgG~l~i~~  136 (262)
                      ...      +++.              +.+++.+.++ .+|.++...
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~g~iv~is  131 (237)
T PRK12742         86 AVFGDALELDADDIDRLFKINIHAPYHASVEAARQMP-EGGRIIIIG  131 (237)
T ss_pred             CCCCCcccCCHHHHHHHHhHHHHHHHHHHHHHHHHHh-cCCeEEEEe
Confidence            321      1211              2356667777 788877644

>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]

Probab=83.72  E-value=19  Score=31.83  Aligned_cols=100  Identities=16%  Similarity=0.123  Sum_probs=66.2

Q ss_pred             CCCCeEEEEcCcc-cHhHHHHHhh-C-CeEEEEcCCHHHHHHHhcCCCceEEeCCCC-ch-hhhhhccCCCCceeeEEEc
Q 037961           32 PKRNLAWDVGTRS-GQAAASLAQI-Y-QHVIATDTSPKQLKFAIKLPNIRYQLTPTM-SI-TELEQNVATQSSVDLVTIA  106 (262)
Q Consensus        32 ~~~~~vlDvGcG~-G~~~~~l~~~-~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~D~V~~~  106 (262)
                      +++.+|.-+|||. |..+.+-+.. + .+++++|+++.-++.|+++-...+++..+. .. +.+.++  .++..|.++- 
T Consensus       184 ~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~fGAT~~vn~~~~~~vv~~i~~~--T~gG~d~~~e-  260 (366)
T COG1062         184 EPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKFGATHFVNPKEVDDVVEAIVEL--TDGGADYAFE-  260 (366)
T ss_pred             CCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHhcCCceeecchhhhhHHHHHHHh--cCCCCCEEEE-
Confidence            5778888899985 6666665553 4 479999999999999998755555544311 01 111222  3445666542 


Q ss_pred             cccccCChhHHHHHHHHhhcCCCeEEEEEecCC
Q 037961          107 SALHWFDLPQFYKQVKWVLKKPSGVIAAWTYTM  139 (262)
Q Consensus       107 ~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~~~  139 (262)
                          -......++.....+. .+|..++.....
T Consensus       261 ----~~G~~~~~~~al~~~~-~~G~~v~iGv~~  288 (366)
T COG1062         261 ----CVGNVEVMRQALEATH-RGGTSVIIGVAG  288 (366)
T ss_pred             ----ccCCHHHHHHHHHHHh-cCCeEEEEecCC
Confidence                1233458899999999 899999866654

>cd08268 MDR2 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=83.71  E-value=20  Score=30.35  Aligned_cols=98  Identities=17%  Similarity=0.167  Sum_probs=58.4

Q ss_pred             CCCCeEEEEcC--cccHhHHHHHh-hCCeEEEEcCCHHHHHHHhcCCCceEEeCCCCch-hhhhhccCCCCceeeEEEcc
Q 037961           32 PKRNLAWDVGT--RSGQAAASLAQ-IYQHVIATDTSPKQLKFAIKLPNIRYQLTPTMSI-TELEQNVATQSSVDLVTIAS  107 (262)
Q Consensus        32 ~~~~~vlDvGc--G~G~~~~~l~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~D~V~~~~  107 (262)
                      .++..++=.|+  +.|..+..++. .+.+++.++.++...+.++......+...+.... ..+... .....+|+++...
T Consensus       143 ~~~~~vli~g~~~~~g~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~d~vi~~~  221 (328)
T cd08268         143 RPGDSVLITAASSSVGLAAIQIANAAGATVIATTRTSEKRDALLALGAAHVIVTDEEDLVAEVLRI-TGGKGVDVVFDPV  221 (328)
T ss_pred             CCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHcCCCEEEecCCccHHHHHHHH-hCCCCceEEEECC
Confidence            46677887886  34555555554 4889999999988877775432112222111001 111111 1234689998643


Q ss_pred             ccccCChhHHHHHHHHhhcCCCeEEEEEec
Q 037961          108 ALHWFDLPQFYKQVKWVLKKPSGVIAAWTY  137 (262)
Q Consensus       108 ~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~  137 (262)
                      .      .....++.+.++ ++|+++.+..
T Consensus       222 ~------~~~~~~~~~~l~-~~g~~v~~g~  244 (328)
T cd08268         222 G------GPQFAKLADALA-PGGTLVVYGA  244 (328)
T ss_pred             c------hHhHHHHHHhhc-cCCEEEEEEe
Confidence            3      145677888999 9999987653

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional

Probab=83.58  E-value=21  Score=30.64  Aligned_cols=98  Identities=13%  Similarity=0.042  Sum_probs=59.5

Q ss_pred             CCCCeEEEEc-C-cccHhHHHHHhh-CCeEEEEcCCHHHHHHHhcCCCceEEeCCCCch-hhhhhccCCCCceeeEEEcc
Q 037961           32 PKRNLAWDVG-T-RSGQAAASLAQI-YQHVIATDTSPKQLKFAIKLPNIRYQLTPTMSI-TELEQNVATQSSVDLVTIAS  107 (262)
Q Consensus        32 ~~~~~vlDvG-c-G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~D~V~~~~  107 (262)
                      .++.+++=.| + +.|..+..+++. |.++++++.++...+.+++..-..++..+.... ..+... .....+|+|+-..
T Consensus       139 ~~g~~vlI~g~~g~ig~~~~~lak~~G~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~d~vl~~~  217 (327)
T PRK10754        139 KPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGSAQKAQRAKKAGAWQVINYREENIVERVKEI-TGGKKVRVVYDSV  217 (327)
T ss_pred             CCCCEEEEEeCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHCCCCEEEcCCCCcHHHHHHHH-cCCCCeEEEEECC
Confidence            4566766654 3 347777777764 889999999998888776543212222221111 111222 1334689888432


Q ss_pred             ccccCChhHHHHHHHHhhcCCCeEEEEEec
Q 037961          108 ALHWFDLPQFYKQVKWVLKKPSGVIAAWTY  137 (262)
Q Consensus       108 ~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~  137 (262)
                      .      ...+.+..+.|+ ++|+++.+..
T Consensus       218 ~------~~~~~~~~~~l~-~~g~~v~~g~  240 (327)
T PRK10754        218 G------KDTWEASLDCLQ-RRGLMVSFGN  240 (327)
T ss_pred             c------HHHHHHHHHHhc-cCCEEEEEcc
Confidence            2      246677889999 9999997553

>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes

Probab=83.56  E-value=1.4  Score=36.96  Aligned_cols=51  Identities=25%  Similarity=0.247  Sum_probs=38.2

Q ss_pred             HHHHHHHhhCC--CCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHh
Q 037961           22 ELFKLIASKTP--KRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAI   72 (262)
Q Consensus        22 ~~~~~l~~~~~--~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~   72 (262)
                      .+..+|.+.++  +..+++|+=||+|.++..+...+..|+.-|+++..+...+
T Consensus         7 ~l~~~I~~~ip~~~~~~~vepF~G~g~V~~~~~~~~~~vi~ND~~~~l~~~~~   59 (260)
T PF02086_consen    7 KLAKWIIELIPKNKHKTYVEPFAGGGSVFLNLKQPGKRVIINDINPDLINFWK   59 (260)
T ss_dssp             GGHHHHHHHS-S-S-SEEEETT-TTSHHHHCC---SSEEEEEES-HHHHHHHH
T ss_pred             HHHHHHHHHcCCCCCCEEEEEecchhHHHHHhcccccceeeeechHHHHHHHH
Confidence            45777888887  5899999999999999998888999999999998877665

There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.

>cd08276 MDR7 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=83.49  E-value=22  Score=30.36  Aligned_cols=97  Identities=24%  Similarity=0.182  Sum_probs=57.9

Q ss_pred             CCCCeEEEEcCc-ccHhHHHHHh-hCCeEEEEcCCHHHHHHHhcCCCceEEeCC-C-Cch-hhhhhccCCCCceeeEEEc
Q 037961           32 PKRNLAWDVGTR-SGQAAASLAQ-IYQHVIATDTSPKQLKFAIKLPNIRYQLTP-T-MSI-TELEQNVATQSSVDLVTIA  106 (262)
Q Consensus        32 ~~~~~vlDvGcG-~G~~~~~l~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~-~-~~~-~~~~~~~~~~~~~D~V~~~  106 (262)
                      .++.+|+=.|+| .|..+..+++ .|.++++++.++...+.+++. .+...... . ... ..+... .....+|+++..
T Consensus       159 ~~g~~vli~g~g~~g~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~i~~  236 (336)
T cd08276         159 KPGDTVLVQGTGGVSLFALQFAKAAGARVIATSSSDEKLERAKAL-GADHVINYRTTPDWGEEVLKL-TGGRGVDHVVEV  236 (336)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHc-CCCEEEcCCcccCHHHHHHHH-cCCCCCcEEEEC
Confidence            455666555654 3555555555 488999999999888877764 22222111 1 111 111112 133468999854


Q ss_pred             cccccCChhHHHHHHHHhhcCCCeEEEEEec
Q 037961          107 SALHWFDLPQFYKQVKWVLKKPSGVIAAWTY  137 (262)
Q Consensus       107 ~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~  137 (262)
                      ..      ...+..+.+.|+ ++|+++....
T Consensus       237 ~~------~~~~~~~~~~l~-~~G~~v~~g~  260 (336)
T cd08276         237 GG------PGTLAQSIKAVA-PGGVISLIGF  260 (336)
T ss_pred             CC------hHHHHHHHHhhc-CCCEEEEEcc
Confidence            21      346788899999 9999987554

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD)

Probab=83.42  E-value=19  Score=31.10  Aligned_cols=99  Identities=16%  Similarity=0.153  Sum_probs=61.8

Q ss_pred             CCCCCeEEEEcCc--ccHhHHHHHhh-CCeEEEEcCCHHHHHHHhcCCCceEEe-CCCCch-hhhhhccCCCCceeeEEE
Q 037961           31 TPKRNLAWDVGTR--SGQAAASLAQI-YQHVIATDTSPKQLKFAIKLPNIRYQL-TPTMSI-TELEQNVATQSSVDLVTI  105 (262)
Q Consensus        31 ~~~~~~vlDvGcG--~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~D~V~~  105 (262)
                      ..++.++|=.|+|  .|..+..+++. |.+++++..+++..+.+++.. +..+. ...... ..+..+ .+...+|+|+.
T Consensus       163 ~~~~~~vlV~g~~~~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g-~~~v~~~~~~~~~~~~~~~-~~~~~vd~vl~  240 (341)
T cd08297         163 LKPGDWVVISGAGGGLGHLGVQYAKAMGLRVIAIDVGDEKLELAKELG-ADAFVDFKKSDDVEAVKEL-TGGGGAHAVVV  240 (341)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcC-CcEEEcCCCccHHHHHHHH-hcCCCCCEEEE
Confidence            3466788877775  57777777764 889999999988877775532 22221 111000 112222 13456999984


Q ss_pred             ccccccCChhHHHHHHHHhhcCCCeEEEEEec
Q 037961          106 ASALHWFDLPQFYKQVKWVLKKPSGVIAAWTY  137 (262)
Q Consensus       106 ~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~  137 (262)
                      ...     ....+.++.+.|+ ++|+++.+..
T Consensus       241 ~~~-----~~~~~~~~~~~l~-~~g~~v~~g~  266 (341)
T cd08297         241 TAV-----SAAAYEQALDYLR-PGGTLVCVGL  266 (341)
T ss_pred             cCC-----chHHHHHHHHHhh-cCCEEEEecC
Confidence            211     1356788999999 9999998653

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha

>COG0863 DNA modification methylase [DNA replication, recombination, and repair]

Probab=83.38  E-value=4.1  Score=34.83  Aligned_cols=59  Identities=15%  Similarity=0.242  Sum_probs=49.9

Q ss_pred             hCCCChHHHHHHHHhh-CCCCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhc
Q 037961           15 ARPNYPKELFKLIASK-TPKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIK   73 (262)
Q Consensus        15 ~rp~yp~~~~~~l~~~-~~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~   73 (262)
                      +-...|.+++..+... ..++..|||.=+|+|.........+..++|+|+++..++.+.+
T Consensus       203 hp~~~P~~l~~r~i~~~s~~~diVlDpf~GsGtt~~aa~~~~r~~ig~e~~~~y~~~~~~  262 (302)
T COG0863         203 HPAQKPLALIERLIRDYSFPGDIVLDPFAGSGTTGIAAKNLGRRFIGIEINPEYVEVALK  262 (302)
T ss_pred             CCCCChHHHHHHHHHhcCCCCCEEeecCCCCChHHHHHHHcCCceEEEecCHHHHHHHHH
Confidence            3345677887776654 4688999999999999999998899999999999999998875

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=83.29  E-value=3.2  Score=31.53  Aligned_cols=99  Identities=24%  Similarity=0.257  Sum_probs=56.6

Q ss_pred             EEEEcCcc-cH-hHHHHHhhCCeEEEEcCCHHHHHHHhcCCCceEEeCC---CCchh-hhhhccCCCCceeeEEEccccc
Q 037961           37 AWDVGTRS-GQ-AAASLAQIYQHVIATDTSPKQLKFAIKLPNIRYQLTP---TMSIT-ELEQNVATQSSVDLVTIASALH  110 (262)
Q Consensus        37 vlDvGcG~-G~-~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~D~V~~~~~~~  110 (262)
                      |+=+|+|. |. ++..|++.+.+|+.++-++ .++..++. .+.+...+   ..... ...........+|+|+..  .-
T Consensus         1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~-~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~--vK   76 (151)
T PF02558_consen    1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP-RLEAIKEQ-GLTITGPDGDETVQPPIVISAPSADAGPYDLVIVA--VK   76 (151)
T ss_dssp             EEEESTSHHHHHHHHHHHHTTCEEEEEESHH-HHHHHHHH-CEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE---SS
T ss_pred             CEEECcCHHHHHHHHHHHHCCCceEEEEccc-cHHhhhhe-eEEEEecccceecccccccCcchhccCCCcEEEEE--ec
Confidence            34567775 43 3444556799999999998 66554431 12211111   00000 000001135679999864  33


Q ss_pred             cCChhHHHHHHHHhhcCCCeEEEEEecCCC
Q 037961          111 WFDLPQFYKQVKWVLKKPSGVIAAWTYTMP  140 (262)
Q Consensus       111 ~~d~~~~l~~~~r~Lk~pgG~l~i~~~~~~  140 (262)
                      ..+.+.+++.+.+.+. |+..++++..+..
T Consensus        77 a~~~~~~l~~l~~~~~-~~t~iv~~qNG~g  105 (151)
T PF02558_consen   77 AYQLEQALQSLKPYLD-PNTTIVSLQNGMG  105 (151)
T ss_dssp             GGGHHHHHHHHCTGEE-TTEEEEEESSSSS
T ss_pred             ccchHHHHHHHhhccC-CCcEEEEEeCCCC
Confidence            3466779999999999 8988777665543

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]

Probab=83.21  E-value=0.83  Score=39.98  Aligned_cols=42  Identities=19%  Similarity=0.191  Sum_probs=37.5

Q ss_pred             CCCCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHh
Q 037961           31 TPKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAI   72 (262)
Q Consensus        31 ~~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~   72 (262)
                      .+++..|+|--.|||.+....+..|+-|+|.|++=.|+...|
T Consensus       206 v~pGdivyDPFVGTGslLvsaa~FGa~viGtDIDyr~vragr  247 (421)
T KOG2671|consen  206 VKPGDIVYDPFVGTGSLLVSAAHFGAYVIGTDIDYRTVRAGR  247 (421)
T ss_pred             cCCCCEEecCccccCceeeehhhhcceeeccccchheeeccc
Confidence            368999999999999999999999999999999988887543

>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2

Probab=83.11  E-value=17  Score=31.09  Aligned_cols=98  Identities=11%  Similarity=0.068  Sum_probs=60.0

Q ss_pred             CCCCCeEEEEcC-c-ccHhHHHHHhh-CCeEEEEcCCHHHHHHHhcCCCceEEeCC-CCch-hhhhhccCCCCceeeEEE
Q 037961           31 TPKRNLAWDVGT-R-SGQAAASLAQI-YQHVIATDTSPKQLKFAIKLPNIRYQLTP-TMSI-TELEQNVATQSSVDLVTI  105 (262)
Q Consensus        31 ~~~~~~vlDvGc-G-~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~D~V~~  105 (262)
                      ..++..||=.|+ | .|..+..+++. |.+++.+.-+++..+.+++. ++...... .... ..+..+ .....+|+|+.
T Consensus       137 ~~~g~~vlI~g~~g~ig~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~i~~~-~~~~~~d~v~d  214 (324)
T cd08292         137 VKPGQWLIQNAAGGAVGKLVAMLAAARGINVINLVRRDAGVAELRAL-GIGPVVSTEQPGWQDKVREA-AGGAPISVALD  214 (324)
T ss_pred             CCCCCEEEEcccccHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHhc-CCCEEEcCCCchHHHHHHHH-hCCCCCcEEEE
Confidence            356777777775 3 57777777764 88888887777777776654 33322211 1111 112222 13346999985


Q ss_pred             ccccccCChhHHHHHHHHhhcCCCeEEEEEec
Q 037961          106 ASALHWFDLPQFYKQVKWVLKKPSGVIAAWTY  137 (262)
Q Consensus       106 ~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~  137 (262)
                      ...    .  ..+.++.+.|+ ++|+++.+..
T Consensus       215 ~~g----~--~~~~~~~~~l~-~~g~~v~~g~  239 (324)
T cd08292         215 SVG----G--KLAGELLSLLG-EGGTLVSFGS  239 (324)
T ss_pred             CCC----C--hhHHHHHHhhc-CCcEEEEEec
Confidence            422    1  35678899999 9999987653

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina

>PF08484 Methyltransf_14: C-methyltransferase C-terminal domain; InterPro: IPR013691 This domain is found in bacterial C-methyltransferase proteins, often together with other methyltransferase domains such as IPR013216 from INTERPRO or IPR013217 from INTERPRO

Probab=82.83  E-value=9.2  Score=29.83  Aligned_cols=110  Identities=15%  Similarity=0.166  Sum_probs=54.5

Q ss_pred             hHHHHHHHHhhCCCChHHHHHHHHhhCCCCCeEEEEcCcccHhHH-HHHhhCCe--EEEEcCCHHHHHHHhcCCC--ceE
Q 037961            5 FIKQANLYAVARPNYPKELFKLIASKTPKRNLAWDVGTRSGQAAA-SLAQIYQH--VIATDTSPKQLKFAIKLPN--IRY   79 (262)
Q Consensus         5 F~~~a~~Y~~~rp~yp~~~~~~l~~~~~~~~~vlDvGcG~G~~~~-~l~~~~~~--v~~vD~s~~~~~~a~~~~~--~~~   79 (262)
                      |.+-++..++.|    .++.+.|......+.+|.=.|+|+...+. ..+....+  ...+|.+|.  .+.+-.|+  +.+
T Consensus        43 y~~f~~~~~~~~----~~l~~~L~~~~~~gk~I~~yGA~~kg~tlln~~g~~~~~I~~vvD~np~--K~G~~~PGt~ipI  116 (160)
T PF08484_consen   43 YENFAKRVEQSK----AELREFLEKLKAEGKRIAGYGAGAKGNTLLNYFGLDNDLIDYVVDDNPL--KQGKYLPGTHIPI  116 (160)
T ss_dssp             HHHHHHHHHHHH----HHHHHHHHHHHHTT--EEEE---SHHHHHHHHHT--TTTS--EEES-GG--GTTEE-TTT--EE
T ss_pred             HHHHHHHHHHHH----HHHHHHHHHHHHcCCEEEEECcchHHHHHHHHhCCCcceeEEEEeCChh--hcCcccCCCCCeE
Confidence            334444444443    45555555554577889999999976654 44444333  347788755  11122243  444


Q ss_pred             EeCCCCchhhhhhccCCCCceeeEEEccccccCChhHHHHHHHHhhcCCCeEEEE
Q 037961           80 QLTPTMSITELEQNVATQSSVDLVTIASALHWFDLPQFYKQVKWVLKKPSGVIAA  134 (262)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i  134 (262)
                      +..+        .+  .....|.|+.   +.|-=.+..++++...++ .||.|++
T Consensus       117 ~~p~--------~l--~~~~pd~viv---law~y~~EI~~~~~~~~~-~gg~fi~  157 (160)
T PF08484_consen  117 VSPE--------EL--KERKPDYVIV---LAWNYKDEIIEKLREYLE-RGGKFIV  157 (160)
T ss_dssp             EEGG--------G----SS--SEEEE---S-GGGHHHHHHHTHHHHH-TT-EEEE
T ss_pred             CCHH--------HH--hhCCCCEEEE---cChhhHHHHHHHHHHHHh-cCCEEEE
Confidence            4322        11  3445688775   334445778888999999 8999987

; PDB: 4E2X_A 3NDJ_A 3NDI_A 4E32_A 4E33_A 4E31_A 4E2Y_A 4E2W_A 4E2Z_A 4E30_A.

>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=82.50  E-value=19  Score=31.24  Aligned_cols=95  Identities=16%  Similarity=0.147  Sum_probs=58.5

Q ss_pred             CCCCCeEEEEcC-c-ccHhHHHHHhh-CCeEEEEcCCHHHHHHHhcCCCceEEeCC-CCchhhhhhccCCCCceeeEEEc
Q 037961           31 TPKRNLAWDVGT-R-SGQAAASLAQI-YQHVIATDTSPKQLKFAIKLPNIRYQLTP-TMSITELEQNVATQSSVDLVTIA  106 (262)
Q Consensus        31 ~~~~~~vlDvGc-G-~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~D~V~~~  106 (262)
                      ..++.+||=.|+ | .|..+..+++. ++++++++.+. ..+.+++. ++..+... ...... ... .....+|+|+..
T Consensus       175 ~~~g~~vlI~g~~g~ig~~~~~~a~~~g~~vi~~~~~~-~~~~~~~~-g~~~~~~~~~~~~~~-~~~-~~~~~~d~vi~~  250 (350)
T cd08274         175 VGAGETVLVTGASGGVGSALVQLAKRRGAIVIAVAGAA-KEEAVRAL-GADTVILRDAPLLAD-AKA-LGGEPVDVVADV  250 (350)
T ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCch-hhHHHHhc-CCeEEEeCCCccHHH-HHh-hCCCCCcEEEec
Confidence            356788888887 3 46676666664 88899888664 66666654 23332222 111111 111 134569999854


Q ss_pred             cccccCChhHHHHHHHHhhcCCCeEEEEEe
Q 037961          107 SALHWFDLPQFYKQVKWVLKKPSGVIAAWT  136 (262)
Q Consensus       107 ~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~  136 (262)
                      ..      ...+..+.+.|+ ++|+++.+.
T Consensus       251 ~g------~~~~~~~~~~l~-~~G~~v~~g  273 (350)
T cd08274         251 VG------GPLFPDLLRLLR-PGGRYVTAG  273 (350)
T ss_pred             CC------HHHHHHHHHHhc-cCCEEEEec
Confidence            33      246788999999 999998654

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2

Probab=82.07  E-value=1.8  Score=38.75  Aligned_cols=94  Identities=17%  Similarity=0.178  Sum_probs=62.7

Q ss_pred             CCCeEEEEcCcccHhHHHHHhh---CCeEEEEcCCHHHHHHHhcC-------C-CceEEeCCCCchhhhhhcc-CCCCce
Q 037961           33 KRNLAWDVGTRSGQAAASLAQI---YQHVIATDTSPKQLKFAIKL-------P-NIRYQLTPTMSITELEQNV-ATQSSV  100 (262)
Q Consensus        33 ~~~~vlDvGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~-------~-~~~~~~~~~~~~~~~~~~~-~~~~~~  100 (262)
                      ..-++||.=+|+|.=+...+..   ..+|++-|+|++.++..+++       . .+++...|      +..+- .....|
T Consensus        49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~D------An~ll~~~~~~f  122 (377)
T PF02005_consen   49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMD------ANVLLYSRQERF  122 (377)
T ss_dssp             S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-------HHHHHCHSTT-E
T ss_pred             CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhh------HHHHhhhccccC
Confidence            3468999999999888877765   35899999999999988753       2 24444433      43321 246779


Q ss_pred             eeEEEccccccC-ChhHHHHHHHHhhcCCCeEEEEEec
Q 037961          101 DLVTIASALHWF-DLPQFYKQVKWVLKKPSGVIAAWTY  137 (262)
Q Consensus       101 D~V~~~~~~~~~-d~~~~l~~~~r~Lk~pgG~l~i~~~  137 (262)
                      |+|=..    -+ .+..++..+.+.++ .||.|.+...
T Consensus       123 D~IDlD----PfGSp~pfldsA~~~v~-~gGll~vTaT  155 (377)
T PF02005_consen  123 DVIDLD----PFGSPAPFLDSALQAVK-DGGLLCVTAT  155 (377)
T ss_dssp             EEEEE------SS--HHHHHHHHHHEE-EEEEEEEEE-
T ss_pred             CEEEeC----CCCCccHhHHHHHHHhh-cCCEEEEecc
Confidence            998632    12 46679999999999 8999998443

1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.

>PRK08177 short chain dehydrogenase; Provisional

Probab=82.01  E-value=16  Score=29.57  Aligned_cols=74  Identities=20%  Similarity=0.199  Sum_probs=42.4

Q ss_pred             eEEEEcCcccH---hHHHHHhhCCeEEEEcCCHHHHHHHhcCCCceEEeCCCCchhhhhhcc--CCCCceeeEEEcccc
Q 037961           36 LAWDVGTRSGQ---AAASLAQIYQHVIATDTSPKQLKFAIKLPNIRYQLTPTMSITELEQNV--ATQSSVDLVTIASAL  109 (262)
Q Consensus        36 ~vlDvGcG~G~---~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~D~V~~~~~~  109 (262)
                      ++|=.|+..|.   ++..|++.|.+|++++.++.-.+..+...++.+...|.-+..++..+-  +..+.+|+|+.+.+.
T Consensus         3 ~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~id~vi~~ag~   81 (225)
T PRK08177          3 TALIIGASRGLGLGLVDRLLERGWQVTATVRGPQQDTALQALPGVHIEKLDMNDPASLDQLLQRLQGQRFDLLFVNAGI   81 (225)
T ss_pred             EEEEeCCCchHHHHHHHHHHhCCCEEEEEeCCCcchHHHHhccccceEEcCCCCHHHHHHHHHHhhcCCCCEEEEcCcc
Confidence            46666664432   455566678999999988766655554455666666611111121111  233578999876543

>cd05288 PGDH Prostaglandin dehydrogenases

Probab=81.60  E-value=23  Score=30.37  Aligned_cols=96  Identities=13%  Similarity=0.103  Sum_probs=60.3

Q ss_pred             CCCCeEEEEcC--cccHhHHHHHhh-CCeEEEEcCCHHHHHHHhc-CCCceEEeCCCCch-hhhhhccCCCCceeeEEEc
Q 037961           32 PKRNLAWDVGT--RSGQAAASLAQI-YQHVIATDTSPKQLKFAIK-LPNIRYQLTPTMSI-TELEQNVATQSSVDLVTIA  106 (262)
Q Consensus        32 ~~~~~vlDvGc--G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~D~V~~~  106 (262)
                      .++..||=.|+  +.|..+..+++. |.++++++.++...+.+++ ..-..++....... ..+..+.  .+.+|+|+..
T Consensus       144 ~~~~~vlI~g~~g~ig~~~~~~a~~~G~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~~~~--~~~~d~vi~~  221 (329)
T cd05288         144 KPGETVVVSAAAGAVGSVVGQIAKLLGARVVGIAGSDEKCRWLVEELGFDAAINYKTPDLAEALKEAA--PDGIDVYFDN  221 (329)
T ss_pred             CCCCEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhhcCCceEEecCChhHHHHHHHhc--cCCceEEEEc
Confidence            46677777774  347777777664 8899999999988887766 32112222221001 1122222  2569998854


Q ss_pred             cccccCChhHHHHHHHHhhcCCCeEEEEEe
Q 037961          107 SALHWFDLPQFYKQVKWVLKKPSGVIAAWT  136 (262)
Q Consensus       107 ~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~  136 (262)
                      ..      ...+..+.+.|+ ++|+++.+.
T Consensus       222 ~g------~~~~~~~~~~l~-~~G~~v~~g  244 (329)
T cd05288         222 VG------GEILDAALTLLN-KGGRIALCG  244 (329)
T ss_pred             ch------HHHHHHHHHhcC-CCceEEEEe
Confidence            22      247888899999 999988754

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino

>cd08244 MDR_enoyl_red Possible enoyl reductase

Probab=81.52  E-value=30  Score=29.47  Aligned_cols=97  Identities=11%  Similarity=0.106  Sum_probs=60.3

Q ss_pred             CCCCeEEEEcC--cccHhHHHHHhh-CCeEEEEcCCHHHHHHHhcCCCceE-EeCCCCch-hhhhhccCCCCceeeEEEc
Q 037961           32 PKRNLAWDVGT--RSGQAAASLAQI-YQHVIATDTSPKQLKFAIKLPNIRY-QLTPTMSI-TELEQNVATQSSVDLVTIA  106 (262)
Q Consensus        32 ~~~~~vlDvGc--G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~D~V~~~  106 (262)
                      .++..||=.|+  +.|..+..+++. |.++++++.++...+.+++.. +.. +....... ..+... .....+|+|+..
T Consensus       141 ~~~~~vlI~g~~~~~g~~~~~la~~~g~~v~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~-~~~~~~d~vl~~  218 (324)
T cd08244         141 TPGDVVLVTAAAGGLGSLLVQLAKAAGATVVGAAGGPAKTALVRALG-ADVAVDYTRPDWPDQVREA-LGGGGVTVVLDG  218 (324)
T ss_pred             CCCCEEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcC-CCEEEecCCccHHHHHHHH-cCCCCceEEEEC
Confidence            46667777774  346777777764 889999999998888876542 222 22111111 111112 133469999864


Q ss_pred             cccccCChhHHHHHHHHhhcCCCeEEEEEec
Q 037961          107 SALHWFDLPQFYKQVKWVLKKPSGVIAAWTY  137 (262)
Q Consensus       107 ~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~  137 (262)
                      ..      .....++.+.|+ ++|+++.+..
T Consensus       219 ~g------~~~~~~~~~~l~-~~g~~v~~g~  242 (324)
T cd08244         219 VG------GAIGRAALALLA-PGGRFLTYGW  242 (324)
T ss_pred             CC------hHhHHHHHHHhc-cCcEEEEEec
Confidence            32      224588899999 9999987553

Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr

>TIGR00497 hsdM type I restriction system adenine methylase (hsdM)

Probab=81.50  E-value=6.6  Score=36.62  Aligned_cols=112  Identities=14%  Similarity=0.218  Sum_probs=68.0

Q ss_pred             hHHHHHHHHhhCC----CCCeEEEEcCcccHhHHHHHhh---C---CeEEEEcCCHHHHHHHhcC---CC-----ceEEe
Q 037961           20 PKELFKLIASKTP----KRNLAWDVGTRSGQAAASLAQI---Y---QHVIATDTSPKQLKFAIKL---PN-----IRYQL   81 (262)
Q Consensus        20 p~~~~~~l~~~~~----~~~~vlDvGcG~G~~~~~l~~~---~---~~v~~vD~s~~~~~~a~~~---~~-----~~~~~   81 (262)
                      |.++.+.+.....    +...+.|..||+|.+.......   +   ..++|-+..+.+...++.+   ..     .....
T Consensus       200 p~~Iv~l~~~~~~~~~dp~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~~~t~~~~~  279 (501)
T TIGR00497       200 PQDISELLARIAIGKKDTVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNIDYANFNIIN  279 (501)
T ss_pred             cHHHHHHHHHHhccCCCCCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCCccccCccc
Confidence            6777777655432    4467899999999988654431   2   3589999999999888753   11     11222


Q ss_pred             CCCCchhhhhhccCCCCceeeEEEcccc--cc-------------------CC-----hhHHHHHHHHhhcCCCeEEEEE
Q 037961           82 TPTMSITELEQNVATQSSVDLVTIASAL--HW-------------------FD-----LPQFYKQVKWVLKKPSGVIAAW  135 (262)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~D~V~~~~~~--~~-------------------~d-----~~~~l~~~~r~Lk~pgG~l~i~  135 (262)
                      ++.+...+.    ....+||.|+++..+  .|                   +.     --.++..+..+|+ +||+.++.
T Consensus       280 ~dtl~~~d~----~~~~~~D~v~~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~afi~h~~~~L~-~gG~~aiI  354 (501)
T TIGR00497       280 ADTLTTKEW----ENENGFEVVVSNPPYSISWAGDKKSNLVSDVRFKDAGTLAPNSKADLAFVLHALYVLG-QEGTAAIV  354 (501)
T ss_pred             CCcCCCccc----cccccCCEEeecCCcccccccccccccccccchhcccCCCCCchhhHHHHHHHHHhcC-CCCeEEEE
Confidence            221110010    123458888775532  12                   10     1127888999999 99987764


Q ss_pred             e
Q 037961          136 T  136 (262)
Q Consensus       136 ~  136 (262)
                      .
T Consensus       355 ~  355 (501)
T TIGR00497       355 C  355 (501)
T ss_pred             e
Confidence            3

Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=81.28  E-value=13  Score=31.77  Aligned_cols=98  Identities=18%  Similarity=0.168  Sum_probs=56.9

Q ss_pred             eEEEEcCcc-c-HhHHHHHhhCCeEEEEcCCHHHHHHHhcCCCceEEeCC-CCchhhhhhccCCCCceeeEEEccccccC
Q 037961           36 LAWDVGTRS-G-QAAASLAQIYQHVIATDTSPKQLKFAIKLPNIRYQLTP-TMSITELEQNVATQSSVDLVTIASALHWF  112 (262)
Q Consensus        36 ~vlDvGcG~-G-~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~D~V~~~~~~~~~  112 (262)
                      .|+=+|+|. | .++..|++.|.+|+.++.+++.++..++. ++....++ ........+.. +...+|+|+...--  .
T Consensus         2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~-~~~~~d~vila~k~--~   77 (304)
T PRK06522          2 KIAILGAGAIGGLFGAALAQAGHDVTLVARRGAHLDALNEN-GLRLEDGEITVPVLAADDPA-ELGPQDLVILAVKA--Y   77 (304)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEEECChHHHHHHHHc-CCcccCCceeecccCCCChh-HcCCCCEEEEeccc--c
Confidence            467788886 3 35555667789999999988877766543 22221111 00000001110 11568999865432  3


Q ss_pred             ChhHHHHHHHHhhcCCCeEEEEEecC
Q 037961          113 DLPQFYKQVKWVLKKPSGVIAAWTYT  138 (262)
Q Consensus       113 d~~~~l~~~~r~Lk~pgG~l~i~~~~  138 (262)
                      +.+.+++.+...+. ++..++....+
T Consensus        78 ~~~~~~~~l~~~l~-~~~~iv~~~nG  102 (304)
T PRK06522         78 QLPAALPSLAPLLG-PDTPVLFLQNG  102 (304)
T ss_pred             cHHHHHHHHhhhcC-CCCEEEEecCC
Confidence            56778888888888 77666654433

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=81.25  E-value=19  Score=32.64  Aligned_cols=111  Identities=16%  Similarity=0.049  Sum_probs=58.6

Q ss_pred             CeEEEEcCcc--cHhHHHHHhhCCeEEEEcCCHHHHHHHhcCCCceEEeCC-C-C-----chhhhhhccCCCCceeeEEE
Q 037961           35 NLAWDVGTRS--GQAAASLAQIYQHVIATDTSPKQLKFAIKLPNIRYQLTP-T-M-----SITELEQNVATQSSVDLVTI  105 (262)
Q Consensus        35 ~~vlDvGcG~--G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~-~-~-----~~~~~~~~~~~~~~~D~V~~  105 (262)
                      .+|.=+|.|.  +..+..|++.|.+|+++|.++.-++..+.- .+.+.... . +     ..+...... .....|+|+.
T Consensus         4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~~v~~l~~g-~~~~~e~~l~~~l~~~~~~g~l~~~~-~~~~aDvvii   81 (415)
T PRK11064          4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQHAVDTINRG-EIHIVEPDLDMVVKTAVEGGYLRATT-TPEPADAFLI   81 (415)
T ss_pred             cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHHHHHHHHCC-CCCcCCCCHHHHHHHHhhcCceeeec-ccccCCEEEE
Confidence            3466678875  344555677899999999999988875431 11111111 0 0     000000000 1124688876


Q ss_pred             ccccc-----cC---ChhHHHHHHHHhhcCCCeEEEEEecCCCcccHHHHH
Q 037961          106 ASALH-----WF---DLPQFYKQVKWVLKKPSGVIAAWTYTMPEINESVGA  148 (262)
Q Consensus       106 ~~~~~-----~~---d~~~~l~~~~r~Lk~pgG~l~i~~~~~~~~~~~~~~  148 (262)
                      +-.-.     -.   ....+++.+.+.|+ +|-.++..+...+...+.+..
T Consensus        82 ~vptp~~~~~~~dl~~v~~~~~~i~~~l~-~g~iVI~~STv~pgtt~~~~~  131 (415)
T PRK11064         82 AVPTPFKGDHEPDLTYVEAAAKSIAPVLK-KGDLVILESTSPVGATEQMAE  131 (415)
T ss_pred             EcCCCCCCCCCcChHHHHHHHHHHHHhCC-CCCEEEEeCCCCCCHHHHHHH
Confidence            54432     01   23346678888898 776666544334433344433

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=81.16  E-value=8  Score=33.07  Aligned_cols=38  Identities=21%  Similarity=0.024  Sum_probs=29.1

Q ss_pred             eEEEEcCcc--cHhHHHHHhhCCeEEEEcCCHHHHHHHhc
Q 037961           36 LAWDVGTRS--GQAAASLAQIYQHVIATDTSPKQLKFAIK   73 (262)
Q Consensus        36 ~vlDvGcG~--G~~~~~l~~~~~~v~~vD~s~~~~~~a~~   73 (262)
                      +|.=||+|.  +..+..++..|.+|+..|.+++.++.+.+
T Consensus         3 ~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~   42 (288)
T PRK09260          3 KLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQ   42 (288)
T ss_pred             EEEEECccHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHH
Confidence            466788885  34555667779999999999999987653

>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised

Probab=81.02  E-value=4.7  Score=36.15  Aligned_cols=43  Identities=14%  Similarity=0.060  Sum_probs=33.4

Q ss_pred             hCCCCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHh
Q 037961           30 KTPKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAI   72 (262)
Q Consensus        30 ~~~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~   72 (262)
                      .+.++.+||-|..|.....-.+...-++|++||+||.++...+
T Consensus        32 ~i~~~d~vl~ItSaG~N~L~yL~~~P~~I~aVDlNp~Q~aLle   74 (380)
T PF11899_consen   32 NIGPDDRVLTITSAGCNALDYLLAGPKRIHAVDLNPAQNALLE   74 (380)
T ss_pred             CCCCCCeEEEEccCCchHHHHHhcCCceEEEEeCCHHHHHHHH
Confidence            4568889999976666655556666789999999999988654

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.

>cd08246 crotonyl_coA_red crotonyl-CoA reductase

Probab=80.96  E-value=23  Score=31.51  Aligned_cols=99  Identities=12%  Similarity=0.074  Sum_probs=60.6

Q ss_pred             CCCCCeEEEEcC-c-ccHhHHHHHhh-CCeEEEEcCCHHHHHHHhcCCCceEEeCCCCc---------------------
Q 037961           31 TPKRNLAWDVGT-R-SGQAAASLAQI-YQHVIATDTSPKQLKFAIKLPNIRYQLTPTMS---------------------   86 (262)
Q Consensus        31 ~~~~~~vlDvGc-G-~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~---------------------   86 (262)
                      ..++.+||=.|+ | .|..+..+++. |.++++++.++...+.+++.....++..+..+                     
T Consensus       191 ~~~g~~vlV~ga~g~iG~a~~~lak~~G~~vv~~~~s~~~~~~~~~~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (393)
T cd08246         191 VKPGDNVLIWGASGGLGSMAIQLARAAGANPVAVVSSEEKAEYCRALGAEGVINRRDFDHWGVLPDVNSEAYTAWTKEAR  270 (393)
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHcCCCEEEcccccccccccccccchhhhhhhhccc
Confidence            346678888887 3 46677767664 88999999999999888764211112111000                     


Q ss_pred             -h-hhhhhccCCCC-ceeeEEEccccccCChhHHHHHHHHhhcCCCeEEEEEec
Q 037961           87 -I-TELEQNVATQS-SVDLVTIASALHWFDLPQFYKQVKWVLKKPSGVIAAWTY  137 (262)
Q Consensus        87 -~-~~~~~~~~~~~-~~D~V~~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~  137 (262)
                       + ..+..+. ... .+|+|+....      ...+.+..+.|+ ++|+++.+..
T Consensus       271 ~~~~~v~~l~-~~~~g~d~vid~~g------~~~~~~~~~~l~-~~G~~v~~g~  316 (393)
T cd08246         271 RFGKAIWDIL-GGREDPDIVFEHPG------RATFPTSVFVCD-RGGMVVICAG  316 (393)
T ss_pred             hHHHHHHHHh-CCCCCCeEEEECCc------hHhHHHHHHHhc-cCCEEEEEcc
Confidence             0 0111111 222 5899885422      235778889999 9999997643

Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=80.47  E-value=15  Score=35.05  Aligned_cols=92  Identities=13%  Similarity=0.048  Sum_probs=56.4

Q ss_pred             CeEEEEcCcc-cHh-HHHHHhhCCeEEEEcCCHHHHHHHhcCCCceEEeCCCCchhhhhhccCCCCceeeEEEccccccC
Q 037961           35 NLAWDVGTRS-GQA-AASLAQIYQHVIATDTSPKQLKFAIKLPNIRYQLTPTMSITELEQNVATQSSVDLVTIASALHWF  112 (262)
Q Consensus        35 ~~vlDvGcG~-G~~-~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~~~~  112 (262)
                      ++|+=+|+|. |+. ++.|.+.+.+++.+|.+++.++.+++. +.....+|.-+.+-.++.+..  ..|.|++...    
T Consensus       401 ~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~-g~~v~~GDat~~~~L~~agi~--~A~~vv~~~~----  473 (601)
T PRK03659        401 PQVIIVGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRKY-GYKVYYGDATQLELLRAAGAE--KAEAIVITCN----  473 (601)
T ss_pred             CCEEEecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhC-CCeEEEeeCCCHHHHHhcCCc--cCCEEEEEeC----
Confidence            4566666664 433 233445688999999999999999874 677888872222333444433  4677776422    


Q ss_pred             ChhH--HHHHHHHhhcCCCeEEEE
Q 037961          113 DLPQ--FYKQVKWVLKKPSGVIAA  134 (262)
Q Consensus       113 d~~~--~l~~~~r~Lk~pgG~l~i  134 (262)
                      |.+.  .+....|-+. |...++.
T Consensus       474 d~~~n~~i~~~~r~~~-p~~~Iia  496 (601)
T PRK03659        474 EPEDTMKIVELCQQHF-PHLHILA  496 (601)
T ss_pred             CHHHHHHHHHHHHHHC-CCCeEEE
Confidence            3333  3334555667 7777766

>COG1565 Uncharacterized conserved protein [Function unknown]

Probab=80.24  E-value=7.4  Score=34.48  Aligned_cols=40  Identities=13%  Similarity=0.089  Sum_probs=32.3

Q ss_pred             CCCeEEEEcCcccHhHHHHHhh----------CCeEEEEcCCHHHHHHHh
Q 037961           33 KRNLAWDVGTRSGQAAASLAQI----------YQHVIATDTSPKQLKFAI   72 (262)
Q Consensus        33 ~~~~vlDvGcG~G~~~~~l~~~----------~~~v~~vD~s~~~~~~a~   72 (262)
                      ....++|+|+|+|.+...+++.          ..++.-|++|+...+.-+
T Consensus        77 ~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk  126 (370)
T COG1565          77 APLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQK  126 (370)
T ss_pred             CCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHH
Confidence            4567899999999999887652          358999999999877544

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=80.13  E-value=9.3  Score=32.73  Aligned_cols=38  Identities=26%  Similarity=0.173  Sum_probs=29.3

Q ss_pred             CeEEEEcCcc--cHhHHHHHhhCCeEEEEcCCHHHHHHHh
Q 037961           35 NLAWDVGTRS--GQAAASLAQIYQHVIATDTSPKQLKFAI   72 (262)
Q Consensus        35 ~~vlDvGcG~--G~~~~~l~~~~~~v~~vD~s~~~~~~a~   72 (262)
                      ..|.=+|+|.  +..+..++..|.+|+.+|.+++.++.++
T Consensus         4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~   43 (291)
T PRK06035          4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEEILKNAM   43 (291)
T ss_pred             cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHH
Confidence            3577789996  3455566778999999999999987654

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=80.06  E-value=11  Score=32.18  Aligned_cols=38  Identities=24%  Similarity=-0.011  Sum_probs=28.5

Q ss_pred             CeEEEEcCcc--cHhHHHHHhhCCeEEEEcCCHHHHHHHh
Q 037961           35 NLAWDVGTRS--GQAAASLAQIYQHVIATDTSPKQLKFAI   72 (262)
Q Consensus        35 ~~vlDvGcG~--G~~~~~l~~~~~~v~~vD~s~~~~~~a~   72 (262)
                      ..|.=+|+|.  +..+..++..|.+|+.+|++++.++.++
T Consensus         4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~   43 (287)
T PRK08293          4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAK   43 (287)
T ss_pred             cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHH
Confidence            3567789886  2344556667899999999999887765

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	262
4hg2_A	257	The Structure Of A Putative Type Ii Methyltransfera		2e-24
4htf_A	285	Crystal Structure Of S-Adenosylmethionine-Dependent		4e-06
4htf_B	285	Crystal Structure Of S-Adenosylmethionine-Dependent		4e-06
3g5t_A	299	Crystal Structure Of Trans-Aconitate 3-Methyltransf		1e-05

>pdb|4HG2|A Chain A, The Structure Of A Putative Type Ii Methyltransferase From Anaeromyxobacter Dehalogenans. Length = 257

Iteration: 1
 Score =  109 bits (272), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 70/257 (27%), Positives = 120/257 (46%), Gaps = 17/257 (6%)
Query: 5   FIKQANLYAVARPNYPKELFKLIASKTPKRNLAWDVGTRSGQAAASLAQIYQHVIATDTS 64
           F   A+ Y   RP YP+ LF+ +    P R  A D G  SGQA+  LA+ ++ V A D  
Sbjct: 11  FTPVADAYRAFRPRYPRALFRWLGEVAPARGDALDCGCGSGQASLGLAEFFERVHAVDPG 70
Query: 65  PKQLKFAIKLPNIRYQLTPTMSITELEQNVATQSSVDLVTIASALHWFDLPQFYKQVKWV 124
             Q++ A++ P + Y + P       E      +SVD+   A A HWFDL +F+ +++ V
Sbjct: 71  EAQIRQALRHPRVTYAVAPA------EDTGLPPASVDVAIAAQAXHWFDLDRFWAELRRV 124
Query: 125 LKKPSGVIAAWTYTMPEINESVGAVFKPFDTIDCNPFWAPQRKLVDKKYMSIDFPFEPVD 184
             +P  V AA TY +  ++  V AV            W P+R  V+  Y ++ FPF  ++
Sbjct: 125 -ARPGAVFAAVTYGLTRVDPEVDAVVDRLYHGLLARDWPPERVHVESGYRTLPFPFPELE 183
Query: 185 GYENTGPFDQFVVEKMMDLDDYFKFIRSCSAYQKAKDK-GVELLTENVMEKFKAAWNEDG 243
                       +E+    D +  ++ + SA    + + G + L E +    +AAW    
Sbjct: 184 A-------PPLEIEERWPXDAFLGYLGTWSAVTAHRRRTGADPLAE-IAPALRAAWGTPE 235
Query: 244 QSQKIARFRVYLRIGKV 260
           +  ++  + + +R G++
Sbjct: 236 RPLRVT-WPIAIRAGRI 251

>pdb|4HTF|A Chain A, Crystal Structure Of S-Adenosylmethionine-Dependent Methyltransferase From Escherichia Coli In Complex With S-Adenosylmethionine Length = 285

Iteration: 1
 Score = 48.1 bits (113), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 41/168 (24%), Positives = 72/168 (42%), Gaps = 9/168 (5%)
Query: 21  KELFKLIASKTPKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKLPNIRYQ 80
           ++L +++A   P++    D G   GQ A   A+    VI  D S + +  A +    +  
Sbjct: 56  QDLDRVLAEXGPQKLRVLDAGGGEGQTAIKXAERGHQVILCDLSAQXIDRAKQAAEAKGV 115
Query: 81  LTPTMSITELEQNVAT--QSSVDLVTIASALHWFDLPQFYKQVKWVLKKPSGVIAAWTYT 138
                 I    Q+VA+  ++ VDL+   + L W   P+   Q  W + +P GV++   Y 
Sbjct: 116 SDNXQFIHCAAQDVASHLETPVDLILFHAVLEWVADPRSVLQTLWSVLRPGGVLSLXFYN 175
Query: 139 MPEINESVGAVFKPFDTIDCNPFWAPQRKLVDKKYMSIDFPFEPVDGY 186
              +      V   FD +       P++K   K+ +S D+P +P   Y
Sbjct: 176 AHGLLXH-NXVAGNFDYVQAG---XPKKK---KRTLSPDYPRDPTQVY 216

>pdb|4HTF|B Chain B, Crystal Structure Of S-Adenosylmethionine-Dependent Methyltransferase From Escherichia Coli In Complex With S-Adenosylmethionine Length = 285

Iteration: 1
 Score = 48.1 bits (113), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 41/168 (24%), Positives = 72/168 (42%), Gaps = 9/168 (5%)
Query: 21  KELFKLIASKTPKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKLPNIRYQ 80
           ++L +++A   P++    D G   GQ A   A+    VI  D S + +  A +    +  
Sbjct: 56  QDLDRVLAEXGPQKLRVLDAGGGEGQTAIKXAERGHQVILCDLSAQXIDRAKQAAEAKGV 115
Query: 81  LTPTMSITELEQNVAT--QSSVDLVTIASALHWFDLPQFYKQVKWVLKKPSGVIAAWTYT 138
                 I    Q+VA+  ++ VDL+   + L W   P+   Q  W + +P GV++   Y 
Sbjct: 116 SDNXQFIHCAAQDVASHLETPVDLILFHAVLEWVADPRSVLQTLWSVLRPGGVLSLXFYN 175
Query: 139 MPEINESVGAVFKPFDTIDCNPFWAPQRKLVDKKYMSIDFPFEPVDGY 186
              +      V   FD +       P++K   K+ +S D+P +P   Y
Sbjct: 176 AHGLLXH-NXVAGNFDYVQAG---XPKKK---KRTLSPDYPRDPTQVY 216

>pdb|3G5T|A Chain A, Crystal Structure Of Trans-Aconitate 3-Methyltransferase From Yeast Length = 299

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 52/119 (43%), Gaps = 12/119 (10%)
Query: 33  KRNLAWDVGTRSGQAAASLAQI---YQHVIATDTSPKQLKFA--IK------LPNIRYQL 81
           +R L  DVG   G A    AQ    ++ +I +D S   +K A  IK        N+ +++
Sbjct: 36  ERKLLVDVGCGPGTATLQXAQELKPFEQIIGSDLSATXIKTAEVIKEGSPDTYKNVSFKI 95
Query: 82  TPTMSITELEQNVATQSSVDLVTIASALHWFDLPQFYKQVKWVLKKPSGVIAAWTYTMP 140
           + +     L  +   +  +D +T     HWFD  +F +     L+K  G IA W Y  P
Sbjct: 96  SSSDDFKFLGADSVDKQKIDXITAVECAHWFDFEKFQRSAYANLRK-DGTIAIWGYADP 153

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	262
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	1e-54
3ege_A	261	Putative methyltransferase from antibiotic biosyn	2e-14
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	1e-12
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	4e-11
3i9f_A	170	Putative type 11 methyltransferase; structural gen	4e-11
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	9e-10
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	5e-09
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	5e-09
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	6e-09
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	7e-09
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	3e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-08
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	7e-08
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	1e-07
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	2e-07
1xxl_A	239	YCGJ protein; structural genomics, protein structu	3e-07
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	3e-07
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	4e-07
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	9e-07
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	1e-06
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	1e-06
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	1e-06
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	2e-06
3f4k_A	257	Putative methyltransferase; structural genomics, P	7e-06
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	8e-06
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	9e-06
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	1e-05
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	1e-05
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	1e-05
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	2e-05
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	4e-05
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	6e-05
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	1e-04
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	1e-04
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	1e-04
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	8e-04

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} Length = 299

 Score =  177 bits (449), Expect = 1e-54
 Identities = 56/289 (19%), Positives = 109/289 (37%), Gaps = 38/289 (13%)

Query: 8   QANLYAVARPNYPKELFKLIASKTP-KRNLAWDVGTRSGQAAASLAQ---IYQHVIATDT 63
            +  Y+ +RP+YP + +K+I      +R L  DVG   G A   +AQ    ++ +I +D 
Sbjct: 10  NSERYSSSRPSYPSDFYKMIDEYHDGERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDL 69

Query: 64  SPKQLKFAIKL--------PNIRYQLTPTMSITELEQNVATQSSVDLVTIASALHWFDLP 115
           S   +K A  +         N+ ++++ +     L  +   +  +D++T     HWFD  
Sbjct: 70  SATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKFLGADSVDKQKIDMITAVECAHWFDFE 129

Query: 116 QFYKQVKWVLKKPSGVIAAWTYTMPEI--NESVGAVFK--PFDTIDCNPFW-APQRKLVD 170
           +F +     L +  G IA W Y  P          +    P+      P+W  P R  + 
Sbjct: 130 KFQRSAYANL-RKDGTIAIWGYADPIFPDYPEFDDLMIEVPYGKQGLGPYWEQPGRSRLR 188

Query: 171 KKYMSIDFPFEP----------VDGYENTGPFDQ-----FVVEKMMDLDDYFKFIRSCSA 215
                     E            +   +     Q      ++ K + L ++  ++R+ SA
Sbjct: 189 NMLKDSHLDPELFHDIQVSYFCAEDVRDKVKLHQHTKKPLLIRKQVTLVEFADYVRTWSA 248

Query: 216 YQKAKDKGVELLTENVMEKF-----KAAWNEDGQSQKIARFRVYLRIGK 259
           Y + K        E+V + F     +        ++    +  + ++GK
Sbjct: 249 YHQWKQDPKNKDKEDVADWFIKESLRRRPELSTNTKIEVVWNTFYKLGK 297

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} Length = 261

 Score = 69.9 bits (171), Expect = 2e-14
 Identities = 23/155 (14%), Positives = 55/155 (35%), Gaps = 9/155 (5%)

Query: 2   AELFIKQANLYAVARPNYPKELFKLIASKTPKRN-LAWDVGTRSGQAAASLAQIYQHVIA 60
             ++      Y+  R    + +  +I      +  +  D+G  +G  + +LA     V A
Sbjct: 2   MSIYNSIGKQYSQTRVPDIRIVNAIINLLNLPKGSVIADIGAGTGGYSVALANQGLFVYA 61

Query: 61  TDTSPKQLKFAIKLPNIRYQLTPTMSITELEQNVATQSSVDLVTIASALHWF-DLPQFYK 119
            + S    + A+  P + +      ++  L        SVD V    A+H F  L + ++
Sbjct: 62  VEPSIVMRQQAVVHPQVEWFTGYAENLA-LPDK-----SVDGVISILAIHHFSHLEKSFQ 115

Query: 120 QVKWVLKKPSGVIAAWTYTMPEINESVGAVFKPFD 154
           +++ ++ +   ++             +   F    
Sbjct: 116 EMQRII-RDGTIVLLTFDIRLAQRIWLYDYFPFLW 149

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} Length = 279

 Score = 65.2 bits (159), Expect = 1e-12
 Identities = 31/163 (19%), Positives = 59/163 (36%), Gaps = 15/163 (9%)

Query: 9   ANLY---AVARPNYPKELFKLIASKTPKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSP 65
           A LY         Y ++L +L+  +  +  L  D+G  +GQ    +AQ    V+ TD + 
Sbjct: 32  ATLYQDKHSFVWQYGEDLLQLLNPQPGEFIL--DLGCGTGQLTEKIAQSGAEVLGTDNAA 89

Query: 66  KQLKFAIK-LPNIRYQLTPTMSITELEQNVATQSSVDLVTIASALHWF-DLPQFYKQVKW 123
             ++ A +  P++ + +                  +D V   + LHW  +       +  
Sbjct: 90  TMIEKARQNYPHLHFDV---ADARNFR----VDKPLDAVFSNAMLHWVKEPEAAIASIHQ 142

Query: 124 VLKKPSGVIAAWTYTMPEINESVGAVFKPFDTIDCNPFWAPQR 166
            L K  G   A       I   + A++   +T+  +   A   
Sbjct: 143 AL-KSGGRFVAEFGGKGNIKYILEALYNALETLGIHNPQALNP 184

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A Length = 263

 Score = 60.7 bits (147), Expect = 4e-11
 Identities = 27/153 (17%), Positives = 49/153 (32%), Gaps = 19/153 (12%)

Query: 1   MAELFIKQANLYAVARPNYPKELFKLIASKTPKRNLAW------DVGTRSGQAAASLAQI 54
           M+   ++ A  Y   R + P+   ++  +     +         ++G  +G+ A  L   
Sbjct: 1   MSSALLRAAYAYDRLRAHPPEVAGQIATAMASAVHPKGEEPVFLELGVGTGRIALPLIAR 60

Query: 55  YQHVIATDTSPKQLKFAIKLPNIRYQLTPTMSITELEQNVATQ-----SSVDLVTIASAL 109
               IA D     L+        R ++       ++ Q  A        SV  V +    
Sbjct: 61  GYRYIALDADAAMLEVF------RQKIAGVDRKVQVVQADARAIPLPDESVHGVIVVHLW 114

Query: 110 HWF-DLPQFYKQVKWVLKKPSGVIAAWTYTMPE 141
           H   D P+   +   VL KP G +         
Sbjct: 115 HLVPDWPKVLAEAIRVL-KPGGALLEGWDQAEA 146

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} Length = 170

 Score = 58.9 bits (143), Expect = 4e-11
 Identities = 24/116 (20%), Positives = 39/116 (33%), Gaps = 14/116 (12%)

Query: 20  PKELFKLIASKTPKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAI-KLPNIR 78
           P+E    I        +  D G  +G     L +    +   D +   LK    K  ++ 
Sbjct: 6   PEEYLPNIFEGKKGVIV--DYGCGNGFYCKYLLEFATKLYCIDINVIALKEVKEKFDSVI 63

Query: 79  YQLTPTMSITELEQNVATQSSVDLVTIASALHWF-DLPQFYKQVKWVLKKPSGVIA 133
                     E+  N     SVD +  A++ H   D      +VK +L K  G + 
Sbjct: 64  ----TLSDPKEIPDN-----SVDFILFANSFHDMDDKQHVISEVKRIL-KDDGRVI 109

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 227

 Score = 56.5 bits (136), Expect = 9e-10
 Identities = 36/196 (18%), Positives = 68/196 (34%), Gaps = 21/196 (10%)

Query: 21  KELFKLIASKTPKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKL-----P 75
           + L  L+     KR    D+    G  +  L      V+  D S   ++ A +       
Sbjct: 26  ETLEPLLMKYMKKRGKVLDLACGVGGFSFLLEDYGFEVVGVDISEDMIRKAREYAKSRES 85

Query: 76  NIRYQLTPTMSITELEQNVATQSSVDLVTIASALHWF---DLPQFYKQVKWVLKKPSGVI 132
           N+ + +     +   E       + D V    ++  F   +L Q +K+V+ VL KPSG  
Sbjct: 86  NVEFIVGDARKL-SFEDK-----TFDYVIFIDSIVHFEPLELNQVFKEVRRVL-KPSGKF 138

Query: 133 AAWTYTMPEINESVGAVFKPFDTIDCNPFWAPQRKLVDKKYMSIDFPFEPVDGYENTGPF 192
             +   + E+   +            +     Q    +++ + I+F  E          +
Sbjct: 139 IMYFTDLRELLPRLKESLVVGQKYWISKVIPDQ----EERTVVIEFKSEQDSFRVRFNVW 194

Query: 193 DQFVVEKMMDLDDYFK 208
            +  VE +  L  YF 
Sbjct: 195 GKTGVELLAKL--YFT 208

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} Length = 253

 Score = 54.5 bits (131), Expect = 5e-09
 Identities = 41/203 (20%), Positives = 69/203 (33%), Gaps = 40/203 (19%)

Query: 22  ELFKLIASKTPKRNLAWDVGTRSGQAAASLAQIY-QHVIATDTSPKQLKFAIKL---PNI 77
           EL K++     K  L  D+G   G      A+   + V+  D S + L  A +    P +
Sbjct: 35  ELKKMLPDFNQKTVL--DLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEAKRKTTSPVV 92

Query: 78  RYQLTPTMSITELEQNVATQSSVDLVTIASALHWF-DLPQFYKQVKWVLKKPSGVIAAWT 136
            Y+     +I ++        + ++V  + ALH+        K+V   L K SG      
Sbjct: 93  CYEQ---KAIEDIA---IEPDAYNVVLSSLALHYIASFDDICKKVYINL-KSSGSF---- 141

Query: 137 YTMPEINESVGAVFKPFDTIDCNPFWAPQRKLVDKKYMSIDFPFEPVDGYENTGPFDQFV 196
                    + +V  P  T D    W          +        PVD Y N        
Sbjct: 142 ---------IFSVEHPVFTADGRQDWYTDETGNKLHW--------PVDRYFNESMRTSHF 184

Query: 197 VEKMMDLDDYFKFIRSCSAYQKA 219
           +      +D  K+ R+ + Y + 
Sbjct: 185 LG-----EDVQKYHRTVTTYIQT 202

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} Length = 227

 Score = 54.0 bits (130), Expect = 5e-09
 Identities = 24/140 (17%), Positives = 44/140 (31%), Gaps = 15/140 (10%)

Query: 1   MAELFIKQA--NLYAVARPNYPKELFKLIASKTPKRNLAWDVGTRSGQAAASLAQIYQHV 58
            A+ +I           R    + +   I  + P+R L  D+G   G    +LA      
Sbjct: 20  NAQAWIDAVRHGAIESRRQVTDQAILLAILGRQPERVL--DLGCGEGWLLRALADRGIEA 77

Query: 59  IATDTSPKQLKFAIKLPNIRYQLTPTMSITELEQNVATQ----SSVDLVTIASALHWFDL 114
           +  D     +  A      R      + +    Q    +       DL+    AL   D+
Sbjct: 78  VGVDGDRTLVDAA------RAAGAGEVHLASYAQLAEAKVPVGKDYDLICANFALLHQDI 131

Query: 115 PQFYKQVKWVLKKPSGVIAA 134
            +    ++ +L  P G +  
Sbjct: 132 IELLSAMRTLL-VPGGALVI 150

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* Length = 218

 Score = 53.8 bits (129), Expect = 6e-09
 Identities = 31/179 (17%), Positives = 56/179 (31%), Gaps = 23/179 (12%)

Query: 15  ARPNYPKELFKLIASKTPKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIK- 73
                P  L +L A       L  ++ + +G     L+ +   V A D S + +  A + 
Sbjct: 30  MDSAAPAALERLRAGNIRGDVL--ELASGTGYWTRHLSGLADRVTALDGSAEMIAEAGRH 87

Query: 74  -LPNIRYQLTPTMSITELEQNVATQSSVDLVTIASALHWF---DLPQFYKQVKWVLKKPS 129
            L N+ ++      + +   +       D V  A  L          F++ V+  +  P 
Sbjct: 88  GLDNVEFRQ---QDLFDWTPD----RQWDAVFFAHWLAHVPDDRFEAFWESVRSAV-APG 139

Query: 130 GVIAAWTYTMPEINESVGAVFKPFDTIDCNPFWAPQRKLVDKKYMSIDFPFEPVDGYEN 188
           GV+           +      +     D  P  A +R L D +   I   F        
Sbjct: 140 GVVE--------FVDVTDHERRLEQQDDSEPEVAVRRTLQDGRSFRIVKVFRSPAELTE 190

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.70A {Bacillus thuringiensis} Length = 242

 Score = 53.7 bits (129), Expect = 7e-09
 Identities = 25/191 (13%), Positives = 59/191 (30%), Gaps = 32/191 (16%)

Query: 39  DVGTRSGQAAASLAQIYQHVIATDTSPKQLKFA---IKLPNIRYQLTPTMSITEL--EQN 93
           DVG   G     L++     +  D S   ++      + P++ +       ++ L  E  
Sbjct: 59  DVGCGDGYGTYKLSRTGYKAVGVDISEVMIQKGKERGEGPDLSFIK---GDLSSLPFENE 115

Query: 94  VATQSSVDLVTIASALHWF-DLPQFYKQVKWVLKKPSGVIAAWTYTMPEINESVGAVFKP 152
                  + +   ++L W  +  +   ++K VL K  G         P       +  + 
Sbjct: 116 -----QFEAIMAINSLEWTEEPLRALNEIKRVL-KSDGYACIAILG-PTAKPRENSYPRL 168

Query: 153 FDTIDCNPFWAPQR----------KLVDKKYMSIDFPFE------PVDGYENTGPFDQFV 196
           +          P            K+VD   +      E        D  ++      F+
Sbjct: 169 YGKDVVCNTMMPWEFEQLVKEQGFKVVDGIGVYKRGVNEKMLGQLSTDLQQSLTFLWVFM 228

Query: 197 VEKMMDLDDYF 207
           +++  ++ ++ 
Sbjct: 229 LKRHKEMKEFL 239

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} Length = 245

 Score = 52.0 bits (124), Expect = 3e-08
 Identities = 18/101 (17%), Positives = 37/101 (36%), Gaps = 8/101 (7%)

Query: 39  DVGTRSGQAAASLAQIYQHVIATDTSPKQLKFA---IKLPNIRYQLTPTMSITELEQNVA 95
           D    +G     L+Q +  VI  D S   L+ A       NI Y+L   +   +  Q  +
Sbjct: 62  DFACGNGTQTKFLSQFFPRVIGLDVSKSALEIAAKENTAANISYRLLDGLVPEQAAQIHS 121

Query: 96  TQSSVDLVTIASALHWFDLPQ---FYKQVKWVLKKPSGVIA 133
                + + + +  H   + +     + ++ +L    G + 
Sbjct: 122 EIGDAN-IYMRTGFHHIPVEKRELLGQSLRILL-GKQGAMY 160

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 52.2 bits (124), Expect = 7e-08
 Identities = 55/368 (14%), Positives = 92/368 (25%), Gaps = 146/368 (39%)

Query: 3   ELFIKQANLYAVARPNYP-----------------KELFKLIASKTPKRNL-----AWD- 39
            +      L     PN+                   EL +L+ SK  +  L       + 
Sbjct: 197 TVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNA 256

Query: 40  -------------VGTRSGQAAASL-AQIYQHVIATDTS----PKQLK--FAIKLPNIRY 79
                        + TR  Q    L A    H+     S    P ++K      L     
Sbjct: 257 KAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL----- 311

Query: 80  QLTPTMSITELEQNVATQSSVDLVTIASALH-WFDLPQFYKQVK-WVLKK---------- 127
                    +L + V T +   L  IA ++         +K V    L            
Sbjct: 312 ----DCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLE 367

Query: 128 --------------------PSGVIAA-WTYTMPEINESVGAVFKPFDTIDCNPF----- 161
                               P+ +++  W   +      V      +  ++  P      
Sbjct: 368 PAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTIS 427

Query: 162 ---------------WAPQRKLVD-----KKYMSIDFPFEPVDGY------------ENT 189
                          +A  R +VD     K + S D     +D Y            E+ 
Sbjct: 428 IPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHP 487

Query: 190 GPFDQFVVEKMMDLDDYFKFIRSCSAYQKAKDKGVELLTENVMEKFKAAWNEDGQSQK-I 248
                F   +M+ LD  F+F+      QK +                 AWN  G     +
Sbjct: 488 ERMTLF---RMVFLD--FRFLE-----QKIRHDST-------------AWNASGSILNTL 524

Query: 249 ARFRVYLR 256
            + + Y  
Sbjct: 525 QQLKFYKP 532

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} Length = 243

 Score = 51.0 bits (122), Expect = 7e-08
 Identities = 35/191 (18%), Positives = 57/191 (29%), Gaps = 31/191 (16%)

Query: 22  ELFKLIASKTPKRNLAWDVGTRSGQAAASLAQIY-QHVIATDTSPKQLKFAIKL---PNI 77
            L  ++      R +  D+G   G       +    +V+  D S K L  A        I
Sbjct: 34  ALRAMLPEVGGLRIV--DLGCGFGWFCRWAHEHGASYVLGLDLSEKMLARARAAGPDTGI 91

Query: 78  RYQLTPTMSITELEQNVATQSSVDLVTIASALHWF-DLPQFYKQVKWVLKKPSGVIAAWT 136
            Y+      + +L      Q S DL   + ALH+  D+ + ++ V   L  P G      
Sbjct: 92  TYER---ADLDKLH---LPQDSFDLAYSSLALHYVEDVARLFRTVHQAL-SPGGHF---- 140

Query: 137 YTMPEINESVGAVFKPFDTIDCNPFWAPQRKLVDKKYMSIDFPFEPVDGYENTGPFDQFV 196
                    V +   P       P WA       ++   ID          +       V
Sbjct: 141 ---------VFSTEHPIYMAPARPGWA--IDAEGRRTWPIDRYLVEGPRKTDWLAKG--V 187

Query: 197 VEKMMDLDDYF 207
           V+    +    
Sbjct: 188 VKHHRTVGTTL 198

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} Length = 220

 Score = 50.2 bits (120), Expect = 1e-07
 Identities = 23/149 (15%), Positives = 43/149 (28%), Gaps = 25/149 (16%)

Query: 1   MAELFIKQANLYAVARPNYP----------KELFKLIASKTPKRNLAWDVGTRSGQAAAS 50
              LF + A+ Y                  +++ + + +K+    L  + G  +G     
Sbjct: 5   FNGLFDEWAHTYDSFVQGEDIQYKEVFAHYEDILEDVVNKSFGNVL--EFGVGTGNLTNK 62

Query: 51  LAQIYQHVIATDTSPKQLKFA-IKLP-NIRYQLTPTMSITELEQNVATQSSVDLVTIASA 108
           L    + V   + S +    A  KLP                E      +S+D +    A
Sbjct: 63  LLLAGRTVYGIEPSREMRMIAKEKLPKEFSITE---GDFLSFEVP----TSIDTIVSTYA 115

Query: 109 LHWF---DLPQFYKQVKWVLKKPSGVIAA 134
            H     +      +   +L    G I  
Sbjct: 116 FHHLTDDEKNVAIAKYSQLL-NKGGKIVF 143

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 Length = 260

 Score = 49.8 bits (119), Expect = 2e-07
 Identities = 29/142 (20%), Positives = 49/142 (34%), Gaps = 20/142 (14%)

Query: 3   ELFIKQANLYAV----ARPNYPKELFKLIASKTPKRNLAWDVGTRSGQAAASLAQIYQHV 58
           ++     ++Y      A+ +   +L ++ A K  +  L  DV T  G  A + A   + V
Sbjct: 5   KIHHHHHHMYVTSQIHAKGSDLAKLMQIAALKGNEEVL--DVATGGGHVANAFAPFVKKV 62

Query: 59  IATDTSPKQLKFA------IKLPNIRYQLTPTMSITELEQNVATQSSVDLVTIASALHWF 112
           +A D +   LK A           + Y       +              +VT   A H F
Sbjct: 63  VAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQM-PFTDE-----RFHIVTCRIAAHHF 116

Query: 113 -DLPQFYKQVKWVLKKPSGVIA 133
            +   F  +   VL K  G + 
Sbjct: 117 PNPASFVSEAYRVL-KKGGQLL 137

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* Length = 239

 Score = 49.0 bits (117), Expect = 3e-07
 Identities = 24/102 (23%), Positives = 43/102 (42%), Gaps = 14/102 (13%)

Query: 39  DVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIK------LPNIRYQLTPTMSITELEQ 92
           D+G  +G  A + +   Q  I  D + + ++ A        + N+R+Q     S+     
Sbjct: 27  DIGAGAGHTALAFSPYVQECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESL-PFPD 85

Query: 93  NVATQSSVDLVTIASALHWF-DLPQFYKQVKWVLKKPSGVIA 133
           +     S D++T   A H F D+ +  ++V  VL K  G   
Sbjct: 86  D-----SFDIITCRYAAHHFSDVRKAVREVARVL-KQDGRFL 121

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} Length = 259

 Score = 49.1 bits (117), Expect = 3e-07
 Identities = 22/126 (17%), Positives = 40/126 (31%), Gaps = 14/126 (11%)

Query: 12  YAVARPNYPKELFKLIASKTPKRNLAWDVGTRSGQAAASLAQIYQ--HVIATDTSPKQLK 69
           +   R    ++L   +  +        D+G   G +   L   Y    +   D+    L+
Sbjct: 14  FEDERTRPARDLLAQVPLERVLNGY--DLGCGPGNSTELLTDRYGVNVITGIDSDDDMLE 71

Query: 70  FAIK-LPNIRYQLTPTMSITELEQNVATQSSVDLVTIASALHWF-DLPQFYKQVKWVLKK 127
            A   LPN  +       +   +         DL+   +   W  D      Q+   L +
Sbjct: 72  KAADRLPNTNFGK---ADLATWK----PAQKADLLYANAVFQWVPDHLAVLSQLMDQL-E 123

Query: 128 PSGVIA 133
             GV+A
Sbjct: 124 SGGVLA 129

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Length = 276

 Score = 48.7 bits (116), Expect = 4e-07
 Identities = 34/238 (14%), Positives = 74/238 (31%), Gaps = 26/238 (10%)

Query: 39  DVGTRSGQAAASLAQIYQ--HVIATDTSPKQLKFAIK------LPNIRYQLTPTMSITEL 90
           + G   G     LA+      + + D SP+ L+ A +      + N+++      +I  L
Sbjct: 43  EAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKNVKFLQ---ANIFSL 99

Query: 91  --EQNVATQSSVDLVTIASALHWF-DLPQFYKQVKWVLKKPSGVIAA--WTYTMPEINES 145
             E +     S D + +   L       +  K +K VL KP G I      +     +  
Sbjct: 100 PFEDS-----SFDHIFVCFVLEHLQSPEEALKSLKKVL-KPGGTITVIEGDHGSCYFHPE 153

Query: 146 VGAVFKPFDTIDCNPFWAPQRKLVDKKYMSI--DFPFEPVDGYENTGPFDQFVVEKMMDL 203
                + ++ +     +     LV ++   +  +  FE +         D    E +   
Sbjct: 154 GKKAIEAWNCLIRVQAYMKGNSLVGRQIYPLLQESGFEKIRVEPRMVYIDSSKPELVDGF 213

Query: 204 DDYFKFIRSCSAYQKAKDKGVELLTENVMEKFKAAWNEDGQSQKIARFRVYLRIGKVG 261
                        +++      ++ E   EK     ++  +      +  +   G   
Sbjct: 214 ILKTIIPMVEGVKEQSLKMQ--IIKEEEWEKGIEELHKTAEHGGTFCYTFFKGWGTKE 269

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 Length = 219

 Score = 47.5 bits (113), Expect = 9e-07
 Identities = 25/138 (18%), Positives = 50/138 (36%), Gaps = 19/138 (13%)

Query: 1   MAELFIKQANLY----AVARPNYPKELFKLIASKTPKRNLAWDVGTRSGQAAASLAQIYQ 56
           M  +F +  N Y     V R  Y  EL + +    P+     ++G  +G+ A  L     
Sbjct: 13  MWHIFERFVNEYERWFLVHRFAYLSEL-QAVKCLLPEGRG-VEIGVGTGRFAVPLKI--- 67

Query: 57  HVIATDTSPKQLKFAIKLPNIRYQLTPTMSITELEQNVATQSSVDLVTIASALHWF-DLP 115
             I  + S +  + A +   +        ++  L+       S D   + + + +  D  
Sbjct: 68  -KIGVEPSERMAEIA-RKRGVFVLKGTAENL-PLKDE-----SFDFALMVTTICFVDDPE 119

Query: 116 QFYKQVKWVLKKPSGVIA 133
           +  K+   +L K  G + 
Sbjct: 120 RALKEAYRIL-KKGGYLI 136

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* Length = 216

 Score = 47.5 bits (113), Expect = 1e-06
 Identities = 19/103 (18%), Positives = 41/103 (39%), Gaps = 14/103 (13%)

Query: 37  AWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFA----IKLPNIRYQLTPTMSITELEQ 92
             ++G  +G     LA   + +   D  P+ +  A     +  +I +        T++ Q
Sbjct: 55  GLEIGCAAGAFTEKLAPHCKRLTVIDVMPRAIGRACQRTKRWSHISWAA------TDILQ 108

Query: 93  NVATQSSVDLVTIASALHWF-DLPQFYKQVKWVLK--KPSGVI 132
               +   DL+ +A  L++  D+ Q    +  ++K   P G +
Sbjct: 109 FSTAE-LFDLIVVAEVLYYLEDMTQMRTAIDNMVKMLAPGGHL 150

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A Length = 383

 Score = 48.2 bits (114), Expect = 1e-06
 Identities = 36/230 (15%), Positives = 66/230 (28%), Gaps = 61/230 (26%)

Query: 39  DVGTRSGQAAASLAQIYQ---HVIATDTSPKQLKFAIK--------------LPNIRYQL 81
           D+G  +G+     +++      VI  D    QL+ A K                N+R+  
Sbjct: 89  DLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLK 148

Query: 82  TPTMSITELEQNVATQSSVDLVTIASALHWF-DLPQFYKQVKWVLKKPSGVIA-----AW 135
               ++   E      SSVD+V      +   +    +K++  VL +  G +      A 
Sbjct: 149 GFIENLATAEPEGVPDSSVDIVISNCVCNLSTNKLALFKEIHRVL-RDGGELYFSDVYAD 207

Query: 136 TYTMPEINESVGAV---------------------FKPFDTIDCNPF----WAPQRKLVD 170
                   +                          F+    +   P        ++ + D
Sbjct: 208 RRLSEAAQQDPILYGECLGGALYLEDFRRLVAEAGFRDVRLVSVGPVDVSDPQLRKLVPD 267

Query: 171 KKYMSIDF----PFEPVDGYENTGPFDQFVV-----EKMMDLDDYFKFIR 211
            ++ S  F            E+ G   Q         +   LD +F F R
Sbjct: 268 VQFYSCTFRCFKVATLEATREDYG---QSATYLGGIGEEFKLDRFFTFPR 314

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} Length = 273

 Score = 47.5 bits (113), Expect = 1e-06
 Identities = 34/217 (15%), Positives = 68/217 (31%), Gaps = 45/217 (20%)

Query: 39  DVGTRSGQAAASLAQIYQ-HVIATDTSPKQLKFAIKL-------PNIRYQLTPTMSITEL 90
           DVG   G+ A  LA      V     S  Q+  A            + +         +L
Sbjct: 67  DVGCGIGKPAVRLATARDVRVTGISISRPQVNQANARATAAGLANRVTFSY---ADAMDL 123

Query: 91  EQNVATQSSVDLV-TIASALHWFDLPQFYKQVKWVLKKPSGVIAAWTYTMPEINESVGAV 149
                  +S D V  + S  H  D  +  +++  VL +P G +A   + +          
Sbjct: 124 P---FEDASFDAVWALESLHHMPDRGRALREMARVL-RPGGTVAIADFVLLA-------- 171

Query: 150 FKPFDTIDCNPFWAPQRKLVDKKYMSIDFP-FEPVDGY----ENTGPFDQFVVEKMMDLD 204
                     P    +++ VD             +D Y             VV   +D+ 
Sbjct: 172 ----------PVEGAKKEAVDAFRAGGGVLSLGGIDEYESDVRQAE----LVVTSTVDIS 217

Query: 205 DYFK--FIRSCSAYQKAKDKGVELLTENVMEKFKAAW 239
              +   +++  A++ A+ +    +    +++  A +
Sbjct: 218 AQARPSLVKTAEAFENARSQVEPFMGAEGLDRMIATF 254

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} Length = 215

 Score = 46.5 bits (110), Expect = 2e-06
 Identities = 25/138 (18%), Positives = 46/138 (33%), Gaps = 30/138 (21%)

Query: 2   AELFIKQANLYAVARPNYPKELFKLIAS---KTPKRNLAWDVGTRSGQAAASLAQIYQHV 58
            E F+     +      +P +    IA    + P   +  D G    + A+S+      V
Sbjct: 33  PEAFLLYHRGFQSQVKKWPLQPVDRIARDLRQRPASLVVADFGCGDCRLASSI---RNPV 89

Query: 59  IATDTSPKQLKF----AIKLPNIRYQLTPTMSITELEQNVATQSSVDLVTIASALHWFDL 114
              D +    +       ++P              LE       SVD+     +L   ++
Sbjct: 90  HCFDLASLDPRVTVCDMAQVP--------------LEDE-----SVDVAVFCLSLMGTNI 130

Query: 115 PQFYKQVKWVLKKPSGVI 132
             F ++   VL KP G++
Sbjct: 131 RDFLEEANRVL-KPGGLL 147

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* Length = 257

 Score = 45.2 bits (107), Expect = 7e-06
 Identities = 21/131 (16%), Positives = 42/131 (32%), Gaps = 18/131 (13%)

Query: 21  KELFKLIASKTPKRNLAWDVGTRSGQAAASLAQIYQ-HVIATDTSPKQLKFAIKL----- 74
           ++    I   T    +A D+G  +G     LA   +  +   D  P  ++   +      
Sbjct: 35  RKAVSFINELTDDAKIA-DIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKAN 93

Query: 75  --PNIRYQLTPTMSITELEQNVATQSSVDLVTIASALHWFDLPQFYKQVKWVLKKPSGVI 132
               ++       S+  L         +DL+    A++     +   +    L K  G I
Sbjct: 94  CADRVKGIT---GSMDNLP---FQNEELDLIWSEGAIYNIGFERGMNEWSKYL-KKGGFI 146

Query: 133 AA--WTYTMPE 141
           A    ++   E
Sbjct: 147 AVSEASWFTSE 157

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} Length = 219

 Score = 44.8 bits (106), Expect = 8e-06
 Identities = 22/115 (19%), Positives = 43/115 (37%), Gaps = 18/115 (15%)

Query: 28  ASKTPKRNLAWDVGTRSGQAAASLAQIYQ-HVIATDTSPKQLKFAIKL-------PNIRY 79
              T    +  D+G+  G  + +LA+     + A D S    + A+K          I+ 
Sbjct: 40  FGITAGTCI--DIGSGPGALSIALAKQSDFSIRALDFSKHMNEIALKNIADANLNDRIQI 97

Query: 80  QLTPTMSITELEQNVATQSSVDLVTIASAL-HWFDLPQFYKQVKWVLKKPSGVIA 133
                 +I  +E N       DL+    ++  W D+   ++++  +L K  G   
Sbjct: 98  VQGDVHNI-PIEDN-----YADLIVSRGSVFFWEDVATAFREIYRIL-KSGGKTY 145

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} Length = 275

 Score = 45.0 bits (106), Expect = 9e-06
 Identities = 19/112 (16%), Positives = 31/112 (27%), Gaps = 15/112 (13%)

Query: 39  DVGTRSGQAAASLAQIYQ---HVIATDTSPKQLKFAIKLPNIRYQLT--PTMSITELEQN 93
           ++G   G  +A LA       HV   D +       + L      L   P      +  N
Sbjct: 49  EIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFN 108

Query: 94  VATQS--------SVDLVTIASALHWFDLPQFYKQVKWVLKKPSG--VIAAW 135
                          D V +A +L +F        +   +        +A W
Sbjct: 109 TNLSDDLGPIADQHFDRVVLAHSLWYFASANALALLFKNMAAVCDHVDVAEW 160

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 Length = 297

 Score = 44.5 bits (105), Expect = 1e-05
 Identities = 32/216 (14%), Positives = 65/216 (30%), Gaps = 46/216 (21%)

Query: 39  DVGTRSGQAAASLAQIYQ-HVIATDTSPKQLKFAIKL-------PNIRYQLTPTMSITEL 90
           D+G   G AA  L + +   +   + +P Q K   +         NI  +     S  E+
Sbjct: 88  DLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKY---GSFLEI 144

Query: 91  EQNVATQSSVDLV-TIASALHWFDLPQFYKQVKWVLKKPSGVIAAWTYTMPEINESVGAV 149
                  +S D + +  + LH  D  + +++   VL KP GV+A       +        
Sbjct: 145 P---CEDNSYDFIWSQDAFLHSPDKLKVFQECARVL-KPRGVMAITDPMKED-------- 192

Query: 150 FKPFDTIDCNPFWAPQRKLVDKKYMSIDFPFEPVDGY----ENTGPFDQFVVEKMMDLDD 205
                        +  + ++D+  +        +  Y    +  G     V  +     D
Sbjct: 193 ---------GIDKSSIQPILDRIKLH---DMGSLGLYRSLAKECG----LVTLRTFSRPD 236

Query: 206 YFK--FIRSCSAYQKAKDKGVELLTENVMEKFKAAW 239
                + +  +   K   +     +       K   
Sbjct: 237 SLVHHYSKVKAELIKRSSEIASFCSPEFQANMKRGL 272

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 203

 Score = 44.0 bits (104), Expect = 1e-05
 Identities = 21/153 (13%), Positives = 51/153 (33%), Gaps = 14/153 (9%)

Query: 2   AELFIKQANLYAVARPNYPKELFKLIASKTPKRNLAWDVGTRSGQAAASLAQIYQHVIAT 61
                        A     + L +  A+      L  DVG+ +G+    LA +   +   
Sbjct: 13  TFDAEALLGTVISAED-PDRVLIEPWATGVDGVIL--DVGSGTGRWTGHLASLGHQIEGL 69

Query: 62  DTSPKQLKFA-IKLPNIRYQLTPTMSITELEQNVATQSSVDLVTIASALHWF---DLPQF 117
           + + + ++ A    P++ +      +IT+L     +      +    +L      +LP  
Sbjct: 70  EPATRLVELARQTHPSVTFHH---GTITDLS---DSPKRWAGLLAWYSLIHMGPGELPDA 123

Query: 118 YKQVKWVLKKPSGVIAAWTYTMPEINESVGAVF 150
              ++  + +  G +    ++ P +      V 
Sbjct: 124 LVALRMAV-EDGGGLLMSFFSGPSLEPMYHPVA 155

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* Length = 267

 Score = 44.1 bits (104), Expect = 1e-05
 Identities = 16/104 (15%), Positives = 32/104 (30%), Gaps = 15/104 (14%)

Query: 39  DVGTRSGQAAASLAQIYQ-HVIATDTSPKQLKFAIKL-------PNIRYQLTPTMSITEL 90
           D+G  +G     LA      V   D     +    +          +   +    S+ +L
Sbjct: 52  DIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIV---GSMDDL 108

Query: 91  EQNVATQSSVDLVTIASALHWFDLPQFYKQVKWVLKKPSGVIAA 134
                    +DL+    A++     +   + +  L K  G +A 
Sbjct: 109 PFRNE---ELDLIWSEGAIYNIGFERGLNEWRKYL-KKGGYLAV 148

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 195

 Score = 43.2 bits (102), Expect = 2e-05
 Identities = 24/137 (17%), Positives = 46/137 (33%), Gaps = 21/137 (15%)

Query: 39  DVGTRSGQAAASLAQIYQHVIATDTSPKQLKFA-IKLPNIRYQLTPTMSITELEQNVATQ 97
           D G   G+    L++    V+ TD  P  + +A    P  R+ +     ++  +    ++
Sbjct: 52  DAGCGQGRIGGYLSKQGHDVLGTDLDPILIDYAKQDFPEARWVV---GDLSVDQ---ISE 105

Query: 98  SSVDLVTIASALHWF----DLPQFYKQVKWVLKKPSG--VIAAWT---YTMPEINESVGA 148
           +  DL+  A  +  F            +   L    G  VI       +   +  E    
Sbjct: 106 TDFDLIVSAGNVMGFLAEDGREPALANIHRAL-GADGRAVIGFGAGRGWVFGDFLEVAER 164

Query: 149 ----VFKPFDTIDCNPF 161
               +   F++ D  PF
Sbjct: 165 VGLELENAFESWDLKPF 181

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} PDB: 2gh1_A Length = 284

 Score = 43.0 bits (101), Expect = 4e-05
 Identities = 16/105 (15%), Positives = 28/105 (26%), Gaps = 17/105 (16%)

Query: 39  DVGTRSGQAAASLAQIYQ---HVIATDTSPKQLKFAIKL-----PNIRYQLTPTMSITEL 90
           D G   G     L  +          D+    L  A +L      +  +        TE+
Sbjct: 28  DYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLE---GDATEI 84

Query: 91  EQNVATQSSVDLVTIASALHWF-DLPQFYKQVKWVLKKPSGVIAA 134
           E         D+    + L          +++   + K  G I  
Sbjct: 85  E----LNDKYDIAICHAFLLHMTTPETMLQKMIHSV-KKGGKIIC 124

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} Length = 234

 Score = 42.1 bits (99), Expect = 6e-05
 Identities = 24/112 (21%), Positives = 42/112 (37%), Gaps = 17/112 (15%)

Query: 39  DVGTRSGQAAASLAQIYQ--HVIATDTSPKQLKFAIK----LPNIRYQLTPTMSITELEQ 92
           D+G  +G  +A L + Y        D S K L+ A         ++Y        ++ + 
Sbjct: 50  DLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNLKVKYI---EADYSKYD- 105

Query: 93  NVATQSSVDLVTIASALHWF---DLPQFYKQVKWVLKKPSGVIAAWTYTMPE 141
               +   D+V  A ++H     D  + YK+   +L K SG+         E
Sbjct: 106 ---FEEKYDMVVSALSIHHLEDEDKKELYKRSYSIL-KESGIFINADLVHGE 153

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* Length = 199

 Score = 41.3 bits (97), Expect = 1e-04
 Identities = 22/139 (15%), Positives = 44/139 (31%), Gaps = 21/139 (15%)

Query: 12  YAVARPNYPKELFKLIASKTPKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFA 71
           Y + R     E+ + +    P + L  D+G  +G+ +  LA     V A D +   +   
Sbjct: 15  YELTRT--HSEVLEAVKVVKPGKTL--DLGCGNGRNSLYLAANGYDVDAWDKNAMSIANV 70

Query: 72  IK------LPNIRYQLTPTMSITELEQNVATQSSVDLVTIASALHWF---DLPQFYKQVK 122
            +      L N+  ++   + +  L          D +     L +     +P     ++
Sbjct: 71  ERIKSIENLDNLHTRV---VDLNNLT----FDRQYDFILSTVVLMFLEAKTIPGLIANMQ 123

Query: 123 WVLKKPSGVIAAWTYTMPE 141
               KP G           
Sbjct: 124 RCT-KPGGYNLIVAAMDTA 141

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} Length = 211

 Score = 41.0 bits (96), Expect = 1e-04
 Identities = 21/120 (17%), Positives = 42/120 (35%), Gaps = 12/120 (10%)

Query: 39  DVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKLPNIRYQLTPTMSITELEQNVATQS 98
           ++G  +G  A ++      V ATD SP+    A +      +      +  ++       
Sbjct: 49  ELGCGAGYQAEAMLAAGFDVDATDGSPELAAEASRRLGRPVRTMLFHQLDAID------- 101

Query: 99  SVDLVTIASALHWF---DLPQFYKQVKWVLKKPSGV-IAAWTYTMPEINESVGAVFKPFD 154
           + D V   + L      +L    K +   L KP G+  A++     E  + +   +    
Sbjct: 102 AYDAVWAHACLLHVPRDELADVLKLIWRAL-KPGGLFYASYKSGEGEGRDKLARYYNYPS 160

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} Length = 219

 Score = 40.8 bits (96), Expect = 1e-04
 Identities = 25/105 (23%), Positives = 44/105 (41%), Gaps = 17/105 (16%)

Query: 39  DVGTRSGQAAASLAQIYQ---HVIATDTSPKQLKFAIK------LPNIRYQLTPTMSITE 89
           DVGT +G     L+++      V A D   + + +A +      L N+    +    I  
Sbjct: 43  DVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKI-P 101

Query: 90  LEQNVATQSSVDLVTIASALHWF-DLPQFYKQVKWVLKKPSGVIA 133
           L  N     +VD + +A   H   +  +F +++K V  KP   +A
Sbjct: 102 LPDN-----TVDFIFMAFTFHELSEPLKFLEELKRVA-KPFAYLA 140

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A Length = 217

 Score = 38.7 bits (90), Expect = 8e-04
 Identities = 17/117 (14%), Positives = 34/117 (29%), Gaps = 13/117 (11%)

Query: 26  LIASKTPKRNLAWDVGTRSGQAAASLAQI--YQHVIATDTSPKQLKFAIK-----LPNIR 78
            +     +R +  D+G   G     L +   ++ +   D S + L+ A +          
Sbjct: 24  ALKQSNARRVI--DLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRN 81

Query: 79  YQLTPTMSITELEQNVATQSSVDLVTIASALHWF---DLPQFYKQVKWVLKKPSGVI 132
                 +    L          D  T+   +       L  F + +     +P  VI
Sbjct: 82  QWERLQLIQGALTYQDKRFHGYDAATVIEVIEHLDLSRLGAFERVLFEFA-QPKIVI 137

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	262
4hg2_A	257	Methyltransferase type 11; structural genomics, PS	100.0
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	100.0
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	99.96
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	99.91
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	99.89
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	99.89
1xxl_A	239	YCGJ protein; structural genomics, protein structu	99.87
3ege_A	261	Putative methyltransferase from antibiotic biosyn	99.83
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	99.81
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	99.81
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	99.79
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	99.79
4htf_A	285	S-adenosylmethionine-dependent methyltransferase;	99.79
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	99.79
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	99.78
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	99.77
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	99.77
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	99.76
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	99.76
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	99.76
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	99.76
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	99.76
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	99.75
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	99.75
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	99.75
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	99.75
3f4k_A	257	Putative methyltransferase; structural genomics, P	99.75
2p7i_A	250	Hypothetical protein; putative methyltransferase,	99.74
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	99.74
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	99.74
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	99.74
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	99.74
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	99.74
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	99.74
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	99.73
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	99.73
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	99.72
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	99.72
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	99.72
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	99.72
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	99.72
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	99.72
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	99.72
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	99.72
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	99.71
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	99.71
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	99.71
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	99.71
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	99.7
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	99.7
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	99.69
3i9f_A	170	Putative type 11 methyltransferase; structural gen	99.69
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	99.69
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	99.69
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	99.69
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	99.69
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	99.68
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	99.68
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	99.68
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	99.68
3cc8_A	230	Putative methyltransferase; structural genomics, j	99.68
3lcc_A	235	Putative methyl chloride transferase; halide methy	99.68
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	99.68
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	99.67
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	99.67
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	99.67
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	99.67
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	99.66
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	99.66
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	99.66
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	99.65
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	99.65
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	99.65
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	99.64
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	99.64
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	99.64
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	99.64
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	99.64
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	99.64
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	99.64
2g72_A	289	Phenylethanolamine N-methyltransferase; HET: SAM F	99.64
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	99.63
3fzg_A	200	16S rRNA methylase; methyltransferase, plasmid, tr	99.63
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	99.63
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	99.63
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	99.62
3ocj_A	305	Putative exported protein; structural genomics, PS	99.61
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	99.61
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	99.61
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	99.6
2a14_A	263	Indolethylamine N-methyltransferase; SGC,INMT, str	99.6
2qe6_A	274	Uncharacterized protein TFU_2867; putative methylt	99.6
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	99.6
3sso_A	419	Methyltransferase; macrolide, natural product, ros	99.59
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	99.59
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	99.59
1xdz_A	240	Methyltransferase GIDB; MCSG, protein structure in	99.59
1ws6_A	171	Methyltransferase; structural genomics, riken stru	99.58
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	99.58
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	99.58
3hp7_A	291	Hemolysin, putative; structural genomics, APC64019	99.58
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	99.58
2i62_A	265	Nicotinamide N-methyltransferase; structural genom	99.58
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	99.57
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.57
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	99.57
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	99.57
1af7_A	274	Chemotaxis receptor methyltransferase CHER; chemot	99.57
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	99.57
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	99.56
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	99.56
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	99.56
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	99.55
2esr_A	177	Methyltransferase; structural genomics, hypothetic	99.55
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	99.55
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	99.55
2plw_A	201	Ribosomal RNA methyltransferase, putative; malaria	99.54
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	99.54
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	99.54
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	99.53
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	99.53
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	99.52
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	99.52
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	99.52
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	99.51
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	99.51
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	99.51
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	99.51
3lpm_A	259	Putative methyltransferase; structural genomics, p	99.51
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	99.5
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	99.5
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	99.49
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	99.49
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	99.49
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	99.49
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	99.49
2frn_A	278	Hypothetical protein PH0793; structural genomics,	99.49
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	99.49
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	99.48
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	99.48
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	99.48
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	99.48
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	99.48
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	99.48
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	99.48
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	99.48
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	99.47
1o9g_A	250	RRNA methyltransferase; antibiotic resistance, Se-	99.47
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	99.47
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	99.47
2wa2_A	276	Non-structural protein 5; transferase, S-adenosyl-	99.47
2b3t_A	276	Protein methyltransferase HEMK; translation termin	99.47
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	99.47
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	99.47
3opn_A	232	Putative hemolysin; structural genomics, PSI-2, pr	99.47
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	99.46
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	99.46
2bm8_A	236	Cephalosporin hydroxylase CMCI; cephamycin biosynt	99.46
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	99.46
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	99.46
2oxt_A	265	Nucleoside-2'-O-methyltransferase; flavivirus, vir	99.46
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.45
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	99.45
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	99.45
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	99.45
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	99.45
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	99.44
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	99.44
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	99.44
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	99.44
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	99.44
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	99.44
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	99.43
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	99.43
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	99.43
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	99.43
1jsx_A	207	Glucose-inhibited division protein B; methyltransf	99.43
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	99.42
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	99.42
3giw_A	277	Protein of unknown function DUF574; rossmann-fold	99.42
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	99.42
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	99.42
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	99.42
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	99.41
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	99.41
2pt6_A	321	Spermidine synthase; transferase, structural genom	99.41
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	99.41
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	99.41
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	99.41
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	99.4
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	99.4
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	99.4
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	99.4
2b25_A	336	Hypothetical protein; structural genomics, methyl	99.39
2ld4_A	176	Anamorsin; methyltransferase-like fold, alpha/beta	99.39
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	99.39
2i7c_A	283	Spermidine synthase; transferase, structural genom	99.38
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	99.38
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	99.38
2o07_A	304	Spermidine synthase; structural genomics, structur	99.38
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	99.37
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	99.37
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	99.37
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	99.37
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	99.36
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	99.36
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	99.36
2p41_A	305	Type II methyltransferase; vizier, viral enzymes i	99.36
4hc4_A	376	Protein arginine N-methyltransferase 6; HRMT1L6, S	99.36
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	99.36
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	99.35
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	99.35
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	99.34
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	99.34
1zq9_A	285	Probable dimethyladenosine transferase; SGC, struc	99.34
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	99.33
2h00_A	254	Methyltransferase 10 domain containing protein; st	99.33
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	99.33
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	99.32
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	99.32
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	99.31
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	99.3
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	99.29
2qm3_A	373	Predicted methyltransferase; putative methyltransf	99.27
3lcv_B	281	Sisomicin-gentamicin resistance methylase SGM; ant	99.26
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	99.26
3frh_A	253	16S rRNA methylase; methyltransferase domain, heli	99.25
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	99.24
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	99.24
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	99.23
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	99.22
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	99.22
2h1r_A	299	Dimethyladenosine transferase, putative; SGC toron	99.22
3k6r_A	278	Putative transferase PH0793; structural genomics,	99.21
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	99.21
1yub_A	245	Ermam, rRNA methyltransferase; MLS antibiotics; NM	99.2
1qam_A	244	ERMC' methyltransferase; rRNA methyltransferase ER	99.2
4a6d_A	353	Hydroxyindole O-methyltransferase; melatonin, circ	99.2
3gru_A	295	Dimethyladenosine transferase; rossman fold, ribos	99.19
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	99.18
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	99.18
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	99.16
2ih2_A	421	Modification methylase TAQI; DNA, DNA methyltransf	99.15
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	99.14
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	99.13
2jjq_A	425	Uncharacterized RNA methyltransferase pyrab10780;	99.13
2xyq_A	290	Putative 2'-O-methyl transferase; transferase-vira	99.12
1uwv_A	433	23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m	99.1
2f8l_A	344	Hypothetical protein LMO1582; structural genomics,	99.1
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	99.08
3bt7_A	369	TRNA (uracil-5-)-methyltransferase; methyluridine,	99.05
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	99.05
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	99.04
3tqs_A	255	Ribosomal RNA small subunit methyltransferase A; p	99.01
2qfm_A	364	Spermine synthase; spermidine aminopropyltransfera	99.0
3fut_A	271	Dimethyladenosine transferase; methyltransferase,	99.0
2okc_A	445	Type I restriction enzyme stysji M protein; NP_813	98.96
3evf_A	277	RNA-directed RNA polymerase NS5; NS5 methyltransfe	98.92
3k0b_A	393	Predicted N6-adenine-specific DNA methylase; methy	98.91
3ldu_A	385	Putative methylase; structural genomics, PSI-2, pr	98.9
2r6z_A	258	UPF0341 protein in RSP 3' region; alpha-beta prote	98.89
1m6e_X	359	S-adenosyl-L-methionnine:salicylic acid carboxyl m	98.87
3o4f_A	294	Spermidine synthase; aminopropyltransferase, polya	98.87
2efj_A	384	3,7-dimethylxanthine methyltransferase; SAM-depend	98.86
3ldg_A	384	Putative uncharacterized protein SMU.472; YPSC, me	98.86
3ua3_A	745	Protein arginine N-methyltransferase 5; TIM-barrel	98.85
1qyr_A	252	KSGA, high level kasugamycin resistance protein, S	98.83
3uzu_A	279	Ribosomal RNA small subunit methyltransferase A; s	98.83
3ftd_A	249	Dimethyladenosine transferase; KSGA, rossmann-like	98.81
2ar0_A	541	M.ecoki, type I restriction enzyme ecoki M protein	98.78
2oyr_A	258	UPF0341 protein YHIQ; alpha-beta protein, structur	98.74
1m6y_A	301	S-adenosyl-methyltransferase MRAW; SAM-dependent m	98.71
4gqb_A	637	Protein arginine N-methyltransferase 5; TIM barrel	98.7
4auk_A	375	Ribosomal RNA large subunit methyltransferase M; Y	98.69
3b5i_A	374	S-adenosyl-L-methionine:salicylic acid carboxyl me	98.69
3axs_A	392	Probable N(2),N(2)-dimethylguanosine tRNA methylt	98.68
2dul_A	378	N(2),N(2)-dimethylguanosine tRNA methyltransferas;	98.66
3cvo_A	202	Methyltransferase-like protein of unknown functio;	98.66
3gcz_A	282	Polyprotein; flavivirus, RNA capping, methyltransf	98.65
3khk_A	544	Type I restriction-modification system methylation	98.58
3ll7_A	410	Putative methyltransferase; methytransferase, stru	98.57
2k4m_A	153	TR8_protein, UPF0146 protein MTH_1000; alpha+beta,	98.54
2b9e_A	309	NOL1/NOP2/SUN domain family, member 5 isoform 2; m	98.53
3s1s_A	878	Restriction endonuclease bpusi; PD--(D/E)XK cataly	98.5
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	98.48
3lkd_A	542	Type I restriction-modification system methyltrans	98.44
3eld_A	300	Methyltransferase; flavivirus, RNA capping, guanyl	98.4
1wg8_A	285	Predicted S-adenosylmethionine-dependent methyltra	98.26
2qy6_A	257	UPF0209 protein YFCK; structural genomics, unknown	98.23
2zig_A	297	TTHA0409, putative modification methylase; methylt	98.19
3c6k_A	381	Spermine synthase; spermidine aminopropyltransfera	98.13
2px2_A	269	Genome polyprotein [contains: capsid protein C (co	98.13
3lkz_A	321	Non-structural protein 5; flavivirus, methyltransf	97.82
2wk1_A	282	NOVP; transferase, O-methyltransferase, novobiocin	97.72
3ufb_A	530	Type I restriction-modification system methyltran	97.72
4fzv_A	359	Putative methyltransferase NSUN4; mterf fold, meth	97.7
2oo3_A	283	Protein involved in catabolism of external DNA; st	97.63
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	97.63
3p8z_A	267	Mtase, non-structural protein 5; methyltransferase	97.62
3r24_A	344	NSP16, 2'-O-methyl transferase; methyltransferase,	97.58
3tka_A	347	Ribosomal RNA small subunit methyltransferase H; H	97.53
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	97.39
1i4w_A	353	Mitochondrial replication protein MTF1; mitochondr	97.38
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	97.29
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	97.23
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	97.15
3g7u_A	376	Cytosine-specific methyltransferase; DNA-binding,	97.14
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	97.07
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	96.96
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	96.8
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	96.77
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	96.75
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	96.66
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	96.65
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	96.65
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	96.61
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	96.6
3gms_A	340	Putative NADPH:quinone reductase; structural genom	96.58
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	96.57
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	96.56
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	96.54
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	96.49
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	96.48
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	96.47
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	96.46
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	96.46
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	96.44
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	96.44
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	96.41
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	96.39
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	96.31
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	96.25
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	96.25
1eg2_A	319	Modification methylase RSRI; rossmann fold, exocyc	96.25
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	96.23
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	96.19
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	96.17
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	96.14
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	96.13
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	96.13
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	96.11
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	96.1
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	96.09
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	95.99
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	95.97
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	95.95
4eye_A	342	Probable oxidoreductase; structural genomics, niai	95.91
1g55_A	343	DNA cytosine methyltransferase DNMT2; human DNA me	95.85
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	95.8
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	95.8
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	95.73
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	95.72
4eez_A	348	Alcohol dehydrogenase 1; site-saturation mutagenes	95.72
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	95.71
1rjd_A	334	PPM1P, carboxy methyl transferase for protein phos	95.7
2zb4_A	357	Prostaglandin reductase 2; rossmann fold, alternat	95.53
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	95.38
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	95.34
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	95.26
3krt_A	456	Crotonyl COA reductase; structural genomics, prote	95.23
3nx4_A	324	Putative oxidoreductase; csgid, structural genomic	95.17
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	95.17
2qrv_A	295	DNA (cytosine-5)-methyltransferase 3A; DNA methylt	95.14
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	95.11
3qv2_A	327	5-cytosine DNA methyltransferase; DNMT2, ehmeth; H	94.95
3tos_A	257	CALS11; methyltransferase, calicheamicin, structur	94.91
1xa0_A	328	Putative NADPH dependent oxidoreductases; structur	94.81
2c7p_A	327	Modification methylase HHAI; DNA methyltransferase	94.77
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	94.74
2py6_A	409	Methyltransferase FKBM; YP_546752.1, structural ge	94.69
3gqv_A	371	Enoyl reductase; medium-chain reductase (MDR super	94.58
4a0s_A	447	Octenoyl-COA reductase/carboxylase; oxidoreductase	94.57
4h0n_A	333	DNMT2; SAH binding, transferase; HET: SAH; 2.71A {	94.39
3pi7_A	349	NADH oxidoreductase; groes-like fold, NAD(P)-bindi	94.19
3tqh_A	321	Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella	94.18
2vn8_A	375	Reticulon-4-interacting protein 1; mitochondrion,	94.03
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	93.91
1tt7_A	330	YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st	93.74
3vyw_A	308	MNMC2; tRNA wobble uridine, modification enzyme, g	93.62
3ubt_Y	331	Modification methylase HAEIII; protein-DNA complex	93.62
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	93.44
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	93.36
2zig_A	297	TTHA0409, putative modification methylase; methylt	93.34
2uyo_A	310	Hypothetical protein ML2640; putative methyltransf	92.76
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	92.0
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	91.92
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	91.89
3me5_A	482	Cytosine-specific methyltransferase; structural ge	91.71
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	91.38
3c85_A	183	Putative glutathione-regulated potassium-efflux S	90.94
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	90.59
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	90.19
1zsy_A	357	Mitochondrial 2-enoyl thioester reductase; medium-	89.94
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	89.3
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	89.1
4a27_A	349	Synaptic vesicle membrane protein VAT-1 homolog-L;	88.91
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	88.81
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	88.74
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	88.64
3iup_A	379	Putative NADPH:quinone oxidoreductase; YP_296108.1	88.58
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	88.0
1h2b_A	359	Alcohol dehydrogenase; oxidoreductase, archaea, hy	87.97
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	87.96
1gu7_A	364	Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s	87.84
3slk_A	795	Polyketide synthase extender module 2; rossmann fo	87.71
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	87.68
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	87.6
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	87.24
3ojo_A	431	CAP5O; rossmann fold, complex with cofactor NAD an	87.01
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	86.84
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	86.63
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	86.42
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	86.38
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	86.16
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	85.95
1eg2_A	319	Modification methylase RSRI; rossmann fold, exocyc	85.86
4g65_A	461	TRK system potassium uptake protein TRKA; structur	85.69
1zkd_A	387	DUF185; NESG, RPR58, structural genomics, PSI, pro	85.56
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	85.53
1id1_A	153	Putative potassium channel protein; RCK domain, E.	85.27
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	85.19
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	85.06
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	84.43
3swr_A	1002	DNA (cytosine-5)-methyltransferase 1; epigenetics,	84.21
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	83.88
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	83.28
3grk_A	293	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	83.0
4eso_A	255	Putative oxidoreductase; NADP, structural genomics	82.87
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	82.81
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	82.78
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	82.57
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	82.23
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	82.22
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	81.99
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	81.83
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	81.57
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	81.52
2hwk_A	320	Helicase NSP2; rossman fold, alpha/beta/alpha, mul	81.36
3f9i_A	249	3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto	81.3
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	81.12
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	80.35
3oig_A	266	Enoyl-[acyl-carrier-protein] reductase [NADH]; fat	80.19

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}

Probab=100.00  E-value=4.5e-49  Score=331.71  Aligned_cols=245  Identities=27%  Similarity=0.516  Sum_probs=212.6

Q ss_pred             hhhHHHHHHHHhhCCCChHHHHHHHHhhCCCCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhcCCCceEEeC
Q 037961            3 ELFIKQANLYAVARPNYPKELFKLIASKTPKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKLPNIRYQLT   82 (262)
Q Consensus         3 ~~F~~~a~~Y~~~rp~yp~~~~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~   82 (262)
                      ++|++.|+.|+++||.||++++++|....+...+|||||||+|.++..|++++.+|+|+|+|+.|++.|++.+++.+.++
T Consensus         9 d~F~~~a~~Y~~~Rp~yp~~l~~~l~~~~~~~~~vLDvGcGtG~~~~~l~~~~~~v~gvD~s~~ml~~a~~~~~v~~~~~   88 (257)
T 4hg2_A            9 DHFTPVADAYRAFRPRYPRALFRWLGEVAPARGDALDCGCGSGQASLGLAEFFERVHAVDPGEAQIRQALRHPRVTYAVA   88 (257)
T ss_dssp             -----------CCCCCCCHHHHHHHHHHSSCSSEEEEESCTTTTTHHHHHTTCSEEEEEESCHHHHHTCCCCTTEEEEEC
T ss_pred             HHHHHHHHHHHHHCCCcHHHHHHHHHHhcCCCCCEEEEcCCCCHHHHHHHHhCCEEEEEeCcHHhhhhhhhcCCceeehh
Confidence            67999999999999999999999999999888899999999999999999999999999999999999999999999986


Q ss_pred             CCCchhhhhhccCCCCceeeEEEccccccCChhHHHHHHHHhhcCCCeEEEEEecCCCcccHHHHHhhcccccCCCCCCc
Q 037961           83 PTMSITELEQNVATQSSVDLVTIASALHWFDLPQFYKQVKWVLKKPSGVIAAWTYTMPEINESVGAVFKPFDTIDCNPFW  162 (262)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~D~V~~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (262)
                      +      ++++++++++||+|++++++||+|++++++++.|+|| |||+|++|.+......+.++.++.+++...+.++|
T Consensus        89 ~------~e~~~~~~~sfD~v~~~~~~h~~~~~~~~~e~~rvLk-pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (257)
T 4hg2_A           89 P------AEDTGLPPASVDVAIAAQAMHWFDLDRFWAELRRVAR-PGAVFAAVTYGLTRVDPEVDAVVDRLYHGLLARDW  161 (257)
T ss_dssp             C------TTCCCCCSSCEEEEEECSCCTTCCHHHHHHHHHHHEE-EEEEEEEEEECCCBCCHHHHHHHHHHHHTTTGGGC
T ss_pred             h------hhhhcccCCcccEEEEeeehhHhhHHHHHHHHHHHcC-CCCEEEEEECCCCCCCHHHHHHHHHHHhccccccc
Confidence            5      7788899999999999999999999999999999999 99999999988777778888888888777788999


Q ss_pred             cccchhHHhcCCCCCCCCCCCCCCCCCCCCcceeEeEeecHHHHHHHHhhhhHHHHHHHhCCccchHHHHHHHHHHhccC
Q 037961          163 APQRKLVDKKYMSIDFPFEPVDGYENTGPFDQFVVEKMMDLDDYFKFIRSCSAYQKAKDKGVELLTENVMEKFKAAWNED  242 (262)
Q Consensus       163 ~~~~~~~~~~~~~~~~~f~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~~~~~~~~~~~~l~~~~~~~l~~~~~~~  242 (262)
                      .+.+.++++.|+++.+||.+++..       .+.++..+|++++++|++|+|+|+.+.++....+.+++.+.|.+.|+..
T Consensus       162 ~~~~~~~~~~y~~l~~pf~~~~~~-------~~~~~~~~tl~~~~~~l~T~S~~~~~~~~~~~d~l~~~~~~l~~~~g~~  234 (257)
T 4hg2_A          162 PPERVHVESGYRTLPFPFPELEAP-------PLEIEERWPMDAFLGYLGTWSAVTAHRRRTGADPLAEIAPALRAAWGTP  234 (257)
T ss_dssp             CSCCHHHHTTTTTSCCCSCEECCC-------CCEEEEEECHHHHHHHHTTSHHHHHHHHHHSSCHHHHHHHHHHHHHSST
T ss_pred             chhhhHHHhhhhhCCCCCccceee-------EEEEEEEecHHHHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHhcCCC
Confidence            999999999999999999877532       6788899999999999999999999988765556666999999999875


Q ss_pred             CCCeEEEEEeEEEEEEEeCC
Q 037961          243 GQSQKIARFRVYLRIGKVGN  262 (262)
Q Consensus       243 ~~~~~~~~~~~~~~~~rk~~  262 (262)
                      . ..+++.|++++.+||++|
T Consensus       235 ~-~~~~v~~pi~l~~Grv~p  253 (257)
T 4hg2_A          235 E-RPLRVTWPIAIRAGRILP  253 (257)
T ss_dssp             T-SCEEEEEEEEEEEEESSC
T ss_pred             C-cEEEEEEEEEEEEEEECc
Confidence            4 478999999999999875

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.4e-35  Score=251.72  Aligned_cols=246  Identities=20%  Similarity=0.415  Sum_probs=195.0

Q ss_pred             HHHHHHhhCCCChHHHHHHHHhhC-CCCCeEEEEcCcccHhHHHHH---hhCCeEEEEcCCHHHHHHHhc--------CC
Q 037961            8 QANLYAVARPNYPKELFKLIASKT-PKRNLAWDVGTRSGQAAASLA---QIYQHVIATDTSPKQLKFAIK--------LP   75 (262)
Q Consensus         8 ~a~~Y~~~rp~yp~~~~~~l~~~~-~~~~~vlDvGcG~G~~~~~l~---~~~~~v~~vD~s~~~~~~a~~--------~~   75 (262)
                      .++.|+++||.||+++++.|.... +++.+|||+|||+|..+..++   ..+.+|+|+|+|+.|++.|++        ..
T Consensus        10 ~~~~y~~~rp~y~~~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~   89 (299)
T 3g5t_A           10 NSERYSSSRPSYPSDFYKMIDEYHDGERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYK   89 (299)
T ss_dssp             CHHHHHHHSCCCCHHHHHHHHHHCCSCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCT
T ss_pred             ChHHHhhcCCCCCHHHHHHHHHHhcCCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCC
Confidence            578999999999999999999886 478899999999999999999   457899999999999999975        35


Q ss_pred             CceEEeCCCCchhhhhhccCCC------CceeeEEEccccccCChhHHHHHHHHhhcCCCeEEEEEecCCCcc--cHHHH
Q 037961           76 NIRYQLTPTMSITELEQNVATQ------SSVDLVTIASALHWFDLPQFYKQVKWVLKKPSGVIAAWTYTMPEI--NESVG  147 (262)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~------~~~D~V~~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~~~~~~--~~~~~  147 (262)
                      ++.+.+++      ++++++++      ++||+|+++.++||+|+..+++++.++|| |||.|+++.+..+.+  .+.+.
T Consensus        90 ~v~~~~~d------~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~l~~~~~~Lk-pgG~l~i~~~~~~~~~~~~~~~  162 (299)
T 3g5t_A           90 NVSFKISS------SDDFKFLGADSVDKQKIDMITAVECAHWFDFEKFQRSAYANLR-KDGTIAIWGYADPIFPDYPEFD  162 (299)
T ss_dssp             TEEEEECC------TTCCGGGCTTTTTSSCEEEEEEESCGGGSCHHHHHHHHHHHEE-EEEEEEEEEEEEEECTTCGGGT
T ss_pred             ceEEEEcC------HHhCCccccccccCCCeeEEeHhhHHHHhCHHHHHHHHHHhcC-CCcEEEEEecCCccccCcHHHH
Confidence            78888876      44444445      89999999999999999999999999999 999999977765433  23555


Q ss_pred             HhhcccccC--CCCCCcc-ccchhHHhcCCCCCCC---CCCCCCCCCC------------CCCcceeEeEeecHHHHHHH
Q 037961          148 AVFKPFDTI--DCNPFWA-PQRKLVDKKYMSIDFP---FEPVDGYENT------------GPFDQFVVEKMMDLDDYFKF  209 (262)
Q Consensus       148 ~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~---f~~v~~~~~~------------~~~~~~~~~~~~~~~~~~~~  209 (262)
                      .++.++...  .+.++|. +.+..+.+.+++++||   |+++......            .....+.....++++++++|
T Consensus       163 ~~~~~~~~~~~~~~~~w~~p~~~~~~~~l~~~gfp~~~f~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (299)
T 3g5t_A          163 DLMIEVPYGKQGLGPYWEQPGRSRLRNMLKDSHLDPELFHDIQVSYFCAEDVRDKVKLHQHTKKPLLIRKQVTLVEFADY  242 (299)
T ss_dssp             THHHHHHHCTTTTGGGSCTTHHHHHHTTTTTCCCCTTTEEEEEEEEECGGGGGCHHHHHHCSSCCCCCEEEECHHHHHHH
T ss_pred             HHHHHhccCcccccchhhchhhHHHHHhhhccCCChHHcCcceEEEecccccccccccccCCCCceeeeccccHHHHHHH
Confidence            566665432  5678998 8888889999999988   3555311000            00113556888999999999


Q ss_pred             HhhhhHHHHHHH--hCCc--cchHHHHHH-HHHHhccCCCCeEEEEEeEEEEEEEe
Q 037961          210 IRSCSAYQKAKD--KGVE--LLTENVMEK-FKAAWNEDGQSQKIARFRVYLRIGKV  260 (262)
Q Consensus       210 l~s~s~~~~~~~--~~~~--~l~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~rk  260 (262)
                      ++|+|.|..+.+  ++.+  .+.+.++++ |.+..+-.....+.+.|++++++|||
T Consensus       243 l~t~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~w~~~~~~~rk  298 (299)
T 3g5t_A          243 VRTWSAYHQWKQDPKNKDKEDVADWFIKESLRRRPELSTNTKIEVVWNTFYKLGKR  298 (299)
T ss_dssp             HTTSHHHHHHHHCGGGTTSCCHHHHHHHHHHHHCTTCCTTCCEEEEEEEEEEEEEE
T ss_pred             HHHhHHHHHHHhcccCCchhhHHHHHHHHHHHhccCCCCCCEEEEEecceeeeEec
Confidence            999999999988  6554  566668888 77744433223789999999999998

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=99.96  E-value=4.7e-28  Score=203.41  Aligned_cols=242  Identities=17%  Similarity=0.142  Sum_probs=170.1

Q ss_pred             ChhhhHHHHHHHHhhCCCChHHHHHHHHhh-------CCCCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhc
Q 037961            1 MAELFIKQANLYAVARPNYPKELFKLIASK-------TPKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIK   73 (262)
Q Consensus         1 ~~~~F~~~a~~Y~~~rp~yp~~~~~~l~~~-------~~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~   73 (262)
                      |+..|++.++.|++.+. ++....+.+...       .+++.+|||+|||+|.++..+++.+.+|+|+|+|+.|++.+++
T Consensus         1 m~~~~~~~a~~y~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~   79 (263)
T 2yqz_A            1 MSSALLRAAYAYDRLRA-HPPEVAGQIATAMASAVHPKGEEPVFLELGVGTGRIALPLIARGYRYIALDADAAMLEVFRQ   79 (263)
T ss_dssp             -CHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHCCCSSSCCEEEEETCTTSTTHHHHHTTTCEEEEEESCHHHHHHHHH
T ss_pred             CCCchHHHHHHHhhhcc-cChHHHHHHHHHHHHhhcCCCCCCEEEEeCCcCCHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence            78999999999999874 556555554433       3577899999999999999999999999999999999999875


Q ss_pred             C-----CCceEEeCCCCchhhhhhccCCCCceeeEEEccccccC-ChhHHHHHHHHhhcCCCeEEEEE-ecCC-Cc---c
Q 037961           74 L-----PNIRYQLTPTMSITELEQNVATQSSVDLVTIASALHWF-DLPQFYKQVKWVLKKPSGVIAAW-TYTM-PE---I  142 (262)
Q Consensus        74 ~-----~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~~~~-d~~~~l~~~~r~Lk~pgG~l~i~-~~~~-~~---~  142 (262)
                      .     +++.+..++      ++++++++++||+|++..++||+ |+..+++++.++|| |||.+++. .... ..   +
T Consensus        80 ~~~~~~~~~~~~~~d------~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~-pgG~l~~~~~~~~~~~~~~~  152 (263)
T 2yqz_A           80 KIAGVDRKVQVVQAD------ARAIPLPDESVHGVIVVHLWHLVPDWPKVLAEAIRVLK-PGGALLEGWDQAEASPEWTL  152 (263)
T ss_dssp             HTTTSCTTEEEEESC------TTSCCSCTTCEEEEEEESCGGGCTTHHHHHHHHHHHEE-EEEEEEEEEEEECCCHHHHH
T ss_pred             HhhccCCceEEEEcc------cccCCCCCCCeeEEEECCchhhcCCHHHHHHHHHHHCC-CCcEEEEEecCCCccHHHHH
Confidence            3     578888765      56677788899999999999999 99999999999999 99999985 2221 11   1


Q ss_pred             cHHHHHhhcccccCCCCCCcc-ccchhHHhcCCCCCCCCCCCCCCCCCCCCcceeEeEeecHHHHHHHHhhh--hHHHHH
Q 037961          143 NESVGAVFKPFDTIDCNPFWA-PQRKLVDKKYMSIDFPFEPVDGYENTGPFDQFVVEKMMDLDDYFKFIRSC--SAYQKA  219 (262)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~f~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~--s~~~~~  219 (262)
                      ...+.+++..+.. .....+. .....+.+.+.+.+  |+.+..       ....+....+.+++++++.+.  +.+..+
T Consensus       153 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~G--f~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (263)
T 2yqz_A          153 QERWRAFAAEEGF-PVERGLHAKRLKEVEEALRRLG--LKPRTR-------EVARWREERTPREALEALSERLYSFTQGL  222 (263)
T ss_dssp             HHHHHHHHHHHTC-CCCCCHHHHHHHHHHHHHHHTT--CCCEEE-------EEEEEEEEECHHHHHHHHHTTCSGGGSSS
T ss_pred             HHHHHHHHHHhCC-CcccccccCCHHHHHHHHHHcC--CCcceE-------EEeeeecCCCHHHHHHHHHHhhcccccCC
Confidence            2334444433221 1000111 11223445555556  432221       144566778999999998743  433333


Q ss_pred             HHhCCccchHHHHHHHHHHhccCCCCeEEEEEeEEEEEEEeC
Q 037961          220 KDKGVELLTENVMEKFKAAWNEDGQSQKIARFRVYLRIGKVG  261 (262)
Q Consensus       220 ~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~rk~  261 (262)
                      .++..+.+.+++++.+.+.++... ..+.+.|.+++.+||||
T Consensus       223 ~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~rkp  263 (263)
T 2yqz_A          223 PEPVHARVMERLWAWAEAELGDLD-RPFPVEKRFLLRVSRLG  263 (263)
T ss_dssp             CHHHHHHHHHHHHHHHHHHSSCTT-SCEEEEEEEEEEEEECC
T ss_pred             CHHHHHHHHHHHHHHHHHhcCCcC-ccccccceeEEEeeecC
Confidence            344445556667777877776532 46899999999999997

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=99.91  E-value=6.4e-24  Score=180.27  Aligned_cols=232  Identities=16%  Similarity=0.185  Sum_probs=144.0

Q ss_pred             HHHHHhh---CCCChHHHHHHHHhhCCCCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhcC-CCceEEeCCC
Q 037961            9 ANLYAVA---RPNYPKELFKLIASKTPKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKL-PNIRYQLTPT   84 (262)
Q Consensus         9 a~~Y~~~---rp~yp~~~~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~-~~~~~~~~~~   84 (262)
                      +..|++.   .+.+.+.+++.+.  ..++.+|||+|||+|.++..+++.+.+|+|+|+|+.|++.+++. +++.+..++ 
T Consensus        32 a~~y~~~~~~~~~~~~~l~~~l~--~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~d-  108 (279)
T 3ccf_A           32 ATLYQDKHSFVWQYGEDLLQLLN--PQPGEFILDLGCGTGQLTEKIAQSGAEVLGTDNAATMIEKARQNYPHLHFDVAD-  108 (279)
T ss_dssp             ---------CCSSSCCHHHHHHC--CCTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHCTTSCEEECC-
T ss_pred             HHHHhhcchHHHHHHHHHHHHhC--CCCCCEEEEecCCCCHHHHHHHhCCCeEEEEECCHHHHHHHHhhCCCCEEEECC-
Confidence            4566552   2333344444442  24678999999999999999999899999999999999999864 678888765 


Q ss_pred             CchhhhhhccCCCCceeeEEEccccccC-ChhHHHHHHHHhhcCCCeEEEEEecCCCcc---cHHHHHhhccccc---CC
Q 037961           85 MSITELEQNVATQSSVDLVTIASALHWF-DLPQFYKQVKWVLKKPSGVIAAWTYTMPEI---NESVGAVFKPFDT---ID  157 (262)
Q Consensus        85 ~~~~~~~~~~~~~~~~D~V~~~~~~~~~-d~~~~l~~~~r~Lk~pgG~l~i~~~~~~~~---~~~~~~~~~~~~~---~~  157 (262)
                           ++.+++ +++||+|++..++||+ |+..+++++.++|| |||.|++........   ...+...+.....   ..
T Consensus       109 -----~~~~~~-~~~fD~v~~~~~l~~~~d~~~~l~~~~~~Lk-pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (279)
T 3ccf_A          109 -----ARNFRV-DKPLDAVFSNAMLHWVKEPEAAIASIHQALK-SGGRFVAEFGGKGNIKYILEALYNALETLGIHNPQA  181 (279)
T ss_dssp             -----TTTCCC-SSCEEEEEEESCGGGCSCHHHHHHHHHHHEE-EEEEEEEEEECTTTTHHHHHHHHHHHHHHTCCCGGG
T ss_pred             -----hhhCCc-CCCcCEEEEcchhhhCcCHHHHHHHHHHhcC-CCcEEEEEecCCcchHHHHHHHHHHHHhcCCccccC
Confidence                 555665 5789999999999999 99999999999999 999999855443222   1222222222211   00


Q ss_pred             CCCCccccchhHHhcCCCCCCCCCCCCCCCCCCCCcceeEeEee--cHHHHHHHHhhhh--HHHHHHHhCCccchHHHHH
Q 037961          158 CNPFWAPQRKLVDKKYMSIDFPFEPVDGYENTGPFDQFVVEKMM--DLDDYFKFIRSCS--AYQKAKDKGVELLTENVME  233 (262)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~f~~v~~~~~~~~~~~~~~~~~~--~~~~~~~~l~s~s--~~~~~~~~~~~~l~~~~~~  233 (262)
                      ..+........+.+.+.+.+  |+.+...       .+.....+  +.+++..+++++.  .+..+.++..+.+.+.+++
T Consensus       182 ~~~~~~~~~~~~~~~l~~aG--f~~~~~~-------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  252 (279)
T 3ccf_A          182 LNPWYFPSIGEYVNILEKQG--FDVTYAA-------LFNRPTTLAEGEFGMANWIQMFASAFLVGLTPDQQVQLIRKVEA  252 (279)
T ss_dssp             GCCCCCCCHHHHHHHHHHHT--EEEEEEE-------EEECCEECSSGGGHHHHHHHHHCHHHHTTCCHHHHHHHHHHHHH
T ss_pred             cCceeCCCHHHHHHHHHHcC--CEEEEEE-------EecccccccCCHHHHHHHHHHhhHHHhccCCHHHHHHHHHHHHH
Confidence            01111111222334444444  3322210       11112222  4567788887763  2222223333455555666


Q ss_pred             HHHHHhccCCCCeEEEEEeEEEEEEEeC
Q 037961          234 KFKAAWNEDGQSQKIARFRVYLRIGKVG  261 (262)
Q Consensus       234 ~l~~~~~~~~~~~~~~~~~~~~~~~rk~  261 (262)
                      .+.+.+..++  .+..+|..++++|+||
T Consensus       253 ~~~~~~~~~g--~~~~~~~~~~v~a~Kp  278 (279)
T 3ccf_A          253 TLQDKLYHQE--SWTADYRRIRIVSIKA  278 (279)
T ss_dssp             HHHHHHEETT--EEEECCEEEEEEEEEC
T ss_pred             HHHhhccCCC--cEEEEEEEEEEEEecC
Confidence            6766655555  7899999999999997

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=99.89  E-value=1e-22  Score=170.48  Aligned_cols=232  Identities=16%  Similarity=0.183  Sum_probs=149.8

Q ss_pred             HHHHHhhCCCChHHHHHHHHhhC--CCCCeEEEEcCcccHhHHHHHhh--CCeEEEEcCCHHHHHHHhc-CCCceEEeCC
Q 037961            9 ANLYAVARPNYPKELFKLIASKT--PKRNLAWDVGTRSGQAAASLAQI--YQHVIATDTSPKQLKFAIK-LPNIRYQLTP   83 (262)
Q Consensus         9 a~~Y~~~rp~yp~~~~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~-~~~~~~~~~~   83 (262)
                      +..|++........ ...+....  .++.+|||+|||+|.++..+++.  +.+|+|+|+|+.|++.+++ .+++.+..++
T Consensus         8 ~~~y~~~~~~~~~~-~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~d   86 (259)
T 2p35_A            8 AQQYLKFEDERTRP-ARDLLAQVPLERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRLPNTNFGKAD   86 (259)
T ss_dssp             CGGGBCCCCGGGHH-HHHHHTTCCCSCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHHSTTSEEEECC
T ss_pred             HHHHHHHHHHHHHH-HHHHHHhcCCCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCCCcEEEECC
Confidence            55676655444333 34455544  36688999999999999999987  8899999999999999986 4788888765


Q ss_pred             CCchhhhhhccCCCCceeeEEEccccccC-ChhHHHHHHHHhhcCCCeEEEEEecCCCc--ccHHHHHhhc-----cccc
Q 037961           84 TMSITELEQNVATQSSVDLVTIASALHWF-DLPQFYKQVKWVLKKPSGVIAAWTYTMPE--INESVGAVFK-----PFDT  155 (262)
Q Consensus        84 ~~~~~~~~~~~~~~~~~D~V~~~~~~~~~-d~~~~l~~~~r~Lk~pgG~l~i~~~~~~~--~~~~~~~~~~-----~~~~  155 (262)
                            +++++ ++++||+|+++.++||+ |+..+++++.++|| |||.|++.......  ....+.++..     ....
T Consensus        87 ------~~~~~-~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~-pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (259)
T 2p35_A           87 ------LATWK-PAQKADLLYANAVFQWVPDHLAVLSQLMDQLE-SGGVLAVQMPDNLQEPTHIAMHETADGGPWKDAFS  158 (259)
T ss_dssp             ------TTTCC-CSSCEEEEEEESCGGGSTTHHHHHHHHGGGEE-EEEEEEEEEECCTTSHHHHHHHHHHHHSTTGGGC-
T ss_pred             ------hhhcC-ccCCcCEEEEeCchhhCCCHHHHHHHHHHhcC-CCeEEEEEeCCCCCcHHHHHHHHHhcCcchHHHhc
Confidence                  55566 67899999999999999 99999999999999 99999985543211  1122222221     1111


Q ss_pred             CC---CCCCccccchhHHhcCCCCCCCCCCCCCCCCCCCCcceeE-eEeecHHHHHHHHhhhhH--H-HHHHHhCCccch
Q 037961          156 ID---CNPFWAPQRKLVDKKYMSIDFPFEPVDGYENTGPFDQFVV-EKMMDLDDYFKFIRSCSA--Y-QKAKDKGVELLT  228 (262)
Q Consensus       156 ~~---~~~~~~~~~~~~~~~~~~~~~~f~~v~~~~~~~~~~~~~~-~~~~~~~~~~~~l~s~s~--~-~~~~~~~~~~l~  228 (262)
                      +.   ..+++  ....+.+.+.+.+  |+ ++..       .... ....+.++++.++++.+.  + ..+.++..+.+.
T Consensus       159 ~~~~~~~~~~--~~~~~~~~l~~aG--f~-v~~~-------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  226 (259)
T 2p35_A          159 GGGLRRKPLP--PPSDYFNALSPKS--SR-VDVW-------HTVYNHPMKDADSIVEWVKGTGLRPYLAAAGEENREAFL  226 (259)
T ss_dssp             ------CCCC--CHHHHHHHHGGGE--EE-EEEE-------EEEEEEEESCHHHHHHHHTTTTTTHHHHTTCGGGHHHHH
T ss_pred             cccccccCCC--CHHHHHHHHHhcC--Cc-eEEE-------EEEeeeccCCchHHhhhhhcCcchHHHHhCCHHHHHHHH
Confidence            00   01111  1222344455545  32 1100       1111 122368889999987652  1 223333334455


Q ss_pred             HHHHHHHHHHhccCCCCeEEEEEeEEEEEEEeC
Q 037961          229 ENVMEKFKAAWNEDGQSQKIARFRVYLRIGKVG  261 (262)
Q Consensus       229 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~rk~  261 (262)
                      +++.+.+.+.+.....+.+.++|.+.+++|+||
T Consensus       227 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~Kp  259 (259)
T 2p35_A          227 ADYTRRIAAAYPPMADGRLLLRFPRLFVVAVKK  259 (259)
T ss_dssp             HHHHHHHHHHSCCCTTSCEEEEEEEEEEEEEEC
T ss_pred             HHHHHHHHHhCCCCCCCeEEEEeeeEEEEEecC
Confidence            556666766655322236899999999999996

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=99.89  E-value=1.6e-22  Score=169.74  Aligned_cols=229  Identities=16%  Similarity=0.147  Sum_probs=136.4

Q ss_pred             HHHHhhCCCChHHHHHHHHhhC--CCCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhcC------CCceEEe
Q 037961           10 NLYAVARPNYPKELFKLIASKT--PKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKL------PNIRYQL   81 (262)
Q Consensus        10 ~~Y~~~rp~yp~~~~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~------~~~~~~~   81 (262)
                      .-|...-..++..-++.+...+  .++.+|||+|||+|.++..+++.+.+|+|+|+|+.|++.+++.      +++.+..
T Consensus        12 ~~~~~s~~~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~   91 (260)
T 1vl5_A           12 HMYVTSQIHAKGSDLAKLMQIAALKGNEEVLDVATGGGHVANAFAPFVKKVVAFDLTEDILKVARAFIEGNGHQQVEYVQ   91 (260)
T ss_dssp             -----------CCCHHHHHHHHTCCSCCEEEEETCTTCHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred             eeeecCccccCHHHHHHHHHHhCCCCCCEEEEEeCCCCHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEE
Confidence            3444433333333344444433  4678999999999999999999989999999999999998753      5688887


Q ss_pred             CCCCchhhhhhccCCCCceeeEEEccccccC-ChhHHHHHHHHhhcCCCeEEEEEecCCCc--ccHHHHHhhcccccCCC
Q 037961           82 TPTMSITELEQNVATQSSVDLVTIASALHWF-DLPQFYKQVKWVLKKPSGVIAAWTYTMPE--INESVGAVFKPFDTIDC  158 (262)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~D~V~~~~~~~~~-d~~~~l~~~~r~Lk~pgG~l~i~~~~~~~--~~~~~~~~~~~~~~~~~  158 (262)
                      +|      ++++++++++||+|+++.++||+ |+..+++++.++|| |||.|++.....+.  ....+...+..+.....
T Consensus        92 ~d------~~~l~~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~Lk-pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (260)
T 1vl5_A           92 GD------AEQMPFTDERFHIVTCRIAAHHFPNPASFVSEAYRVLK-KGGQLLLVDNSAPENDAFDVFYNYVEKERDYSH  164 (260)
T ss_dssp             CC------C-CCCSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEE-EEEEEEEEEEEBCSSHHHHHHHHHHHHHHCTTC
T ss_pred             ec------HHhCCCCCCCEEEEEEhhhhHhcCCHHHHHHHHHHHcC-CCCEEEEEEcCCCCCHHHHHHHHHHHHhcCccc
Confidence            65      66677888999999999999999 99999999999999 99999985432221  11111111111111011


Q ss_pred             CCCccccchhHHhcCCCCCCCCCCCCCCCCCCCCcceeEeEeecHHHHHHHHhhhhHHHHHHHhCCccchHHHHHHHHHH
Q 037961          159 NPFWAPQRKLVDKKYMSIDFPFEPVDGYENTGPFDQFVVEKMMDLDDYFKFIRSCSAYQKAKDKGVELLTENVMEKFKAA  238 (262)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~f~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~~~~~~~~~~~~l~~~~~~~l~~~  238 (262)
                      .+.+..  ..+.+.+...+  |+.+.         .......+++.++...+...+.......+.   +.+ ..+.+.+.
T Consensus       165 ~~~~~~--~~~~~~l~~aG--f~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~  227 (260)
T 1vl5_A          165 HRAWKK--SDWLKMLEEAG--FELEE---------LHCFHKTFIFEDWCDRMNVTTEKKQELSDF---IKS-KPTEYYQK  227 (260)
T ss_dssp             CCCCBH--HHHHHHHHHHT--CEEEE---------EEEEEEEEEHHHHHHHTTCCHHHHHHHHHH---HHT-SCHHHHHH
T ss_pred             cCCCCH--HHHHHHHHHCC--CeEEE---------EEEeeccCCHHHHHHhcCCCHHHHHHHHHH---HHh-CcHHHHHH
Confidence            122221  12233444444  33222         223344566777776665544322221111   111 12334444


Q ss_pred             hcc-C-CCCeEEEEEeEEEEEEEeCC
Q 037961          239 WNE-D-GQSQKIARFRVYLRIGKVGN  262 (262)
Q Consensus       239 ~~~-~-~~~~~~~~~~~~~~~~rk~~  262 (262)
                      +.. . .+..+.+++...+++|+||.
T Consensus       228 ~~~~~~~g~~~~~~~~~~~~~a~k~~  253 (260)
T 1vl5_A          228 FKIVVEDGRVYSFRGESILMKARKPT  253 (260)
T ss_dssp             TTCEEETTEEEEEEEEEEEEEEECCC
T ss_pred             cceeccCCCcceEEeeEEEEEEEccc
Confidence            543 1 21137899999999999973

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=99.87  E-value=2.2e-21  Score=161.06  Aligned_cols=209  Identities=16%  Similarity=0.150  Sum_probs=137.0

Q ss_pred             CCCCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhcC------CCceEEeCCCCchhhhhhccCCCCceeeEE
Q 037961           31 TPKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKL------PNIRYQLTPTMSITELEQNVATQSSVDLVT  104 (262)
Q Consensus        31 ~~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~  104 (262)
                      .+++.+|||+|||+|.++..+++.+.+|+|+|+|+.|++.+++.      +++.+..++      ++.+++++++||+|+
T Consensus        19 ~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d------~~~~~~~~~~fD~v~   92 (239)
T 1xxl_A           19 CRAEHRVLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVASSFAQEKGVENVRFQQGT------AESLPFPDDSFDIIT   92 (239)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECB------TTBCCSCTTCEEEEE
T ss_pred             cCCCCEEEEEccCcCHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEecc------cccCCCCCCcEEEEE
Confidence            45778999999999999999999999999999999999988753      568888764      666777889999999


Q ss_pred             EccccccC-ChhHHHHHHHHhhcCCCeEEEEEecCCCcccHHHHHhhcc---cccCCCCCCccccchhHHhcCCCCCCCC
Q 037961          105 IASALHWF-DLPQFYKQVKWVLKKPSGVIAAWTYTMPEINESVGAVFKP---FDTIDCNPFWAPQRKLVDKKYMSIDFPF  180 (262)
Q Consensus       105 ~~~~~~~~-d~~~~l~~~~r~Lk~pgG~l~i~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~f  180 (262)
                      +..++||+ |+..+++++.++|| |||.+++.....+.. ......+..   .........+.  ...+.+.+.+.+  |
T Consensus        93 ~~~~l~~~~~~~~~l~~~~~~Lk-pgG~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ll~~aG--f  166 (239)
T 1xxl_A           93 CRYAAHHFSDVRKAVREVARVLK-QDGRFLLVDHYAPED-PVLDEFVNHLNRLRDPSHVRESS--LSEWQAMFSANQ--L  166 (239)
T ss_dssp             EESCGGGCSCHHHHHHHHHHHEE-EEEEEEEEEECBCSS-HHHHHHHHHHHHHHCTTCCCCCB--HHHHHHHHHHTT--E
T ss_pred             ECCchhhccCHHHHHHHHHHHcC-CCcEEEEEEcCCCCC-hhHHHHHHHHHHhccccccCCCC--HHHHHHHHHHCC--C
Confidence            99999999 99999999999999 999999855433221 222222211   11101111221  122334444444  3


Q ss_pred             CCCCCCCCCCCCcceeEeEeecHHHHHHHHhhhhHHHHHHHhCCccchHHHHHHHHHHhccCCCCeEEEEEeEEEEEEEe
Q 037961          181 EPVDGYENTGPFDQFVVEKMMDLDDYFKFIRSCSAYQKAKDKGVELLTENVMEKFKAAWNEDGQSQKIARFRVYLRIGKV  260 (262)
Q Consensus       181 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~rk  260 (262)
                      +.+.         ...+...++..++++.+++.+............+.++.++.+...+. .++..+.+++...++.|.|
T Consensus       167 ~~~~---------~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~G~~~~~t~~~~~~~~~k  236 (239)
T 1xxl_A          167 AYQD---------IQKWNLPIQYDSWIKRGGTPADREKQIITHLNHASDEARDTFCITLN-QNGQPISFCLKAILIQGIK  236 (239)
T ss_dssp             EEEE---------EEEEEEEEEHHHHHHHHTCCHHHHHHHHHHHHTCCHHHHHHTTCEEC-TTSCEEEEEEEEEEEEEEE
T ss_pred             cEEE---------EEeecCccCHHHHHHHcCCCHHHHHHHHHHHHhCCHHHHHHhCeeec-CCCCceeEEeeeeehehhc
Confidence            3222         33445667788888888776654443333222233323333332111 2322368999999998887


Q ss_pred             C
Q 037961          261 G  261 (262)
Q Consensus       261 ~  261 (262)
                      .
T Consensus       237 ~  237 (239)
T 1xxl_A          237 R  237 (239)
T ss_dssp             C
T ss_pred             c
Confidence            4

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}

Probab=99.83  E-value=1.5e-20  Score=158.05  Aligned_cols=126  Identities=21%  Similarity=0.294  Sum_probs=102.6

Q ss_pred             hhHHHHHHHHhhCCCChHHHHHHHHhhC--CCCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhcCCCceEEe
Q 037961            4 LFIKQANLYAVARPNYPKELFKLIASKT--PKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKLPNIRYQL   81 (262)
Q Consensus         4 ~F~~~a~~Y~~~rp~yp~~~~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~   81 (262)
                      .|+..++.|++.++.++ .+.+.+....  +++.+|||+|||+|.++..+++.+.+|+|+|+|+.|++.+++..++.+..
T Consensus         4 ~y~~~a~~y~~~~~~~~-~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~   82 (261)
T 3ege_A            4 IYNSIGKQYSQTRVPDI-RIVNAIINLLNLPKGSVIADIGAGTGGYSVALANQGLFVYAVEPSIVMRQQAVVHPQVEWFT   82 (261)
T ss_dssp             ---------CCSBCCCH-HHHHHHHHHHCCCTTCEEEEETCTTSHHHHHHHTTTCEEEEECSCHHHHHSSCCCTTEEEEC
T ss_pred             HHHHHHHHHhhcccccH-HHHHHHHHHhCCCCCCEEEEEcCcccHHHHHHHhCCCEEEEEeCCHHHHHHHHhccCCEEEE
Confidence            68999999999999886 4666676665  57789999999999999999999999999999999999998877888887


Q ss_pred             CCCCchhhhhhccCCCCceeeEEEccccccC-ChhHHHHHHHHhhcCCCeEEEEEecC
Q 037961           82 TPTMSITELEQNVATQSSVDLVTIASALHWF-DLPQFYKQVKWVLKKPSGVIAAWTYT  138 (262)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~D~V~~~~~~~~~-d~~~~l~~~~r~Lk~pgG~l~i~~~~  138 (262)
                      ++      ++++++++++||+|++..++||+ |+..+++++.++||  ||.+++..+.
T Consensus        83 ~d------~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~Lk--gG~~~~~~~~  132 (261)
T 3ege_A           83 GY------AENLALPDKSVDGVISILAIHHFSHLEKSFQEMQRIIR--DGTIVLLTFD  132 (261)
T ss_dssp             CC------TTSCCSCTTCBSEEEEESCGGGCSSHHHHHHHHHHHBC--SSCEEEEEEC
T ss_pred             Cc------hhhCCCCCCCEeEEEEcchHhhccCHHHHHHHHHHHhC--CcEEEEEEcC
Confidence            65      66677888999999999999999 99999999999998  8987775554

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=99.81  E-value=1.7e-19  Score=149.25  Aligned_cols=129  Identities=14%  Similarity=0.202  Sum_probs=100.3

Q ss_pred             hhhHHHHHHHHhhC-----CCChHHHHHHHHhhCCCCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhcC---
Q 037961            3 ELFIKQANLYAVAR-----PNYPKELFKLIASKTPKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKL---   74 (262)
Q Consensus         3 ~~F~~~a~~Y~~~r-----p~yp~~~~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~---   74 (262)
                      ..|+..++.|++..     ......+.+.+....+++.+|||+|||+|.++..+++.+.+|+|+|+|+.+++.+++.   
T Consensus        18 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~   97 (242)
T 3l8d_A           18 KKWDSSAEFWNQNSQEMWDSGSRSTIIPFFEQYVKKEAEVLDVGCGDGYGTYKLSRTGYKAVGVDISEVMIQKGKERGEG   97 (242)
T ss_dssp             --------------CHHHHTSTTTTHHHHHHHHSCTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHTTTCB
T ss_pred             HHHHhHHHHhhhhhhhccCcccHHHHHHHHHHHcCCCCeEEEEcCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhccc
Confidence            45566666665422     2334567888888888899999999999999999999999999999999999999875   


Q ss_pred             CCceEEeCCCCchhhhhhccCCCCceeeEEEccccccC-ChhHHHHHHHHhhcCCCeEEEEEecC
Q 037961           75 PNIRYQLTPTMSITELEQNVATQSSVDLVTIASALHWF-DLPQFYKQVKWVLKKPSGVIAAWTYT  138 (262)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~~~~-d~~~~l~~~~r~Lk~pgG~l~i~~~~  138 (262)
                      .++.+..++      +.++++++++||+|++..++||+ ++..+++++.++|+ |||.+++....
T Consensus        98 ~~~~~~~~d------~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~-pgG~l~i~~~~  155 (242)
T 3l8d_A           98 PDLSFIKGD------LSSLPFENEQFEAIMAINSLEWTEEPLRALNEIKRVLK-SDGYACIAILG  155 (242)
T ss_dssp             TTEEEEECB------TTBCSSCTTCEEEEEEESCTTSSSCHHHHHHHHHHHEE-EEEEEEEEEEC
T ss_pred             CCceEEEcc------hhcCCCCCCCccEEEEcChHhhccCHHHHHHHHHHHhC-CCeEEEEEEcC
Confidence            577887764      56667788999999999999999 89999999999999 99999986544

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=99.81  E-value=2.5e-19  Score=150.67  Aligned_cols=122  Identities=15%  Similarity=0.268  Sum_probs=94.7

Q ss_pred             HHHHHHH----hhCCCChHH--HHHHH-HhhCCCCCeEEEEcCcccHhHHHHHhh----CCeEEEEcCCHHHHHHHhcC-
Q 037961            7 KQANLYA----VARPNYPKE--LFKLI-ASKTPKRNLAWDVGTRSGQAAASLAQI----YQHVIATDTSPKQLKFAIKL-   74 (262)
Q Consensus         7 ~~a~~Y~----~~rp~yp~~--~~~~l-~~~~~~~~~vlDvGcG~G~~~~~l~~~----~~~v~~vD~s~~~~~~a~~~-   74 (262)
                      +.|+.|+    +.-|.|...  ++..+ ..+++++.+|||+|||+|..+..+++.    +++|+|+|+|+.|++.|+++ 
T Consensus        37 ~va~~fdd~i~rsvP~Y~~~~~~i~~l~~~~~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~  116 (261)
T 4gek_A           37 RVAEVFPDMIQRSVPGYSNIISMIGMLAERFVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHI  116 (261)
T ss_dssp             HHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHCCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHH
T ss_pred             chhhhhhhhHhhcCCCHHHHHHHHHHHHHHhCCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHH
Confidence            4567775    345888532  22223 345688999999999999999999875    56899999999999999852 


Q ss_pred             ------CCceEEeCCCCchhhhhhccCCCCceeeEEEccccccCCh---hHHHHHHHHhhcCCCeEEEEEec
Q 037961           75 ------PNIRYQLTPTMSITELEQNVATQSSVDLVTIASALHWFDL---PQFYKQVKWVLKKPSGVIAAWTY  137 (262)
Q Consensus        75 ------~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~~~~d~---~~~l~~~~r~Lk~pgG~l~i~~~  137 (262)
                            .+++++++|      +.++++  ++||+|+++.++||+++   ..++++++|+|| |||+|++...
T Consensus       117 ~~~~~~~~v~~~~~D------~~~~~~--~~~d~v~~~~~l~~~~~~~~~~~l~~i~~~Lk-pGG~lii~e~  179 (261)
T 4gek_A          117 DAYKAPTPVDVIEGD------IRDIAI--ENASMVVLNFTLQFLEPSERQALLDKIYQGLN-PGGALVLSEK  179 (261)
T ss_dssp             HTSCCSSCEEEEESC------TTTCCC--CSEEEEEEESCGGGSCHHHHHHHHHHHHHHEE-EEEEEEEEEE
T ss_pred             HhhccCceEEEeecc------cccccc--cccccceeeeeeeecCchhHhHHHHHHHHHcC-CCcEEEEEec
Confidence                  367888765      555554  56999999999999943   358999999999 9999998544

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=99.79  E-value=3.9e-19  Score=144.42  Aligned_cols=124  Identities=21%  Similarity=0.197  Sum_probs=104.9

Q ss_pred             hhhHHHHHHHHhhCCCChHHHHHHHHhhCCCCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhcCCCceEEeC
Q 037961            3 ELFIKQANLYAVARPNYPKELFKLIASKTPKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKLPNIRYQLT   82 (262)
Q Consensus         3 ~~F~~~a~~Y~~~rp~yp~~~~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~   82 (262)
                      ..|+..+..|......  ...+..+...++++.+|||+|||+|.++..+++.+.+|+|+|+|+.+++.+++..++.+..+
T Consensus        15 ~~~~~~~~~y~~~~~~--~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~   92 (211)
T 3e23_A           15 RFYRGNATAYAERQPR--SATLTKFLGELPAGAKILELGCGAGYQAEAMLAAGFDVDATDGSPELAAEASRRLGRPVRTM   92 (211)
T ss_dssp             HHHHHSHHHHTTCCCC--CHHHHHHHTTSCTTCEEEESSCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTSCCEEC
T ss_pred             HHHHHHHHHHhhccch--hHHHHHHHHhcCCCCcEEEECCCCCHHHHHHHHcCCeEEEECCCHHHHHHHHHhcCCceEEe
Confidence            5688888899886555  55566666777888899999999999999999999999999999999999987656777765


Q ss_pred             CCCchhhhhhccCCCCceeeEEEccccccC---ChhHHHHHHHHhhcCCCeEEEEEe
Q 037961           83 PTMSITELEQNVATQSSVDLVTIASALHWF---DLPQFYKQVKWVLKKPSGVIAAWT  136 (262)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~D~V~~~~~~~~~---d~~~~l~~~~r~Lk~pgG~l~i~~  136 (262)
                      +      +..++ ++++||+|++..++|++   ++..+++++.++|| |||.+++..
T Consensus        93 d------~~~~~-~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~Lk-pgG~l~~~~  141 (211)
T 3e23_A           93 L------FHQLD-AIDAYDAVWAHACLLHVPRDELADVLKLIWRALK-PGGLFYASY  141 (211)
T ss_dssp             C------GGGCC-CCSCEEEEEECSCGGGSCHHHHHHHHHHHHHHEE-EEEEEEEEE
T ss_pred             e------eccCC-CCCcEEEEEecCchhhcCHHHHHHHHHHHHHhcC-CCcEEEEEE
Confidence            4      55666 68899999999999999   45679999999999 999999844

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*

Probab=99.79  E-value=6.4e-19  Score=150.46  Aligned_cols=101  Identities=12%  Similarity=0.141  Sum_probs=76.0

Q ss_pred             CCCeEEEEcCcccHhHHHHH----hh--CCe--EEEEcCCHHHHHHHhcC-------CCceEEeCCCCchhhhhhc----
Q 037961           33 KRNLAWDVGTRSGQAAASLA----QI--YQH--VIATDTSPKQLKFAIKL-------PNIRYQLTPTMSITELEQN----   93 (262)
Q Consensus        33 ~~~~vlDvGcG~G~~~~~l~----~~--~~~--v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~~~~~----   93 (262)
                      ++.+|||||||+|.++..++    ..  ...  ++|+|+|+.|++.|++.       .++.+...+    ++++++    
T Consensus        52 ~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~----~~~~~~~~~~  127 (292)
T 2aot_A           52 SEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHK----ETSSEYQSRM  127 (292)
T ss_dssp             SEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEEC----SCHHHHHHHH
T ss_pred             CCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEe----cchhhhhhhh
Confidence            45689999999998776443    33  233  39999999999988752       234443222    233333    


Q ss_pred             --cCCCCceeeEEEccccccC-ChhHHHHHHHHhhcCCCeEEEEEecC
Q 037961           94 --VATQSSVDLVTIASALHWF-DLPQFYKQVKWVLKKPSGVIAAWTYT  138 (262)
Q Consensus        94 --~~~~~~~D~V~~~~~~~~~-d~~~~l~~~~r~Lk~pgG~l~i~~~~  138 (262)
                        ++++++||+|++..++||+ |+.+++++++|+|| |||+|++....
T Consensus       128 ~~~~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~Lk-pgG~l~i~~~~  174 (292)
T 2aot_A          128 LEKKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLG-TNAKMLIIVVS  174 (292)
T ss_dssp             HTTTCCCCEEEEEEESCGGGCSCHHHHHHHHHHTEE-EEEEEEEEEEC
T ss_pred             ccccCCCceeEEEEeeeeeecCCHHHHHHHHHHHcC-CCcEEEEEEec
Confidence              2568899999999999999 99999999999999 99999985433

>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}

Probab=99.79  E-value=8.7e-19  Score=148.89  Aligned_cols=129  Identities=22%  Similarity=0.317  Sum_probs=101.6

Q ss_pred             hhhHHHHHHHHhhCCCChHHH---------HHHHHhhC-CCCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHh
Q 037961            3 ELFIKQANLYAVARPNYPKEL---------FKLIASKT-PKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAI   72 (262)
Q Consensus         3 ~~F~~~a~~Y~~~rp~yp~~~---------~~~l~~~~-~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~   72 (262)
                      +.|+..+..|++....++...         +..++... +++.+|||+|||+|.++..+++.+.+|+|+|+|+.|++.|+
T Consensus        28 ~~fd~~a~~y~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~  107 (285)
T 4htf_A           28 RNFDDIAEKFSRNIYGTTKGQLRQAILWQDLDRVLAEMGPQKLRVLDAGGGEGQTAIKMAERGHQVILCDLSAQMIDRAK  107 (285)
T ss_dssp             ----CHHHHHHSCTTSCHHHHHHHHHHHHHHHHHHHHTCSSCCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred             cchhhHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhcCCCCCEEEEeCCcchHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence            578889999987766655422         22233333 45679999999999999999999999999999999999998


Q ss_pred             cC-------CCceEEeCCCCchhhhhhcc-CCCCceeeEEEccccccC-ChhHHHHHHHHhhcCCCeEEEEEecC
Q 037961           73 KL-------PNIRYQLTPTMSITELEQNV-ATQSSVDLVTIASALHWF-DLPQFYKQVKWVLKKPSGVIAAWTYT  138 (262)
Q Consensus        73 ~~-------~~~~~~~~~~~~~~~~~~~~-~~~~~~D~V~~~~~~~~~-d~~~~l~~~~r~Lk~pgG~l~i~~~~  138 (262)
                      +.       +++.+..++      +.+++ +++++||+|++..++||+ |+..+++++.++|| |||.+++....
T Consensus       108 ~~~~~~~~~~~v~~~~~d------~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~Lk-pgG~l~~~~~~  175 (285)
T 4htf_A          108 QAAEAKGVSDNMQFIHCA------AQDVASHLETPVDLILFHAVLEWVADPRSVLQTLWSVLR-PGGVLSLMFYN  175 (285)
T ss_dssp             HHHHC-CCGGGEEEEESC------GGGTGGGCSSCEEEEEEESCGGGCSCHHHHHHHHHHTEE-EEEEEEEEEEB
T ss_pred             HHHHhcCCCcceEEEEcC------HHHhhhhcCCCceEEEECchhhcccCHHHHHHHHHHHcC-CCeEEEEEEeC
Confidence            63       567788765      44444 567899999999999999 99999999999999 99999985544

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=99.79  E-value=1.6e-18  Score=146.21  Aligned_cols=109  Identities=21%  Similarity=0.230  Sum_probs=92.2

Q ss_pred             HHHHHHHhhC--CCCCeEEEEcCcccHhHHHHHhh-CCeEEEEcCCHHHHHHHhcC-------CCceEEeCCCCchhhhh
Q 037961           22 ELFKLIASKT--PKRNLAWDVGTRSGQAAASLAQI-YQHVIATDTSPKQLKFAIKL-------PNIRYQLTPTMSITELE   91 (262)
Q Consensus        22 ~~~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~~~   91 (262)
                      .+.+.+....  .++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.+++.       .++.+..++      +.
T Consensus        48 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d------~~  121 (273)
T 3bus_A           48 RLTDEMIALLDVRSGDRVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANARATAAGLANRVTFSYAD------AM  121 (273)
T ss_dssp             HHHHHHHHHSCCCTTCEEEEESCTTSHHHHHHHHHSCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECC------TT
T ss_pred             HHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECc------cc
Confidence            3455566655  37789999999999999999885 78999999999999988753       357888765      56


Q ss_pred             hccCCCCceeeEEEccccccC-ChhHHHHHHHHhhcCCCeEEEEEec
Q 037961           92 QNVATQSSVDLVTIASALHWF-DLPQFYKQVKWVLKKPSGVIAAWTY  137 (262)
Q Consensus        92 ~~~~~~~~~D~V~~~~~~~~~-d~~~~l~~~~r~Lk~pgG~l~i~~~  137 (262)
                      ++++++++||+|++..++||+ |+..+++++.++|| |||.+++...
T Consensus       122 ~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~-pgG~l~i~~~  167 (273)
T 3bus_A          122 DLPFEDASFDAVWALESLHHMPDRGRALREMARVLR-PGGTVAIADF  167 (273)
T ss_dssp             SCCSCTTCEEEEEEESCTTTSSCHHHHHHHHHTTEE-EEEEEEEEEE
T ss_pred             cCCCCCCCccEEEEechhhhCCCHHHHHHHHHHHcC-CCeEEEEEEe
Confidence            667788899999999999999 89999999999999 9999998544

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.78  E-value=1e-18  Score=141.02  Aligned_cols=127  Identities=11%  Similarity=0.161  Sum_probs=101.4

Q ss_pred             hhhHHHHHHHHhhCCCC------hHHHHHHHHhhCCCCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhc-CC
Q 037961            3 ELFIKQANLYAVARPNY------PKELFKLIASKTPKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIK-LP   75 (262)
Q Consensus         3 ~~F~~~a~~Y~~~rp~y------p~~~~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~-~~   75 (262)
                      +.|+..+..|+...+..      ...++..+...  .+.+|||+|||+|.++..+++.+.+|+|+|+|+.|++.+++ .+
T Consensus         7 ~~y~~~a~~y~~~~~~~~~~~~~~~~~l~~~~~~--~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~   84 (203)
T 3h2b_A            7 KAYSSPTFDAEALLGTVISAEDPDRVLIEPWATG--VDGVILDVGSGTGRWTGHLASLGHQIEGLEPATRLVELARQTHP   84 (203)
T ss_dssp             HHHHCTTTCHHHHTCSSCCTTCTTHHHHHHHHHH--CCSCEEEETCTTCHHHHHHHHTTCCEEEECCCHHHHHHHHHHCT
T ss_pred             HHHhhHHHHHHHHhhhhccccHHHHHHHHHHhcc--CCCeEEEecCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHhCC
Confidence            56777777776543221      12334444333  26789999999999999999999999999999999999986 47


Q ss_pred             CceEEeCCCCchhhhhhccCCCCceeeEEEccccccC---ChhHHHHHHHHhhcCCCeEEEEEecC
Q 037961           76 NIRYQLTPTMSITELEQNVATQSSVDLVTIASALHWF---DLPQFYKQVKWVLKKPSGVIAAWTYT  138 (262)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~~~~---d~~~~l~~~~r~Lk~pgG~l~i~~~~  138 (262)
                      ++.+..++      +.++++++++||+|++..++|++   ++..+++++.++|| |||.+++....
T Consensus        85 ~~~~~~~d------~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~-pgG~l~i~~~~  143 (203)
T 3h2b_A           85 SVTFHHGT------ITDLSDSPKRWAGLLAWYSLIHMGPGELPDALVALRMAVE-DGGGLLMSFFS  143 (203)
T ss_dssp             TSEEECCC------GGGGGGSCCCEEEEEEESSSTTCCTTTHHHHHHHHHHTEE-EEEEEEEEEEC
T ss_pred             CCeEEeCc------ccccccCCCCeEEEEehhhHhcCCHHHHHHHHHHHHHHcC-CCcEEEEEEcc
Confidence            88888765      56667778999999999999999   67889999999999 99999985544

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=99.77  E-value=8.4e-19  Score=142.05  Aligned_cols=107  Identities=11%  Similarity=-0.002  Sum_probs=84.9

Q ss_pred             HHHHHHHHhh-CCCCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhcC------------------CCceEEe
Q 037961           21 KELFKLIASK-TPKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKL------------------PNIRYQL   81 (262)
Q Consensus        21 ~~~~~~l~~~-~~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~------------------~~~~~~~   81 (262)
                      +.+.+++... .+++.+|||+|||+|..+..|++.|.+|+|+|+|+.|++.|++.                  .++++.+
T Consensus         9 ~~l~~~~~~l~~~~~~~vLD~GCG~G~~~~~la~~g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~   88 (203)
T 1pjz_A            9 KDLQQYWSSLNVVPGARVLVPLCGKSQDMSWLSGQGYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWC   88 (203)
T ss_dssp             HHHHHHHHHHCCCTTCEEEETTTCCSHHHHHHHHHCCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEE
T ss_pred             HHHHHHHHhcccCCCCEEEEeCCCCcHhHHHHHHCCCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEE
Confidence            3444554433 35778999999999999999999999999999999999998753                  3567776


Q ss_pred             CCCCchhhhhhccCCC-CceeeEEEccccccCCh---hHHHHHHHHhhcCCCeEEEE
Q 037961           82 TPTMSITELEQNVATQ-SSVDLVTIASALHWFDL---PQFYKQVKWVLKKPSGVIAA  134 (262)
Q Consensus        82 ~~~~~~~~~~~~~~~~-~~~D~V~~~~~~~~~d~---~~~l~~~~r~Lk~pgG~l~i  134 (262)
                      +|      +.++++++ ++||+|++..++|+++.   .++++++.|+|| |||++++
T Consensus        89 ~d------~~~l~~~~~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~Lk-pgG~~~l  138 (203)
T 1pjz_A           89 GD------FFALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMP-QACSGLL  138 (203)
T ss_dssp             EC------CSSSTHHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSC-SEEEEEE
T ss_pred             Cc------cccCCcccCCCEEEEEECcchhhCCHHHHHHHHHHHHHHcC-CCcEEEE
Confidence            55      55555444 78999999999999843   458999999999 9998544

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=99.77  E-value=3.9e-18  Score=145.64  Aligned_cols=99  Identities=22%  Similarity=0.223  Sum_probs=87.5

Q ss_pred             CCCCeEEEEcCcccHhHHHHHhh-CCeEEEEcCCHHHHHHHhcC-------CCceEEeCCCCchhhhhhccCCCCceeeE
Q 037961           32 PKRNLAWDVGTRSGQAAASLAQI-YQHVIATDTSPKQLKFAIKL-------PNIRYQLTPTMSITELEQNVATQSSVDLV  103 (262)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~D~V  103 (262)
                      +++.+|||+|||+|..+..+++. +.+|+|+|+|+.|++.+++.       .++.+..++      +.++++++++||+|
T Consensus        81 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d------~~~~~~~~~~fD~v  154 (297)
T 2o57_A           81 QRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGS------FLEIPCEDNSYDFI  154 (297)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECC------TTSCSSCTTCEEEE
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcC------cccCCCCCCCEeEE
Confidence            57789999999999999999987 88999999999999988753       468888765      56677788999999


Q ss_pred             EEccccccC-ChhHHHHHHHHhhcCCCeEEEEEec
Q 037961          104 TIASALHWF-DLPQFYKQVKWVLKKPSGVIAAWTY  137 (262)
Q Consensus       104 ~~~~~~~~~-d~~~~l~~~~r~Lk~pgG~l~i~~~  137 (262)
                      ++..++||+ ++..+++++.++|| |||.|++...
T Consensus       155 ~~~~~l~~~~~~~~~l~~~~~~Lk-pgG~l~~~~~  188 (297)
T 2o57_A          155 WSQDAFLHSPDKLKVFQECARVLK-PRGVMAITDP  188 (297)
T ss_dssp             EEESCGGGCSCHHHHHHHHHHHEE-EEEEEEEEEE
T ss_pred             EecchhhhcCCHHHHHHHHHHHcC-CCeEEEEEEe
Confidence            999999999 99999999999999 9999998543

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=99.76  E-value=3.2e-18  Score=139.69  Aligned_cols=125  Identities=16%  Similarity=0.161  Sum_probs=89.5

Q ss_pred             hhhHHHHHHHHhhC----CCChH------HHHHHHHhhCCCCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHh
Q 037961            3 ELFIKQANLYAVAR----PNYPK------ELFKLIASKTPKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAI   72 (262)
Q Consensus         3 ~~F~~~a~~Y~~~r----p~yp~------~~~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~   72 (262)
                      +.|+..++.|+...    +.|..      .+++.+..  .++.+|||+|||+|.++..+++.+.+|+|+|+|+.|++.++
T Consensus         7 ~~f~~~a~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~   84 (220)
T 3hnr_A            7 GLFDEWAHTYDSFVQGEDIQYKEVFAHYEDILEDVVN--KSFGNVLEFGVGTGNLTNKLLLAGRTVYGIEPSREMRMIAK   84 (220)
T ss_dssp             -----------------CCTTTTTTTTHHHHHHHHHH--TCCSEEEEECCTTSHHHHHHHHTTCEEEEECSCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhcchHhHHHHHHHHHHHHHHhhc--cCCCeEEEeCCCCCHHHHHHHhCCCeEEEEeCCHHHHHHHH
Confidence            45788888887643    22322      34444432  36778999999999999999999999999999999999998


Q ss_pred             cC-C-CceEEeCCCCchhhhhhccCCCCceeeEEEccccccC-ChhH--HHHHHHHhhcCCCeEEEEEec
Q 037961           73 KL-P-NIRYQLTPTMSITELEQNVATQSSVDLVTIASALHWF-DLPQ--FYKQVKWVLKKPSGVIAAWTY  137 (262)
Q Consensus        73 ~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~~~~-d~~~--~l~~~~r~Lk~pgG~l~i~~~  137 (262)
                      +. + ++.+..++      +.+++++ ++||+|++..++|++ ++..  +++++.++|| |||.+++...
T Consensus        85 ~~~~~~~~~~~~d------~~~~~~~-~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~Lk-pgG~l~i~~~  146 (220)
T 3hnr_A           85 EKLPKEFSITEGD------FLSFEVP-TSIDTIVSTYAFHHLTDDEKNVAIAKYSQLLN-KGGKIVFADT  146 (220)
T ss_dssp             HHSCTTCCEESCC------SSSCCCC-SCCSEEEEESCGGGSCHHHHHHHHHHHHHHSC-TTCEEEEEEE
T ss_pred             HhCCCceEEEeCC------hhhcCCC-CCeEEEEECcchhcCChHHHHHHHHHHHHhcC-CCCEEEEEec
Confidence            64 3 67888765      5556656 899999999999999 6665  9999999999 9999998653

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=99.76  E-value=1.8e-18  Score=140.56  Aligned_cols=115  Identities=18%  Similarity=0.232  Sum_probs=93.8

Q ss_pred             hCCCChHHHHHHHHhhCC-CCCeEEEEcCcccHhHHHHHhh-CCeEEEEcCCHHHHHHHhcC-------CCceEEeCCCC
Q 037961           15 ARPNYPKELFKLIASKTP-KRNLAWDVGTRSGQAAASLAQI-YQHVIATDTSPKQLKFAIKL-------PNIRYQLTPTM   85 (262)
Q Consensus        15 ~rp~yp~~~~~~l~~~~~-~~~~vlDvGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~   85 (262)
                      ++|.|+ .+.+.+....+ +..+|||+|||+|.++..+++. +.+|+|+|+|+.+++.+++.       .++.+..++  
T Consensus        25 ~~~~~~-~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d--  101 (219)
T 3dlc_A           25 FAPIYP-IIAENIINRFGITAGTCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGD--  101 (219)
T ss_dssp             TTTHHH-HHHHHHHHHHCCCEEEEEEETCTTSHHHHHHHHHSEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECB--
T ss_pred             hccccH-HHHHHHHHhcCCCCCEEEEECCCCCHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcC--
Confidence            345443 44555555432 3349999999999999999987 67999999999999998863       467888765  


Q ss_pred             chhhhhhccCCCCceeeEEEccccccC-ChhHHHHHHHHhhcCCCeEEEEEec
Q 037961           86 SITELEQNVATQSSVDLVTIASALHWF-DLPQFYKQVKWVLKKPSGVIAAWTY  137 (262)
Q Consensus        86 ~~~~~~~~~~~~~~~D~V~~~~~~~~~-d~~~~l~~~~r~Lk~pgG~l~i~~~  137 (262)
                          +.++++++++||+|+++.++||+ ++..+++++.++|| |||.+++...
T Consensus       102 ----~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~-pgG~l~~~~~  149 (219)
T 3dlc_A          102 ----VHNIPIEDNYADLIVSRGSVFFWEDVATAFREIYRILK-SGGKTYIGGG  149 (219)
T ss_dssp             ----TTBCSSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEE-EEEEEEEEEC
T ss_pred             ----HHHCCCCcccccEEEECchHhhccCHHHHHHHHHHhCC-CCCEEEEEec
Confidence                56667788999999999999999 99999999999999 9999998653

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}

Probab=99.76  E-value=1.2e-18  Score=141.35  Aligned_cols=126  Identities=17%  Similarity=0.174  Sum_probs=99.5

Q ss_pred             hhHHHHHHHHhhCCCChHH-----HHHHHHhhCCCCCeEEEEcCcccHhHHHHHhhCC-eEEEEcCCHHHHHHHhcC-CC
Q 037961            4 LFIKQANLYAVARPNYPKE-----LFKLIASKTPKRNLAWDVGTRSGQAAASLAQIYQ-HVIATDTSPKQLKFAIKL-PN   76 (262)
Q Consensus         4 ~F~~~a~~Y~~~rp~yp~~-----~~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~-~~   76 (262)
                      .|++.|+.|+.........     ..+.+....+++.+|||+|||+|..+..+   +. +++|+|+|+.|++.+++. ++
T Consensus         2 ~fd~~a~~y~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l---~~~~v~~vD~s~~~~~~a~~~~~~   78 (211)
T 2gs9_A            2 PFASLAEAYEAWYGTPLGAYVIAEEERALKGLLPPGESLLEVGAGTGYWLRRL---PYPQKVGVEPSEAMLAVGRRRAPE   78 (211)
T ss_dssp             TTTTTTTTTTGGGGSHHHHHHHHHHHHHHHTTCCCCSEEEEETCTTCHHHHHC---CCSEEEEECCCHHHHHHHHHHCTT
T ss_pred             chhhHHHHHHHHhcccchhhhHHHHHHHHHHhcCCCCeEEEECCCCCHhHHhC---CCCeEEEEeCCHHHHHHHHHhCCC
Confidence            3666677777653332221     23345555567889999999999999888   66 999999999999999864 67


Q ss_pred             ceEEeCCCCchhhhhhccCCCCceeeEEEccccccC-ChhHHHHHHHHhhcCCCeEEEEEecCC
Q 037961           77 IRYQLTPTMSITELEQNVATQSSVDLVTIASALHWF-DLPQFYKQVKWVLKKPSGVIAAWTYTM  139 (262)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~~~~-d~~~~l~~~~r~Lk~pgG~l~i~~~~~  139 (262)
                      +.+..++      +.++++++++||+|++..++||+ ++.++++++.++|| |||.+++.....
T Consensus        79 ~~~~~~d------~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~-pgG~l~i~~~~~  135 (211)
T 2gs9_A           79 ATWVRAW------GEALPFPGESFDVVLLFTTLEFVEDVERVLLEARRVLR-PGGALVVGVLEA  135 (211)
T ss_dssp             SEEECCC------TTSCCSCSSCEEEEEEESCTTTCSCHHHHHHHHHHHEE-EEEEEEEEEECT
T ss_pred             cEEEEcc------cccCCCCCCcEEEEEEcChhhhcCCHHHHHHHHHHHcC-CCCEEEEEecCC
Confidence            8887764      55667788899999999999999 89999999999999 999999865543

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=99.76  E-value=3.8e-18  Score=143.60  Aligned_cols=123  Identities=15%  Similarity=0.123  Sum_probs=98.7

Q ss_pred             HHHHHHHHhh---CCCChHHHHHHHHhhC---CCCCeEEEEcCcccHhHHHHHhhCC-eEEEEcCCHHHHHHHhcC----
Q 037961            6 IKQANLYAVA---RPNYPKELFKLIASKT---PKRNLAWDVGTRSGQAAASLAQIYQ-HVIATDTSPKQLKFAIKL----   74 (262)
Q Consensus         6 ~~~a~~Y~~~---rp~yp~~~~~~l~~~~---~~~~~vlDvGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~----   74 (262)
                      +..++.|+..   +|.++.. ...++..+   +++.+|||+|||+|.++..+++.+. +|+|+|+|+.|++.+++.    
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~-~~~~l~~l~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~   92 (267)
T 3kkz_A           14 NLICDFFSNMERQGPGSPEV-TLKALSFIDNLTEKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNRNARQS   92 (267)
T ss_dssp             HHHHHHHHTSSCSSSCCHHH-HHHHHTTCCCCCTTCEEEEETCTTCHHHHHHHTTCSSEEEEEESCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhhccccCCCCHHH-HHHHHHhcccCCCCCEEEEeCCCCCHHHHHHHhccCCEEEEEeCCHHHHHHHHHHHHHc
Confidence            3455666553   3555444 44444443   5778999999999999999998854 999999999999998753    


Q ss_pred             ---CCceEEeCCCCchhhhhhccCCCCceeeEEEccccccCChhHHHHHHHHhhcCCCeEEEEEe
Q 037961           75 ---PNIRYQLTPTMSITELEQNVATQSSVDLVTIASALHWFDLPQFYKQVKWVLKKPSGVIAAWT  136 (262)
Q Consensus        75 ---~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~  136 (262)
                         +++++..++      ++++++++++||+|++..++|++++..+++++.++|| |||.+++..
T Consensus        93 ~~~~~v~~~~~d------~~~~~~~~~~fD~i~~~~~~~~~~~~~~l~~~~~~Lk-pgG~l~~~~  150 (267)
T 3kkz_A           93 GLQNRVTGIVGS------MDDLPFRNEELDLIWSEGAIYNIGFERGLNEWRKYLK-KGGYLAVSE  150 (267)
T ss_dssp             TCTTTEEEEECC------TTSCCCCTTCEEEEEESSCGGGTCHHHHHHHHGGGEE-EEEEEEEEE
T ss_pred             CCCcCcEEEEcC------hhhCCCCCCCEEEEEEcCCceecCHHHHHHHHHHHcC-CCCEEEEEE
Confidence               458888765      5666777899999999999999999999999999999 999999844

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}

Probab=99.76  E-value=5.3e-18  Score=139.77  Aligned_cols=128  Identities=20%  Similarity=0.271  Sum_probs=102.1

Q ss_pred             hhhhHHHHHHHHhhC----CCChHHHHHHHHhhC---CCCCeEEEEcCcccHhHHHHHhh--CCeEEEEcCCHHHHHHHh
Q 037961            2 AELFIKQANLYAVAR----PNYPKELFKLIASKT---PKRNLAWDVGTRSGQAAASLAQI--YQHVIATDTSPKQLKFAI   72 (262)
Q Consensus         2 ~~~F~~~a~~Y~~~r----p~yp~~~~~~l~~~~---~~~~~vlDvGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~   72 (262)
                      .+.|+..++.|+..+    |.| ..+.+.+...+   +++.+|||+|||+|.++..+++.  +.+|+|+|+|+.|++.++
T Consensus         7 ~~~f~~~a~~y~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~   85 (234)
T 3dtn_A            7 KRKFDAVSGKYDEQRRKFIPCF-DDFYGVSVSIASVDTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAK   85 (234)
T ss_dssp             CCCCCHHHHHHHHHHHHHCTTH-HHHHHHHHHTCCCSCSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhHHHhCcCH-HHHHHHHHHHhhcCCCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHH
Confidence            457888888998743    334 44455555554   46789999999999999999998  779999999999999998


Q ss_pred             cC----CCceEEeCCCCchhhhhhccCCCCceeeEEEccccccCC-hh--HHHHHHHHhhcCCCeEEEEEecC
Q 037961           73 KL----PNIRYQLTPTMSITELEQNVATQSSVDLVTIASALHWFD-LP--QFYKQVKWVLKKPSGVIAAWTYT  138 (262)
Q Consensus        73 ~~----~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~~~~d-~~--~~l~~~~r~Lk~pgG~l~i~~~~  138 (262)
                      +.    .++.+..++      +.+++++ ++||+|++..++|+++ +.  .+++++.++|| |||.+++....
T Consensus        86 ~~~~~~~~~~~~~~d------~~~~~~~-~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~Lk-pgG~l~~~~~~  150 (234)
T 3dtn_A           86 NRFRGNLKVKYIEAD------YSKYDFE-EKYDMVVSALSIHHLEDEDKKELYKRSYSILK-ESGIFINADLV  150 (234)
T ss_dssp             HHTCSCTTEEEEESC------TTTCCCC-SCEEEEEEESCGGGSCHHHHHHHHHHHHHHEE-EEEEEEEEEEC
T ss_pred             HhhccCCCEEEEeCc------hhccCCC-CCceEEEEeCccccCCHHHHHHHHHHHHHhcC-CCcEEEEEEec
Confidence            63    367888765      5556655 8999999999999994 44  39999999999 99999986544

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*

Probab=99.75  E-value=2.2e-18  Score=144.69  Aligned_cols=124  Identities=19%  Similarity=0.254  Sum_probs=99.9

Q ss_pred             hhH-HHHHHHHhhC----CCCh---HHHHHHHHhhCCCCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhc-C
Q 037961            4 LFI-KQANLYAVAR----PNYP---KELFKLIASKTPKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIK-L   74 (262)
Q Consensus         4 ~F~-~~a~~Y~~~r----p~yp---~~~~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~-~   74 (262)
                      .|+ ..+..|+...    +.|.   ..+.+.+....+++.+|||+|||+|.++..+++.+.+|+|+|+|+.|++.|++ .
T Consensus        13 ~y~~~~a~~yd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~   92 (263)
T 3pfg_A           13 DYSGEIAELYDLVHQGKGKDYHREAADLAALVRRHSPKAASLLDVACGTGMHLRHLADSFGTVEGLELSADMLAIARRRN   92 (263)
T ss_dssp             SCCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHCTTCCEEEEETCTTSHHHHHHTTTSSEEEEEESCHHHHHHHHHHC
T ss_pred             ccchhHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhCCCCCcEEEeCCcCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhC
Confidence            355 6677776633    3332   34456666666778899999999999999999999999999999999999986 4


Q ss_pred             CCceEEeCCCCchhhhhhccCCCCceeeEEEcc-ccccC----ChhHHHHHHHHhhcCCCeEEEEE
Q 037961           75 PNIRYQLTPTMSITELEQNVATQSSVDLVTIAS-ALHWF----DLPQFYKQVKWVLKKPSGVIAAW  135 (262)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~-~~~~~----d~~~~l~~~~r~Lk~pgG~l~i~  135 (262)
                      +++.+..++      +.++++ +++||+|++.. ++||+    +...+++++.++|| |||.|++-
T Consensus        93 ~~~~~~~~d------~~~~~~-~~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~-pgG~l~i~  150 (263)
T 3pfg_A           93 PDAVLHHGD------MRDFSL-GRRFSAVTCMFSSIGHLAGQAELDAALERFAAHVL-PDGVVVVE  150 (263)
T ss_dssp             TTSEEEECC------TTTCCC-SCCEEEEEECTTGGGGSCHHHHHHHHHHHHHHTEE-EEEEEEEC
T ss_pred             CCCEEEECC------hHHCCc-cCCcCEEEEcCchhhhcCCHHHHHHHHHHHHHhcC-CCcEEEEE
Confidence            688888875      555554 68899999998 99998    34468999999999 99999994

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=99.75  E-value=2e-18  Score=140.40  Aligned_cols=101  Identities=20%  Similarity=0.194  Sum_probs=87.0

Q ss_pred             CCCCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhcC--CCceEEeCCCCchhhhhhccCCCCceeeEEEccc
Q 037961           31 TPKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKL--PNIRYQLTPTMSITELEQNVATQSSVDLVTIASA  108 (262)
Q Consensus        31 ~~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~  108 (262)
                      .+++.+|||+|||+|.++..+++.+.+|+|+|+|+.|++.+++.  +++.+..++      +.++ +++++||+|+++.+
T Consensus        44 ~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~d------~~~~-~~~~~~D~v~~~~~  116 (218)
T 3ou2_A           44 GNIRGDVLELASGTGYWTRHLSGLADRVTALDGSAEMIAEAGRHGLDNVEFRQQD------LFDW-TPDRQWDAVFFAHW  116 (218)
T ss_dssp             TTSCSEEEEESCTTSHHHHHHHHHSSEEEEEESCHHHHHHHGGGCCTTEEEEECC------TTSC-CCSSCEEEEEEESC
T ss_pred             CCCCCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHhcCCCCeEEEecc------cccC-CCCCceeEEEEech
Confidence            45667999999999999999999999999999999999999863  578888775      4444 57889999999999


Q ss_pred             cccCCh---hHHHHHHHHhhcCCCeEEEEEecCC
Q 037961          109 LHWFDL---PQFYKQVKWVLKKPSGVIAAWTYTM  139 (262)
Q Consensus       109 ~~~~d~---~~~l~~~~r~Lk~pgG~l~i~~~~~  139 (262)
                      +|+++.   ..+++++.++|| |||.+++.....
T Consensus       117 l~~~~~~~~~~~l~~~~~~L~-pgG~l~~~~~~~  149 (218)
T 3ou2_A          117 LAHVPDDRFEAFWESVRSAVA-PGGVVEFVDVTD  149 (218)
T ss_dssp             GGGSCHHHHHHHHHHHHHHEE-EEEEEEEEEECC
T ss_pred             hhcCCHHHHHHHHHHHHHHcC-CCeEEEEEeCCC
Confidence            999943   779999999999 999999866544

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.75  E-value=1e-17  Score=140.53  Aligned_cols=129  Identities=16%  Similarity=0.156  Sum_probs=102.0

Q ss_pred             hhhHHHHHHHHhhCCCC-----hHHHHHHHHhhCCCCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhcCCCc
Q 037961            3 ELFIKQANLYAVARPNY-----PKELFKLIASKTPKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKLPNI   77 (262)
Q Consensus         3 ~~F~~~a~~Y~~~rp~y-----p~~~~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~   77 (262)
                      ..|+..++.|++.-...     .+.+.+.+....+++.+|||+|||+|.++..+++.+.+|+|+|+|+.|++.+++....
T Consensus        19 ~~~~~~a~~Yd~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~   98 (260)
T 2avn_A           19 EFYDRIARAYDSMYETPKWKLYHRLIGSFLEEYLKNPCRVLDLGGGTGKWSLFLQERGFEVVLVDPSKEMLEVAREKGVK   98 (260)
T ss_dssp             HHHHHHHHHHGGGGCSHHHHHHHHHHHHHHHHHCCSCCEEEEETCTTCHHHHHHHTTTCEEEEEESCHHHHHHHHHHTCS
T ss_pred             chhhHHHHHHHHhccccchhHHHHHHHHHHHHhcCCCCeEEEeCCCcCHHHHHHHHcCCeEEEEeCCHHHHHHHHhhcCC
Confidence            56888999998864221     1234555666667788999999999999999999999999999999999999864322


Q ss_pred             eEEeCCCCchhhhhhccCCCCceeeEEEcc-ccccC-ChhHHHHHHHHhhcCCCeEEEEEecC
Q 037961           78 RYQLTPTMSITELEQNVATQSSVDLVTIAS-ALHWF-DLPQFYKQVKWVLKKPSGVIAAWTYT  138 (262)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~-~~~~~-d~~~~l~~~~r~Lk~pgG~l~i~~~~  138 (262)
                      .+..+      |+.++++++++||+|++.. ..|+. ++..+++++.++|| |||.+++...+
T Consensus        99 ~~~~~------d~~~~~~~~~~fD~v~~~~~~~~~~~~~~~~l~~~~~~Lk-pgG~l~~~~~~  154 (260)
T 2avn_A           99 NVVEA------KAEDLPFPSGAFEAVLALGDVLSYVENKDKAFSEIRRVLV-PDGLLIATVDN  154 (260)
T ss_dssp             CEEEC------CTTSCCSCTTCEEEEEECSSHHHHCSCHHHHHHHHHHHEE-EEEEEEEEEEB
T ss_pred             CEEEC------cHHHCCCCCCCEEEEEEcchhhhccccHHHHHHHHHHHcC-CCeEEEEEeCC
Confidence            35554      4666777788999999976 56676 88999999999999 99999985543

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=99.75  E-value=3.3e-18  Score=142.77  Aligned_cols=118  Identities=14%  Similarity=0.100  Sum_probs=96.4

Q ss_pred             HHHHhhCCCChHHHHHHHHhhC--CCCCeEEEEcCcccHhHHHHHhh-CCeEEEEcCCHHHHHHHhcC-------CCceE
Q 037961           10 NLYAVARPNYPKELFKLIASKT--PKRNLAWDVGTRSGQAAASLAQI-YQHVIATDTSPKQLKFAIKL-------PNIRY   79 (262)
Q Consensus        10 ~~Y~~~rp~yp~~~~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~-------~~~~~   79 (262)
                      ..+...+|.++. ..+.+....  +++.+|||+|||+|..+..+++. +.+|+|+|+|+.|++.+++.       .++.+
T Consensus        12 ~~~~~~~~~~~~-~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~   90 (256)
T 1nkv_A           12 SEHRIHNPFTEE-KYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHF   90 (256)
T ss_dssp             SSCSSSSSCCHH-HHHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEE
T ss_pred             CCccccCCCCHH-HHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEE
Confidence            344456777754 455555544  57789999999999999999986 77999999999999998752       36888


Q ss_pred             EeCCCCchhhhhhccCCCCceeeEEEccccccC-ChhHHHHHHHHhhcCCCeEEEEEe
Q 037961           80 QLTPTMSITELEQNVATQSSVDLVTIASALHWF-DLPQFYKQVKWVLKKPSGVIAAWT  136 (262)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~~~~-d~~~~l~~~~r~Lk~pgG~l~i~~  136 (262)
                      ..++      ++++++ +++||+|++..++|++ |+.++++++.++|| |||+|++..
T Consensus        91 ~~~d------~~~~~~-~~~fD~V~~~~~~~~~~~~~~~l~~~~r~Lk-pgG~l~~~~  140 (256)
T 1nkv_A           91 IHND------AAGYVA-NEKCDVAACVGATWIAGGFAGAEELLAQSLK-PGGIMLIGE  140 (256)
T ss_dssp             EESC------CTTCCC-SSCEEEEEEESCGGGTSSSHHHHHHHTTSEE-EEEEEEEEE
T ss_pred             EECC------hHhCCc-CCCCCEEEECCChHhcCCHHHHHHHHHHHcC-CCeEEEEec
Confidence            8765      555555 7899999999999999 89999999999999 999999843

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=99.75  E-value=8.8e-18  Score=140.27  Aligned_cols=121  Identities=17%  Similarity=0.171  Sum_probs=97.5

Q ss_pred             HHHHHHh---hCCCChHHHHHHHHhhC---CCCCeEEEEcCcccHhHHHHHhhCC-eEEEEcCCHHHHHHHhcC------
Q 037961            8 QANLYAV---ARPNYPKELFKLIASKT---PKRNLAWDVGTRSGQAAASLAQIYQ-HVIATDTSPKQLKFAIKL------   74 (262)
Q Consensus         8 ~a~~Y~~---~rp~yp~~~~~~l~~~~---~~~~~vlDvGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~------   74 (262)
                      ..+.|..   .+|.++ .....++..+   +++.+|||+|||+|..+..+++.+. +|+|+|+|+.+++.+++.      
T Consensus        16 ~~~~~~~~~~~~~~~~-~~~~~~l~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~   94 (257)
T 3f4k_A           16 ICNYFKLLKRQGPGSP-EATRKAVSFINELTDDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKANC   94 (257)
T ss_dssp             HHHHHTTSSCSSSCCH-HHHHHHHTTSCCCCTTCEEEEETCTTSHHHHHHHHHCCSEEEEEESCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHcCccccCCCCH-HHHHHHHHHHhcCCCCCeEEEeCCCCCHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHcCC
Confidence            4555554   335554 4444455443   4678999999999999999999865 999999999999998753      


Q ss_pred             -CCceEEeCCCCchhhhhhccCCCCceeeEEEccccccCChhHHHHHHHHhhcCCCeEEEEEe
Q 037961           75 -PNIRYQLTPTMSITELEQNVATQSSVDLVTIASALHWFDLPQFYKQVKWVLKKPSGVIAAWT  136 (262)
Q Consensus        75 -~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~  136 (262)
                       .++.+..++      +..+++++++||+|++..++|++++..+++++.++|| |||++++..
T Consensus        95 ~~~~~~~~~d------~~~~~~~~~~fD~v~~~~~l~~~~~~~~l~~~~~~L~-pgG~l~~~~  150 (257)
T 3f4k_A           95 ADRVKGITGS------MDNLPFQNEELDLIWSEGAIYNIGFERGMNEWSKYLK-KGGFIAVSE  150 (257)
T ss_dssp             TTTEEEEECC------TTSCSSCTTCEEEEEEESCSCCCCHHHHHHHHHTTEE-EEEEEEEEE
T ss_pred             CCceEEEECC------hhhCCCCCCCEEEEEecChHhhcCHHHHHHHHHHHcC-CCcEEEEEE
Confidence             237888765      5667778899999999999999999999999999999 999999854

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A

Probab=99.74  E-value=9.6e-18  Score=138.88  Aligned_cols=108  Identities=13%  Similarity=0.174  Sum_probs=90.1

Q ss_pred             HHHHHhhCCCCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhcC-C-CceEEeCCCCchhhhhhccCCCCcee
Q 037961           24 FKLIASKTPKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKL-P-NIRYQLTPTMSITELEQNVATQSSVD  101 (262)
Q Consensus        24 ~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~D  101 (262)
                      .+.+... .++.+|||+|||+|.++..+++.+.+|+|+|+|+.|++.|++. . ++.+..++      ++++ .++++||
T Consensus        34 ~~~l~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~v~~~~~d------~~~~-~~~~~fD  105 (250)
T 2p7i_A           34 VRAFTPF-FRPGNLLELGSFKGDFTSRLQEHFNDITCVEASEEAISHAQGRLKDGITYIHSR------FEDA-QLPRRYD  105 (250)
T ss_dssp             HHHHGGG-CCSSCEEEESCTTSHHHHHHTTTCSCEEEEESCHHHHHHHHHHSCSCEEEEESC------GGGC-CCSSCEE
T ss_pred             HHHHHhh-cCCCcEEEECCCCCHHHHHHHHhCCcEEEEeCCHHHHHHHHHhhhCCeEEEEcc------HHHc-CcCCccc
Confidence            3344333 3566799999999999999999999999999999999999864 2 78888765      4444 3678999


Q ss_pred             eEEEccccccC-ChhHHHHHHH-HhhcCCCeEEEEEecCCC
Q 037961          102 LVTIASALHWF-DLPQFYKQVK-WVLKKPSGVIAAWTYTMP  140 (262)
Q Consensus       102 ~V~~~~~~~~~-d~~~~l~~~~-r~Lk~pgG~l~i~~~~~~  140 (262)
                      +|++..++||+ |+..+++++. ++|| |||.+++......
T Consensus       106 ~v~~~~~l~~~~~~~~~l~~~~~~~Lk-pgG~l~i~~~~~~  145 (250)
T 2p7i_A          106 NIVLTHVLEHIDDPVALLKRINDDWLA-EGGRLFLVCPNAN  145 (250)
T ss_dssp             EEEEESCGGGCSSHHHHHHHHHHTTEE-EEEEEEEEEECTT
T ss_pred             EEEEhhHHHhhcCHHHHHHHHHHHhcC-CCCEEEEEcCChH
Confidence            99999999999 9999999999 9999 9999999665443

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=99.74  E-value=6.7e-18  Score=139.87  Aligned_cols=115  Identities=12%  Similarity=-0.006  Sum_probs=93.6

Q ss_pred             hCCCChHHHHHHHHhh---CCCCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhcCCCceEEeCCCCchhhhh
Q 037961           15 ARPNYPKELFKLIASK---TPKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKLPNIRYQLTPTMSITELE   91 (262)
Q Consensus        15 ~rp~yp~~~~~~l~~~---~~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~   91 (262)
                      +|+.. +.+.+.+...   .+++.+|||+|||+|.++..+++.+.+|+|+|+|+.|++.+++.  +.+..++      +.
T Consensus        21 ~~~~~-~~~~~~~~~~l~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~--~~~~~~d------~~   91 (240)
T 3dli_A           21 FRGSR-ELVKARLRRYIPYFKGCRRVLDIGCGRGEFLELCKEEGIESIGVDINEDMIKFCEGK--FNVVKSD------AI   91 (240)
T ss_dssp             HTCCH-HHHHHHHGGGGGGTTTCSCEEEETCTTTHHHHHHHHHTCCEEEECSCHHHHHHHHTT--SEEECSC------HH
T ss_pred             hCCCH-HHHHHHHHHHHhhhcCCCeEEEEeCCCCHHHHHHHhCCCcEEEEECCHHHHHHHHhh--cceeecc------HH
Confidence            34433 4555555444   35778999999999999999999999999999999999999976  7777665      44


Q ss_pred             hc--cCCCCceeeEEEccccccC-Ch--hHHHHHHHHhhcCCCeEEEEEecCC
Q 037961           92 QN--VATQSSVDLVTIASALHWF-DL--PQFYKQVKWVLKKPSGVIAAWTYTM  139 (262)
Q Consensus        92 ~~--~~~~~~~D~V~~~~~~~~~-d~--~~~l~~~~r~Lk~pgG~l~i~~~~~  139 (262)
                      +.  ++++++||+|++..++||+ ++  ..+++++.++|| |||.+++.....
T Consensus        92 ~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~l~~~~~~Lk-pgG~l~~~~~~~  143 (240)
T 3dli_A           92 EYLKSLPDKYLDGVMISHFVEHLDPERLFELLSLCYSKMK-YSSYIVIESPNP  143 (240)
T ss_dssp             HHHHTSCTTCBSEEEEESCGGGSCGGGHHHHHHHHHHHBC-TTCCEEEEEECT
T ss_pred             HHhhhcCCCCeeEEEECCchhhCCcHHHHHHHHHHHHHcC-CCcEEEEEeCCc
Confidence            43  6678999999999999999 44  689999999999 999999865543

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=99.74  E-value=8e-18  Score=140.37  Aligned_cols=105  Identities=22%  Similarity=0.261  Sum_probs=91.3

Q ss_pred             HHHHhhCC--CCCeEEEEcCcccHhHHHHHhhCC-eEEEEcCCHHHHHHHhcC---CCceEEeCCCCchhhhhhccCCCC
Q 037961           25 KLIASKTP--KRNLAWDVGTRSGQAAASLAQIYQ-HVIATDTSPKQLKFAIKL---PNIRYQLTPTMSITELEQNVATQS   98 (262)
Q Consensus        25 ~~l~~~~~--~~~~vlDvGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~~~~~~   98 (262)
                      ..+....+  ++.+|||+|||+|.++..+++.+. +|+|+|+|+.|++.+++.   .++.+..++      +.+++++++
T Consensus        34 ~~l~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d------~~~~~~~~~  107 (253)
T 3g5l_A           34 HELKKMLPDFNQKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEAKRKTTSPVVCYEQKA------IEDIAIEPD  107 (253)
T ss_dssp             HHHHTTCCCCTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHCCCTTEEEEECC------GGGCCCCTT
T ss_pred             HHHHHhhhccCCCEEEEECCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHhhccCCeEEEEcc------hhhCCCCCC
Confidence            34555554  678999999999999999999887 999999999999999864   577888764      666777889


Q ss_pred             ceeeEEEccccccC-ChhHHHHHHHHhhcCCCeEEEEEe
Q 037961           99 SVDLVTIASALHWF-DLPQFYKQVKWVLKKPSGVIAAWT  136 (262)
Q Consensus        99 ~~D~V~~~~~~~~~-d~~~~l~~~~r~Lk~pgG~l~i~~  136 (262)
                      +||+|++..++|++ ++..+++++.++|| |||.|++..
T Consensus       108 ~fD~v~~~~~l~~~~~~~~~l~~~~~~Lk-pgG~l~~~~  145 (253)
T 3g5l_A          108 AYNVVLSSLALHYIASFDDICKKVYINLK-SSGSFIFSV  145 (253)
T ss_dssp             CEEEEEEESCGGGCSCHHHHHHHHHHHEE-EEEEEEEEE
T ss_pred             CeEEEEEchhhhhhhhHHHHHHHHHHHcC-CCcEEEEEe
Confidence            99999999999999 99999999999999 999999844

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=99.74  E-value=1e-18  Score=142.56  Aligned_cols=127  Identities=19%  Similarity=0.213  Sum_probs=98.0

Q ss_pred             hhhHHHHHHHHhhCC----CChHHHHHHHHhhCCCCCeEEEEcCcccHhHHHHHhhC---CeEEEEcCCHHHHHHHhcC-
Q 037961            3 ELFIKQANLYAVARP----NYPKELFKLIASKTPKRNLAWDVGTRSGQAAASLAQIY---QHVIATDTSPKQLKFAIKL-   74 (262)
Q Consensus         3 ~~F~~~a~~Y~~~rp----~yp~~~~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~-   74 (262)
                      ..|+..+..|.....    ..+..+++.+  ..+++.+|||+|||+|.++..+++.+   .+|+|+|+|+.+++.+++. 
T Consensus         5 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~   82 (219)
T 3dh0_A            5 HKFDPSKIKKLDDPSRLELFDPEKVLKEF--GLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKV   82 (219)
T ss_dssp             -CCCGGGGGGTSCGGGGGTCCHHHHHHHH--TCCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHH
T ss_pred             ccCCHHHHhhhcCHhhccccCHHHHHHHh--CCCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHH
Confidence            456555544433211    1133444443  23567899999999999999999876   7999999999999998753 


Q ss_pred             -----CCceEEeCCCCchhhhhhccCCCCceeeEEEccccccC-ChhHHHHHHHHhhcCCCeEEEEEecC
Q 037961           75 -----PNIRYQLTPTMSITELEQNVATQSSVDLVTIASALHWF-DLPQFYKQVKWVLKKPSGVIAAWTYT  138 (262)
Q Consensus        75 -----~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~~~~-d~~~~l~~~~r~Lk~pgG~l~i~~~~  138 (262)
                           +++.+..++      +.++++++++||+|+++.++|++ ++..+++++.++|| |||.+++..+.
T Consensus        83 ~~~~~~~~~~~~~d------~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~Lk-pgG~l~i~~~~  145 (219)
T 3dh0_A           83 NKLGLKNVEVLKSE------ENKIPLPDNTVDFIFMAFTFHELSEPLKFLEELKRVAK-PFAYLAIIDWK  145 (219)
T ss_dssp             HHHTCTTEEEEECB------TTBCSSCSSCEEEEEEESCGGGCSSHHHHHHHHHHHEE-EEEEEEEEEEC
T ss_pred             HHcCCCcEEEEecc------cccCCCCCCCeeEEEeehhhhhcCCHHHHHHHHHHHhC-CCeEEEEEEec
Confidence                 468888765      56666788999999999999999 89999999999999 99999985543

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=99.74  E-value=9.8e-18  Score=138.67  Aligned_cols=97  Identities=26%  Similarity=0.252  Sum_probs=85.9

Q ss_pred             CCCeEEEEcCcccHhHHHHHhhCC-eEEEEcCCHHHHHHHhcC---CCceEEeCCCCchhhhhhccCCCCceeeEEEccc
Q 037961           33 KRNLAWDVGTRSGQAAASLAQIYQ-HVIATDTSPKQLKFAIKL---PNIRYQLTPTMSITELEQNVATQSSVDLVTIASA  108 (262)
Q Consensus        33 ~~~~vlDvGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~  108 (262)
                      ++.+|||+|||+|.++..+++.+. +|+|+|+|+.|++.+++.   .++.+..++      +..+++++++||+|++..+
T Consensus        43 ~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d------~~~~~~~~~~fD~v~~~~~  116 (243)
T 3bkw_A           43 GGLRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKMLARARAAGPDTGITYERAD------LDKLHLPQDSFDLAYSSLA  116 (243)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSCSSSEEEEECC------GGGCCCCTTCEEEEEEESC
T ss_pred             CCCEEEEEcCcCCHHHHHHHHCCCCeEEEEcCCHHHHHHHHHhcccCCceEEEcC------hhhccCCCCCceEEEEecc
Confidence            678999999999999999999888 999999999999999864   357777654      5566667889999999999


Q ss_pred             cccC-ChhHHHHHHHHhhcCCCeEEEEEe
Q 037961          109 LHWF-DLPQFYKQVKWVLKKPSGVIAAWT  136 (262)
Q Consensus       109 ~~~~-d~~~~l~~~~r~Lk~pgG~l~i~~  136 (262)
                      +|++ ++..+++++.++|+ |||.+++..
T Consensus       117 l~~~~~~~~~l~~~~~~L~-pgG~l~~~~  144 (243)
T 3bkw_A          117 LHYVEDVARLFRTVHQALS-PGGHFVFST  144 (243)
T ss_dssp             GGGCSCHHHHHHHHHHHEE-EEEEEEEEE
T ss_pred             ccccchHHHHHHHHHHhcC-cCcEEEEEe
Confidence            9999 89999999999999 999999854

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=99.74  E-value=2.6e-17  Score=134.42  Aligned_cols=130  Identities=17%  Similarity=0.185  Sum_probs=99.1

Q ss_pred             hhhHHHHHHHHhh-C-CCChH-------HHHHHHHhhCCCCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhc
Q 037961            3 ELFIKQANLYAVA-R-PNYPK-------ELFKLIASKTPKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIK   73 (262)
Q Consensus         3 ~~F~~~a~~Y~~~-r-p~yp~-------~~~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~   73 (262)
                      +.|+..++.|+.. + ..++.       .+++.+..  .++.+|||+|||+|.++..+++.+.+|+|+|+|+.|++.+++
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~   92 (227)
T 3e8s_A           15 DSWHQNAQAWIDAVRHGAIESRRQVTDQAILLAILG--RQPERVLDLGCGEGWLLRALADRGIEAVGVDGDRTLVDAARA   92 (227)
T ss_dssp             HHHHHHHHHHHHHHHHTCCHHHHHTHHHHHHHHHHH--TCCSEEEEETCTTCHHHHHHHTTTCEEEEEESCHHHHHHHHH
T ss_pred             HHHHhhHHHHHHHhcccccccccccccHHHHHHhhc--CCCCEEEEeCCCCCHHHHHHHHCCCEEEEEcCCHHHHHHHHH
Confidence            5678888888652 1 22322       22333322  355889999999999999999999999999999999999998


Q ss_pred             CCCceEEeCCCCchhhhhhccCC-CCceeeEEEccccccCChhHHHHHHHHhhcCCCeEEEEEecC
Q 037961           74 LPNIRYQLTPTMSITELEQNVAT-QSSVDLVTIASALHWFDLPQFYKQVKWVLKKPSGVIAAWTYT  138 (262)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~D~V~~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~~  138 (262)
                      ..++.+...+   ..+....+.. +++||+|+++.++|+-++..+++++.++|| |||.|++....
T Consensus        93 ~~~~~~~~~~---~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~l~~~~~~L~-pgG~l~~~~~~  154 (227)
T 3e8s_A           93 AGAGEVHLAS---YAQLAEAKVPVGKDYDLICANFALLHQDIIELLSAMRTLLV-PGGALVIQTLH  154 (227)
T ss_dssp             TCSSCEEECC---HHHHHTTCSCCCCCEEEEEEESCCCSSCCHHHHHHHHHTEE-EEEEEEEEECC
T ss_pred             hcccccchhh---HHhhcccccccCCCccEEEECchhhhhhHHHHHHHHHHHhC-CCeEEEEEecC
Confidence            8788888766   1222222433 455999999999994499999999999999 99999996554

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}

Probab=99.74  E-value=6.9e-17  Score=136.36  Aligned_cols=99  Identities=23%  Similarity=0.268  Sum_probs=87.5

Q ss_pred             CCCCeEEEEcCcccHhHHHHHhh--CCeEEEEcCCHHHHHHHhcC------CCceEEeCCCCchhhhhhccCCCCceeeE
Q 037961           32 PKRNLAWDVGTRSGQAAASLAQI--YQHVIATDTSPKQLKFAIKL------PNIRYQLTPTMSITELEQNVATQSSVDLV  103 (262)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~D~V  103 (262)
                      +++.+|||+|||+|.++..+++.  +.+|+|+|+|+.+++.+++.      +++.+..++      +..+++++++||+|
T Consensus        36 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d------~~~~~~~~~~fD~v  109 (276)
T 3mgg_A           36 PPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKNVKFLQAN------IFSLPFEDSSFDHI  109 (276)
T ss_dssp             CTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECC------GGGCCSCTTCEEEE
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEcc------cccCCCCCCCeeEE
Confidence            57889999999999999999987  67999999999999998753      568888764      66677788999999


Q ss_pred             EEccccccC-ChhHHHHHHHHhhcCCCeEEEEEec
Q 037961          104 TIASALHWF-DLPQFYKQVKWVLKKPSGVIAAWTY  137 (262)
Q Consensus       104 ~~~~~~~~~-d~~~~l~~~~r~Lk~pgG~l~i~~~  137 (262)
                      ++..++||+ |+..+++++.++|| |||.+++...
T Consensus       110 ~~~~~l~~~~~~~~~l~~~~~~L~-pgG~l~~~~~  143 (276)
T 3mgg_A          110 FVCFVLEHLQSPEEALKSLKKVLK-PGGTITVIEG  143 (276)
T ss_dssp             EEESCGGGCSCHHHHHHHHHHHEE-EEEEEEEEEE
T ss_pred             EEechhhhcCCHHHHHHHHHHHcC-CCcEEEEEEc
Confidence            999999999 99999999999999 9999998543

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}

Probab=99.73  E-value=2e-17  Score=136.73  Aligned_cols=124  Identities=18%  Similarity=0.226  Sum_probs=99.8

Q ss_pred             hhHHHHHHHHhhCCCC-hHHHHHHHHhhCCCCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhcC-----CCc
Q 037961            4 LFIKQANLYAVARPNY-PKELFKLIASKTPKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKL-----PNI   77 (262)
Q Consensus         4 ~F~~~a~~Y~~~rp~y-p~~~~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~-----~~~   77 (262)
                      .|++.|..|+...... -..+.+.+...++++.+|||+|||+|.++..+++. .+|+|+|+|+.|++.|++.     .++
T Consensus         3 ~y~~~a~~yd~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~   81 (243)
T 3d2l_A            3 AYEQFAYVYDELMQDVPYPEWVAWVLEQVEPGKRIADIGCGTGTATLLLADH-YEVTGVDLSEEMLEIAQEKAMETNRHV   81 (243)
T ss_dssp             ---CTTHHHHHHTTTCCHHHHHHHHHHHSCTTCEEEEESCTTCHHHHHHTTT-SEEEEEESCHHHHHHHHHHHHHTTCCC
T ss_pred             hHHHHHHHHHHhhhcccHHHHHHHHHHHcCCCCeEEEecCCCCHHHHHHhhC-CeEEEEECCHHHHHHHHHhhhhcCCce
Confidence            5788899998854432 35678888888888899999999999999999988 8999999999999998853     467


Q ss_pred             eEEeCCCCchhhhhhccCCCCceeeEEEcc-ccccC-C---hhHHHHHHHHhhcCCCeEEEEEe
Q 037961           78 RYQLTPTMSITELEQNVATQSSVDLVTIAS-ALHWF-D---LPQFYKQVKWVLKKPSGVIAAWT  136 (262)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~-~~~~~-d---~~~~l~~~~r~Lk~pgG~l~i~~  136 (262)
                      .+..++      +.+++++ ++||+|++.. ++||+ +   ...+++++.++|+ |||.+++-.
T Consensus        82 ~~~~~d------~~~~~~~-~~fD~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~-pgG~l~~~~  137 (243)
T 3d2l_A           82 DFWVQD------MRELELP-EPVDAITILCDSLNYLQTEADVKQTFDSAARLLT-DGGKLLFDV  137 (243)
T ss_dssp             EEEECC------GGGCCCS-SCEEEEEECTTGGGGCCSHHHHHHHHHHHHHHEE-EEEEEEEEE
T ss_pred             EEEEcC------hhhcCCC-CCcCEEEEeCCchhhcCCHHHHHHHHHHHHHhcC-CCeEEEEEc
Confidence            887765      5555544 7899999986 88887 3   4558999999999 999999843

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=99.73  E-value=1.3e-17  Score=139.55  Aligned_cols=107  Identities=9%  Similarity=-0.059  Sum_probs=85.2

Q ss_pred             HHHHHHHHhhC--CCCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhcC-----------------------C
Q 037961           21 KELFKLIASKT--PKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKL-----------------------P   75 (262)
Q Consensus        21 ~~~~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~-----------------------~   75 (262)
                      +.+.+++....  +++.+|||+|||+|..+..|++.|.+|+|+|+|+.|++.|++.                       .
T Consensus        54 ~~l~~~~~~~~~~~~~~~vLD~GCG~G~~~~~La~~G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (252)
T 2gb4_A           54 QLLKKHLDTFLKGQSGLRVFFPLCGKAIEMKWFADRGHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSG  133 (252)
T ss_dssp             HHHHHHHHHHHTTCCSCEEEETTCTTCTHHHHHHHTTCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTS
T ss_pred             HHHHHHHHHhccCCCCCeEEEeCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCC
Confidence            34455554332  4678999999999999999999999999999999999998642                       3


Q ss_pred             CceEEeCCCCchhhhhhccCCC-CceeeEEEccccccCC---hhHHHHHHHHhhcCCCeEEEE
Q 037961           76 NIRYQLTPTMSITELEQNVATQ-SSVDLVTIASALHWFD---LPQFYKQVKWVLKKPSGVIAA  134 (262)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~-~~~D~V~~~~~~~~~d---~~~~l~~~~r~Lk~pgG~l~i  134 (262)
                      ++++.++|      +.+++.++ ++||+|++..+++++.   ...+++++.++|| |||+|++
T Consensus       134 ~i~~~~~D------~~~l~~~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~Lk-pGG~l~l  189 (252)
T 2gb4_A          134 SISLYCCS------IFDLPRANIGKFDRIWDRGALVAINPGDHDRYADIILSLLR-KEFQYLV  189 (252)
T ss_dssp             SEEEEESC------TTTGGGGCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEE-EEEEEEE
T ss_pred             ceEEEECc------cccCCcccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcC-CCeEEEE
Confidence            56677665      55555543 7999999999999983   3458999999999 9999975

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.72  E-value=3.2e-17  Score=134.19  Aligned_cols=110  Identities=22%  Similarity=0.251  Sum_probs=92.4

Q ss_pred             HHHHHHHHhhCCCCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhcC-----CCceEEeCCCCchhhhhhccC
Q 037961           21 KELFKLIASKTPKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKL-----PNIRYQLTPTMSITELEQNVA   95 (262)
Q Consensus        21 ~~~~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~-----~~~~~~~~~~~~~~~~~~~~~   95 (262)
                      +.+.+.+....+++.+|||+|||+|.++..+++.+.+++|+|+|+.+++.+++.     .++++..+|      +.++++
T Consensus        26 ~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d------~~~~~~   99 (227)
T 1ve3_A           26 ETLEPLLMKYMKKRGKVLDLACGVGGFSFLLEDYGFEVVGVDISEDMIRKAREYAKSRESNVEFIVGD------ARKLSF   99 (227)
T ss_dssp             HHHHHHHHHSCCSCCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCCEEEECC------TTSCCS
T ss_pred             HHHHHHHHHhcCCCCeEEEEeccCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCCceEEECc------hhcCCC
Confidence            445666777777788999999999999999999988999999999999998753     678888765      445556


Q ss_pred             CCCceeeEEEccc--cccC-ChhHHHHHHHHhhcCCCeEEEEEec
Q 037961           96 TQSSVDLVTIASA--LHWF-DLPQFYKQVKWVLKKPSGVIAAWTY  137 (262)
Q Consensus        96 ~~~~~D~V~~~~~--~~~~-d~~~~l~~~~r~Lk~pgG~l~i~~~  137 (262)
                      ++++||+|+++.+  +++. ++..+++++.++|+ |||.+++...
T Consensus       100 ~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~-~gG~l~~~~~  143 (227)
T 1ve3_A          100 EDKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLK-PSGKFIMYFT  143 (227)
T ss_dssp             CTTCEEEEEEESCGGGCCHHHHHHHHHHHHHHEE-EEEEEEEEEE
T ss_pred             CCCcEEEEEEcCchHhCCHHHHHHHHHHHHHHcC-CCcEEEEEec
Confidence            7789999999999  5555 67889999999999 9999998554

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43

Probab=99.72  E-value=2.1e-17  Score=136.73  Aligned_cols=125  Identities=21%  Similarity=0.197  Sum_probs=99.0

Q ss_pred             hhHHHHHHHHhhCC--CChHHHHHHHHhh----CCCCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhcC---
Q 037961            4 LFIKQANLYAVARP--NYPKELFKLIASK----TPKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKL---   74 (262)
Q Consensus         4 ~F~~~a~~Y~~~rp--~yp~~~~~~l~~~----~~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~---   74 (262)
                      .|+..++.|+....  ..-..+.+.+...    .+++.+|||+|||+|.++..+++.+.+++|+|+|+.|++.+++.   
T Consensus         2 ~y~~~a~~yd~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~D~s~~~~~~a~~~~~~   81 (246)
T 1y8c_A            2 CYNKFAHIYDKLIRADVDYKKWSDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPKFKNTWAVDLSQEMLSEAENKFRS   81 (246)
T ss_dssp             CHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHTTTCCTTEEEEETCTTSTTHHHHGGGSSEEEEECSCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHccccccHHHHHHHHHHHHHHhCCCCCeEEEeCCCCCHHHHHHHHCCCcEEEEECCHHHHHHHHHHHhh
Confidence            58889999988654  2224444444333    24678999999999999999999999999999999999998853   


Q ss_pred             --CCceEEeCCCCchhhhhhccCCCCceeeEEEcc-ccccC----ChhHHHHHHHHhhcCCCeEEEEEe
Q 037961           75 --PNIRYQLTPTMSITELEQNVATQSSVDLVTIAS-ALHWF----DLPQFYKQVKWVLKKPSGVIAAWT  136 (262)
Q Consensus        75 --~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~-~~~~~----d~~~~l~~~~r~Lk~pgG~l~i~~  136 (262)
                        .++.+..++      +..++++ ++||+|++.. ++||+    ++..+++++.++|| |||.+++..
T Consensus        82 ~~~~~~~~~~d------~~~~~~~-~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~-pgG~l~~~~  142 (246)
T 1y8c_A           82 QGLKPRLACQD------ISNLNIN-RKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLK-EGGVFIFDI  142 (246)
T ss_dssp             TTCCCEEECCC------GGGCCCS-CCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEE-EEEEEEEEE
T ss_pred             cCCCeEEEecc------cccCCcc-CCceEEEEcCccccccCCHHHHHHHHHHHHHhcC-CCcEEEEEe
Confidence              267777664      5556555 7899999998 99998    35669999999999 999999843

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=99.72  E-value=5.1e-17  Score=136.01  Aligned_cols=110  Identities=17%  Similarity=0.229  Sum_probs=92.9

Q ss_pred             HHHHHHHHhhC--CCCCeEEEEcCcccHhHHHHHhh-CCeEEEEcCCHHHHHHHhcC----CCceEEeCCCCchhhhhhc
Q 037961           21 KELFKLIASKT--PKRNLAWDVGTRSGQAAASLAQI-YQHVIATDTSPKQLKFAIKL----PNIRYQLTPTMSITELEQN   93 (262)
Q Consensus        21 ~~~~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~----~~~~~~~~~~~~~~~~~~~   93 (262)
                      ....+.+....  +++.+|||+|||+|..+..+++. +.+|+|+|+|+.|++.+++.    +++.+..+|      +.++
T Consensus        41 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d------~~~~  114 (266)
T 3ujc_A           41 LEATKKILSDIELNENSKVLDIGSGLGGGCMYINEKYGAHTHGIDICSNIVNMANERVSGNNKIIFEAND------ILTK  114 (266)
T ss_dssp             HHHHHHHTTTCCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHTCCSCTTEEEEECC------TTTC
T ss_pred             HHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEECc------cccC
Confidence            34556666655  46789999999999999999987 88999999999999999865    577888765      5566


Q ss_pred             cCCCCceeeEEEccccccC---ChhHHHHHHHHhhcCCCeEEEEEec
Q 037961           94 VATQSSVDLVTIASALHWF---DLPQFYKQVKWVLKKPSGVIAAWTY  137 (262)
Q Consensus        94 ~~~~~~~D~V~~~~~~~~~---d~~~~l~~~~r~Lk~pgG~l~i~~~  137 (262)
                      ++++++||+|++..++||+   ++..+++++.++|| |||.+++...
T Consensus       115 ~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~-pgG~l~~~~~  160 (266)
T 3ujc_A          115 EFPENNFDLIYSRDAILALSLENKNKLFQKCYKWLK-PTGTLLITDY  160 (266)
T ss_dssp             CCCTTCEEEEEEESCGGGSCHHHHHHHHHHHHHHEE-EEEEEEEEEE
T ss_pred             CCCCCcEEEEeHHHHHHhcChHHHHHHHHHHHHHcC-CCCEEEEEEe
Confidence            7788999999999999998   67779999999999 9999998554

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=99.72  E-value=6.6e-17  Score=136.06  Aligned_cols=192  Identities=13%  Similarity=0.132  Sum_probs=124.2

Q ss_pred             HHHHHHHhhC-CCCCeEEEEcCcccHhHHHHHhh--CCeEEEEcCCHHHHHHHhcC-CCceEEeCCCCchhhhhhccCCC
Q 037961           22 ELFKLIASKT-PKRNLAWDVGTRSGQAAASLAQI--YQHVIATDTSPKQLKFAIKL-PNIRYQLTPTMSITELEQNVATQ   97 (262)
Q Consensus        22 ~~~~~l~~~~-~~~~~vlDvGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~-~~~~~~~~~~~~~~~~~~~~~~~   97 (262)
                      .+.+.+.... +++.+|||+|||+|.++..+++.  +.+|+|+|+|+.|++.|++. +++.+..++      ++.+++++
T Consensus        73 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d------~~~~~~~~  146 (269)
T 1p91_A           73 AIVAQLRERLDDKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQVTFCVAS------SHRLPFSD  146 (269)
T ss_dssp             HHHHHHHHHSCTTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCTTSEEEECC------TTSCSBCT
T ss_pred             HHHHHHHHhcCCCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhCCCcEEEEcc------hhhCCCCC
Confidence            3445555554 57789999999999999999987  67999999999999999864 677888765      55666778


Q ss_pred             CceeeEEEccccccCChhHHHHHHHHhhcCCCeEEEEEecCCCcccHHHHHhhcccccCCCCCCccccchhHHhcCCCCC
Q 037961           98 SSVDLVTIASALHWFDLPQFYKQVKWVLKKPSGVIAAWTYTMPEINESVGAVFKPFDTIDCNPFWAPQRKLVDKKYMSID  177 (262)
Q Consensus        98 ~~~D~V~~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (262)
                      ++||+|++..+      ..+++++.++|| |||++++.......+ .++...   .+. ....+. .      ......+
T Consensus       147 ~~fD~v~~~~~------~~~l~~~~~~L~-pgG~l~~~~~~~~~~-~~~~~~---~~~-~~~~~~-~------~~~~~~g  207 (269)
T 1p91_A          147 TSMDAIIRIYA------PCKAEELARVVK-PGGWVITATPGPRHL-MELKGL---IYN-EVHLHA-P------HAEQLEG  207 (269)
T ss_dssp             TCEEEEEEESC------CCCHHHHHHHEE-EEEEEEEEEECTTTT-HHHHTT---TCS-SCCCCC-C------CCCCCTT
T ss_pred             CceeEEEEeCC------hhhHHHHHHhcC-CCcEEEEEEcCHHHH-HHHHHH---hhc-cccccc-c------hhhHhcC
Confidence            89999998655      346899999999 999999866554332 222221   111 110100 0      1111112


Q ss_pred             CCCCCCCCCCCCCCCcceeEeEeecHHHHHHHHhhhhHHHHHHHhCCccchHHHHHHHHHHhccCCCCeEEEEEeEEEEE
Q 037961          178 FPFEPVDGYENTGPFDQFVVEKMMDLDDYFKFIRSCSAYQKAKDKGVELLTENVMEKFKAAWNEDGQSQKIARFRVYLRI  257 (262)
Q Consensus       178 ~~f~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  257 (262)
                        |+.++.       ..+.....++.+++.+++.+.+....        +.++.++.+.+.    +  ..++++.+.+.+
T Consensus       208 --f~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~l~~~----~--~~~~t~~~~i~~  264 (269)
T 1p91_A          208 --FTLQQS-------AELCYPMRLRGDEAVALLQMTPFAWR--------AKPEVWQTLAAK----E--VFDCQTDFNIHL  264 (269)
T ss_dssp             --EEEEEE-------EEEEEEEEEEHHHHHHHHHTSTTGGG--------CCHHHHHHHHHC----S--EEEEEEEEEEEE
T ss_pred             --CcEEEE-------EEEEEEEEcCHHHHHHHhccCCceEC--------CCHHHHHHHhcC----C--CceEEEEEEEEE
Confidence              332221       13445555677788888777554322        223234445432    2  457888888888


Q ss_pred             EEeC
Q 037961          258 GKVG  261 (262)
Q Consensus       258 ~rk~  261 (262)
                      ++|.
T Consensus       265 ~~k~  268 (269)
T 1p91_A          265 WQRS  268 (269)
T ss_dssp             EEEC
T ss_pred             EEec
Confidence            8874

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=99.72  E-value=7.4e-17  Score=132.48  Aligned_cols=111  Identities=21%  Similarity=0.279  Sum_probs=93.6

Q ss_pred             HHHHHHhhCCCCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhcC---C--------CceEEeCCCCchhhhh
Q 037961           23 LFKLIASKTPKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKL---P--------NIRYQLTPTMSITELE   91 (262)
Q Consensus        23 ~~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~---~--------~~~~~~~~~~~~~~~~   91 (262)
                      +...+....+++.+|||+|||+|.++..+++.+.+|+|+|+|+.+++.+++.   .        ++.+..++      +.
T Consensus        20 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d------~~   93 (235)
T 3sm3_A           20 LYPIIHNYLQEDDEILDIGCGSGKISLELASKGYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVEN------AS   93 (235)
T ss_dssp             CCTTHHHHCCTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECC------TT
T ss_pred             HHHHHHHhCCCCCeEEEECCCCCHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEec------cc
Confidence            3455666778889999999999999999999999999999999999999862   1        34666654      55


Q ss_pred             hccCCCCceeeEEEccccccC-Chh---HHHHHHHHhhcCCCeEEEEEecCCC
Q 037961           92 QNVATQSSVDLVTIASALHWF-DLP---QFYKQVKWVLKKPSGVIAAWTYTMP  140 (262)
Q Consensus        92 ~~~~~~~~~D~V~~~~~~~~~-d~~---~~l~~~~r~Lk~pgG~l~i~~~~~~  140 (262)
                      .+++++++||+|++..++|++ ++.   .+++++.++|| |||.+++..+...
T Consensus        94 ~~~~~~~~~D~v~~~~~l~~~~~~~~~~~~l~~~~~~L~-pgG~l~~~~~~~~  145 (235)
T 3sm3_A           94 SLSFHDSSFDFAVMQAFLTSVPDPKERSRIIKEVFRVLK-PGAYLYLVEFGQN  145 (235)
T ss_dssp             SCCSCTTCEEEEEEESCGGGCCCHHHHHHHHHHHHHHEE-EEEEEEEEEEBCC
T ss_pred             ccCCCCCceeEEEEcchhhcCCCHHHHHHHHHHHHHHcC-CCeEEEEEECCcc
Confidence            666778999999999999999 888   89999999999 9999999665543

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=99.72  E-value=5e-17  Score=139.96  Aligned_cols=106  Identities=14%  Similarity=0.142  Sum_probs=91.0

Q ss_pred             HHHHhhC---CCCCeEEEEcCcccHhHHHHHhh-CCeEEEEcCCHHHHHHHhcC-------CCceEEeCCCCchhhhhhc
Q 037961           25 KLIASKT---PKRNLAWDVGTRSGQAAASLAQI-YQHVIATDTSPKQLKFAIKL-------PNIRYQLTPTMSITELEQN   93 (262)
Q Consensus        25 ~~l~~~~---~~~~~vlDvGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~~~~~   93 (262)
                      +.+...+   +++.+|||+|||+|.++..+++. +.+|+|+|+|+.|++.|+++       .++++..++      +.++
T Consensus       106 ~~l~~~l~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d------~~~~  179 (312)
T 3vc1_A          106 EFLMDHLGQAGPDDTLVDAGCGRGGSMVMAHRRFGSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCN------MLDT  179 (312)
T ss_dssp             HHHHTTSCCCCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECC------TTSC
T ss_pred             HHHHHHhccCCCCCEEEEecCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECC------hhcC
Confidence            3455544   46789999999999999999998 89999999999999998853       368888765      5666


Q ss_pred             cCCCCceeeEEEccccccCChhHHHHHHHHhhcCCCeEEEEEec
Q 037961           94 VATQSSVDLVTIASALHWFDLPQFYKQVKWVLKKPSGVIAAWTY  137 (262)
Q Consensus        94 ~~~~~~~D~V~~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~  137 (262)
                      ++++++||+|++..++||+++..+++++.++|| |||+|++...
T Consensus       180 ~~~~~~fD~V~~~~~l~~~~~~~~l~~~~~~Lk-pgG~l~~~~~  222 (312)
T 3vc1_A          180 PFDKGAVTASWNNESTMYVDLHDLFSEHSRFLK-VGGRYVTITG  222 (312)
T ss_dssp             CCCTTCEEEEEEESCGGGSCHHHHHHHHHHHEE-EEEEEEEEEE
T ss_pred             CCCCCCEeEEEECCchhhCCHHHHHHHHHHHcC-CCcEEEEEEc
Confidence            778899999999999999999999999999999 9999998543

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.72  E-value=5e-17  Score=132.82  Aligned_cols=124  Identities=18%  Similarity=0.195  Sum_probs=100.6

Q ss_pred             ChhhhHHHHHHHHhhC----CCChHHHHHHHHhhCCCCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhcCCC
Q 037961            1 MAELFIKQANLYAVAR----PNYPKELFKLIASKTPKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKLPN   76 (262)
Q Consensus         1 ~~~~F~~~a~~Y~~~r----p~yp~~~~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~   76 (262)
                      |...|+..++.|++.-    +.|. ..++.+....+ +.+|||+|||+|.++..++..    +|+|+|+.|++.+++. +
T Consensus        13 ~~~~~~~~~~~y~~~~~~~~~~~~-~~~~~l~~~~~-~~~vLDiG~G~G~~~~~l~~~----~~vD~s~~~~~~a~~~-~   85 (219)
T 1vlm_A           13 MWHIFERFVNEYERWFLVHRFAYL-SELQAVKCLLP-EGRGVEIGVGTGRFAVPLKIK----IGVEPSERMAEIARKR-G   85 (219)
T ss_dssp             TTHHHHHTHHHHHHHHHHTHHHHH-HHHHHHHHHCC-SSCEEEETCTTSTTHHHHTCC----EEEESCHHHHHHHHHT-T
T ss_pred             heeecchhHHHHHHHHHhcchhHH-HHHHHHHHhCC-CCcEEEeCCCCCHHHHHHHHH----hccCCCHHHHHHHHhc-C
Confidence            5677888888887642    2232 23445555555 788999999999999998776    9999999999999877 7


Q ss_pred             ceEEeCCCCchhhhhhccCCCCceeeEEEccccccC-ChhHHHHHHHHhhcCCCeEEEEEecC
Q 037961           77 IRYQLTPTMSITELEQNVATQSSVDLVTIASALHWF-DLPQFYKQVKWVLKKPSGVIAAWTYT  138 (262)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~~~~-d~~~~l~~~~r~Lk~pgG~l~i~~~~  138 (262)
                      +.+..++      +.++++++++||+|++..++|++ ++..+++++.++|+ |||.+++....
T Consensus        86 ~~~~~~d------~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~-pgG~l~i~~~~  141 (219)
T 1vlm_A           86 VFVLKGT------AENLPLKDESFDFALMVTTICFVDDPERALKEAYRILK-KGGYLIVGIVD  141 (219)
T ss_dssp             CEEEECB------TTBCCSCTTCEEEEEEESCGGGSSCHHHHHHHHHHHEE-EEEEEEEEEEC
T ss_pred             CEEEEcc------cccCCCCCCCeeEEEEcchHhhccCHHHHHHHHHHHcC-CCcEEEEEEeC
Confidence            8887764      55566778899999999999999 89999999999999 99999985544

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A

Probab=99.72  E-value=2.5e-17  Score=134.28  Aligned_cols=112  Identities=14%  Similarity=0.144  Sum_probs=88.8

Q ss_pred             CChHHHHHHHHhhC--CCCCeEEEEcCcccHhHHHHHhhC--CeEEEEcCCHHHHHHHhcC-----------CCceEEeC
Q 037961           18 NYPKELFKLIASKT--PKRNLAWDVGTRSGQAAASLAQIY--QHVIATDTSPKQLKFAIKL-----------PNIRYQLT   82 (262)
Q Consensus        18 ~yp~~~~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~-----------~~~~~~~~   82 (262)
                      .+.++..+.+...+  .++.+|||+|||+|.++..+++.+  .+|+|+|+|+.|++.+++.           .++.+..+
T Consensus        12 ~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~   91 (217)
T 3jwh_A           12 SLNQQRMNGVVAALKQSNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQG   91 (217)
T ss_dssp             CHHHHHHHHHHHHHHHTTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEEC
T ss_pred             CHHHHHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeC
Confidence            34455566665554  366799999999999999999875  6999999999999999853           16888877


Q ss_pred             CCCchhhhhhccCCCCceeeEEEccccccCC-h--hHHHHHHHHhhcCCCeEEEEEe
Q 037961           83 PTMSITELEQNVATQSSVDLVTIASALHWFD-L--PQFYKQVKWVLKKPSGVIAAWT  136 (262)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~D~V~~~~~~~~~d-~--~~~l~~~~r~Lk~pgG~l~i~~  136 (262)
                      +      +...+.++++||+|++..++||++ +  ..+++++.++|| |||.+++..
T Consensus        92 d------~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~Lk-pgG~li~~~  141 (217)
T 3jwh_A           92 A------LTYQDKRFHGYDAATVIEVIEHLDLSRLGAFERVLFEFAQ-PKIVIVTTP  141 (217)
T ss_dssp             C------TTSCCGGGCSCSEEEEESCGGGCCHHHHHHHHHHHHTTTC-CSEEEEEEE
T ss_pred             C------cccccccCCCcCEEeeHHHHHcCCHHHHHHHHHHHHHHcC-CCEEEEEcc
Confidence            5      444444567999999999999994 4  579999999999 999777633

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*

Probab=99.71  E-value=3.4e-17  Score=133.23  Aligned_cols=98  Identities=19%  Similarity=0.271  Sum_probs=84.2

Q ss_pred             CCCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhcC----CCceEEeCCCCchhhhhhccCCCCceeeEEEcc
Q 037961           32 PKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKL----PNIRYQLTPTMSITELEQNVATQSSVDLVTIAS  107 (262)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~  107 (262)
                      .++.+|||+|||+|.++..+++.+.+|+|+|+|+.|++.+++.    +++.+..++      +.+++ ++++||+|+++.
T Consensus        50 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d------~~~~~-~~~~fD~v~~~~  122 (216)
T 3ofk_A           50 GAVSNGLEIGCAAGAFTEKLAPHCKRLTVIDVMPRAIGRACQRTKRWSHISWAATD------ILQFS-TAELFDLIVVAE  122 (216)
T ss_dssp             SSEEEEEEECCTTSHHHHHHGGGEEEEEEEESCHHHHHHHHHHTTTCSSEEEEECC------TTTCC-CSCCEEEEEEES
T ss_pred             CCCCcEEEEcCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHhcccCCCeEEEEcc------hhhCC-CCCCccEEEEcc
Confidence            3567899999999999999999999999999999999999863    467888765      45554 578999999999


Q ss_pred             ccccC-Ch---hHHHHHHHHhhcCCCeEEEEEec
Q 037961          108 ALHWF-DL---PQFYKQVKWVLKKPSGVIAAWTY  137 (262)
Q Consensus       108 ~~~~~-d~---~~~l~~~~r~Lk~pgG~l~i~~~  137 (262)
                      ++||+ ++   .++++++.++|| |||.|++...
T Consensus       123 ~l~~~~~~~~~~~~l~~~~~~L~-pgG~l~~~~~  155 (216)
T 3ofk_A          123 VLYYLEDMTQMRTAIDNMVKMLA-PGGHLVFGSA  155 (216)
T ss_dssp             CGGGSSSHHHHHHHHHHHHHTEE-EEEEEEEEEE
T ss_pred             HHHhCCCHHHHHHHHHHHHHHcC-CCCEEEEEec
Confidence            99999 66   457999999999 9999998543

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*

Probab=99.71  E-value=2.6e-17  Score=140.84  Aligned_cols=128  Identities=15%  Similarity=0.121  Sum_probs=90.0

Q ss_pred             hhHHHH-HHHHhhCCCC-hHHHHHHHHhhC-CCCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhcC------
Q 037961            4 LFIKQA-NLYAVARPNY-PKELFKLIASKT-PKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKL------   74 (262)
Q Consensus         4 ~F~~~a-~~Y~~~rp~y-p~~~~~~l~~~~-~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~------   74 (262)
                      .|+..+ ..|+...+.. +......+...+ ++..+|||||||+|.++..+++.+.+|+|+|+|+.|++.|++.      
T Consensus        50 ~y~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~  129 (299)
T 3g2m_A           50 FYDEGAADTYRDLIQDADGTSEAREFATRTGPVSGPVLELAAGMGRLTFPFLDLGWEVTALELSTSVLAAFRKRLAEAPA  129 (299)
T ss_dssp             CC--------------CCCHHHHHHHHHHHCCCCSCEEEETCTTTTTHHHHHTTTCCEEEEESCHHHHHHHHHHHHTSCH
T ss_pred             HHhHHHHHHHHHHhcccCccHHHHHHHHhhCCCCCcEEEEeccCCHHHHHHHHcCCeEEEEECCHHHHHHHHHHHhhccc
Confidence            455544 6677665521 244444444443 4456899999999999999999999999999999999999853      


Q ss_pred             ---CCceEEeCCCCchhhhhhccCCCCceeeEEE-ccccccCCh---hHHHHHHHHhhcCCCeEEEEEecCC
Q 037961           75 ---PNIRYQLTPTMSITELEQNVATQSSVDLVTI-ASALHWFDL---PQFYKQVKWVLKKPSGVIAAWTYTM  139 (262)
Q Consensus        75 ---~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~-~~~~~~~d~---~~~l~~~~r~Lk~pgG~l~i~~~~~  139 (262)
                         .++.++++|      +.++++ +++||+|++ ...+|++++   ..+++++.++|| |||+|++.....
T Consensus       130 ~~~~~v~~~~~d------~~~~~~-~~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~-pgG~l~~~~~~~  193 (299)
T 3g2m_A          130 DVRDRCTLVQGD------MSAFAL-DKRFGTVVISSGSINELDEADRRGLYASVREHLE-PGGKFLLSLAMS  193 (299)
T ss_dssp             HHHTTEEEEECB------TTBCCC-SCCEEEEEECHHHHTTSCHHHHHHHHHHHHHHEE-EEEEEEEEEECC
T ss_pred             ccccceEEEeCc------hhcCCc-CCCcCEEEECCcccccCCHHHHHHHHHHHHHHcC-CCcEEEEEeecC
Confidence               468888865      555555 688999985 577888864   679999999999 999999855543

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A

Probab=99.71  E-value=7.3e-17  Score=142.88  Aligned_cols=104  Identities=21%  Similarity=0.257  Sum_probs=86.4

Q ss_pred             CCCCeEEEEcCcccHhHHHHHhh---CCeEEEEcCCHHHHHHHhcC--------------CCceEEeCCCCchhhhhhcc
Q 037961           32 PKRNLAWDVGTRSGQAAASLAQI---YQHVIATDTSPKQLKFAIKL--------------PNIRYQLTPTMSITELEQNV   94 (262)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~--------------~~~~~~~~~~~~~~~~~~~~   94 (262)
                      .++.+|||+|||+|..+..+++.   +.+|+|+|+|+.|++.|+++              +++.++.++.....+....+
T Consensus        82 ~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~~  161 (383)
T 4fsd_A           82 LEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEG  161 (383)
T ss_dssp             GTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSCC
T ss_pred             CCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccCC
Confidence            36789999999999999999885   45999999999999999864              58888887621111111127


Q ss_pred             CCCCceeeEEEccccccC-ChhHHHHHHHHhhcCCCeEEEEEe
Q 037961           95 ATQSSVDLVTIASALHWF-DLPQFYKQVKWVLKKPSGVIAAWT  136 (262)
Q Consensus        95 ~~~~~~D~V~~~~~~~~~-d~~~~l~~~~r~Lk~pgG~l~i~~  136 (262)
                      +++++||+|+++.++||+ |+..+++++.++|| |||.|++..
T Consensus       162 ~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~Lk-pgG~l~i~~  203 (383)
T 4fsd_A          162 VPDSSVDIVISNCVCNLSTNKLALFKEIHRVLR-DGGELYFSD  203 (383)
T ss_dssp             CCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEE-EEEEEEEEE
T ss_pred             CCCCCEEEEEEccchhcCCCHHHHHHHHHHHcC-CCCEEEEEE
Confidence            788999999999999999 99999999999999 999999854

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*

Probab=99.71  E-value=7.8e-17  Score=137.20  Aligned_cols=111  Identities=17%  Similarity=0.134  Sum_probs=90.5

Q ss_pred             HHHHHHHHhhC--CCCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhcC----------CCceEEeCCCCchh
Q 037961           21 KELFKLIASKT--PKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKL----------PNIRYQLTPTMSIT   88 (262)
Q Consensus        21 ~~~~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~----------~~~~~~~~~~~~~~   88 (262)
                      +.+.+++...+  .++.+|||+|||+|..+..+++.+.+|+|+|+|+.|++.|++.          .++.+..++     
T Consensus        43 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d-----  117 (293)
T 3thr_A           43 AEYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEAN-----  117 (293)
T ss_dssp             HHHHHHHHHHHHHTTCCEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECC-----
T ss_pred             HHHHHHHHHHhcccCCCEEEEecCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHhhhhcccccccceeeEeecC-----
Confidence            55555555544  3667899999999999999999999999999999999998742          356666654     


Q ss_pred             hhhhcc---CCCCceeeEEEc-cccccC-C-------hhHHHHHHHHhhcCCCeEEEEEecC
Q 037961           89 ELEQNV---ATQSSVDLVTIA-SALHWF-D-------LPQFYKQVKWVLKKPSGVIAAWTYT  138 (262)
Q Consensus        89 ~~~~~~---~~~~~~D~V~~~-~~~~~~-d-------~~~~l~~~~r~Lk~pgG~l~i~~~~  138 (262)
                       +..++   +++++||+|++. .++||+ +       +.++++++.++|| |||.|++....
T Consensus       118 -~~~~~~~~~~~~~fD~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~Lk-pgG~l~~~~~~  177 (293)
T 3thr_A          118 -WLTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVR-PGGLLVIDHRN  177 (293)
T ss_dssp             -GGGHHHHSCCTTCEEEEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEE-EEEEEEEEEEC
T ss_pred             -hhhCccccccCCCeEEEEEcChHHhhcCccccCHHHHHHHHHHHHHHcC-CCeEEEEEeCC
Confidence             44444   678899999998 899998 8       8889999999999 99999985433

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=99.70  E-value=6.4e-17  Score=131.08  Aligned_cols=114  Identities=18%  Similarity=0.163  Sum_probs=95.3

Q ss_pred             hHHHHHHHHhhCCCCCeEEEEcCcccHhHHHHHhhCC-eEEEEcCCHHHHHHHhcC----CCceEEeCCCCchhhhhhcc
Q 037961           20 PKELFKLIASKTPKRNLAWDVGTRSGQAAASLAQIYQ-HVIATDTSPKQLKFAIKL----PNIRYQLTPTMSITELEQNV   94 (262)
Q Consensus        20 p~~~~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~----~~~~~~~~~~~~~~~~~~~~   94 (262)
                      +..+.+.+....+++.+|||+|||+|.++..+++.+. +|+|+|+|+.+++.+++.    +++.+..++      +.+++
T Consensus        29 ~~~~~~~l~~~~~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~i~~~~~d------~~~~~  102 (215)
T 2pxx_A           29 FSSFRALLEPELRPEDRILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAAMQACYAHVPQLRWETMD------VRKLD  102 (215)
T ss_dssp             HHHHHHHHGGGCCTTCCEEEETCTTCSHHHHHHHTTCCCEEEEESCHHHHHHHHHHTTTCTTCEEEECC------TTSCC
T ss_pred             HHHHHHHHHHhcCCCCeEEEECCCCcHHHHHHHHcCCCcEEEEeCCHHHHHHHHHhcccCCCcEEEEcc------hhcCC
Confidence            3567777888888889999999999999999999876 899999999999999863    567888765      45556


Q ss_pred             CCCCceeeEEEccccccC----------------ChhHHHHHHHHhhcCCCeEEEEEecCCC
Q 037961           95 ATQSSVDLVTIASALHWF----------------DLPQFYKQVKWVLKKPSGVIAAWTYTMP  140 (262)
Q Consensus        95 ~~~~~~D~V~~~~~~~~~----------------d~~~~l~~~~r~Lk~pgG~l~i~~~~~~  140 (262)
                      +++++||+|+++.+++++                +...+++++.++|| |||.+++..+..+
T Consensus       103 ~~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk-pgG~li~~~~~~~  163 (215)
T 2pxx_A          103 FPSASFDVVLEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLV-PGGRFISMTSAAP  163 (215)
T ss_dssp             SCSSCEEEEEEESHHHHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEE-EEEEEEEEESCCH
T ss_pred             CCCCcccEEEECcchhhhccccccccccccchhHHHHHHHHHHHHhCc-CCCEEEEEeCCCc
Confidence            678899999998888644                34779999999999 9999999777654

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*

Probab=99.70  E-value=4.1e-17  Score=138.94  Aligned_cols=129  Identities=11%  Similarity=0.081  Sum_probs=87.3

Q ss_pred             hhhHHHHHHHHhhCCCCh----HHHHHH----H-HhhCCCCCeEEEEcCcccHhHHHHHhhCC-eEEEEcCCHHHHHHHh
Q 037961            3 ELFIKQANLYAVARPNYP----KELFKL----I-ASKTPKRNLAWDVGTRSGQAAASLAQIYQ-HVIATDTSPKQLKFAI   72 (262)
Q Consensus         3 ~~F~~~a~~Y~~~rp~yp----~~~~~~----l-~~~~~~~~~vlDvGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~   72 (262)
                      +.|+..+..|...|...+    ..+..+    + ....+++.+|||+|||+|..+..+++.+. +|+|+|+|+.|++.|+
T Consensus        25 ~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~  104 (298)
T 1ri5_A           25 EHYNSIRERGRESRQRSKTINIRNANNFIKACLIRLYTKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDAR  104 (298)
T ss_dssp             ----------------CCSHHHHHHHHHHHHHHHHHHCCTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHH
T ss_pred             HHHHHhhcccccccccchhhhHHHHHHHHHHHHHHHhCCCCCeEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHH
Confidence            456666666655554321    122222    2 23446888999999999999999988765 9999999999999988


Q ss_pred             cC-------CCceEEeCCCCchhhhhhccC-CCCceeeEEEcccccc----C-ChhHHHHHHHHhhcCCCeEEEEEecC
Q 037961           73 KL-------PNIRYQLTPTMSITELEQNVA-TQSSVDLVTIASALHW----F-DLPQFYKQVKWVLKKPSGVIAAWTYT  138 (262)
Q Consensus        73 ~~-------~~~~~~~~~~~~~~~~~~~~~-~~~~~D~V~~~~~~~~----~-d~~~~l~~~~r~Lk~pgG~l~i~~~~  138 (262)
                      +.       .++.+..++      +.+.++ ++++||+|++..++|+    . ++..+++++.++|| |||.|++....
T Consensus       105 ~~~~~~~~~~~v~~~~~d------~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~Lk-pgG~l~~~~~~  176 (298)
T 1ri5_A          105 VRARNMKRRFKVFFRAQD------SYGRHMDLGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLR-PGGYFIMTVPS  176 (298)
T ss_dssp             HHHHTSCCSSEEEEEESC------TTTSCCCCSSCEEEEEEESCGGGGGSSHHHHHHHHHHHHHTEE-EEEEEEEEEEC
T ss_pred             HHHHhcCCCccEEEEECC------ccccccCCCCCcCEEEECchhhhhcCCHHHHHHHHHHHHHhcC-CCCEEEEEECC
Confidence            53       246777765      455555 5789999999999998    3 56779999999999 99999986544

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A

Probab=99.69  E-value=1.2e-16  Score=135.87  Aligned_cols=112  Identities=13%  Similarity=0.125  Sum_probs=93.0

Q ss_pred             ChHHHHHHHHhhC---CCCCeEEEEcCcccHhHHHHHhh---CCeEEEEcCCHHHHHHHhcC-----CCceEEeCCCCch
Q 037961           19 YPKELFKLIASKT---PKRNLAWDVGTRSGQAAASLAQI---YQHVIATDTSPKQLKFAIKL-----PNIRYQLTPTMSI   87 (262)
Q Consensus        19 yp~~~~~~l~~~~---~~~~~vlDvGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~-----~~~~~~~~~~~~~   87 (262)
                      |.+.+++.+....   .++.+|||+|||+|.++..+++.   +.+|+|+|+|+.|++.+++.     .++++..+|    
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~v~~~~~d----   80 (284)
T 3gu3_A            5 YNDDYVSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGD----   80 (284)
T ss_dssp             CCHHHHHHHHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSSEEEEEESC----
T ss_pred             cchHHHHHHHHHHhccCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEEcc----
Confidence            4456666666554   47789999999999999999986   57999999999999988753     367788765    


Q ss_pred             hhhhhccCCCCceeeEEEccccccC-ChhHHHHHHHHhhcCCCeEEEEEecC
Q 037961           88 TELEQNVATQSSVDLVTIASALHWF-DLPQFYKQVKWVLKKPSGVIAAWTYT  138 (262)
Q Consensus        88 ~~~~~~~~~~~~~D~V~~~~~~~~~-d~~~~l~~~~r~Lk~pgG~l~i~~~~  138 (262)
                        +.++++ +++||+|++..++|++ |+..+++++.++|| |||.+++....
T Consensus        81 --~~~~~~-~~~fD~v~~~~~l~~~~~~~~~l~~~~~~Lk-pgG~l~~~~~~  128 (284)
T 3gu3_A           81 --ATEIEL-NDKYDIAICHAFLLHMTTPETMLQKMIHSVK-KGGKIICFEPH  128 (284)
T ss_dssp             --TTTCCC-SSCEEEEEEESCGGGCSSHHHHHHHHHHTEE-EEEEEEEEECC
T ss_pred             --hhhcCc-CCCeeEEEECChhhcCCCHHHHHHHHHHHcC-CCCEEEEEecc
Confidence              555665 4689999999999999 99999999999999 99999985543

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=99.69  E-value=7.1e-17  Score=126.48  Aligned_cols=105  Identities=21%  Similarity=0.260  Sum_probs=89.1

Q ss_pred             HHHHHHHhhCCCCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhc-CCCceEEeCCCCchhhhhhccCCCCce
Q 037961           22 ELFKLIASKTPKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIK-LPNIRYQLTPTMSITELEQNVATQSSV  100 (262)
Q Consensus        22 ~~~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (262)
                      .+++.+.  .+++.+|||+|||+|.++..+++.+.+|+|+|+|+.+++.+++ .+++++..++         .++++++|
T Consensus         8 ~~~~~~~--~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~v~~~~~d---------~~~~~~~~   76 (170)
T 3i9f_A            8 EYLPNIF--EGKKGVIVDYGCGNGFYCKYLLEFATKLYCIDINVIALKEVKEKFDSVITLSDP---------KEIPDNSV   76 (170)
T ss_dssp             TTHHHHH--SSCCEEEEEETCTTCTTHHHHHTTEEEEEEECSCHHHHHHHHHHCTTSEEESSG---------GGSCTTCE
T ss_pred             HHHHhcC--cCCCCeEEEECCCCCHHHHHHHhhcCeEEEEeCCHHHHHHHHHhCCCcEEEeCC---------CCCCCCce
Confidence            3444442  3567789999999999999999987799999999999999986 4778887652         55678899


Q ss_pred             eeEEEccccccC-ChhHHHHHHHHhhcCCCeEEEEEecC
Q 037961          101 DLVTIASALHWF-DLPQFYKQVKWVLKKPSGVIAAWTYT  138 (262)
Q Consensus       101 D~V~~~~~~~~~-d~~~~l~~~~r~Lk~pgG~l~i~~~~  138 (262)
                      |+|+++.++|++ ++..+++++.++|| |||.+++..+.
T Consensus        77 D~v~~~~~l~~~~~~~~~l~~~~~~L~-pgG~l~~~~~~  114 (170)
T 3i9f_A           77 DFILFANSFHDMDDKQHVISEVKRILK-DDGRVIIIDWR  114 (170)
T ss_dssp             EEEEEESCSTTCSCHHHHHHHHHHHEE-EEEEEEEEEEC
T ss_pred             EEEEEccchhcccCHHHHHHHHHHhcC-CCCEEEEEEcC
Confidence            999999999999 99999999999999 99999985543

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=99.69  E-value=2.2e-16  Score=135.26  Aligned_cols=105  Identities=20%  Similarity=0.172  Sum_probs=87.3

Q ss_pred             HHHHHhhC--CCCCeEEEEcCcccHhHHHHHhh-CCeEEEEcCCHHHHHHHhcC-------CCceEEeCCCCchhhhhhc
Q 037961           24 FKLIASKT--PKRNLAWDVGTRSGQAAASLAQI-YQHVIATDTSPKQLKFAIKL-------PNIRYQLTPTMSITELEQN   93 (262)
Q Consensus        24 ~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~~~~~   93 (262)
                      ++.+....  +++.+|||+|||+|.++..+++. +.+|+|+|+|+.|++.|++.       .++.+..+|      +.++
T Consensus        61 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d------~~~~  134 (302)
T 3hem_A           61 RKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQG------WEEF  134 (302)
T ss_dssp             HHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECC------GGGC
T ss_pred             HHHHHHHcCCCCcCEEEEeeccCcHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECC------HHHc
Confidence            44455554  47789999999999999999987 89999999999999999853       267788765      4443


Q ss_pred             cCCCCceeeEEEccccccC-Ch---------hHHHHHHHHhhcCCCeEEEEEecC
Q 037961           94 VATQSSVDLVTIASALHWF-DL---------PQFYKQVKWVLKKPSGVIAAWTYT  138 (262)
Q Consensus        94 ~~~~~~~D~V~~~~~~~~~-d~---------~~~l~~~~r~Lk~pgG~l~i~~~~  138 (262)
                         +++||+|++..++|++ |+         ..+++++.++|| |||++++....
T Consensus       135 ---~~~fD~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~Lk-pgG~l~i~~~~  185 (302)
T 3hem_A          135 ---DEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTP-DDGRMLLHTIT  185 (302)
T ss_dssp             ---CCCCSEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSC-TTCEEEEEEEE
T ss_pred             ---CCCccEEEEcchHHhcCccccccchhHHHHHHHHHHHhcC-CCcEEEEEEEe
Confidence               6889999999999999 66         589999999999 99999985544

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42

Probab=99.69  E-value=1.6e-16  Score=132.32  Aligned_cols=126  Identities=17%  Similarity=0.211  Sum_probs=96.9

Q ss_pred             hhHHHHHHHHhhCCCChHH-------------HHHHHHhhC--CCCCeEEEEcCcccHhHHHHHhh-CCeEEEEcCCHHH
Q 037961            4 LFIKQANLYAVARPNYPKE-------------LFKLIASKT--PKRNLAWDVGTRSGQAAASLAQI-YQHVIATDTSPKQ   67 (262)
Q Consensus         4 ~F~~~a~~Y~~~rp~yp~~-------------~~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~-~~~v~~vD~s~~~   67 (262)
                      .|+..++.|+...+.|...             ....++..+  .++.+|||+|||+|.++..++.. ..+|+++|+|+.|
T Consensus        49 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~  128 (254)
T 1xtp_A           49 WYGKALEYWRTVPATVSGVLGGMDHVHDVDIEGSRNFIASLPGHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHM  128 (254)
T ss_dssp             HHHHHHHHHHTSCSSHHHHTTTCGGGHHHHHHHHHHHHHTSTTCCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHH
T ss_pred             hhhhhhhHHhcCCccccceecCcCccCHHHHHHHHHHHHhhcccCCCEEEEECCCcCHHHHHHHHhhcCEEEEEeCCHHH
Confidence            3556777777744433211             123333333  36789999999999999999887 4579999999999


Q ss_pred             HHHHhcC----CCceEEeCCCCchhhhhhccCCCCceeeEEEccccccCC---hhHHHHHHHHhhcCCCeEEEEEe
Q 037961           68 LKFAIKL----PNIRYQLTPTMSITELEQNVATQSSVDLVTIASALHWFD---LPQFYKQVKWVLKKPSGVIAAWT  136 (262)
Q Consensus        68 ~~~a~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~~~~d---~~~~l~~~~r~Lk~pgG~l~i~~  136 (262)
                      ++.+++.    .++.+..++      +..+++++++||+|++..++|++.   +..+++++.++|| |||.|++..
T Consensus       129 ~~~a~~~~~~~~~~~~~~~d------~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~Lk-pgG~l~i~~  197 (254)
T 1xtp_A          129 LEEAKRELAGMPVGKFILAS------METATLPPNTYDLIVIQWTAIYLTDADFVKFFKHCQQALT-PNGYIFFKE  197 (254)
T ss_dssp             HHHHHHHTTTSSEEEEEESC------GGGCCCCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEE-EEEEEEEEE
T ss_pred             HHHHHHHhccCCceEEEEcc------HHHCCCCCCCeEEEEEcchhhhCCHHHHHHHHHHHHHhcC-CCeEEEEEe
Confidence            9999864    457777654      666677788999999999999993   5679999999999 999999854

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}

Probab=99.69  E-value=8.8e-17  Score=132.57  Aligned_cols=125  Identities=17%  Similarity=0.262  Sum_probs=97.0

Q ss_pred             hhH-HHHHHHHhhC----CCChH---HHHHHHHhhCCCCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhcC-
Q 037961            4 LFI-KQANLYAVAR----PNYPK---ELFKLIASKTPKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKL-   74 (262)
Q Consensus         4 ~F~-~~a~~Y~~~r----p~yp~---~~~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~-   74 (262)
                      .|+ ..++.|+..-    +.|..   .+.+.+....+++.+|||+|||+|..+..+++.+.+|+|+|+|+.|++.+++. 
T Consensus         3 ~y~~~~a~~yd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~   82 (239)
T 3bxo_A            3 MYEVDHADVYDLFYLGRGKDYAAEASDIADLVRSRTPEASSLLDVACGTGTHLEHFTKEFGDTAGLELSEDMLTHARKRL   82 (239)
T ss_dssp             -CCCCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCTTCCEEEEETCTTSHHHHHHHHHHSEEEEEESCHHHHHHHHHHC
T ss_pred             cccchhHHHHHHHhhccHhhHHHHHHHHHHHHHHhcCCCCeEEEecccCCHHHHHHHHhCCcEEEEeCCHHHHHHHHHhC
Confidence            355 5667776642    44432   34555666667788999999999999999999888999999999999999864 


Q ss_pred             CCceEEeCCCCchhhhhhccCCCCceeeEEEc-cccccC-Ch---hHHHHHHHHhhcCCCeEEEEEe
Q 037961           75 PNIRYQLTPTMSITELEQNVATQSSVDLVTIA-SALHWF-DL---PQFYKQVKWVLKKPSGVIAAWT  136 (262)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~-~~~~~~-d~---~~~l~~~~r~Lk~pgG~l~i~~  136 (262)
                      +++.+..++      +.++++ +++||+|+|. .++||+ ++   ..+++++.++|| |||.+++..
T Consensus        83 ~~~~~~~~d------~~~~~~-~~~~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~-pgG~l~~~~  141 (239)
T 3bxo_A           83 PDATLHQGD------MRDFRL-GRKFSAVVSMFSSVGYLKTTEELGAAVASFAEHLE-PGGVVVVEP  141 (239)
T ss_dssp             TTCEEEECC------TTTCCC-SSCEEEEEECTTGGGGCCSHHHHHHHHHHHHHTEE-EEEEEEECC
T ss_pred             CCCEEEECC------HHHccc-CCCCcEEEEcCchHhhcCCHHHHHHHHHHHHHhcC-CCeEEEEEe
Confidence            678888765      444554 6789999964 488988 43   569999999999 999999843

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42

Probab=99.69  E-value=1.2e-16  Score=132.38  Aligned_cols=98  Identities=21%  Similarity=0.243  Sum_probs=82.3

Q ss_pred             CCCeEEEEcCcccHhHHHHHhh-CCeEEEEcCCHHHHHHHhcC------CCceEEeCCCCchhhhhhccCCCCceeeEEE
Q 037961           33 KRNLAWDVGTRSGQAAASLAQI-YQHVIATDTSPKQLKFAIKL------PNIRYQLTPTMSITELEQNVATQSSVDLVTI  105 (262)
Q Consensus        33 ~~~~vlDvGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~  105 (262)
                      ++.+|||+|||+|.++..+++. +.+|+|+|+|+.|++.+++.      .++.+..++      +..+++++++||+|++
T Consensus        79 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d------~~~~~~~~~~fD~v~~  152 (241)
T 2ex4_A           79 GTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCG------LQDFTPEPDSYDVIWI  152 (241)
T ss_dssp             CCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECC------GGGCCCCSSCEEEEEE
T ss_pred             CCCEEEEECCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcC------hhhcCCCCCCEEEEEE
Confidence            5789999999999999999887 45999999999999999863      135666654      6666667789999999


Q ss_pred             ccccccC-Chh--HHHHHHHHhhcCCCeEEEEEec
Q 037961          106 ASALHWF-DLP--QFYKQVKWVLKKPSGVIAAWTY  137 (262)
Q Consensus       106 ~~~~~~~-d~~--~~l~~~~r~Lk~pgG~l~i~~~  137 (262)
                      ..++|++ ++.  .+++++.++|| |||.|++...
T Consensus       153 ~~~l~~~~~~~~~~~l~~~~~~Lk-pgG~l~i~~~  186 (241)
T 2ex4_A          153 QWVIGHLTDQHLAEFLRRCKGSLR-PNGIIVIKDN  186 (241)
T ss_dssp             ESCGGGSCHHHHHHHHHHHHHHEE-EEEEEEEEEE
T ss_pred             cchhhhCCHHHHHHHHHHHHHhcC-CCeEEEEEEc
Confidence            9999999 543  79999999999 9999998543

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*

Probab=99.68  E-value=5.6e-17  Score=139.65  Aligned_cols=110  Identities=14%  Similarity=0.161  Sum_probs=85.0

Q ss_pred             HHHHHHHhhCCCCCeEEEEcCcccHhHHHHHhh-CCeEEEEcCCHHHHHHHhcC-------------CCceEEeCCCCch
Q 037961           22 ELFKLIASKTPKRNLAWDVGTRSGQAAASLAQI-YQHVIATDTSPKQLKFAIKL-------------PNIRYQLTPTMSI   87 (262)
Q Consensus        22 ~~~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~-------------~~~~~~~~~~~~~   87 (262)
                      .+.+.+....+++.+|||+|||+|..+..+++. +.+|+|+|+|+.|++.+++.             .++.+.++|    
T Consensus        23 ~~~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D----   98 (313)
T 3bgv_A           23 EFLEKVRQKKKRDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITAD----   98 (313)
T ss_dssp             HHHHHHHHTC--CCEEEEETCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECC----
T ss_pred             HHHHHhhhccCCCCEEEEECCCCcHHHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEec----
Confidence            334444444457789999999999999999875 67999999999999998753             256777766    


Q ss_pred             hhhhhcc----C--CCCceeeEEEccccccC--Ch---hHHHHHHHHhhcCCCeEEEEEecC
Q 037961           88 TELEQNV----A--TQSSVDLVTIASALHWF--DL---PQFYKQVKWVLKKPSGVIAAWTYT  138 (262)
Q Consensus        88 ~~~~~~~----~--~~~~~D~V~~~~~~~~~--d~---~~~l~~~~r~Lk~pgG~l~i~~~~  138 (262)
                        ++..+    +  ++++||+|+++.++||+  +.   ..+++++.++|| |||.|++....
T Consensus        99 --~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~Lk-pgG~li~~~~~  157 (313)
T 3bgv_A           99 --SSKELLIDKFRDPQMCFDICSCQFVCHYSFESYEQADMMLRNACERLS-PGGYFIGTTPN  157 (313)
T ss_dssp             --TTTSCSTTTCSSTTCCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEE-EEEEEEEEEEC
T ss_pred             --ccccchhhhcccCCCCEEEEEEecchhhccCCHHHHHHHHHHHHHHhC-CCcEEEEecCC
Confidence              33332    3  34589999999999998  43   579999999999 99999986544

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=99.68  E-value=3.1e-17  Score=140.09  Aligned_cols=101  Identities=17%  Similarity=0.247  Sum_probs=82.1

Q ss_pred             CCCeEEEEcCcccHhHHHHHhh--CCeEEEEcCCHHHHHHHhcC------------------------------------
Q 037961           33 KRNLAWDVGTRSGQAAASLAQI--YQHVIATDTSPKQLKFAIKL------------------------------------   74 (262)
Q Consensus        33 ~~~~vlDvGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~------------------------------------   74 (262)
                      ++.+|||||||+|.++..++..  +.+|+|+|+|+.|++.|++.                                    
T Consensus        46 ~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  125 (292)
T 3g07_A           46 RGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRSC  125 (292)
T ss_dssp             TTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC-----------------------------------
T ss_pred             CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhcccccccccccccccccccccccccccc
Confidence            5789999999999999999997  57999999999999999864                                    


Q ss_pred             ----------------------------CCceEEeCCCCchhhhhhccCCCCceeeEEEccccccC-------ChhHHHH
Q 037961           75 ----------------------------PNIRYQLTPTMSITELEQNVATQSSVDLVTIASALHWF-------DLPQFYK  119 (262)
Q Consensus        75 ----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~~~~-------d~~~~l~  119 (262)
                                                  .++.+..++.... ..+..++.+++||+|+|..+++|+       +..++++
T Consensus       126 ~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~-~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~l~  204 (292)
T 3g07_A          126 FPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLD-RDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMFR  204 (292)
T ss_dssp             ----------------CCSSTTCCSSTTTTEEEEECCCCCS-SHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHHHHH
T ss_pred             ccchhhhccCccccccccccccccccccccceEEecccccC-ccccccccCCCcCEEEEChHHHHhhhcCCHHHHHHHHH
Confidence                                        2577777661110 011123467899999999999888       6778999


Q ss_pred             HHHHhhcCCCeEEEEE
Q 037961          120 QVKWVLKKPSGVIAAW  135 (262)
Q Consensus       120 ~~~r~Lk~pgG~l~i~  135 (262)
                      +++++|+ |||.|++-
T Consensus       205 ~~~~~Lk-pGG~lil~  219 (292)
T 3g07_A          205 RIYRHLR-PGGILVLE  219 (292)
T ss_dssp             HHHHHEE-EEEEEEEE
T ss_pred             HHHHHhC-CCcEEEEe
Confidence            9999999 99999983

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=99.68  E-value=2.1e-16  Score=125.50  Aligned_cols=106  Identities=17%  Similarity=0.107  Sum_probs=81.2

Q ss_pred             HHHhhCCCCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhcC------CCceEEeCCCCchhhhhhcc-CCCC
Q 037961           26 LIASKTPKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKL------PNIRYQLTPTMSITELEQNV-ATQS   98 (262)
Q Consensus        26 ~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~~~~~~-~~~~   98 (262)
                      .+....+++.+|||+|||+|..+..+++.+.+|+|+|+|+.|++.|+++      .++++..++      ++.++ +.++
T Consensus        15 ~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~------~~~l~~~~~~   88 (185)
T 3mti_A           15 FLAEVLDDESIVVDATMGNGNDTAFLAGLSKKVYAFDVQEQALGKTSQRLSDLGIENTELILDG------HENLDHYVRE   88 (185)
T ss_dssp             HHHTTCCTTCEEEESCCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHHHHHHTCCCEEEEESC------GGGGGGTCCS
T ss_pred             HHHHhCCCCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCc------HHHHHhhccC
Confidence            3445567889999999999999999999999999999999999998753      578888754      33321 3467


Q ss_pred             ceeeEEEcc-cccc-------C--ChhHHHHHHHHhhcCCCeEEEEEecC
Q 037961           99 SVDLVTIAS-ALHW-------F--DLPQFYKQVKWVLKKPSGVIAAWTYT  138 (262)
Q Consensus        99 ~~D~V~~~~-~~~~-------~--d~~~~l~~~~r~Lk~pgG~l~i~~~~  138 (262)
                      +||+|+++. .+++       .  +...+++++.++|| |||.+++..+.
T Consensus        89 ~fD~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk-pgG~l~i~~~~  137 (185)
T 3mti_A           89 PIRAAIFNLGYLPSADKSVITKPHTTLEAIEKILDRLE-VGGRLAIMIYY  137 (185)
T ss_dssp             CEEEEEEEEC-----------CHHHHHHHHHHHHHHEE-EEEEEEEEEC-
T ss_pred             CcCEEEEeCCCCCCcchhcccChhhHHHHHHHHHHhcC-CCcEEEEEEeC
Confidence            899999873 3332       1  34468899999999 99999986654

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A

Probab=99.68  E-value=1.4e-16  Score=129.97  Aligned_cols=107  Identities=18%  Similarity=0.139  Sum_probs=85.6

Q ss_pred             HHHHHHHhhC--CCCCeEEEEcCcccHhHHHHHhhC--CeEEEEcCCHHHHHHHhcC-----------CCceEEeCCCCc
Q 037961           22 ELFKLIASKT--PKRNLAWDVGTRSGQAAASLAQIY--QHVIATDTSPKQLKFAIKL-----------PNIRYQLTPTMS   86 (262)
Q Consensus        22 ~~~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~-----------~~~~~~~~~~~~   86 (262)
                      ...+.+...+  .++.+|||+|||+|.++..+++.+  .+|+|+|+|+.|++.+++.           .++++..++   
T Consensus        16 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d---   92 (219)
T 3jwg_A           16 QRLGTVVAVLKSVNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSS---   92 (219)
T ss_dssp             HHHHHHHHHHHHTTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECC---
T ss_pred             HHHHHHHHHHhhcCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCc---
Confidence            3344444433  466799999999999999999876  6999999999999999863           178888775   


Q ss_pred             hhhhhhccCCCCceeeEEEccccccCC-h--hHHHHHHHHhhcCCCeEEEEE
Q 037961           87 ITELEQNVATQSSVDLVTIASALHWFD-L--PQFYKQVKWVLKKPSGVIAAW  135 (262)
Q Consensus        87 ~~~~~~~~~~~~~~D~V~~~~~~~~~d-~--~~~l~~~~r~Lk~pgG~l~i~  135 (262)
                         +...+.++++||+|++..++|+++ +  .++++++.++|| |||.++..
T Consensus        93 ---~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~Lk-pgG~~i~~  140 (219)
T 3jwg_A           93 ---LVYRDKRFSGYDAATVIEVIEHLDENRLQAFEKVLFEFTR-PQTVIVST  140 (219)
T ss_dssp             ---SSSCCGGGTTCSEEEEESCGGGCCHHHHHHHHHHHHTTTC-CSEEEEEE
T ss_pred             ---ccccccccCCCCEEEEHHHHHhCCHHHHHHHHHHHHHhhC-CCEEEEEc
Confidence               444455678999999999999994 4  479999999999 99966653

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}

Probab=99.68  E-value=1.5e-16  Score=130.12  Aligned_cols=122  Identities=20%  Similarity=0.182  Sum_probs=90.8

Q ss_pred             HHHHhhCCCChHHHHHHHHhhC-CCCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhcCCCceEEeCCCCchh
Q 037961           10 NLYAVARPNYPKELFKLIASKT-PKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKLPNIRYQLTPTMSIT   88 (262)
Q Consensus        10 ~~Y~~~rp~yp~~~~~~l~~~~-~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~   88 (262)
                      ..|.+....|-..+...+.... .++.+|||+|||+|..+..+++.+.+++|+|+|+.+++.+++.. .++..++     
T Consensus         8 ~~y~~~~~~~~~~~~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~D~~~~~~~~~~~~~-~~~~~~d-----   81 (230)
T 3cc8_A            8 SLYEEKSGHYYNAVNPNLLKHIKKEWKEVLDIGCSSGALGAAIKENGTRVSGIEAFPEAAEQAKEKL-DHVVLGD-----   81 (230)
T ss_dssp             ------------CCCHHHHTTCCTTCSEEEEETCTTSHHHHHHHTTTCEEEEEESSHHHHHHHHTTS-SEEEESC-----
T ss_pred             hhhhccchhHHHHHHHHHHHHhccCCCcEEEeCCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHhC-CcEEEcc-----
Confidence            3454444444444445555555 47789999999999999999988899999999999999998753 3566654     


Q ss_pred             hhhh--ccCCCCceeeEEEccccccC-ChhHHHHHHHHhhcCCCeEEEEEecCC
Q 037961           89 ELEQ--NVATQSSVDLVTIASALHWF-DLPQFYKQVKWVLKKPSGVIAAWTYTM  139 (262)
Q Consensus        89 ~~~~--~~~~~~~~D~V~~~~~~~~~-d~~~~l~~~~r~Lk~pgG~l~i~~~~~  139 (262)
                       +.+  .++++++||+|++..++|++ ++..+++++.++|+ |||.+++.....
T Consensus        82 -~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~-~gG~l~~~~~~~  133 (230)
T 3cc8_A           82 -IETMDMPYEEEQFDCVIFGDVLEHLFDPWAVIEKVKPYIK-QNGVILASIPNV  133 (230)
T ss_dssp             -TTTCCCCSCTTCEEEEEEESCGGGSSCHHHHHHHTGGGEE-EEEEEEEEEECT
T ss_pred             -hhhcCCCCCCCccCEEEECChhhhcCCHHHHHHHHHHHcC-CCCEEEEEeCCc
Confidence             333  45677899999999999999 99999999999999 999999865443

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}

Probab=99.68  E-value=2.1e-16  Score=130.39  Aligned_cols=110  Identities=17%  Similarity=0.150  Sum_probs=88.2

Q ss_pred             HHHHHHHHhhCCCCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhcC-------CCceEEeCCCCchhhhhhc
Q 037961           21 KELFKLIASKTPKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKL-------PNIRYQLTPTMSITELEQN   93 (262)
Q Consensus        21 ~~~~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~~~~~   93 (262)
                      +.+.+.+.....+..+|||+|||+|..+..+++.+.+|+|+|+|+.+++.+++.       .++++..+|      +.++
T Consensus        54 ~~l~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d------~~~~  127 (235)
T 3lcc_A           54 PLIVHLVDTSSLPLGRALVPGCGGGHDVVAMASPERFVVGLDISESALAKANETYGSSPKAEYFSFVKED------VFTW  127 (235)
T ss_dssp             HHHHHHHHTTCSCCEEEEEETCTTCHHHHHHCBTTEEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCC------TTTC
T ss_pred             HHHHHHHHhcCCCCCCEEEeCCCCCHHHHHHHhCCCeEEEEECCHHHHHHHHHHhhccCCCcceEEEECc------hhcC
Confidence            444555544443456999999999999999999999999999999999999863       247777765      4444


Q ss_pred             cCCCCceeeEEEccccccC---ChhHHHHHHHHhhcCCCeEEEEEecC
Q 037961           94 VATQSSVDLVTIASALHWF---DLPQFYKQVKWVLKKPSGVIAAWTYT  138 (262)
Q Consensus        94 ~~~~~~~D~V~~~~~~~~~---d~~~~l~~~~r~Lk~pgG~l~i~~~~  138 (262)
                      + ++++||+|++..++|++   +...+++++.++|| |||.|++..+.
T Consensus       128 ~-~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~Lk-pgG~l~~~~~~  173 (235)
T 3lcc_A          128 R-PTELFDLIFDYVFFCAIEPEMRPAWAKSMYELLK-PDGELITLMYP  173 (235)
T ss_dssp             C-CSSCEEEEEEESSTTTSCGGGHHHHHHHHHHHEE-EEEEEEEEECC
T ss_pred             C-CCCCeeEEEEChhhhcCCHHHHHHHHHHHHHHCC-CCcEEEEEEec
Confidence            4 45689999999999999   45669999999999 99999986654

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=99.68  E-value=9.5e-17  Score=134.45  Aligned_cols=125  Identities=12%  Similarity=-0.063  Sum_probs=87.6

Q ss_pred             hhhHHHHHHHHhhCCCCh-HHHHHHHHhhC--CCCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhcCCCceE
Q 037961            3 ELFIKQANLYAVARPNYP-KELFKLIASKT--PKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKLPNIRY   79 (262)
Q Consensus         3 ~~F~~~a~~Y~~~rp~yp-~~~~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~   79 (262)
                      ..|+..+..|.+....-. +...+.+....  +++.+|||+|||+|.++..+++++.+|+|+|+|+.|++.|+++.....
T Consensus        12 ~~wd~~a~~f~~~~~~~~~~~~~~~il~~l~l~~g~~VLDlGcGtG~~a~~La~~g~~V~gvD~S~~ml~~Ar~~~~~~~   91 (261)
T 3iv6_A           12 EAWELIGNQFWTIGRVAARPSDRENDIFLENIVPGSTVAVIGASTRFLIEKALERGASVTVFDFSQRMCDDLAEALADRC   91 (261)
T ss_dssp             HHHHTTTTHHHHTSCGGGSCCHHHHHHHTTTCCTTCEEEEECTTCHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTSSSC
T ss_pred             hHHHHHHHHHHHHhhccccHHHHHHHHHhcCCCCcCEEEEEeCcchHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcc
Confidence            456665656644322110 23344455444  477899999999999999999999999999999999999986422112


Q ss_pred             EeCCCCchhhhhhccC-----CCCceeeEEEccccccCC---hhHHHHHHHHhhcCCCeEEEEE
Q 037961           80 QLTPTMSITELEQNVA-----TQSSVDLVTIASALHWFD---LPQFYKQVKWVLKKPSGVIAAW  135 (262)
Q Consensus        80 ~~~~~~~~~~~~~~~~-----~~~~~D~V~~~~~~~~~d---~~~~l~~~~r~Lk~pgG~l~i~  135 (262)
                      +..+      +.+...     .+++||+|+++.++||+.   ...+++++.++|  |||++++.
T Consensus        92 v~~~------~~~~~~~~~~~~~~~fD~Vv~~~~l~~~~~~~~~~~l~~l~~lL--PGG~l~lS  147 (261)
T 3iv6_A           92 VTID------LLDITAEIPKELAGHFDFVLNDRLINRFTTEEARRACLGMLSLV--GSGTVRAS  147 (261)
T ss_dssp             CEEE------ECCTTSCCCGGGTTCCSEEEEESCGGGSCHHHHHHHHHHHHHHH--TTSEEEEE
T ss_pred             ceee------eeecccccccccCCCccEEEEhhhhHhCCHHHHHHHHHHHHHhC--cCcEEEEE
Confidence            2222      111111     256899999999999873   445899999998  69999983

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.67  E-value=8.5e-17  Score=133.23  Aligned_cols=109  Identities=12%  Similarity=0.089  Sum_probs=85.2

Q ss_pred             HHHHHHHHhhC-CCCCeEEEEcCcccHhHHHHHhh-CCeEEEEcCCHHHHHHHhcC-----CCceEEeCCCCchhhhhh-
Q 037961           21 KELFKLIASKT-PKRNLAWDVGTRSGQAAASLAQI-YQHVIATDTSPKQLKFAIKL-----PNIRYQLTPTMSITELEQ-   92 (262)
Q Consensus        21 ~~~~~~l~~~~-~~~~~vlDvGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~-----~~~~~~~~~~~~~~~~~~-   92 (262)
                      ..+++.+.... +++.+|||||||+|..+..+++. ..++++||+|+.|++.|++.     .++.++.++      ++. 
T Consensus        47 ~~~m~~~a~~~~~~G~rVLdiG~G~G~~~~~~~~~~~~~v~~id~~~~~~~~a~~~~~~~~~~~~~~~~~------a~~~  120 (236)
T 3orh_A           47 TPYMHALAAAASSKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGL------WEDV  120 (236)
T ss_dssp             HHHHHHHHHHHTTTCEEEEEECCTTSHHHHHHTTSCEEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESC------HHHH
T ss_pred             HHHHHHHHHhhccCCCeEEEECCCccHHHHHHHHhCCcEEEEEeCCHHHHHHHHHHHhhCCCceEEEeeh------HHhh
Confidence            44555555544 57889999999999999999886 46899999999999999852     456666665      333 


Q ss_pred             -ccCCCCceeeEEE-----ccccccC-ChhHHHHHHHHhhcCCCeEEEEEe
Q 037961           93 -NVATQSSVDLVTI-----ASALHWF-DLPQFYKQVKWVLKKPSGVIAAWT  136 (262)
Q Consensus        93 -~~~~~~~~D~V~~-----~~~~~~~-d~~~~l~~~~r~Lk~pgG~l~i~~  136 (262)
                       .++++++||.|+.     ....++. +++.+++++.|+|| |||+|++++
T Consensus       121 ~~~~~~~~FD~i~~D~~~~~~~~~~~~~~~~~~~e~~rvLk-PGG~l~f~~  170 (236)
T 3orh_A          121 APTLPDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLK-PGGVLTYCN  170 (236)
T ss_dssp             GGGSCTTCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEE-EEEEEEECC
T ss_pred             cccccccCCceEEEeeeecccchhhhcchhhhhhhhhheeC-CCCEEEEEe
Confidence             2467889999974     4455555 89999999999999 999998754

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}

Probab=99.67  E-value=2.6e-16  Score=127.16  Aligned_cols=109  Identities=17%  Similarity=0.173  Sum_probs=86.9

Q ss_pred             HHHHHHHhhCCCCCeEEEEcCcccHhH-HHHHhhCCeEEEEcCCHHHHHHHhcC-----CCceEEeCCCCchhhhhhccC
Q 037961           22 ELFKLIASKTPKRNLAWDVGTRSGQAA-ASLAQIYQHVIATDTSPKQLKFAIKL-----PNIRYQLTPTMSITELEQNVA   95 (262)
Q Consensus        22 ~~~~~l~~~~~~~~~vlDvGcG~G~~~-~~l~~~~~~v~~vD~s~~~~~~a~~~-----~~~~~~~~~~~~~~~~~~~~~   95 (262)
                      .+++.+. ..+++.+|||+|||+|..+ ..++..+.+|+|+|+|+.|++.+++.     .++.+..++      +.++++
T Consensus        13 ~~~~~~~-~~~~~~~vLDiGcG~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d------~~~~~~   85 (209)
T 2p8j_A           13 RFLKYCN-ESNLDKTVLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAENFSRENNFKLNISKGD------IRKLPF   85 (209)
T ss_dssp             HHHHHHH-HSSSCSEEEEESCCSSSCTHHHHHHTTCEEEEEECCHHHHHHHHHHHHHHTCCCCEEECC------TTSCCS
T ss_pred             HHHHHHh-ccCCCCEEEEECCCCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEECc------hhhCCC
Confidence            3344433 4567789999999999984 45566788999999999999998753     567787765      556667


Q ss_pred             CCCceeeEEEccccccC---ChhHHHHHHHHhhcCCCeEEEEEecC
Q 037961           96 TQSSVDLVTIASALHWF---DLPQFYKQVKWVLKKPSGVIAAWTYT  138 (262)
Q Consensus        96 ~~~~~D~V~~~~~~~~~---d~~~~l~~~~r~Lk~pgG~l~i~~~~  138 (262)
                      ++++||+|++..++|++   ++..+++++.++|| |||.+++..+.
T Consensus        86 ~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~Lk-pgG~l~~~~~~  130 (209)
T 2p8j_A           86 KDESMSFVYSYGTIFHMRKNDVKEAIDEIKRVLK-PGGLACINFLT  130 (209)
T ss_dssp             CTTCEEEEEECSCGGGSCHHHHHHHHHHHHHHEE-EEEEEEEEEEE
T ss_pred             CCCceeEEEEcChHHhCCHHHHHHHHHHHHHHcC-CCcEEEEEEec
Confidence            78899999999999988   56679999999999 99999985443

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=99.67  E-value=1.5e-16  Score=128.16  Aligned_cols=111  Identities=23%  Similarity=0.197  Sum_probs=88.6

Q ss_pred             hHHHHHHHHhhCCCCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhcC-----CCceEEeCCCCchhhhhhcc
Q 037961           20 PKELFKLIASKTPKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKL-----PNIRYQLTPTMSITELEQNV   94 (262)
Q Consensus        20 p~~~~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~-----~~~~~~~~~~~~~~~~~~~~   94 (262)
                      +...+..++...+++ +|||+|||+|..+..+++.+.+|+|+|+|+.|++.+++.     .++.+..++      +...+
T Consensus        17 ~~~~l~~~~~~~~~~-~vLdiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d------~~~~~   89 (202)
T 2kw5_A           17 PNDFLVSVANQIPQG-KILCLAEGEGRNACFLASLGYEVTAVDQSSVGLAKAKQLAQEKGVKITTVQSN------LADFD   89 (202)
T ss_dssp             CCSSHHHHHHHSCSS-EEEECCCSCTHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHTCCEEEECCB------TTTBS
T ss_pred             chHHHHHHHHhCCCC-CEEEECCCCCHhHHHHHhCCCeEEEEECCHHHHHHHHHHHHhcCCceEEEEcC------hhhcC
Confidence            344455555666666 999999999999999999999999999999999998863     367777654      55566


Q ss_pred             CCCCceeeEEEccccccC--ChhHHHHHHHHhhcCCCeEEEEEecCC
Q 037961           95 ATQSSVDLVTIASALHWF--DLPQFYKQVKWVLKKPSGVIAAWTYTM  139 (262)
Q Consensus        95 ~~~~~~D~V~~~~~~~~~--d~~~~l~~~~r~Lk~pgG~l~i~~~~~  139 (262)
                      +++++||+|+++. .|+-  +...+++++.++|| |||.+++..+..
T Consensus        90 ~~~~~fD~v~~~~-~~~~~~~~~~~l~~~~~~L~-pgG~l~~~~~~~  134 (202)
T 2kw5_A           90 IVADAWEGIVSIF-CHLPSSLRQQLYPKVYQGLK-PGGVFILEGFAP  134 (202)
T ss_dssp             CCTTTCSEEEEEC-CCCCHHHHHHHHHHHHTTCC-SSEEEEEEEECT
T ss_pred             CCcCCccEEEEEh-hcCCHHHHHHHHHHHHHhcC-CCcEEEEEEecc
Confidence            6788999999964 3442  57779999999999 999999966543

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*

Probab=99.67  E-value=2.3e-16  Score=141.06  Aligned_cols=112  Identities=13%  Similarity=0.131  Sum_probs=92.3

Q ss_pred             HHHHHHHhhC--CCCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhcCCCceEEeCCCCchhhhhhccCCCCc
Q 037961           22 ELFKLIASKT--PKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKLPNIRYQLTPTMSITELEQNVATQSS   99 (262)
Q Consensus        22 ~~~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (262)
                      .+.+.+....  +++.+|||+|||+|.++..+++.+.+|+|+|+|+.|++.|++. ++..... .+..++++.+++++++
T Consensus        94 ~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~g~~v~gvD~s~~~~~~a~~~-~~~~~~~-~~~~~~~~~l~~~~~~  171 (416)
T 4e2x_A           94 MLARDFLATELTGPDPFIVEIGCNDGIMLRTIQEAGVRHLGFEPSSGVAAKAREK-GIRVRTD-FFEKATADDVRRTEGP  171 (416)
T ss_dssp             HHHHHHHHTTTCSSSCEEEEETCTTTTTHHHHHHTTCEEEEECCCHHHHHHHHTT-TCCEECS-CCSHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHhCCCCCCEEEEecCCCCHHHHHHHHcCCcEEEECCCHHHHHHHHHc-CCCccee-eechhhHhhcccCCCC
Confidence            3445555554  3678999999999999999999999999999999999999976 3443332 2223566777777899


Q ss_pred             eeeEEEccccccC-ChhHHHHHHHHhhcCCCeEEEEEe
Q 037961          100 VDLVTIASALHWF-DLPQFYKQVKWVLKKPSGVIAAWT  136 (262)
Q Consensus       100 ~D~V~~~~~~~~~-d~~~~l~~~~r~Lk~pgG~l~i~~  136 (262)
                      ||+|++..++||+ |+..+++++.++|| |||+|++..
T Consensus       172 fD~I~~~~vl~h~~d~~~~l~~~~r~Lk-pgG~l~i~~  208 (416)
T 4e2x_A          172 ANVIYAANTLCHIPYVQSVLEGVDALLA-PDGVFVFED  208 (416)
T ss_dssp             EEEEEEESCGGGCTTHHHHHHHHHHHEE-EEEEEEEEE
T ss_pred             EEEEEECChHHhcCCHHHHHHHHHHHcC-CCeEEEEEe
Confidence            9999999999999 99999999999999 999999844

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=99.66  E-value=6.9e-16  Score=123.52  Aligned_cols=96  Identities=18%  Similarity=0.229  Sum_probs=82.7

Q ss_pred             CCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhcC------CCceEEeCCCCchhhhhhccCCCCceeeEEEc
Q 037961           33 KRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKL------PNIRYQLTPTMSITELEQNVATQSSVDLVTIA  106 (262)
Q Consensus        33 ~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~  106 (262)
                      ++.+|||+|||+|..+..+++.+.+|+|+|+|+.+++.+++.      +++.+..++      +.++++ +++||+|++.
T Consensus        32 ~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d------~~~~~~-~~~~D~v~~~  104 (199)
T 2xvm_A           32 KPGKTLDLGCGNGRNSLYLAANGYDVDAWDKNAMSIANVERIKSIENLDNLHTRVVD------LNNLTF-DRQYDFILST  104 (199)
T ss_dssp             CSCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECC------GGGCCC-CCCEEEEEEE
T ss_pred             CCCeEEEEcCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHhCCCCCcEEEEcc------hhhCCC-CCCceEEEEc
Confidence            567999999999999999999999999999999999998752      367888765      555665 7889999999


Q ss_pred             cccccC---ChhHHHHHHHHhhcCCCeEEEEEe
Q 037961          107 SALHWF---DLPQFYKQVKWVLKKPSGVIAAWT  136 (262)
Q Consensus       107 ~~~~~~---d~~~~l~~~~r~Lk~pgG~l~i~~  136 (262)
                      .++||+   +...+++++.++|| |||.+++..
T Consensus       105 ~~l~~~~~~~~~~~l~~~~~~L~-~gG~l~~~~  136 (199)
T 2xvm_A          105 VVLMFLEAKTIPGLIANMQRCTK-PGGYNLIVA  136 (199)
T ss_dssp             SCGGGSCGGGHHHHHHHHHHTEE-EEEEEEEEE
T ss_pred             chhhhCCHHHHHHHHHHHHHhcC-CCeEEEEEE
Confidence            999998   45679999999999 999988744

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=99.66  E-value=3e-16  Score=128.88  Aligned_cols=101  Identities=18%  Similarity=0.101  Sum_probs=86.0

Q ss_pred             HHHHHHHHh-hCCCCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhc-CCCceEEeCCCCchhhh-hhccCC-
Q 037961           21 KELFKLIAS-KTPKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIK-LPNIRYQLTPTMSITEL-EQNVAT-   96 (262)
Q Consensus        21 ~~~~~~l~~-~~~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~-~~~~~~~~~~~~~~~~~-~~~~~~-   96 (262)
                      ..+++.+.. ..+++.+|||+|||+|.++..+++.+.+|+|+|+|+.|++.+++ .+++++..++      + +.++++ 
T Consensus        35 ~~l~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d------~~~~~~~~~  108 (226)
T 3m33_A           35 ELTFDLWLSRLLTPQTRVLEAGCGHGPDAARFGPQAARWAAYDFSPELLKLARANAPHADVYEWN------GKGELPAGL  108 (226)
T ss_dssp             THHHHHHHHHHCCTTCEEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHCTTSEEEECC------SCSSCCTTC
T ss_pred             HHHHHHHHHhcCCCCCeEEEeCCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHhCCCceEEEcc------hhhccCCcC
Confidence            445555444 45788999999999999999999999999999999999999986 4788998876      3 446666 


Q ss_pred             CCceeeEEEccccccCChhHHHHHHHHhhcCCCeEEE
Q 037961           97 QSSVDLVTIASALHWFDLPQFYKQVKWVLKKPSGVIA  133 (262)
Q Consensus        97 ~~~~D~V~~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~  133 (262)
                      +++||+|+++     .++..+++++.++|| |||.|+
T Consensus       109 ~~~fD~v~~~-----~~~~~~l~~~~~~Lk-pgG~l~  139 (226)
T 3m33_A          109 GAPFGLIVSR-----RGPTSVILRLPELAA-PDAHFL  139 (226)
T ss_dssp             CCCEEEEEEE-----SCCSGGGGGHHHHEE-EEEEEE
T ss_pred             CCCEEEEEeC-----CCHHHHHHHHHHHcC-CCcEEE
Confidence            8899999987     578899999999999 999998

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}

Probab=99.66  E-value=4.8e-16  Score=128.92  Aligned_cols=115  Identities=17%  Similarity=0.154  Sum_probs=88.0

Q ss_pred             HHHHHHhhCCCCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhcC---CCceEEeCCCCchhhhhhccCCCCc
Q 037961           23 LFKLIASKTPKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKL---PNIRYQLTPTMSITELEQNVATQSS   99 (262)
Q Consensus        23 ~~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~~~~~~~   99 (262)
                      .+..+....+++.+|||+|||+|..+..+++.+.+|+|+|+|+.|++.++++   .++.+.+++........... ...+
T Consensus        46 ~~~~~~~~~~~~~~vLD~GcG~G~~~~~la~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~  124 (245)
T 3ggd_A           46 DLPRFELLFNPELPLIDFACGNGTQTKFLSQFFPRVIGLDVSKSALEIAAKENTAANISYRLLDGLVPEQAAQIH-SEIG  124 (245)
T ss_dssp             HHHHHTTTSCTTSCEEEETCTTSHHHHHHHHHSSCEEEEESCHHHHHHHHHHSCCTTEEEEECCTTCHHHHHHHH-HHHC
T ss_pred             HHHHHhhccCCCCeEEEEcCCCCHHHHHHHHhCCCEEEEECCHHHHHHHHHhCcccCceEEECcccccccccccc-cccC
Confidence            3444555556778999999999999999999988999999999999999863   47888887721111111110 1134


Q ss_pred             eeeEEEccccccCC---hhHHHHHHHHhhcCCCeEEEEEecCC
Q 037961          100 VDLVTIASALHWFD---LPQFYKQVKWVLKKPSGVIAAWTYTM  139 (262)
Q Consensus       100 ~D~V~~~~~~~~~d---~~~~l~~~~r~Lk~pgG~l~i~~~~~  139 (262)
                      ||+|++..++|+++   ...+++++.++|| |||++++.....
T Consensus       125 ~d~v~~~~~~~~~~~~~~~~~l~~~~~~Lk-pgG~l~i~~~~~  166 (245)
T 3ggd_A          125 DANIYMRTGFHHIPVEKRELLGQSLRILLG-KQGAMYLIELGT  166 (245)
T ss_dssp             SCEEEEESSSTTSCGGGHHHHHHHHHHHHT-TTCEEEEEEECT
T ss_pred             ccEEEEcchhhcCCHHHHHHHHHHHHHHcC-CCCEEEEEeCCc
Confidence            99999999999995   4579999999999 999988866553

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.65  E-value=4e-15  Score=118.40  Aligned_cols=120  Identities=18%  Similarity=0.223  Sum_probs=93.5

Q ss_pred             HHHhhCCCCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhcC-CCceEEeCCCCchhhhhhccCCCCceeeEE
Q 037961           26 LIASKTPKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKL-PNIRYQLTPTMSITELEQNVATQSSVDLVT  104 (262)
Q Consensus        26 ~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~  104 (262)
                      .+....+++.+|||+|||+|..+..+++.+.+++++|+|+.+++.+++. +++.+..++      +...++++++||+|+
T Consensus        39 ~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~d------~~~~~~~~~~~D~i~  112 (195)
T 3cgg_A           39 LIDAMAPRGAKILDAGCGQGRIGGYLSKQGHDVLGTDLDPILIDYAKQDFPEARWVVGD------LSVDQISETDFDLIV  112 (195)
T ss_dssp             HHHHHSCTTCEEEEETCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHCTTSEEEECC------TTTSCCCCCCEEEEE
T ss_pred             HHHHhccCCCeEEEECCCCCHHHHHHHHCCCcEEEEcCCHHHHHHHHHhCCCCcEEEcc------cccCCCCCCceeEEE
Confidence            4444467888999999999999999999999999999999999999864 678888765      445556778999999


Q ss_pred             Ec-cccccCC---hhHHHHHHHHhhcCCCeEEEEEecCCCcc-cHHHHHhhcc
Q 037961          105 IA-SALHWFD---LPQFYKQVKWVLKKPSGVIAAWTYTMPEI-NESVGAVFKP  152 (262)
Q Consensus       105 ~~-~~~~~~d---~~~~l~~~~r~Lk~pgG~l~i~~~~~~~~-~~~~~~~~~~  152 (262)
                      ++ ..+|+++   ...+++++.++|+ |||.+++.......+ ...+.+++.+
T Consensus       113 ~~~~~~~~~~~~~~~~~l~~~~~~l~-~~G~l~~~~~~~~~~~~~~~~~~l~~  164 (195)
T 3cgg_A          113 SAGNVMGFLAEDGREPALANIHRALG-ADGRAVIGFGAGRGWVFGDFLEVAER  164 (195)
T ss_dssp             ECCCCGGGSCHHHHHHHHHHHHHHEE-EEEEEEEEEETTSSCCHHHHHHHHHH
T ss_pred             ECCcHHhhcChHHHHHHHHHHHHHhC-CCCEEEEEeCCCCCcCHHHHHHHHHH
Confidence            98 7888873   3669999999999 999999854433222 2444444443

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=99.65  E-value=1.3e-15  Score=129.36  Aligned_cols=105  Identities=22%  Similarity=0.216  Sum_probs=86.3

Q ss_pred             HHHHHHhhC--CCCCeEEEEcCcccHhHHHHH-hhCCeEEEEcCCHHHHHHHhcC-------CCceEEeCCCCchhhhhh
Q 037961           23 LFKLIASKT--PKRNLAWDVGTRSGQAAASLA-QIYQHVIATDTSPKQLKFAIKL-------PNIRYQLTPTMSITELEQ   92 (262)
Q Consensus        23 ~~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~-~~~~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~~~~   92 (262)
                      .++.+....  +++.+|||+|||+|.++..++ ..+.+|+|+|+|+.+++.+++.       .++.+..++      +.+
T Consensus        52 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d------~~~  125 (287)
T 1kpg_A           52 KIDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAG------WEQ  125 (287)
T ss_dssp             HHHHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESC------GGG
T ss_pred             HHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECC------hhh
Confidence            345555554  467899999999999999998 4588999999999999998753       467777765      444


Q ss_pred             ccCCCCceeeEEEccccccC---ChhHHHHHHHHhhcCCCeEEEEEec
Q 037961           93 NVATQSSVDLVTIASALHWF---DLPQFYKQVKWVLKKPSGVIAAWTY  137 (262)
Q Consensus        93 ~~~~~~~~D~V~~~~~~~~~---d~~~~l~~~~r~Lk~pgG~l~i~~~  137 (262)
                      ++   ++||+|++..++|++   ++..+++++.++|| |||.+++...
T Consensus       126 ~~---~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~Lk-pgG~l~~~~~  169 (287)
T 1kpg_A          126 FD---EPVDRIVSIGAFEHFGHERYDAFFSLAHRLLP-ADGVMLLHTI  169 (287)
T ss_dssp             CC---CCCSEEEEESCGGGTCTTTHHHHHHHHHHHSC-TTCEEEEEEE
T ss_pred             CC---CCeeEEEEeCchhhcChHHHHHHHHHHHHhcC-CCCEEEEEEe
Confidence            43   789999999999998   46789999999999 9999998544

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}

Probab=99.65  E-value=7e-16  Score=125.43  Aligned_cols=111  Identities=17%  Similarity=0.193  Sum_probs=84.6

Q ss_pred             HHHHHHHhhCCCCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhcCCCceEEeCCCCchhhhhhccCCCCcee
Q 037961           22 ELFKLIASKTPKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKLPNIRYQLTPTMSITELEQNVATQSSVD  101 (262)
Q Consensus        22 ~~~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D  101 (262)
                      .+++.+... +++.+|||+|||+|.++..+   ..+|+|+|+|+.         ++.+..++      +.++++++++||
T Consensus        57 ~~~~~l~~~-~~~~~vLDiG~G~G~~~~~l---~~~v~~~D~s~~---------~~~~~~~d------~~~~~~~~~~fD  117 (215)
T 2zfu_A           57 RIARDLRQR-PASLVVADFGCGDCRLASSI---RNPVHCFDLASL---------DPRVTVCD------MAQVPLEDESVD  117 (215)
T ss_dssp             HHHHHHHTS-CTTSCEEEETCTTCHHHHHC---CSCEEEEESSCS---------STTEEESC------TTSCSCCTTCEE
T ss_pred             HHHHHHhcc-CCCCeEEEECCcCCHHHHHh---hccEEEEeCCCC---------CceEEEec------cccCCCCCCCEe
Confidence            344444432 56678999999999999887   378999999987         56677654      555667788999


Q ss_pred             eEEEccccccCChhHHHHHHHHhhcCCCeEEEEEecCCCc-ccHHHHHhhcc
Q 037961          102 LVTIASALHWFDLPQFYKQVKWVLKKPSGVIAAWTYTMPE-INESVGAVFKP  152 (262)
Q Consensus       102 ~V~~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~~~~~-~~~~~~~~~~~  152 (262)
                      +|++..++|+.++..+++++.++|+ |||.+++....... -...+.+++.+
T Consensus       118 ~v~~~~~l~~~~~~~~l~~~~~~L~-~gG~l~i~~~~~~~~~~~~~~~~l~~  168 (215)
T 2zfu_A          118 VAVFCLSLMGTNIRDFLEEANRVLK-PGGLLKVAEVSSRFEDVRTFLRAVTK  168 (215)
T ss_dssp             EEEEESCCCSSCHHHHHHHHHHHEE-EEEEEEEEECGGGCSCHHHHHHHHHH
T ss_pred             EEEEehhccccCHHHHHHHHHHhCC-CCeEEEEEEcCCCCCCHHHHHHHHHH
Confidence            9999999998799999999999999 99999986543211 12445555544

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.64  E-value=5.6e-16  Score=128.96  Aligned_cols=126  Identities=21%  Similarity=0.285  Sum_probs=93.0

Q ss_pred             ChhhhHHHHHHHHhhCCC----Ch--HHHHHHHHhhC--CCCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHh
Q 037961            1 MAELFIKQANLYAVARPN----YP--KELFKLIASKT--PKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAI   72 (262)
Q Consensus         1 ~~~~F~~~a~~Y~~~rp~----yp--~~~~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~   72 (262)
                      |...|+..|+.|+..-+.    +.  ..++..+....  +++.+|||+|||+|..+..+++.+.+|+|+|+|+.|++.++
T Consensus         1 m~~~y~~~a~~yd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~   80 (252)
T 1wzn_A            1 MYELYTLLAEYYDTIYRRRIERVKAEIDFVEEIFKEDAKREVRRVLDLACGTGIPTLELAERGYEVVGLDLHEEMLRVAR   80 (252)
T ss_dssp             CCGGGTTTGGGHHHHTHHHHHTHHHHHHHHHHHHHHTCSSCCCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHhcccCCCEEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHH
Confidence            556777778888774211    11  12233333332  35689999999999999999999999999999999999987


Q ss_pred             cC-----CCceEEeCCCCchhhhhhccCCCCceeeEEEcc-ccccC---ChhHHHHHHHHhhcCCCeEEEE
Q 037961           73 KL-----PNIRYQLTPTMSITELEQNVATQSSVDLVTIAS-ALHWF---DLPQFYKQVKWVLKKPSGVIAA  134 (262)
Q Consensus        73 ~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~-~~~~~---d~~~~l~~~~r~Lk~pgG~l~i  134 (262)
                      +.     .++.+..++      +.+++++ ++||+|++.. .++++   +...+++++.++|+ |||.+++
T Consensus        81 ~~~~~~~~~v~~~~~d------~~~~~~~-~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~-pgG~li~  143 (252)
T 1wzn_A           81 RKAKERNLKIEFLQGD------VLEIAFK-NEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALK-PGGVFIT  143 (252)
T ss_dssp             HHHHHTTCCCEEEESC------GGGCCCC-SCEEEEEECSSGGGGSCHHHHHHHHHHHHHHEE-EEEEEEE
T ss_pred             HHHHhcCCceEEEECC------hhhcccC-CCccEEEEcCCchhcCCHHHHHHHHHHHHHHcC-CCeEEEE
Confidence            53     367888765      4555543 6899999864 44555   35669999999999 9999987

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.64  E-value=2.5e-16  Score=130.15  Aligned_cols=110  Identities=13%  Similarity=0.088  Sum_probs=84.5

Q ss_pred             HHHHHHHHhhC-CCCCeEEEEcCcccHhHHHHHhhCC-eEEEEcCCHHHHHHHhcC-----CCceEEeCCCCchhhhhhc
Q 037961           21 KELFKLIASKT-PKRNLAWDVGTRSGQAAASLAQIYQ-HVIATDTSPKQLKFAIKL-----PNIRYQLTPTMSITELEQN   93 (262)
Q Consensus        21 ~~~~~~l~~~~-~~~~~vlDvGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~-----~~~~~~~~~~~~~~~~~~~   93 (262)
                      ..++..+.... .++.+|||||||+|..+..+++.+. +|+|+|+|+.|++.|++.     .++.+..++      ++++
T Consensus        47 ~~~~~~l~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d------~~~~  120 (236)
T 1zx0_A           47 TPYMHALAAAASSKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGL------WEDV  120 (236)
T ss_dssp             HHHHHHHHHHHTTTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESC------HHHH
T ss_pred             HHHHHHHHhhcCCCCCeEEEEeccCCHHHHHHHhcCCCeEEEEcCCHHHHHHHHHHHHhcCCCeEEEecC------HHHh
Confidence            45555555443 4678999999999999999988654 899999999999999853     456777654      5666


Q ss_pred             --cCCCCceeeEEE-ccccc--cC---ChhHHHHHHHHhhcCCCeEEEEEec
Q 037961           94 --VATQSSVDLVTI-ASALH--WF---DLPQFYKQVKWVLKKPSGVIAAWTY  137 (262)
Q Consensus        94 --~~~~~~~D~V~~-~~~~~--~~---d~~~~l~~~~r~Lk~pgG~l~i~~~  137 (262)
                        ++++++||+|++ .++++  ..   +.+.+++++.|+|| |||+|++...
T Consensus       121 ~~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~~l~~~~r~Lk-pgG~l~~~~~  171 (236)
T 1zx0_A          121 APTLPDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLK-PGGVLTYCNL  171 (236)
T ss_dssp             GGGSCTTCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEE-EEEEEEECCH
T ss_pred             hcccCCCceEEEEECCcccchhhhhhhhHHHHHHHHHHhcC-CCeEEEEEec
Confidence              778899999999 55532  11   34467999999999 9999998543

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=99.64  E-value=2e-15  Score=130.17  Aligned_cols=106  Identities=17%  Similarity=0.161  Sum_probs=87.4

Q ss_pred             HHHHHHhhC--CCCCeEEEEcCcccHhHHHHHhh-CCeEEEEcCCHHHHHHHhcC-------CCceEEeCCCCchhhhhh
Q 037961           23 LFKLIASKT--PKRNLAWDVGTRSGQAAASLAQI-YQHVIATDTSPKQLKFAIKL-------PNIRYQLTPTMSITELEQ   92 (262)
Q Consensus        23 ~~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~~~~   92 (262)
                      .++.+....  +++.+|||+|||+|.++..+++. +.+|+|+|+|+.|++.+++.       .++.+..++      +.+
T Consensus        78 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d------~~~  151 (318)
T 2fk8_A           78 KVDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQG------WED  151 (318)
T ss_dssp             HHHHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESC------GGG
T ss_pred             HHHHHHHhcCCCCcCEEEEEcccchHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECC------hHH
Confidence            345566554  46789999999999999999987 89999999999999998853       357777765      444


Q ss_pred             ccCCCCceeeEEEccccccC---ChhHHHHHHHHhhcCCCeEEEEEecC
Q 037961           93 NVATQSSVDLVTIASALHWF---DLPQFYKQVKWVLKKPSGVIAAWTYT  138 (262)
Q Consensus        93 ~~~~~~~~D~V~~~~~~~~~---d~~~~l~~~~r~Lk~pgG~l~i~~~~  138 (262)
                      ++   ++||+|++..++|++   ++..+++++.++|| |||++++....
T Consensus       152 ~~---~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~Lk-pgG~l~~~~~~  196 (318)
T 2fk8_A          152 FA---EPVDRIVSIEAFEHFGHENYDDFFKRCFNIMP-ADGRMTVQSSV  196 (318)
T ss_dssp             CC---CCCSEEEEESCGGGTCGGGHHHHHHHHHHHSC-TTCEEEEEEEE
T ss_pred             CC---CCcCEEEEeChHHhcCHHHHHHHHHHHHHhcC-CCcEEEEEEec
Confidence            42   789999999999998   56779999999999 99999985543

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}

Probab=99.64  E-value=5.7e-16  Score=132.84  Aligned_cols=103  Identities=10%  Similarity=0.096  Sum_probs=78.1

Q ss_pred             CCCeEEEEcCcccHhHHHHHhh-CCeEEEEcCCHHHHHHHhcC----C--------CceEEeCCCCchhhh--hhc--cC
Q 037961           33 KRNLAWDVGTRSGQAAASLAQI-YQHVIATDTSPKQLKFAIKL----P--------NIRYQLTPTMSITEL--EQN--VA   95 (262)
Q Consensus        33 ~~~~vlDvGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~----~--------~~~~~~~~~~~~~~~--~~~--~~   95 (262)
                      ++.+|||||||+|..+..++.. +.+|+|+|+|+.|++.|+++    .        ++++.+.+..  +++  +++  ++
T Consensus        48 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~--~d~~~~~l~~~~  125 (302)
T 2vdw_A           48 NKRKVLAIDFGNGADLEKYFYGEIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIR--SDTFVSSVREVF  125 (302)
T ss_dssp             SCCEEEETTCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTT--SSSHHHHHHTTC
T ss_pred             CCCeEEEEecCCcHhHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcc--cchhhhhhhccc
Confidence            4689999999999866665554 57999999999999999863    1        1446565510  122  222  34


Q ss_pred             CCCceeeEEEccccccC----ChhHHHHHHHHhhcCCCeEEEEEecC
Q 037961           96 TQSSVDLVTIASALHWF----DLPQFYKQVKWVLKKPSGVIAAWTYT  138 (262)
Q Consensus        96 ~~~~~D~V~~~~~~~~~----d~~~~l~~~~r~Lk~pgG~l~i~~~~  138 (262)
                      ++++||+|+|..++||+    +...+++++.++|| |||.|++.+..
T Consensus       126 ~~~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~Lk-pGG~~i~~~~~  171 (302)
T 2vdw_A          126 YFGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTA-SGGKVLITTMD  171 (302)
T ss_dssp             CSSCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEE-EEEEEEEEEEC
T ss_pred             cCCCeeEEEECchHHHhCCHHHHHHHHHHHHHHcC-CCCEEEEEeCC
Confidence            67899999999999986    34679999999999 99999885543

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=99.64  E-value=1.3e-15  Score=134.43  Aligned_cols=124  Identities=13%  Similarity=0.188  Sum_probs=96.1

Q ss_pred             HHHHHHHhhC----CCCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhcC-----CCceEEeCCCCchhhhhh
Q 037961           22 ELFKLIASKT----PKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKL-----PNIRYQLTPTMSITELEQ   92 (262)
Q Consensus        22 ~~~~~l~~~~----~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~-----~~~~~~~~~~~~~~~~~~   92 (262)
                      .+.+.+....    .++.+|||+|||+|.++..+++.+.+|+++|+|+.+++.++++     .++++..+|      +.+
T Consensus       218 ~ll~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~la~~g~~V~gvDis~~al~~A~~n~~~~~~~v~~~~~D------~~~  291 (381)
T 3dmg_A          218 LLLEALQERLGPEGVRGRQVLDLGAGYGALTLPLARMGAEVVGVEDDLASVLSLQKGLEANALKAQALHSD------VDE  291 (381)
T ss_dssp             HHHHHHHHHHCTTTTTTCEEEEETCTTSTTHHHHHHTTCEEEEEESBHHHHHHHHHHHHHTTCCCEEEECS------TTT
T ss_pred             HHHHHHHHhhcccCCCCCEEEEEeeeCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEcc------hhh
Confidence            3455555433    2677999999999999999999999999999999999999863     247777765      444


Q ss_pred             ccCCCCceeeEEEcccccc-----C-ChhHHHHHHHHhhcCCCeEEEEEecCCCcccHHHHHhhcc
Q 037961           93 NVATQSSVDLVTIASALHW-----F-DLPQFYKQVKWVLKKPSGVIAAWTYTMPEINESVGAVFKP  152 (262)
Q Consensus        93 ~~~~~~~~D~V~~~~~~~~-----~-d~~~~l~~~~r~Lk~pgG~l~i~~~~~~~~~~~~~~~~~~  152 (262)
                      ...++++||+|+++..+|+     . +...+++++.++|| |||.+++.......+...+.+.+..
T Consensus       292 ~~~~~~~fD~Ii~npp~~~~~~~~~~~~~~~l~~~~~~Lk-pGG~l~iv~n~~l~~~~~l~~~f~~  356 (381)
T 3dmg_A          292 ALTEEARFDIIVTNPPFHVGGAVILDVAQAFVNVAAARLR-PGGVFFLVSNPFLKYEPLLEEKFGA  356 (381)
T ss_dssp             TSCTTCCEEEEEECCCCCTTCSSCCHHHHHHHHHHHHHEE-EEEEEEEEECTTSCHHHHHHHHHSC
T ss_pred             ccccCCCeEEEEECCchhhcccccHHHHHHHHHHHHHhcC-cCcEEEEEEcCCCChHHHHHHhhcc
Confidence            4445689999999999998     4 56679999999999 9999999766654444444444443

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}

Probab=99.64  E-value=1.4e-15  Score=129.08  Aligned_cols=107  Identities=15%  Similarity=0.158  Sum_probs=87.3

Q ss_pred             hHHHHHHHHhhCCCCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhcC-----CCceEEeCCCCchhhhhhcc
Q 037961           20 PKELFKLIASKTPKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKL-----PNIRYQLTPTMSITELEQNV   94 (262)
Q Consensus        20 p~~~~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~-----~~~~~~~~~~~~~~~~~~~~   94 (262)
                      ...+.+.+...  ++.+|||+|||+|.++..+++.+.+|+|+|+|+.+++.+++.     .++.+..+|      +.+.+
T Consensus       109 ~~~~~~~~~~~--~~~~vLD~GcG~G~~~~~l~~~g~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d------~~~~~  180 (286)
T 3m70_A          109 HGDVVDAAKII--SPCKVLDLGCGQGRNSLYLSLLGYDVTSWDHNENSIAFLNETKEKENLNISTALYD------INAAN  180 (286)
T ss_dssp             CHHHHHHHHHS--CSCEEEEESCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECC------GGGCC
T ss_pred             HHHHHHHhhcc--CCCcEEEECCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEEec------ccccc
Confidence            35555555432  678899999999999999999999999999999999998753     267777765      55555


Q ss_pred             CCCCceeeEEEccccccCCh---hHHHHHHHHhhcCCCeEEEEEe
Q 037961           95 ATQSSVDLVTIASALHWFDL---PQFYKQVKWVLKKPSGVIAAWT  136 (262)
Q Consensus        95 ~~~~~~D~V~~~~~~~~~d~---~~~l~~~~r~Lk~pgG~l~i~~  136 (262)
                      + +++||+|+++.++||++.   ..+++++.++|+ |||.+++..
T Consensus       181 ~-~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~Lk-pgG~l~i~~  223 (286)
T 3m70_A          181 I-QENYDFIVSTVVFMFLNRERVPSIIKNMKEHTN-VGGYNLIVA  223 (286)
T ss_dssp             C-CSCEEEEEECSSGGGSCGGGHHHHHHHHHHTEE-EEEEEEEEE
T ss_pred             c-cCCccEEEEccchhhCCHHHHHHHHHHHHHhcC-CCcEEEEEE
Confidence            4 788999999999999943   369999999999 999988744

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=99.64  E-value=6.4e-16  Score=126.46  Aligned_cols=100  Identities=17%  Similarity=0.210  Sum_probs=81.4

Q ss_pred             CCCCeEEEEcCcccHhHHHHHhhC--CeEEEEcCCHHHHHHHhc------CCCceEEeCCCCchhhhhhc---cCCCCce
Q 037961           32 PKRNLAWDVGTRSGQAAASLAQIY--QHVIATDTSPKQLKFAIK------LPNIRYQLTPTMSITELEQN---VATQSSV  100 (262)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~------~~~~~~~~~~~~~~~~~~~~---~~~~~~~  100 (262)
                      .+..+|||||||+|.++..+++.+  .+|+|+|+|+.|++.|++      ..++.++.+|      +.++   .+++++|
T Consensus        33 ~~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~D------a~~~l~~~~~~~~~  106 (218)
T 3dxy_A           33 REAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLSNLRVMCHD------AVEVLHKMIPDNSL  106 (218)
T ss_dssp             SCCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTCSSEEEECSC------HHHHHHHHSCTTCE
T ss_pred             CCCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCCCcEEEEECC------HHHHHHHHcCCCCh
Confidence            467889999999999999999874  579999999999998874      2578888776      3332   2578999


Q ss_pred             eeEEEccccccCChh---------HHHHHHHHhhcCCCeEEEEEecC
Q 037961          101 DLVTIASALHWFDLP---------QFYKQVKWVLKKPSGVIAAWTYT  138 (262)
Q Consensus       101 D~V~~~~~~~~~d~~---------~~l~~~~r~Lk~pgG~l~i~~~~  138 (262)
                      |.|+++++..|....         .+++++.++|| |||.|++.+..
T Consensus       107 d~v~~~~~~p~~~~~~~~rr~~~~~~l~~~~r~Lk-pGG~l~i~td~  152 (218)
T 3dxy_A          107 RMVQLFFPDPWHKARHNKRRIVQVPFAELVKSKLQ-LGGVFHMATDW  152 (218)
T ss_dssp             EEEEEESCCCCCSGGGGGGSSCSHHHHHHHHHHEE-EEEEEEEEESC
T ss_pred             heEEEeCCCCccchhhhhhhhhhHHHHHHHHHHcC-CCcEEEEEeCC
Confidence            999999888777322         49999999999 99999986543

>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...

Probab=99.64  E-value=2.8e-16  Score=133.71  Aligned_cols=97  Identities=13%  Similarity=0.115  Sum_probs=74.1

Q ss_pred             CCCeEEEEcCcccHhHHHHHh-hCCeEEEEcCCHHHHHHHhcC-C-------------Cc--------------------
Q 037961           33 KRNLAWDVGTRSGQAAASLAQ-IYQHVIATDTSPKQLKFAIKL-P-------------NI--------------------   77 (262)
Q Consensus        33 ~~~~vlDvGcG~G~~~~~l~~-~~~~v~~vD~s~~~~~~a~~~-~-------------~~--------------------   77 (262)
                      ++.+|||||||+|..+..++. .+.+|+|+|+|+.|++.|++. .             ++                    
T Consensus        71 ~~~~vLDiGcG~G~~~~l~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  150 (289)
T 2g72_A           71 SGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRAR  150 (289)
T ss_dssp             CCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHHH
T ss_pred             CCCeEEEECCCcChHHHHhhccCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHHhh
Confidence            668899999999996554444 378999999999999988752 0             01                    


Q ss_pred             --eEEeCCCCchhhhhh-cc-----CCCCceeeEEEcccccc----C-ChhHHHHHHHHhhcCCCeEEEEEe
Q 037961           78 --RYQLTPTMSITELEQ-NV-----ATQSSVDLVTIASALHW----F-DLPQFYKQVKWVLKKPSGVIAAWT  136 (262)
Q Consensus        78 --~~~~~~~~~~~~~~~-~~-----~~~~~~D~V~~~~~~~~----~-d~~~~l~~~~r~Lk~pgG~l~i~~  136 (262)
                        .++.+      |+.. ++     +++++||+|+++.++||    + ++.++++++.++|| |||+|++..
T Consensus       151 ~~~~~~~------D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~Lk-pGG~l~~~~  215 (289)
T 2g72_A          151 VKRVLPI------DVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLR-PGGHLLLIG  215 (289)
T ss_dssp             EEEEECC------CTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEE-EEEEEEEEE
T ss_pred             hceEEec------ccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcC-CCCEEEEEE
Confidence              12222      3333 33     34567999999999999    6 67889999999999 999999853

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=99.63  E-value=1.4e-15  Score=121.27  Aligned_cols=107  Identities=13%  Similarity=0.094  Sum_probs=85.3

Q ss_pred             HHHHHhhC-CCCCeEEEEcCcccHhHHHHHhhCC-eEEEEcCCHHHHHHHhcC------CCceEEeCCCCchhhhhhcc-
Q 037961           24 FKLIASKT-PKRNLAWDVGTRSGQAAASLAQIYQ-HVIATDTSPKQLKFAIKL------PNIRYQLTPTMSITELEQNV-   94 (262)
Q Consensus        24 ~~~l~~~~-~~~~~vlDvGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~~~~~~-   94 (262)
                      ++.+.... .++.+|||+|||+|.++..++..+. +|+|+|+|+.|++.|+++      .++++.++|      +.++. 
T Consensus        34 ~~~l~~~~~~~~~~vLDlgcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d------~~~~~~  107 (189)
T 3p9n_A           34 FNIVTARRDLTGLAVLDLYAGSGALGLEALSRGAASVLFVESDQRSAAVIARNIEALGLSGATLRRGA------VAAVVA  107 (189)
T ss_dssp             HHHHHHHSCCTTCEEEEETCTTCHHHHHHHHTTCSEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESC------HHHHHH
T ss_pred             HHHHHhccCCCCCEEEEeCCCcCHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEEcc------HHHHHh
Confidence            44444332 4678899999999999998887755 799999999999999863      478888876      33322 


Q ss_pred             -CCCCceeeEEEccccccC--ChhHHHHHHHH--hhcCCCeEEEEEec
Q 037961           95 -ATQSSVDLVTIASALHWF--DLPQFYKQVKW--VLKKPSGVIAAWTY  137 (262)
Q Consensus        95 -~~~~~~D~V~~~~~~~~~--d~~~~l~~~~r--~Lk~pgG~l~i~~~  137 (262)
                       +++++||+|+++..+|+.  +..++++++.+  +|+ |||.|++-..
T Consensus       108 ~~~~~~fD~i~~~~p~~~~~~~~~~~l~~~~~~~~L~-pgG~l~~~~~  154 (189)
T 3p9n_A          108 AGTTSPVDLVLADPPYNVDSADVDAILAALGTNGWTR-EGTVAVVERA  154 (189)
T ss_dssp             HCCSSCCSEEEECCCTTSCHHHHHHHHHHHHHSSSCC-TTCEEEEEEE
T ss_pred             hccCCCccEEEECCCCCcchhhHHHHHHHHHhcCccC-CCeEEEEEec
Confidence             346899999999999885  68889999999  999 9999998443

>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}

Probab=99.63  E-value=6.8e-16  Score=121.96  Aligned_cols=108  Identities=11%  Similarity=0.133  Sum_probs=87.6

Q ss_pred             HHHHHHHHhhCCCCCeEEEEcCcccHhHHHHHhh--CCeEEEEcCCHHHHHHHhcC-----CCceEEeCCCCchhhhhhc
Q 037961           21 KELFKLIASKTPKRNLAWDVGTRSGQAAASLAQI--YQHVIATDTSPKQLKFAIKL-----PNIRYQLTPTMSITELEQN   93 (262)
Q Consensus        21 ~~~~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~-----~~~~~~~~~~~~~~~~~~~   93 (262)
                      +++++.+..++++..+|||+|||+|.++..++..  ..+|+|+|+|+.|++.++++     ...++...+      ....
T Consensus        37 d~fY~~~~~~l~~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~~d------~~~~  110 (200)
T 3fzg_A           37 NDFYTYVFGNIKHVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRFLN------KESD  110 (200)
T ss_dssp             HHHHHHHHHHSCCCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCCSSEEEEEC------CHHH
T ss_pred             HHHHHHHHhhcCCCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCccEEEec------cccc
Confidence            6778888888888999999999999999999765  66999999999999999863     111233232      2222


Q ss_pred             cCCCCceeeEEEccccccC-ChhHHHHHHHHhhcCCCeEEEEEe
Q 037961           94 VATQSSVDLVTIASALHWF-DLPQFYKQVKWVLKKPSGVIAAWT  136 (262)
Q Consensus        94 ~~~~~~~D~V~~~~~~~~~-d~~~~l~~~~r~Lk~pgG~l~i~~  136 (262)
                       .+.++||+|++...+|.+ +.+.++.++.+.|+ |||.++-+.
T Consensus       111 -~~~~~~DvVLa~k~LHlL~~~~~al~~v~~~L~-pggvfISfp  152 (200)
T 3fzg_A          111 -VYKGTYDVVFLLKMLPVLKQQDVNILDFLQLFH-TQNFVISFP  152 (200)
T ss_dssp             -HTTSEEEEEEEETCHHHHHHTTCCHHHHHHTCE-EEEEEEEEE
T ss_pred             -CCCCCcChhhHhhHHHhhhhhHHHHHHHHHHhC-CCCEEEEeC
Confidence             367889999999999999 66668889999999 999998766

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}

Probab=99.63  E-value=1.5e-15  Score=127.95  Aligned_cols=130  Identities=15%  Similarity=0.145  Sum_probs=94.0

Q ss_pred             hHHHHHHHHhhCCCCh-----------HHHHHHHHhh--CCCCCeEEEEcCcccHhHHHHHhhC---CeEEEEcCCHH--
Q 037961            5 FIKQANLYAVARPNYP-----------KELFKLIASK--TPKRNLAWDVGTRSGQAAASLAQIY---QHVIATDTSPK--   66 (262)
Q Consensus         5 F~~~a~~Y~~~rp~yp-----------~~~~~~l~~~--~~~~~~vlDvGcG~G~~~~~l~~~~---~~v~~vD~s~~--   66 (262)
                      |+-.+..|.+....-|           ......+...  .+++.+|||||||+|.++..+++.+   .+|+|+|+|+.  
T Consensus         2 ~~~~~~~y~~~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~   81 (275)
T 3bkx_A            2 MEKRLDYITDLMALGPTANARTIQRRQTAHRLAIAEAWQVKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDY   81 (275)
T ss_dssp             CCHHHHHHHTTSCCCSSTTHHHHHHHHHHHHHHHHHHHTCCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTC
T ss_pred             CcCCHHHHHHhhhcCCCCCchHHHHHHHHHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCcccc
Confidence            3445677877654441           1123333333  3577899999999999999999873   79999999997  


Q ss_pred             ----HHHHHhcC-------CCceEEeCCCCchhhhhhccCCCCceeeEEEccccccC-ChhHHHHHHHHhhcCCCeEEEE
Q 037961           67 ----QLKFAIKL-------PNIRYQLTPTMSITELEQNVATQSSVDLVTIASALHWF-DLPQFYKQVKWVLKKPSGVIAA  134 (262)
Q Consensus        67 ----~~~~a~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~~~~-d~~~~l~~~~r~Lk~pgG~l~i  134 (262)
                          |++.++++       +++.+..++.+   ....+++++++||+|++..++|++ ++..+++.+.++++ |||.+++
T Consensus        82 ~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~---~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~l~~-~gG~l~~  157 (275)
T 3bkx_A           82 GAPLTLGQAWNHLLAGPLGDRLTVHFNTNL---SDDLGPIADQHFDRVVLAHSLWYFASANALALLFKNMAA-VCDHVDV  157 (275)
T ss_dssp             CSSSCHHHHHHHHHTSTTGGGEEEECSCCT---TTCCGGGTTCCCSEEEEESCGGGSSCHHHHHHHHHHHTT-TCSEEEE
T ss_pred             ccHHHHHHHHHHHHhcCCCCceEEEECChh---hhccCCCCCCCEEEEEEccchhhCCCHHHHHHHHHHHhC-CCCEEEE
Confidence                89888753       35777765300   123456678899999999999999 78777777777777 8999998


Q ss_pred             EecC
Q 037961          135 WTYT  138 (262)
Q Consensus       135 ~~~~  138 (262)
                      ....
T Consensus       158 ~~~~  161 (275)
T 3bkx_A          158 AEWS  161 (275)
T ss_dssp             EEEC
T ss_pred             EEec
Confidence            5543

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=99.63  E-value=5.4e-15  Score=119.31  Aligned_cols=111  Identities=21%  Similarity=0.246  Sum_probs=89.7

Q ss_pred             ChHHHHHHHHhhC--CCCCeEEEEcCcccHhHHHHHhhC--CeEEEEcCCHHHHHHHhcC------CCceEEeCCCCchh
Q 037961           19 YPKELFKLIASKT--PKRNLAWDVGTRSGQAAASLAQIY--QHVIATDTSPKQLKFAIKL------PNIRYQLTPTMSIT   88 (262)
Q Consensus        19 yp~~~~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~   88 (262)
                      .++++...+....  .++.+|||+|||+|.++..+++.+  .+|+++|+|+.+++.++++      .++++..++     
T Consensus        24 ~~~~i~~~~l~~l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d-----   98 (204)
T 3e05_A           24 TKQEVRAVTLSKLRLQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAF-----   98 (204)
T ss_dssp             CCHHHHHHHHHHTTCCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECC-----
T ss_pred             ChHHHHHHHHHHcCCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCC-----
Confidence            4566666666655  467899999999999999999987  7999999999999999853      568888776     


Q ss_pred             hhhhccCCCCceeeEEEccccccCChhHHHHHHHHhhcCCCeEEEEEecC
Q 037961           89 ELEQNVATQSSVDLVTIASALHWFDLPQFYKQVKWVLKKPSGVIAAWTYT  138 (262)
Q Consensus        89 ~~~~~~~~~~~~D~V~~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~~  138 (262)
                       +.+.....++||+|++..+++  +...+++++.++|| |||.+++....
T Consensus        99 -~~~~~~~~~~~D~i~~~~~~~--~~~~~l~~~~~~Lk-pgG~l~~~~~~  144 (204)
T 3e05_A           99 -APEGLDDLPDPDRVFIGGSGG--MLEEIIDAVDRRLK-SEGVIVLNAVT  144 (204)
T ss_dssp             -TTTTCTTSCCCSEEEESCCTT--CHHHHHHHHHHHCC-TTCEEEEEECB
T ss_pred             -hhhhhhcCCCCCEEEECCCCc--CHHHHHHHHHHhcC-CCeEEEEEecc
Confidence             322222336799999998877  88899999999999 99999996544

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=99.62  E-value=3.7e-15  Score=120.63  Aligned_cols=113  Identities=17%  Similarity=0.169  Sum_probs=88.0

Q ss_pred             CCCChHHHHHHHHhhC--CCCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhcC------C-CceEEeCCCCc
Q 037961           16 RPNYPKELFKLIASKT--PKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKL------P-NIRYQLTPTMS   86 (262)
Q Consensus        16 rp~yp~~~~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~------~-~~~~~~~~~~~   86 (262)
                      .+..++++...+....  .++.+|||+|||+|.++..+++.+.+|+|+|+|+.|++.|+++      + ++++..++   
T Consensus        36 ~~~~~~~~~~~~l~~l~~~~~~~vLDlGcG~G~~~~~la~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d---  112 (204)
T 3njr_A           36 GQITKSPMRALTLAALAPRRGELLWDIGGGSGSVSVEWCLAGGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGT---  112 (204)
T ss_dssp             SCCCCHHHHHHHHHHHCCCTTCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESC---
T ss_pred             CCCCcHHHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCc---
Confidence            3445566655555543  4678999999999999999999999999999999999998853      4 78888876   


Q ss_pred             hhhhhhccCCCCceeeEEEccccccCChhHHHHHHHHhhcCCCeEEEEEecCC
Q 037961           87 ITELEQNVATQSSVDLVTIASALHWFDLPQFYKQVKWVLKKPSGVIAAWTYTM  139 (262)
Q Consensus        87 ~~~~~~~~~~~~~~D~V~~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~~~  139 (262)
                         +.+.....++||+|++..++   +.+ +++++.++|| |||.|++.....
T Consensus       113 ---~~~~~~~~~~~D~v~~~~~~---~~~-~l~~~~~~Lk-pgG~lv~~~~~~  157 (204)
T 3njr_A          113 ---APAALADLPLPEAVFIGGGG---SQA-LYDRLWEWLA-PGTRIVANAVTL  157 (204)
T ss_dssp             ---TTGGGTTSCCCSEEEECSCC---CHH-HHHHHHHHSC-TTCEEEEEECSH
T ss_pred             ---hhhhcccCCCCCEEEECCcc---cHH-HHHHHHHhcC-CCcEEEEEecCc
Confidence               33322233579999987744   667 9999999999 999999866543

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}

Probab=99.61  E-value=1.6e-15  Score=130.04  Aligned_cols=106  Identities=17%  Similarity=0.129  Sum_probs=87.1

Q ss_pred             HHHHhhCCCCCeEEEEcCcccHhHHHHH--h-hCCeEEEEcCCHHHHHHHhcC-------CCceEEeCCCCchhhhhhcc
Q 037961           25 KLIASKTPKRNLAWDVGTRSGQAAASLA--Q-IYQHVIATDTSPKQLKFAIKL-------PNIRYQLTPTMSITELEQNV   94 (262)
Q Consensus        25 ~~l~~~~~~~~~vlDvGcG~G~~~~~l~--~-~~~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~~~~~~   94 (262)
                      ..+....+++.+|||+|||+|..+..++  . .+.+|+|+|+|+.+++.++++       .++++..+|      +.+++
T Consensus       110 ~~l~~~l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d------~~~~~  183 (305)
T 3ocj_A          110 RALQRHLRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQD------AWKLD  183 (305)
T ss_dssp             HHHHHHCCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECC------GGGCC
T ss_pred             HHHHhhCCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECc------hhcCC
Confidence            3444456788999999999999999985  2 367999999999999999863       237788765      66666


Q ss_pred             CCCCceeeEEEccccccC-ChhH---HHHHHHHhhcCCCeEEEEEecC
Q 037961           95 ATQSSVDLVTIASALHWF-DLPQ---FYKQVKWVLKKPSGVIAAWTYT  138 (262)
Q Consensus        95 ~~~~~~D~V~~~~~~~~~-d~~~---~l~~~~r~Lk~pgG~l~i~~~~  138 (262)
                      ++ ++||+|+++.++|++ ++..   +++++.++|| |||.|++....
T Consensus       184 ~~-~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~Lk-pgG~l~i~~~~  229 (305)
T 3ocj_A          184 TR-EGYDLLTSNGLNIYEPDDARVTELYRRFWQALK-PGGALVTSFLT  229 (305)
T ss_dssp             CC-SCEEEEECCSSGGGCCCHHHHHHHHHHHHHHEE-EEEEEEEECCC
T ss_pred             cc-CCeEEEEECChhhhcCCHHHHHHHHHHHHHhcC-CCeEEEEEecC
Confidence            66 899999999999999 7776   7999999999 99999995544

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=99.61  E-value=4.2e-15  Score=121.11  Aligned_cols=98  Identities=18%  Similarity=0.192  Sum_probs=81.2

Q ss_pred             CCCCeEEEEcCcccHhHHHHHhh--CCeEEEEcCCHHHHHHHhc------CCCceEEeCCCCchhhhhhcc--CCCCcee
Q 037961           32 PKRNLAWDVGTRSGQAAASLAQI--YQHVIATDTSPKQLKFAIK------LPNIRYQLTPTMSITELEQNV--ATQSSVD  101 (262)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~------~~~~~~~~~~~~~~~~~~~~~--~~~~~~D  101 (262)
                      .++.+|||+|||+|.++..+++.  +.+|+|+|+|+.|++.|++      ..++.++.+|      +.+++  +++++||
T Consensus        37 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d------~~~l~~~~~~~~~d  110 (213)
T 2fca_A           37 NDNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNID------ADTLTDVFEPGEVK  110 (213)
T ss_dssp             SCCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCC------GGGHHHHCCTTSCC
T ss_pred             CCCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCCCCEEEEeCC------HHHHHhhcCcCCcC
Confidence            46778999999999999999987  6799999999999999875      2578888776      33333  5678999


Q ss_pred             eEEEccccccCC---------hhHHHHHHHHhhcCCCeEEEEEe
Q 037961          102 LVTIASALHWFD---------LPQFYKQVKWVLKKPSGVIAAWT  136 (262)
Q Consensus       102 ~V~~~~~~~~~d---------~~~~l~~~~r~Lk~pgG~l~i~~  136 (262)
                      .|+++.+.+|..         ...+++++.++|| |||.|++.+
T Consensus       111 ~v~~~~~~p~~~~~~~~~rl~~~~~l~~~~~~Lk-pgG~l~~~t  153 (213)
T 2fca_A          111 RVYLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMG-KGGSIHFKT  153 (213)
T ss_dssp             EEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHHT-TSCEEEEEE
T ss_pred             EEEEECCCCCcCccccccccCcHHHHHHHHHHcC-CCCEEEEEe
Confidence            999988777763         3578999999999 999999865

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=99.61  E-value=3e-15  Score=140.77  Aligned_cols=114  Identities=21%  Similarity=0.222  Sum_probs=91.3

Q ss_pred             CCCChHHHHHHHHhhC--CCCCeEEEEcCcccHhHHHHHhhC---CeEEEEcCCHHHHHHHhc------------CCCce
Q 037961           16 RPNYPKELFKLIASKT--PKRNLAWDVGTRSGQAAASLAQIY---QHVIATDTSPKQLKFAIK------------LPNIR   78 (262)
Q Consensus        16 rp~yp~~~~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~------------~~~~~   78 (262)
                      +|.+....++.+...+  .++.+|||||||+|.++..+++.+   .+|+|+|+|+.|++.|++            .++++
T Consensus       702 sPPL~eqRle~LLelL~~~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVe  781 (950)
T 3htx_A          702 KPPLSKQRVEYALKHIRESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSAT  781 (950)
T ss_dssp             SSCHHHHHHHHHHHHHHHSCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEE
T ss_pred             CchHHHHHHHHHHHHhcccCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceE
Confidence            4444455566665554  377899999999999999999987   799999999999999976            24677


Q ss_pred             EEeCCCCchhhhhhccCCCCceeeEEEccccccCC-hh--HHHHHHHHhhcCCCeEEEEEec
Q 037961           79 YQLTPTMSITELEQNVATQSSVDLVTIASALHWFD-LP--QFYKQVKWVLKKPSGVIAAWTY  137 (262)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~~~~d-~~--~~l~~~~r~Lk~pgG~l~i~~~  137 (262)
                      +.++|      +.++++++++||+|++..++||++ +.  .+++++.++|| || .+++.+.
T Consensus       782 fiqGD------a~dLp~~d~sFDlVV~~eVLeHL~dp~l~~~L~eI~RvLK-PG-~LIISTP  835 (950)
T 3htx_A          782 LYDGS------ILEFDSRLHDVDIGTCLEVIEHMEEDQACEFGEKVLSLFH-PK-LLIVSTP  835 (950)
T ss_dssp             EEESC------TTSCCTTSCSCCEEEEESCGGGSCHHHHHHHHHHHHHTTC-CS-EEEEEEC
T ss_pred             EEECc------hHhCCcccCCeeEEEEeCchhhCChHHHHHHHHHHHHHcC-CC-EEEEEec
Confidence            88765      666777889999999999999994 33  38999999999 99 6666443

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=99.60  E-value=5.3e-15  Score=117.58  Aligned_cols=110  Identities=19%  Similarity=0.160  Sum_probs=88.9

Q ss_pred             HHHHHHHhhC--CCCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhcC------CC--ceEEeCCCCchhhhh
Q 037961           22 ELFKLIASKT--PKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKL------PN--IRYQLTPTMSITELE   91 (262)
Q Consensus        22 ~~~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~------~~--~~~~~~~~~~~~~~~   91 (262)
                      ...+.+....  .++.+|||+|||+|.++..+++.+.+++|+|+|+.+++.+++.      .+  +.+..++      +.
T Consensus        39 ~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d------~~  112 (194)
T 1dus_A           39 KGTKILVENVVVDKDDDILDLGCGYGVIGIALADEVKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSD------LY  112 (194)
T ss_dssp             HHHHHHHHHCCCCTTCEEEEETCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECS------TT
T ss_pred             hHHHHHHHHcccCCCCeEEEeCCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECc------hh
Confidence            4555565555  3678999999999999999999888999999999999998753      33  7888776      22


Q ss_pred             hccCCCCceeeEEEccccccC--ChhHHHHHHHHhhcCCCeEEEEEecCC
Q 037961           92 QNVATQSSVDLVTIASALHWF--DLPQFYKQVKWVLKKPSGVIAAWTYTM  139 (262)
Q Consensus        92 ~~~~~~~~~D~V~~~~~~~~~--d~~~~l~~~~r~Lk~pgG~l~i~~~~~  139 (262)
                      + .+++++||+|+++..+|+.  +...+++++.++|+ |||.+++.....
T Consensus       113 ~-~~~~~~~D~v~~~~~~~~~~~~~~~~l~~~~~~L~-~gG~l~~~~~~~  160 (194)
T 1dus_A          113 E-NVKDRKYNKIITNPPIRAGKEVLHRIIEEGKELLK-DNGEIWVVIQTK  160 (194)
T ss_dssp             T-TCTTSCEEEEEECCCSTTCHHHHHHHHHHHHHHEE-EEEEEEEEEEST
T ss_pred             c-ccccCCceEEEECCCcccchhHHHHHHHHHHHHcC-CCCEEEEEECCC
Confidence            2 2346789999999999984  67789999999999 999999866553

>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15

Probab=99.60  E-value=3.2e-16  Score=131.77  Aligned_cols=98  Identities=14%  Similarity=0.074  Sum_probs=75.3

Q ss_pred             CCCCeEEEEcCcccHhHHHHHhhCC-eEEEEcCCHHHHHHHhcC----C-C-----------------------------
Q 037961           32 PKRNLAWDVGTRSGQAAASLAQIYQ-HVIATDTSPKQLKFAIKL----P-N-----------------------------   76 (262)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~----~-~-----------------------------   76 (262)
                      .++.+|||||||+|.++..++..+. +|+|+|+|+.|++.|++.    + .                             
T Consensus        54 ~~g~~vLDiGCG~G~~~~~~~~~~~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~~~  133 (263)
T 2a14_A           54 LQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRA  133 (263)
T ss_dssp             CCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred             CCCceEEEeCCCccHHHHHHHHhhhcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHHHh
Confidence            3667899999999998887777765 799999999999988752    1 1                             


Q ss_pred             -ce-EEeCCCCchhhhhh-ccC---CCCceeeEEEccccccC-----ChhHHHHHHHHhhcCCCeEEEEEe
Q 037961           77 -IR-YQLTPTMSITELEQ-NVA---TQSSVDLVTIASALHWF-----DLPQFYKQVKWVLKKPSGVIAAWT  136 (262)
Q Consensus        77 -~~-~~~~~~~~~~~~~~-~~~---~~~~~D~V~~~~~~~~~-----d~~~~l~~~~r~Lk~pgG~l~i~~  136 (262)
                       +. +..+|      +.. .++   ..++||+|+++.++|++     +..+++++++++|| |||.|++..
T Consensus       134 ~i~~~~~~D------~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LK-PGG~li~~~  197 (263)
T 2a14_A          134 AVKRVLKCD------VHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLK-PGGHLVTTV  197 (263)
T ss_dssp             HEEEEEECC------TTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEE-EEEEEEEEE
T ss_pred             hhheEEecc------ccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcC-CCcEEEEEE
Confidence             11 45544      222 122   35689999999999985     34579999999999 999999954

>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}

Probab=99.60  E-value=1.4e-14  Score=122.56  Aligned_cols=130  Identities=12%  Similarity=0.124  Sum_probs=92.4

Q ss_pred             HHHHHHhhCCCChH------HHHHHHHhhC---CCCCeEEEEcCcc---cHhHHHHHhh--CCeEEEEcCCHHHHHHHhc
Q 037961            8 QANLYAVARPNYPK------ELFKLIASKT---PKRNLAWDVGTRS---GQAAASLAQI--YQHVIATDTSPKQLKFAIK   73 (262)
Q Consensus         8 ~a~~Y~~~rp~yp~------~~~~~l~~~~---~~~~~vlDvGcG~---G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~   73 (262)
                      .++.|.+.-|.|..      .+++.+...+   .....|||||||+   |.++..+++.  +.+|+++|+|+.|++.|++
T Consensus        43 ~~~~~~~~~p~~~~~a~~~~~~~~~~~~~l~~~~~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~  122 (274)
T 2qe6_A           43 LADYACKHIPGLKESAIENRKVLVRGVRFLAGEAGISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRA  122 (274)
T ss_dssp             HHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHTTTCCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHH
T ss_pred             HHHHHHHhcchhHHHHHHHhHHHHHHHHHHhhccCCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHH
Confidence            45566666666643      2233333332   2347899999999   9888777664  5799999999999999986


Q ss_pred             C----CCceEEeCCCCchhhh----h-hccCCCCceeeEEEccccccC-C--hhHHHHHHHHhhcCCCeEEEEEecC
Q 037961           74 L----PNIRYQLTPTMSITEL----E-QNVATQSSVDLVTIASALHWF-D--LPQFYKQVKWVLKKPSGVIAAWTYT  138 (262)
Q Consensus        74 ~----~~~~~~~~~~~~~~~~----~-~~~~~~~~~D~V~~~~~~~~~-d--~~~~l~~~~r~Lk~pgG~l~i~~~~  138 (262)
                      +    .++.++.+|.......    + .-.++..+||+|+++.++||+ |  +..+++++.++|+ |||.|++....
T Consensus       123 ~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~~d~~~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~-pGG~l~i~~~~  198 (274)
T 2qe6_A          123 LLAKDPNTAVFTADVRDPEYILNHPDVRRMIDFSRPAAIMLVGMLHYLSPDVVDRVVGAYRDALA-PGSYLFMTSLV  198 (274)
T ss_dssp             HHTTCTTEEEEECCTTCHHHHHHSHHHHHHCCTTSCCEEEETTTGGGSCTTTHHHHHHHHHHHSC-TTCEEEEEEEB
T ss_pred             hcCCCCCeEEEEeeCCCchhhhccchhhccCCCCCCEEEEEechhhhCCcHHHHHHHHHHHHhCC-CCcEEEEEEec
Confidence            3    5788998872111101    0 001233589999999999999 5  6789999999999 99999985544

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=99.60  E-value=9.2e-15  Score=114.84  Aligned_cols=117  Identities=17%  Similarity=0.137  Sum_probs=88.1

Q ss_pred             HHHHHHHhhCCCCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhcCCCceEEeCCCCchhhhhhccCCCCcee
Q 037961           22 ELFKLIASKTPKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKLPNIRYQLTPTMSITELEQNVATQSSVD  101 (262)
Q Consensus        22 ~~~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D  101 (262)
                      .+++.+.....++.+|||+|||+|.++..+++.+ +|+|+|+|+.|++.   ..++++.++|      +.+ ++++++||
T Consensus        12 ~l~~~l~~~~~~~~~vLD~GcG~G~~~~~l~~~~-~v~gvD~s~~~~~~---~~~~~~~~~d------~~~-~~~~~~fD   80 (170)
T 3q87_B           12 TLMDALEREGLEMKIVLDLGTSTGVITEQLRKRN-TVVSTDLNIRALES---HRGGNLVRAD------LLC-SINQESVD   80 (170)
T ss_dssp             HHHHHHHHHTCCSCEEEEETCTTCHHHHHHTTTS-EEEEEESCHHHHHT---CSSSCEEECS------TTT-TBCGGGCS
T ss_pred             HHHHHHHhhcCCCCeEEEeccCccHHHHHHHhcC-cEEEEECCHHHHhc---ccCCeEEECC------hhh-hcccCCCC
Confidence            3455543333456799999999999999999999 99999999999988   5678888876      333 34568999


Q ss_pred             eEEEccccccC-Ch---------hHHHHHHHHhhcCCCeEEEEEecCCCcccHHHHHhhcc
Q 037961          102 LVTIASALHWF-DL---------PQFYKQVKWVLKKPSGVIAAWTYTMPEINESVGAVFKP  152 (262)
Q Consensus       102 ~V~~~~~~~~~-d~---------~~~l~~~~r~Lk~pgG~l~i~~~~~~~~~~~~~~~~~~  152 (262)
                      +|+++..+||. +.         ..+++++.+.|  |||.+++....... .+.+.+++.+
T Consensus        81 ~i~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--pgG~l~~~~~~~~~-~~~l~~~l~~  138 (170)
T 3q87_B           81 VVVFNPPYVPDTDDPIIGGGYLGREVIDRFVDAV--TVGMLYLLVIEANR-PKEVLARLEE  138 (170)
T ss_dssp             EEEECCCCBTTCCCTTTBCCGGGCHHHHHHHHHC--CSSEEEEEEEGGGC-HHHHHHHHHH
T ss_pred             EEEECCCCccCCccccccCCcchHHHHHHHHhhC--CCCEEEEEEecCCC-HHHHHHHHHH
Confidence            99999999987 43         46889999998  79999985543322 2444455444

>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*

Probab=99.59  E-value=1.3e-15  Score=133.52  Aligned_cols=120  Identities=10%  Similarity=0.057  Sum_probs=90.6

Q ss_pred             hhhHHHHHHHH--hhC-C-CChHHHHHHHH-hhCCCCCeEEEEcCc------ccHhHHHHHhh---CCeEEEEcCCHHHH
Q 037961            3 ELFIKQANLYA--VAR-P-NYPKELFKLIA-SKTPKRNLAWDVGTR------SGQAAASLAQI---YQHVIATDTSPKQL   68 (262)
Q Consensus         3 ~~F~~~a~~Y~--~~r-p-~yp~~~~~~l~-~~~~~~~~vlDvGcG------~G~~~~~l~~~---~~~v~~vD~s~~~~   68 (262)
                      ..|++.|..|.  +.+ . .| ..+++.++ ....+..+|||||||      +|..+..++..   ..+|+|+|+|+.|.
T Consensus       182 ~~fd~lA~~Y~tDK~~~~h~y-~~~Ye~lL~~l~~~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~  260 (419)
T 3sso_A          182 PDLSELSSRYFTPKFGFLHWF-TPHYDRHFRDYRNQQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH  260 (419)
T ss_dssp             CCHHHHHHHTTCTTBSSSCBC-HHHHHHHHGGGTTSCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG
T ss_pred             ccHHHHHHHhCCCcccccchH-HHHHHHHHHhhcCCCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh
Confidence            35889999995  554 2 25 44555554 444577899999999      66666666653   57999999999984


Q ss_pred             HHHhcCCCceEEeCCCCchhhhhhccCC------CCceeeEEEccccccC-ChhHHHHHHHHhhcCCCeEEEE
Q 037961           69 KFAIKLPNIRYQLTPTMSITELEQNVAT------QSSVDLVTIASALHWF-DLPQFYKQVKWVLKKPSGVIAA  134 (262)
Q Consensus        69 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~D~V~~~~~~~~~-d~~~~l~~~~r~Lk~pgG~l~i  134 (262)
                         ...++++++++|      +.++++.      +++||+|++..+ |+. +..+++++++++|| |||+|++
T Consensus       261 ---~~~~rI~fv~GD------a~dlpf~~~l~~~d~sFDlVisdgs-H~~~d~~~aL~el~rvLK-PGGvlVi  322 (419)
T 3sso_A          261 ---VDELRIRTIQGD------QNDAEFLDRIARRYGPFDIVIDDGS-HINAHVRTSFAALFPHVR-PGGLYVI  322 (419)
T ss_dssp             ---GCBTTEEEEECC------TTCHHHHHHHHHHHCCEEEEEECSC-CCHHHHHHHHHHHGGGEE-EEEEEEE
T ss_pred             ---hcCCCcEEEEec------ccccchhhhhhcccCCccEEEECCc-ccchhHHHHHHHHHHhcC-CCeEEEE
Confidence               345789999887      3333333      578999998755 655 88999999999999 9999998

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=99.59  E-value=9e-15  Score=114.99  Aligned_cols=109  Identities=17%  Similarity=0.163  Sum_probs=83.3

Q ss_pred             HHHHHHHHhhC--CCCCeEEEEcCcccHhHHHHHhh--CCeEEEEcCCHHHHHHHhcC------C-CceEEeCCCCchhh
Q 037961           21 KELFKLIASKT--PKRNLAWDVGTRSGQAAASLAQI--YQHVIATDTSPKQLKFAIKL------P-NIRYQLTPTMSITE   89 (262)
Q Consensus        21 ~~~~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~------~-~~~~~~~~~~~~~~   89 (262)
                      +++...+....  .++.+|||+|||+|.++..++..  +.+|+++|+|+.+++.+++.      + ++ +..++.     
T Consensus        11 ~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~-----   84 (178)
T 3hm2_A           11 QHVRALAISALAPKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRI-AVQQGA-----   84 (178)
T ss_dssp             HHHHHHHHHHHCCCTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCT-----
T ss_pred             HHHHHHHHHHhcccCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecch-----
Confidence            44445555443  46779999999999999999987  67999999999999998852      2 55 666541     


Q ss_pred             hhhccCCCCceeeEEEccccccCChhHHHHHHHHhhcCCCeEEEEEecCC
Q 037961           90 LEQNVATQSSVDLVTIASALHWFDLPQFYKQVKWVLKKPSGVIAAWTYTM  139 (262)
Q Consensus        90 ~~~~~~~~~~~D~V~~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~~~  139 (262)
                      .+.++..+++||+|+++.++|+   ..+++++.++|| |||.+++.....
T Consensus        85 ~~~~~~~~~~~D~i~~~~~~~~---~~~l~~~~~~L~-~gG~l~~~~~~~  130 (178)
T 3hm2_A           85 PRAFDDVPDNPDVIFIGGGLTA---PGVFAAAWKRLP-VGGRLVANAVTV  130 (178)
T ss_dssp             TGGGGGCCSCCSEEEECC-TTC---TTHHHHHHHTCC-TTCEEEEEECSH
T ss_pred             HhhhhccCCCCCEEEECCcccH---HHHHHHHHHhcC-CCCEEEEEeecc
Confidence            1233323378999999999988   889999999999 999999865543

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46

Probab=99.59  E-value=2.3e-15  Score=121.54  Aligned_cols=99  Identities=14%  Similarity=0.020  Sum_probs=79.1

Q ss_pred             CCCeEEEEcCcccHhHHHHHhhC-CeEEEEcCCHHHHHHHhcC--------CCceEEeCCCCchhhhhhcc--CCCCc-e
Q 037961           33 KRNLAWDVGTRSGQAAASLAQIY-QHVIATDTSPKQLKFAIKL--------PNIRYQLTPTMSITELEQNV--ATQSS-V  100 (262)
Q Consensus        33 ~~~~vlDvGcG~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~--------~~~~~~~~~~~~~~~~~~~~--~~~~~-~  100 (262)
                      ++.+|||+|||+|.++..++..+ .+|+|+|+|+.|++.|+++        .++++..+|      +.++.  +++++ |
T Consensus        53 ~~~~vLDlGcGtG~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d------~~~~~~~~~~~~~f  126 (201)
T 2ift_A           53 HQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQS------SLDFLKQPQNQPHF  126 (201)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSC------HHHHTTSCCSSCCE
T ss_pred             CCCeEEEcCCccCHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECC------HHHHHHhhccCCCC
Confidence            56789999999999999877776 5899999999999999853        467787765      43332  23578 9


Q ss_pred             eeEEEccccccCChhHHHHHH--HHhhcCCCeEEEEEecC
Q 037961          101 DLVTIASALHWFDLPQFYKQV--KWVLKKPSGVIAAWTYT  138 (262)
Q Consensus       101 D~V~~~~~~~~~d~~~~l~~~--~r~Lk~pgG~l~i~~~~  138 (262)
                      |+|+++..++.-+...+++.+  .++|+ |||.+++....
T Consensus       127 D~I~~~~~~~~~~~~~~l~~~~~~~~Lk-pgG~l~i~~~~  165 (201)
T 2ift_A          127 DVVFLDPPFHFNLAEQAISLLCENNWLK-PNALIYVETEK  165 (201)
T ss_dssp             EEEEECCCSSSCHHHHHHHHHHHTTCEE-EEEEEEEEEES
T ss_pred             CEEEECCCCCCccHHHHHHHHHhcCccC-CCcEEEEEECC
Confidence            999999887754777889998  67899 99999985543

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20

Probab=99.59  E-value=6.3e-15  Score=122.10  Aligned_cols=95  Identities=23%  Similarity=0.230  Sum_probs=78.5

Q ss_pred             CCCCeEEEEcCcccHhHHHHHh--hCCeEEEEcCCHHHHHHHhcC------CCceEEeCCCCchhhhhhccCC---CCce
Q 037961           32 PKRNLAWDVGTRSGQAAASLAQ--IYQHVIATDTSPKQLKFAIKL------PNIRYQLTPTMSITELEQNVAT---QSSV  100 (262)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~--~~~~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~~~~~~~~---~~~~  100 (262)
                      +++.+|||+|||+|..+..++.  .+.+|+|+|+|+.|++.+++.      .+++++.++      +++++.+   +++|
T Consensus        69 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d------~~~~~~~~~~~~~f  142 (240)
T 1xdz_A           69 NQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDR------AETFGQRKDVRESY  142 (240)
T ss_dssp             GGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESC------HHHHTTCTTTTTCE
T ss_pred             CCCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEecc------HHHhcccccccCCc
Confidence            3678999999999999999985  467999999999999998752      468888765      5555433   5789


Q ss_pred             eeEEEccccccCChhHHHHHHHHhhcCCCeEEEEEe
Q 037961          101 DLVTIASALHWFDLPQFYKQVKWVLKKPSGVIAAWT  136 (262)
Q Consensus       101 D~V~~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~  136 (262)
                      |+|++..   ..+...+++++.++|+ |||.|+++.
T Consensus       143 D~V~~~~---~~~~~~~l~~~~~~Lk-pgG~l~~~~  174 (240)
T 1xdz_A          143 DIVTARA---VARLSVLSELCLPLVK-KNGLFVALK  174 (240)
T ss_dssp             EEEEEEC---CSCHHHHHHHHGGGEE-EEEEEEEEE
T ss_pred             cEEEEec---cCCHHHHHHHHHHhcC-CCCEEEEEe
Confidence            9999865   2488999999999999 999999864

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46

Probab=99.58  E-value=1e-14  Score=113.83  Aligned_cols=119  Identities=17%  Similarity=0.192  Sum_probs=87.6

Q ss_pred             hCCCChHHHHHHHHh----hCCCCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhcC-----CCceEEeCCCC
Q 037961           15 ARPNYPKELFKLIAS----KTPKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKL-----PNIRYQLTPTM   85 (262)
Q Consensus        15 ~rp~yp~~~~~~l~~----~~~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~-----~~~~~~~~~~~   85 (262)
                      .||.. +.+.+.+..    ..+++.+|||+|||+|..+..+++.+.+|+|+|+|+.|++.++++     .++++..++. 
T Consensus        20 ~~~~~-~~~~~~~~~~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~-   97 (171)
T 1ws6_A           20 ARPSP-VRLRKALFDYLRLRYPRRGRFLDPFAGSGAVGLEAASEGWEAVLVEKDPEAVRLLKENVRRTGLGARVVALPV-   97 (171)
T ss_dssp             CCCCC-HHHHHHHHHHHHHHCTTCCEEEEETCSSCHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHHHTCCCEEECSCH-
T ss_pred             CCCCH-HHHHHHHHHHHHhhccCCCeEEEeCCCcCHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHcCCceEEEeccH-
Confidence            45554 344444333    334778999999999999999999988899999999999999863     1678887761 


Q ss_pred             chhh-hhhccCCCCceeeEEEccccccCChhHHHHHHH--HhhcCCCeEEEEEecCC
Q 037961           86 SITE-LEQNVATQSSVDLVTIASALHWFDLPQFYKQVK--WVLKKPSGVIAAWTYTM  139 (262)
Q Consensus        86 ~~~~-~~~~~~~~~~~D~V~~~~~~~~~d~~~~l~~~~--r~Lk~pgG~l~i~~~~~  139 (262)
                        .+ ....+-..++||+|+++..+| -+.+.+++.+.  ++|+ |||.+++.....
T Consensus        98 --~~~~~~~~~~~~~~D~i~~~~~~~-~~~~~~~~~~~~~~~L~-~gG~~~~~~~~~  150 (171)
T 1ws6_A           98 --EVFLPEAKAQGERFTVAFMAPPYA-MDLAALFGELLASGLVE-AGGLYVLQHPKD  150 (171)
T ss_dssp             --HHHHHHHHHTTCCEEEEEECCCTT-SCTTHHHHHHHHHTCEE-EEEEEEEEEETT
T ss_pred             --HHHHHhhhccCCceEEEEECCCCc-hhHHHHHHHHHhhcccC-CCcEEEEEeCCc
Confidence              11 111111235899999998887 66777888888  9999 999999855543

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=99.58  E-value=1.4e-14  Score=118.80  Aligned_cols=105  Identities=15%  Similarity=0.141  Sum_probs=82.9

Q ss_pred             HhhCCCCCeEEEEcCc-ccHhHHHHHhh-CCeEEEEcCCHHHHHHHhcC-----CCceEEeCCCCchhhhhhccCCCCce
Q 037961           28 ASKTPKRNLAWDVGTR-SGQAAASLAQI-YQHVIATDTSPKQLKFAIKL-----PNIRYQLTPTMSITELEQNVATQSSV  100 (262)
Q Consensus        28 ~~~~~~~~~vlDvGcG-~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (262)
                      ....+++.+|||+||| +|.++..++.. +.+|+|+|+|+.+++.|+++     .++++..+|..   ..  .++++++|
T Consensus        50 ~~~~~~~~~vLDlG~G~~G~~~~~la~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~---~~--~~~~~~~f  124 (230)
T 3evz_A           50 KTFLRGGEVALEIGTGHTAMMALMAEKFFNCKVTATEVDEEFFEYARRNIERNNSNVRLVKSNGG---II--KGVVEGTF  124 (230)
T ss_dssp             HTTCCSSCEEEEECCTTTCHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHTTCCCEEEECSSC---SS--TTTCCSCE
T ss_pred             HhhcCCCCEEEEcCCCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEeCCch---hh--hhcccCce
Confidence            4445788999999999 99999999998 89999999999999999853     26888887610   11  12356899


Q ss_pred             eeEEEccccccCC--------------------hhHHHHHHHHhhcCCCeEEEEEecC
Q 037961          101 DLVTIASALHWFD--------------------LPQFYKQVKWVLKKPSGVIAAWTYT  138 (262)
Q Consensus       101 D~V~~~~~~~~~d--------------------~~~~l~~~~r~Lk~pgG~l~i~~~~  138 (262)
                      |+|+++..+++..                    ...+++++.++|| |||.+++....
T Consensus       125 D~I~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk-pgG~l~~~~~~  181 (230)
T 3evz_A          125 DVIFSAPPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLN-PGGKVALYLPD  181 (230)
T ss_dssp             EEEEECCCCC---------------CCSSSCHHHHHHHHHHGGGEE-EEEEEEEEEES
T ss_pred             eEEEECCCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhC-CCeEEEEEecc
Confidence            9999998887652                    3779999999999 99999985543

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=99.58  E-value=1.3e-14  Score=122.98  Aligned_cols=96  Identities=10%  Similarity=0.041  Sum_probs=77.6

Q ss_pred             hCCCCCeEEEEcCcccHhHH-HHHh-hCCeEEEEcCCHHHHHHHhcC------CCceEEeCCCCchhhhhhccCCCCcee
Q 037961           30 KTPKRNLAWDVGTRSGQAAA-SLAQ-IYQHVIATDTSPKQLKFAIKL------PNIRYQLTPTMSITELEQNVATQSSVD  101 (262)
Q Consensus        30 ~~~~~~~vlDvGcG~G~~~~-~l~~-~~~~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~D  101 (262)
                      .++++.+|||||||+|.++. .+++ .+++|+|+|+|+.|++.|+++      .++++++++      +.+++  +++||
T Consensus       119 ~l~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gD------a~~l~--d~~FD  190 (298)
T 3fpf_A          119 RFRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGVDGVNVITGD------ETVID--GLEFD  190 (298)
T ss_dssp             TCCTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTCCSEEEEESC------GGGGG--GCCCS
T ss_pred             CCCCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEECc------hhhCC--CCCcC
Confidence            45788999999999987664 4555 488999999999999999863      578888775      44443  68899


Q ss_pred             eEEEccccccCChhHHHHHHHHhhcCCCeEEEEEe
Q 037961          102 LVTIASALHWFDLPQFYKQVKWVLKKPSGVIAAWT  136 (262)
Q Consensus       102 ~V~~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~  136 (262)
                      +|++...  --+..++++++.++|| |||+|++-.
T Consensus       191 vV~~~a~--~~d~~~~l~el~r~Lk-PGG~Lvv~~  222 (298)
T 3fpf_A          191 VLMVAAL--AEPKRRVFRNIHRYVD-TETRIIYRT  222 (298)
T ss_dssp             EEEECTT--CSCHHHHHHHHHHHCC-TTCEEEEEE
T ss_pred             EEEECCC--ccCHHHHHHHHHHHcC-CCcEEEEEc
Confidence            9998654  2388899999999999 999999844

>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}

Probab=99.58  E-value=6.8e-15  Score=124.70  Aligned_cols=109  Identities=18%  Similarity=0.155  Sum_probs=79.2

Q ss_pred             HHHHHHHhhC--CCCCeEEEEcCcccHhHHHHHhhCC-eEEEEcCCHHHHHHH-hcCCCceEEeCCCCchhhhhhccCCC
Q 037961           22 ELFKLIASKT--PKRNLAWDVGTRSGQAAASLAQIYQ-HVIATDTSPKQLKFA-IKLPNIRYQLTPTMSITELEQNVATQ   97 (262)
Q Consensus        22 ~~~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a-~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (262)
                      ++...+....  .++.+|||+|||||.+|..+++.++ +|+|+|+|+.|++.+ ++.+++.............+.  ++.
T Consensus        72 Kl~~~l~~~~~~~~g~~vLDiGcGTG~~t~~L~~~ga~~V~aVDvs~~mL~~a~r~~~rv~~~~~~ni~~l~~~~--l~~  149 (291)
T 3hp7_A           72 KLEKALAVFNLSVEDMITIDIGASTGGFTDVMLQNGAKLVYAVDVGTNQLVWKLRQDDRVRSMEQYNFRYAEPVD--FTE  149 (291)
T ss_dssp             HHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSSSCSCHHHHTCTTEEEECSCCGGGCCGGG--CTT
T ss_pred             HHHHHHHhcCCCccccEEEecCCCccHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCcccceecccCceecchhh--CCC
Confidence            4444444332  3567999999999999999999875 899999999999984 444555444322111111222  244


Q ss_pred             CceeeEEEccccccCChhHHHHHHHHhhcCCCeEEEEE
Q 037961           98 SSVDLVTIASALHWFDLPQFYKQVKWVLKKPSGVIAAW  135 (262)
Q Consensus        98 ~~~D~V~~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~  135 (262)
                      .+||+|++..++|+  ...++.++.|+|| |||.|++.
T Consensus       150 ~~fD~v~~d~sf~s--l~~vL~e~~rvLk-pGG~lv~l  184 (291)
T 3hp7_A          150 GLPSFASIDVSFIS--LNLILPALAKILV-DGGQVVAL  184 (291)
T ss_dssp             CCCSEEEECCSSSC--GGGTHHHHHHHSC-TTCEEEEE
T ss_pred             CCCCEEEEEeeHhh--HHHHHHHHHHHcC-cCCEEEEE
Confidence            56999999988775  5889999999999 99999884

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=99.58  E-value=9.5e-15  Score=118.78  Aligned_cols=98  Identities=19%  Similarity=0.179  Sum_probs=72.3

Q ss_pred             CCCCeEEEEcCcccHhHHHHHhhC--CeEEEEcCCHHHH----HHHhcCCCceEEeCCCCchhhhhh-ccCCCCceeeEE
Q 037961           32 PKRNLAWDVGTRSGQAAASLAQIY--QHVIATDTSPKQL----KFAIKLPNIRYQLTPTMSITELEQ-NVATQSSVDLVT  104 (262)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~~--~~v~~vD~s~~~~----~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~D~V~  104 (262)
                      +++.+|||+|||+|..+..+++..  .+|+|+|+|+.|+    +.+++..++.++.+|..   +... .++. ++||+|+
T Consensus        56 ~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~~~v~~~~~d~~---~~~~~~~~~-~~fD~V~  131 (210)
T 1nt2_A           56 RGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDAS---KPWKYSGIV-EKVDLIY  131 (210)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTT---CGGGTTTTC-CCEEEEE
T ss_pred             CCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcCCCeEEEEcCCC---Cchhhcccc-cceeEEE
Confidence            577899999999999999998874  6899999999865    44555667887776511   1111 2333 7899999


Q ss_pred             EccccccCChhHHHHHHHHhhcCCCeEEEEE
Q 037961          105 IASALHWFDLPQFYKQVKWVLKKPSGVIAAW  135 (262)
Q Consensus       105 ~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~  135 (262)
                      ++...+ .+...+++++.++|| |||.|++.
T Consensus       132 ~~~~~~-~~~~~~l~~~~r~Lk-pgG~l~i~  160 (210)
T 1nt2_A          132 QDIAQK-NQIEILKANAEFFLK-EKGEVVIM  160 (210)
T ss_dssp             ECCCST-THHHHHHHHHHHHEE-EEEEEEEE
T ss_pred             EeccCh-hHHHHHHHHHHHHhC-CCCEEEEE
Confidence            984222 123346899999999 99999985

>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*

Probab=99.58  E-value=2.5e-15  Score=125.66  Aligned_cols=98  Identities=17%  Similarity=0.112  Sum_probs=79.9

Q ss_pred             CCCCeEEEEcCcccHhHHHHHhhCC-eEEEEcCCHHHHHHHhcC---CC-------------------------------
Q 037961           32 PKRNLAWDVGTRSGQAAASLAQIYQ-HVIATDTSPKQLKFAIKL---PN-------------------------------   76 (262)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~---~~-------------------------------   76 (262)
                      .++.+|||+|||+|..+..++..+. +|+|+|+|+.|++.+++.   ..                               
T Consensus        55 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  134 (265)
T 2i62_A           55 VKGELLIDIGSGPTIYQLLSACESFTEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLRR  134 (265)
T ss_dssp             CCEEEEEEESCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHHH
T ss_pred             cCCCEEEEECCCccHHHHHHhhcccCeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHhhh
Confidence            3567899999999999999998887 999999999999998752   11                               


Q ss_pred             -c-eEEeCCCCchhhhhhc-cCCC---CceeeEEEccccc----cC-ChhHHHHHHHHhhcCCCeEEEEEe
Q 037961           77 -I-RYQLTPTMSITELEQN-VATQ---SSVDLVTIASALH----WF-DLPQFYKQVKWVLKKPSGVIAAWT  136 (262)
Q Consensus        77 -~-~~~~~~~~~~~~~~~~-~~~~---~~~D~V~~~~~~~----~~-d~~~~l~~~~r~Lk~pgG~l~i~~  136 (262)
                       + .+..++      +.+. ++++   ++||+|++..++|    +. ++..+++++.++|| |||.|++..
T Consensus       135 ~v~~~~~~d------~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~Lk-pgG~li~~~  198 (265)
T 2i62_A          135 AIKQVLKCD------VTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLK-PGGFLVMVD  198 (265)
T ss_dssp             HEEEEEECC------TTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEE-EEEEEEEEE
T ss_pred             hheeEEEee------eccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCC-CCcEEEEEe
Confidence             5 677665      3222 2234   7899999999999    55 67789999999999 999999855

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46

Probab=99.57  E-value=6.6e-15  Score=116.71  Aligned_cols=120  Identities=18%  Similarity=0.132  Sum_probs=90.1

Q ss_pred             hCCCChHHHHHHHHhhC---CCCCeEEEEcCcccHhHHHHHhhC-CeEEEEcCCHHHHHHHhcC-------CCceEEeCC
Q 037961           15 ARPNYPKELFKLIASKT---PKRNLAWDVGTRSGQAAASLAQIY-QHVIATDTSPKQLKFAIKL-------PNIRYQLTP   83 (262)
Q Consensus        15 ~rp~yp~~~~~~l~~~~---~~~~~vlDvGcG~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~   83 (262)
                      .||.. +.+.+.+...+   .++.+|||+|||+|.++..+++.+ .+|+|+|+|+.|++.|+++       +++++..+|
T Consensus        24 ~rp~~-~~~~~~~~~~l~~~~~~~~vLD~GcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d  102 (187)
T 2fhp_A           24 TRPTT-DKVKESIFNMIGPYFDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMD  102 (187)
T ss_dssp             SCCCC-HHHHHHHHHHHCSCCSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESC
T ss_pred             cCcCH-HHHHHHHHHHHHhhcCCCCEEEeCCccCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECc
Confidence            46654 56666665544   367899999999999999988875 5899999999999998853       357888876


Q ss_pred             CCchhhhhhccCCCCceeeEEEccccccCChhHHHHHH--HHhhcCCCeEEEEEecC
Q 037961           84 TMSITELEQNVATQSSVDLVTIASALHWFDLPQFYKQV--KWVLKKPSGVIAAWTYT  138 (262)
Q Consensus        84 ~~~~~~~~~~~~~~~~~D~V~~~~~~~~~d~~~~l~~~--~r~Lk~pgG~l~i~~~~  138 (262)
                      ...  ....++.++++||+|+++..++..+....++.+  .++|+ |||.+++....
T Consensus       103 ~~~--~~~~~~~~~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~L~-~gG~l~~~~~~  156 (187)
T 2fhp_A          103 ANR--ALEQFYEEKLQFDLVLLDPPYAKQEIVSQLEKMLERQLLT-NEAVIVCETDK  156 (187)
T ss_dssp             HHH--HHHHHHHTTCCEEEEEECCCGGGCCHHHHHHHHHHTTCEE-EEEEEEEEEET
T ss_pred             HHH--HHHHHHhcCCCCCEEEECCCCCchhHHHHHHHHHHhcccC-CCCEEEEEeCC
Confidence            100  011122236789999999887766888888888  88999 99999985544

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=99.57  E-value=1.4e-14  Score=119.07  Aligned_cols=118  Identities=14%  Similarity=0.118  Sum_probs=89.6

Q ss_pred             HHhhCCCChHHHHHHHHhh-----CCCCCeEEEEcCcccHhHHHHHhh-C--CeEEEEcCCHHHHHHHhc----CCCceE
Q 037961           12 YAVARPNYPKELFKLIASK-----TPKRNLAWDVGTRSGQAAASLAQI-Y--QHVIATDTSPKQLKFAIK----LPNIRY   79 (262)
Q Consensus        12 Y~~~rp~yp~~~~~~l~~~-----~~~~~~vlDvGcG~G~~~~~l~~~-~--~~v~~vD~s~~~~~~a~~----~~~~~~   79 (262)
                      |..+-|.. .++...|+.-     ++++.+|||+|||+|.++..+++. |  .+|+|+|+++.|++.+++    .+++..
T Consensus        52 ~r~w~p~r-sklaa~i~~gl~~l~ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~~ni~~  130 (233)
T 4df3_A           52 YREWNAYR-SKLAAALLKGLIELPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDRRNIFP  130 (233)
T ss_dssp             EEECCTTT-CHHHHHHHTTCSCCCCCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTCTTEEE
T ss_pred             eeeECCCc-hHHHHHHHhchhhcCCCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhhcCeeE
Confidence            33444433 3455555442     268999999999999999999986 3  579999999999998864    468888


Q ss_pred             EeCCCCchhhhhhccCCCCceeeEEEccccccCChhHHHHHHHHhhcCCCeEEEEE
Q 037961           80 QLTPTMSITELEQNVATQSSVDLVTIASALHWFDLPQFYKQVKWVLKKPSGVIAAW  135 (262)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~  135 (262)
                      +.++.   .+.+..+...+++|+|++....++ ++..++.++.++|| |||.+++.
T Consensus       131 V~~d~---~~p~~~~~~~~~vDvVf~d~~~~~-~~~~~l~~~~r~LK-pGG~lvI~  181 (233)
T 4df3_A          131 ILGDA---RFPEKYRHLVEGVDGLYADVAQPE-QAAIVVRNARFFLR-DGGYMLMA  181 (233)
T ss_dssp             EESCT---TCGGGGTTTCCCEEEEEECCCCTT-HHHHHHHHHHHHEE-EEEEEEEE
T ss_pred             EEEec---cCccccccccceEEEEEEeccCCh-hHHHHHHHHHHhcc-CCCEEEEE
Confidence            87762   334556667789999997654433 67789999999999 99999984

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=99.57  E-value=1.7e-14  Score=116.73  Aligned_cols=106  Identities=16%  Similarity=0.105  Sum_probs=85.0

Q ss_pred             HHHHHHHHhhC--CCCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhcC------CCceEEeCCCCchhhhhh
Q 037961           21 KELFKLIASKT--PKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKL------PNIRYQLTPTMSITELEQ   92 (262)
Q Consensus        21 ~~~~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~~~~   92 (262)
                      +.+...+....  .++.+|||+|||+|..+..+++.+.+|+++|+|+.+++.++++      .++.+..+|      +..
T Consensus        63 ~~~~~~~~~~l~~~~~~~vLdiG~G~G~~~~~la~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d------~~~  136 (210)
T 3lbf_A           63 PYMVARMTELLELTPQSRVLEIGTGSGYQTAILAHLVQHVCSVERIKGLQWQARRRLKNLDLHNVSTRHGD------GWQ  136 (210)
T ss_dssp             HHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESC------GGG
T ss_pred             HHHHHHHHHhcCCCCCCEEEEEcCCCCHHHHHHHHhCCEEEEEecCHHHHHHHHHHHHHcCCCceEEEECC------ccc
Confidence            44555555554  4778999999999999999999999999999999999998852      467888775      333


Q ss_pred             ccCCCCceeeEEEccccccCChhHHHHHHHHhhcCCCeEEEEEecC
Q 037961           93 NVATQSSVDLVTIASALHWFDLPQFYKQVKWVLKKPSGVIAAWTYT  138 (262)
Q Consensus        93 ~~~~~~~~D~V~~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~~  138 (262)
                      ...++++||+|++..++|++..     ++.++|| |||+|++....
T Consensus       137 ~~~~~~~~D~i~~~~~~~~~~~-----~~~~~L~-pgG~lv~~~~~  176 (210)
T 3lbf_A          137 GWQARAPFDAIIVTAAPPEIPT-----ALMTQLD-EGGILVLPVGE  176 (210)
T ss_dssp             CCGGGCCEEEEEESSBCSSCCT-----HHHHTEE-EEEEEEEEECS
T ss_pred             CCccCCCccEEEEccchhhhhH-----HHHHhcc-cCcEEEEEEcC
Confidence            3334678999999999999843     5899999 99999985433

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46

Probab=99.57  E-value=8.4e-15  Score=118.28  Aligned_cols=115  Identities=12%  Similarity=-0.003  Sum_probs=85.0

Q ss_pred             hCCCChHHHHHHHHhhC---CCCCeEEEEcCcccHhHHHHHhhC-CeEEEEcCCHHHHHHHhcC------CCceEEeCCC
Q 037961           15 ARPNYPKELFKLIASKT---PKRNLAWDVGTRSGQAAASLAQIY-QHVIATDTSPKQLKFAIKL------PNIRYQLTPT   84 (262)
Q Consensus        15 ~rp~yp~~~~~~l~~~~---~~~~~vlDvGcG~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~------~~~~~~~~~~   84 (262)
                      .||.. +.+.+.+...+   .++.+|||+|||+|.++..++..+ .+|+++|+|+.|++.|+++      .++++..+| 
T Consensus        34 ~rp~~-~~~~~~l~~~l~~~~~~~~vLDlgcG~G~~~~~l~~~~~~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D-  111 (202)
T 2fpo_A           34 LRPTT-DRVRETLFNWLAPVIVDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKAGNARVVNSN-  111 (202)
T ss_dssp             ----C-HHHHHHHHHHHHHHHTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSC-
T ss_pred             CCCCH-HHHHHHHHHHHHhhcCCCeEEEeCCCcCHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEECC-
Confidence            35544 44444444333   156789999999999999887776 4999999999999999853      367888765 


Q ss_pred             Cchhhhhh-ccCCCCceeeEEEccccccCChhHHHHHHHH--hhcCCCeEEEEEec
Q 037961           85 MSITELEQ-NVATQSSVDLVTIASALHWFDLPQFYKQVKW--VLKKPSGVIAAWTY  137 (262)
Q Consensus        85 ~~~~~~~~-~~~~~~~~D~V~~~~~~~~~d~~~~l~~~~r--~Lk~pgG~l~i~~~  137 (262)
                           +.+ ++..+++||+|+++..+|+-+...+++.+.+  +|+ |||.|++...
T Consensus       112 -----~~~~~~~~~~~fD~V~~~~p~~~~~~~~~l~~l~~~~~L~-pgG~l~i~~~  161 (202)
T 2fpo_A          112 -----AMSFLAQKGTPHNIVFVDPPFRRGLLEETINLLEDNGWLA-DEALIYVESE  161 (202)
T ss_dssp             -----HHHHHSSCCCCEEEEEECCSSSTTTHHHHHHHHHHTTCEE-EEEEEEEEEE
T ss_pred             -----HHHHHhhcCCCCCEEEECCCCCCCcHHHHHHHHHhcCccC-CCcEEEEEEC
Confidence                 433 3445678999999988776578888999876  599 9999998543

>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*

Probab=99.57  E-value=1.3e-14  Score=122.34  Aligned_cols=95  Identities=20%  Similarity=0.302  Sum_probs=73.9

Q ss_pred             CCCeEEEEcCcccH----hHHHHHhh------CCeEEEEcCCHHHHHHHhcCC---------------------------
Q 037961           33 KRNLAWDVGTRSGQ----AAASLAQI------YQHVIATDTSPKQLKFAIKLP---------------------------   75 (262)
Q Consensus        33 ~~~~vlDvGcG~G~----~~~~l~~~------~~~v~~vD~s~~~~~~a~~~~---------------------------   75 (262)
                      +..+|||+|||||.    ++..|++.      +.+|+|+|+|+.|++.|++..                           
T Consensus       105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~  184 (274)
T 1af7_A          105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG  184 (274)
T ss_dssp             SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred             CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence            34689999999998    56666654      358999999999999998631                           


Q ss_pred             ----------CceEEeCCCCchhhhhhccCC-CCceeeEEEccccccCChh---HHHHHHHHhhcCCCeEEEE
Q 037961           76 ----------NIRYQLTPTMSITELEQNVAT-QSSVDLVTIASALHWFDLP---QFYKQVKWVLKKPSGVIAA  134 (262)
Q Consensus        76 ----------~~~~~~~~~~~~~~~~~~~~~-~~~~D~V~~~~~~~~~d~~---~~l~~~~r~Lk~pgG~l~i  134 (262)
                                ++.|..++      +.+.+++ .++||+|+|.++++|++++   ++++++.++|+ |||.|++
T Consensus       185 ~~~v~~~lr~~V~F~~~d------l~~~~~~~~~~fDlI~crnvliyf~~~~~~~vl~~~~~~L~-pgG~L~l  250 (274)
T 1af7_A          185 LVRVRQELANYVEFSSVN------LLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLK-PDGLLFA  250 (274)
T ss_dssp             EEEECHHHHTTEEEEECC------TTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEE-EEEEEEE
T ss_pred             ceeechhhcccCeEEecc------cCCCCCCcCCCeeEEEECCchHhCCHHHHHHHHHHHHHHhC-CCcEEEE
Confidence                      24444443      4443343 5789999999999999654   69999999999 9999988

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=99.57  E-value=9.5e-15  Score=117.88  Aligned_cols=107  Identities=22%  Similarity=0.146  Sum_probs=87.0

Q ss_pred             HHHHHHHHhhCCCCCeEEEEcCcccHhHHHHHhhCC-eEEEEcCCHHHHHHHhcC------CCceEEeCCCCchhhhhhc
Q 037961           21 KELFKLIASKTPKRNLAWDVGTRSGQAAASLAQIYQ-HVIATDTSPKQLKFAIKL------PNIRYQLTPTMSITELEQN   93 (262)
Q Consensus        21 ~~~~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~~~~~   93 (262)
                      ..+.+.+....+++.+|||+|||+|.++..+++.+. +|+|+|+|+.|++.|+++      .++++..++      +.. 
T Consensus        48 ~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d------~~~-  120 (205)
T 3grz_A           48 QLAMLGIERAMVKPLTVADVGTGSGILAIAAHKLGAKSVLATDISDESMTAAEENAALNGIYDIALQKTS------LLA-  120 (205)
T ss_dssp             HHHHHHHHHHCSSCCEEEEETCTTSHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCCCEEEESS------TTT-
T ss_pred             HHHHHHHHHhccCCCEEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEecc------ccc-
Confidence            445666776677889999999999999999998755 999999999999998853      348888776      222 


Q ss_pred             cCCCCceeeEEEccccccCChhHHHHHHHHhhcCCCeEEEEEecC
Q 037961           94 VATQSSVDLVTIASALHWFDLPQFYKQVKWVLKKPSGVIAAWTYT  138 (262)
Q Consensus        94 ~~~~~~~D~V~~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~~  138 (262)
                       ..+++||+|+++..+|++  ..+++++.++|+ |||.+++....
T Consensus       121 -~~~~~fD~i~~~~~~~~~--~~~l~~~~~~L~-~gG~l~~~~~~  161 (205)
T 3grz_A          121 -DVDGKFDLIVANILAEIL--LDLIPQLDSHLN-EDGQVIFSGID  161 (205)
T ss_dssp             -TCCSCEEEEEEESCHHHH--HHHGGGSGGGEE-EEEEEEEEEEE
T ss_pred             -cCCCCceEEEECCcHHHH--HHHHHHHHHhcC-CCCEEEEEecC
Confidence             245789999999888774  778999999999 99999985443

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=99.56  E-value=4.1e-15  Score=130.68  Aligned_cols=106  Identities=13%  Similarity=0.119  Sum_probs=82.7

Q ss_pred             HHHHHHhhC--CCCCeEEEEcCcccHhHHHHHhh-CC-eEEEEcCCHHHHHHHhc---------------CCCceEEeCC
Q 037961           23 LFKLIASKT--PKRNLAWDVGTRSGQAAASLAQI-YQ-HVIATDTSPKQLKFAIK---------------LPNIRYQLTP   83 (262)
Q Consensus        23 ~~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~~---------------~~~~~~~~~~   83 (262)
                      .+..++..+  .++.+|||||||+|..+..++.. ++ +|+|||+|+.|++.|++               ..+++++++|
T Consensus       161 ~i~~il~~l~l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~GD  240 (438)
T 3uwp_A          161 LVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGD  240 (438)
T ss_dssp             HHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEECC
T ss_pred             HHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEECc
Confidence            344444443  57889999999999999999864 55 59999999999988864               1568888877


Q ss_pred             CCchhhhhhccCCC--CceeeEEEccccccCChhHHHHHHHHhhcCCCeEEEEE
Q 037961           84 TMSITELEQNVATQ--SSVDLVTIASALHWFDLPQFYKQVKWVLKKPSGVIAAW  135 (262)
Q Consensus        84 ~~~~~~~~~~~~~~--~~~D~V~~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~  135 (262)
                            +.+.++++  ..||+|+++..+++-+....+.+++|+|| |||+|++.
T Consensus       241 ------~~~lp~~d~~~~aDVVf~Nn~~F~pdl~~aL~Ei~RvLK-PGGrIVss  287 (438)
T 3uwp_A          241 ------FLSEEWRERIANTSVIFVNNFAFGPEVDHQLKERFANMK-EGGRIVSS  287 (438)
T ss_dssp             ------TTSHHHHHHHHTCSEEEECCTTCCHHHHHHHHHHHTTSC-TTCEEEES
T ss_pred             ------ccCCccccccCCccEEEEcccccCchHHHHHHHHHHcCC-CCcEEEEe
Confidence                  33333322  36999999888776688889999999999 99999984

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=99.56  E-value=2.3e-14  Score=114.85  Aligned_cols=104  Identities=15%  Similarity=0.086  Sum_probs=81.7

Q ss_pred             HhhCCCCCeEEEEcCcccHhHHHHHhh---CCeEEEEcCCHHHHHHHhcC-------CCceEEeCCCCchhhhhhcc-CC
Q 037961           28 ASKTPKRNLAWDVGTRSGQAAASLAQI---YQHVIATDTSPKQLKFAIKL-------PNIRYQLTPTMSITELEQNV-AT   96 (262)
Q Consensus        28 ~~~~~~~~~vlDvGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~~~~~~-~~   96 (262)
                      ....+++.+|||+|||+|..+..+++.   ..+|+|+|+|+.+++.|+++       .++++..+|      +.+++ ..
T Consensus        17 ~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d------~~~~~~~~   90 (197)
T 3eey_A           17 KMFVKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDG------HQNMDKYI   90 (197)
T ss_dssp             HHHCCTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSC------GGGGGGTC
T ss_pred             HhcCCCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECC------HHHHhhhc
Confidence            334577889999999999999999886   25999999999999999863       467888765      44443 45


Q ss_pred             CCceeeEEEccccc-----cC-----ChhHHHHHHHHhhcCCCeEEEEEecC
Q 037961           97 QSSVDLVTIASALH-----WF-----DLPQFYKQVKWVLKKPSGVIAAWTYT  138 (262)
Q Consensus        97 ~~~~D~V~~~~~~~-----~~-----d~~~~l~~~~r~Lk~pgG~l~i~~~~  138 (262)
                      +++||+|+++.++.     +.     +...+++++.++|| |||++++..+.
T Consensus        91 ~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk-~gG~l~~~~~~  141 (197)
T 3eey_A           91 DCPVKAVMFNLGYLPSGDHSISTRPETTIQALSKAMELLV-TGGIITVVIYY  141 (197)
T ss_dssp             CSCEEEEEEEESBCTTSCTTCBCCHHHHHHHHHHHHHHEE-EEEEEEEEECC
T ss_pred             cCCceEEEEcCCcccCcccccccCcccHHHHHHHHHHhCc-CCCEEEEEEcc
Confidence            68899999987661     11     23469999999999 99999986554

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=99.56  E-value=2.4e-14  Score=116.39  Aligned_cols=98  Identities=19%  Similarity=0.263  Sum_probs=81.2

Q ss_pred             CCCCeEEEEcCcccHhHHHHHhh--CCeEEEEcCCHHHHHHHhcC------CCceEEeCCCCchhhhhhcc--CCCCcee
Q 037961           32 PKRNLAWDVGTRSGQAAASLAQI--YQHVIATDTSPKQLKFAIKL------PNIRYQLTPTMSITELEQNV--ATQSSVD  101 (262)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~~~~~~--~~~~~~D  101 (262)
                      +++.+|||+|||+|.++..++..  +.+++|+|+|+.+++.|+++      .++.++.++      +.+++  +++++||
T Consensus        40 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d------~~~~~~~~~~~~~D  113 (214)
T 1yzh_A           40 NDNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVD------GSDLTDYFEDGEID  113 (214)
T ss_dssp             SCCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECC------SSCGGGTSCTTCCS
T ss_pred             CCCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCC------HHHHHhhcCCCCCC
Confidence            45788999999999999999987  47999999999999998752      578888876      33333  5678899


Q ss_pred             eEEEccccccCC---------hhHHHHHHHHhhcCCCeEEEEEe
Q 037961          102 LVTIASALHWFD---------LPQFYKQVKWVLKKPSGVIAAWT  136 (262)
Q Consensus       102 ~V~~~~~~~~~d---------~~~~l~~~~r~Lk~pgG~l~i~~  136 (262)
                      +|+++...+|..         ...+++++.++|+ |||.|++.+
T Consensus       114 ~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk-pgG~l~~~~  156 (214)
T 1yzh_A          114 RLYLNFSDPWPKKRHEKRRLTYKTFLDTFKRILP-ENGEIHFKT  156 (214)
T ss_dssp             EEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHSC-TTCEEEEEE
T ss_pred             EEEEECCCCccccchhhhccCCHHHHHHHHHHcC-CCcEEEEEe
Confidence            999998877763         2579999999999 999998854

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*

Probab=99.55  E-value=3.6e-16  Score=129.45  Aligned_cols=94  Identities=16%  Similarity=0.102  Sum_probs=81.1

Q ss_pred             CCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhcC-------CCceEEeCCCCchhhhhhccCCCCceeeEEE
Q 037961           33 KRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKL-------PNIRYQLTPTMSITELEQNVATQSSVDLVTI  105 (262)
Q Consensus        33 ~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~  105 (262)
                      ++.+|||+|||+|..+..++..+.+|+|+|+|+.|++.|+++       .++.+..+|      +.+++ ++++||+|++
T Consensus        78 ~~~~vLD~gcG~G~~~~~la~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d------~~~~~-~~~~~D~v~~  150 (241)
T 3gdh_A           78 KCDVVVDAFCGVGGNTIQFALTGMRVIAIDIDPVKIALARNNAEVYGIADKIEFICGD------FLLLA-SFLKADVVFL  150 (241)
T ss_dssp             CCSEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESC------HHHHG-GGCCCSEEEE
T ss_pred             CCCEEEECccccCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECC------hHHhc-ccCCCCEEEE
Confidence            678999999999999999999999999999999999998853       368888775      44444 5678999999


Q ss_pred             ccccccC-ChhHHHHHHHHhhcCCCeEEEE
Q 037961          106 ASALHWF-DLPQFYKQVKWVLKKPSGVIAA  134 (262)
Q Consensus       106 ~~~~~~~-d~~~~l~~~~r~Lk~pgG~l~i  134 (262)
                      +.++|+. +....+.++.++|+ |||.+++
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~L~-pgG~~i~  179 (241)
T 3gdh_A          151 SPPWGGPDYATAETFDIRTMMS-PDGFEIF  179 (241)
T ss_dssp             CCCCSSGGGGGSSSBCTTTSCS-SCHHHHH
T ss_pred             CCCcCCcchhhhHHHHHHhhcC-CcceeHH
Confidence            9999999 66668889999999 9999665

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=99.55  E-value=5.9e-15  Score=116.25  Aligned_cols=100  Identities=11%  Similarity=-0.016  Sum_probs=79.3

Q ss_pred             CCCCeEEEEcCcccHhHHHHHhhC-CeEEEEcCCHHHHHHHhcC-------CCceEEeCCCCchhhhhh-ccCCCCceee
Q 037961           32 PKRNLAWDVGTRSGQAAASLAQIY-QHVIATDTSPKQLKFAIKL-------PNIRYQLTPTMSITELEQ-NVATQSSVDL  102 (262)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~~~~-~~~~~~~~D~  102 (262)
                      .++.+|||+|||+|..+..+++.+ .+|+|+|+|+.|++.|+++       .++.+..+|      +.+ ++..+++||+
T Consensus        30 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d------~~~~~~~~~~~fD~  103 (177)
T 2esr_A           30 FNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKME------AERAIDCLTGRFDL  103 (177)
T ss_dssp             CCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSC------HHHHHHHBCSCEEE
T ss_pred             cCCCeEEEeCCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECc------HHHhHHhhcCCCCE
Confidence            467899999999999999999885 5999999999999998852       257777765      333 2223467999


Q ss_pred             EEEccccccCChhHHHHHHH--HhhcCCCeEEEEEecC
Q 037961          103 VTIASALHWFDLPQFYKQVK--WVLKKPSGVIAAWTYT  138 (262)
Q Consensus       103 V~~~~~~~~~d~~~~l~~~~--r~Lk~pgG~l~i~~~~  138 (262)
                      |+++..+++.+...+++.+.  ++|+ |||.+++....
T Consensus       104 i~~~~~~~~~~~~~~~~~l~~~~~L~-~gG~l~~~~~~  140 (177)
T 2esr_A          104 VFLDPPYAKETIVATIEALAAKNLLS-EQVMVVCETDK  140 (177)
T ss_dssp             EEECCSSHHHHHHHHHHHHHHTTCEE-EEEEEEEEEET
T ss_pred             EEECCCCCcchHHHHHHHHHhCCCcC-CCcEEEEEECC
Confidence            99998876556677888887  9999 99999985544

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=99.55  E-value=6.4e-15  Score=115.24  Aligned_cols=105  Identities=14%  Similarity=0.085  Sum_probs=80.2

Q ss_pred             CCCCCeEEEEcCcccHhHHHHHhh---CCeEEEEcCCHHHHHHHhcCCCceEEeCCCCchhhhhhcc--CCCCceeeEEE
Q 037961           31 TPKRNLAWDVGTRSGQAAASLAQI---YQHVIATDTSPKQLKFAIKLPNIRYQLTPTMSITELEQNV--ATQSSVDLVTI  105 (262)
Q Consensus        31 ~~~~~~vlDvGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~D~V~~  105 (262)
                      ..++.+|||+|||+|.++..+++.   +.+++++|+++ |++    .+++.+..++.......+.++  +++++||+|++
T Consensus        20 ~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~----~~~~~~~~~d~~~~~~~~~~~~~~~~~~~D~i~~   94 (180)
T 1ej0_A           20 FKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDP----IVGVDFLQGDFRDELVMKALLERVGDSKVQVVMS   94 (180)
T ss_dssp             CCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCC----CTTEEEEESCTTSHHHHHHHHHHHTTCCEEEEEE
T ss_pred             CCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-ccc----cCcEEEEEcccccchhhhhhhccCCCCceeEEEE
Confidence            457789999999999999999887   37999999999 753    267888877621111111111  46789999999


Q ss_pred             ccccccC-Ch-----------hHHHHHHHHhhcCCCeEEEEEecCCCc
Q 037961          106 ASALHWF-DL-----------PQFYKQVKWVLKKPSGVIAAWTYTMPE  141 (262)
Q Consensus       106 ~~~~~~~-d~-----------~~~l~~~~r~Lk~pgG~l~i~~~~~~~  141 (262)
                      +..+||+ +.           ..+++++.++|+ |||.+++.......
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~-~gG~l~~~~~~~~~  141 (180)
T 1ej0_A           95 DMAPNMSGTPAVDIPRAMYLVELALEMCRDVLA-PGGSFVVKVFQGEG  141 (180)
T ss_dssp             CCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEE-EEEEEEEEEESSTT
T ss_pred             CCCccccCCCccchHHHHHHHHHHHHHHHHHcC-CCcEEEEEEecCCc
Confidence            9999988 55           689999999999 99999986655433

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}

Probab=99.55  E-value=1.6e-14  Score=117.56  Aligned_cols=106  Identities=18%  Similarity=0.297  Sum_probs=80.9

Q ss_pred             ChHHHHHHHHhhCCCCCeEEEEcCcccHhHHHHHhh--CCeEEEEcCCHHHHHHH----hc------CCCceEEeCCCCc
Q 037961           19 YPKELFKLIASKTPKRNLAWDVGTRSGQAAASLAQI--YQHVIATDTSPKQLKFA----IK------LPNIRYQLTPTMS   86 (262)
Q Consensus        19 yp~~~~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a----~~------~~~~~~~~~~~~~   86 (262)
                      +....++.+.  ..++.+|||+|||+|.++..+++.  +.+|+|+|+|+.|++.+    ++      .+++.+.++|   
T Consensus        15 ~~~~~~~~l~--~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d---   89 (218)
T 3mq2_A           15 FSDAEFEQLR--SQYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWAT---   89 (218)
T ss_dssp             CCHHHHHHHH--TTSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECC---
T ss_pred             cCHHHHHHhh--ccCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecc---
Confidence            3345555553  356788999999999999999998  67999999999988852    22      2478888765   


Q ss_pred             hhhhhhccCCCCceeeEEEcc---cc--ccC-ChhHHHHHHHHhhcCCCeEEEE
Q 037961           87 ITELEQNVATQSSVDLVTIAS---AL--HWF-DLPQFYKQVKWVLKKPSGVIAA  134 (262)
Q Consensus        87 ~~~~~~~~~~~~~~D~V~~~~---~~--~~~-d~~~~l~~~~r~Lk~pgG~l~i  134 (262)
                         ++++++++++ |.|....   ..  ||+ |+..+++++.++|| |||.|++
T Consensus        90 ---~~~l~~~~~~-d~v~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk-pgG~l~~  138 (218)
T 3mq2_A           90 ---AERLPPLSGV-GELHVLMPWGSLLRGVLGSSPEMLRGMAAVCR-PGASFLV  138 (218)
T ss_dssp             ---STTCCSCCCE-EEEEEESCCHHHHHHHHTSSSHHHHHHHHTEE-EEEEEEE
T ss_pred             ---hhhCCCCCCC-CEEEEEccchhhhhhhhccHHHHHHHHHHHcC-CCcEEEE
Confidence               5666666666 7766433   22  256 88999999999999 9999998

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}

Probab=99.54  E-value=3e-14  Score=114.43  Aligned_cols=111  Identities=14%  Similarity=0.221  Sum_probs=80.9

Q ss_pred             CCCChHHHHHHHHhh--CCCCCeEEEEcCcccHhHHHHHhh----CCeEEEEcCCHHHHHHHhcCCCceEEeCCCCchhh
Q 037961           16 RPNYPKELFKLIASK--TPKRNLAWDVGTRSGQAAASLAQI----YQHVIATDTSPKQLKFAIKLPNIRYQLTPTMSITE   89 (262)
Q Consensus        16 rp~yp~~~~~~l~~~--~~~~~~vlDvGcG~G~~~~~l~~~----~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~   89 (262)
                      |++-.-++.+.+..+  .+++.+|||+|||+|.++..+++.    ..+|+|+|+|+.+     ..+++.+.+++      
T Consensus         3 ~~r~~~kl~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~-----~~~~v~~~~~d------   71 (201)
T 2plw_A            3 RSRAAYKLIELDNKYLFLKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD-----PIPNVYFIQGE------   71 (201)
T ss_dssp             CSTTHHHHHHHHHHHCCCCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC-----CCTTCEEEECC------
T ss_pred             chHHHHHHHHHHHHcCCCCCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC-----CCCCceEEEcc------
Confidence            333334455544443  467789999999999999999986    3689999999832     24578888876      


Q ss_pred             hhhcc-------------------------CCCCceeeEEEccccccC-----Chh-------HHHHHHHHhhcCCCeEE
Q 037961           90 LEQNV-------------------------ATQSSVDLVTIASALHWF-----DLP-------QFYKQVKWVLKKPSGVI  132 (262)
Q Consensus        90 ~~~~~-------------------------~~~~~~D~V~~~~~~~~~-----d~~-------~~l~~~~r~Lk~pgG~l  132 (262)
                      +.+.+                         +++++||+|+++.++||.     |..       .+++++.++|| |||.|
T Consensus        72 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~Lk-pgG~l  150 (201)
T 2plw_A           72 IGKDNMNNIKNINYIDNMNNNSVDYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYIN-IGGTY  150 (201)
T ss_dssp             TTTTSSCCC-----------CHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEE-EEEEE
T ss_pred             ccchhhhhhccccccccccchhhHHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHcc-CCCEE
Confidence            11111                         356789999999998884     222       37889999999 99999


Q ss_pred             EEEecC
Q 037961          133 AAWTYT  138 (262)
Q Consensus       133 ~i~~~~  138 (262)
                      ++..+.
T Consensus       151 v~~~~~  156 (201)
T 2plw_A          151 IVKMYL  156 (201)
T ss_dssp             EEEEEC
T ss_pred             EEEEeC
Confidence            985444

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}

Probab=99.54  E-value=3e-14  Score=117.76  Aligned_cols=99  Identities=13%  Similarity=0.134  Sum_probs=77.3

Q ss_pred             CCCCeEEEEcCcccHhHHHHHhh--CCeEEEEcCCHHHHHHHhc------------CCCceEEeCCCCchhhhhh-cc--
Q 037961           32 PKRNLAWDVGTRSGQAAASLAQI--YQHVIATDTSPKQLKFAIK------------LPNIRYQLTPTMSITELEQ-NV--   94 (262)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~------------~~~~~~~~~~~~~~~~~~~-~~--   94 (262)
                      .+..+|||||||+|.++..+++.  ..+|+|+|+|+.|++.|++            ..++.++.+|      +.. ++  
T Consensus        45 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d------~~~~l~~~  118 (235)
T 3ckk_A           45 QAQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSN------AMKHLPNF  118 (235)
T ss_dssp             -CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECC------TTTCHHHH
T ss_pred             CCCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECc------HHHhhhhh
Confidence            45678999999999999999987  4689999999999997752            3578888876      332 33  


Q ss_pred             CCCCceeeEEEccccccCC---------hhHHHHHHHHhhcCCCeEEEEEec
Q 037961           95 ATQSSVDLVTIASALHWFD---------LPQFYKQVKWVLKKPSGVIAAWTY  137 (262)
Q Consensus        95 ~~~~~~D~V~~~~~~~~~d---------~~~~l~~~~r~Lk~pgG~l~i~~~  137 (262)
                      +++++||.|++...-.|..         ...+++++.++|| |||.|++.+.
T Consensus       119 ~~~~~~D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~Lk-pGG~l~~~td  169 (235)
T 3ckk_A          119 FYKGQLTKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLR-VGGLVYTITD  169 (235)
T ss_dssp             CCTTCEEEEEEESCC-----------CCCHHHHHHHHHHEE-EEEEEEEEES
T ss_pred             CCCcCeeEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCC-CCCEEEEEeC
Confidence            5788999999887766652         2479999999999 9999998553

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*

Probab=99.54  E-value=2.6e-14  Score=124.49  Aligned_cols=94  Identities=20%  Similarity=0.154  Sum_probs=78.4

Q ss_pred             CCCCeEEEEcCcccHhHHHHHhhCC-eEEEEcCCHHHHHHHhcC-------CCceEEeCCCCchhhhhhccCCCCceeeE
Q 037961           32 PKRNLAWDVGTRSGQAAASLAQIYQ-HVIATDTSPKQLKFAIKL-------PNIRYQLTPTMSITELEQNVATQSSVDLV  103 (262)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~D~V  103 (262)
                      .++.+|||+|||+|.++..+++.+. +|+|+|+|+ |++.|++.       .+++++.++      ++++++++++||+|
T Consensus        63 ~~~~~VLDiGcGtG~ls~~la~~g~~~v~gvD~s~-~~~~a~~~~~~~~~~~~i~~~~~d------~~~~~~~~~~~D~I  135 (340)
T 2fyt_A           63 FKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSE-ILYQAMDIIRLNKLEDTITLIKGK------IEEVHLPVEKVDVI  135 (340)
T ss_dssp             TTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESC------TTTSCCSCSCEEEE
T ss_pred             cCCCEEEEeeccCcHHHHHHHHcCCCEEEEEChHH-HHHHHHHHHHHcCCCCcEEEEEee------HHHhcCCCCcEEEE
Confidence            5678999999999999999999875 899999996 99988752       578888765      55566677899999


Q ss_pred             EEcc---ccccC-ChhHHHHHHHHhhcCCCeEEE
Q 037961          104 TIAS---ALHWF-DLPQFYKQVKWVLKKPSGVIA  133 (262)
Q Consensus       104 ~~~~---~~~~~-d~~~~l~~~~r~Lk~pgG~l~  133 (262)
                      ++..   .+++. +...++.++.++|| |||.++
T Consensus       136 vs~~~~~~l~~~~~~~~~l~~~~~~Lk-pgG~li  168 (340)
T 2fyt_A          136 ISEWMGYFLLFESMLDSVLYAKNKYLA-KGGSVY  168 (340)
T ss_dssp             EECCCBTTBTTTCHHHHHHHHHHHHEE-EEEEEE
T ss_pred             EEcCchhhccCHHHHHHHHHHHHhhcC-CCcEEE
Confidence            9876   44555 56779999999999 999987

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}

Probab=99.53  E-value=8.9e-15  Score=118.23  Aligned_cols=122  Identities=17%  Similarity=0.104  Sum_probs=75.9

Q ss_pred             HHHHHHHHhhC---CCCCeEEEEcCcccHhHHHHHhh--CCeEEEEcCCHHHHHHHhcCC-----CceEEeCCCCchhhh
Q 037961           21 KELFKLIASKT---PKRNLAWDVGTRSGQAAASLAQI--YQHVIATDTSPKQLKFAIKLP-----NIRYQLTPTMSITEL   90 (262)
Q Consensus        21 ~~~~~~l~~~~---~~~~~vlDvGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~-----~~~~~~~~~~~~~~~   90 (262)
                      +.+++.+...+   .++.+|||+|||+|..+..+++.  +.+++|+|+|+.|++.++++.     ++++..      +|+
T Consensus        15 ~~~~~~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~------~d~   88 (215)
T 4dzr_A           15 EVLVEEAIRFLKRMPSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGAVVDWAA------ADG   88 (215)
T ss_dssp             HHHHHHHHHHHTTCCTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC-------------------CCH------HHH
T ss_pred             HHHHHHHHHHhhhcCCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhCCceEEEE------cch
Confidence            34566666554   56789999999999999999998  559999999999999998642     234443      455


Q ss_pred             hhccCCC-----CceeeEEEccccccC-Ch--------------------------hHHHHHHHHhhcCCCeEEEEEecC
Q 037961           91 EQNVATQ-----SSVDLVTIASALHWF-DL--------------------------PQFYKQVKWVLKKPSGVIAAWTYT  138 (262)
Q Consensus        91 ~~~~~~~-----~~~D~V~~~~~~~~~-d~--------------------------~~~l~~~~r~Lk~pgG~l~i~~~~  138 (262)
                      .+ ++++     ++||+|+++..+++. +.                          ..+++++.++|| |||.+++....
T Consensus        89 ~~-~~~~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk-pgG~l~~~~~~  166 (215)
T 4dzr_A           89 IE-WLIERAERGRPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLA-RGRAGVFLEVG  166 (215)
T ss_dssp             HH-HHHHHHHTTCCBSEEEECCCCCC------------------------CTTHHHHHHHTCCGGGBC-SSSEEEEEECT
T ss_pred             Hh-hhhhhhhccCcccEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhc-CCCeEEEEEEC
Confidence            54 3344     899999998777654 21                          678899999999 99995544433


Q ss_pred             CCcccHHHHHhhc
Q 037961          139 MPEINESVGAVFK  151 (262)
Q Consensus       139 ~~~~~~~~~~~~~  151 (262)
                      ... .+.+.+++.
T Consensus       167 ~~~-~~~~~~~l~  178 (215)
T 4dzr_A          167 HNQ-ADEVARLFA  178 (215)
T ss_dssp             TSC-HHHHHHHTG
T ss_pred             Ccc-HHHHHHHHH
Confidence            222 244444444

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=99.53  E-value=5.5e-14  Score=115.40  Aligned_cols=106  Identities=20%  Similarity=0.164  Sum_probs=84.4

Q ss_pred             HHHHHHHHhhC--CCCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhcC----CCceEEeCCCCchhhhhhcc
Q 037961           21 KELFKLIASKT--PKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKL----PNIRYQLTPTMSITELEQNV   94 (262)
Q Consensus        21 ~~~~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~----~~~~~~~~~~~~~~~~~~~~   94 (262)
                      +.+...+....  .++.+|||+|||+|..+..+++.+.+|+|+|+|+.+++.+++.    .++.+..++      +....
T Consensus        56 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~d------~~~~~  129 (231)
T 1vbf_A           56 LNLGIFMLDELDLHKGQKVLEIGTGIGYYTALIAEIVDKVVSVEINEKMYNYASKLLSYYNNIKLILGD------GTLGY  129 (231)
T ss_dssp             HHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHHHTTCSSEEEEESC------GGGCC
T ss_pred             HHHHHHHHHhcCCCCCCEEEEEcCCCCHHHHHHHHHcCEEEEEeCCHHHHHHHHHHHhhcCCeEEEECC------ccccc
Confidence            45566665554  4678999999999999999999999999999999999999863    267788765      33311


Q ss_pred             CCCCceeeEEEccccccCChhHHHHHHHHhhcCCCeEEEEEecC
Q 037961           95 ATQSSVDLVTIASALHWFDLPQFYKQVKWVLKKPSGVIAAWTYT  138 (262)
Q Consensus        95 ~~~~~~D~V~~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~~  138 (262)
                      ..+++||+|++..++|++.     .++.++|+ |||.+++....
T Consensus       130 ~~~~~fD~v~~~~~~~~~~-----~~~~~~L~-pgG~l~~~~~~  167 (231)
T 1vbf_A          130 EEEKPYDRVVVWATAPTLL-----CKPYEQLK-EGGIMILPIGV  167 (231)
T ss_dssp             GGGCCEEEEEESSBBSSCC-----HHHHHTEE-EEEEEEEEECS
T ss_pred             ccCCCccEEEECCcHHHHH-----HHHHHHcC-CCcEEEEEEcC
Confidence            2457899999999999885     36899999 99999985543

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=99.52  E-value=6.5e-14  Score=123.44  Aligned_cols=121  Identities=13%  Similarity=0.140  Sum_probs=88.9

Q ss_pred             HHHHHhhCC--CCCeEEEEcCcccHhHHHHHhh--CCeEEEEcCCHHHHHHHhcC---------CCceEEeCCCCchhhh
Q 037961           24 FKLIASKTP--KRNLAWDVGTRSGQAAASLAQI--YQHVIATDTSPKQLKFAIKL---------PNIRYQLTPTMSITEL   90 (262)
Q Consensus        24 ~~~l~~~~~--~~~~vlDvGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~---------~~~~~~~~~~~~~~~~   90 (262)
                      ...++..++  ++.+|||+|||+|.++..+++.  +.+|+|+|+|+.|++.++++         .++++..+|      +
T Consensus       211 ~~~ll~~l~~~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D------~  284 (375)
T 4dcm_A          211 ARFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINN------A  284 (375)
T ss_dssp             HHHHHHTCCCSCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECS------T
T ss_pred             HHHHHHhCcccCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEech------h
Confidence            344555553  4478999999999999999998  57999999999999998863         136667765      2


Q ss_pred             hhccCCCCceeeEEEccccccC----C--hhHHHHHHHHhhcCCCeEEEEEecCCCcccHHHHHhhcc
Q 037961           91 EQNVATQSSVDLVTIASALHWF----D--LPQFYKQVKWVLKKPSGVIAAWTYTMPEINESVGAVFKP  152 (262)
Q Consensus        91 ~~~~~~~~~~D~V~~~~~~~~~----d--~~~~l~~~~r~Lk~pgG~l~i~~~~~~~~~~~~~~~~~~  152 (262)
                      .+ ++++++||+|+++..+|+.    +  ..++++++.++|| |||.+++.......+...+.+.+..
T Consensus       285 ~~-~~~~~~fD~Ii~nppfh~~~~~~~~~~~~~l~~~~~~Lk-pgG~l~iv~n~~~~~~~~l~~~fg~  350 (375)
T 4dcm_A          285 LS-GVEPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLK-INGELYIVANRHLDYFHKLKKIFGN  350 (375)
T ss_dssp             TT-TCCTTCEEEEEECCCC-------CCHHHHHHHHHHHHEE-EEEEEEEEEETTSCHHHHHHHHHSC
T ss_pred             hc-cCCCCCeeEEEECCCcccCcccCHHHHHHHHHHHHHhCC-CCcEEEEEEECCcCHHHHHHHhcCC
Confidence            22 3467899999999999853    2  2258999999999 9999999766655444445555443

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=99.52  E-value=7.1e-14  Score=110.79  Aligned_cols=109  Identities=22%  Similarity=0.263  Sum_probs=87.0

Q ss_pred             hHHHHHHHHhhC--CCCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhcC-------CCceEEeCCCCchhhh
Q 037961           20 PKELFKLIASKT--PKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKL-------PNIRYQLTPTMSITEL   90 (262)
Q Consensus        20 p~~~~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~~   90 (262)
                      ++.+...+....  .++.+|||+|||+|..+..+++.+.+|+++|+|+.+++.+++.       .++.+..++      +
T Consensus        18 ~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d------~   91 (192)
T 1l3i_A           18 AMEVRCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGD------A   91 (192)
T ss_dssp             CHHHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESC------H
T ss_pred             hHHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHhcCEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecC------H
Confidence            466666666543  5778999999999999999999889999999999999998752       467777765      3


Q ss_pred             hhccCCC-CceeeEEEccccccCChhHHHHHHHHhhcCCCeEEEEEecC
Q 037961           91 EQNVATQ-SSVDLVTIASALHWFDLPQFYKQVKWVLKKPSGVIAAWTYT  138 (262)
Q Consensus        91 ~~~~~~~-~~~D~V~~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~~  138 (262)
                      .. +++. ++||+|++...++  +...+++++.++|+ |||.+++....
T Consensus        92 ~~-~~~~~~~~D~v~~~~~~~--~~~~~l~~~~~~l~-~gG~l~~~~~~  136 (192)
T 1l3i_A           92 PE-ALCKIPDIDIAVVGGSGG--ELQEILRIIKDKLK-PGGRIIVTAIL  136 (192)
T ss_dssp             HH-HHTTSCCEEEEEESCCTT--CHHHHHHHHHHTEE-EEEEEEEEECB
T ss_pred             HH-hcccCCCCCEEEECCchH--HHHHHHHHHHHhcC-CCcEEEEEecC
Confidence            33 1222 5899999987765  45889999999999 99999986554

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=99.52  E-value=7.5e-14  Score=114.82  Aligned_cols=102  Identities=20%  Similarity=0.215  Sum_probs=79.1

Q ss_pred             HHHHHHH---HhhC--CCCCeEEEEcCcccHhHHHHHhhC--CeEEEEcCCHHHHHHHhc----CCCceEEeCCCCchhh
Q 037961           21 KELFKLI---ASKT--PKRNLAWDVGTRSGQAAASLAQIY--QHVIATDTSPKQLKFAIK----LPNIRYQLTPTMSITE   89 (262)
Q Consensus        21 ~~~~~~l---~~~~--~~~~~vlDvGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~----~~~~~~~~~~~~~~~~   89 (262)
                      .++...+   +...  .++.+|||+|||+|..+..+++..  .+|+|+|+|+.|++.+++    ..++.++.++      
T Consensus        57 ~~~~~~i~~~l~~~~~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~v~~~~~d------  130 (230)
T 1fbn_A           57 SKLAAAIIKGLKVMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGD------  130 (230)
T ss_dssp             CHHHHHHHTTCCCCCCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECC------
T ss_pred             hHHHHHHHhcccccCCCCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcCCCeEEEECC------
Confidence            3444555   3333  467899999999999999999874  799999999999988764    3578887776      


Q ss_pred             hhh----ccCCCCceeeEEEccccccC-Ch---hHHHHHHHHhhcCCCeEEEEE
Q 037961           90 LEQ----NVATQSSVDLVTIASALHWF-DL---PQFYKQVKWVLKKPSGVIAAW  135 (262)
Q Consensus        90 ~~~----~~~~~~~~D~V~~~~~~~~~-d~---~~~l~~~~r~Lk~pgG~l~i~  135 (262)
                      +..    .++. ++||+|+     |++ ++   ..+++++.++|| |||.+++.
T Consensus       131 ~~~~~~~~~~~-~~~D~v~-----~~~~~~~~~~~~l~~~~~~Lk-pgG~l~i~  177 (230)
T 1fbn_A          131 ANKPQEYANIV-EKVDVIY-----EDVAQPNQAEILIKNAKWFLK-KGGYGMIA  177 (230)
T ss_dssp             TTCGGGGTTTS-CCEEEEE-----ECCCSTTHHHHHHHHHHHHEE-EEEEEEEE
T ss_pred             CCCcccccccC-ccEEEEE-----EecCChhHHHHHHHHHHHhCC-CCcEEEEE
Confidence            222    4444 7899999     444 56   668999999999 99999984

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*

Probab=99.51  E-value=2.3e-14  Score=117.69  Aligned_cols=98  Identities=16%  Similarity=0.126  Sum_probs=72.2

Q ss_pred             CCCCCeEEEEcCcccHhHHHHHh--hCCeEEEEcCC-HHHHHHH---hcC------CCceEEeCCCCchhhhhhccCC-C
Q 037961           31 TPKRNLAWDVGTRSGQAAASLAQ--IYQHVIATDTS-PKQLKFA---IKL------PNIRYQLTPTMSITELEQNVAT-Q   97 (262)
Q Consensus        31 ~~~~~~vlDvGcG~G~~~~~l~~--~~~~v~~vD~s-~~~~~~a---~~~------~~~~~~~~~~~~~~~~~~~~~~-~   97 (262)
                      ..++.+|||||||+|.++..+++  .+.+|+|+|+| +.|++.|   ++.      +++.+..++      +++++.. .
T Consensus        22 ~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d------~~~l~~~~~   95 (225)
T 3p2e_A           22 GQFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAA------AESLPFELK   95 (225)
T ss_dssp             TTCSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCB------TTBCCGGGT
T ss_pred             CCCCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcC------HHHhhhhcc
Confidence            35778999999999999999984  46789999999 7787776   532      567787765      4444311 2


Q ss_pred             CceeeEEEcccc-----ccC-ChhHHHHHHHHhhcCCCeEEEEE
Q 037961           98 SSVDLVTIASAL-----HWF-DLPQFYKQVKWVLKKPSGVIAAW  135 (262)
Q Consensus        98 ~~~D~V~~~~~~-----~~~-d~~~~l~~~~r~Lk~pgG~l~i~  135 (262)
                      ..+|.|.++..+     |+. +...++++++|+|| |||.|++.
T Consensus        96 d~v~~i~~~~~~~~~~~~~~~~~~~~l~~~~r~Lk-pGG~l~i~  138 (225)
T 3p2e_A           96 NIADSISILFPWGTLLEYVIKPNRDILSNVADLAK-KEAHFEFV  138 (225)
T ss_dssp             TCEEEEEEESCCHHHHHHHHTTCHHHHHHHHTTEE-EEEEEEEE
T ss_pred             CeEEEEEEeCCCcHHhhhhhcchHHHHHHHHHhcC-CCcEEEEE
Confidence            456666665533     222 55679999999999 99999983

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*

Probab=99.51  E-value=4.7e-14  Score=123.33  Aligned_cols=95  Identities=21%  Similarity=0.220  Sum_probs=78.6

Q ss_pred             CCCCeEEEEcCcccHhHHHHHhhCC-eEEEEcCCHHHHHHHhcC-------CCceEEeCCCCchhhhhhccCCCCceeeE
Q 037961           32 PKRNLAWDVGTRSGQAAASLAQIYQ-HVIATDTSPKQLKFAIKL-------PNIRYQLTPTMSITELEQNVATQSSVDLV  103 (262)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~D~V  103 (262)
                      .++.+|||+|||+|.++..+++.+. +|+|+|+| +|++.|++.       .+++++.++      ++++++++++||+|
T Consensus        65 ~~~~~VLDvGcG~G~~~~~la~~g~~~v~gvD~s-~~l~~a~~~~~~~~~~~~v~~~~~d------~~~~~~~~~~fD~I  137 (349)
T 3q7e_A           65 FKDKVVLDVGSGTGILCMFAAKAGARKVIGIECS-SISDYAVKIVKANKLDHVVTIIKGK------VEEVELPVEKVDII  137 (349)
T ss_dssp             HTTCEEEEESCTTSHHHHHHHHTTCSEEEEEECS-THHHHHHHHHHHTTCTTTEEEEESC------TTTCCCSSSCEEEE
T ss_pred             CCCCEEEEEeccchHHHHHHHHCCCCEEEEECcH-HHHHHHHHHHHHcCCCCcEEEEECc------HHHccCCCCceEEE
Confidence            4678999999999999999999865 99999999 599988752       237888765      66667778899999


Q ss_pred             EEccc---cccC-ChhHHHHHHHHhhcCCCeEEEE
Q 037961          104 TIASA---LHWF-DLPQFYKQVKWVLKKPSGVIAA  134 (262)
Q Consensus       104 ~~~~~---~~~~-d~~~~l~~~~r~Lk~pgG~l~i  134 (262)
                      ++...   +++. +.+.++.++.++|| |||.++.
T Consensus       138 is~~~~~~l~~~~~~~~~l~~~~r~Lk-pgG~li~  171 (349)
T 3q7e_A          138 ISEWMGYCLFYESMLNTVLHARDKWLA-PDGLIFP  171 (349)
T ss_dssp             EECCCBBTBTBTCCHHHHHHHHHHHEE-EEEEEES
T ss_pred             EEccccccccCchhHHHHHHHHHHhCC-CCCEEcc
Confidence            99765   3444 77789999999999 9999874

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=99.51  E-value=1.7e-13  Score=114.21  Aligned_cols=111  Identities=23%  Similarity=0.317  Sum_probs=87.7

Q ss_pred             CCCChHHHHHHHHhhC--CCCCeEEEEcCcccHhHHHHHhh---CCeEEEEcCCHHHHHHHhcC-------CCceEEeCC
Q 037961           16 RPNYPKELFKLIASKT--PKRNLAWDVGTRSGQAAASLAQI---YQHVIATDTSPKQLKFAIKL-------PNIRYQLTP   83 (262)
Q Consensus        16 rp~yp~~~~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~   83 (262)
                      .+.||... ..+....  .++.+|||+|||+|.++..+++.   +.+|+++|+|+.+++.|++.       .++.+..+|
T Consensus        78 ~~~~~~~~-~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d  156 (258)
T 2pwy_A           78 TPTYPKDA-SAMVTLLDLAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGK  156 (258)
T ss_dssp             CCCCHHHH-HHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESC
T ss_pred             ccccchHH-HHHHHHcCCCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECc
Confidence            45666554 3444333  57789999999999999999987   67999999999999998753       467777765


Q ss_pred             CCchhhhhhccCCCCceeeEEEccccccCChhHHHHHHHHhhcCCCeEEEEEecC
Q 037961           84 TMSITELEQNVATQSSVDLVTIASALHWFDLPQFYKQVKWVLKKPSGVIAAWTYT  138 (262)
Q Consensus        84 ~~~~~~~~~~~~~~~~~D~V~~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~~  138 (262)
                            +.+.++++++||+|++.    +-++..+++++.++|+ |||.+++....
T Consensus       157 ------~~~~~~~~~~~D~v~~~----~~~~~~~l~~~~~~L~-~gG~l~~~~~~  200 (258)
T 2pwy_A          157 ------LEEAELEEAAYDGVALD----LMEPWKVLEKAALALK-PDRFLVAYLPN  200 (258)
T ss_dssp             ------GGGCCCCTTCEEEEEEE----SSCGGGGHHHHHHHEE-EEEEEEEEESC
T ss_pred             ------hhhcCCCCCCcCEEEEC----CcCHHHHHHHHHHhCC-CCCEEEEEeCC
Confidence                  55555677899999983    3478899999999999 99999997644

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=99.51  E-value=5.9e-14  Score=117.57  Aligned_cols=97  Identities=13%  Similarity=0.130  Sum_probs=77.6

Q ss_pred             CCCeEEEEcCcccHhHHHHHhhCC-eEEEEcCCHHHHHHHhcC-------CCceEEeCCCCchhhhhhcc--CCCCceee
Q 037961           33 KRNLAWDVGTRSGQAAASLAQIYQ-HVIATDTSPKQLKFAIKL-------PNIRYQLTPTMSITELEQNV--ATQSSVDL  102 (262)
Q Consensus        33 ~~~~vlDvGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~~~~~~--~~~~~~D~  102 (262)
                      ++.+|||+|||+|.++..++.++. +|+|+|+++.+++.|+++       .++++..+|      +.+.+  +++++||+
T Consensus        49 ~~~~vLDlG~G~G~~~~~la~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D------~~~~~~~~~~~~fD~  122 (259)
T 3lpm_A           49 RKGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYD------LKKITDLIPKERADI  122 (259)
T ss_dssp             SCCEEEETTCTTTHHHHHHHTTCCCEEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSC------GGGGGGTSCTTCEEE
T ss_pred             CCCEEEEcCCchhHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCcccEEEEECc------HHHhhhhhccCCccE
Confidence            678999999999999999999865 999999999999999863       257888776      33332  45789999


Q ss_pred             EEEccccccC---------------------ChhHHHHHHHHhhcCCCeEEEEEe
Q 037961          103 VTIASALHWF---------------------DLPQFYKQVKWVLKKPSGVIAAWT  136 (262)
Q Consensus       103 V~~~~~~~~~---------------------d~~~~l~~~~r~Lk~pgG~l~i~~  136 (262)
                      |+++..++..                     +...+++.+.++|| |||++++..
T Consensus       123 Ii~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~Lk-pgG~l~~~~  176 (259)
T 3lpm_A          123 VTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLK-QGGKANFVH  176 (259)
T ss_dssp             EEECCCC-----------------------HHHHHHHHHHHHHEE-EEEEEEEEE
T ss_pred             EEECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHcc-CCcEEEEEE
Confidence            9998665432                     23569999999999 999999844

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}

Probab=99.50  E-value=9.2e-14  Score=122.64  Aligned_cols=103  Identities=22%  Similarity=0.186  Sum_probs=82.5

Q ss_pred             HHHHHHhhC--CCCCeEEEEcCcccHhHHHHHhhCC-eEEEEcCCHHHHHHHhcC-------CCceEEeCCCCchhhhhh
Q 037961           23 LFKLIASKT--PKRNLAWDVGTRSGQAAASLAQIYQ-HVIATDTSPKQLKFAIKL-------PNIRYQLTPTMSITELEQ   92 (262)
Q Consensus        23 ~~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~~~~   92 (262)
                      +.+.|....  .++.+|||||||+|.++..+++.++ +|+|+|+| .|++.|++.       .+++++.++      +++
T Consensus        51 ~~~~i~~~~~~~~~~~VLDlGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~a~~~~~~~~~~~~v~~~~~d------~~~  123 (376)
T 3r0q_C           51 YFNAVFQNKHHFEGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMADHARALVKANNLDHIVEVIEGS------VED  123 (376)
T ss_dssp             HHHHHHTTTTTTTTCEEEEESCTTTHHHHHHHHTTCSEEEEEESS-TTHHHHHHHHHHTTCTTTEEEEESC------GGG
T ss_pred             HHHHHHhccccCCCCEEEEeccCcCHHHHHHHhcCCCEEEEEccH-HHHHHHHHHHHHcCCCCeEEEEECc------hhh
Confidence            344454433  4778999999999999999999877 99999999 999988753       347888765      666


Q ss_pred             ccCCCCceeeEEEccccccC----ChhHHHHHHHHhhcCCCeEEEE
Q 037961           93 NVATQSSVDLVTIASALHWF----DLPQFYKQVKWVLKKPSGVIAA  134 (262)
Q Consensus        93 ~~~~~~~~D~V~~~~~~~~~----d~~~~l~~~~r~Lk~pgG~l~i  134 (262)
                      ++++ ++||+|++....|++    +...+++++.++|| |||.|++
T Consensus       124 ~~~~-~~~D~Iv~~~~~~~l~~e~~~~~~l~~~~~~Lk-pgG~li~  167 (376)
T 3r0q_C          124 ISLP-EKVDVIISEWMGYFLLRESMFDSVISARDRWLK-PTGVMYP  167 (376)
T ss_dssp             CCCS-SCEEEEEECCCBTTBTTTCTHHHHHHHHHHHEE-EEEEEES
T ss_pred             cCcC-CcceEEEEcChhhcccchHHHHHHHHHHHhhCC-CCeEEEE
Confidence            6655 889999997766655    36669999999999 9999986

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=99.50  E-value=9.6e-14  Score=116.05  Aligned_cols=107  Identities=19%  Similarity=0.140  Sum_probs=84.6

Q ss_pred             HHHHHHHhhCCCCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhcC---CC--ceEEeCCCCchhhhhhccCC
Q 037961           22 ELFKLIASKTPKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKL---PN--IRYQLTPTMSITELEQNVAT   96 (262)
Q Consensus        22 ~~~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~---~~--~~~~~~~~~~~~~~~~~~~~   96 (262)
                      ...+.+....+++.+|||+|||+|.++..+++.+.+|+|+|+|+.+++.++++   .+  +.+..++      +... ++
T Consensus       109 ~~~~~l~~~~~~~~~VLDiGcG~G~l~~~la~~g~~v~gvDi~~~~v~~a~~n~~~~~~~v~~~~~d------~~~~-~~  181 (254)
T 2nxc_A          109 LALKALARHLRPGDKVLDLGTGSGVLAIAAEKLGGKALGVDIDPMVLPQAEANAKRNGVRPRFLEGS------LEAA-LP  181 (254)
T ss_dssp             HHHHHHHHHCCTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCGGGHHHHHHHHHHTTCCCEEEESC------HHHH-GG
T ss_pred             HHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhCCeEEEEECCHHHHHHHHHHHHHcCCcEEEEECC------hhhc-Cc
Confidence            34556666667888999999999999999999888999999999999998863   12  6777665      3221 34


Q ss_pred             CCceeeEEEccccccCChhHHHHHHHHhhcCCCeEEEEEecC
Q 037961           97 QSSVDLVTIASALHWFDLPQFYKQVKWVLKKPSGVIAAWTYT  138 (262)
Q Consensus        97 ~~~~D~V~~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~~  138 (262)
                      +++||+|+++...++  ...+++++.++|| |||.+++....
T Consensus       182 ~~~fD~Vv~n~~~~~--~~~~l~~~~~~Lk-pgG~lils~~~  220 (254)
T 2nxc_A          182 FGPFDLLVANLYAEL--HAALAPRYREALV-PGGRALLTGIL  220 (254)
T ss_dssp             GCCEEEEEEECCHHH--HHHHHHHHHHHEE-EEEEEEEEEEE
T ss_pred             CCCCCEEEECCcHHH--HHHHHHHHHHHcC-CCCEEEEEeec
Confidence            678999999876654  4679999999999 99999985543

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}

Probab=99.49  E-value=1.9e-13  Score=107.57  Aligned_cols=109  Identities=17%  Similarity=0.133  Sum_probs=87.0

Q ss_pred             CChHHHHHHHHhhC--CCCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhcC------CCceEEeCCCCchhh
Q 037961           18 NYPKELFKLIASKT--PKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKL------PNIRYQLTPTMSITE   89 (262)
Q Consensus        18 ~yp~~~~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~   89 (262)
                      ..++.+.+.+....  .++.+|||+|||+|.++..+++.+.+++|+|+|+.+++.++++      +++.+..++      
T Consensus        18 ~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d------   91 (183)
T 2yxd_A           18 ITKEEIRAVSIGKLNLNKDDVVVDVGCGSGGMTVEIAKRCKFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGR------   91 (183)
T ss_dssp             CCCHHHHHHHHHHHCCCTTCEEEEESCCCSHHHHHHHTTSSEEEEEECSHHHHHHHHHHHHHTTCCSEEEEESC------
T ss_pred             cCHHHHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECC------
Confidence            34466666666654  4678999999999999999999888999999999999998863      567888765      


Q ss_pred             hhhccCCCCceeeEEEccccccCChhHHHHHHHHhhcCCCeEEEEEecCC
Q 037961           90 LEQNVATQSSVDLVTIASALHWFDLPQFYKQVKWVLKKPSGVIAAWTYTM  139 (262)
Q Consensus        90 ~~~~~~~~~~~D~V~~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~~~  139 (262)
                      +.+ ++++++||+|+++.+   -+...+++++.++   |||.+++.....
T Consensus        92 ~~~-~~~~~~~D~i~~~~~---~~~~~~l~~~~~~---~gG~l~~~~~~~  134 (183)
T 2yxd_A           92 AED-VLDKLEFNKAFIGGT---KNIEKIIEILDKK---KINHIVANTIVL  134 (183)
T ss_dssp             HHH-HGGGCCCSEEEECSC---SCHHHHHHHHHHT---TCCEEEEEESCH
T ss_pred             ccc-cccCCCCcEEEECCc---ccHHHHHHHHhhC---CCCEEEEEeccc
Confidence            333 345578999999888   6778899999999   599999866443

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=99.49  E-value=9.9e-14  Score=119.66  Aligned_cols=103  Identities=17%  Similarity=0.153  Sum_probs=82.5

Q ss_pred             HHHHHHHhhC--CCCCeEEEEcCcccHhHHHHHhhCCe---EEEEcCCHHHHHHHhcC------CCceEEeCCCCchhhh
Q 037961           22 ELFKLIASKT--PKRNLAWDVGTRSGQAAASLAQIYQH---VIATDTSPKQLKFAIKL------PNIRYQLTPTMSITEL   90 (262)
Q Consensus        22 ~~~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~~~---v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~~   90 (262)
                      .+...+...+  .++.+|||+|||+|.++..+++.+.+   |+|+|+|+.+++.|+++      .++.+..+|      +
T Consensus        62 ~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d------~  135 (317)
T 1dl5_A           62 SLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGD------G  135 (317)
T ss_dssp             HHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESC------G
T ss_pred             HHHHHHHHhcCCCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECC------h
Confidence            4555665554  47789999999999999999987654   99999999999998753      467888765      4


Q ss_pred             hhccCCCCceeeEEEccccccCChhHHHHHHHHhhcCCCeEEEEEe
Q 037961           91 EQNVATQSSVDLVTIASALHWFDLPQFYKQVKWVLKKPSGVIAAWT  136 (262)
Q Consensus        91 ~~~~~~~~~~D~V~~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~  136 (262)
                      .+.+.++++||+|++..+++++.     +++.++|| |||++++..
T Consensus       136 ~~~~~~~~~fD~Iv~~~~~~~~~-----~~~~~~Lk-pgG~lvi~~  175 (317)
T 1dl5_A          136 YYGVPEFSPYDVIFVTVGVDEVP-----ETWFTQLK-EGGRVIVPI  175 (317)
T ss_dssp             GGCCGGGCCEEEEEECSBBSCCC-----HHHHHHEE-EEEEEEEEB
T ss_pred             hhccccCCCeEEEEEcCCHHHHH-----HHHHHhcC-CCcEEEEEE
Confidence            44333457899999999999886     57889999 999999854

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*

Probab=99.49  E-value=1.4e-13  Score=121.17  Aligned_cols=105  Identities=18%  Similarity=0.136  Sum_probs=83.8

Q ss_pred             HHHHHHhhC---CCCCeEEEEcCcccHhHHHHHhh--CCeEEEEcCCHHHHHHHhcCCCceEEeCCCCchhhhhhccCCC
Q 037961           23 LFKLIASKT---PKRNLAWDVGTRSGQAAASLAQI--YQHVIATDTSPKQLKFAIKLPNIRYQLTPTMSITELEQNVATQ   97 (262)
Q Consensus        23 ~~~~l~~~~---~~~~~vlDvGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (262)
                      ....+....   ++..+|||||||+|.++..+++.  ..+++++|+ +.+++.+++.++++++.+|      +.+ +++.
T Consensus       190 ~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~d------~~~-~~p~  261 (368)
T 3reo_A          190 TMKKILEMYNGFEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDL-PHVIQDAPAFSGVEHLGGD------MFD-GVPK  261 (368)
T ss_dssp             HHHHHHTTCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCCTTEEEEECC------TTT-CCCC
T ss_pred             HHHHHHHhcccccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeh-HHHHHhhhhcCCCEEEecC------CCC-CCCC
Confidence            344455443   35689999999999999999986  458999999 9999999888899999876      333 3454


Q ss_pred             CceeeEEEccccccC-Chh--HHHHHHHHhhcCCCeEEEEEecC
Q 037961           98 SSVDLVTIASALHWF-DLP--QFYKQVKWVLKKPSGVIAAWTYT  138 (262)
Q Consensus        98 ~~~D~V~~~~~~~~~-d~~--~~l~~~~r~Lk~pgG~l~i~~~~  138 (262)
                      +  |+|++..++|++ |.+  +++++++++|| |||+|++....
T Consensus       262 ~--D~v~~~~vlh~~~~~~~~~~l~~~~~~L~-pgG~l~i~e~~  302 (368)
T 3reo_A          262 G--DAIFIKWICHDWSDEHCLKLLKNCYAALP-DHGKVIVAEYI  302 (368)
T ss_dssp             C--SEEEEESCGGGBCHHHHHHHHHHHHHHSC-TTCEEEEEECC
T ss_pred             C--CEEEEechhhcCCHHHHHHHHHHHHHHcC-CCCEEEEEEec
Confidence            4  999999999977 433  68999999999 99999986543

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=99.49  E-value=1.6e-13  Score=111.29  Aligned_cols=105  Identities=15%  Similarity=0.084  Sum_probs=81.9

Q ss_pred             HHHHHHHHhhC--CCCCeEEEEcCcccHhHHHHHhhC---CeEEEEcCCHHHHHHHhcC------CCceEEeCCCCchhh
Q 037961           21 KELFKLIASKT--PKRNLAWDVGTRSGQAAASLAQIY---QHVIATDTSPKQLKFAIKL------PNIRYQLTPTMSITE   89 (262)
Q Consensus        21 ~~~~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~   89 (262)
                      +.+...+....  .++.+|||+|||+|..+..+++.+   .+|+++|+|+.+++.+++.      .++.+..++      
T Consensus        63 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d------  136 (215)
T 2yxe_A           63 IHMVGMMCELLDLKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIVGD------  136 (215)
T ss_dssp             HHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEESC------
T ss_pred             HHHHHHHHHhhCCCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECC------
Confidence            44455555443  467899999999999999999875   7999999999999998753      567887765      


Q ss_pred             hhhccCCCCceeeEEEccccccCChhHHHHHHHHhhcCCCeEEEEEec
Q 037961           90 LEQNVATQSSVDLVTIASALHWFDLPQFYKQVKWVLKKPSGVIAAWTY  137 (262)
Q Consensus        90 ~~~~~~~~~~~D~V~~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~  137 (262)
                      +......+++||+|++..++|++.     .++.++|| |||++++...
T Consensus       137 ~~~~~~~~~~fD~v~~~~~~~~~~-----~~~~~~L~-pgG~lv~~~~  178 (215)
T 2yxe_A          137 GTLGYEPLAPYDRIYTTAAGPKIP-----EPLIRQLK-DGGKLLMPVG  178 (215)
T ss_dssp             GGGCCGGGCCEEEEEESSBBSSCC-----HHHHHTEE-EEEEEEEEES
T ss_pred             cccCCCCCCCeeEEEECCchHHHH-----HHHHHHcC-CCcEEEEEEC
Confidence            222111257899999999999885     48899999 9999998543

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*

Probab=99.49  E-value=8.6e-14  Score=122.63  Aligned_cols=94  Identities=21%  Similarity=0.216  Sum_probs=79.8

Q ss_pred             CCCCeEEEEcCcccHhHHHHHhhC--CeEEEEcCCHHHHHHHhcCCCceEEeCCCCchhhhhhccCCCCceeeEEEcccc
Q 037961           32 PKRNLAWDVGTRSGQAAASLAQIY--QHVIATDTSPKQLKFAIKLPNIRYQLTPTMSITELEQNVATQSSVDLVTIASAL  109 (262)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~  109 (262)
                      ++..+|||||||+|..+..+++.+  .+++++|+ +.|++.+++.+++++..+|      +.+ +++.  ||+|++..++
T Consensus       208 ~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~v~~~~~d------~~~-~~~~--~D~v~~~~~l  277 (372)
T 1fp1_D          208 EGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENAPPLSGIEHVGGD------MFA-SVPQ--GDAMILKAVC  277 (372)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCCTTEEEEECC------TTT-CCCC--EEEEEEESSG
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeCh-HHHHHhhhhcCCCEEEeCC------ccc-CCCC--CCEEEEeccc
Confidence            456899999999999999999875  46888899 9999999888889998876      333 3343  9999999999


Q ss_pred             ccC-Chh--HHHHHHHHhhcCCCeEEEEEe
Q 037961          110 HWF-DLP--QFYKQVKWVLKKPSGVIAAWT  136 (262)
Q Consensus       110 ~~~-d~~--~~l~~~~r~Lk~pgG~l~i~~  136 (262)
                      |++ |.+  +++++++++|| |||+|++..
T Consensus       278 h~~~d~~~~~~l~~~~~~L~-pgG~l~i~e  306 (372)
T 1fp1_D          278 HNWSDEKCIEFLSNCHKALS-PNGKVIIVE  306 (372)
T ss_dssp             GGSCHHHHHHHHHHHHHHEE-EEEEEEEEE
T ss_pred             ccCCHHHHHHHHHHHHHhcC-CCCEEEEEE
Confidence            988 666  89999999999 999999854

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=99.49  E-value=1.3e-13  Score=116.80  Aligned_cols=104  Identities=14%  Similarity=0.122  Sum_probs=83.5

Q ss_pred             HHHHHhhCCCCCeEEEEcCcccHhHHHHHhhCC-eEEEEcCCHHHHHHHhcC------C-CceEEeCCCCchhhhhhccC
Q 037961           24 FKLIASKTPKRNLAWDVGTRSGQAAASLAQIYQ-HVIATDTSPKQLKFAIKL------P-NIRYQLTPTMSITELEQNVA   95 (262)
Q Consensus        24 ~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~------~-~~~~~~~~~~~~~~~~~~~~   95 (262)
                      ...+....+++.+|||+|||+|.++..++..+. +|+|+|+|+.|++.|+++      . ++++..+|      +.+++.
T Consensus       116 ~~~l~~~~~~~~~VLDlgcG~G~~~~~la~~~~~~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D------~~~~~~  189 (278)
T 2frn_A          116 RVRMAKVAKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMD------NRDFPG  189 (278)
T ss_dssp             HHHHHHHCCTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSC------TTTCCC
T ss_pred             HHHHHHhCCCCCEEEEecccCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECC------HHHhcc
Confidence            445556667789999999999999999999887 599999999999998853      2 36777765      444443


Q ss_pred             CCCceeeEEEccccccCChhHHHHHHHHhhcCCCeEEEEEecC
Q 037961           96 TQSSVDLVTIASALHWFDLPQFYKQVKWVLKKPSGVIAAWTYT  138 (262)
Q Consensus        96 ~~~~~D~V~~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~~  138 (262)
                       +++||+|+++..   .+...++.++.++|| |||.|++..+.
T Consensus       190 -~~~fD~Vi~~~p---~~~~~~l~~~~~~Lk-pgG~l~~~~~~  227 (278)
T 2frn_A          190 -ENIADRILMGYV---VRTHEFIPKALSIAK-DGAIIHYHNTV  227 (278)
T ss_dssp             -CSCEEEEEECCC---SSGGGGHHHHHHHEE-EEEEEEEEEEE
T ss_pred             -cCCccEEEECCc---hhHHHHHHHHHHHCC-CCeEEEEEEee
Confidence             678999998654   355789999999999 99999986654

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=99.49  E-value=3.6e-13  Score=112.22  Aligned_cols=110  Identities=21%  Similarity=0.260  Sum_probs=86.6

Q ss_pred             CCCChHHHHHHHHhhC--CCCCeEEEEcCcccHhHHHHHhh---CCeEEEEcCCHHHHHHHhcC------CC-ceEEeCC
Q 037961           16 RPNYPKELFKLIASKT--PKRNLAWDVGTRSGQAAASLAQI---YQHVIATDTSPKQLKFAIKL------PN-IRYQLTP   83 (262)
Q Consensus        16 rp~yp~~~~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~------~~-~~~~~~~   83 (262)
                      .+.||.... .+....  .++.+|||+|||+|.++..+++.   +.+|+++|+|+.+++.|+++      ++ +++..+|
T Consensus        75 ~~~~~~~~~-~i~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d  153 (255)
T 3mb5_A           75 QIVHPKDAA-LIVAYAGISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKD  153 (255)
T ss_dssp             CCCCHHHHH-HHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSC
T ss_pred             ccccHhHHH-HHHHhhCCCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECc
Confidence            345766654 444443  57789999999999999999987   67999999999999999863      34 7888765


Q ss_pred             CCchhhhhhccCCCCceeeEEEccccccCChhHHHHHHHHhhcCCCeEEEEEecC
Q 037961           84 TMSITELEQNVATQSSVDLVTIASALHWFDLPQFYKQVKWVLKKPSGVIAAWTYT  138 (262)
Q Consensus        84 ~~~~~~~~~~~~~~~~~D~V~~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~~  138 (262)
                            +.+. +++++||+|+++    .-++..+++++.++|+ |||.++++...
T Consensus       154 ------~~~~-~~~~~~D~v~~~----~~~~~~~l~~~~~~L~-~gG~l~~~~~~  196 (255)
T 3mb5_A          154 ------IYEG-IEEENVDHVILD----LPQPERVVEHAAKALK-PGGFFVAYTPC  196 (255)
T ss_dssp             ------GGGC-CCCCSEEEEEEC----SSCGGGGHHHHHHHEE-EEEEEEEEESS
T ss_pred             ------hhhc-cCCCCcCEEEEC----CCCHHHHHHHHHHHcC-CCCEEEEEECC
Confidence                  3322 567889999984    3377889999999999 99999987644

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*

Probab=99.48  E-value=2.5e-13  Score=119.60  Aligned_cols=104  Identities=14%  Similarity=0.115  Sum_probs=83.3

Q ss_pred             HHHHHhhC--CCCCeEEEEcCcccHhHHHHHhh--CCeEEEEcCCHHHHHHHhc-------CCCceEEeCCCCchhhhhh
Q 037961           24 FKLIASKT--PKRNLAWDVGTRSGQAAASLAQI--YQHVIATDTSPKQLKFAIK-------LPNIRYQLTPTMSITELEQ   92 (262)
Q Consensus        24 ~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~-------~~~~~~~~~~~~~~~~~~~   92 (262)
                      ...+....  ++..+|||||||+|.++..+++.  ..+++++|+ +.+++.|++       ..++++..+|      +. 
T Consensus       191 ~~~l~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~l~~~v~~~~~d------~~-  262 (369)
T 3gwz_A          191 AGQVAAAYDFSGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLER-PPVAEEARELLTGRGLADRCEILPGD------FF-  262 (369)
T ss_dssp             HHHHHHHSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECC------TT-
T ss_pred             HHHHHHhCCCccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcC-HHHHHHHHHhhhhcCcCCceEEeccC------CC-
Confidence            44455543  46689999999999999999987  458999999 999999885       2568888876      22 


Q ss_pred             ccCCCCceeeEEEccccccC-Chh--HHHHHHHHhhcCCCeEEEEEec
Q 037961           93 NVATQSSVDLVTIASALHWF-DLP--QFYKQVKWVLKKPSGVIAAWTY  137 (262)
Q Consensus        93 ~~~~~~~~D~V~~~~~~~~~-d~~--~~l~~~~r~Lk~pgG~l~i~~~  137 (262)
                      .+++. +||+|++..++|++ |..  ++++++.++|+ |||+|++...
T Consensus       263 ~~~p~-~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~-pgG~l~i~e~  308 (369)
T 3gwz_A          263 ETIPD-GADVYLIKHVLHDWDDDDVVRILRRIATAMK-PDSRLLVIDN  308 (369)
T ss_dssp             TCCCS-SCSEEEEESCGGGSCHHHHHHHHHHHHTTCC-TTCEEEEEEE
T ss_pred             CCCCC-CceEEEhhhhhccCCHHHHHHHHHHHHHHcC-CCCEEEEEEe
Confidence            23344 79999999999988 443  59999999999 9999998554

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}

Probab=99.48  E-value=2.3e-13  Score=117.82  Aligned_cols=98  Identities=18%  Similarity=0.209  Sum_probs=80.3

Q ss_pred             CCCCeEEEEcCcccHhHHHHHhh--CCeEEEEcCCHHHHHHHhcC-------CCceEEeCCCCchhhhhhccCCCCceee
Q 037961           32 PKRNLAWDVGTRSGQAAASLAQI--YQHVIATDTSPKQLKFAIKL-------PNIRYQLTPTMSITELEQNVATQSSVDL  102 (262)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~D~  102 (262)
                      ++..+|||+|||+|..+..+++.  +.+++++|++ .+++.+++.       .++++..+|      +.+.+++.+ ||+
T Consensus       164 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~~~~~~~~~~v~~~~~d------~~~~~~~~~-~D~  235 (335)
T 2r3s_A          164 IEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWA-SVLEVAKENARIQGVASRYHTIAGS------AFEVDYGND-YDL  235 (335)
T ss_dssp             CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECH-HHHHHHHHHHHHHTCGGGEEEEESC------TTTSCCCSC-EEE
T ss_pred             CCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecH-HHHHHHHHHHHhcCCCcceEEEecc------cccCCCCCC-CcE
Confidence            56689999999999999999987  5799999999 999998853       358888775      333344444 999


Q ss_pred             EEEccccccCC-h--hHHHHHHHHhhcCCCeEEEEEecC
Q 037961          103 VTIASALHWFD-L--PQFYKQVKWVLKKPSGVIAAWTYT  138 (262)
Q Consensus       103 V~~~~~~~~~d-~--~~~l~~~~r~Lk~pgG~l~i~~~~  138 (262)
                      |++..++|+++ .  .++++++.++|+ |||.+++....
T Consensus       236 v~~~~~l~~~~~~~~~~~l~~~~~~L~-pgG~l~i~e~~  273 (335)
T 2r3s_A          236 VLLPNFLHHFDVATCEQLLRKIKTALA-VEGKVIVFDFI  273 (335)
T ss_dssp             EEEESCGGGSCHHHHHHHHHHHHHHEE-EEEEEEEEECC
T ss_pred             EEEcchhccCCHHHHHHHHHHHHHhCC-CCcEEEEEeec
Confidence            99999999883 3  479999999999 99999986554

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=99.48  E-value=1.7e-13  Score=111.97  Aligned_cols=98  Identities=11%  Similarity=0.169  Sum_probs=77.8

Q ss_pred             CCCeEEEEcCcccHhHHHHHhh---CCeEEEEcCCHHHHHHHhcC-------CCceEEeCCCCchhhhhh-cc-C----C
Q 037961           33 KRNLAWDVGTRSGQAAASLAQI---YQHVIATDTSPKQLKFAIKL-------PNIRYQLTPTMSITELEQ-NV-A----T   96 (262)
Q Consensus        33 ~~~~vlDvGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~~~~-~~-~----~   96 (262)
                      ++.+|||+|||+|..+..+++.   +.+|+++|+++.|++.|+++       .+++++.++      +.+ ++ +    .
T Consensus        58 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d------~~~~l~~~~~~~~  131 (221)
T 3u81_A           58 SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGA------SQDLIPQLKKKYD  131 (221)
T ss_dssp             CCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESC------HHHHGGGTTTTSC
T ss_pred             CCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECC------HHHHHHHHHHhcC
Confidence            5678999999999999999984   67999999999999999862       358888876      211 22 1    1


Q ss_pred             CCceeeEEEccccccC-ChhHHHHHHHHhhcCCCeEEEEEecC
Q 037961           97 QSSVDLVTIASALHWF-DLPQFYKQVKWVLKKPSGVIAAWTYT  138 (262)
Q Consensus        97 ~~~~D~V~~~~~~~~~-d~~~~l~~~~r~Lk~pgG~l~i~~~~  138 (262)
                      .++||+|++....++. +...++..+ ++|| |||+|++-+..
T Consensus       132 ~~~fD~V~~d~~~~~~~~~~~~~~~~-~~Lk-pgG~lv~~~~~  172 (221)
T 3u81_A          132 VDTLDMVFLDHWKDRYLPDTLLLEKC-GLLR-KGTVLLADNVI  172 (221)
T ss_dssp             CCCCSEEEECSCGGGHHHHHHHHHHT-TCCC-TTCEEEESCCC
T ss_pred             CCceEEEEEcCCcccchHHHHHHHhc-cccC-CCeEEEEeCCC
Confidence            2689999999877777 666778888 9999 99999984443

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=99.48  E-value=3.6e-13  Score=113.77  Aligned_cols=112  Identities=21%  Similarity=0.245  Sum_probs=86.8

Q ss_pred             CCCChHHHHHHHHhh--CCCCCeEEEEcCcccHhHHHHHhh---CCeEEEEcCCHHHHHHHhcC---------CCceEEe
Q 037961           16 RPNYPKELFKLIASK--TPKRNLAWDVGTRSGQAAASLAQI---YQHVIATDTSPKQLKFAIKL---------PNIRYQL   81 (262)
Q Consensus        16 rp~yp~~~~~~l~~~--~~~~~~vlDvGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~---------~~~~~~~   81 (262)
                      .+.||.... .+...  ..++.+|||+|||+|.++..+++.   +.+|+++|+++.+++.|+++         .++.+..
T Consensus        81 ~~~~~~~~~-~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~  159 (280)
T 1i9g_A           81 QVIYPKDAA-QIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVV  159 (280)
T ss_dssp             CCCCHHHHH-HHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEEC
T ss_pred             eeecHHHHH-HHHHHcCCCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEE
Confidence            345665543 34333  357789999999999999999985   67999999999999988752         3577776


Q ss_pred             CCCCchhhhhhccCCCCceeeEEEccccccCChhHHHHHHHHhhcCCCeEEEEEecCC
Q 037961           82 TPTMSITELEQNVATQSSVDLVTIASALHWFDLPQFYKQVKWVLKKPSGVIAAWTYTM  139 (262)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~D~V~~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~~~  139 (262)
                      +|      +.+.++++++||+|+++    ..++..+++++.++|+ |||.++++....
T Consensus       160 ~d------~~~~~~~~~~~D~v~~~----~~~~~~~l~~~~~~L~-pgG~l~~~~~~~  206 (280)
T 1i9g_A          160 SD------LADSELPDGSVDRAVLD----MLAPWEVLDAVSRLLV-AGGVLMVYVATV  206 (280)
T ss_dssp             SC------GGGCCCCTTCEEEEEEE----SSCGGGGHHHHHHHEE-EEEEEEEEESSH
T ss_pred             Cc------hHhcCCCCCceeEEEEC----CcCHHHHHHHHHHhCC-CCCEEEEEeCCH
Confidence            54      55555667889999983    2377799999999999 999999976543

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*

Probab=99.48  E-value=1.2e-13  Score=119.70  Aligned_cols=96  Identities=15%  Similarity=0.081  Sum_probs=79.1

Q ss_pred             CCCeEEEEcCcccHhHHHHHhh--CCeEEEEcCCHHHHHHHhcC-------CCceEEeCCCCchhhhhhccCCCCceeeE
Q 037961           33 KRNLAWDVGTRSGQAAASLAQI--YQHVIATDTSPKQLKFAIKL-------PNIRYQLTPTMSITELEQNVATQSSVDLV  103 (262)
Q Consensus        33 ~~~~vlDvGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~D~V  103 (262)
                      +..+|||+|||+|.++..+++.  ..+++++|+ +.+++.+++.       .++++..+|      +. .+++. +||+|
T Consensus       169 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d------~~-~~~p~-~~D~v  239 (332)
T 3i53_A          169 ALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDL-QGPASAAHRRFLDTGLSGRAQVVVGS------FF-DPLPA-GAGGY  239 (332)
T ss_dssp             GGSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECC------TT-SCCCC-SCSEE
T ss_pred             CCCEEEEeCCChhHHHHHHHHHCCCCeEEEecC-HHHHHHHHHhhhhcCcCcCeEEecCC------CC-CCCCC-CCcEE
Confidence            4579999999999999999885  458999999 9999998852       568888876      32 22344 79999


Q ss_pred             EEccccccC-Ch--hHHHHHHHHhhcCCCeEEEEEecC
Q 037961          104 TIASALHWF-DL--PQFYKQVKWVLKKPSGVIAAWTYT  138 (262)
Q Consensus       104 ~~~~~~~~~-d~--~~~l~~~~r~Lk~pgG~l~i~~~~  138 (262)
                      ++.+++|++ |.  .+++++++++|+ |||+|++....
T Consensus       240 ~~~~vlh~~~~~~~~~~l~~~~~~L~-pgG~l~i~e~~  276 (332)
T 3i53_A          240 VLSAVLHDWDDLSAVAILRRCAEAAG-SGGVVLVIEAV  276 (332)
T ss_dssp             EEESCGGGSCHHHHHHHHHHHHHHHT-TTCEEEEEECC
T ss_pred             EEehhhccCCHHHHHHHHHHHHHhcC-CCCEEEEEeec
Confidence            999999988 43  679999999999 99999986543

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=99.48  E-value=2.1e-13  Score=112.33  Aligned_cols=111  Identities=16%  Similarity=0.189  Sum_probs=84.2

Q ss_pred             hCCCChHHHHHHHHhhC--CCCCeEEEEcCcccHhHHHHHh--hCCeEEEEcCCHHHHHHHhcC-------CCceEEeCC
Q 037961           15 ARPNYPKELFKLIASKT--PKRNLAWDVGTRSGQAAASLAQ--IYQHVIATDTSPKQLKFAIKL-------PNIRYQLTP   83 (262)
Q Consensus        15 ~rp~yp~~~~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~--~~~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~   83 (262)
                      ..|...+.....+....  .++.+|||+|||+|..+..++.  .+.+|+++|+++.+++.|+++       .++++..++
T Consensus        51 ~~~~~~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d  130 (232)
T 3ntv_A           51 EVPIVDRLTLDLIKQLIRMNNVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGN  130 (232)
T ss_dssp             TCCCCCHHHHHHHHHHHHHHTCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESC
T ss_pred             CCCCcCHHHHHHHHHHHhhcCCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECC
Confidence            34545455555444433  3678899999999999999998  468999999999999999852       378888876


Q ss_pred             CCchhhhhh-cc-CCCCceeeEEEccccccCChhHHHHHHHHhhcCCCeEEEE
Q 037961           84 TMSITELEQ-NV-ATQSSVDLVTIASALHWFDLPQFYKQVKWVLKKPSGVIAA  134 (262)
Q Consensus        84 ~~~~~~~~~-~~-~~~~~~D~V~~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i  134 (262)
                            +.+ ++ ..+++||+|++...  .-+...+++++.++|| |||+|++
T Consensus       131 ------~~~~~~~~~~~~fD~V~~~~~--~~~~~~~l~~~~~~Lk-pgG~lv~  174 (232)
T 3ntv_A          131 ------ALEQFENVNDKVYDMIFIDAA--KAQSKKFFEIYTPLLK-HQGLVIT  174 (232)
T ss_dssp             ------GGGCHHHHTTSCEEEEEEETT--SSSHHHHHHHHGGGEE-EEEEEEE
T ss_pred             ------HHHHHHhhccCCccEEEEcCc--HHHHHHHHHHHHHhcC-CCeEEEE
Confidence                  222 22 22678999997643  2267789999999999 9999988

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=99.48  E-value=4.5e-14  Score=131.02  Aligned_cols=104  Identities=15%  Similarity=0.140  Sum_probs=82.6

Q ss_pred             HHhhCCCCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhcC------CCceEEeCCCCchhhhhhc--cCCCC
Q 037961           27 IASKTPKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKL------PNIRYQLTPTMSITELEQN--VATQS   98 (262)
Q Consensus        27 l~~~~~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~~~~~--~~~~~   98 (262)
                      +....+.+.+|||||||+|.++..|++.|++|+|||+|+.+++.|+.+      .+++|.+++      ++++  ..+++
T Consensus        60 ~~~~~~~~~~vLDvGCG~G~~~~~la~~ga~V~giD~~~~~i~~a~~~a~~~~~~~~~~~~~~------~~~~~~~~~~~  133 (569)
T 4azs_A           60 LSRALGRPLNVLDLGCAQGFFSLSLASKGATIVGIDFQQENINVCRALAEENPDFAAEFRVGR------IEEVIAALEEG  133 (569)
T ss_dssp             HHHHHTSCCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTSTTSEEEEEECC------HHHHHHHCCTT
T ss_pred             HHhhcCCCCeEEEECCCCcHHHHHHHhCCCEEEEECCCHHHHHHHHHHHHhcCCCceEEEECC------HHHHhhhccCC
Confidence            333345667899999999999999999999999999999999998742      357888765      5554  34678


Q ss_pred             ceeeEEEccccccC-ChhH--HHHHHHHhhcCCCeEEEEEec
Q 037961           99 SVDLVTIASALHWF-DLPQ--FYKQVKWVLKKPSGVIAAWTY  137 (262)
Q Consensus        99 ~~D~V~~~~~~~~~-d~~~--~l~~~~r~Lk~pgG~l~i~~~  137 (262)
                      +||+|+|..++||+ |+..  .+..+.+.|+ ++|...+...
T Consensus       134 ~fD~v~~~e~~ehv~~~~~~~~~~~~~~tl~-~~~~~~~~~~  174 (569)
T 4azs_A          134 EFDLAIGLSVFHHIVHLHGIDEVKRLLSRLA-DVTQAVILEL  174 (569)
T ss_dssp             SCSEEEEESCHHHHHHHHCHHHHHHHHHHHH-HHSSEEEEEC
T ss_pred             CccEEEECcchhcCCCHHHHHHHHHHHHHhc-cccceeeEEe
Confidence            99999999999999 7664  3556778888 8887766443

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=99.48  E-value=1.7e-13  Score=109.71  Aligned_cols=118  Identities=14%  Similarity=0.175  Sum_probs=81.4

Q ss_pred             CCCChHHHHHHHHhh--CCCCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhcCCCceEEeCC--CCchhh-h
Q 037961           16 RPNYPKELFKLIASK--TPKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKLPNIRYQLTP--TMSITE-L   90 (262)
Q Consensus        16 rp~yp~~~~~~l~~~--~~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~--~~~~~~-~   90 (262)
                      |.+-.-++.+.+...  .+++.+|||+|||+|.++..+++.+.+|+|+|+++..     ..+++.++++|  .....+ +
T Consensus         6 r~Ra~~KL~ei~~~~~~~~~g~~VLDlG~G~G~~s~~la~~~~~V~gvD~~~~~-----~~~~v~~~~~D~~~~~~~~~~   80 (191)
T 3dou_A            6 RSRAAFKLEFLLDRYRVVRKGDAVIEIGSSPGGWTQVLNSLARKIISIDLQEME-----EIAGVRFIRCDIFKETIFDDI   80 (191)
T ss_dssp             TSHHHHHHHHHHHHHCCSCTTCEEEEESCTTCHHHHHHTTTCSEEEEEESSCCC-----CCTTCEEEECCTTSSSHHHHH
T ss_pred             CCcHHHHHHHHHHHcCCCCCCCEEEEEeecCCHHHHHHHHcCCcEEEEeccccc-----cCCCeEEEEccccCHHHHHHH
Confidence            333334555555544  3678999999999999999999998999999999752     34689999888  211100 0


Q ss_pred             hhccCC---CCceeeEEEccccccC-----C-------hhHHHHHHHHhhcCCCeEEEEEecCCC
Q 037961           91 EQNVAT---QSSVDLVTIASALHWF-----D-------LPQFYKQVKWVLKKPSGVIAAWTYTMP  140 (262)
Q Consensus        91 ~~~~~~---~~~~D~V~~~~~~~~~-----d-------~~~~l~~~~r~Lk~pgG~l~i~~~~~~  140 (262)
                      ... +.   .++||+|++..+..+.     |       ...+++.+.++|| |||+|++-.+...
T Consensus        81 ~~~-~~~~~~~~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~Lk-pGG~lv~k~~~~~  143 (191)
T 3dou_A           81 DRA-LREEGIEKVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLR-NGGNVLLKQFQGD  143 (191)
T ss_dssp             HHH-HHHHTCSSEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEE-EEEEEEEEEECST
T ss_pred             HHH-hhcccCCcceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHcc-CCCEEEEEEcCCC
Confidence            000 11   1489999997654322     2       2457889999999 9999998555443

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}

Probab=99.47  E-value=8.2e-14  Score=121.49  Aligned_cols=120  Identities=12%  Similarity=0.117  Sum_probs=89.0

Q ss_pred             HHHHHHhhC--CCCCeEEEEcCcccHhHHHHHhhC--CeEEEEcCCHHHHHHHhcC-----CCceEEeCCCCchhhhhhc
Q 037961           23 LFKLIASKT--PKRNLAWDVGTRSGQAAASLAQIY--QHVIATDTSPKQLKFAIKL-----PNIRYQLTPTMSITELEQN   93 (262)
Q Consensus        23 ~~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~-----~~~~~~~~~~~~~~~~~~~   93 (262)
                      ..+.+...+  .+..+|||+|||+|.++..+++.+  .+|+++|+|+.|++.++++     ..+.+..++      +...
T Consensus       184 ~~~~ll~~l~~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~d------~~~~  257 (343)
T 2pjd_A          184 GSQLLLSTLTPHTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVEGEVFASN------VFSE  257 (343)
T ss_dssp             HHHHHHHHSCTTCCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTTCCCEEEECS------TTTT
T ss_pred             HHHHHHHhcCcCCCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCEEEEcc------cccc
Confidence            344555554  245689999999999999999876  5899999999999998853     235566554      2222


Q ss_pred             cCCCCceeeEEEcccccc-----C-ChhHHHHHHHHhhcCCCeEEEEEecCCCcccHHHHHhhc
Q 037961           94 VATQSSVDLVTIASALHW-----F-DLPQFYKQVKWVLKKPSGVIAAWTYTMPEINESVGAVFK  151 (262)
Q Consensus        94 ~~~~~~~D~V~~~~~~~~-----~-d~~~~l~~~~r~Lk~pgG~l~i~~~~~~~~~~~~~~~~~  151 (262)
                        .+++||+|+++..+|+     . +...+++++.++|| |||.+++.......+...+.+.+.
T Consensus       258 --~~~~fD~Iv~~~~~~~g~~~~~~~~~~~l~~~~~~Lk-pgG~l~i~~~~~~~~~~~l~~~f~  318 (343)
T 2pjd_A          258 --VKGRFDMIISNPPFHDGMQTSLDAAQTLIRGAVRHLN-SGGELRIVANAFLPYPDVLDETFG  318 (343)
T ss_dssp             --CCSCEEEEEECCCCCSSSHHHHHHHHHHHHHHGGGEE-EEEEEEEEEETTSSHHHHHHHHHS
T ss_pred             --ccCCeeEEEECCCcccCccCCHHHHHHHHHHHHHhCC-CCcEEEEEEcCCCCcHHHHHHhcC
Confidence              3678999999999996     2 46779999999999 999999966554443344444443

>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A

Probab=99.47  E-value=2.1e-13  Score=113.46  Aligned_cols=108  Identities=23%  Similarity=0.277  Sum_probs=80.5

Q ss_pred             HHHHHHHhhCC--CCCeEEEEcCcccHhHHHHHhh----CCeEEEEcCCHHHHHHHhcC---C---C-------------
Q 037961           22 ELFKLIASKTP--KRNLAWDVGTRSGQAAASLAQI----YQHVIATDTSPKQLKFAIKL---P---N-------------   76 (262)
Q Consensus        22 ~~~~~l~~~~~--~~~~vlDvGcG~G~~~~~l~~~----~~~v~~vD~s~~~~~~a~~~---~---~-------------   76 (262)
                      ++++.+....+  +..+|||+|||+|.++..++..    +.+|+|+|+|+.+++.|+++   .   +             
T Consensus        38 ~l~~~~l~~~~~~~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~  117 (250)
T 1o9g_A           38 EIFQRALARLPGDGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSE  117 (250)
T ss_dssp             HHHHHHHHTSSCCSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcccCCCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhh
Confidence            35555555443  5678999999999999999876    56899999999999999842   2   1             


Q ss_pred             ----------------ce-------------EEeCCCCchhhhhhccC-----CCCceeeEEEccccccC-C--------
Q 037961           77 ----------------IR-------------YQLTPTMSITELEQNVA-----TQSSVDLVTIASALHWF-D--------  113 (262)
Q Consensus        77 ----------------~~-------------~~~~~~~~~~~~~~~~~-----~~~~~D~V~~~~~~~~~-d--------  113 (262)
                                      ++             +..+|      +.+...     ...+||+|+++..++.. +        
T Consensus       118 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~D------~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~  191 (250)
T 1o9g_A          118 RFGKPSYLEAAQAARRLRERLTAEGGALPCAIRTAD------VFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQ  191 (250)
T ss_dssp             HHCCHHHHHHHHHHHHHHHHHHHTTSSCCEEEEECC------TTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHH
T ss_pred             hcccccchhhhhhhhhhhhhccccccccccceeecc------cccccccccccCCCCceEEEeCCCeecccccccccccc
Confidence                            45             77665      222110     33489999999877765 3        


Q ss_pred             -hhHHHHHHHHhhcCCCeEEEEEe
Q 037961          114 -LPQFYKQVKWVLKKPSGVIAAWT  136 (262)
Q Consensus       114 -~~~~l~~~~r~Lk~pgG~l~i~~  136 (262)
                       ...+++++.++|+ |||.|++..
T Consensus       192 ~~~~~l~~~~~~Lk-pgG~l~~~~  214 (250)
T 1o9g_A          192 PVAGLLRSLASALP-AHAVIAVTD  214 (250)
T ss_dssp             HHHHHHHHHHHHSC-TTCEEEEEE
T ss_pred             HHHHHHHHHHHhcC-CCcEEEEeC
Confidence             2379999999999 999999843

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*

Probab=99.47  E-value=1.6e-13  Score=119.98  Aligned_cols=95  Identities=19%  Similarity=0.197  Sum_probs=80.3

Q ss_pred             CCCCeEEEEcCcccHhHHHHHhh--CCeEEEEcCCHHHHHHHhcCCCceEEeCCCCchhhhhhccCCCCceeeEEEcccc
Q 037961           32 PKRNLAWDVGTRSGQAAASLAQI--YQHVIATDTSPKQLKFAIKLPNIRYQLTPTMSITELEQNVATQSSVDLVTIASAL  109 (262)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~  109 (262)
                      ++..+|||||||+|..+..+++.  +.+++++|+ +.|++.+++.+++++..+|      +.+ +++  .||+|++..++
T Consensus       187 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~d------~~~-~~p--~~D~v~~~~~l  256 (352)
T 1fp2_A          187 DGLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLSGSNNLTYVGGD------MFT-SIP--NADAVLLKYIL  256 (352)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCBTTEEEEECC------TTT-CCC--CCSEEEEESCG
T ss_pred             ccCceEEEeCCCccHHHHHHHHHCCCCeEEEeeC-HHHHhhcccCCCcEEEecc------ccC-CCC--CccEEEeehhh
Confidence            46689999999999999999986  468999999 9999999887788988876      322 233  39999999999


Q ss_pred             ccC-Chh--HHHHHHHHhhcCC---CeEEEEEec
Q 037961          110 HWF-DLP--QFYKQVKWVLKKP---SGVIAAWTY  137 (262)
Q Consensus       110 ~~~-d~~--~~l~~~~r~Lk~p---gG~l~i~~~  137 (262)
                      |++ |.+  +++++++++|| |   ||+|++...
T Consensus       257 h~~~d~~~~~~l~~~~~~L~-p~~~gG~l~i~e~  289 (352)
T 1fp2_A          257 HNWTDKDCLRILKKCKEAVT-NDGKRGKVTIIDM  289 (352)
T ss_dssp             GGSCHHHHHHHHHHHHHHHS-GGGCCCEEEEEEC
T ss_pred             ccCCHHHHHHHHHHHHHhCC-CCCCCcEEEEEEe
Confidence            977 666  89999999999 9   999998544

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=99.47  E-value=1.6e-13  Score=114.46  Aligned_cols=95  Identities=15%  Similarity=0.093  Sum_probs=78.0

Q ss_pred             CCCeEEEEcCcccHhHHHHHhh--CCeEEEEcCCHHHHHHHhcC------CCceEEeCCCCchhhhhhccC---CCCcee
Q 037961           33 KRNLAWDVGTRSGQAAASLAQI--YQHVIATDTSPKQLKFAIKL------PNIRYQLTPTMSITELEQNVA---TQSSVD  101 (262)
Q Consensus        33 ~~~~vlDvGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~~~~~~~---~~~~~D  101 (262)
                      ++.+|||||||+|..+..++..  ..+|+++|+|+.+++.++++      .+++++.++      +++++.   .+++||
T Consensus        80 ~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~d------~~~~~~~~~~~~~fD  153 (249)
T 3g89_A           80 GPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLKGARALWGR------AEVLAREAGHREAYA  153 (249)
T ss_dssp             SSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEECC------HHHHTTSTTTTTCEE
T ss_pred             CCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCceEEEECc------HHHhhcccccCCCce
Confidence            5689999999999999999876  57999999999999998852      468888765      555543   247899


Q ss_pred             eEEEccccccCChhHHHHHHHHhhcCCCeEEEEEec
Q 037961          102 LVTIASALHWFDLPQFYKQVKWVLKKPSGVIAAWTY  137 (262)
Q Consensus       102 ~V~~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~  137 (262)
                      +|++...   .+...+++.+.++|| |||.++++..
T Consensus       154 ~I~s~a~---~~~~~ll~~~~~~Lk-pgG~l~~~~g  185 (249)
T 3g89_A          154 RAVARAV---APLCVLSELLLPFLE-VGGAAVAMKG  185 (249)
T ss_dssp             EEEEESS---CCHHHHHHHHGGGEE-EEEEEEEEEC
T ss_pred             EEEECCc---CCHHHHHHHHHHHcC-CCeEEEEEeC
Confidence            9998642   367889999999999 9999998653

>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*

Probab=99.47  E-value=5.9e-14  Score=118.63  Aligned_cols=95  Identities=9%  Similarity=-0.047  Sum_probs=72.7

Q ss_pred             CCCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhcC--C------CceEE--eCCCCchhhhhhccCCCCcee
Q 037961           32 PKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKL--P------NIRYQ--LTPTMSITELEQNVATQSSVD  101 (262)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~--~------~~~~~--~~~~~~~~~~~~~~~~~~~~D  101 (262)
                      +++.+|||+|||+|.++..+++. .+|+|+|+|+ |+..+++.  .      ++.++  ++      |+..+  ++++||
T Consensus        81 ~~g~~VLDlGcGtG~~s~~la~~-~~V~gVD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~------D~~~l--~~~~fD  150 (276)
T 2wa2_A           81 ELKGTVVDLGCGRGSWSYYAASQ-PNVREVKAYT-LGTSGHEKPRLVETFGWNLITFKSKV------DVTKM--EPFQAD  150 (276)
T ss_dssp             CCCEEEEEESCTTCHHHHHHHTS-TTEEEEEEEC-CCCTTSCCCCCCCCTTGGGEEEECSC------CGGGC--CCCCCS
T ss_pred             CCCCEEEEeccCCCHHHHHHHHc-CCEEEEECch-hhhhhhhchhhhhhcCCCeEEEeccC------cHhhC--CCCCcC
Confidence            57789999999999999999998 8999999998 75444332  2      56666  54      45554  467899


Q ss_pred             eEEEccccccC-C----hh---HHHHHHHHhhcCCCe--EEEEEecC
Q 037961          102 LVTIASALHWF-D----LP---QFYKQVKWVLKKPSG--VIAAWTYT  138 (262)
Q Consensus       102 ~V~~~~~~~~~-d----~~---~~l~~~~r~Lk~pgG--~l~i~~~~  138 (262)
                      +|+|..+ ++. +    ..   .+++++.++|| |||  .|++-.+.
T Consensus       151 ~Vvsd~~-~~~~~~~~d~~~~l~~L~~~~r~Lk-pGG~~~~v~~~~~  195 (276)
T 2wa2_A          151 TVLCDIG-ESNPTAAVEASRTLTVLNVISRWLE-YNQGCGFCVKVLN  195 (276)
T ss_dssp             EEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHH-HSTTCEEEEEESC
T ss_pred             EEEECCC-cCCCchhhhHHHHHHHHHHHHHHhc-cCCCcEEEEEeCC
Confidence            9999877 443 2    22   37899999999 999  98884444

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*

Probab=99.47  E-value=2.7e-13  Score=114.55  Aligned_cols=108  Identities=18%  Similarity=0.162  Sum_probs=84.5

Q ss_pred             hHHHHHHHHhhC-CCCCeEEEEcCcccHhHHHHHhh--CCeEEEEcCCHHHHHHHhcC------CCceEEeCCCCchhhh
Q 037961           20 PKELFKLIASKT-PKRNLAWDVGTRSGQAAASLAQI--YQHVIATDTSPKQLKFAIKL------PNIRYQLTPTMSITEL   90 (262)
Q Consensus        20 p~~~~~~l~~~~-~~~~~vlDvGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~~   90 (262)
                      .+.+++.+.... .++.+|||+|||+|..+..++..  +.+|+|+|+|+.+++.++++      .++.+..+|      +
T Consensus        95 te~l~~~~l~~~~~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~v~~~~~d------~  168 (276)
T 2b3t_A           95 TECLVEQALARLPEQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSD------W  168 (276)
T ss_dssp             HHHHHHHHHHHSCSSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCS------T
T ss_pred             HHHHHHHHHHhcccCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEcc------h
Confidence            356677777766 46678999999999999999975  67999999999999998853      468888776      2


Q ss_pred             hhccCCCCceeeEEEccccccC--------------------------ChhHHHHHHHHhhcCCCeEEEEE
Q 037961           91 EQNVATQSSVDLVTIASALHWF--------------------------DLPQFYKQVKWVLKKPSGVIAAW  135 (262)
Q Consensus        91 ~~~~~~~~~~D~V~~~~~~~~~--------------------------d~~~~l~~~~r~Lk~pgG~l~i~  135 (262)
                      ... +++++||+|+++..+++.                          +...+++++.++|+ |||.+++.
T Consensus       169 ~~~-~~~~~fD~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~Lk-pgG~l~~~  237 (276)
T 2b3t_A          169 FSA-LAGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALV-SGGFLLLE  237 (276)
T ss_dssp             TGG-GTTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEE-EEEEEEEE
T ss_pred             hhh-cccCCccEEEECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcC-CCCEEEEE
Confidence            221 246789999998666543                          23568899999999 99999984

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=99.47  E-value=1.4e-13  Score=110.00  Aligned_cols=104  Identities=14%  Similarity=0.072  Sum_probs=74.7

Q ss_pred             CCCCCeEEEEcCcccHhHHHHHhh-C----------CeEEEEcCCHHHHHHHhcCCCceEE-eCCCCchhhhh--hccCC
Q 037961           31 TPKRNLAWDVGTRSGQAAASLAQI-Y----------QHVIATDTSPKQLKFAIKLPNIRYQ-LTPTMSITELE--QNVAT   96 (262)
Q Consensus        31 ~~~~~~vlDvGcG~G~~~~~l~~~-~----------~~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~~~~~--~~~~~   96 (262)
                      ++++.+|||+|||+|.++..+++. +          .+|+|+|+|+.+     ..+++.+. .++........  ...++
T Consensus        20 ~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~-----~~~~~~~~~~~d~~~~~~~~~~~~~~~   94 (196)
T 2nyu_A           20 LRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF-----PLEGATFLCPADVTDPRTSQRILEVLP   94 (196)
T ss_dssp             CCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC-----CCTTCEEECSCCTTSHHHHHHHHHHSG
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc-----cCCCCeEEEeccCCCHHHHHHHHHhcC
Confidence            467889999999999999999987 3          789999999842     23567777 66611110000  01134


Q ss_pred             CCceeeEEEcccccc----C-Ch-------hHHHHHHHHhhcCCCeEEEEEecCCC
Q 037961           97 QSSVDLVTIASALHW----F-DL-------PQFYKQVKWVLKKPSGVIAAWTYTMP  140 (262)
Q Consensus        97 ~~~~D~V~~~~~~~~----~-d~-------~~~l~~~~r~Lk~pgG~l~i~~~~~~  140 (262)
                      +++||+|++..++++    . |.       ..+++++.++|| |||+|++..+...
T Consensus        95 ~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk-pgG~lv~~~~~~~  149 (196)
T 2nyu_A           95 GRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQ-PGGTFLCKTWAGS  149 (196)
T ss_dssp             GGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEE-EEEEEEEEECCSG
T ss_pred             CCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhc-CCCEEEEEecCCc
Confidence            568999999766554    3 44       478999999999 9999998655443

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}

Probab=99.47  E-value=3.2e-13  Score=117.08  Aligned_cols=116  Identities=14%  Similarity=0.102  Sum_probs=89.0

Q ss_pred             HHHHhhCCCChHHHHHHHHhhC--CCCCeEEEEcCcccHhHHHHHhh--CCeEEEEcCCHHHHHHHhcC-------CCce
Q 037961           10 NLYAVARPNYPKELFKLIASKT--PKRNLAWDVGTRSGQAAASLAQI--YQHVIATDTSPKQLKFAIKL-------PNIR   78 (262)
Q Consensus        10 ~~Y~~~rp~yp~~~~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~-------~~~~   78 (262)
                      ..|.+.. .+.......+....  ++ .+|||+|||+|..+..+++.  ..+++++|+ +.+++.+++.       .+++
T Consensus       144 ~~f~~~m-~~~~~~~~~~~~~~~~~~-~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~  220 (334)
T 2ip2_A          144 RRFLLAM-KASNLAFHEIPRLLDFRG-RSFVDVGGGSGELTKAILQAEPSARGVMLDR-EGSLGVARDNLSSLLAGERVS  220 (334)
T ss_dssp             HHHHHHH-GGGHHHHHHHHHHSCCTT-CEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TTCTHHHHHHTHHHHHTTSEE
T ss_pred             HHHHHHH-HHHHHHHHHHHHhCCCCC-CEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-HHHHHHHHHHHhhcCCCCcEE
Confidence            3444444 44445555555543  34 89999999999999999986  568999999 9999998753       4688


Q ss_pred             EEeCCCCchhhhhhccCCCCceeeEEEccccccC-Chh--HHHHHHHHhhcCCCeEEEEEec
Q 037961           79 YQLTPTMSITELEQNVATQSSVDLVTIASALHWF-DLP--QFYKQVKWVLKKPSGVIAAWTY  137 (262)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~~~~-d~~--~~l~~~~r~Lk~pgG~l~i~~~  137 (262)
                      +..+|      +.+ +++ ++||+|++..++|++ +..  ++++++.++|+ |||+|++...
T Consensus       221 ~~~~d------~~~-~~~-~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~-pgG~l~i~e~  273 (334)
T 2ip2_A          221 LVGGD------MLQ-EVP-SNGDIYLLSRIIGDLDEAASLRLLGNCREAMA-GDGRVVVIER  273 (334)
T ss_dssp             EEESC------TTT-CCC-SSCSEEEEESCGGGCCHHHHHHHHHHHHHHSC-TTCEEEEEEC
T ss_pred             EecCC------CCC-CCC-CCCCEEEEchhccCCCHHHHHHHHHHHHHhcC-CCCEEEEEEe
Confidence            88876      322 234 579999999999866 554  79999999999 9999998654

>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}

Probab=99.47  E-value=6.9e-14  Score=115.37  Aligned_cols=96  Identities=21%  Similarity=0.265  Sum_probs=66.0

Q ss_pred             CCCeEEEEcCcccHhHHHHHhhCC-eEEEEcCCHHHHHHHhcC-CCceEEeCCCC---chhhhhhccCCCCceeeEEEcc
Q 037961           33 KRNLAWDVGTRSGQAAASLAQIYQ-HVIATDTSPKQLKFAIKL-PNIRYQLTPTM---SITELEQNVATQSSVDLVTIAS  107 (262)
Q Consensus        33 ~~~~vlDvGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~-~~~~~~~~~~~---~~~~~~~~~~~~~~~D~V~~~~  107 (262)
                      ++.+|||+|||||.++..+++.++ +|+|+|+|+.|++.+++. +++.......+   ..+++....+...+||+++++ 
T Consensus        37 ~g~~VLDiGcGtG~~t~~la~~g~~~V~gvDis~~ml~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~D~v~~~-  115 (232)
T 3opn_A           37 NGKTCLDIGSSTGGFTDVMLQNGAKLVYALDVGTNQLAWKIRSDERVVVMEQFNFRNAVLADFEQGRPSFTSIDVSFIS-  115 (232)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSCCCCCHHHHTCTTEEEECSCCGGGCCGGGCCSCCCSEEEECCSSSC-
T ss_pred             CCCEEEEEccCCCHHHHHHHhcCCCEEEEEcCCHHHHHHHHHhCccccccccceEEEeCHhHcCcCCCCEEEEEEEhhh-
Confidence            467999999999999999999985 999999999999987653 33332222111   112221111122344444432 


Q ss_pred             ccccCChhHHHHHHHHhhcCCCeEEEEEe
Q 037961          108 ALHWFDLPQFYKQVKWVLKKPSGVIAAWT  136 (262)
Q Consensus       108 ~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~  136 (262)
                            ...+++++.|+|| |||.|++..
T Consensus       116 ------l~~~l~~i~rvLk-pgG~lv~~~  137 (232)
T 3opn_A          116 ------LDLILPPLYEILE-KNGEVAALI  137 (232)
T ss_dssp             ------GGGTHHHHHHHSC-TTCEEEEEE
T ss_pred             ------HHHHHHHHHHhcc-CCCEEEEEE
Confidence                  3889999999999 999999843

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=99.46  E-value=1.2e-13  Score=113.14  Aligned_cols=101  Identities=16%  Similarity=0.139  Sum_probs=79.4

Q ss_pred             HHHHHhhCCCCCeEEEEcCcccHhHHHHHhhCC-------eEEEEcCCHHHHHHHhcC-----------CCceEEeCCCC
Q 037961           24 FKLIASKTPKRNLAWDVGTRSGQAAASLAQIYQ-------HVIATDTSPKQLKFAIKL-----------PNIRYQLTPTM   85 (262)
Q Consensus        24 ~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~~-------~v~~vD~s~~~~~~a~~~-----------~~~~~~~~~~~   85 (262)
                      ++.+.....++.+|||+|||+|..+..+++.+.       +|+++|+++.+++.|+++           .++.+..+|  
T Consensus        71 ~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d--  148 (227)
T 2pbf_A           71 LKRLINVLKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKN--  148 (227)
T ss_dssp             HHHHTTTSCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECC--
T ss_pred             HHHHHhhCCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECC--
Confidence            444443456788999999999999999998754       999999999999998753           367888776  


Q ss_pred             chhhhhhcc----CCCCceeeEEEccccccCChhHHHHHHHHhhcCCCeEEEEEe
Q 037961           86 SITELEQNV----ATQSSVDLVTIASALHWFDLPQFYKQVKWVLKKPSGVIAAWT  136 (262)
Q Consensus        86 ~~~~~~~~~----~~~~~~D~V~~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~  136 (262)
                          +....    ...++||+|++..+++++     ++++.++|| |||++++..
T Consensus       149 ----~~~~~~~~~~~~~~fD~I~~~~~~~~~-----~~~~~~~Lk-pgG~lv~~~  193 (227)
T 2pbf_A          149 ----IYQVNEEEKKELGLFDAIHVGASASEL-----PEILVDLLA-ENGKLIIPI  193 (227)
T ss_dssp             ----GGGCCHHHHHHHCCEEEEEECSBBSSC-----CHHHHHHEE-EEEEEEEEE
T ss_pred             ----hHhcccccCccCCCcCEEEECCchHHH-----HHHHHHhcC-CCcEEEEEE
Confidence                22221    235689999999998865     478899999 999999844

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=99.46  E-value=2.7e-13  Score=111.54  Aligned_cols=113  Identities=16%  Similarity=0.169  Sum_probs=85.8

Q ss_pred             hCCCChHHHHHHHHhhC--CCCCeEEEEcCcccHhHHHHHhh--CCeEEEEcCCHHHHHHHhcC-------CCceEEeCC
Q 037961           15 ARPNYPKELFKLIASKT--PKRNLAWDVGTRSGQAAASLAQI--YQHVIATDTSPKQLKFAIKL-------PNIRYQLTP   83 (262)
Q Consensus        15 ~rp~yp~~~~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~   83 (262)
                      ..|...+.....+....  .++.+|||+|||+|..+..+++.  +.+|+++|+++.+++.|++.       .++.+..++
T Consensus        34 ~~~~~~~~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d  113 (233)
T 2gpy_A           34 QVPIMDLLGMESLLHLLKMAAPARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLFGD  113 (233)
T ss_dssp             TCCCCCHHHHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSC
T ss_pred             CCCCcCHHHHHHHHHHHhccCCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECC
Confidence            44544555555544433  36678999999999999999987  58999999999999998863       357888776


Q ss_pred             CCchhhhhh-ccC--CCCceeeEEEccccccCChhHHHHHHHHhhcCCCeEEEEEe
Q 037961           84 TMSITELEQ-NVA--TQSSVDLVTIASALHWFDLPQFYKQVKWVLKKPSGVIAAWT  136 (262)
Q Consensus        84 ~~~~~~~~~-~~~--~~~~~D~V~~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~  136 (262)
                            +.. ++.  .+++||+|++....+  +...+++++.++|+ |||.+++.+
T Consensus       114 ------~~~~~~~~~~~~~fD~I~~~~~~~--~~~~~l~~~~~~L~-pgG~lv~~~  160 (233)
T 2gpy_A          114 ------ALQLGEKLELYPLFDVLFIDAAKG--QYRRFFDMYSPMVR-PGGLILSDN  160 (233)
T ss_dssp             ------GGGSHHHHTTSCCEEEEEEEGGGS--CHHHHHHHHGGGEE-EEEEEEEET
T ss_pred             ------HHHHHHhcccCCCccEEEECCCHH--HHHHHHHHHHHHcC-CCeEEEEEc
Confidence                  222 121  257899999877654  77889999999999 999999843

>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*

Probab=99.46  E-value=1.1e-13  Score=114.58  Aligned_cols=98  Identities=15%  Similarity=0.106  Sum_probs=76.8

Q ss_pred             CCCeEEEEcCcccHhHHHHHhh------CCeEEEEcCCHHHHHHHhcC-CCceEEeCCCCchhhhhhccC-CCCceeeEE
Q 037961           33 KRNLAWDVGTRSGQAAASLAQI------YQHVIATDTSPKQLKFAIKL-PNIRYQLTPTMSITELEQNVA-TQSSVDLVT  104 (262)
Q Consensus        33 ~~~~vlDvGcG~G~~~~~l~~~------~~~v~~vD~s~~~~~~a~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~D~V~  104 (262)
                      ++.+|||||||+|..+..+++.      +.+|+|+|+|+.|++.|+.. .+++++.+|...   ...++. ...+||+|+
T Consensus        81 ~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~~~~~v~~~~gD~~~---~~~l~~~~~~~fD~I~  157 (236)
T 2bm8_A           81 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASDMENITLHQGDCSD---LTTFEHLREMAHPLIF  157 (236)
T ss_dssp             CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGGCTTEEEEECCSSC---SGGGGGGSSSCSSEEE
T ss_pred             CCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhccCCceEEEECcchh---HHHHHhhccCCCCEEE
Confidence            4578999999999999999886      67999999999999888753 678999887211   100222 334799999


Q ss_pred             EccccccCChhHHHHHHHH-hhcCCCeEEEEEe
Q 037961          105 IASALHWFDLPQFYKQVKW-VLKKPSGVIAAWT  136 (262)
Q Consensus       105 ~~~~~~~~d~~~~l~~~~r-~Lk~pgG~l~i~~  136 (262)
                      +..+ | .+...++.++.+ +|| |||+|++..
T Consensus       158 ~d~~-~-~~~~~~l~~~~r~~Lk-pGG~lv~~d  187 (236)
T 2bm8_A          158 IDNA-H-ANTFNIMKWAVDHLLE-EGDYFIIED  187 (236)
T ss_dssp             EESS-C-SSHHHHHHHHHHHTCC-TTCEEEECS
T ss_pred             ECCc-h-HhHHHHHHHHHHhhCC-CCCEEEEEe
Confidence            8665 4 478889999997 999 999999843

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*

Probab=99.46  E-value=3.3e-13  Score=118.57  Aligned_cols=96  Identities=18%  Similarity=0.154  Sum_probs=80.1

Q ss_pred             CCCCeEEEEcCcccHhHHHHHhh--CCeEEEEcCCHHHHHHHhcCCCceEEeCCCCchhhhhhccCCCCceeeEEEcccc
Q 037961           32 PKRNLAWDVGTRSGQAAASLAQI--YQHVIATDTSPKQLKFAIKLPNIRYQLTPTMSITELEQNVATQSSVDLVTIASAL  109 (262)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~  109 (262)
                      .+..+|||||||+|.++..+++.  ..+++++|+ +.+++.+++.++++++.+|      +.+ +++.+  |+|++..++
T Consensus       200 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D------~~~-~~p~~--D~v~~~~vl  269 (364)
T 3p9c_A          200 EGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDL-PHVISEAPQFPGVTHVGGD------MFK-EVPSG--DTILMKWIL  269 (364)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCCTTEEEEECC------TTT-CCCCC--SEEEEESCG
T ss_pred             cCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecC-HHHHHhhhhcCCeEEEeCC------cCC-CCCCC--CEEEehHHh
Confidence            36689999999999999999986  458999999 9999999888899999876      333 44544  999999999


Q ss_pred             ccC-Ch--hHHHHHHHHhhcCCCeEEEEEecC
Q 037961          110 HWF-DL--PQFYKQVKWVLKKPSGVIAAWTYT  138 (262)
Q Consensus       110 ~~~-d~--~~~l~~~~r~Lk~pgG~l~i~~~~  138 (262)
                      |+. |.  .+++++++++|| |||+|++....
T Consensus       270 h~~~d~~~~~~L~~~~~~L~-pgG~l~i~e~~  300 (364)
T 3p9c_A          270 HDWSDQHCATLLKNCYDALP-AHGKVVLVQCI  300 (364)
T ss_dssp             GGSCHHHHHHHHHHHHHHSC-TTCEEEEEECC
T ss_pred             ccCCHHHHHHHHHHHHHHcC-CCCEEEEEEec
Confidence            977 33  468999999999 99999986543

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=99.46  E-value=3.3e-13  Score=115.74  Aligned_cols=100  Identities=19%  Similarity=0.201  Sum_probs=77.4

Q ss_pred             CCCCCeEEEEcCcccHhHHHHHhh--CCeEEEEcCCHHHHHHHhcC----------CCceEEeCCCCchhhhhhccC--C
Q 037961           31 TPKRNLAWDVGTRSGQAAASLAQI--YQHVIATDTSPKQLKFAIKL----------PNIRYQLTPTMSITELEQNVA--T   96 (262)
Q Consensus        31 ~~~~~~vlDvGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~----------~~~~~~~~~~~~~~~~~~~~~--~   96 (262)
                      .+++.+|||+|||+|.++..+++.  ..+|+++|+|+.+++.+++.          +++++..+|      +...+.  +
T Consensus        93 ~~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D------~~~~~~~~~  166 (304)
T 3bwc_A           93 HPKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGD------GLAFVRQTP  166 (304)
T ss_dssp             SSSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESC------HHHHHHSSC
T ss_pred             CCCCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECc------HHHHHHhcc
Confidence            356789999999999999999986  46999999999999998752          467787765      333322  4


Q ss_pred             CCceeeEEEccccccC-Ch----hHHHHHHHHhhcCCCeEEEEEec
Q 037961           97 QSSVDLVTIASALHWF-DL----PQFYKQVKWVLKKPSGVIAAWTY  137 (262)
Q Consensus        97 ~~~~D~V~~~~~~~~~-d~----~~~l~~~~r~Lk~pgG~l~i~~~  137 (262)
                      +++||+|++....++. +.    ..+++++.++|| |||+|++...
T Consensus       167 ~~~fDvIi~d~~~~~~~~~~l~~~~~l~~~~~~Lk-pgG~lv~~~~  211 (304)
T 3bwc_A          167 DNTYDVVIIDTTDPAGPASKLFGEAFYKDVLRILK-PDGICCNQGE  211 (304)
T ss_dssp             TTCEEEEEEECC---------CCHHHHHHHHHHEE-EEEEEEEEEC
T ss_pred             CCceeEEEECCCCccccchhhhHHHHHHHHHHhcC-CCcEEEEecC
Confidence            6789999998776654 22    579999999999 9999999654

>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}

Probab=99.46  E-value=8.6e-14  Score=117.00  Aligned_cols=96  Identities=9%  Similarity=-0.058  Sum_probs=72.4

Q ss_pred             CCCCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhcC--C------CceEE--eCCCCchhhhhhccCCCCce
Q 037961           31 TPKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKL--P------NIRYQ--LTPTMSITELEQNVATQSSV  100 (262)
Q Consensus        31 ~~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~--~------~~~~~--~~~~~~~~~~~~~~~~~~~~  100 (262)
                      .+++.+|||+|||+|.++..+++. .+|+|+|+++ |+..+++.  +      ++.++  ++|      +.++  ++++|
T Consensus        72 ~~~g~~VLDlGcGtG~~s~~la~~-~~V~gvD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D------~~~l--~~~~f  141 (265)
T 2oxt_A           72 VELTGRVVDLGCGRGGWSYYAASR-PHVMDVRAYT-LGVGGHEVPRITESYGWNIVKFKSRVD------IHTL--PVERT  141 (265)
T ss_dssp             CCCCEEEEEESCTTSHHHHHHHTS-TTEEEEEEEC-CCCSSCCCCCCCCBTTGGGEEEECSCC------TTTS--CCCCC
T ss_pred             CCCCCEEEEeCcCCCHHHHHHHHc-CcEEEEECch-hhhhhhhhhhhhhccCCCeEEEecccC------HhHC--CCCCC
Confidence            357889999999999999999988 8999999998 65444322  2      56666  544      4444  46789


Q ss_pred             eeEEEccccccC-C----hh---HHHHHHHHhhcCCCe--EEEEEecC
Q 037961          101 DLVTIASALHWF-D----LP---QFYKQVKWVLKKPSG--VIAAWTYT  138 (262)
Q Consensus       101 D~V~~~~~~~~~-d----~~---~~l~~~~r~Lk~pgG--~l~i~~~~  138 (262)
                      |+|+|..+ ++. +    ..   .+++++.++|| |||  .|++-.+.
T Consensus       142 D~V~sd~~-~~~~~~~~d~~~~l~~L~~~~r~Lk-pGG~~~fv~kv~~  187 (265)
T 2oxt_A          142 DVIMCDVG-ESSPKWSVESERTIKILELLEKWKV-KNPSADFVVKVLC  187 (265)
T ss_dssp             SEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHH-HCTTCEEEEEESC
T ss_pred             cEEEEeCc-ccCCccchhHHHHHHHHHHHHHHhc-cCCCeEEEEEeCC
Confidence            99999877 443 3    22   37899999999 999  88884444

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=99.45  E-value=4.1e-13  Score=110.44  Aligned_cols=118  Identities=19%  Similarity=0.198  Sum_probs=81.4

Q ss_pred             HHhhCCCChHHHHHHHHhhC-----CCCCeEEEEcCcccHhHHHHHhh---CCeEEEEcCCHHHH----HHHhcCCCceE
Q 037961           12 YAVARPNYPKELFKLIASKT-----PKRNLAWDVGTRSGQAAASLAQI---YQHVIATDTSPKQL----KFAIKLPNIRY   79 (262)
Q Consensus        12 Y~~~rp~yp~~~~~~l~~~~-----~~~~~vlDvGcG~G~~~~~l~~~---~~~v~~vD~s~~~~----~~a~~~~~~~~   79 (262)
                      |+.+.| |-..+...++..+     .++.+|||+|||+|..+..+++.   ..+|+|+|+|+.|+    +.+++..++.+
T Consensus        51 yr~w~~-~~skla~~ll~~l~~~~l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r~nv~~  129 (232)
T 3id6_C           51 YREWNA-FRSKLAGAILKGLKTNPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRRPNIFP  129 (232)
T ss_dssp             EEECCT-TTCHHHHHHHTTCSCCSCCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHCTTEEE
T ss_pred             hhhhch-HHHHHHHHHHhhhhhcCCCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCeEE
Confidence            444444 3345555555443     47899999999999999999885   34899999999885    44555678999


Q ss_pred             EeCCCCchhhhhhccCCCCceeeEEEccccccCChhHH-HHHHHHhhcCCCeEEEEEe
Q 037961           80 QLTPTMSITELEQNVATQSSVDLVTIASALHWFDLPQF-YKQVKWVLKKPSGVIAAWT  136 (262)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~~~~d~~~~-l~~~~r~Lk~pgG~l~i~~  136 (262)
                      +.+|...   ........++||+|++..+.  .+.... ...+.++|| |||.|++..
T Consensus       130 i~~Da~~---~~~~~~~~~~~D~I~~d~a~--~~~~~il~~~~~~~Lk-pGG~lvisi  181 (232)
T 3id6_C          130 LLADARF---PQSYKSVVENVDVLYVDIAQ--PDQTDIAIYNAKFFLK-VNGDMLLVI  181 (232)
T ss_dssp             EECCTTC---GGGTTTTCCCEEEEEECCCC--TTHHHHHHHHHHHHEE-EEEEEEEEE
T ss_pred             EEccccc---chhhhccccceEEEEecCCC--hhHHHHHHHHHHHhCC-CCeEEEEEE
Confidence            9887111   11111124689999998664  344444 456666999 999999853

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=99.45  E-value=4.1e-13  Score=109.93  Aligned_cols=103  Identities=17%  Similarity=0.161  Sum_probs=78.3

Q ss_pred             HHHHHHhhCC--CCCeEEEEcCcccHhHHHHHhh---CCeEEEEcCCHHHHHHHhcC--------CCceEEeCCCCchhh
Q 037961           23 LFKLIASKTP--KRNLAWDVGTRSGQAAASLAQI---YQHVIATDTSPKQLKFAIKL--------PNIRYQLTPTMSITE   89 (262)
Q Consensus        23 ~~~~l~~~~~--~~~~vlDvGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~--------~~~~~~~~~~~~~~~   89 (262)
                      ++..+....+  +..+|||+|||+|..+..++..   +.+|+++|+|+.+++.|+++        .++++..++      
T Consensus        44 ~l~~l~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gd------  117 (221)
T 3dr5_A           44 LLTTLAATTNGNGSTGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSR------  117 (221)
T ss_dssp             HHHHHHHHSCCTTCCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSC------
T ss_pred             HHHHHHHhhCCCCCCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcC------
Confidence            3444444433  2348999999999999999885   57999999999999999852        357888765      


Q ss_pred             hhh-cc-CCCCceeeEEEccccccCChhHHHHHHHHhhcCCCeEEEE
Q 037961           90 LEQ-NV-ATQSSVDLVTIASALHWFDLPQFYKQVKWVLKKPSGVIAA  134 (262)
Q Consensus        90 ~~~-~~-~~~~~~D~V~~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i  134 (262)
                      +.+ ++ +++++||+|++....  -+...+++++.++|| |||+|++
T Consensus       118 a~~~l~~~~~~~fD~V~~d~~~--~~~~~~l~~~~~~Lk-pGG~lv~  161 (221)
T 3dr5_A          118 PLDVMSRLANDSYQLVFGQVSP--MDLKALVDAAWPLLR-RGGALVL  161 (221)
T ss_dssp             HHHHGGGSCTTCEEEEEECCCT--TTHHHHHHHHHHHEE-EEEEEEE
T ss_pred             HHHHHHHhcCCCcCeEEEcCcH--HHHHHHHHHHHHHcC-CCcEEEE
Confidence            322 22 346899999986432  156779999999999 9999998

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=99.45  E-value=7.1e-13  Score=112.04  Aligned_cols=100  Identities=18%  Similarity=0.226  Sum_probs=79.4

Q ss_pred             CCCCCeEEEEcCcccHhHHHHHhh--CCeEEEEcCCHHHHHHHhcC----------CCceEEeCCCCchhhhhh-ccCCC
Q 037961           31 TPKRNLAWDVGTRSGQAAASLAQI--YQHVIATDTSPKQLKFAIKL----------PNIRYQLTPTMSITELEQ-NVATQ   97 (262)
Q Consensus        31 ~~~~~~vlDvGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~----------~~~~~~~~~~~~~~~~~~-~~~~~   97 (262)
                      .+.+.+|||+|||+|.++..++++  ..+|+++|+++.+++.|+++          ++++++.+|      +.. ++..+
T Consensus        73 ~~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D------~~~~l~~~~  146 (275)
T 1iy9_A           73 HPNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDD------GFMHIAKSE  146 (275)
T ss_dssp             SSSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESC------SHHHHHTCC
T ss_pred             CCCCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECc------HHHHHhhCC
Confidence            456789999999999999999987  36999999999999998852          467788776      222 22245


Q ss_pred             CceeeEEEccccccCC-----hhHHHHHHHHhhcCCCeEEEEEec
Q 037961           98 SSVDLVTIASALHWFD-----LPQFYKQVKWVLKKPSGVIAAWTY  137 (262)
Q Consensus        98 ~~~D~V~~~~~~~~~d-----~~~~l~~~~r~Lk~pgG~l~i~~~  137 (262)
                      ++||+|++....++..     ...+++++.++|+ |||++++...
T Consensus       147 ~~fD~Ii~d~~~~~~~~~~l~~~~~~~~~~~~L~-pgG~lv~~~~  190 (275)
T 1iy9_A          147 NQYDVIMVDSTEPVGPAVNLFTKGFYAGIAKALK-EDGIFVAQTD  190 (275)
T ss_dssp             SCEEEEEESCSSCCSCCCCCSTTHHHHHHHHHEE-EEEEEEEECC
T ss_pred             CCeeEEEECCCCCCCcchhhhHHHHHHHHHHhcC-CCcEEEEEcC
Confidence            7899999977665432     3679999999999 9999999653

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=99.45  E-value=5.3e-13  Score=114.02  Aligned_cols=101  Identities=18%  Similarity=0.175  Sum_probs=76.5

Q ss_pred             CCCCCeEEEEcCcccHhHHHHHhh--CCeEEEEcCCHHHHHHHhcC----------CCceEEeCCCCchhhhhh-ccCCC
Q 037961           31 TPKRNLAWDVGTRSGQAAASLAQI--YQHVIATDTSPKQLKFAIKL----------PNIRYQLTPTMSITELEQ-NVATQ   97 (262)
Q Consensus        31 ~~~~~~vlDvGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~----------~~~~~~~~~~~~~~~~~~-~~~~~   97 (262)
                      .+++.+|||+|||+|..+..++++  ..+|+++|+|+.+++.|+++          ++++++.+|      +.. ++..+
T Consensus        88 ~~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D------~~~~l~~~~  161 (296)
T 1inl_A           88 HPNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIAN------GAEYVRKFK  161 (296)
T ss_dssp             SSSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESC------HHHHGGGCS
T ss_pred             CCCCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECc------HHHHHhhCC
Confidence            456689999999999999999987  46999999999999988752          467777765      222 22245


Q ss_pred             CceeeEEEccccccCC------hhHHHHHHHHhhcCCCeEEEEEecC
Q 037961           98 SSVDLVTIASALHWFD------LPQFYKQVKWVLKKPSGVIAAWTYT  138 (262)
Q Consensus        98 ~~~D~V~~~~~~~~~d------~~~~l~~~~r~Lk~pgG~l~i~~~~  138 (262)
                      ++||+|++...-+|+.      ...+++++.++|+ |||+|++...+
T Consensus       162 ~~fD~Ii~d~~~~~~~~~~~l~~~~~l~~~~~~Lk-pgG~lv~~~~~  207 (296)
T 1inl_A          162 NEFDVIIIDSTDPTAGQGGHLFTEEFYQACYDALK-EDGVFSAETED  207 (296)
T ss_dssp             SCEEEEEEEC----------CCSHHHHHHHHHHEE-EEEEEEEECCC
T ss_pred             CCceEEEEcCCCcccCchhhhhHHHHHHHHHHhcC-CCcEEEEEccC
Confidence            7899999876555442      3679999999999 99999996543

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=99.45  E-value=3.4e-13  Score=111.03  Aligned_cols=98  Identities=17%  Similarity=0.087  Sum_probs=73.8

Q ss_pred             CCCCeEEEEcCcccHhHHHHHhh---CCeEEEEcCCHHHHH----HHhcCCCceEEeCCCCchhhhhhccCCCCceeeEE
Q 037961           32 PKRNLAWDVGTRSGQAAASLAQI---YQHVIATDTSPKQLK----FAIKLPNIRYQLTPTMSITELEQNVATQSSVDLVT  104 (262)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~----~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~  104 (262)
                      .++.+|||+|||+|.++..+++.   ..+|+|+|+|+.|++    .+++..++.+..++..   +...++..+++||+|+
T Consensus        76 ~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~~~v~~~~~d~~---~~~~~~~~~~~~D~V~  152 (233)
T 2ipx_A           76 KPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKRTNIIPVIEDAR---HPHKYRMLIAMVDVIF  152 (233)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHCTTEEEECSCTT---CGGGGGGGCCCEEEEE
T ss_pred             CCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhccCCeEEEEcccC---ChhhhcccCCcEEEEE
Confidence            46789999999999999999987   269999999977554    4445578888887611   1112344567899999


Q ss_pred             EccccccCCh-hHHHHHHHHhhcCCCeEEEEE
Q 037961          105 IASALHWFDL-PQFYKQVKWVLKKPSGVIAAW  135 (262)
Q Consensus       105 ~~~~~~~~d~-~~~l~~~~r~Lk~pgG~l~i~  135 (262)
                      +..+  ..+. ..++.++.++|| |||.+++.
T Consensus       153 ~~~~--~~~~~~~~~~~~~~~Lk-pgG~l~i~  181 (233)
T 2ipx_A          153 ADVA--QPDQTRIVALNAHTFLR-NGGHFVIS  181 (233)
T ss_dssp             ECCC--CTTHHHHHHHHHHHHEE-EEEEEEEE
T ss_pred             EcCC--CccHHHHHHHHHHHHcC-CCeEEEEE
Confidence            9655  2233 345889999999 99999983

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=99.44  E-value=3.9e-13  Score=113.57  Aligned_cols=95  Identities=16%  Similarity=0.157  Sum_probs=78.6

Q ss_pred             CCCCeEEEEcCcccHhHHHHHhh---CCeEEEEcCCHHHHHHHhcC-------CCceEEeCCCCchhhhhhccCCCCcee
Q 037961           32 PKRNLAWDVGTRSGQAAASLAQI---YQHVIATDTSPKQLKFAIKL-------PNIRYQLTPTMSITELEQNVATQSSVD  101 (262)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~D  101 (262)
                      .++.+|||+|||+|..+..+++.   +.+|+++|+++.+++.++++       .++++..+|      +.+ ++++++||
T Consensus       109 ~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d------~~~-~~~~~~fD  181 (275)
T 1yb2_A          109 RPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSD------IAD-FISDQMYD  181 (275)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSC------TTT-CCCSCCEE
T ss_pred             CCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECc------hhc-cCcCCCcc
Confidence            46789999999999999999987   68999999999999988752       357777665      333 34667899


Q ss_pred             eEEEccccccCChhHHHHHHHHhhcCCCeEEEEEecC
Q 037961          102 LVTIASALHWFDLPQFYKQVKWVLKKPSGVIAAWTYT  138 (262)
Q Consensus       102 ~V~~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~~  138 (262)
                      +|++    |.-++..+++++.++|| |||.+++....
T Consensus       182 ~Vi~----~~~~~~~~l~~~~~~Lk-pgG~l~i~~~~  213 (275)
T 1yb2_A          182 AVIA----DIPDPWNHVQKIASMMK-PGSVATFYLPN  213 (275)
T ss_dssp             EEEE----CCSCGGGSHHHHHHTEE-EEEEEEEEESS
T ss_pred             EEEE----cCcCHHHHHHHHHHHcC-CCCEEEEEeCC
Confidence            9998    34488899999999999 99999996644

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}

Probab=99.44  E-value=4.8e-13  Score=117.47  Aligned_cols=97  Identities=19%  Similarity=0.163  Sum_probs=79.2

Q ss_pred             CCCCeEEEEcCcccHhHHHHHhh--CCeEEEEcCCHHHHHHHhcC-------CCceEEeCCCCchhhhhhc--cCCCCce
Q 037961           32 PKRNLAWDVGTRSGQAAASLAQI--YQHVIATDTSPKQLKFAIKL-------PNIRYQLTPTMSITELEQN--VATQSSV  100 (262)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~~~~~--~~~~~~~  100 (262)
                      ....+|||||||+|.++..+++.  +.+++++|+ +.+++.|++.       .++++..+|      +.+.  |++ ++|
T Consensus       178 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d------~~~~~~~~p-~~~  249 (363)
T 3dp7_A          178 HHPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDL-PQQLEMMRKQTAGLSGSERIHGHGAN------LLDRDVPFP-TGF  249 (363)
T ss_dssp             GCCSEEEEESCTTCHHHHHHHHHSTTCEEEEEEC-HHHHHHHHHHHTTCTTGGGEEEEECC------CCSSSCCCC-CCC
T ss_pred             cCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeC-HHHHHHHHHHHHhcCcccceEEEEcc------ccccCCCCC-CCc
Confidence            35678999999999999999985  568999999 9999998853       368888876      3332  344 689


Q ss_pred             eeEEEccccccC-Ch--hHHHHHHHHhhcCCCeEEEEEec
Q 037961          101 DLVTIASALHWF-DL--PQFYKQVKWVLKKPSGVIAAWTY  137 (262)
Q Consensus       101 D~V~~~~~~~~~-d~--~~~l~~~~r~Lk~pgG~l~i~~~  137 (262)
                      |+|++..++|++ |.  .+++++++++|| |||+|++...
T Consensus       250 D~v~~~~vlh~~~~~~~~~~l~~~~~~L~-pgG~l~i~e~  288 (363)
T 3dp7_A          250 DAVWMSQFLDCFSEEEVISILTRVAQSIG-KDSKVYIMET  288 (363)
T ss_dssp             SEEEEESCSTTSCHHHHHHHHHHHHHHCC-TTCEEEEEEC
T ss_pred             CEEEEechhhhCCHHHHHHHHHHHHHhcC-CCcEEEEEee
Confidence            999999999977 44  368999999999 9999998654

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6

Probab=99.44  E-value=3.2e-13  Score=117.06  Aligned_cols=95  Identities=22%  Similarity=0.179  Sum_probs=76.7

Q ss_pred             CCCCeEEEEcCcccHhHHHHHhhCC-eEEEEcCCHHHHHHHhcC-------CCceEEeCCCCchhhhhhccCCCCceeeE
Q 037961           32 PKRNLAWDVGTRSGQAAASLAQIYQ-HVIATDTSPKQLKFAIKL-------PNIRYQLTPTMSITELEQNVATQSSVDLV  103 (262)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~D~V  103 (262)
                      .++.+|||+|||+|.++..+++.+. +|+|+|+| .|++.|++.       .+++++.++      ++++++++++||+|
T Consensus        37 ~~~~~VLDiGcGtG~ls~~la~~g~~~v~~vD~s-~~~~~a~~~~~~~~~~~~i~~~~~d------~~~~~~~~~~~D~I  109 (328)
T 1g6q_1           37 FKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMS-SIIEMAKELVELNGFSDKITLLRGK------LEDVHLPFPKVDII  109 (328)
T ss_dssp             HTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESS-THHHHHHHHHHHTTCTTTEEEEESC------TTTSCCSSSCEEEE
T ss_pred             cCCCEEEEecCccHHHHHHHHHCCCCEEEEEChH-HHHHHHHHHHHHcCCCCCEEEEECc------hhhccCCCCcccEE
Confidence            3667899999999999999998875 89999999 689888752       357888765      55566667899999


Q ss_pred             EEccccc---cC-ChhHHHHHHHHhhcCCCeEEEE
Q 037961          104 TIASALH---WF-DLPQFYKQVKWVLKKPSGVIAA  134 (262)
Q Consensus       104 ~~~~~~~---~~-d~~~~l~~~~r~Lk~pgG~l~i  134 (262)
                      ++....+   +. ++..++.++.++|| |||.++.
T Consensus       110 vs~~~~~~l~~~~~~~~~l~~~~~~Lk-pgG~li~  143 (328)
T 1g6q_1          110 ISEWMGYFLLYESMMDTVLYARDHYLV-EGGLIFP  143 (328)
T ss_dssp             EECCCBTTBSTTCCHHHHHHHHHHHEE-EEEEEES
T ss_pred             EEeCchhhcccHHHHHHHHHHHHhhcC-CCeEEEE
Confidence            9975433   33 56789999999999 9999973

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=99.44  E-value=1.5e-13  Score=112.68  Aligned_cols=100  Identities=9%  Similarity=0.056  Sum_probs=78.3

Q ss_pred             HHHHHhhCCCCCeEEEEcCcccHhHHHHHhh-C-------CeEEEEcCCHHHHHHHhcC-----------CCceEEeCCC
Q 037961           24 FKLIASKTPKRNLAWDVGTRSGQAAASLAQI-Y-------QHVIATDTSPKQLKFAIKL-----------PNIRYQLTPT   84 (262)
Q Consensus        24 ~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~-~-------~~v~~vD~s~~~~~~a~~~-----------~~~~~~~~~~   84 (262)
                      .+.+.....++.+|||+|||+|..+..+++. +       .+|+++|+++.+++.++++           .++.+..++ 
T Consensus        75 ~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d-  153 (227)
T 1r18_A           75 LEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGD-  153 (227)
T ss_dssp             HHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESC-
T ss_pred             HHHHHhhCCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECC-
Confidence            3333334567789999999999999999884 3       4899999999999998752           467888776 


Q ss_pred             CchhhhhhccCCC-CceeeEEEccccccCChhHHHHHHHHhhcCCCeEEEEEe
Q 037961           85 MSITELEQNVATQ-SSVDLVTIASALHWFDLPQFYKQVKWVLKKPSGVIAAWT  136 (262)
Q Consensus        85 ~~~~~~~~~~~~~-~~~D~V~~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~  136 (262)
                           +.. ++++ ++||+|++..+++++.     +++.++|| |||++++..
T Consensus       154 -----~~~-~~~~~~~fD~I~~~~~~~~~~-----~~~~~~Lk-pgG~lvi~~  194 (227)
T 1r18_A          154 -----GRK-GYPPNAPYNAIHVGAAAPDTP-----TELINQLA-SGGRLIVPV  194 (227)
T ss_dssp             -----GGG-CCGGGCSEEEEEECSCBSSCC-----HHHHHTEE-EEEEEEEEE
T ss_pred             -----ccc-CCCcCCCccEEEECCchHHHH-----HHHHHHhc-CCCEEEEEE
Confidence                 322 2233 7899999999998764     68899999 999999844

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*

Probab=99.44  E-value=4.1e-13  Score=118.09  Aligned_cols=96  Identities=15%  Similarity=0.107  Sum_probs=78.8

Q ss_pred             CCCCeEEEEcCcccHhHHHHHhh--CCeEEEEcCCHHHHHHHhcC-------CCceEEeCCCCchhhhhhccCCCCceee
Q 037961           32 PKRNLAWDVGTRSGQAAASLAQI--YQHVIATDTSPKQLKFAIKL-------PNIRYQLTPTMSITELEQNVATQSSVDL  102 (262)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~D~  102 (262)
                      ++..+|||||||+|..+..+++.  ..+++++|+ +.+++.+++.       .++++..+|      +.+ +++. .||+
T Consensus       181 ~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d------~~~-~~~~-~~D~  251 (374)
T 1qzz_A          181 SAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGD------FFK-PLPV-TADV  251 (374)
T ss_dssp             TTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECC------TTS-CCSC-CEEE
T ss_pred             CCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeC-HHHHHHHHHHHHhcCCCCceEEEeCC------CCC-cCCC-CCCE
Confidence            46789999999999999999987  468999999 9999998752       368888876      222 2233 4999


Q ss_pred             EEEccccccC-Chh--HHHHHHHHhhcCCCeEEEEEec
Q 037961          103 VTIASALHWF-DLP--QFYKQVKWVLKKPSGVIAAWTY  137 (262)
Q Consensus       103 V~~~~~~~~~-d~~--~~l~~~~r~Lk~pgG~l~i~~~  137 (262)
                      |++..++|++ +..  ++++++.++|| |||+|++...
T Consensus       252 v~~~~vl~~~~~~~~~~~l~~~~~~L~-pgG~l~i~e~  288 (374)
T 1qzz_A          252 VLLSFVLLNWSDEDALTILRGCVRALE-PGGRLLVLDR  288 (374)
T ss_dssp             EEEESCGGGSCHHHHHHHHHHHHHHEE-EEEEEEEEEC
T ss_pred             EEEeccccCCCHHHHHHHHHHHHHhcC-CCcEEEEEec
Confidence            9999999988 443  79999999999 9999998665

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=99.44  E-value=3.6e-13  Score=110.17  Aligned_cols=102  Identities=19%  Similarity=0.183  Sum_probs=78.7

Q ss_pred             HHHHHhhCCCCCeEEEEcCcccHhHHHHHhh-C--CeEEEEcCCHHHHHHHhcC-----------CCceEEeCCCCchhh
Q 037961           24 FKLIASKTPKRNLAWDVGTRSGQAAASLAQI-Y--QHVIATDTSPKQLKFAIKL-----------PNIRYQLTPTMSITE   89 (262)
Q Consensus        24 ~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~-~--~~v~~vD~s~~~~~~a~~~-----------~~~~~~~~~~~~~~~   89 (262)
                      ++.+.....++.+|||+|||+|..+..+++. +  .+|+++|+|+.+++.++++           .++.+..++      
T Consensus        68 l~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d------  141 (226)
T 1i1n_A           68 LELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGD------  141 (226)
T ss_dssp             HHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESC------
T ss_pred             HHHHHhhCCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECC------
Confidence            3333333567889999999999999999986 3  5999999999999988742           367777765      


Q ss_pred             hhhccCCCCceeeEEEccccccCChhHHHHHHHHhhcCCCeEEEEEec
Q 037961           90 LEQNVATQSSVDLVTIASALHWFDLPQFYKQVKWVLKKPSGVIAAWTY  137 (262)
Q Consensus        90 ~~~~~~~~~~~D~V~~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~  137 (262)
                      +......+++||+|++...++.+     ++++.++|| |||++++...
T Consensus       142 ~~~~~~~~~~fD~i~~~~~~~~~-----~~~~~~~Lk-pgG~lv~~~~  183 (226)
T 1i1n_A          142 GRMGYAEEAPYDAIHVGAAAPVV-----PQALIDQLK-PGGRLILPVG  183 (226)
T ss_dssp             GGGCCGGGCCEEEEEECSBBSSC-----CHHHHHTEE-EEEEEEEEES
T ss_pred             cccCcccCCCcCEEEECCchHHH-----HHHHHHhcC-CCcEEEEEEe
Confidence            33333346789999998888654     468899999 9999998543

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31

Probab=99.43  E-value=2.5e-13  Score=121.14  Aligned_cols=111  Identities=14%  Similarity=0.131  Sum_probs=81.3

Q ss_pred             HHHHHHHhhC--CCCCeEEEEcCcccHhHHHHHhh-C-CeEEEEcCCHHHHHHH-------hc--------CCCceEEeC
Q 037961           22 ELFKLIASKT--PKRNLAWDVGTRSGQAAASLAQI-Y-QHVIATDTSPKQLKFA-------IK--------LPNIRYQLT   82 (262)
Q Consensus        22 ~~~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~-~-~~v~~vD~s~~~~~~a-------~~--------~~~~~~~~~   82 (262)
                      .++..++..+  .++.+|||+|||+|.++..++.. + .+|+|+|+++.+++.|       ++        ..++.+..+
T Consensus       229 ~~v~~ml~~l~l~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~g  308 (433)
T 1u2z_A          229 NFLSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLK  308 (433)
T ss_dssp             HHHHHHHHHTTCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEES
T ss_pred             HHHHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEEc
Confidence            3444555444  47789999999999999999985 4 4799999999998887       53        246778776


Q ss_pred             CCCchhhhhhccCCCCceeeEEEccccccCChhHHHHHHHHhhcCCCeEEEEE
Q 037961           83 PTMSITELEQNVATQSSVDLVTIASALHWFDLPQFYKQVKWVLKKPSGVIAAW  135 (262)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~D~V~~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~  135 (262)
                      +.+..+  ..+....++||+|+++..++.-+...+++++.++|| |||.|++.
T Consensus       309 D~~~~~--~~~~~~~~~FDvIvvn~~l~~~d~~~~L~el~r~LK-pGG~lVi~  358 (433)
T 1u2z_A          309 KSFVDN--NRVAELIPQCDVILVNNFLFDEDLNKKVEKILQTAK-VGCKIISL  358 (433)
T ss_dssp             SCSTTC--HHHHHHGGGCSEEEECCTTCCHHHHHHHHHHHTTCC-TTCEEEES
T ss_pred             Cccccc--cccccccCCCCEEEEeCccccccHHHHHHHHHHhCC-CCeEEEEe
Confidence            521100  001001368999999877744478889999999999 99999984

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=99.43  E-value=5.8e-13  Score=114.11  Aligned_cols=114  Identities=11%  Similarity=0.109  Sum_probs=85.5

Q ss_pred             CChHHHHHHHHh---hCCCC--CeEEEEcCcccHhHHHHHhh--CCeEEEEcCCHHHHHHHhcC------CCceEEeCCC
Q 037961           18 NYPKELFKLIAS---KTPKR--NLAWDVGTRSGQAAASLAQI--YQHVIATDTSPKQLKFAIKL------PNIRYQLTPT   84 (262)
Q Consensus        18 ~yp~~~~~~l~~---~~~~~--~~vlDvGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~------~~~~~~~~~~   84 (262)
                      .|.+.+...+..   ..+..  .+|||||||+|.+++.+++.  +.+|++||+++.|++.|+++      ++++++.+| 
T Consensus        69 ~Y~e~m~~~~~~l~~~~p~p~~~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~D-  147 (317)
T 3gjy_A           69 EYMRWIATGARAFIDAHQDASKLRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPRAPRVKIRVDD-  147 (317)
T ss_dssp             HHHHHHHHHHHHHHHHHSCGGGCEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESC-
T ss_pred             HHHHHHHHHHHhhcccCCCCCCCEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccCCCceEEEECc-
Confidence            355666665553   23433  48999999999999999983  56999999999999999863      467888776 


Q ss_pred             Cchhhhhhc--cCCCCceeeEEEccccccC-----ChhHHHHHHHHhhcCCCeEEEEEecC
Q 037961           85 MSITELEQN--VATQSSVDLVTIASALHWF-----DLPQFYKQVKWVLKKPSGVIAAWTYT  138 (262)
Q Consensus        85 ~~~~~~~~~--~~~~~~~D~V~~~~~~~~~-----d~~~~l~~~~r~Lk~pgG~l~i~~~~  138 (262)
                           +..+  ..++++||+|++....++.     ....+++++.++|+ |||+|++....
T Consensus       148 -----a~~~l~~~~~~~fDvIi~D~~~~~~~~~~L~t~efl~~~~r~Lk-pgGvlv~~~~~  202 (317)
T 3gjy_A          148 -----ARMVAESFTPASRDVIIRDVFAGAITPQNFTTVEFFEHCHRGLA-PGGLYVANCGD  202 (317)
T ss_dssp             -----HHHHHHTCCTTCEEEEEECCSTTSCCCGGGSBHHHHHHHHHHEE-EEEEEEEEEEE
T ss_pred             -----HHHHHhhccCCCCCEEEECCCCccccchhhhHHHHHHHHHHhcC-CCcEEEEEecC
Confidence                 3222  2346789999997655543     23679999999999 99999986543

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*

Probab=99.43  E-value=9.5e-13  Score=115.32  Aligned_cols=104  Identities=13%  Similarity=0.116  Sum_probs=82.3

Q ss_pred             HHHHHhhC--CCCCeEEEEcCcccHhHHHHHhh--CCeEEEEcCCHHHHHHHhcC-------CCceEEeCCCCchhhhhh
Q 037961           24 FKLIASKT--PKRNLAWDVGTRSGQAAASLAQI--YQHVIATDTSPKQLKFAIKL-------PNIRYQLTPTMSITELEQ   92 (262)
Q Consensus        24 ~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~~~~   92 (262)
                      ...+....  ++..+|||||||+|.++..+++.  +.+++++|+ +.+++.+++.       .++++..+|      +.+
T Consensus       179 ~~~l~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d------~~~  251 (359)
T 1x19_A          179 IQLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVD------IYK  251 (359)
T ss_dssp             HHHHHHHCCCTTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCTTTEEEEECC------TTT
T ss_pred             HHHHHHhcCCCCCCEEEEECCcccHHHHHHHHHCCCCeEEEEec-HHHHHHHHHHHHhcCCCCCEEEEeCc------ccc
Confidence            34444443  46789999999999999999987  458999999 9999998752       248888776      434


Q ss_pred             ccCCCCceeeEEEccccccC-C--hhHHHHHHHHhhcCCCeEEEEEec
Q 037961           93 NVATQSSVDLVTIASALHWF-D--LPQFYKQVKWVLKKPSGVIAAWTY  137 (262)
Q Consensus        93 ~~~~~~~~D~V~~~~~~~~~-d--~~~~l~~~~r~Lk~pgG~l~i~~~  137 (262)
                      .++++  +|+|++..++|++ |  ..++++++.++|| |||+|++...
T Consensus       252 ~~~~~--~D~v~~~~vlh~~~d~~~~~~l~~~~~~L~-pgG~l~i~e~  296 (359)
T 1x19_A          252 ESYPE--ADAVLFCRILYSANEQLSTIMCKKAFDAMR-SGGRLLILDM  296 (359)
T ss_dssp             SCCCC--CSEEEEESCGGGSCHHHHHHHHHHHHTTCC-TTCEEEEEEE
T ss_pred             CCCCC--CCEEEEechhccCCHHHHHHHHHHHHHhcC-CCCEEEEEec
Confidence            44444  3999999999977 4  5779999999999 9999988554

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=99.43  E-value=6.2e-13  Score=114.53  Aligned_cols=99  Identities=20%  Similarity=0.232  Sum_probs=79.8

Q ss_pred             CCCCCeEEEEcCcccHhHHHHHhh--CCeEEEEcCCHHHHHHHhcC-----------CCceEEeCCCCchhhhhh-ccCC
Q 037961           31 TPKRNLAWDVGTRSGQAAASLAQI--YQHVIATDTSPKQLKFAIKL-----------PNIRYQLTPTMSITELEQ-NVAT   96 (262)
Q Consensus        31 ~~~~~~vlDvGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~-----------~~~~~~~~~~~~~~~~~~-~~~~   96 (262)
                      .++..+|||||||+|..+..++++  ..+|+++|+++.+++.|++.           ++++++.+|      +.. ++..
T Consensus        75 ~~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D------~~~~l~~~  148 (314)
T 1uir_A           75 HPEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDD------ARAYLERT  148 (314)
T ss_dssp             SSCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESC------HHHHHHHC
T ss_pred             CCCCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEch------HHHHHHhc
Confidence            466789999999999999999986  56899999999999998752           467777776      322 2224


Q ss_pred             CCceeeEEEcccccc---CC-----hhHHHHHHHHhhcCCCeEEEEEe
Q 037961           97 QSSVDLVTIASALHW---FD-----LPQFYKQVKWVLKKPSGVIAAWT  136 (262)
Q Consensus        97 ~~~~D~V~~~~~~~~---~d-----~~~~l~~~~r~Lk~pgG~l~i~~  136 (262)
                      +++||+|++....|+   -.     ...+++++.++|+ |||+|+++.
T Consensus       149 ~~~fD~Ii~d~~~~~~~~~~~~~l~~~~~l~~~~~~Lk-pgG~lv~~~  195 (314)
T 1uir_A          149 EERYDVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLN-PGGVMGMQT  195 (314)
T ss_dssp             CCCEEEEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEE-EEEEEEEEE
T ss_pred             CCCccEEEECCCCcccccCcchhccHHHHHHHHHHhcC-CCcEEEEEc
Confidence            678999999888777   21     3678999999999 999999854

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20

Probab=99.43  E-value=3.4e-13  Score=108.69  Aligned_cols=93  Identities=19%  Similarity=0.213  Sum_probs=75.9

Q ss_pred             CCCeEEEEcCcccHhHHHHHhh--CCeEEEEcCCHHHHHHHhcC------CCceEEeCCCCchhhhhhccCCCCceeeEE
Q 037961           33 KRNLAWDVGTRSGQAAASLAQI--YQHVIATDTSPKQLKFAIKL------PNIRYQLTPTMSITELEQNVATQSSVDLVT  104 (262)
Q Consensus        33 ~~~~vlDvGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~  104 (262)
                      ++.+|||+|||+|..+..++..  +.+++++|+|+.+++.+++.      .++.+..++      +.+.+ +.++||+|+
T Consensus        65 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d------~~~~~-~~~~~D~i~  137 (207)
T 1jsx_A           65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSR------VEEFP-SEPPFDGVI  137 (207)
T ss_dssp             CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECC------TTTSC-CCSCEEEEE
T ss_pred             CCCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEecc------hhhCC-ccCCcCEEE
Confidence            4679999999999999999986  67999999999999988752      457787765      33333 457899999


Q ss_pred             EccccccCChhHHHHHHHHhhcCCCeEEEEEe
Q 037961          105 IASALHWFDLPQFYKQVKWVLKKPSGVIAAWT  136 (262)
Q Consensus       105 ~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~  136 (262)
                      ++.   .-+...+++++.++|+ |||.+++..
T Consensus       138 ~~~---~~~~~~~l~~~~~~L~-~gG~l~~~~  165 (207)
T 1jsx_A          138 SRA---FASLNDMVSWCHHLPG-EQGRFYALK  165 (207)
T ss_dssp             CSC---SSSHHHHHHHHTTSEE-EEEEEEEEE
T ss_pred             Eec---cCCHHHHHHHHHHhcC-CCcEEEEEe
Confidence            753   2367889999999999 999999854

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=99.42  E-value=8.8e-13  Score=106.74  Aligned_cols=93  Identities=14%  Similarity=0.198  Sum_probs=74.7

Q ss_pred             CCCeEEEEcCcccHhHHHHHhh---CCeEEEEcCCHHHHHHHhcC-------CCceEEeCCCCchhhhhh-ccCCCCcee
Q 037961           33 KRNLAWDVGTRSGQAAASLAQI---YQHVIATDTSPKQLKFAIKL-------PNIRYQLTPTMSITELEQ-NVATQSSVD  101 (262)
Q Consensus        33 ~~~~vlDvGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~~~~-~~~~~~~~D  101 (262)
                      +..+|||+|||+|..+..++..   +.+|+++|+|+.+++.|+++       .++++..++      +.+ ++..++ ||
T Consensus        56 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d------~~~~~~~~~~-fD  128 (210)
T 3c3p_A           56 QPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGD------PLGIAAGQRD-ID  128 (210)
T ss_dssp             CCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESC------HHHHHTTCCS-EE
T ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEec------HHHHhccCCC-CC
Confidence            5678999999999999999986   67999999999999998853       257788765      322 233345 99


Q ss_pred             eEEEccccccCChhHHHHHHHHhhcCCCeEEEEE
Q 037961          102 LVTIASALHWFDLPQFYKQVKWVLKKPSGVIAAW  135 (262)
Q Consensus       102 ~V~~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~  135 (262)
                      +|++...  ..+...+++++.++|| |||.|++-
T Consensus       129 ~v~~~~~--~~~~~~~l~~~~~~Lk-pgG~lv~~  159 (210)
T 3c3p_A          129 ILFMDCD--VFNGADVLERMNRCLA-KNALLIAV  159 (210)
T ss_dssp             EEEEETT--TSCHHHHHHHHGGGEE-EEEEEEEE
T ss_pred             EEEEcCC--hhhhHHHHHHHHHhcC-CCeEEEEE
Confidence            9998732  2377889999999999 99999883

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=99.42  E-value=8.5e-13  Score=109.85  Aligned_cols=96  Identities=14%  Similarity=0.173  Sum_probs=76.2

Q ss_pred             CCCCeEEEEcCcccHhHHHHHhh---CCeEEEEcCCHHHHHHHhcC-------CCceEEeCCCCchhhhhh-ccC--CCC
Q 037961           32 PKRNLAWDVGTRSGQAAASLAQI---YQHVIATDTSPKQLKFAIKL-------PNIRYQLTPTMSITELEQ-NVA--TQS   98 (262)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~~~~-~~~--~~~   98 (262)
                      .++.+|||+|||+|..+..+++.   +.+|+++|+|+.+++.|+++       .++++..++      +.+ ++.  ..+
T Consensus        62 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d------~~~~l~~~~~~~  135 (248)
T 3tfw_A           62 TQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGP------ALQSLESLGECP  135 (248)
T ss_dssp             HTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESC------HHHHHHTCCSCC
T ss_pred             cCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcC------HHHHHHhcCCCC
Confidence            35678999999999999999987   67999999999999998853       368888876      222 221  235


Q ss_pred             ceeeEEEccccccCChhHHHHHHHHhhcCCCeEEEEEe
Q 037961           99 SVDLVTIASALHWFDLPQFYKQVKWVLKKPSGVIAAWT  136 (262)
Q Consensus        99 ~~D~V~~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~  136 (262)
                      +||+|++...  .-+...+++++.++|| |||+|++-+
T Consensus       136 ~fD~V~~d~~--~~~~~~~l~~~~~~Lk-pGG~lv~~~  170 (248)
T 3tfw_A          136 AFDLIFIDAD--KPNNPHYLRWALRYSR-PGTLIIGDN  170 (248)
T ss_dssp             CCSEEEECSC--GGGHHHHHHHHHHTCC-TTCEEEEEC
T ss_pred             CeEEEEECCc--hHHHHHHHHHHHHhcC-CCeEEEEeC
Confidence            8999998653  1256779999999999 999998843

>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*

Probab=99.42  E-value=5.7e-13  Score=111.62  Aligned_cols=106  Identities=17%  Similarity=0.181  Sum_probs=73.1

Q ss_pred             CCCeEEEEcCcc--cHhHHHHHh---hCCeEEEEcCCHHHHHHHhcC------CCceEEeCCCCchhhhhhccCCCCcee
Q 037961           33 KRNLAWDVGTRS--GQAAASLAQ---IYQHVIATDTSPKQLKFAIKL------PNIRYQLTPTMSITELEQNVATQSSVD  101 (262)
Q Consensus        33 ~~~~vlDvGcG~--G~~~~~l~~---~~~~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~D  101 (262)
                      ....+||||||+  +..+..+++   ..++|+++|.|+.|++.|+++      .++.++++|......+-.-+...++||
T Consensus        78 g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~~~~~~~v~aD~~~~~~~l~~~~~~~~~D  157 (277)
T 3giw_A           78 GIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTPEGRTAYVEADMLDPASILDAPELRDTLD  157 (277)
T ss_dssp             CCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCSSSEEEEEECCTTCHHHHHTCHHHHTTCC
T ss_pred             CCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCCCCcEEEEEecccChhhhhcccccccccC
Confidence            336899999997  334444443   268999999999999999863      247888887111110000010023344


Q ss_pred             -----eEEEccccccC-C---hhHHHHHHHHhhcCCCeEEEEEecCC
Q 037961          102 -----LVTIASALHWF-D---LPQFYKQVKWVLKKPSGVIAAWTYTM  139 (262)
Q Consensus       102 -----~V~~~~~~~~~-d---~~~~l~~~~r~Lk~pgG~l~i~~~~~  139 (262)
                           .|+++.++||+ |   +..+++++.++|+ |||+|++.....
T Consensus       158 ~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~-PGG~Lvls~~~~  203 (277)
T 3giw_A          158 LTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLP-SGSYLAMSIGTA  203 (277)
T ss_dssp             TTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSC-TTCEEEEEEECC
T ss_pred             cCCcchHHhhhhHhcCCchhhHHHHHHHHHHhCC-CCcEEEEEeccC
Confidence                 58899999999 6   3569999999999 999999965543

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=99.42  E-value=9.9e-13  Score=107.68  Aligned_cols=114  Identities=21%  Similarity=0.150  Sum_probs=81.1

Q ss_pred             hCCCChHHHHHHHHh---h--CCCCCeEEEEcCcccHhHHHHHhh-C--CeEEEEcCCHHHHHHHhc----CCCceEEeC
Q 037961           15 ARPNYPKELFKLIAS---K--TPKRNLAWDVGTRSGQAAASLAQI-Y--QHVIATDTSPKQLKFAIK----LPNIRYQLT   82 (262)
Q Consensus        15 ~rp~yp~~~~~~l~~---~--~~~~~~vlDvGcG~G~~~~~l~~~-~--~~v~~vD~s~~~~~~a~~----~~~~~~~~~   82 (262)
                      .+|.++. +...+..   .  ..++.+|||+|||+|..+..+++. +  .+|+|+|+|+.|++.+++    .+++.+..+
T Consensus        51 ~~p~~~~-~~~~i~~~l~~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~~~v~~~~~  129 (227)
T 1g8a_A           51 WNPNRSK-LGAAIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILG  129 (227)
T ss_dssp             CCTTTCH-HHHHHHTTCCCCCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEEC
T ss_pred             eCCCchh-HHHHHHhhHHhcCCCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhccCCCEEEEc
Confidence            4676644 3455532   2  246789999999999999999976 3  699999999988877653    367888887


Q ss_pred             CCCchhhhhhccCCCCceeeEEEccccccCChh-HHHHHHHHhhcCCCeEEEEE
Q 037961           83 PTMSITELEQNVATQSSVDLVTIASALHWFDLP-QFYKQVKWVLKKPSGVIAAW  135 (262)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~D~V~~~~~~~~~d~~-~~l~~~~r~Lk~pgG~l~i~  135 (262)
                      +..   +........++||+|++...  ..+.. .++.++.++|| |||.+++.
T Consensus       130 d~~---~~~~~~~~~~~~D~v~~~~~--~~~~~~~~l~~~~~~Lk-pgG~l~~~  177 (227)
T 1g8a_A          130 DAT---KPEEYRALVPKVDVIFEDVA--QPTQAKILIDNAEVYLK-RGGYGMIA  177 (227)
T ss_dssp             CTT---CGGGGTTTCCCEEEEEECCC--STTHHHHHHHHHHHHEE-EEEEEEEE
T ss_pred             cCC---CcchhhcccCCceEEEECCC--CHhHHHHHHHHHHHhcC-CCCEEEEE
Confidence            611   11111112358999998765  22333 35999999999 99999985

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=99.42  E-value=2.8e-12  Score=106.13  Aligned_cols=109  Identities=20%  Similarity=0.209  Sum_probs=84.2

Q ss_pred             CChHHHHHHHHhhC--CCCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhcC-------CCceEEeCCCCchh
Q 037961           18 NYPKELFKLIASKT--PKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKL-------PNIRYQLTPTMSIT   88 (262)
Q Consensus        18 ~yp~~~~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~   88 (262)
                      .||.... .+....  .++.+|||+|||+|.++..+++.+.+|+++|+++.+++.|+++       .++++..++     
T Consensus        75 ~~~~~~~-~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d-----  148 (248)
T 2yvl_A           75 IYPKDSF-YIALKLNLNKEKRVLEFGTGSGALLAVLSEVAGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVD-----  148 (248)
T ss_dssp             CCHHHHH-HHHHHTTCCTTCEEEEECCTTSHHHHHHHHHSSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSC-----
T ss_pred             ccchhHH-HHHHhcCCCCCCEEEEeCCCccHHHHHHHHhCCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcC-----
Confidence            3455543 444444  4778999999999999999998888999999999999998852       467777665     


Q ss_pred             hhhhccCCCCceeeEEEccccccCChhHHHHHHHHhhcCCCeEEEEEecC
Q 037961           89 ELEQNVATQSSVDLVTIASALHWFDLPQFYKQVKWVLKKPSGVIAAWTYT  138 (262)
Q Consensus        89 ~~~~~~~~~~~~D~V~~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~~  138 (262)
                       +.+..+++++||+|+++.    -++..+++++.++|+ |||.+++....
T Consensus       149 -~~~~~~~~~~~D~v~~~~----~~~~~~l~~~~~~L~-~gG~l~~~~~~  192 (248)
T 2yvl_A          149 -FKDAEVPEGIFHAAFVDV----REPWHYLEKVHKSLM-EGAPVGFLLPT  192 (248)
T ss_dssp             -TTTSCCCTTCBSEEEECS----SCGGGGHHHHHHHBC-TTCEEEEEESS
T ss_pred             -hhhcccCCCcccEEEECC----cCHHHHHHHHHHHcC-CCCEEEEEeCC
Confidence             333222457899999842    277889999999999 99999996654

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}

Probab=99.42  E-value=1.5e-12  Score=113.97  Aligned_cols=112  Identities=21%  Similarity=0.115  Sum_probs=88.0

Q ss_pred             hHHHHHHHHhhC--CCCCeEEEEcCcccHhHHHHHhhC---CeEEEEcCCHHHHHHHhcC------CCceEEeCCCCchh
Q 037961           20 PKELFKLIASKT--PKRNLAWDVGTRSGQAAASLAQIY---QHVIATDTSPKQLKFAIKL------PNIRYQLTPTMSIT   88 (262)
Q Consensus        20 p~~~~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~   88 (262)
                      .+.+...+....  .++..|||+|||+|.++..++..+   .+++|+|+|+.|++.|+++      .++++.++|     
T Consensus       188 ~~~la~~l~~~~~~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~~i~~~~~D-----  262 (354)
T 3tma_A          188 TPVLAQALLRLADARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLSWIRFLRAD-----  262 (354)
T ss_dssp             CHHHHHHHHHHTTCCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCTTCEEEECC-----
T ss_pred             CHHHHHHHHHHhCCCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCCceEEEeCC-----
Confidence            355555555544  467789999999999999999865   8999999999999999863      367888765     


Q ss_pred             hhhhccCCCCceeeEEEccccccC-C--------hhHHHHHHHHhhcCCCeEEEEEecC
Q 037961           89 ELEQNVATQSSVDLVTIASALHWF-D--------LPQFYKQVKWVLKKPSGVIAAWTYT  138 (262)
Q Consensus        89 ~~~~~~~~~~~~D~V~~~~~~~~~-d--------~~~~l~~~~r~Lk~pgG~l~i~~~~  138 (262)
                       +.+++.+.++||+|+++..+++. .        ...+++++.++|| |||.+++.+..
T Consensus       263 -~~~~~~~~~~~D~Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~Lk-pgG~l~i~t~~  319 (354)
T 3tma_A          263 -ARHLPRFFPEVDRILANPPHGLRLGRKEGLFHLYWDFLRGALALLP-PGGRVALLTLR  319 (354)
T ss_dssp             -GGGGGGTCCCCSEEEECCCSCC----CHHHHHHHHHHHHHHHHTSC-TTCEEEEEESC
T ss_pred             -hhhCccccCCCCEEEECCCCcCccCCcccHHHHHHHHHHHHHHhcC-CCcEEEEEeCC
Confidence             56666566779999998877654 2        2568999999999 99999997654

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A

Probab=99.41  E-value=6.3e-13  Score=116.10  Aligned_cols=94  Identities=24%  Similarity=0.217  Sum_probs=75.4

Q ss_pred             CCCCeEEEEcCcccHhHHHHHhhCC-eEEEEcCCHHHHHHHhcC-------CCceEEeCCCCchhhhhhccCCCCceeeE
Q 037961           32 PKRNLAWDVGTRSGQAAASLAQIYQ-HVIATDTSPKQLKFAIKL-------PNIRYQLTPTMSITELEQNVATQSSVDLV  103 (262)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~D~V  103 (262)
                      .++.+|||+|||+|.++..+++.+. +|+|+|+|+ |++.|++.       .+++++.++      +++++++ ++||+|
T Consensus        49 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~l~~~v~~~~~d------~~~~~~~-~~~D~I  120 (348)
T 2y1w_A           49 FKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGK------VEEVSLP-EQVDII  120 (348)
T ss_dssp             TTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESC------TTTCCCS-SCEEEE
T ss_pred             CCcCEEEEcCCCccHHHHHHHhCCCCEEEEECCHH-HHHHHHHHHHHcCCCCcEEEEEcc------hhhCCCC-CceeEE
Confidence            3678999999999999999998865 999999996 88887642       468888765      4444444 679999


Q ss_pred             EEccccccC-C--hhHHHHHHHHhhcCCCeEEEE
Q 037961          104 TIASALHWF-D--LPQFYKQVKWVLKKPSGVIAA  134 (262)
Q Consensus       104 ~~~~~~~~~-d--~~~~l~~~~r~Lk~pgG~l~i  134 (262)
                      ++...++++ +  ....+.++.++|| |||.+++
T Consensus       121 vs~~~~~~~~~~~~~~~l~~~~~~Lk-pgG~li~  153 (348)
T 2y1w_A          121 ISEPMGYMLFNERMLESYLHAKKYLK-PSGNMFP  153 (348)
T ss_dssp             EECCCBTTBTTTSHHHHHHHGGGGEE-EEEEEES
T ss_pred             EEeCchhcCChHHHHHHHHHHHhhcC-CCeEEEE
Confidence            999776654 2  3468889999999 9999985

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E

Probab=99.41  E-value=1.1e-12  Score=108.88  Aligned_cols=97  Identities=14%  Similarity=0.178  Sum_probs=75.7

Q ss_pred             CCCeEEEEcCcccHhHHHHHhhC--CeEEEEcCCHHHHHHHhc--------------CCCceEEeCCCCchhhhhh-cc-
Q 037961           33 KRNLAWDVGTRSGQAAASLAQIY--QHVIATDTSPKQLKFAIK--------------LPNIRYQLTPTMSITELEQ-NV-   94 (262)
Q Consensus        33 ~~~~vlDvGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~--------------~~~~~~~~~~~~~~~~~~~-~~-   94 (262)
                      ++.+|||+|||+|.++..++..+  .+|+|+|+|+.+++.+++              ..++.++.+|      +.+ ++ 
T Consensus        49 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D------~~~~l~~  122 (246)
T 2vdv_E           49 KKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGN------AMKFLPN  122 (246)
T ss_dssp             CCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECC------TTSCGGG
T ss_pred             CCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEecc------HHHHHHH
Confidence            56789999999999999999875  479999999999988753              2578888876      222 33 


Q ss_pred             -CCCCceeeEEEccccccCCh---------hHHHHHHHHhhcCCCeEEEEEe
Q 037961           95 -ATQSSVDLVTIASALHWFDL---------PQFYKQVKWVLKKPSGVIAAWT  136 (262)
Q Consensus        95 -~~~~~~D~V~~~~~~~~~d~---------~~~l~~~~r~Lk~pgG~l~i~~  136 (262)
                       ++.+++|.|+....-.|...         ..+++++.++|+ |||.|++.+
T Consensus       123 ~~~~~~~d~v~~~~p~p~~k~~~~~~r~~~~~~l~~~~~~Lk-pgG~l~~~t  173 (246)
T 2vdv_E          123 FFEKGQLSKMFFCFPDPHFKQRKHKARIITNTLLSEYAYVLK-EGGVVYTIT  173 (246)
T ss_dssp             TSCTTCEEEEEEESCCCC------CSSCCCHHHHHHHHHHEE-EEEEEEEEE
T ss_pred             hccccccCEEEEECCCcccccchhHHhhccHHHHHHHHHHcC-CCCEEEEEe
Confidence             56789999996654444311         479999999999 999999854

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=99.41  E-value=1.1e-12  Score=113.14  Aligned_cols=100  Identities=13%  Similarity=0.148  Sum_probs=77.4

Q ss_pred             CCCCCeEEEEcCcccHhHHHHHhh--CCeEEEEcCCHHHHHHHhcC----------CCceEEeCCCCchhhhhh-ccCCC
Q 037961           31 TPKRNLAWDVGTRSGQAAASLAQI--YQHVIATDTSPKQLKFAIKL----------PNIRYQLTPTMSITELEQ-NVATQ   97 (262)
Q Consensus        31 ~~~~~~vlDvGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~----------~~~~~~~~~~~~~~~~~~-~~~~~   97 (262)
                      .+++.+|||+|||+|..+..++++  ..+|+++|+|+.+++.|+++          +++++..+|      +.+ ++..+
T Consensus       114 ~~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D------~~~~l~~~~  187 (321)
T 2pt6_A          114 SKEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIED------ASKFLENVT  187 (321)
T ss_dssp             SSSCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESC------HHHHHHHCC
T ss_pred             CCCCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEcc------HHHHHhhcC
Confidence            456689999999999999999986  57999999999999998752          356777765      222 22235


Q ss_pred             CceeeEEEccccccCC-----hhHHHHHHHHhhcCCCeEEEEEec
Q 037961           98 SSVDLVTIASALHWFD-----LPQFYKQVKWVLKKPSGVIAAWTY  137 (262)
Q Consensus        98 ~~~D~V~~~~~~~~~d-----~~~~l~~~~r~Lk~pgG~l~i~~~  137 (262)
                      ++||+|+++..-++-.     ...+++++.++|+ |||.+++...
T Consensus       188 ~~fDvIi~d~~~p~~~~~~l~~~~~l~~~~~~Lk-pgG~lv~~~~  231 (321)
T 2pt6_A          188 NTYDVIIVDSSDPIGPAETLFNQNFYEKIYNALK-PNGYCVAQCE  231 (321)
T ss_dssp             SCEEEEEEECCCSSSGGGGGSSHHHHHHHHHHEE-EEEEEEEEEC
T ss_pred             CCceEEEECCcCCCCcchhhhHHHHHHHHHHhcC-CCcEEEEEcC
Confidence            7899999876433321     1679999999999 9999999653

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=99.41  E-value=6.2e-13  Score=111.49  Aligned_cols=104  Identities=12%  Similarity=0.095  Sum_probs=77.0

Q ss_pred             CCCCeEEEEcCcccHhHHHHHhhC--CeEEEEcCCHHHHHHHhcC-C---------CceEEeCCCCch-hhhhhccCCCC
Q 037961           32 PKRNLAWDVGTRSGQAAASLAQIY--QHVIATDTSPKQLKFAIKL-P---------NIRYQLTPTMSI-TELEQNVATQS   98 (262)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~-~---------~~~~~~~~~~~~-~~~~~~~~~~~   98 (262)
                      .++.+|||+|||+|.++..++.++  .+|+|+|+++.+++.|+++ .         ++.++.+|.... ......+++++
T Consensus        35 ~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~  114 (260)
T 2ozv_A           35 DRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEAGLPDE  114 (260)
T ss_dssp             CSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHTTCCTT
T ss_pred             cCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhhccCCC
Confidence            366789999999999999999884  6899999999999999853 1         367777761111 00000124678


Q ss_pred             ceeeEEEccccccC-------------------ChhHHHHHHHHhhcCCCeEEEEEe
Q 037961           99 SVDLVTIASALHWF-------------------DLPQFYKQVKWVLKKPSGVIAAWT  136 (262)
Q Consensus        99 ~~D~V~~~~~~~~~-------------------d~~~~l~~~~r~Lk~pgG~l~i~~  136 (262)
                      +||+|+++..+++.                   +...+++.+.++|| |||.|++..
T Consensus       115 ~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~Lk-pgG~l~~~~  170 (260)
T 2ozv_A          115 HFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMV-SGGQLSLIS  170 (260)
T ss_dssp             CEEEEEECCCC---------------------CCHHHHHHHHHHHEE-EEEEEEEEE
T ss_pred             CcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcC-CCCEEEEEE
Confidence            99999998655442                   36779999999999 999999844

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=99.41  E-value=1.2e-12  Score=113.53  Aligned_cols=98  Identities=16%  Similarity=0.228  Sum_probs=77.3

Q ss_pred             CCCCCeEEEEcCcccHhHHHHHhh--CCeEEEEcCCHHHHHHHhcC----------CCceEEeCCCCchhhhhhc-c-CC
Q 037961           31 TPKRNLAWDVGTRSGQAAASLAQI--YQHVIATDTSPKQLKFAIKL----------PNIRYQLTPTMSITELEQN-V-AT   96 (262)
Q Consensus        31 ~~~~~~vlDvGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~----------~~~~~~~~~~~~~~~~~~~-~-~~   96 (262)
                      .++..+|||||||+|..++.++++  ..+|+++|+|+.|++.|+++          ++++++.+|      +... + .+
T Consensus       118 ~~~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D------~~~~l~~~~  191 (334)
T 1xj5_A          118 IPNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGD------GVAFLKNAA  191 (334)
T ss_dssp             SSCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESC------HHHHHHTSC
T ss_pred             CCCCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECC------HHHHHHhcc
Confidence            456789999999999999999986  46999999999999998852          467888776      3222 1 24


Q ss_pred             CCceeeEEEccccccC--C---hhHHHHHHHHhhcCCCeEEEEE
Q 037961           97 QSSVDLVTIASALHWF--D---LPQFYKQVKWVLKKPSGVIAAW  135 (262)
Q Consensus        97 ~~~~D~V~~~~~~~~~--d---~~~~l~~~~r~Lk~pgG~l~i~  135 (262)
                      +++||+|++...-++.  +   ...+++++.++|+ |||+|++.
T Consensus       192 ~~~fDlIi~d~~~p~~~~~~l~~~~~l~~~~~~Lk-pgG~lv~~  234 (334)
T 1xj5_A          192 EGSYDAVIVDSSDPIGPAKELFEKPFFQSVARALR-PGGVVCTQ  234 (334)
T ss_dssp             TTCEEEEEECCCCTTSGGGGGGSHHHHHHHHHHEE-EEEEEEEE
T ss_pred             CCCccEEEECCCCccCcchhhhHHHHHHHHHHhcC-CCcEEEEe
Confidence            6789999997653332  2   4679999999999 99999984

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=99.41  E-value=9.6e-13  Score=108.47  Aligned_cols=105  Identities=17%  Similarity=0.171  Sum_probs=80.4

Q ss_pred             HHHHHHHHhhC--CCCCeEEEEcCcccHhHHHHHhhC-CeEEEEcCCHHHHHHHhcC------CCceEEeCCCCchhhhh
Q 037961           21 KELFKLIASKT--PKRNLAWDVGTRSGQAAASLAQIY-QHVIATDTSPKQLKFAIKL------PNIRYQLTPTMSITELE   91 (262)
Q Consensus        21 ~~~~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~~~   91 (262)
                      +.+...+....  .++.+|||+|||+|.++..+++.+ .+|+++|+++.+++.|+++      .++.+..++      + 
T Consensus        77 ~~~~~~~~~~l~~~~~~~vLdiG~G~G~~~~~la~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d------~-  149 (235)
T 1jg1_A           77 PHMVAIMLEIANLKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVKNVHVILGD------G-  149 (235)
T ss_dssp             HHHHHHHHHHHTCCTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESC------G-
T ss_pred             HHHHHHHHHhcCCCCCCEEEEEeCCcCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEECC------c-
Confidence            34444444433  467789999999999999999886 8999999999999998852      467777765      2 


Q ss_pred             hccCCC-CceeeEEEccccccCChhHHHHHHHHhhcCCCeEEEEEecC
Q 037961           92 QNVATQ-SSVDLVTIASALHWFDLPQFYKQVKWVLKKPSGVIAAWTYT  138 (262)
Q Consensus        92 ~~~~~~-~~~D~V~~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~~  138 (262)
                      ..++++ .+||+|++..+++++.     .++.++|+ |||++++....
T Consensus       150 ~~~~~~~~~fD~Ii~~~~~~~~~-----~~~~~~L~-pgG~lvi~~~~  191 (235)
T 1jg1_A          150 SKGFPPKAPYDVIIVTAGAPKIP-----EPLIEQLK-IGGKLIIPVGS  191 (235)
T ss_dssp             GGCCGGGCCEEEEEECSBBSSCC-----HHHHHTEE-EEEEEEEEECS
T ss_pred             ccCCCCCCCccEEEECCcHHHHH-----HHHHHhcC-CCcEEEEEEec
Confidence            122233 3599999999998874     37899999 99999985443

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}

Probab=99.40  E-value=1.1e-12  Score=111.15  Aligned_cols=111  Identities=14%  Similarity=0.117  Sum_probs=82.5

Q ss_pred             HHHHHHHHhhC--CCCCeEEEEcCcccHhHHHHHhhCC-eEEEEcC-CHHHHHHHhcCC----------------CceEE
Q 037961           21 KELFKLIASKT--PKRNLAWDVGTRSGQAAASLAQIYQ-HVIATDT-SPKQLKFAIKLP----------------NIRYQ   80 (262)
Q Consensus        21 ~~~~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~~-~v~~vD~-s~~~~~~a~~~~----------------~~~~~   80 (262)
                      ..+.+++....  .++.+|||+|||+|.++..++..+. +|+++|+ |+.+++.++++.                ++.+.
T Consensus        65 ~~l~~~l~~~~~~~~~~~vLDlG~G~G~~~~~~a~~~~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~  144 (281)
T 3bzb_A           65 RALADTLCWQPELIAGKTVCELGAGAGLVSIVAFLAGADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVV  144 (281)
T ss_dssp             HHHHHHHHHCGGGTTTCEEEETTCTTSHHHHHHHHTTCSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEE
T ss_pred             HHHHHHHHhcchhcCCCeEEEecccccHHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEE
Confidence            34566666554  4677999999999999999998876 8999999 899999887532                34454


Q ss_pred             eCCCCchhh-hhhcc--CCCCceeeEEEccccccC-ChhHHHHHHHHhhcC--C--CeEEEE
Q 037961           81 LTPTMSITE-LEQNV--ATQSSVDLVTIASALHWF-DLPQFYKQVKWVLKK--P--SGVIAA  134 (262)
Q Consensus        81 ~~~~~~~~~-~~~~~--~~~~~~D~V~~~~~~~~~-d~~~~l~~~~r~Lk~--p--gG~l~i  134 (262)
                      ..+   .++ ...+.  +++++||+|+++.++++. +...+++.+.++|+.  |  ||++++
T Consensus       145 ~~~---~~~~~~~~~~~~~~~~fD~Ii~~dvl~~~~~~~~ll~~l~~~Lk~~~p~~gG~l~v  203 (281)
T 3bzb_A          145 PYR---WGDSPDSLQRCTGLQRFQVVLLADLLSFHQAHDALLRSVKMLLALPANDPTAVALV  203 (281)
T ss_dssp             ECC---TTSCTHHHHHHHSCSSBSEEEEESCCSCGGGHHHHHHHHHHHBCCTTTCTTCEEEE
T ss_pred             Eec---CCCccHHHHhhccCCCCCEEEEeCcccChHHHHHHHHHHHHHhcccCCCCCCEEEE
Confidence            333   011 11111  135789999999999888 888999999999981  4  998776

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=99.40  E-value=2.6e-12  Score=108.48  Aligned_cols=109  Identities=22%  Similarity=0.206  Sum_probs=84.2

Q ss_pred             CCChHHHHHHHHhhC--CCCCeEEEEcCcccHhHHHHHhh---CCeEEEEcCCHHHHHHHhcC-------CCceEEeCCC
Q 037961           17 PNYPKELFKLIASKT--PKRNLAWDVGTRSGQAAASLAQI---YQHVIATDTSPKQLKFAIKL-------PNIRYQLTPT   84 (262)
Q Consensus        17 p~yp~~~~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~   84 (262)
                      +.||... ..+....  .++.+|||+|||+|.++..+++.   +.+|+++|+|+.+++.|+++       .++.+..+| 
T Consensus        95 ~~~~~~~-~~i~~~~~~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d-  172 (277)
T 1o54_A           95 IVYPKDS-SFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRD-  172 (277)
T ss_dssp             CCCHHHH-HHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCC-
T ss_pred             ccCHHHH-HHHHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECC-
Confidence            4566554 3444433  46789999999999999999987   57999999999999998853       356777655 


Q ss_pred             CchhhhhhccCCCCceeeEEEccccccCChhHHHHHHHHhhcCCCeEEEEEecC
Q 037961           85 MSITELEQNVATQSSVDLVTIASALHWFDLPQFYKQVKWVLKKPSGVIAAWTYT  138 (262)
Q Consensus        85 ~~~~~~~~~~~~~~~~D~V~~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~~  138 (262)
                           +.+. +++++||+|+++    .-++..+++++.++|+ |||.|++....
T Consensus       173 -----~~~~-~~~~~~D~V~~~----~~~~~~~l~~~~~~L~-pgG~l~~~~~~  215 (277)
T 1o54_A          173 -----ISEG-FDEKDVDALFLD----VPDPWNYIDKCWEALK-GGGRFATVCPT  215 (277)
T ss_dssp             -----GGGC-CSCCSEEEEEEC----CSCGGGTHHHHHHHEE-EEEEEEEEESS
T ss_pred             -----HHHc-ccCCccCEEEEC----CcCHHHHHHHHHHHcC-CCCEEEEEeCC
Confidence                 3333 456789999984    2377789999999999 99999996654

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51

Probab=99.40  E-value=9.9e-13  Score=114.05  Aligned_cols=115  Identities=17%  Similarity=0.190  Sum_probs=83.4

Q ss_pred             CCCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhcC------C--CceEEeCCCCchhhhhhcc----CCCCc
Q 037961           32 PKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKL------P--NIRYQLTPTMSITELEQNV----ATQSS   99 (262)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~------~--~~~~~~~~~~~~~~~~~~~----~~~~~   99 (262)
                      +++.+|||+|||+|.++..++..+++|+++|+|+.+++.|+++      .  ++.++++|      +.++.    ...++
T Consensus       152 ~~~~~VLDlgcGtG~~sl~la~~ga~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D------~~~~l~~~~~~~~~  225 (332)
T 2igt_A          152 DRPLKVLNLFGYTGVASLVAAAAGAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICED------AMKFIQREERRGST  225 (332)
T ss_dssp             SSCCEEEEETCTTCHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSC------HHHHHHHHHHHTCC
T ss_pred             CCCCcEEEcccccCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECc------HHHHHHHHHhcCCC
Confidence            4667999999999999999999988999999999999999863      2  37888776      22221    01468


Q ss_pred             eeeEEEccc----------cccC-ChhHHHHHHHHhhcCCCeEEEEEe-cCCCcccHHHHHhhccc
Q 037961          100 VDLVTIASA----------LHWF-DLPQFYKQVKWVLKKPSGVIAAWT-YTMPEINESVGAVFKPF  153 (262)
Q Consensus       100 ~D~V~~~~~----------~~~~-d~~~~l~~~~r~Lk~pgG~l~i~~-~~~~~~~~~~~~~~~~~  153 (262)
                      ||+|+++..          +++. +...+++++.++|+ |||.|++.. +....-...+.+++.+.
T Consensus       226 fD~Ii~dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~Lk-pgG~lli~~~~~~~~~~~~~~~~l~~a  290 (332)
T 2igt_A          226 YDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILS-PKALGLVLTAYSIRASFYSMHELMRET  290 (332)
T ss_dssp             BSEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBC-TTCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             ceEEEECCccccCCchHHHHHHHHHHHHHHHHHHHhcC-cCcEEEEEECCCCCCCHHHHHHHHHHH
Confidence            999999543          2334 56789999999999 999977644 33222124455555543

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}

Probab=99.40  E-value=1.8e-12  Score=109.45  Aligned_cols=101  Identities=18%  Similarity=0.144  Sum_probs=82.0

Q ss_pred             HHhhCCCCCeEEEEcCcccHhHHHHHhhCC--eEEEEcCCHHHHHHHhcC------CCceEEeCCCCchhhhhhccCCCC
Q 037961           27 IASKTPKRNLAWDVGTRSGQAAASLAQIYQ--HVIATDTSPKQLKFAIKL------PNIRYQLTPTMSITELEQNVATQS   98 (262)
Q Consensus        27 l~~~~~~~~~vlDvGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~~~~~~~~~~   98 (262)
                      +.....++.+|||+|||+|.++..+++.+.  +|+|+|+|+.+++.|+++      .++.+..+|      +.+.+. .+
T Consensus       113 ~~~~~~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~d------~~~~~~-~~  185 (272)
T 3a27_A          113 MAFISNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKLNNVIPILAD------NRDVEL-KD  185 (272)
T ss_dssp             HHTSCCTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTCSSEEEEESC------GGGCCC-TT
T ss_pred             HHHhcCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEECC------hHHcCc-cC
Confidence            344467888999999999999999999854  999999999999998852      467777765      444422 56


Q ss_pred             ceeeEEEccccccCChhHHHHHHHHhhcCCCeEEEEEecC
Q 037961           99 SVDLVTIASALHWFDLPQFYKQVKWVLKKPSGVIAAWTYT  138 (262)
Q Consensus        99 ~~D~V~~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~~  138 (262)
                      +||+|+++...   +...++.++.++|+ |||.+++.+..
T Consensus       186 ~~D~Vi~d~p~---~~~~~l~~~~~~Lk-pgG~l~~s~~~  221 (272)
T 3a27_A          186 VADRVIMGYVH---KTHKFLDKTFEFLK-DRGVIHYHETV  221 (272)
T ss_dssp             CEEEEEECCCS---SGGGGHHHHHHHEE-EEEEEEEEEEE
T ss_pred             CceEEEECCcc---cHHHHHHHHHHHcC-CCCEEEEEEcC
Confidence            89999998764   77889999999999 99999985543

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=99.39  E-value=1.2e-12  Score=113.67  Aligned_cols=112  Identities=16%  Similarity=0.192  Sum_probs=80.0

Q ss_pred             CCChHHHHHHHHh-hCCCCCeEEEEcCcccHhHHHHHhh-C--CeEEEEcCCHHHHHHHhcC-----------------C
Q 037961           17 PNYPKELFKLIAS-KTPKRNLAWDVGTRSGQAAASLAQI-Y--QHVIATDTSPKQLKFAIKL-----------------P   75 (262)
Q Consensus        17 p~yp~~~~~~l~~-~~~~~~~vlDvGcG~G~~~~~l~~~-~--~~v~~vD~s~~~~~~a~~~-----------------~   75 (262)
                      ..||......+.. ...++.+|||+|||+|.++..++.. +  .+|+++|+++.+++.|+++                 .
T Consensus        88 ~~~~~~~~~~l~~l~~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~  167 (336)
T 2b25_A           88 ITFPKDINMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPD  167 (336)
T ss_dssp             CCCHHHHHHHHHHHTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCC
T ss_pred             ccCHHHHHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCC
Confidence            3555533222222 2357889999999999999999987 4  7899999999999998752                 4


Q ss_pred             CceEEeCCCCchhhhhhc--cCCCCceeeEEEccccccCChhHHHHHHHHhhcCCCeEEEEEecCC
Q 037961           76 NIRYQLTPTMSITELEQN--VATQSSVDLVTIASALHWFDLPQFYKQVKWVLKKPSGVIAAWTYTM  139 (262)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~--~~~~~~~D~V~~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~~~  139 (262)
                      ++.+..+|      +.+.  ++++++||+|+++..    ++..+++++.++|+ |||.|++.....
T Consensus       168 ~v~~~~~d------~~~~~~~~~~~~fD~V~~~~~----~~~~~l~~~~~~Lk-pgG~lv~~~~~~  222 (336)
T 2b25_A          168 NVDFIHKD------ISGATEDIKSLTFDAVALDML----NPHVTLPVFYPHLK-HGGVCAVYVVNI  222 (336)
T ss_dssp             CEEEEESC------TTCCC-------EEEEEECSS----STTTTHHHHGGGEE-EEEEEEEEESSH
T ss_pred             ceEEEECC------hHHcccccCCCCeeEEEECCC----CHHHHHHHHHHhcC-CCcEEEEEeCCH
Confidence            67787766      3332  345678999998543    45568999999999 999999866543

>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A

Probab=99.39  E-value=1.6e-13  Score=108.04  Aligned_cols=84  Identities=13%  Similarity=0.111  Sum_probs=71.3

Q ss_pred             CCCCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhcC--CCceEEeCCCCchhhhhhccC---CCCceeeEEE
Q 037961           31 TPKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKL--PNIRYQLTPTMSITELEQNVA---TQSSVDLVTI  105 (262)
Q Consensus        31 ~~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~---~~~~~D~V~~  105 (262)
                      ++++.+|||+|||+              +++|+|+.|++.|++.  .++++..++      ++++++   ++++||+|++
T Consensus        10 ~~~g~~vL~~~~g~--------------v~vD~s~~ml~~a~~~~~~~~~~~~~d------~~~~~~~~~~~~~fD~V~~   69 (176)
T 2ld4_A           10 ISAGQFVAVVWDKS--------------SPVEALKGLVDKLQALTGNEGRVSVEN------IKQLLQSAHKESSFDIILS   69 (176)
T ss_dssp             CCTTSEEEEEECTT--------------SCHHHHHHHHHHHHHHTTTTSEEEEEE------GGGGGGGCCCSSCEEEEEE
T ss_pred             CCCCCEEEEecCCc--------------eeeeCCHHHHHHHHHhcccCcEEEEec------hhcCccccCCCCCEeEEEE
Confidence            46889999999996              2499999999999864  357777654      555555   7889999999


Q ss_pred             ccccccC--ChhHHHHHHHHhhcCCCeEEEEE
Q 037961          106 ASALHWF--DLPQFYKQVKWVLKKPSGVIAAW  135 (262)
Q Consensus       106 ~~~~~~~--d~~~~l~~~~r~Lk~pgG~l~i~  135 (262)
                      +.++||+  |+..++++++|+|| |||.|++.
T Consensus        70 ~~~l~~~~~~~~~~l~~~~r~Lk-pgG~l~~~  100 (176)
T 2ld4_A           70 GLVPGSTTLHSAEILAEIARILR-PGGCLFLK  100 (176)
T ss_dssp             CCSTTCCCCCCHHHHHHHHHHEE-EEEEEEEE
T ss_pred             CChhhhcccCHHHHHHHHHHHCC-CCEEEEEE
Confidence            9999998  88889999999999 99999983

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=99.39  E-value=1.2e-12  Score=106.97  Aligned_cols=98  Identities=21%  Similarity=0.310  Sum_probs=75.1

Q ss_pred             CCCeEEEEcCcccHhHHHHHhh---CCeEEEEcCCHHHHHHHhcC-------CCceEEeCCCCchhhhhhcc--CCCCce
Q 037961           33 KRNLAWDVGTRSGQAAASLAQI---YQHVIATDTSPKQLKFAIKL-------PNIRYQLTPTMSITELEQNV--ATQSSV  100 (262)
Q Consensus        33 ~~~~vlDvGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~~~~~~--~~~~~~  100 (262)
                      ++.+|||+|||+|..+..++..   +.+|+++|+++.+++.|++.       .++++..++..  .......  ...++|
T Consensus        64 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~--~~~~~~~~~~~~~~f  141 (225)
T 3tr6_A           64 QAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAK--DTLAELIHAGQAWQY  141 (225)
T ss_dssp             TCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHH--HHHHHHHTTTCTTCE
T ss_pred             CCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHH--HHHHHhhhccCCCCc
Confidence            5678999999999999999986   67999999999999998853       35888887610  0111111  011789


Q ss_pred             eeEEEccccccC-ChhHHHHHHHHhhcCCCeEEEEEe
Q 037961          101 DLVTIASALHWF-DLPQFYKQVKWVLKKPSGVIAAWT  136 (262)
Q Consensus       101 D~V~~~~~~~~~-d~~~~l~~~~r~Lk~pgG~l~i~~  136 (262)
                      |+|++...   . +...+++++.++|| |||+|++-.
T Consensus       142 D~v~~~~~---~~~~~~~l~~~~~~L~-pgG~lv~~~  174 (225)
T 3tr6_A          142 DLIYIDAD---KANTDLYYEESLKLLR-EGGLIAVDN  174 (225)
T ss_dssp             EEEEECSC---GGGHHHHHHHHHHHEE-EEEEEEEEC
T ss_pred             cEEEECCC---HHHHHHHHHHHHHhcC-CCcEEEEeC
Confidence            99996543   3 57779999999999 999999843

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=99.38  E-value=2.1e-12  Score=109.55  Aligned_cols=100  Identities=13%  Similarity=0.154  Sum_probs=78.1

Q ss_pred             CCCCCeEEEEcCcccHhHHHHHhh--CCeEEEEcCCHHHHHHHhcC----------CCceEEeCCCCchhhhhh-ccCCC
Q 037961           31 TPKRNLAWDVGTRSGQAAASLAQI--YQHVIATDTSPKQLKFAIKL----------PNIRYQLTPTMSITELEQ-NVATQ   97 (262)
Q Consensus        31 ~~~~~~vlDvGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~----------~~~~~~~~~~~~~~~~~~-~~~~~   97 (262)
                      .+++.+|||+|||+|..++.+++.  ..+|+++|+++.+++.|++.          +++++..+|      +.. ++..+
T Consensus        76 ~~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D------~~~~l~~~~  149 (283)
T 2i7c_A           76 SKEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIED------ASKFLENVT  149 (283)
T ss_dssp             SSSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESC------HHHHHHHCC
T ss_pred             CCCCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECC------hHHHHHhCC
Confidence            356789999999999999999886  46999999999999998852          456777765      222 22236


Q ss_pred             CceeeEEEccccccCCh-----hHHHHHHHHhhcCCCeEEEEEec
Q 037961           98 SSVDLVTIASALHWFDL-----PQFYKQVKWVLKKPSGVIAAWTY  137 (262)
Q Consensus        98 ~~~D~V~~~~~~~~~d~-----~~~l~~~~r~Lk~pgG~l~i~~~  137 (262)
                      ++||+|++....++...     ..+++++.++|+ |||++++...
T Consensus       150 ~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~-pgG~lv~~~~  193 (283)
T 2i7c_A          150 NTYDVIIVDSSDPIGPAETLFNQNFYEKIYNALK-PNGYCVAQCE  193 (283)
T ss_dssp             SCEEEEEEECCCTTTGGGGGSSHHHHHHHHHHEE-EEEEEEEECC
T ss_pred             CCceEEEEcCCCCCCcchhhhHHHHHHHHHHhcC-CCcEEEEECC
Confidence            78999999765554311     579999999999 9999998643

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A

Probab=99.38  E-value=2.2e-12  Score=108.18  Aligned_cols=92  Identities=17%  Similarity=0.082  Sum_probs=74.5

Q ss_pred             CCCCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhcC----------CCceEEeCCCCchhhhhhccCCCCce
Q 037961           31 TPKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKL----------PNIRYQLTPTMSITELEQNVATQSSV  100 (262)
Q Consensus        31 ~~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (262)
                      .+.+.+|||+|||+|.+++.+++++.+|+++|+++.|++.|++.          +++++..+|      +....   ++|
T Consensus        70 ~~~~~~VL~iG~G~G~~~~~ll~~~~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D------~~~~~---~~f  140 (262)
T 2cmg_A           70 KKELKEVLIVDGFDLELAHQLFKYDTHIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQL------LDLDI---KKY  140 (262)
T ss_dssp             SSCCCEEEEESSCCHHHHHHHTTSSCEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSG------GGSCC---CCE
T ss_pred             CCCCCEEEEEeCCcCHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEech------HHHHH---hhC
Confidence            35668999999999999999887767899999999999999863          245666543      44432   789


Q ss_pred             eeEEEccccccCChhHHHHHHHHhhcCCCeEEEEEe
Q 037961          101 DLVTIASALHWFDLPQFYKQVKWVLKKPSGVIAAWT  136 (262)
Q Consensus       101 D~V~~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~  136 (262)
                      |+|++..    .|+..+++++.++|+ |||++++..
T Consensus       141 D~Ii~d~----~dp~~~~~~~~~~L~-pgG~lv~~~  171 (262)
T 2cmg_A          141 DLIFCLQ----EPDIHRIDGLKRMLK-EDGVFISVA  171 (262)
T ss_dssp             EEEEESS----CCCHHHHHHHHTTEE-EEEEEEEEE
T ss_pred             CEEEECC----CChHHHHHHHHHhcC-CCcEEEEEc
Confidence            9999873    377779999999999 999999864

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=99.38  E-value=1.3e-12  Score=106.63  Aligned_cols=99  Identities=17%  Similarity=0.197  Sum_probs=75.3

Q ss_pred             CCCCeEEEEcCcccHhHHHHHhh---CCeEEEEcCCHHHHHHHhcC-------CCceEEeCCCCchhhhhhccCC-CCce
Q 037961           32 PKRNLAWDVGTRSGQAAASLAQI---YQHVIATDTSPKQLKFAIKL-------PNIRYQLTPTMSITELEQNVAT-QSSV  100 (262)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~~~~~~~~-~~~~  100 (262)
                      .++.+|||+|||+|..+..+++.   +.+|+++|+++.+++.|+++       .++++..++..  .....++.. .++|
T Consensus        57 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~--~~~~~~~~~~~~~f  134 (223)
T 3duw_A           57 QGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLAL--DSLQQIENEKYEPF  134 (223)
T ss_dssp             HTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHH--HHHHHHHHTTCCCC
T ss_pred             hCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHH--HHHHHHHhcCCCCc
Confidence            36678999999999999999987   67999999999999998752       35888887710  001111111 2679


Q ss_pred             eeEEEccccccCChhHHHHHHHHhhcCCCeEEEEE
Q 037961          101 DLVTIASALHWFDLPQFYKQVKWVLKKPSGVIAAW  135 (262)
Q Consensus       101 D~V~~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~  135 (262)
                      |+|++....+  +...+++++.++|+ |||+|++-
T Consensus       135 D~v~~d~~~~--~~~~~l~~~~~~L~-pgG~lv~~  166 (223)
T 3duw_A          135 DFIFIDADKQ--NNPAYFEWALKLSR-PGTVIIGD  166 (223)
T ss_dssp             SEEEECSCGG--GHHHHHHHHHHTCC-TTCEEEEE
T ss_pred             CEEEEcCCcH--HHHHHHHHHHHhcC-CCcEEEEe
Confidence            9999875522  55679999999999 99988873

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=99.38  E-value=2.2e-12  Score=110.55  Aligned_cols=99  Identities=14%  Similarity=0.177  Sum_probs=76.0

Q ss_pred             CCCCCeEEEEcCcccHhHHHHHhhC--CeEEEEcCCHHHHHHHhcC----------CCceEEeCCCCchhhhhh-ccCCC
Q 037961           31 TPKRNLAWDVGTRSGQAAASLAQIY--QHVIATDTSPKQLKFAIKL----------PNIRYQLTPTMSITELEQ-NVATQ   97 (262)
Q Consensus        31 ~~~~~~vlDvGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~----------~~~~~~~~~~~~~~~~~~-~~~~~   97 (262)
                      .++..+|||||||+|.+++.++++.  .+|+++|+++.+++.|+++          ++++++.+|      +.. ++..+
T Consensus        93 ~~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~D------a~~~l~~~~  166 (304)
T 2o07_A           93 HPNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGD------GFEFMKQNQ  166 (304)
T ss_dssp             SSSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESC------HHHHHHTCS
T ss_pred             CCCCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECc------HHHHHhhCC
Confidence            3566899999999999999999874  6999999999999998752          467777765      322 23346


Q ss_pred             CceeeEEEccccccC-----ChhHHHHHHHHhhcCCCeEEEEEe
Q 037961           98 SSVDLVTIASALHWF-----DLPQFYKQVKWVLKKPSGVIAAWT  136 (262)
Q Consensus        98 ~~~D~V~~~~~~~~~-----d~~~~l~~~~r~Lk~pgG~l~i~~  136 (262)
                      ++||+|++....++.     ....+++++.++|+ |||+|++..
T Consensus       167 ~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~Lk-pgG~lv~~~  209 (304)
T 2o07_A          167 DAFDVIITDSSDPMGPAESLFKESYYQLMKTALK-EDGVLCCQG  209 (304)
T ss_dssp             SCEEEEEEECC-----------CHHHHHHHHHEE-EEEEEEEEE
T ss_pred             CCceEEEECCCCCCCcchhhhHHHHHHHHHhccC-CCeEEEEec
Confidence            789999997765543     23568999999999 999999854

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=99.37  E-value=3.3e-12  Score=108.27  Aligned_cols=98  Identities=15%  Similarity=0.157  Sum_probs=76.0

Q ss_pred             CCCCCeEEEEcCcccHhHHHHHhh-CCeEEEEcCCHHHHHHHhcC----------------CCceEEeCCCCchhhhhh-
Q 037961           31 TPKRNLAWDVGTRSGQAAASLAQI-YQHVIATDTSPKQLKFAIKL----------------PNIRYQLTPTMSITELEQ-   92 (262)
Q Consensus        31 ~~~~~~vlDvGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~----------------~~~~~~~~~~~~~~~~~~-   92 (262)
                      .+++.+|||+|||+|.++..++++ ..+|+++|+++.+++.|+++                +++++..+|      +.. 
T Consensus        73 ~~~~~~VLdiG~G~G~~~~~l~~~~~~~v~~vDid~~~i~~ar~~~~~~~~l~~~~~~~~~~~v~~~~~D------~~~~  146 (281)
T 1mjf_A           73 HPKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGD------GFEF  146 (281)
T ss_dssp             SSCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESC------HHHH
T ss_pred             CCCCCeEEEEcCCcCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHhhccccccccccCCCCcEEEEECc------hHHH
Confidence            456788999999999999999987 45899999999999998742                346666665      322 


Q ss_pred             ccCCCCceeeEEEccccccCC-----hhHHHHHHHHhhcCCCeEEEEEe
Q 037961           93 NVATQSSVDLVTIASALHWFD-----LPQFYKQVKWVLKKPSGVIAAWT  136 (262)
Q Consensus        93 ~~~~~~~~D~V~~~~~~~~~d-----~~~~l~~~~r~Lk~pgG~l~i~~  136 (262)
                      +.. +++||+|++....++..     ...+++++.++|+ |||++++..
T Consensus       147 l~~-~~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~-pgG~lv~~~  193 (281)
T 1mjf_A          147 IKN-NRGFDVIIADSTDPVGPAKVLFSEEFYRYVYDALN-NPGIYVTQA  193 (281)
T ss_dssp             HHH-CCCEEEEEEECCCCC-----TTSHHHHHHHHHHEE-EEEEEEEEE
T ss_pred             hcc-cCCeeEEEECCCCCCCcchhhhHHHHHHHHHHhcC-CCcEEEEEc
Confidence            222 57899999987655432     3668999999999 999999854

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}

Probab=99.37  E-value=1.6e-12  Score=113.41  Aligned_cols=95  Identities=13%  Similarity=0.098  Sum_probs=73.6

Q ss_pred             CCCCeEEEEcCcccHhHHHHHhhC--CeEEEEcCCHHHHHHHhc-----CCCceEEeCCCCchhhhhhccCCCCceeeEE
Q 037961           32 PKRNLAWDVGTRSGQAAASLAQIY--QHVIATDTSPKQLKFAIK-----LPNIRYQLTPTMSITELEQNVATQSSVDLVT  104 (262)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~  104 (262)
                      ++..+|||||||+|..+..+++.+  .+++++|++ .++..++.     ..++++..+|      +. .+++  +||+|+
T Consensus       183 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~~~~~~~~~~~~v~~~~~d------~~-~~~p--~~D~v~  252 (348)
T 3lst_A          183 PATGTVADVGGGRGGFLLTVLREHPGLQGVLLDRA-EVVARHRLDAPDVAGRWKVVEGD------FL-REVP--HADVHV  252 (348)
T ss_dssp             CSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEECH-HHHTTCCCCCGGGTTSEEEEECC------TT-TCCC--CCSEEE
T ss_pred             cCCceEEEECCccCHHHHHHHHHCCCCEEEEecCH-HHhhcccccccCCCCCeEEEecC------CC-CCCC--CCcEEE
Confidence            467899999999999999999864  478999994 55542211     1468888776      32 2233  899999


Q ss_pred             EccccccC-Ch--hHHHHHHHHhhcCCCeEEEEEec
Q 037961          105 IASALHWF-DL--PQFYKQVKWVLKKPSGVIAAWTY  137 (262)
Q Consensus       105 ~~~~~~~~-d~--~~~l~~~~r~Lk~pgG~l~i~~~  137 (262)
                      +..++|++ |.  .+++++++++|| |||+|++...
T Consensus       253 ~~~vlh~~~d~~~~~~L~~~~~~Lk-pgG~l~i~e~  287 (348)
T 3lst_A          253 LKRILHNWGDEDSVRILTNCRRVMP-AHGRVLVIDA  287 (348)
T ss_dssp             EESCGGGSCHHHHHHHHHHHHHTCC-TTCEEEEEEC
T ss_pred             EehhccCCCHHHHHHHHHHHHHhcC-CCCEEEEEEe
Confidence            99999988 55  479999999999 9999998554

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=99.37  E-value=1.8e-12  Score=107.80  Aligned_cols=101  Identities=14%  Similarity=0.210  Sum_probs=77.7

Q ss_pred             HHHHHhhCCCCCeEEEEcCcccHhHHHHHhh---CCeEEEEcCCHHHHHHHhcC-------CCceEEeCCCCchhhhhh-
Q 037961           24 FKLIASKTPKRNLAWDVGTRSGQAAASLAQI---YQHVIATDTSPKQLKFAIKL-------PNIRYQLTPTMSITELEQ-   92 (262)
Q Consensus        24 ~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~~~~-   92 (262)
                      +..+... .+..+|||+|||+|..+..++..   +.+|+++|+|+.+++.|+++       .++++..++      +.+ 
T Consensus        71 l~~l~~~-~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gd------a~~~  143 (247)
T 1sui_A           71 LSMLLKL-INAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGP------ALPV  143 (247)
T ss_dssp             HHHHHHH-TTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESC------HHHH
T ss_pred             HHHHHHh-hCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECC------HHHH
Confidence            3444433 35578999999999999999986   67999999999999999853       357888876      221 


Q ss_pred             cc-C-----CCCceeeEEEccccccCChhHHHHHHHHhhcCCCeEEEE
Q 037961           93 NV-A-----TQSSVDLVTIASALHWFDLPQFYKQVKWVLKKPSGVIAA  134 (262)
Q Consensus        93 ~~-~-----~~~~~D~V~~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i  134 (262)
                      ++ +     ++++||+|++...  .-+...+++++.++|| |||+|++
T Consensus       144 l~~l~~~~~~~~~fD~V~~d~~--~~~~~~~l~~~~~~Lk-pGG~lv~  188 (247)
T 1sui_A          144 LDEMIKDEKNHGSYDFIFVDAD--KDNYLNYHKRLIDLVK-VGGVIGY  188 (247)
T ss_dssp             HHHHHHSGGGTTCBSEEEECSC--STTHHHHHHHHHHHBC-TTCCEEE
T ss_pred             HHHHHhccCCCCCEEEEEEcCc--hHHHHHHHHHHHHhCC-CCeEEEE
Confidence            11 1     2578999998743  1267889999999999 9999987

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*

Probab=99.37  E-value=1.5e-12  Score=113.96  Aligned_cols=95  Identities=18%  Similarity=0.186  Sum_probs=79.6

Q ss_pred             CCCCeEEEEcCcccHhHHHHHhhC--CeEEEEcCCHHHHHHHhcCCCceEEeCCCCchhhhhhccCCCCceeeEEEcccc
Q 037961           32 PKRNLAWDVGTRSGQAAASLAQIY--QHVIATDTSPKQLKFAIKLPNIRYQLTPTMSITELEQNVATQSSVDLVTIASAL  109 (262)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~  109 (262)
                      ++..+|||||||+|.++..+++.+  .+++++|+ +.+++.+++.+++++..+|      +.+ +++  +||+|++..++
T Consensus       192 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~d------~~~-~~~--~~D~v~~~~vl  261 (358)
T 1zg3_A          192 EGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQ-PQVVGNLTGNENLNFVGGD------MFK-SIP--SADAVLLKWVL  261 (358)
T ss_dssp             HTCSEEEEETCTTSHHHHHHHHHCTTSEEEEEEC-HHHHSSCCCCSSEEEEECC------TTT-CCC--CCSEEEEESCG
T ss_pred             cCCCEEEEECCCcCHHHHHHHHHCCCCeEEEecc-HHHHhhcccCCCcEEEeCc------cCC-CCC--CceEEEEcccc
Confidence            356789999999999999999874  47999999 7999988877788888876      333 334  49999999999


Q ss_pred             ccC-Chh--HHHHHHHHhhcCC---CeEEEEEec
Q 037961          110 HWF-DLP--QFYKQVKWVLKKP---SGVIAAWTY  137 (262)
Q Consensus       110 ~~~-d~~--~~l~~~~r~Lk~p---gG~l~i~~~  137 (262)
                      |++ |.+  ++++++.++|+ |   ||+|++...
T Consensus       262 h~~~d~~~~~~l~~~~~~L~-p~~~gG~l~i~e~  294 (358)
T 1zg3_A          262 HDWNDEQSLKILKNSKEAIS-HKGKDGKVIIIDI  294 (358)
T ss_dssp             GGSCHHHHHHHHHHHHHHTG-GGGGGCEEEEEEC
T ss_pred             cCCCHHHHHHHHHHHHHhCC-CCCCCcEEEEEEe
Confidence            988 666  89999999999 9   999998543

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}

Probab=99.36  E-value=1.6e-12  Score=113.39  Aligned_cols=96  Identities=19%  Similarity=0.204  Sum_probs=78.1

Q ss_pred             CCeEEEEcCcccHhHHHHHhh--CCeEEEEcCCHHHHHHHhcC-------CCceEEeCCCCchhhhhhcc-CCCCceeeE
Q 037961           34 RNLAWDVGTRSGQAAASLAQI--YQHVIATDTSPKQLKFAIKL-------PNIRYQLTPTMSITELEQNV-ATQSSVDLV  103 (262)
Q Consensus        34 ~~~vlDvGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~~~~~~-~~~~~~D~V  103 (262)
                      ..+|||||||+|.++..+++.  ..+++++|+ +.+++.+++.       .++++..+|      +.+.+ +.+++||+|
T Consensus       180 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d------~~~~~~~~~~~~D~v  252 (352)
T 3mcz_A          180 ARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDL-PTTRDAARKTIHAHDLGGRVEFFEKN------LLDARNFEGGAADVV  252 (352)
T ss_dssp             CCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCGGGEEEEECC------TTCGGGGTTCCEEEE
T ss_pred             CCEEEEeCCCcCHHHHHHHHhCCCCeEEEEEC-HHHHHHHHHHHHhcCCCCceEEEeCC------cccCcccCCCCccEE
Confidence            789999999999999999987  468999999 8899888752       358888876      22222 134569999


Q ss_pred             EEccccccCC-h--hHHHHHHHHhhcCCCeEEEEEec
Q 037961          104 TIASALHWFD-L--PQFYKQVKWVLKKPSGVIAAWTY  137 (262)
Q Consensus       104 ~~~~~~~~~d-~--~~~l~~~~r~Lk~pgG~l~i~~~  137 (262)
                      ++..++|+++ .  .++++++.++|+ |||+|++...
T Consensus       253 ~~~~vlh~~~~~~~~~~l~~~~~~L~-pgG~l~i~e~  288 (352)
T 3mcz_A          253 MLNDCLHYFDAREAREVIGHAAGLVK-PGGALLILTM  288 (352)
T ss_dssp             EEESCGGGSCHHHHHHHHHHHHHTEE-EEEEEEEEEE
T ss_pred             EEecccccCCHHHHHHHHHHHHHHcC-CCCEEEEEEe
Confidence            9999999884 3  579999999999 9999998554

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*

Probab=99.36  E-value=2.9e-12  Score=112.10  Aligned_cols=97  Identities=15%  Similarity=0.138  Sum_probs=77.9

Q ss_pred             CCCCeEEEEcCcccHhHHHHHhhC--CeEEEEcCCHHHHHHHhcC-------CCceEEeCCCCchhhhhhccCCCCceee
Q 037961           32 PKRNLAWDVGTRSGQAAASLAQIY--QHVIATDTSPKQLKFAIKL-------PNIRYQLTPTMSITELEQNVATQSSVDL  102 (262)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~D~  102 (262)
                      ++..+|||+|||+|..+..+++.+  .+++++|+ +.+++.++++       .++++..+|      +.+ +++. .||+
T Consensus       182 ~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d------~~~-~~~~-~~D~  252 (360)
T 1tw3_A          182 TNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGD------FFE-PLPR-KADA  252 (360)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECC------TTS-CCSS-CEEE
T ss_pred             ccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecC-HHHHHHHHHHHHhcCCCCceEEEeCC------CCC-CCCC-CccE
Confidence            466899999999999999999874  57899999 9999988752       368888876      222 2233 4999


Q ss_pred             EEEccccccC-Ch--hHHHHHHHHhhcCCCeEEEEEecC
Q 037961          103 VTIASALHWF-DL--PQFYKQVKWVLKKPSGVIAAWTYT  138 (262)
Q Consensus       103 V~~~~~~~~~-d~--~~~l~~~~r~Lk~pgG~l~i~~~~  138 (262)
                      |++..++|++ +.  .++++++.++|+ |||++++....
T Consensus       253 v~~~~vl~~~~~~~~~~~l~~~~~~L~-pgG~l~i~e~~  290 (360)
T 1tw3_A          253 IILSFVLLNWPDHDAVRILTRCAEALE-PGGRILIHERD  290 (360)
T ss_dssp             EEEESCGGGSCHHHHHHHHHHHHHTEE-EEEEEEEEECC
T ss_pred             EEEcccccCCCHHHHHHHHHHHHHhcC-CCcEEEEEEEe
Confidence            9999999988 44  369999999999 99999986543

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}

Probab=99.36  E-value=4.5e-12  Score=112.22  Aligned_cols=110  Identities=12%  Similarity=0.034  Sum_probs=80.6

Q ss_pred             HHHHHhhCCCCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhcC-----CCceEEeCCCCchhhhhhc-cCCC
Q 037961           24 FKLIASKTPKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKL-----PNIRYQLTPTMSITELEQN-VATQ   97 (262)
Q Consensus        24 ~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~-----~~~~~~~~~~~~~~~~~~~-~~~~   97 (262)
                      ..++....+++.+|||+|||+|.++..++..+++|+++|+|+.+++.|+++     ....+.++|      +.++ +...
T Consensus       205 r~~l~~~~~~g~~VLDlg~GtG~~sl~~a~~ga~V~avDis~~al~~a~~n~~~ng~~~~~~~~D------~~~~l~~~~  278 (393)
T 4dmg_A          205 RRLFEAMVRPGERVLDVYSYVGGFALRAARKGAYALAVDKDLEALGVLDQAALRLGLRVDIRHGE------ALPTLRGLE  278 (393)
T ss_dssp             HHHHHTTCCTTCEEEEESCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCCCEEEESC------HHHHHHTCC
T ss_pred             HHHHHHHhcCCCeEEEcccchhHHHHHHHHcCCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEcc------HHHHHHHhc
Confidence            334555555689999999999999999999998999999999999999863     123455554      3332 1113


Q ss_pred             CceeeEEEcccccc---------C-ChhHHHHHHHHhhcCCCeEEEEEecCCC
Q 037961           98 SSVDLVTIASALHW---------F-DLPQFYKQVKWVLKKPSGVIAAWTYTMP  140 (262)
Q Consensus        98 ~~~D~V~~~~~~~~---------~-d~~~~l~~~~r~Lk~pgG~l~i~~~~~~  140 (262)
                      +.||+|+++.....         . +...++..+.++|+ |||.|++.+++..
T Consensus       279 ~~fD~Ii~dpP~f~~~~~~~~~~~~~~~~ll~~a~~~Lk-pGG~Lv~~s~s~~  330 (393)
T 4dmg_A          279 GPFHHVLLDPPTLVKRPEELPAMKRHLVDLVREALRLLA-EEGFLWLSSCSYH  330 (393)
T ss_dssp             CCEEEEEECCCCCCSSGGGHHHHHHHHHHHHHHHHHTEE-EEEEEEEEECCTT
T ss_pred             CCCCEEEECCCcCCCCHHHHHHHHHHHHHHHHHHHHhcC-CCCEEEEEECCCC
Confidence            44999998755311         2 34568899999999 9999997666543

>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*

Probab=99.36  E-value=2.6e-13  Score=116.36  Aligned_cols=97  Identities=10%  Similarity=-0.012  Sum_probs=71.4

Q ss_pred             CCCCCeEEEEcCcccHhHHHHHhhCCeEEEEcC----CHHHHHHHh--cC--CCceEEeC-CCCchhhhhhccCCCCcee
Q 037961           31 TPKRNLAWDVGTRSGQAAASLAQIYQHVIATDT----SPKQLKFAI--KL--PNIRYQLT-PTMSITELEQNVATQSSVD  101 (262)
Q Consensus        31 ~~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~----s~~~~~~a~--~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~D  101 (262)
                      .+++.+|||||||+|.++..++++ .+|+|+|+    ++.+++.+.  ..  +++.++++ |      +..+  +.++||
T Consensus        80 ~~~g~~VLDlGcG~G~~s~~la~~-~~V~gvD~~~~~~~~~~~~~~~~~~~~~~v~~~~~~D------~~~l--~~~~fD  150 (305)
T 2p41_A           80 VTPEGKVVDLGCGRGGWSYYCGGL-KNVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSGVD------VFFI--PPERCD  150 (305)
T ss_dssp             SCCCEEEEEETCTTSHHHHHHHTS-TTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCC------TTTS--CCCCCS
T ss_pred             CCCCCEEEEEcCCCCHHHHHHHhc-CCEEEEeccccCchhHHHHHHhhhcCCCCeEEEeccc------cccC--CcCCCC
Confidence            357789999999999999999998 68999999    665543221  11  45677665 4      3333  356899


Q ss_pred             eEEEcccc---ccC-Chh---HHHHHHHHhhcCCCeEEEEEec
Q 037961          102 LVTIASAL---HWF-DLP---QFYKQVKWVLKKPSGVIAAWTY  137 (262)
Q Consensus       102 ~V~~~~~~---~~~-d~~---~~l~~~~r~Lk~pgG~l~i~~~  137 (262)
                      +|+|..++   ||. |..   .++.++.++|| |||.|++-.+
T Consensus       151 ~V~sd~~~~~g~~~~d~~~~l~~L~~~~~~Lk-pGG~~v~kv~  192 (305)
T 2p41_A          151 TLLCDIGESSPNPTVEAGRTLRVLNLVENWLS-NNTQFCVKVL  192 (305)
T ss_dssp             EEEECCCCCCSSHHHHHHHHHHHHHHHHHHCC-TTCEEEEEES
T ss_pred             EEEECCccccCcchhhHHHHHHHHHHHHHHhC-CCCEEEEEeC
Confidence            99998775   344 444   47899999999 9999988433

>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}

Probab=99.36  E-value=1.7e-12  Score=113.93  Aligned_cols=93  Identities=20%  Similarity=0.174  Sum_probs=73.4

Q ss_pred             CCCeEEEEcCcccHhHHHHHhhCC-eEEEEcCCHHHHHHHhcC-------CCceEEeCCCCchhhhhhccCCCCceeeEE
Q 037961           33 KRNLAWDVGTRSGQAAASLAQIYQ-HVIATDTSPKQLKFAIKL-------PNIRYQLTPTMSITELEQNVATQSSVDLVT  104 (262)
Q Consensus        33 ~~~~vlDvGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~  104 (262)
                      ++.+|||||||+|.++...++.|+ +|+|||.|+ |++.|++.       ..|.++.++      ++++.++ ++||+|+
T Consensus        83 ~~k~VLDvG~GtGiLs~~Aa~aGA~~V~ave~s~-~~~~a~~~~~~n~~~~~i~~i~~~------~~~~~lp-e~~Dviv  154 (376)
T 4hc4_A           83 RGKTVLDVGAGTGILSIFCAQAGARRVYAVEASA-IWQQAREVVRFNGLEDRVHVLPGP------VETVELP-EQVDAIV  154 (376)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-THHHHHHHHHHTTCTTTEEEEESC------TTTCCCS-SCEEEEE
T ss_pred             CCCEEEEeCCCccHHHHHHHHhCCCEEEEEeChH-HHHHHHHHHHHcCCCceEEEEeee------eeeecCC-ccccEEE
Confidence            678999999999999999998886 799999995 88888752       468888765      4555544 6799999


Q ss_pred             Ec---cccccC-ChhHHHHHHHHhhcCCCeEEEE
Q 037961          105 IA---SALHWF-DLPQFYKQVKWVLKKPSGVIAA  134 (262)
Q Consensus       105 ~~---~~~~~~-d~~~~l~~~~r~Lk~pgG~l~i  134 (262)
                      +.   ..+.+- ..+.++....|+|| |||.++-
T Consensus       155 sE~~~~~l~~e~~l~~~l~a~~r~Lk-p~G~~iP  187 (376)
T 4hc4_A          155 SEWMGYGLLHESMLSSVLHARTKWLK-EGGLLLP  187 (376)
T ss_dssp             CCCCBTTBTTTCSHHHHHHHHHHHEE-EEEEEES
T ss_pred             eecccccccccchhhhHHHHHHhhCC-CCceECC
Confidence            84   344444 56678888899999 9999873

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=99.36  E-value=2.9e-12  Score=110.22  Aligned_cols=99  Identities=13%  Similarity=0.156  Sum_probs=73.7

Q ss_pred             CCCCCeEEEEcCcccHhHHHHHhh--CCeEEEEcCCHHHHHHHhcC----------CCceEEeCCCCchhhhhh-ccCCC
Q 037961           31 TPKRNLAWDVGTRSGQAAASLAQI--YQHVIATDTSPKQLKFAIKL----------PNIRYQLTPTMSITELEQ-NVATQ   97 (262)
Q Consensus        31 ~~~~~~vlDvGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~----------~~~~~~~~~~~~~~~~~~-~~~~~   97 (262)
                      .++..+|||||||+|..++.+++.  ..+|+++|+|+.+++.|+++          +++++..+|      +.. ++..+
T Consensus       106 ~~~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D------~~~~l~~~~  179 (314)
T 2b2c_A          106 HPDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGD------GFEFLKNHK  179 (314)
T ss_dssp             SSSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSC------HHHHHHHCT
T ss_pred             CCCCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEECh------HHHHHHhcC
Confidence            456689999999999999999986  47999999999999999852          346666665      322 22246


Q ss_pred             CceeeEEEccccccCCh-----hHHHHHHHHhhcCCCeEEEEEe
Q 037961           98 SSVDLVTIASALHWFDL-----PQFYKQVKWVLKKPSGVIAAWT  136 (262)
Q Consensus        98 ~~~D~V~~~~~~~~~d~-----~~~l~~~~r~Lk~pgG~l~i~~  136 (262)
                      ++||+|++...-++-..     ..+++++.++|+ |||+|++-.
T Consensus       180 ~~fD~Ii~d~~~~~~~~~~l~t~~~l~~~~~~Lk-pgG~lv~~~  222 (314)
T 2b2c_A          180 NEFDVIITDSSDPVGPAESLFGQSYYELLRDALK-EDGILSSQG  222 (314)
T ss_dssp             TCEEEEEECCC-------------HHHHHHHHEE-EEEEEEEEC
T ss_pred             CCceEEEEcCCCCCCcchhhhHHHHHHHHHhhcC-CCeEEEEEC
Confidence            78999998765443321     578999999999 999999854

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=99.35  E-value=3.8e-13  Score=111.60  Aligned_cols=93  Identities=20%  Similarity=0.290  Sum_probs=74.1

Q ss_pred             CCCeEEEEcCcccHhHHHHHhh---CCeEEEEcCCHHHHHHHhcC-------CCceEEeCCCCchhhhhh-ccC-----C
Q 037961           33 KRNLAWDVGTRSGQAAASLAQI---YQHVIATDTSPKQLKFAIKL-------PNIRYQLTPTMSITELEQ-NVA-----T   96 (262)
Q Consensus        33 ~~~~vlDvGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~~~~-~~~-----~   96 (262)
                      +..+|||+|||+|..+..++..   +.+|+++|+++.+++.|+++       .+++++.++      +.+ ++.     .
T Consensus        60 ~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd------a~~~l~~~~~~~~  133 (242)
T 3r3h_A           60 RAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGP------ALDTLHSLLNEGG  133 (242)
T ss_dssp             TCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESC------HHHHHHHHHHHHC
T ss_pred             CcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcC------HHHHHHHHhhccC
Confidence            5678999999999999999984   57999999999999877652       478888876      222 111     1


Q ss_pred             CCceeeEEEccccccCChhHHHHHHHHhhcCCCeEEEE
Q 037961           97 QSSVDLVTIASALHWFDLPQFYKQVKWVLKKPSGVIAA  134 (262)
Q Consensus        97 ~~~~D~V~~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i  134 (262)
                      +++||+|++...  .-+...+++++.++|| |||+|++
T Consensus       134 ~~~fD~V~~d~~--~~~~~~~l~~~~~~Lk-pGG~lv~  168 (242)
T 3r3h_A          134 EHQFDFIFIDAD--KTNYLNYYELALKLVT-PKGLIAI  168 (242)
T ss_dssp             SSCEEEEEEESC--GGGHHHHHHHHHHHEE-EEEEEEE
T ss_pred             CCCEeEEEEcCC--hHHhHHHHHHHHHhcC-CCeEEEE
Confidence            478999998754  2256678999999999 9999998

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=99.35  E-value=2.9e-12  Score=104.86  Aligned_cols=100  Identities=21%  Similarity=0.376  Sum_probs=76.1

Q ss_pred             CCCCeEEEEcCcccHhHHHHHhh---CCeEEEEcCCHHHHHHHhcC-------CCceEEeCCCCchhhhhhccCC--CCc
Q 037961           32 PKRNLAWDVGTRSGQAAASLAQI---YQHVIATDTSPKQLKFAIKL-------PNIRYQLTPTMSITELEQNVAT--QSS   99 (262)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~~~~~~~~--~~~   99 (262)
                      .++.+|||+|||+|..+..+++.   +.+|+++|+++.+++.|++.       .++++..++..  .....++..  .++
T Consensus        68 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~--~~~~~~~~~~~~~~  145 (229)
T 2avd_A           68 IQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPAL--ETLDELLAAGEAGT  145 (229)
T ss_dssp             TTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHH--HHHHHHHHTTCTTC
T ss_pred             cCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHH--HHHHHHHhcCCCCC
Confidence            46678999999999999999985   57999999999999998853       46888887610  011112111  168


Q ss_pred             eeeEEEccccccCChhHHHHHHHHhhcCCCeEEEEEe
Q 037961          100 VDLVTIASALHWFDLPQFYKQVKWVLKKPSGVIAAWT  136 (262)
Q Consensus       100 ~D~V~~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~  136 (262)
                      ||+|++...  .-+...+++++.++|+ |||++++.+
T Consensus       146 ~D~v~~d~~--~~~~~~~l~~~~~~L~-pgG~lv~~~  179 (229)
T 2avd_A          146 FDVAVVDAD--KENCSAYYERCLQLLR-PGGILAVLR  179 (229)
T ss_dssp             EEEEEECSC--STTHHHHHHHHHHHEE-EEEEEEEEC
T ss_pred             ccEEEECCC--HHHHHHHHHHHHHHcC-CCeEEEEEC
Confidence            999998654  2256789999999999 999999843

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32

Probab=99.34  E-value=2.3e-12  Score=103.36  Aligned_cols=85  Identities=14%  Similarity=0.091  Sum_probs=66.0

Q ss_pred             CCCCeEEEEcCcccHhHHHHHhhCC-eEEEEcCCHHHHHHHhcC-CCceEEeCCCCchhhhhhccCCCCceeeEEEcccc
Q 037961           32 PKRNLAWDVGTRSGQAAASLAQIYQ-HVIATDTSPKQLKFAIKL-PNIRYQLTPTMSITELEQNVATQSSVDLVTIASAL  109 (262)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~  109 (262)
                      .++.+|||+|||+|.++..++..+. +|+|+|+|+.|++.++++ .++++..+|      +.+++   ++||+|+++..+
T Consensus        50 ~~~~~vlD~gcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~d------~~~~~---~~~D~v~~~~p~  120 (200)
T 1ne2_A           50 IGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCGGVNFMVAD------VSEIS---GKYDTWIMNPPF  120 (200)
T ss_dssp             SBTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCTTSEEEECC------GGGCC---CCEEEEEECCCC
T ss_pred             CCCCEEEEEeCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHhcCCCEEEECc------HHHCC---CCeeEEEECCCc
Confidence            3678999999999999999998865 699999999999999864 378888775      44442   689999999999


Q ss_pred             ccCCh---hHHHHHHHHhh
Q 037961          110 HWFDL---PQFYKQVKWVL  125 (262)
Q Consensus       110 ~~~d~---~~~l~~~~r~L  125 (262)
                      ||...   ..+++++.+++
T Consensus       121 ~~~~~~~~~~~l~~~~~~~  139 (200)
T 1ne2_A          121 GSVVKHSDRAFIDKAFETS  139 (200)
T ss_dssp             -------CHHHHHHHHHHE
T ss_pred             hhccCchhHHHHHHHHHhc
Confidence            99832   35777777776

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=99.34  E-value=4.6e-12  Score=104.72  Aligned_cols=108  Identities=15%  Similarity=0.168  Sum_probs=78.0

Q ss_pred             HHHHHHhhCCCCCeEEEEcCcccHhHHHHHhh---CCeEEEEcCCHHHHHHHhcC-------CCceEEeCCCCch-hhhh
Q 037961           23 LFKLIASKTPKRNLAWDVGTRSGQAAASLAQI---YQHVIATDTSPKQLKFAIKL-------PNIRYQLTPTMSI-TELE   91 (262)
Q Consensus        23 ~~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~-~~~~   91 (262)
                      ++..+... .+..+|||+|||+|..+..+++.   +.+|+++|+++.+++.|+++       .++++..++.... ....
T Consensus        61 ~l~~l~~~-~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~  139 (237)
T 3c3y_A           61 LMSFVLKL-VNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLL  139 (237)
T ss_dssp             HHHHHHHH-TTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHH
T ss_pred             HHHHHHHh-hCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHH
Confidence            34444433 45678999999999999999986   67999999999999999752       3578888761100 0010


Q ss_pred             hccCCCCceeeEEEccccccC-ChhHHHHHHHHhhcCCCeEEEEE
Q 037961           92 QNVATQSSVDLVTIASALHWF-DLPQFYKQVKWVLKKPSGVIAAW  135 (262)
Q Consensus        92 ~~~~~~~~~D~V~~~~~~~~~-d~~~~l~~~~r~Lk~pgG~l~i~  135 (262)
                      ....++++||+|++..   +. +...+++++.++|+ |||++++-
T Consensus       140 ~~~~~~~~fD~I~~d~---~~~~~~~~l~~~~~~L~-pGG~lv~d  180 (237)
T 3c3y_A          140 QGQESEGSYDFGFVDA---DKPNYIKYHERLMKLVK-VGGIVAYD  180 (237)
T ss_dssp             HSTTCTTCEEEEEECS---CGGGHHHHHHHHHHHEE-EEEEEEEE
T ss_pred             hccCCCCCcCEEEECC---chHHHHHHHHHHHHhcC-CCeEEEEe
Confidence            0011257899999863   33 56779999999999 99999883

>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24

Probab=99.34  E-value=4.1e-12  Score=107.91  Aligned_cols=104  Identities=13%  Similarity=0.183  Sum_probs=78.7

Q ss_pred             HHHHHHHHhhC--CCCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhcC-------CCceEEeCCCCchhhhh
Q 037961           21 KELFKLIASKT--PKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKL-------PNIRYQLTPTMSITELE   91 (262)
Q Consensus        21 ~~~~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~~~   91 (262)
                      +.+.+.+....  .++.+|||+|||+|.++..+++.+.+|+|+|+|+.|++.+++.       ++++++.+|      +.
T Consensus        14 ~~i~~~i~~~~~~~~~~~VLDiG~G~G~lt~~L~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D------~~   87 (285)
T 1zq9_A           14 PLIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEKAKKVVACELDPRLVAELHKRVQGTPVASKLQVLVGD------VL   87 (285)
T ss_dssp             HHHHHHHHHHTCCCTTCEEEEECCTTSTTHHHHHHHSSEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESC------TT
T ss_pred             HHHHHHHHHhcCCCCCCEEEEEcCcccHHHHHHHhhCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcc------ee
Confidence            55666776665  3678999999999999999999999999999999999988752       357788765      44


Q ss_pred             hccCCCCceeeEEEccccccCChh--HHH--------------HHH--HHhhcCCCeEEE
Q 037961           92 QNVATQSSVDLVTIASALHWFDLP--QFY--------------KQV--KWVLKKPSGVIA  133 (262)
Q Consensus        92 ~~~~~~~~~D~V~~~~~~~~~d~~--~~l--------------~~~--~r~Lk~pgG~l~  133 (262)
                      ..+++  +||+|+++..++|..+.  .++              +|+  +++|+ |||.++
T Consensus        88 ~~~~~--~fD~vv~nlpy~~~~~~~~~~l~~~~~~~~~~~m~qkEva~r~vlk-PGg~~y  144 (285)
T 1zq9_A           88 KTDLP--FFDTCVANLPYQISSPFVFKLLLHRPFFRCAILMFQREFALRLVAK-PGDKLY  144 (285)
T ss_dssp             TSCCC--CCSEEEEECCGGGHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHHCC-TTCTTC
T ss_pred             cccch--hhcEEEEecCcccchHHHHHHHhcCcchhhhhhhhhHHHHHHHhcC-CCCccc
Confidence            44333  79999999888876221  122              333  36899 999873

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=99.33  E-value=4.7e-12  Score=104.28  Aligned_cols=99  Identities=23%  Similarity=0.350  Sum_probs=76.1

Q ss_pred             CCCeEEEEcCcccHhHHHHHhh---CCeEEEEcCCHHHHHHHhcC-------CCceEEeCCCCchhhhhhccCCC--Cce
Q 037961           33 KRNLAWDVGTRSGQAAASLAQI---YQHVIATDTSPKQLKFAIKL-------PNIRYQLTPTMSITELEQNVATQ--SSV  100 (262)
Q Consensus        33 ~~~~vlDvGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~~~~~~~~~--~~~  100 (262)
                      +..+|||+|||+|..+..++..   +.+|+++|+|+.+++.|++.       .++++..++..  .....++..+  ++|
T Consensus        72 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~--~~l~~l~~~~~~~~f  149 (232)
T 3cbg_A           72 GAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPAL--ATLEQLTQGKPLPEF  149 (232)
T ss_dssp             TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHH--HHHHHHHTSSSCCCE
T ss_pred             CCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHH--HHHHHHHhcCCCCCc
Confidence            5678999999999999999986   46999999999999998853       35788877610  1122333333  789


Q ss_pred             eeEEEccccccCChhHHHHHHHHhhcCCCeEEEEEe
Q 037961          101 DLVTIASALHWFDLPQFYKQVKWVLKKPSGVIAAWT  136 (262)
Q Consensus       101 D~V~~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~  136 (262)
                      |+|++....  -+...+++++.++|+ |||+|++-+
T Consensus       150 D~V~~d~~~--~~~~~~l~~~~~~Lk-pgG~lv~~~  182 (232)
T 3cbg_A          150 DLIFIDADK--RNYPRYYEIGLNLLR-RGGLMVIDN  182 (232)
T ss_dssp             EEEEECSCG--GGHHHHHHHHHHTEE-EEEEEEEEC
T ss_pred             CEEEECCCH--HHHHHHHHHHHHHcC-CCeEEEEeC
Confidence            999976541  256779999999999 999999843

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54

Probab=99.33  E-value=9.9e-13  Score=109.56  Aligned_cols=106  Identities=11%  Similarity=0.034  Sum_probs=73.9

Q ss_pred             HHHHHHhhCC----CCCeEEEEcCcccHhHHHHHhh--CCeEEEEcCCHHHHHHHhcC-------CCceEEeCCCCchhh
Q 037961           23 LFKLIASKTP----KRNLAWDVGTRSGQAAASLAQI--YQHVIATDTSPKQLKFAIKL-------PNIRYQLTPTMSITE   89 (262)
Q Consensus        23 ~~~~l~~~~~----~~~~vlDvGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~   89 (262)
                      ++..+....+    ++.+|||+|||+|.++..++..  +.+|+|+|+|+.|++.|+++       .++.+..+|      
T Consensus        51 ~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d------  124 (254)
T 2h00_A           51 WVEDLIGHQDSDKSTLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVP------  124 (254)
T ss_dssp             HHHHHHCCCCGGGCCCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECC------
T ss_pred             HHHHHHhhccccCCCCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcc------
Confidence            3444444443    4678999999999999998875  68999999999999998853       237888776      


Q ss_pred             hhhc---cCC---CCceeeEEEccccccCC----------------hhHHHHHHHHhhcCCCeEEEEE
Q 037961           90 LEQN---VAT---QSSVDLVTIASALHWFD----------------LPQFYKQVKWVLKKPSGVIAAW  135 (262)
Q Consensus        90 ~~~~---~~~---~~~~D~V~~~~~~~~~d----------------~~~~l~~~~r~Lk~pgG~l~i~  135 (262)
                      +.+.   +++   +++||+|+++..+++..                ...++.++.++|| |||.+.++
T Consensus       125 ~~~~~~~~~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Lk-pgG~l~~~  191 (254)
T 2h00_A          125 QKTLLMDALKEESEIIYDFCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMA-EGGELEFV  191 (254)
T ss_dssp             TTCSSTTTSTTCCSCCBSEEEECCCCC-------------------------CTTTTHH-HHTHHHHH
T ss_pred             hhhhhhhhhhcccCCcccEEEECCCCccCcchhcccccccccccCCHHHHhhhHHHHEe-cCCEEEEE
Confidence            2210   223   36899999997776542                1235678999999 99988763

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=99.33  E-value=4e-12  Score=104.99  Aligned_cols=100  Identities=22%  Similarity=0.304  Sum_probs=75.7

Q ss_pred             CCCCeEEEEcCcccHhHHHHHhh---CCeEEEEcCCHHHHHHHhcC-------CCceEEeCCCCchhhhhhc--------
Q 037961           32 PKRNLAWDVGTRSGQAAASLAQI---YQHVIATDTSPKQLKFAIKL-------PNIRYQLTPTMSITELEQN--------   93 (262)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~~~~~--------   93 (262)
                      .++.+|||+|||+|..+..+++.   +.+|+++|+++.+++.|+++       .++.+..++...  ....+        
T Consensus        59 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~--~~~~~~~~~~~~~  136 (239)
T 2hnk_A           59 SGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALE--TLQVLIDSKSAPS  136 (239)
T ss_dssp             HTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHH--HHHHHHHCSSCCG
T ss_pred             hCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHH--HHHHHHhhccccc
Confidence            36678999999999999999987   57999999999999998863       237888776100  01111        


Q ss_pred             ---cCCC--CceeeEEEccccccCChhHHHHHHHHhhcCCCeEEEEEe
Q 037961           94 ---VATQ--SSVDLVTIASALHWFDLPQFYKQVKWVLKKPSGVIAAWT  136 (262)
Q Consensus        94 ---~~~~--~~~D~V~~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~  136 (262)
                         .+++  ++||+|++.....  +...+++++.++|+ |||.|++-.
T Consensus       137 ~~~~f~~~~~~fD~I~~~~~~~--~~~~~l~~~~~~L~-pgG~lv~~~  181 (239)
T 2hnk_A          137 WASDFAFGPSSIDLFFLDADKE--NYPNYYPLILKLLK-PGGLLIADN  181 (239)
T ss_dssp             GGTTTCCSTTCEEEEEECSCGG--GHHHHHHHHHHHEE-EEEEEEEEC
T ss_pred             ccccccCCCCCcCEEEEeCCHH--HHHHHHHHHHHHcC-CCeEEEEEc
Confidence               1233  7899999874321  56689999999999 999999843

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*

Probab=99.32  E-value=4.7e-12  Score=111.98  Aligned_cols=124  Identities=9%  Similarity=0.042  Sum_probs=84.3

Q ss_pred             HHHhhCCCCCeEEEEcCcccHhHHHHHhhCC-eEEEEcCCHHHHHHHhcC------C--CceEEeCCCCchhhhhhccCC
Q 037961           26 LIASKTPKRNLAWDVGTRSGQAAASLAQIYQ-HVIATDTSPKQLKFAIKL------P--NIRYQLTPTMSITELEQNVAT   96 (262)
Q Consensus        26 ~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~------~--~~~~~~~~~~~~~~~~~~~~~   96 (262)
                      ++.....++.+|||+|||+|.++..++..++ +|+++|+|+.+++.|+++      .  +++++.+|...  ....+.-.
T Consensus       205 ~~~~~~~~~~~VLDl~cGtG~~sl~la~~ga~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~--~l~~~~~~  282 (385)
T 2b78_A          205 ELINGSAAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFD--YFKYARRH  282 (385)
T ss_dssp             HHHHTTTBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHH--HHHHHHHT
T ss_pred             HHHHHhcCCCeEEEEeeccCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHH--HHHHHHHh
Confidence            3333325678999999999999999998765 899999999999998852      2  68888877110  01111112


Q ss_pred             CCceeeEEEccccc-----cC-C----hhHHHHHHHHhhcCCCeEEEEEecCCCcccHHHHHhhcc
Q 037961           97 QSSVDLVTIASALH-----WF-D----LPQFYKQVKWVLKKPSGVIAAWTYTMPEINESVGAVFKP  152 (262)
Q Consensus        97 ~~~~D~V~~~~~~~-----~~-d----~~~~l~~~~r~Lk~pgG~l~i~~~~~~~~~~~~~~~~~~  152 (262)
                      ..+||+|++.....     .. +    ...++.++.++|+ |||.|++.+.......+.+.+++..
T Consensus       283 ~~~fD~Ii~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~-pgG~l~~~~~~~~~~~~~~~~~i~~  347 (385)
T 2b78_A          283 HLTYDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILS-ENGLIIASTNAANMTVSQFKKQIEK  347 (385)
T ss_dssp             TCCEEEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEE-EEEEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCCccEEEECCCCCCCChhhHHHHHHHHHHHHHHHHHhcC-CCcEEEEEeCCCcCCHHHHHHHHHH
Confidence            45899999865442     22 3    3346778899999 9999998665543222344444433

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}

Probab=99.32  E-value=3e-12  Score=116.22  Aligned_cols=102  Identities=24%  Similarity=0.214  Sum_probs=77.6

Q ss_pred             HHHHHhhC--CCCCeEEEEcCcccHhHHHHHhhC-CeEEEEcCCHHHHHHHhcC-------CCceEEeCCCCchhhhhhc
Q 037961           24 FKLIASKT--PKRNLAWDVGTRSGQAAASLAQIY-QHVIATDTSPKQLKFAIKL-------PNIRYQLTPTMSITELEQN   93 (262)
Q Consensus        24 ~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~~~~~   93 (262)
                      .+.+....  .++.+|||+|||+|.++..+++.+ .+|+|+|+|+ |++.|++.       .+++++.++      ++++
T Consensus       147 ~~~il~~l~~~~~~~VLDiGcGtG~la~~la~~~~~~V~gvD~s~-~l~~A~~~~~~~gl~~~v~~~~~d------~~~~  219 (480)
T 3b3j_A          147 QRAILQNHTDFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGK------VEEV  219 (480)
T ss_dssp             HHHHHHTGGGTTTCEEEEESCSTTHHHHHHHHTTCSEEEEEECHH-HHHHHHHHHHHTTCTTTEEEEESC------TTTC
T ss_pred             HHHHHHhhhhcCCCEEEEecCcccHHHHHHHHcCCCEEEEEEcHH-HHHHHHHHHHHcCCCCcEEEEECc------hhhC
Confidence            33444433  366899999999999999998875 4999999998 98888752       568888775      4444


Q ss_pred             cCCCCceeeEEEccccccC-C--hhHHHHHHHHhhcCCCeEEEE
Q 037961           94 VATQSSVDLVTIASALHWF-D--LPQFYKQVKWVLKKPSGVIAA  134 (262)
Q Consensus        94 ~~~~~~~D~V~~~~~~~~~-d--~~~~l~~~~r~Lk~pgG~l~i  134 (262)
                      +++ ++||+|+++..+++. +  ....+.++.++|| |||.+++
T Consensus       220 ~~~-~~fD~Ivs~~~~~~~~~e~~~~~l~~~~~~Lk-pgG~li~  261 (480)
T 3b3j_A          220 SLP-EQVDIIISEPMGYMLFNERMLESYLHAKKYLK-PSGNMFP  261 (480)
T ss_dssp             CCS-SCEEEEECCCCHHHHTCHHHHHHHHHGGGGEE-EEEEEES
T ss_pred             ccC-CCeEEEEEeCchHhcCcHHHHHHHHHHHHhcC-CCCEEEE
Confidence            433 589999998775544 3  3457778899999 9999985

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*

Probab=99.31  E-value=5.9e-12  Score=106.87  Aligned_cols=106  Identities=21%  Similarity=0.183  Sum_probs=79.7

Q ss_pred             HHHHHHHHhhCC--CCCeEEEEcCcccHhHHHHHhh-CCeEEEEcCCHHHHHHHhcC------C-CceEEeCCCCchhhh
Q 037961           21 KELFKLIASKTP--KRNLAWDVGTRSGQAAASLAQI-YQHVIATDTSPKQLKFAIKL------P-NIRYQLTPTMSITEL   90 (262)
Q Consensus        21 ~~~~~~l~~~~~--~~~~vlDvGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~------~-~~~~~~~~~~~~~~~   90 (262)
                      +.+++.+....+  ++.+|||+|||+|..+..++.. +.+|+|+|+|+.+++.|+++      . ++.+..+|.      
T Consensus       109 e~lv~~~l~~~~~~~~~~vLDlG~GsG~~~~~la~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~------  182 (284)
T 1nv8_A          109 EELVELALELIRKYGIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEF------  182 (284)
T ss_dssp             HHHHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESST------
T ss_pred             HHHHHHHHHHhcccCCCEEEEEeCchhHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcc------
Confidence            456666665543  5678999999999999999988 78999999999999999853      2 388888772      


Q ss_pred             hhccCCCCce---eeEEEcccccc----------C----------ChhHHHHHHH-HhhcCCCeEEEEE
Q 037961           91 EQNVATQSSV---DLVTIASALHW----------F----------DLPQFYKQVK-WVLKKPSGVIAAW  135 (262)
Q Consensus        91 ~~~~~~~~~~---D~V~~~~~~~~----------~----------d~~~~l~~~~-r~Lk~pgG~l~i~  135 (262)
                      .+. ++ ++|   |+|+++.....          .          |...+++++. +.|+ |||.|++-
T Consensus       183 ~~~-~~-~~f~~~D~IvsnPPyi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l~-pgG~l~~e  248 (284)
T 1nv8_A          183 LEP-FK-EKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDT-SGKIVLME  248 (284)
T ss_dssp             TGG-GG-GGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCC-TTCEEEEE
T ss_pred             hhh-cc-cccCCCCEEEEcCCCCCcccccChhhccCcHHHhcCCCcHHHHHHHHHHhcCC-CCCEEEEE
Confidence            111 11 468   99999843321          1          1236899999 9999 99999983

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=99.30  E-value=1.8e-11  Score=105.44  Aligned_cols=100  Identities=17%  Similarity=0.144  Sum_probs=76.5

Q ss_pred             CCCCeEEEEcCcccHhHHHHHhh---CCeEEEEcCCHHHHHHHhcC------CCceEEeCCCCchhhhhhccCCCCceee
Q 037961           32 PKRNLAWDVGTRSGQAAASLAQI---YQHVIATDTSPKQLKFAIKL------PNIRYQLTPTMSITELEQNVATQSSVDL  102 (262)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~D~  102 (262)
                      .++.+|||+|||+|..+..+++.   ..+|+|+|+|+.+++.++++      .++.+..+|      +..++..+++||+
T Consensus       117 ~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D------~~~~~~~~~~fD~  190 (315)
T 1ixk_A          117 KPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSS------SLHIGELNVEFDK  190 (315)
T ss_dssp             CTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSC------GGGGGGGCCCEEE
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCCeEEEEECC------hhhcccccccCCE
Confidence            56789999999999999999975   36899999999999988753      467777765      4443333568999


Q ss_pred             EEEccc------cccC-------C----------hhHHHHHHHHhhcCCCeEEEEEecC
Q 037961          103 VTIASA------LHWF-------D----------LPQFYKQVKWVLKKPSGVIAAWTYT  138 (262)
Q Consensus       103 V~~~~~------~~~~-------d----------~~~~l~~~~r~Lk~pgG~l~i~~~~  138 (262)
                      |++...      ++..       .          ...+++++.++|| |||+|++.+++
T Consensus       191 Il~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~Lk-pGG~lv~stcs  248 (315)
T 1ixk_A          191 ILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLK-PGGILVYSTCS  248 (315)
T ss_dssp             EEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEE-EEEEEEEEESC
T ss_pred             EEEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCC-CCCEEEEEeCC
Confidence            998533      2111       1          1478999999999 99999986664

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=99.29  E-value=9.8e-12  Score=104.93  Aligned_cols=100  Identities=14%  Similarity=0.085  Sum_probs=77.6

Q ss_pred             CCCCeEEEEcCcccHhHHHHHhh--C-CeEEEEcCCHHHHHHHhcC------CCceEEeCCCCchhhhhhccC----CCC
Q 037961           32 PKRNLAWDVGTRSGQAAASLAQI--Y-QHVIATDTSPKQLKFAIKL------PNIRYQLTPTMSITELEQNVA----TQS   98 (262)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~--~-~~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~~~~~~~----~~~   98 (262)
                      .++.+|||+|||+|..+..+++.  + .+|+|+|+|+.+++.++++      .++.+..+|      +..++.    ..+
T Consensus        82 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D------~~~~~~~~~~~~~  155 (274)
T 3ajd_A           82 REDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVLNTIIINAD------MRKYKDYLLKNEI  155 (274)
T ss_dssp             CTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESC------HHHHHHHHHHTTC
T ss_pred             CCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCC------hHhcchhhhhccc
Confidence            46789999999999999999984  4 7899999999999988753      467888765      333322    256


Q ss_pred             ceeeEEEcccccc------------------C-ChhHHHHHHHHhhcCCCeEEEEEecC
Q 037961           99 SVDLVTIASALHW------------------F-DLPQFYKQVKWVLKKPSGVIAAWTYT  138 (262)
Q Consensus        99 ~~D~V~~~~~~~~------------------~-d~~~~l~~~~r~Lk~pgG~l~i~~~~  138 (262)
                      +||+|++...+..                  . ...++++++.++|| |||+|++.+++
T Consensus       156 ~fD~Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~Lk-pgG~lv~stcs  213 (274)
T 3ajd_A          156 FFDKILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLK-KDGELVYSTCS  213 (274)
T ss_dssp             CEEEEEEEECCC------------HHHHTGGGTCHHHHHHHHHHHEE-EEEEEEEEESC
T ss_pred             cCCEEEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCC-CCCEEEEEECC
Confidence            8999998743321                  1 34679999999999 99999986654

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}

Probab=99.27  E-value=2.2e-11  Score=107.28  Aligned_cols=96  Identities=13%  Similarity=0.058  Sum_probs=76.9

Q ss_pred             CCCeEEEEcCcccHhHHHHHhhC--CeEEEEcCCHHHHHHHhcC------CCceEEeCCCCchhhhhh-ccC-CCCceee
Q 037961           33 KRNLAWDVGTRSGQAAASLAQIY--QHVIATDTSPKQLKFAIKL------PNIRYQLTPTMSITELEQ-NVA-TQSSVDL  102 (262)
Q Consensus        33 ~~~~vlDvGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~~~~-~~~-~~~~~D~  102 (262)
                      ++.+|||+| |+|.++..++..+  .+|+++|+|+.|++.|+++      .+++++.+|      +.. ++. .+++||+
T Consensus       172 ~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~~~v~~~~~D------~~~~l~~~~~~~fD~  244 (373)
T 2qm3_A          172 ENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGYEDIEIFTFD------LRKPLPDYALHKFDT  244 (373)
T ss_dssp             TTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTCCCEEEECCC------TTSCCCTTTSSCBSE
T ss_pred             CCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEECh------hhhhchhhccCCccE
Confidence            578999999 9999999998875  4899999999999999863      267888766      333 332 3468999


Q ss_pred             EEEccccccCChhHHHHHHHHhhcCCCeEEEEEe
Q 037961          103 VTIASALHWFDLPQFYKQVKWVLKKPSGVIAAWT  136 (262)
Q Consensus       103 V~~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~  136 (262)
                      |+++..+++.....+++++.++|| |||+++++.
T Consensus       245 Vi~~~p~~~~~~~~~l~~~~~~Lk-pgG~~~~~~  277 (373)
T 2qm3_A          245 FITDPPETLEAIRAFVGRGIATLK-GPRCAGYFG  277 (373)
T ss_dssp             EEECCCSSHHHHHHHHHHHHHTBC-STTCEEEEE
T ss_pred             EEECCCCchHHHHHHHHHHHHHcc-cCCeEEEEE
Confidence            999988776555789999999999 999654433

>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*

Probab=99.26  E-value=1.3e-11  Score=102.01  Aligned_cols=108  Identities=14%  Similarity=0.203  Sum_probs=85.7

Q ss_pred             HHHHHHHHhhCCCCCeEEEEcCcccHhHHHHHhh--CCeEEEEcCCHHHHHHHhcC-----CCceEEeCCCCchhhhhhc
Q 037961           21 KELFKLIASKTPKRNLAWDVGTRSGQAAASLAQI--YQHVIATDTSPKQLKFAIKL-----PNIRYQLTPTMSITELEQN   93 (262)
Q Consensus        21 ~~~~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~-----~~~~~~~~~~~~~~~~~~~   93 (262)
                      +.++..+...+++..+|||||||+|.++..++..  ..+|+++|+++.|++.++++     ....+...|      ... 
T Consensus       120 D~fY~~i~~~i~~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~~~~~~v~D------~~~-  192 (281)
T 3lcv_B          120 DEFYRELFRHLPRPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNVPHRTNVAD------LLE-  192 (281)
T ss_dssp             HHHHHHHGGGSCCCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTCCEEEEECC------TTT-
T ss_pred             HHHHHHHHhccCCCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEee------ecc-
Confidence            6667777777777889999999999999998775  56999999999999998863     345555554      211 


Q ss_pred             cCCCCceeeEEEccccccCChh---HHHHHHHHhhcCCCeEEEEEec
Q 037961           94 VATQSSVDLVTIASALHWFDLP---QFYKQVKWVLKKPSGVIAAWTY  137 (262)
Q Consensus        94 ~~~~~~~D~V~~~~~~~~~d~~---~~l~~~~r~Lk~pgG~l~i~~~  137 (262)
                      ..+.+++|+|+++-++|.++.+   ..+ ++.+.|+ |+|.++-+..
T Consensus       193 ~~p~~~~DvaL~lkti~~Le~q~kg~g~-~ll~aL~-~~~vvVSfp~  237 (281)
T 3lcv_B          193 DRLDEPADVTLLLKTLPCLETQQRGSGW-EVIDIVN-SPNIVVTFPT  237 (281)
T ss_dssp             SCCCSCCSEEEETTCHHHHHHHSTTHHH-HHHHHSS-CSEEEEEEEC
T ss_pred             cCCCCCcchHHHHHHHHHhhhhhhHHHH-HHHHHhC-CCCEEEeccc
Confidence            1257889999999999999433   255 9999999 9999987665

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51

Probab=99.26  E-value=1.2e-11  Score=109.71  Aligned_cols=109  Identities=15%  Similarity=0.118  Sum_probs=82.2

Q ss_pred             HHHHHhhCCCCCeEEEEcCcccHhHHHHHhhCC-eEEEEcCCHHHHHHHhcC------C-CceEEeCCCCchhhhhhc--
Q 037961           24 FKLIASKTPKRNLAWDVGTRSGQAAASLAQIYQ-HVIATDTSPKQLKFAIKL------P-NIRYQLTPTMSITELEQN--   93 (262)
Q Consensus        24 ~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~------~-~~~~~~~~~~~~~~~~~~--   93 (262)
                      ...+....+++.+|||+|||+|.++..++..++ +|+|+|+|+.+++.|+++      . ++.+..+|      +.+.  
T Consensus       208 ~~~~~~~~~~~~~VLDl~~G~G~~~~~la~~g~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d------~~~~~~  281 (396)
T 2as0_A          208 RLALEKWVQPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGS------AFEEME  281 (396)
T ss_dssp             HHHHGGGCCTTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESC------HHHHHH
T ss_pred             HHHHHHHhhCCCeEEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECC------HHHHHH
Confidence            334444444778999999999999999999854 899999999999998853      2 67888776      2222  


Q ss_pred             --cCCCCceeeEEEccccc---------cC-ChhHHHHHHHHhhcCCCeEEEEEecCC
Q 037961           94 --VATQSSVDLVTIASALH---------WF-DLPQFYKQVKWVLKKPSGVIAAWTYTM  139 (262)
Q Consensus        94 --~~~~~~~D~V~~~~~~~---------~~-d~~~~l~~~~r~Lk~pgG~l~i~~~~~  139 (262)
                        .-..++||+|++.....         +. +...++.++.++|+ |||.|++.++..
T Consensus       282 ~~~~~~~~fD~Vi~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~Lk-pgG~lv~~~~~~  338 (396)
T 2as0_A          282 KLQKKGEKFDIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVK-DGGILVTCSCSQ  338 (396)
T ss_dssp             HHHHTTCCEEEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEE-EEEEEEEEECCT
T ss_pred             HHHhhCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHhcC-CCcEEEEEECCC
Confidence              11356899999965432         22 45668899999999 999998876654

>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*

Probab=99.25  E-value=2.2e-11  Score=99.64  Aligned_cols=106  Identities=12%  Similarity=0.038  Sum_probs=82.1

Q ss_pred             HHHHHHHHhhCCCCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhcC-----CCceEEeCCCCchhhhhhccC
Q 037961           21 KELFKLIASKTPKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKL-----PNIRYQLTPTMSITELEQNVA   95 (262)
Q Consensus        21 ~~~~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~-----~~~~~~~~~~~~~~~~~~~~~   95 (262)
                      +.++..+... ++..+|||||||+|.++..+. ...+|+|+|+|+.|++.+++.     .+..+...|      ....+ 
T Consensus        94 d~fY~~i~~~-~~p~~VLDlGCG~gpLal~~~-~~~~y~a~DId~~~i~~ar~~~~~~g~~~~~~v~D------~~~~~-  164 (253)
T 3frh_A           94 DTLYDFIFSA-ETPRRVLDIACGLNPLALYER-GIASVWGCDIHQGLGDVITPFAREKDWDFTFALQD------VLCAP-  164 (253)
T ss_dssp             HHHHHHHTSS-CCCSEEEEETCTTTHHHHHHT-TCSEEEEEESBHHHHHHHHHHHHHTTCEEEEEECC------TTTSC-
T ss_pred             HHHHHHHhcC-CCCCeEEEecCCccHHHHHhc-cCCeEEEEeCCHHHHHHHHHHHHhcCCCceEEEee------cccCC-
Confidence            5566666666 677899999999999999988 677999999999999999863     445566554      33333 


Q ss_pred             CCCceeeEEEccccccC-ChhH-HHHHHHHhhcCCCeEEEEEe
Q 037961           96 TQSSVDLVTIASALHWF-DLPQ-FYKQVKWVLKKPSGVIAAWT  136 (262)
Q Consensus        96 ~~~~~D~V~~~~~~~~~-d~~~-~l~~~~r~Lk~pgG~l~i~~  136 (262)
                      +.+++|+|++.-++|.+ +.++ ..-++.+.|+ ++|+++-+.
T Consensus       165 ~~~~~DvvLllk~lh~LE~q~~~~~~~ll~aL~-~~~vvVsfP  206 (253)
T 3frh_A          165 PAEAGDLALIFKLLPLLEREQAGSAMALLQSLN-TPRMAVSFP  206 (253)
T ss_dssp             CCCBCSEEEEESCHHHHHHHSTTHHHHHHHHCB-CSEEEEEEE
T ss_pred             CCCCcchHHHHHHHHHhhhhchhhHHHHHHHhc-CCCEEEEcC
Confidence            45589999999999999 3222 4448899999 999888755

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*

Probab=99.24  E-value=3.4e-11  Score=104.58  Aligned_cols=101  Identities=16%  Similarity=0.153  Sum_probs=79.9

Q ss_pred             HHHhhCCCCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhcC-------CCceEEeCCCCchhhhhhccCCCC
Q 037961           26 LIASKTPKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKL-------PNIRYQLTPTMSITELEQNVATQS   98 (262)
Q Consensus        26 ~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~~~~~~~~~~   98 (262)
                      .+.....++.+|||+|||+|.++.. +..+.+|+|+|+|+.+++.++++       .++.+..+|      +.+..   +
T Consensus       188 ~i~~~~~~~~~VLDlg~G~G~~~l~-a~~~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D------~~~~~---~  257 (336)
T 2yx1_A          188 RIMKKVSLNDVVVDMFAGVGPFSIA-CKNAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSD------VREVD---V  257 (336)
T ss_dssp             HHHHHCCTTCEEEETTCTTSHHHHH-TTTSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESC------GGGCC---C
T ss_pred             HHHHhcCCCCEEEEccCccCHHHHh-ccCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECC------hHHhc---C
Confidence            4445567888999999999999999 88777999999999999998863       467888775      33332   7


Q ss_pred             ceeeEEEccccccCChhHHHHHHHHhhcCCCeEEEEEecCCC
Q 037961           99 SVDLVTIASALHWFDLPQFYKQVKWVLKKPSGVIAAWTYTMP  140 (262)
Q Consensus        99 ~~D~V~~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~~~~  140 (262)
                      +||+|+++....   ...++..+.++|+ |||.+++..+...
T Consensus       258 ~fD~Vi~dpP~~---~~~~l~~~~~~L~-~gG~l~~~~~~~~  295 (336)
T 2yx1_A          258 KGNRVIMNLPKF---AHKFIDKALDIVE-EGGVIHYYTIGKD  295 (336)
T ss_dssp             CEEEEEECCTTT---GGGGHHHHHHHEE-EEEEEEEEEEESS
T ss_pred             CCcEEEECCcHh---HHHHHHHHHHHcC-CCCEEEEEEeecC
Confidence            899999874322   2478999999999 9999998665543

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*

Probab=99.24  E-value=1.1e-11  Score=109.59  Aligned_cols=100  Identities=22%  Similarity=0.221  Sum_probs=78.4

Q ss_pred             CCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhcC------CCceEEeCCCCchhhhhhcc----CCCCceee
Q 037961           33 KRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKL------PNIRYQLTPTMSITELEQNV----ATQSSVDL  102 (262)
Q Consensus        33 ~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~~~~~~----~~~~~~D~  102 (262)
                      ++.+|||+|||+|.++..++..+.+|+++|+|+.+++.|+++      .++.+..+|      +.++.    -...+||+
T Consensus       209 ~~~~VLDlg~G~G~~~~~la~~~~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d------~~~~~~~~~~~~~~fD~  282 (382)
T 1wxx_A          209 RGERALDVFSYAGGFALHLALGFREVVAVDSSAEALRRAEENARLNGLGNVRVLEAN------AFDLLRRLEKEGERFDL  282 (382)
T ss_dssp             CEEEEEEETCTTTHHHHHHHHHEEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESC------HHHHHHHHHHTTCCEEE
T ss_pred             CCCeEEEeeeccCHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEECC------HHHHHHHHHhcCCCeeE
Confidence            678899999999999999998877999999999999998853      457888876      22221    12568999


Q ss_pred             EEEcccccc---------C-ChhHHHHHHHHhhcCCCeEEEEEecCC
Q 037961          103 VTIASALHW---------F-DLPQFYKQVKWVLKKPSGVIAAWTYTM  139 (262)
Q Consensus       103 V~~~~~~~~---------~-d~~~~l~~~~r~Lk~pgG~l~i~~~~~  139 (262)
                      |++......         . +...++.++.++|+ |||.|++.++..
T Consensus       283 Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~Lk-pgG~l~~~~~~~  328 (382)
T 1wxx_A          283 VVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLK-EGGILATASCSH  328 (382)
T ss_dssp             EEECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEE-EEEEEEEEECCT
T ss_pred             EEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcC-CCCEEEEEECCC
Confidence            998654321         2 34568899999999 999999877653

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}

Probab=99.23  E-value=3.7e-11  Score=106.66  Aligned_cols=110  Identities=12%  Similarity=0.098  Sum_probs=80.2

Q ss_pred             HHHhhCCCCCeEEEEcCcccHhHHHHHhhC-CeEEEEcCCHHHHHHHhcC-------C-CceEEeCCCCchhhhhhccCC
Q 037961           26 LIASKTPKRNLAWDVGTRSGQAAASLAQIY-QHVIATDTSPKQLKFAIKL-------P-NIRYQLTPTMSITELEQNVAT   96 (262)
Q Consensus        26 ~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~-------~-~~~~~~~~~~~~~~~~~~~~~   96 (262)
                      .+... .++.+|||+|||+|.++..++..+ .+|+|+|+|+.+++.|+++       . +++++.+|....  ...+...
T Consensus       214 ~l~~~-~~~~~VLDl~cG~G~~sl~la~~g~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~--~~~~~~~  290 (396)
T 3c0k_A          214 ATRRY-VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKL--LRTYRDR  290 (396)
T ss_dssp             HHHHH-CTTCEEEEESCTTCSHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHH--HHHHHHT
T ss_pred             HHHHh-hCCCeEEEeeccCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHH--HHHHHhc
Confidence            34333 567899999999999999999986 5899999999999998853       2 577887761000  1111112


Q ss_pred             CCceeeEEEcccc---------ccC-ChhHHHHHHHHhhcCCCeEEEEEecCC
Q 037961           97 QSSVDLVTIASAL---------HWF-DLPQFYKQVKWVLKKPSGVIAAWTYTM  139 (262)
Q Consensus        97 ~~~~D~V~~~~~~---------~~~-d~~~~l~~~~r~Lk~pgG~l~i~~~~~  139 (262)
                      ..+||+|++....         +.. +...++.++.++|+ |||.+++.++..
T Consensus       291 ~~~fD~Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~Lk-pgG~l~~~~~~~  342 (396)
T 3c0k_A          291 GEKFDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLN-EGGILLTFSCSG  342 (396)
T ss_dssp             TCCEEEEEECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEE-EEEEEEEEECCT
T ss_pred             CCCCCEEEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcC-CCcEEEEEeCCC
Confidence            4689999997543         122 45668999999999 999999866653

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*

Probab=99.22  E-value=3.9e-11  Score=98.00  Aligned_cols=117  Identities=16%  Similarity=0.144  Sum_probs=85.3

Q ss_pred             HHHHHhhCCCCCeEEEEcCcccHhHHHHHhhC--CeEEEEcCCHHHHHHHhcC-------CCceEEeCCCCchhhhhhcc
Q 037961           24 FKLIASKTPKRNLAWDVGTRSGQAAASLAQIY--QHVIATDTSPKQLKFAIKL-------PNIRYQLTPTMSITELEQNV   94 (262)
Q Consensus        24 ~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~~~~~~   94 (262)
                      +..+....+++.+|||+|||+|.++..++..+  .+|+|+|+++.+++.|+++       .++++..+|.     ++.+ 
T Consensus         6 L~~l~~~v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~-----l~~l-   79 (225)
T 3kr9_A            6 LELVASFVSQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANG-----LAAF-   79 (225)
T ss_dssp             HHHHHTTSCTTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSG-----GGGC-
T ss_pred             HHHHHHhCCCCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECch-----hhhc-
Confidence            45677788888999999999999999999976  4799999999999999863       3578887761     1223 


Q ss_pred             CCCC-ceeeEEEccccccCChhHHHHHHHHhhcCCCeEEEEEecCCCcccHHHHHhhcc
Q 037961           95 ATQS-SVDLVTIASALHWFDLPQFYKQVKWVLKKPSGVIAAWTYTMPEINESVGAVFKP  152 (262)
Q Consensus        95 ~~~~-~~D~V~~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~~~~~~~~~~~~~~~~  152 (262)
                       +.+ +||+|+++.+-. --...++.++.+.|+ |+|+|++-....   .+.+++.+.+
T Consensus        80 -~~~~~~D~IviaG~Gg-~~i~~Il~~~~~~L~-~~~~lVlq~~~~---~~~vr~~L~~  132 (225)
T 3kr9_A           80 -EETDQVSVITIAGMGG-RLIARILEEGLGKLA-NVERLILQPNNR---EDDLRIWLQD  132 (225)
T ss_dssp             -CGGGCCCEEEEEEECH-HHHHHHHHHTGGGCT-TCCEEEEEESSC---HHHHHHHHHH
T ss_pred             -ccCcCCCEEEEcCCCh-HHHHHHHHHHHHHhC-CCCEEEEECCCC---HHHHHHHHHH
Confidence             323 699998654311 114568889999999 999999855422   2445555444

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}

Probab=99.22  E-value=3.7e-11  Score=98.33  Aligned_cols=118  Identities=15%  Similarity=0.110  Sum_probs=85.2

Q ss_pred             HHHHHhhCCCCCeEEEEcCcccHhHHHHHhhC--CeEEEEcCCHHHHHHHhcC-------CCceEEeCCCCchhhhhhcc
Q 037961           24 FKLIASKTPKRNLAWDVGTRSGQAAASLAQIY--QHVIATDTSPKQLKFAIKL-------PNIRYQLTPTMSITELEQNV   94 (262)
Q Consensus        24 ~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~~~~~~   94 (262)
                      +..+..+.+++.+|||+|||+|.++..++..+  .+|+|+|+++.+++.|+++       .++++..+|      ..+..
T Consensus        12 L~~i~~~v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD------~l~~~   85 (230)
T 3lec_A           12 LQKVANYVPKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLAN------GLSAF   85 (230)
T ss_dssp             HHHHHTTSCTTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECS------GGGGC
T ss_pred             HHHHHHhCCCCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECc------hhhcc
Confidence            55677888889999999999999999999976  3799999999999999863       358888876      22222


Q ss_pred             CCCCceeeEEEccccccCChhHHHHHHHHhhcCCCeEEEEEecCCCcccHHHHHhhcc
Q 037961           95 ATQSSVDLVTIASALHWFDLPQFYKQVKWVLKKPSGVIAAWTYTMPEINESVGAVFKP  152 (262)
Q Consensus        95 ~~~~~~D~V~~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~~~~~~~~~~~~~~~~  152 (262)
                      .+..+||+|+++..-- --...++.+..+.|+ ++|.|++.....   ...+++.+.+
T Consensus        86 ~~~~~~D~IviaGmGg-~lI~~IL~~~~~~l~-~~~~lIlqp~~~---~~~lr~~L~~  138 (230)
T 3lec_A           86 EEADNIDTITICGMGG-RLIADILNNDIDKLQ-HVKTLVLQPNNR---EDDLRKWLAA  138 (230)
T ss_dssp             CGGGCCCEEEEEEECH-HHHHHHHHHTGGGGT-TCCEEEEEESSC---HHHHHHHHHH
T ss_pred             ccccccCEEEEeCCch-HHHHHHHHHHHHHhC-cCCEEEEECCCC---hHHHHHHHHH
Confidence            2333799988643321 113457888888999 999999866432   2444554444

>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}

Probab=99.22  E-value=2.4e-11  Score=103.86  Aligned_cols=85  Identities=14%  Similarity=0.178  Sum_probs=64.6

Q ss_pred             HHHHHHHHhhC--CCCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhcC------CCceEEeCCCCchhhhhh
Q 037961           21 KELFKLIASKT--PKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKL------PNIRYQLTPTMSITELEQ   92 (262)
Q Consensus        21 ~~~~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~~~~   92 (262)
                      +.+.+.+....  .++.+|||+|||+|.++..+++.+.+|+|+|+|+.|++.+++.      ++++++.+|      +..
T Consensus        28 ~~i~~~i~~~~~~~~~~~VLDiG~G~G~lt~~La~~~~~v~~vDi~~~~~~~a~~~~~~~~~~~v~~~~~D------~~~  101 (299)
T 2h1r_A           28 PGILDKIIYAAKIKSSDIVLEIGCGTGNLTVKLLPLAKKVITIDIDSRMISEVKKRCLYEGYNNLEVYEGD------AIK  101 (299)
T ss_dssp             HHHHHHHHHHHCCCTTCEEEEECCTTSTTHHHHTTTSSEEEEECSCHHHHHHHHHHHHHTTCCCEEC----------CCS
T ss_pred             HHHHHHHHHhcCCCCcCEEEEEcCcCcHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEECc------hhh
Confidence            45566665554  4678999999999999999999999999999999999988752      466776654      444


Q ss_pred             ccCCCCceeeEEEccccccCC
Q 037961           93 NVATQSSVDLVTIASALHWFD  113 (262)
Q Consensus        93 ~~~~~~~~D~V~~~~~~~~~d  113 (262)
                      .+  .++||+|+++...+|..
T Consensus       102 ~~--~~~~D~Vv~n~py~~~~  120 (299)
T 2h1r_A          102 TV--FPKFDVCTANIPYKISS  120 (299)
T ss_dssp             SC--CCCCSEEEEECCGGGHH
T ss_pred             CC--cccCCEEEEcCCccccc
Confidence            43  34799999999888763

>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*

Probab=99.21  E-value=5.1e-11  Score=100.42  Aligned_cols=102  Identities=15%  Similarity=0.129  Sum_probs=81.1

Q ss_pred             HHHHhhCCCCCeEEEEcCcccHhHHHHHhhC-CeEEEEcCCHHHHHHHhcC-------CCceEEeCCCCchhhhhhccCC
Q 037961           25 KLIASKTPKRNLAWDVGTRSGQAAASLAQIY-QHVIATDTSPKQLKFAIKL-------PNIRYQLTPTMSITELEQNVAT   96 (262)
Q Consensus        25 ~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~~~~~~~~   96 (262)
                      ..+....+++.+|||+|||+|.++..++..+ ++|+++|+||.+++.++++       ..+.+..+|      +.+++ .
T Consensus       117 ~ri~~~~~~g~~VlD~~aG~G~~~i~~a~~g~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D------~~~~~-~  189 (278)
T 3k6r_A          117 VRMAKVAKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMD------NRDFP-G  189 (278)
T ss_dssp             HHHHHHCCTTCEEEETTCTTTTTTHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSC------TTTCC-C
T ss_pred             HHHHHhcCCCCEEEEecCcCcHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCc------HHHhc-c
Confidence            3566777899999999999999999999987 5899999999999998853       346777665      33333 4


Q ss_pred             CCceeeEEEccccccCChhHHHHHHHHhhcCCCeEEEEEec
Q 037961           97 QSSVDLVTIASALHWFDLPQFYKQVKWVLKKPSGVIAAWTY  137 (262)
Q Consensus        97 ~~~~D~V~~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~  137 (262)
                      .+.||.|+++...   ....++..+.++|| |||+|.++..
T Consensus       190 ~~~~D~Vi~~~p~---~~~~~l~~a~~~lk-~gG~ih~~~~  226 (278)
T 3k6r_A          190 ENIADRILMGYVV---RTHEFIPKALSIAK-DGAIIHYHNT  226 (278)
T ss_dssp             CSCEEEEEECCCS---SGGGGHHHHHHHEE-EEEEEEEEEE
T ss_pred             ccCCCEEEECCCC---cHHHHHHHHHHHcC-CCCEEEEEee
Confidence            6789999977442   34568889999999 9999987554

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}

Probab=99.21  E-value=4.1e-11  Score=98.87  Aligned_cols=118  Identities=12%  Similarity=0.008  Sum_probs=84.6

Q ss_pred             HHHHHhhCCCCCeEEEEcCcccHhHHHHHhhC--CeEEEEcCCHHHHHHHhcC-------CCceEEeCCCCchhhhhhcc
Q 037961           24 FKLIASKTPKRNLAWDVGTRSGQAAASLAQIY--QHVIATDTSPKQLKFAIKL-------PNIRYQLTPTMSITELEQNV   94 (262)
Q Consensus        24 ~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~~~~~~   94 (262)
                      +..+....+++.+|||||||+|.++..++..+  .+|+|+|+++.+++.|+++       .++++..+|      ..+..
T Consensus        12 L~~i~~~v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD------~l~~~   85 (244)
T 3gnl_A           12 LEKVASYITKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGN------GLAVI   85 (244)
T ss_dssp             HHHHHTTCCSSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECS------GGGGC
T ss_pred             HHHHHHhCCCCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecc------hhhcc
Confidence            56677888899999999999999999999976  3799999999999999863       347888776      22222


Q ss_pred             CCCCceeeEEEccccccCChhHHHHHHHHhhcCCCeEEEEEecCCCcccHHHHHhhcc
Q 037961           95 ATQSSVDLVTIASALHWFDLPQFYKQVKWVLKKPSGVIAAWTYTMPEINESVGAVFKP  152 (262)
Q Consensus        95 ~~~~~~D~V~~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~~~~~~~~~~~~~~~~  152 (262)
                      .+..+||+|+++.+-- --....+.+..+.|+ ++|.|++.....   .+.+++.+.+
T Consensus        86 ~~~~~~D~IviagmGg-~lI~~IL~~~~~~L~-~~~~lIlq~~~~---~~~lr~~L~~  138 (244)
T 3gnl_A           86 EKKDAIDTIVIAGMGG-TLIRTILEEGAAKLA-GVTKLILQPNIA---AWQLREWSEQ  138 (244)
T ss_dssp             CGGGCCCEEEEEEECH-HHHHHHHHHTGGGGT-TCCEEEEEESSC---HHHHHHHHHH
T ss_pred             CccccccEEEEeCCch-HHHHHHHHHHHHHhC-CCCEEEEEcCCC---hHHHHHHHHH
Confidence            2233599988643311 013457888889999 999999865432   2444444443

>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24

Probab=99.20  E-value=3e-13  Score=112.36  Aligned_cols=107  Identities=11%  Similarity=0.143  Sum_probs=79.2

Q ss_pred             HHHHHHHHhhC--CCCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhcC----CCceEEeCCCCchhhhhhcc
Q 037961           21 KELFKLIASKT--PKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKL----PNIRYQLTPTMSITELEQNV   94 (262)
Q Consensus        21 ~~~~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~----~~~~~~~~~~~~~~~~~~~~   94 (262)
                      +.+.+.+.+..  .++.+|||+|||+|.++..+++.+.+|+|+|+|+.|++.+++.    .+++++.+|      +.+++
T Consensus        15 ~~~~~~i~~~~~~~~~~~VLDiG~G~G~~~~~l~~~~~~v~~id~~~~~~~~a~~~~~~~~~v~~~~~D------~~~~~   88 (245)
T 1yub_A           15 EKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKISKQVTSIELDSHLFNLSSEKLKLNTRVTLIHQD------ILQFQ   88 (245)
T ss_dssp             TTTHHHHHHHCCCCSSEEEEECSCCCSSCSHHHHHHSSEEEESSSSCSSSSSSSCTTTTCSEEEECCSC------CTTTT
T ss_pred             HHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHhCCeEEEEECCHHHHHHHHHHhccCCceEEEECC------hhhcC
Confidence            34455565554  3677899999999999999999999999999999999988764    356666554      55555


Q ss_pred             CC-CCceeeEEEccccc------------cCChhHHH----HHHHHhhcCCCeEEEEE
Q 037961           95 AT-QSSVDLVTIASALH------------WFDLPQFY----KQVKWVLKKPSGVIAAW  135 (262)
Q Consensus        95 ~~-~~~~D~V~~~~~~~------------~~d~~~~l----~~~~r~Lk~pgG~l~i~  135 (262)
                      ++ +++| .|+++...+            +.+...++    +.+.|+|+ |||.+.+.
T Consensus        89 ~~~~~~f-~vv~n~Py~~~~~~~~~~~~~~~~~~~~lm~q~e~a~rll~-~~G~l~v~  144 (245)
T 1yub_A           89 FPNKQRY-KIVGNIPYHLSTQIIKKVVFESRASDIYLIVEEGFYKRTLD-IHRTLGLL  144 (245)
T ss_dssp             CCCSSEE-EEEEECCSSSCHHHHHHHHHHCCCEEEEEEEESSHHHHHHC-GGGSHHHH
T ss_pred             cccCCCc-EEEEeCCccccHHHHHHHHhCCCCCeEEEEeeHHHHHHHhC-CCCchhhh
Confidence            55 3678 677764332            22444555    77999999 99988773

>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A

Probab=99.20  E-value=3.6e-11  Score=99.78  Aligned_cols=85  Identities=15%  Similarity=0.098  Sum_probs=65.9

Q ss_pred             hHHHHHHHHhhCC--CCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhcC----CCceEEeCCCCchhhhhhc
Q 037961           20 PKELFKLIASKTP--KRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKL----PNIRYQLTPTMSITELEQN   93 (262)
Q Consensus        20 p~~~~~~l~~~~~--~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~----~~~~~~~~~~~~~~~~~~~   93 (262)
                      .+.+.+.+.....  ++.+|||+|||+|.++..+++.+.+|+|+|+|+.|++.+++.    ++++++.+|      +..+
T Consensus        15 d~~~~~~i~~~~~~~~~~~VLDiG~G~G~lt~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~D------~~~~   88 (244)
T 1qam_A           15 SKHNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRCNFVTAIEIDHKLCKTTENKLVDHDNFQVLNKD------ILQF   88 (244)
T ss_dssp             CHHHHHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHHSSEEEEECSCHHHHHHHHHHTTTCCSEEEECCC------GGGC
T ss_pred             CHHHHHHHHHhCCCCCCCEEEEEeCCchHHHHHHHHcCCeEEEEECCHHHHHHHHHhhccCCCeEEEECh------HHhC
Confidence            4677778877663  678999999999999999999999999999999999998853    467777765      5556


Q ss_pred             cCCC-CceeeEEEcccccc
Q 037961           94 VATQ-SSVDLVTIASALHW  111 (262)
Q Consensus        94 ~~~~-~~~D~V~~~~~~~~  111 (262)
                      ++++ ..| .|+++...++
T Consensus        89 ~~~~~~~~-~vv~nlPy~~  106 (244)
T 1qam_A           89 KFPKNQSY-KIFGNIPYNI  106 (244)
T ss_dssp             CCCSSCCC-EEEEECCGGG
T ss_pred             CcccCCCe-EEEEeCCccc
Confidence            5553 445 5667655543

>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*

Probab=99.20  E-value=1.9e-10  Score=100.57  Aligned_cols=96  Identities=22%  Similarity=0.275  Sum_probs=75.8

Q ss_pred             CCCCeEEEEcCcccHhHHHHHhhCC--eEEEEcCCHHHHHHHhcC------CCceEEeCCCCchhhhhhccCCCCceeeE
Q 037961           32 PKRNLAWDVGTRSGQAAASLAQIYQ--HVIATDTSPKQLKFAIKL------PNIRYQLTPTMSITELEQNVATQSSVDLV  103 (262)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~D~V  103 (262)
                      ++..+|+|||||+|.++..+++++.  +++..|. |.+++.|++.      .+++++.+|      +-..+  ...+|+|
T Consensus       178 ~~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dl-p~v~~~a~~~~~~~~~~rv~~~~gD------~~~~~--~~~~D~~  248 (353)
T 4a6d_A          178 SVFPLMCDLGGGAGALAKECMSLYPGCKITVFDI-PEVVWTAKQHFSFQEEEQIDFQEGD------FFKDP--LPEADLY  248 (353)
T ss_dssp             GGCSEEEEETCTTSHHHHHHHHHCSSCEEEEEEC-HHHHHHHHHHSCC--CCSEEEEESC------TTTSC--CCCCSEE
T ss_pred             ccCCeEEeeCCCCCHHHHHHHHhCCCceeEeccC-HHHHHHHHHhhhhcccCceeeecCc------cccCC--CCCceEE
Confidence            3567899999999999999999754  6777887 7899988752      578888876      32222  3357999


Q ss_pred             EEccccccC-Ch--hHHHHHHHHhhcCCCeEEEEEec
Q 037961          104 TIASALHWF-DL--PQFYKQVKWVLKKPSGVIAAWTY  137 (262)
Q Consensus       104 ~~~~~~~~~-d~--~~~l~~~~r~Lk~pgG~l~i~~~  137 (262)
                      ++..++|.. |.  .+++++++++|+ |||+++|...
T Consensus       249 ~~~~vlh~~~d~~~~~iL~~~~~al~-pgg~lli~e~  284 (353)
T 4a6d_A          249 ILARVLHDWADGKCSHLLERIYHTCK-PGGGILVIES  284 (353)
T ss_dssp             EEESSGGGSCHHHHHHHHHHHHHHCC-TTCEEEEEEC
T ss_pred             EeeeecccCCHHHHHHHHHHHHhhCC-CCCEEEEEEe
Confidence            999999976 44  357999999999 9999998654

>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*

Probab=99.19  E-value=5.2e-11  Score=101.29  Aligned_cols=86  Identities=15%  Similarity=0.131  Sum_probs=71.0

Q ss_pred             HHHHHHHHhhC--CCCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhcC----CCceEEeCCCCchhhhhhcc
Q 037961           21 KELFKLIASKT--PKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKL----PNIRYQLTPTMSITELEQNV   94 (262)
Q Consensus        21 ~~~~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~----~~~~~~~~~~~~~~~~~~~~   94 (262)
                      +.+.+.+....  .++.+|||||||+|.+|..+++.+.+|+|+|+++.|++.+++.    ++++++.+|      +..++
T Consensus        36 ~~i~~~Iv~~l~~~~~~~VLEIG~G~G~lT~~La~~~~~V~aVEid~~li~~a~~~~~~~~~v~vi~gD------~l~~~  109 (295)
T 3gru_A           36 KNFVNKAVESANLTKDDVVLEIGLGKGILTEELAKNAKKVYVIEIDKSLEPYANKLKELYNNIEIIWGD------ALKVD  109 (295)
T ss_dssp             HHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCGGGHHHHHHHHHHCSSEEEEESC------TTTSC
T ss_pred             HHHHHHHHHhcCCCCcCEEEEECCCchHHHHHHHhcCCEEEEEECCHHHHHHHHHHhccCCCeEEEECc------hhhCC
Confidence            56677777665  4678999999999999999999999999999999999998753    688888876      44445


Q ss_pred             CCCCceeeEEEccccccC
Q 037961           95 ATQSSVDLVTIASALHWF  112 (262)
Q Consensus        95 ~~~~~~D~V~~~~~~~~~  112 (262)
                      +++.+||.|+++...++.
T Consensus       110 ~~~~~fD~Iv~NlPy~is  127 (295)
T 3gru_A          110 LNKLDFNKVVANLPYQIS  127 (295)
T ss_dssp             GGGSCCSEEEEECCGGGH
T ss_pred             cccCCccEEEEeCccccc
Confidence            556679999999887764

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=99.18  E-value=5.2e-11  Score=112.78  Aligned_cols=100  Identities=17%  Similarity=0.093  Sum_probs=78.4

Q ss_pred             CCCCeEEEEcCcccHhHHHHHhhCC-eEEEEcCCHHHHHHHhcC--------CCceEEeCCCCchhhhhh-ccCCCCcee
Q 037961           32 PKRNLAWDVGTRSGQAAASLAQIYQ-HVIATDTSPKQLKFAIKL--------PNIRYQLTPTMSITELEQ-NVATQSSVD  101 (262)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~--------~~~~~~~~~~~~~~~~~~-~~~~~~~~D  101 (262)
                      .++.+|||+|||+|.++..++..++ +|+++|+|+.+++.|+++        .+++++++|      +.+ ++...++||
T Consensus       538 ~~g~~VLDlg~GtG~~sl~aa~~ga~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D------~~~~l~~~~~~fD  611 (703)
T 3v97_A          538 SKGKDFLNLFSYTGSATVHAGLGGARSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQAD------CLAWLREANEQFD  611 (703)
T ss_dssp             CTTCEEEEESCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESC------HHHHHHHCCCCEE
T ss_pred             cCCCcEEEeeechhHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecC------HHHHHHhcCCCcc
Confidence            4678899999999999999998876 599999999999999863        257888876      222 222457899


Q ss_pred             eEEEcccc-----------ccC-ChhHHHHHHHHhhcCCCeEEEEEecC
Q 037961          102 LVTIASAL-----------HWF-DLPQFYKQVKWVLKKPSGVIAAWTYT  138 (262)
Q Consensus       102 ~V~~~~~~-----------~~~-d~~~~l~~~~r~Lk~pgG~l~i~~~~  138 (262)
                      +|++....           +.. +...++.++.++|+ |||.|++.+..
T Consensus       612 ~Ii~DPP~f~~~~~~~~~~~~~~~~~~ll~~a~~~Lk-pgG~L~~s~~~  659 (703)
T 3v97_A          612 LIFIDPPTFSNSKRMEDAFDVQRDHLALMKDLKRLLR-AGGTIMFSNNK  659 (703)
T ss_dssp             EEEECCCSBC-------CCBHHHHHHHHHHHHHHHEE-EEEEEEEEECC
T ss_pred             EEEECCccccCCccchhHHHHHHHHHHHHHHHHHhcC-CCcEEEEEECC
Confidence            99986542           333 55668999999999 99999975544

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32

Probab=99.18  E-value=1.3e-10  Score=93.53  Aligned_cols=84  Identities=13%  Similarity=0.130  Sum_probs=67.6

Q ss_pred             CCCeEEEEcCcccHhHHHHHhhCC-eEEEEcCCHHHHHHHhcCC-----CceEEeCCCCchhhhhhccCCCCceeeEEEc
Q 037961           33 KRNLAWDVGTRSGQAAASLAQIYQ-HVIATDTSPKQLKFAIKLP-----NIRYQLTPTMSITELEQNVATQSSVDLVTIA  106 (262)
Q Consensus        33 ~~~~vlDvGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~  106 (262)
                      ++.+|||+|||+|.++..+++.+. +|+|+|+|+.+++.++++.     ++.+..+|      +.+++   ++||+|+++
T Consensus        49 ~~~~vlD~g~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d------~~~~~---~~~D~v~~~  119 (207)
T 1wy7_A           49 EGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKGKFKVFIGD------VSEFN---SRVDIVIMN  119 (207)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTTSEEEEESC------GGGCC---CCCSEEEEC
T ss_pred             CcCEEEEeeCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCCCEEEEECc------hHHcC---CCCCEEEEc
Confidence            678999999999999999998865 7999999999999998631     57777765      44432   489999999


Q ss_pred             cccccCC---hhHHHHHHHHhh
Q 037961          107 SALHWFD---LPQFYKQVKWVL  125 (262)
Q Consensus       107 ~~~~~~d---~~~~l~~~~r~L  125 (262)
                      ..+|+..   ...+++++.++|
T Consensus       120 ~p~~~~~~~~~~~~l~~~~~~l  141 (207)
T 1wy7_A          120 PPFGSQRKHADRPFLLKAFEIS  141 (207)
T ss_dssp             CCCSSSSTTTTHHHHHHHHHHC
T ss_pred             CCCccccCCchHHHHHHHHHhc
Confidence            9998873   235777888776

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*

Probab=99.16  E-value=8.3e-11  Score=103.57  Aligned_cols=101  Identities=17%  Similarity=0.093  Sum_probs=75.8

Q ss_pred             hHHHHHHHHhh-CCCCCeEEEEcCcccHhHHHHHhhCC--eEEEEcCCHHHHHHHhcC-------CCceEEeCCCCchhh
Q 037961           20 PKELFKLIASK-TPKRNLAWDVGTRSGQAAASLAQIYQ--HVIATDTSPKQLKFAIKL-------PNIRYQLTPTMSITE   89 (262)
Q Consensus        20 p~~~~~~l~~~-~~~~~~vlDvGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~   89 (262)
                      ++.+...+... .+++..|||+|||+|.++..++..+.  +|+|+|+|+.|++.|+++       .++.+.++|      
T Consensus       203 ~~~la~~l~~~~~~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D------  276 (373)
T 3tm4_A          203 KASIANAMIELAELDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGD------  276 (373)
T ss_dssp             CHHHHHHHHHHHTCCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECC------
T ss_pred             cHHHHHHHHHhhcCCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECC------
Confidence            45555444333 45678899999999999999999876  999999999999999863       367888765      


Q ss_pred             hhhccCCCCceeeEEEccccccC--C---h----hHHHHHHHHhhc
Q 037961           90 LEQNVATQSSVDLVTIASALHWF--D---L----PQFYKQVKWVLK  126 (262)
Q Consensus        90 ~~~~~~~~~~~D~V~~~~~~~~~--d---~----~~~l~~~~r~Lk  126 (262)
                      +.+++.++++||+|+++..++.-  +   .    ..+++++.++|.
T Consensus       277 ~~~~~~~~~~fD~Ii~npPyg~r~~~~~~~~~ly~~~~~~l~r~l~  322 (373)
T 3tm4_A          277 ATQLSQYVDSVDFAISNLPYGLKIGKKSMIPDLYMKFFNELAKVLE  322 (373)
T ss_dssp             GGGGGGTCSCEEEEEEECCCC------CCHHHHHHHHHHHHHHHEE
T ss_pred             hhhCCcccCCcCEEEECCCCCcccCcchhHHHHHHHHHHHHHHHcC
Confidence            66666677899999998776532  1   1    456777777774

>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*

Probab=99.15  E-value=1.1e-10  Score=104.16  Aligned_cols=107  Identities=16%  Similarity=0.214  Sum_probs=83.2

Q ss_pred             hHHHHHHHHhhCC--CCCeEEEEcCcccHhHHHHHhh---CCeEEEEcCCHHHHHHHhcCCCceEEeCCCCchhhhhhcc
Q 037961           20 PKELFKLIASKTP--KRNLAWDVGTRSGQAAASLAQI---YQHVIATDTSPKQLKFAIKLPNIRYQLTPTMSITELEQNV   94 (262)
Q Consensus        20 p~~~~~~l~~~~~--~~~~vlDvGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~   94 (262)
                      |+.+.+.+.....  +..+|||+|||+|.++..++++   ..+++|+|+++.+++.|   .++.+..+|      +..+.
T Consensus        24 P~~l~~~~~~~~~~~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a---~~~~~~~~D------~~~~~   94 (421)
T 2ih2_A           24 PPEVVDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP---PWAEGILAD------FLLWE   94 (421)
T ss_dssp             CHHHHHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC---TTEEEEESC------GGGCC
T ss_pred             CHHHHHHHHHhhccCCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC---CCCcEEeCC------hhhcC
Confidence            6888888888764  4679999999999999999875   47999999999998877   467888766      33332


Q ss_pred             CCCCceeeEEEccccccC-C---------h--------------------hHHHHHHHHhhcCCCeEEEEEec
Q 037961           95 ATQSSVDLVTIASALHWF-D---------L--------------------PQFYKQVKWVLKKPSGVIAAWTY  137 (262)
Q Consensus        95 ~~~~~~D~V~~~~~~~~~-d---------~--------------------~~~l~~~~r~Lk~pgG~l~i~~~  137 (262)
                       +.++||+|+++..+... .         .                    ..+++.+.++|+ |||.+++...
T Consensus        95 -~~~~fD~Ii~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk-~~G~~~~i~p  165 (421)
T 2ih2_A           95 -PGEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLK-PGGVLVFVVP  165 (421)
T ss_dssp             -CSSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEE-EEEEEEEEEE
T ss_pred             -ccCCCCEEEECcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhC-CCCEEEEEEC
Confidence             35689999998665432 1         1                    146889999999 9999998554

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}

Probab=99.14  E-value=2.3e-10  Score=103.13  Aligned_cols=100  Identities=14%  Similarity=0.185  Sum_probs=75.9

Q ss_pred             CCCCeEEEEcCcccHhHHHHHhh--C-CeEEEEcCCHHHHHHHhcC------CCceEEeCCCCchhhhhhcc--CCCCce
Q 037961           32 PKRNLAWDVGTRSGQAAASLAQI--Y-QHVIATDTSPKQLKFAIKL------PNIRYQLTPTMSITELEQNV--ATQSSV  100 (262)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~--~-~~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~~~~~~--~~~~~~  100 (262)
                      .++.+|||+|||+|..+..++..  + .+|+++|+|+.+++.++++      .++.+..+|      +...+  +++++|
T Consensus       258 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~~v~~~~~D------~~~~~~~~~~~~f  331 (450)
T 2yxl_A          258 KPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKD------ARKAPEIIGEEVA  331 (450)
T ss_dssp             CTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSC------TTCCSSSSCSSCE
T ss_pred             CCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEEEcC------hhhcchhhccCCC
Confidence            56789999999999999999985  3 6899999999999988753      467777665      33333  345789


Q ss_pred             eeEEEcc------ccccC-Ch----------------hHHHHHHHHhhcCCCeEEEEEecC
Q 037961          101 DLVTIAS------ALHWF-DL----------------PQFYKQVKWVLKKPSGVIAAWTYT  138 (262)
Q Consensus       101 D~V~~~~------~~~~~-d~----------------~~~l~~~~r~Lk~pgG~l~i~~~~  138 (262)
                      |+|++..      .++.. |.                ..+++++.++|| |||+|++.+++
T Consensus       332 D~Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~Lk-pGG~lvy~tcs  391 (450)
T 2yxl_A          332 DKVLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVK-PGGRLLYTTCS  391 (450)
T ss_dssp             EEEEEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEE-EEEEEEEEESC
T ss_pred             CEEEEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcC-CCcEEEEEeCC
Confidence            9999732      22211 11                468999999999 99999987665

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}

Probab=99.13  E-value=1.9e-10  Score=104.28  Aligned_cols=99  Identities=15%  Similarity=0.189  Sum_probs=74.9

Q ss_pred             CCCeEEEEcCcccHhHHHHHhh---CCeEEEEcCCHHHHHHHhcC------CCceEEeCCCCchhhhhhccC-CCCceee
Q 037961           33 KRNLAWDVGTRSGQAAASLAQI---YQHVIATDTSPKQLKFAIKL------PNIRYQLTPTMSITELEQNVA-TQSSVDL  102 (262)
Q Consensus        33 ~~~~vlDvGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~~~~~~~-~~~~~D~  102 (262)
                      ++.+|||+|||+|..|..++..   ..+|+++|+|+.+++.++++      .++.+..+|      +..++. .+++||+
T Consensus       117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~nv~~~~~D------~~~~~~~~~~~fD~  190 (479)
T 2frx_A          117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFD------GRVFGAAVPEMFDA  190 (479)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCC------STTHHHHSTTCEEE
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCC------HHHhhhhccccCCE
Confidence            7789999999999999999986   36899999999999988753      467777765      333221 3568999


Q ss_pred             EEEccc------cc--------cCC---------hhHHHHHHHHhhcCCCeEEEEEecC
Q 037961          103 VTIASA------LH--------WFD---------LPQFYKQVKWVLKKPSGVIAAWTYT  138 (262)
Q Consensus       103 V~~~~~------~~--------~~d---------~~~~l~~~~r~Lk~pgG~l~i~~~~  138 (262)
                      |++.-.      ++        |-.         ..++++++.++|| |||+|++.+++
T Consensus       191 Il~D~PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~Lk-pGG~LvysTcs  248 (479)
T 2frx_A          191 ILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALR-PGGTLVYSTCT  248 (479)
T ss_dssp             EEEECCCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEE-EEEEEEEEESC
T ss_pred             EEECCCcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcC-CCCEEEEeccc
Confidence            998422      11        110         2357899999999 99999986665

>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*

Probab=99.13  E-value=3.9e-10  Score=100.79  Aligned_cols=103  Identities=14%  Similarity=0.152  Sum_probs=75.3

Q ss_pred             HHHHHHHhhCCCCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhcC-----CCceEEeCCCCchhhhhhccCC
Q 037961           22 ELFKLIASKTPKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKL-----PNIRYQLTPTMSITELEQNVAT   96 (262)
Q Consensus        22 ~~~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~-----~~~~~~~~~~~~~~~~~~~~~~   96 (262)
                      .+++.+.. ..++.+|||+|||+|.++..+++.+.+|+|+|+|+.|++.|+++     ..+++..+|      +.++. +
T Consensus       280 ~l~~~~~~-~~~~~~VLDlgcG~G~~sl~la~~~~~V~gvD~s~~ai~~A~~n~~~ngl~v~~~~~d------~~~~~-~  351 (425)
T 2jjq_A          280 NLVRKVSE-LVEGEKILDMYSGVGTFGIYLAKRGFNVKGFDSNEFAIEMARRNVEINNVDAEFEVAS------DREVS-V  351 (425)
T ss_dssp             HHHHHHHH-HCCSSEEEEETCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCCEEEEECC------TTTCC-C
T ss_pred             HHHHHhhc-cCCCCEEEEeeccchHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEECC------hHHcC-c
Confidence            44555555 56778999999999999999999999999999999999999853     127788765      33332 2


Q ss_pred             CCceeeEEEccccccCChhHHHHHHHHhhcCCCeEEEEEe
Q 037961           97 QSSVDLVTIASALHWFDLPQFYKQVKWVLKKPSGVIAAWT  136 (262)
Q Consensus        97 ~~~~D~V~~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~  136 (262)
                      . +||+|+++....-. ...+++.+. .|+ |||.+++.+
T Consensus       352 ~-~fD~Vv~dPPr~g~-~~~~~~~l~-~l~-p~givyvsc  387 (425)
T 2jjq_A          352 K-GFDTVIVDPPRAGL-HPRLVKRLN-REK-PGVIVYVSC  387 (425)
T ss_dssp             T-TCSEEEECCCTTCS-CHHHHHHHH-HHC-CSEEEEEES
T ss_pred             c-CCCEEEEcCCccch-HHHHHHHHH-hcC-CCcEEEEEC
Confidence            2 89999987653221 123555554 589 999988844

>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*

Probab=99.12  E-value=2.3e-10  Score=96.94  Aligned_cols=105  Identities=14%  Similarity=0.063  Sum_probs=72.9

Q ss_pred             CCCCCeEEEEcC------cccHhHHHHHhh---CCeEEEEcCCHHHHHHHhcCCCceE-EeCCCCchhhhhhccCCCCce
Q 037961           31 TPKRNLAWDVGT------RSGQAAASLAQI---YQHVIATDTSPKQLKFAIKLPNIRY-QLTPTMSITELEQNVATQSSV  100 (262)
Q Consensus        31 ~~~~~~vlDvGc------G~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  100 (262)
                      .+++.+|||+||      |+|.  ..+++.   ..+|+|+|+|+.       .+++++ +++|      +.+.++ .++|
T Consensus        61 l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~-------v~~v~~~i~gD------~~~~~~-~~~f  124 (290)
T 2xyq_A           61 VPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF-------VSDADSTLIGD------CATVHT-ANKW  124 (290)
T ss_dssp             CCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC-------BCSSSEEEESC------GGGCCC-SSCE
T ss_pred             CCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC-------CCCCEEEEECc------cccCCc-cCcc
Confidence            357889999999      5576  333433   478999999988       247888 8765      545443 3689


Q ss_pred             eeEEEccccccC-----C-------hhHHHHHHHHhhcCCCeEEEEEecCCCcccHHHHHhhccc
Q 037961          101 DLVTIASALHWF-----D-------LPQFYKQVKWVLKKPSGVIAAWTYTMPEINESVGAVFKPF  153 (262)
Q Consensus       101 D~V~~~~~~~~~-----d-------~~~~l~~~~r~Lk~pgG~l~i~~~~~~~~~~~~~~~~~~~  153 (262)
                      |+|+++...++.     +       ...+++++.++|| |||.|++..+..... .++.+++.++
T Consensus       125 D~Vvsn~~~~~~g~~~~d~~~~~~l~~~~l~~a~r~Lk-pGG~~v~~~~~~~~~-~~l~~~l~~~  187 (290)
T 2xyq_A          125 DLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLA-LGGSIAVKITEHSWN-ADLYKLMGHF  187 (290)
T ss_dssp             EEEEECCCCCC---CCSCCCCCCTHHHHHHHHHHHHEE-EEEEEEEEECSSSCC-HHHHHHHTTE
T ss_pred             cEEEEcCCccccccccccccchHHHHHHHHHHHHHhcC-CCcEEEEEEeccCCH-HHHHHHHHHc
Confidence            999997654431     1       2368999999999 999999855443332 4555565554

>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*

Probab=99.10  E-value=3.8e-10  Score=101.26  Aligned_cols=108  Identities=12%  Similarity=0.095  Sum_probs=78.1

Q ss_pred             HHHHHHHhhC--CCCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhcC------CCceEEeCCCCchhhhhhc
Q 037961           22 ELFKLIASKT--PKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKL------PNIRYQLTPTMSITELEQN   93 (262)
Q Consensus        22 ~~~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~~~~~   93 (262)
                      .+++.+.+..  .++.+|||+|||+|.++..++..+.+|+|+|+|+.+++.|+++      .++.+..+|...  ....+
T Consensus       273 ~l~~~~~~~l~~~~~~~VLDlgcG~G~~~~~la~~~~~V~gvD~s~~al~~A~~n~~~~~~~~v~f~~~d~~~--~l~~~  350 (433)
T 1uwv_A          273 KMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEE--DVTKQ  350 (433)
T ss_dssp             HHHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTTSSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTS--CCSSS
T ss_pred             HHHHHHHHhhcCCCCCEEEECCCCCCHHHHHHHhhCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEECCHHH--Hhhhh
Confidence            4555555544  3667899999999999999999999999999999999998853      478888887111  11123


Q ss_pred             cCCCCceeeEEEccccccCChhHHHHHHHHhhcCCCeEEEEE
Q 037961           94 VATQSSVDLVTIASALHWFDLPQFYKQVKWVLKKPSGVIAAW  135 (262)
Q Consensus        94 ~~~~~~~D~V~~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~  135 (262)
                      ++++++||+|+++..-...  ..+++.+.+ ++ |++.+++.
T Consensus       351 ~~~~~~fD~Vv~dPPr~g~--~~~~~~l~~-~~-p~~ivyvs  388 (433)
T 1uwv_A          351 PWAKNGFDKVLLDPARAGA--AGVMQQIIK-LE-PIRIVYVS  388 (433)
T ss_dssp             GGGTTCCSEEEECCCTTCC--HHHHHHHHH-HC-CSEEEEEE
T ss_pred             hhhcCCCCEEEECCCCccH--HHHHHHHHh-cC-CCeEEEEE
Confidence            3456789999987665443  245555544 68 88887773

>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45

Probab=99.10  E-value=3.1e-10  Score=98.80  Aligned_cols=96  Identities=15%  Similarity=0.132  Sum_probs=75.7

Q ss_pred             CCCeEEEEcCcccHhHHHHHhhC-------CeEEEEcCCHHHHHHHhcC-----CCceEEeCCCCchhhhhhccCCCCce
Q 037961           33 KRNLAWDVGTRSGQAAASLAQIY-------QHVIATDTSPKQLKFAIKL-----PNIRYQLTPTMSITELEQNVATQSSV  100 (262)
Q Consensus        33 ~~~~vlDvGcG~G~~~~~l~~~~-------~~v~~vD~s~~~~~~a~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (262)
                      ++.+|||+|||+|.++..+++..       .+++|+|+++.+++.|+.+     .++.+..+|.+      . +...++|
T Consensus       130 ~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~~~~i~~~D~l------~-~~~~~~f  202 (344)
T 2f8l_A          130 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDGL------A-NLLVDPV  202 (344)
T ss_dssp             SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCTT------S-CCCCCCE
T ss_pred             CCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCCCceEEECCCC------C-ccccCCc
Confidence            56789999999999999988753       6899999999999998752     25677776621      1 1245789


Q ss_pred             eeEEEccccccC-Chh------------------HHHHHHHHhhcCCCeEEEEEe
Q 037961          101 DLVTIASALHWF-DLP------------------QFYKQVKWVLKKPSGVIAAWT  136 (262)
Q Consensus       101 D~V~~~~~~~~~-d~~------------------~~l~~~~r~Lk~pgG~l~i~~  136 (262)
                      |+|+++..+++. +.+                  .+++++.+.|+ |||++++..
T Consensus       203 D~Ii~NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk-~gG~~~~v~  256 (344)
T 2f8l_A          203 DVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTK-PGGYLFFLV  256 (344)
T ss_dssp             EEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEE-EEEEEEEEE
T ss_pred             cEEEECCCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhC-CCCEEEEEE
Confidence            999999998765 221                  47999999999 999999855

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=99.08  E-value=2.7e-10  Score=102.13  Aligned_cols=100  Identities=12%  Similarity=0.134  Sum_probs=75.3

Q ss_pred             CCCCeEEEEcCcccHhHHHHHhhC--CeEEEEcCCHHHHHHHhcC-----CCceEEeCCCCchhhhhhcc--CCCCceee
Q 037961           32 PKRNLAWDVGTRSGQAAASLAQIY--QHVIATDTSPKQLKFAIKL-----PNIRYQLTPTMSITELEQNV--ATQSSVDL  102 (262)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~-----~~~~~~~~~~~~~~~~~~~~--~~~~~~D~  102 (262)
                      .++.+|||+|||+|..+..+++.+  .+|+|+|+|+.+++.++++     .++.+..+|      +...+  +++++||+
T Consensus       245 ~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~~~~~~~~D------~~~~~~~~~~~~fD~  318 (429)
T 1sqg_A          245 QNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGD------GRYPSQWCGEQQFDR  318 (429)
T ss_dssp             CTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECC------TTCTHHHHTTCCEEE
T ss_pred             CCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCCCeEEEeCc------hhhchhhcccCCCCE
Confidence            467899999999999999999875  6999999999999988753     246777665      22222  34578999


Q ss_pred             EEEcccc------ccC-Ch----------------hHHHHHHHHhhcCCCeEEEEEecC
Q 037961          103 VTIASAL------HWF-DL----------------PQFYKQVKWVLKKPSGVIAAWTYT  138 (262)
Q Consensus       103 V~~~~~~------~~~-d~----------------~~~l~~~~r~Lk~pgG~l~i~~~~  138 (262)
                      |++...+      +.. +.                ..+++++.++|| |||+|++.+++
T Consensus       319 Vl~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~Lk-pGG~lvystcs  376 (429)
T 1sqg_A          319 ILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLK-TGGTLVYATCS  376 (429)
T ss_dssp             EEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEE-EEEEEEEEESC
T ss_pred             EEEeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcC-CCCEEEEEECC
Confidence            9974322      111 11                367999999999 99999986655

>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}

Probab=99.05  E-value=7.5e-10  Score=97.28  Aligned_cols=121  Identities=8%  Similarity=0.075  Sum_probs=84.0

Q ss_pred             HHHHHHHHhhCC-CCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhcC------CCceEEeCCCCchhhhhhc
Q 037961           21 KELFKLIASKTP-KRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKL------PNIRYQLTPTMSITELEQN   93 (262)
Q Consensus        21 ~~~~~~l~~~~~-~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~~~~~   93 (262)
                      +.+++.+.+... .+..|||+|||+|.++..+++.+.+|+|+|+|+.+++.|+++      .++++..+|....  ...+
T Consensus       200 ~~l~~~~~~~~~~~~~~vLDl~cG~G~~~l~la~~~~~V~gvd~~~~ai~~a~~n~~~ng~~~v~~~~~d~~~~--~~~~  277 (369)
T 3bt7_A          200 IQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEF--TQAM  277 (369)
T ss_dssp             HHHHHHHHHHTTTCCSEEEEESCTTSHHHHHHGGGSSEEEEECCCHHHHHHHHHHHHHTTCCSEEEECCCSHHH--HHHH
T ss_pred             HHHHHHHHHHhhcCCCEEEEccCCCCHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHH--HHHH
Confidence            566777766654 357899999999999999999888999999999999998752      4788888762110  0111


Q ss_pred             c------------CCCCceeeEEEccccccCChhHHHHHHHHhhcCCCeEEEEEecCCCcccHHHHHh
Q 037961           94 V------------ATQSSVDLVTIASALHWFDLPQFYKQVKWVLKKPSGVIAAWTYTMPEINESVGAV  149 (262)
Q Consensus        94 ~------------~~~~~~D~V~~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~~~~~~~~~~~~~  149 (262)
                      .            +.+.+||+|++...-.     .+..++.++|+ ++|.++...++...+.+.+..+
T Consensus       278 ~~~~~~~~l~~~~~~~~~fD~Vv~dPPr~-----g~~~~~~~~l~-~~g~ivyvsc~p~t~ard~~~l  339 (369)
T 3bt7_A          278 NGVREFNRLQGIDLKSYQCETIFVDPPRS-----GLDSETEKMVQ-AYPRILYISCNPETLCKNLETL  339 (369)
T ss_dssp             SSCCCCTTGGGSCGGGCCEEEEEECCCTT-----CCCHHHHHHHT-TSSEEEEEESCHHHHHHHHHHH
T ss_pred             hhccccccccccccccCCCCEEEECcCcc-----ccHHHHHHHHh-CCCEEEEEECCHHHHHHHHHHH
Confidence            1            0113799998643211     24577889999 8999888776654444444433

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=99.05  E-value=3.4e-10  Score=101.85  Aligned_cols=100  Identities=17%  Similarity=0.200  Sum_probs=74.4

Q ss_pred             CCCCeEEEEcCcccHhHHHHHhh---CCeEEEEcCCHHHHHHHhcC-----CCceEEeCCCCchhhhhhcc-CCCCceee
Q 037961           32 PKRNLAWDVGTRSGQAAASLAQI---YQHVIATDTSPKQLKFAIKL-----PNIRYQLTPTMSITELEQNV-ATQSSVDL  102 (262)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~-----~~~~~~~~~~~~~~~~~~~~-~~~~~~D~  102 (262)
                      .++.+|||+|||+|..|..+++.   ..+|+++|+|+.+++.++++     ..+.+..+|      +..++ ..+++||+
T Consensus       100 ~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~v~~~~~D------a~~l~~~~~~~FD~  173 (464)
T 3m6w_A          100 KPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAPLAVTQAP------PRALAEAFGTYFHR  173 (464)
T ss_dssp             CTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCCCEEECSC------HHHHHHHHCSCEEE
T ss_pred             CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCeEEEEECC------HHHhhhhccccCCE
Confidence            46789999999999999999975   25899999999999998753     126777655      33332 13578999


Q ss_pred             EEEcccc------c--------cC--C-------hhHHHHHHHHhhcCCCeEEEEEecC
Q 037961          103 VTIASAL------H--------WF--D-------LPQFYKQVKWVLKKPSGVIAAWTYT  138 (262)
Q Consensus       103 V~~~~~~------~--------~~--d-------~~~~l~~~~r~Lk~pgG~l~i~~~~  138 (262)
                      |++.-..      +        |-  +       ...+++++.++|| |||+|+..+++
T Consensus       174 Il~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~Lk-pGG~LvysTCs  231 (464)
T 3m6w_A          174 VLLDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLG-PGGVLVYSTCT  231 (464)
T ss_dssp             EEEECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEE-EEEEEEEEESC
T ss_pred             EEECCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcC-CCcEEEEEecc
Confidence            9973322      1        11  0       1558999999999 99999986665

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=99.04  E-value=4.7e-10  Score=100.83  Aligned_cols=100  Identities=16%  Similarity=0.156  Sum_probs=75.0

Q ss_pred             CCCCeEEEEcCcccHhHHHHHhh---CCeEEEEcCCHHHHHHHhcC------CCceEEeCCCCchhhhhhcc-CCCCcee
Q 037961           32 PKRNLAWDVGTRSGQAAASLAQI---YQHVIATDTSPKQLKFAIKL------PNIRYQLTPTMSITELEQNV-ATQSSVD  101 (262)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~~~~~~-~~~~~~D  101 (262)
                      .++.+|||+|||+|..|..++..   ..+|+++|+|+.+++.++++      .++.+..+|      +..++ ..+++||
T Consensus       104 ~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~nv~v~~~D------a~~l~~~~~~~FD  177 (456)
T 3m4x_A          104 KPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVSNAIVTNHA------PAELVPHFSGFFD  177 (456)
T ss_dssp             CTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCSSEEEECCC------HHHHHHHHTTCEE
T ss_pred             CCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCC------HHHhhhhccccCC
Confidence            56789999999999999999875   35899999999999988752      467777665      33332 1357899


Q ss_pred             eEEEcccc---c-----------cC-C--------hhHHHHHHHHhhcCCCeEEEEEecC
Q 037961          102 LVTIASAL---H-----------WF-D--------LPQFYKQVKWVLKKPSGVIAAWTYT  138 (262)
Q Consensus       102 ~V~~~~~~---~-----------~~-d--------~~~~l~~~~r~Lk~pgG~l~i~~~~  138 (262)
                      +|++.-.+   .           |- +        ...++.++.++|| |||+|+..+++
T Consensus       178 ~Il~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~Lk-pGG~LvYsTCs  236 (456)
T 3m4x_A          178 RIVVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLK-NKGQLIYSTCT  236 (456)
T ss_dssp             EEEEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEE-EEEEEEEEESC
T ss_pred             EEEECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcC-CCcEEEEEEee
Confidence            99985432   1           11 1        1257899999999 99999986665

>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0

Probab=99.01  E-value=6e-10  Score=92.92  Aligned_cols=83  Identities=16%  Similarity=0.101  Sum_probs=63.5

Q ss_pred             HHHHHHHHhhC--CCCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhcC----CCceEEeCCCCchhhhhhcc
Q 037961           21 KELFKLIASKT--PKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKL----PNIRYQLTPTMSITELEQNV   94 (262)
Q Consensus        21 ~~~~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~----~~~~~~~~~~~~~~~~~~~~   94 (262)
                      +.+.+.+....  .++.+|||+|||+|.+|..+++.+.+|+|+|+++.|++.+++.    ++++++.+|      +..++
T Consensus        15 ~~i~~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~~~~V~avEid~~~~~~~~~~~~~~~~v~~i~~D------~~~~~   88 (255)
T 3tqs_A           15 SFVLQKIVSAIHPQKTDTLVEIGPGRGALTDYLLTECDNLALVEIDRDLVAFLQKKYNQQKNITIYQND------ALQFD   88 (255)
T ss_dssp             HHHHHHHHHHHCCCTTCEEEEECCTTTTTHHHHTTTSSEEEEEECCHHHHHHHHHHHTTCTTEEEEESC------TTTCC
T ss_pred             HHHHHHHHHhcCCCCcCEEEEEcccccHHHHHHHHhCCEEEEEECCHHHHHHHHHHHhhCCCcEEEEcc------hHhCC
Confidence            45566666554  4678999999999999999999999999999999999998753    678899887      22222


Q ss_pred             C----CCCceeeEEEccccc
Q 037961           95 A----TQSSVDLVTIASALH  110 (262)
Q Consensus        95 ~----~~~~~D~V~~~~~~~  110 (262)
                      +    ..++|| |+++...+
T Consensus        89 ~~~~~~~~~~~-vv~NlPY~  107 (255)
T 3tqs_A           89 FSSVKTDKPLR-VVGNLPYN  107 (255)
T ss_dssp             GGGSCCSSCEE-EEEECCHH
T ss_pred             HHHhccCCCeE-EEecCCcc
Confidence            2    245788 77776543

>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*

Probab=99.00  E-value=7.5e-10  Score=93.04  Aligned_cols=85  Identities=12%  Similarity=0.062  Sum_probs=65.8

Q ss_pred             HHHHHHHHhhC--CCCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhcC---CCceEEeCCCCchhhhhhccC
Q 037961           21 KELFKLIASKT--PKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKL---PNIRYQLTPTMSITELEQNVA   95 (262)
Q Consensus        21 ~~~~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~~~   95 (262)
                      +.+.+.|....  .++ +|||+|||+|.+|..+++.+.+|+|+|+|+.|++.+++.   .+++++.+|      +..+++
T Consensus        33 ~~i~~~Iv~~~~~~~~-~VLEIG~G~G~lt~~L~~~~~~V~avEid~~~~~~l~~~~~~~~v~vi~~D------~l~~~~  105 (271)
T 3fut_A           33 EAHLRRIVEAARPFTG-PVFEVGPGLGALTRALLEAGAEVTAIEKDLRLRPVLEETLSGLPVRLVFQD------ALLYPW  105 (271)
T ss_dssp             HHHHHHHHHHHCCCCS-CEEEECCTTSHHHHHHHHTTCCEEEEESCGGGHHHHHHHTTTSSEEEEESC------GGGSCG
T ss_pred             HHHHHHHHHhcCCCCC-eEEEEeCchHHHHHHHHHcCCEEEEEECCHHHHHHHHHhcCCCCEEEEECC------hhhCCh
Confidence            45566666653  456 999999999999999999999999999999999999863   468888876      444333


Q ss_pred             CC-CceeeEEEccccccC
Q 037961           96 TQ-SSVDLVTIASALHWF  112 (262)
Q Consensus        96 ~~-~~~D~V~~~~~~~~~  112 (262)
                      ++ ..+|.|+++...+..
T Consensus       106 ~~~~~~~~iv~NlPy~is  123 (271)
T 3fut_A          106 EEVPQGSLLVANLPYHIA  123 (271)
T ss_dssp             GGSCTTEEEEEEECSSCC
T ss_pred             hhccCccEEEecCccccc
Confidence            32 268999998876653

>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45

Probab=98.96  E-value=2.2e-09  Score=96.58  Aligned_cols=110  Identities=13%  Similarity=0.111  Sum_probs=83.1

Q ss_pred             hHHHHHHHHhhCC--CCCeEEEEcCcccHhHHHHHhh---------------CCeEEEEcCCHHHHHHHhcC------C-
Q 037961           20 PKELFKLIASKTP--KRNLAWDVGTRSGQAAASLAQI---------------YQHVIATDTSPKQLKFAIKL------P-   75 (262)
Q Consensus        20 p~~~~~~l~~~~~--~~~~vlDvGcG~G~~~~~l~~~---------------~~~v~~vD~s~~~~~~a~~~------~-   75 (262)
                      |..+.+.+.....  ++.+|||.|||+|.++..+++.               ..+++|+|+++.+++.|+.+      . 
T Consensus       156 P~~v~~~mv~~l~~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~~  235 (445)
T 2okc_A          156 PRPLIQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGT  235 (445)
T ss_dssp             CHHHHHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCS
T ss_pred             cHHHHHHHHHHhCCCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCCc
Confidence            7888888777653  4568999999999999888764               36799999999999988742      1 


Q ss_pred             -CceEEeCCCCchhhhhhccCCCCceeeEEEccccccC---Ch---------------hHHHHHHHHhhcCCCeEEEEEe
Q 037961           76 -NIRYQLTPTMSITELEQNVATQSSVDLVTIASALHWF---DL---------------PQFYKQVKWVLKKPSGVIAAWT  136 (262)
Q Consensus        76 -~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~~~~---d~---------------~~~l~~~~r~Lk~pgG~l~i~~  136 (262)
                       ++.+..+|.      ...+ ...+||+|+++..++..   +.               ..+++.+.++|| |||++++..
T Consensus       236 ~~~~i~~gD~------l~~~-~~~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk-~gG~~a~V~  307 (445)
T 2okc_A          236 DRSPIVCEDS------LEKE-PSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLK-TGGRAAVVL  307 (445)
T ss_dssp             SCCSEEECCT------TTSC-CSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEE-EEEEEEEEE
T ss_pred             CCCCEeeCCC------CCCc-ccCCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhc-cCCEEEEEE
Confidence             566777662      1222 23489999999887643   21               268999999999 999999855


Q ss_pred             c
Q 037961          137 Y  137 (262)
Q Consensus       137 ~  137 (262)
                      .
T Consensus       308 p  308 (445)
T 2okc_A          308 P  308 (445)
T ss_dssp             E
T ss_pred             C
Confidence            3

>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*

Probab=98.92  E-value=1.8e-09  Score=89.62  Aligned_cols=111  Identities=10%  Similarity=-0.077  Sum_probs=73.7

Q ss_pred             HHHHHHHHhh-CCCCCeEEEEcCcccHhHHHHHhh-C-CeEEEEcCCHHHHHHHhcC----CCceEEeCCCCchhhhhhc
Q 037961           21 KELFKLIASK-TPKRNLAWDVGTRSGQAAASLAQI-Y-QHVIATDTSPKQLKFAIKL----PNIRYQLTPTMSITELEQN   93 (262)
Q Consensus        21 ~~~~~~l~~~-~~~~~~vlDvGcG~G~~~~~l~~~-~-~~v~~vD~s~~~~~~a~~~----~~~~~~~~~~~~~~~~~~~   93 (262)
                      -+|.+..... +.+..+|||||||+|.+++.++.. + .++.|+|++-++.......    .++.....+      ++..
T Consensus        61 ~KL~ei~ek~~l~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~~~pi~~~~~g~~ii~~~~~------~dv~  134 (277)
T 3evf_A           61 AKLRWFHERGYVKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHEKPMNVQSLGWNIITFKDK------TDIH  134 (277)
T ss_dssp             HHHHHHHHTTSSCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTCCCCCCCCBTTGGGEEEECS------CCTT
T ss_pred             HHHHHHHHhCCCCCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCcccccccCcCCCCeEEEecc------ceeh
Confidence            3444444442 357789999999999999988765 3 4788999985541111111    133434332      2223


Q ss_pred             cCCCCceeeEEEccccc----cCChhH---HHHHHHHhhcCCC-eEEEEEecC
Q 037961           94 VATQSSVDLVTIASALH----WFDLPQ---FYKQVKWVLKKPS-GVIAAWTYT  138 (262)
Q Consensus        94 ~~~~~~~D~V~~~~~~~----~~d~~~---~l~~~~r~Lk~pg-G~l~i~~~~  138 (262)
                      .+++++||+|+|..+.+    |.|...   +++.+.++|+ || |.|++=.+.
T Consensus       135 ~l~~~~~DlVlsD~apnsG~~~~D~~rs~~LL~~a~~~Lk-pG~G~FV~KVf~  186 (277)
T 3evf_A          135 RLEPVKCDTLLCDIGESSSSSVTEGERTVRVLDTVEKWLA-CGVDNFCVKVLA  186 (277)
T ss_dssp             TSCCCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHT-TCCSEEEEEESC
T ss_pred             hcCCCCccEEEecCccCcCchHHHHHHHHHHHHHHHHHhC-CCCCeEEEEecC
Confidence            45678899999988777    665444   4688899999 99 999984444

>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}

Probab=98.91  E-value=8.3e-09  Score=91.26  Aligned_cols=111  Identities=14%  Similarity=0.128  Sum_probs=81.1

Q ss_pred             hHHHHHHHHhhC--CCCCeEEEEcCcccHhHHHHHhhC----------------------------------------Ce
Q 037961           20 PKELFKLIASKT--PKRNLAWDVGTRSGQAAASLAQIY----------------------------------------QH   57 (262)
Q Consensus        20 p~~~~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~----------------------------------------~~   57 (262)
                      .+.+...++...  .++..+||.+||+|.++..++..+                                        .+
T Consensus       186 ~e~lAa~ll~l~~~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~  265 (393)
T 3k0b_A          186 KETMAAALVLLTSWHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLN  265 (393)
T ss_dssp             CHHHHHHHHHHSCCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCC
T ss_pred             cHHHHHHHHHHhCCCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCce
Confidence            456666666554  366789999999999998877643                                        34


Q ss_pred             EEEEcCCHHHHHHHhcC-------CCceEEeCCCCchhhhhhccCCCCceeeEEEcccccc-C----ChhHHHHHHHHhh
Q 037961           58 VIATDTSPKQLKFAIKL-------PNIRYQLTPTMSITELEQNVATQSSVDLVTIASALHW-F----DLPQFYKQVKWVL  125 (262)
Q Consensus        58 v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~~~-~----d~~~~l~~~~r~L  125 (262)
                      |+|+|+|+.|++.|+++       ..+.+.++|      +.+++. ..+||+|+++..+.- +    +...+++++.++|
T Consensus       266 V~GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D------~~~~~~-~~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~~l  338 (393)
T 3k0b_A          266 IIGGDIDARLIEIAKQNAVEAGLGDLITFRQLQ------VADFQT-EDEYGVVVANPPYGERLEDEEAVRQLYREMGIVY  338 (393)
T ss_dssp             EEEEESCHHHHHHHHHHHHHTTCTTCSEEEECC------GGGCCC-CCCSCEEEECCCCCCSHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEECCHHHHHHHHHHHHHcCCCCceEEEECC------hHhCCC-CCCCCEEEECCCCccccCCchhHHHHHHHHHHHH
Confidence            99999999999999863       247788765      555543 358999999977642 2    2344677777888


Q ss_pred             cCC--CeEEEEEecC
Q 037961          126 KKP--SGVIAAWTYT  138 (262)
Q Consensus       126 k~p--gG~l~i~~~~  138 (262)
                      | +  ||.+++.+..
T Consensus       339 k-~~~g~~~~iit~~  352 (393)
T 3k0b_A          339 K-RMPTWSVYVLTSY  352 (393)
T ss_dssp             H-TCTTCEEEEEECC
T ss_pred             h-cCCCCEEEEEECC
Confidence            7 6  9988886643

>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}

Probab=98.90  E-value=6.5e-09  Score=91.76  Aligned_cols=111  Identities=14%  Similarity=0.080  Sum_probs=82.5

Q ss_pred             hHHHHHHHHhhC--CCCCeEEEEcCcccHhHHHHHhhC----------------------------------------Ce
Q 037961           20 PKELFKLIASKT--PKRNLAWDVGTRSGQAAASLAQIY----------------------------------------QH   57 (262)
Q Consensus        20 p~~~~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~----------------------------------------~~   57 (262)
                      .+.+...|+...  .++..+||.+||+|.++..++..+                                        .+
T Consensus       180 ~e~lAa~ll~~~~~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~  259 (385)
T 3ldu_A          180 RETLAAGLIYLTPWKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFK  259 (385)
T ss_dssp             CHHHHHHHHHTSCCCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCC
T ss_pred             cHHHHHHHHHhhCCCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCce
Confidence            456666666655  366889999999999999887653                                        46


Q ss_pred             EEEEcCCHHHHHHHhcC-------CCceEEeCCCCchhhhhhccCCCCceeeEEEccccccC-----ChhHHHHHHHHhh
Q 037961           58 VIATDTSPKQLKFAIKL-------PNIRYQLTPTMSITELEQNVATQSSVDLVTIASALHWF-----DLPQFYKQVKWVL  125 (262)
Q Consensus        58 v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~~~~-----d~~~~l~~~~r~L  125 (262)
                      |+|+|+++.|++.|+++       ..+.+.++|      +.+++. +.+||+|+++..+.--     +...+++++.++|
T Consensus       260 V~GvDid~~ai~~Ar~Na~~~gl~~~i~~~~~D------~~~l~~-~~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~l  332 (385)
T 3ldu_A          260 IYGYDIDEESIDIARENAEIAGVDEYIEFNVGD------ATQFKS-EDEFGFIITNPPYGERLEDKDSVKQLYKELGYAF  332 (385)
T ss_dssp             EEEEESCHHHHHHHHHHHHHHTCGGGEEEEECC------GGGCCC-SCBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEECCHHHHHHHHHHHHHcCCCCceEEEECC------hhhcCc-CCCCcEEEECCCCcCccCCHHHHHHHHHHHHHHH
Confidence            99999999999999863       257777765      445543 4589999999887522     3445788888888


Q ss_pred             cCC--CeEEEEEecC
Q 037961          126 KKP--SGVIAAWTYT  138 (262)
Q Consensus       126 k~p--gG~l~i~~~~  138 (262)
                      | +  ||.+.+.+..
T Consensus       333 k-~~~g~~~~iit~~  346 (385)
T 3ldu_A          333 R-KLKNWSYYLITSY  346 (385)
T ss_dssp             H-TSBSCEEEEEESC
T ss_pred             h-hCCCCEEEEEECC
Confidence            8 6  8888886543

>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}

Probab=98.89  E-value=1.4e-09  Score=90.91  Aligned_cols=75  Identities=16%  Similarity=0.201  Sum_probs=57.9

Q ss_pred             CCCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCH-------HHHHHHhcC-------CCceEEeCCCCchhhhhhc-c-C
Q 037961           32 PKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSP-------KQLKFAIKL-------PNIRYQLTPTMSITELEQN-V-A   95 (262)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~-------~~~~~a~~~-------~~~~~~~~~~~~~~~~~~~-~-~   95 (262)
                      +++.+|||+|||+|..+..++..+.+|+++|+|+       .+++.|+++       .+++++.+|      +.+. + +
T Consensus        82 ~~~~~VLDlgcG~G~~a~~lA~~g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d------~~~~l~~~  155 (258)
T 2r6z_A           82 TAHPTVWDATAGLGRDSFVLASLGLTVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGN------AAEQMPAL  155 (258)
T ss_dssp             GGCCCEEETTCTTCHHHHHHHHTTCCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESC------HHHHHHHH
T ss_pred             CCcCeEEEeeCccCHHHHHHHHhCCEEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECC------HHHHHHhh
Confidence            3567899999999999999999999999999999       999988754       348888876      2221 1 2


Q ss_pred             CC--CceeeEEEccccccC
Q 037961           96 TQ--SSVDLVTIASALHWF  112 (262)
Q Consensus        96 ~~--~~~D~V~~~~~~~~~  112 (262)
                      ++  ++||+|+++..+++.
T Consensus       156 ~~~~~~fD~V~~dP~~~~~  174 (258)
T 2r6z_A          156 VKTQGKPDIVYLDPMYPER  174 (258)
T ss_dssp             HHHHCCCSEEEECCCC---
T ss_pred             hccCCCccEEEECCCCCCc
Confidence            33  689999998877664

>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35

Probab=98.87  E-value=7.5e-09  Score=90.02  Aligned_cols=102  Identities=14%  Similarity=0.199  Sum_probs=74.1

Q ss_pred             CCCCeEEEEcCcccHhHHHHHhh------------C------CeEEEEcCCHHHHHHHhcC-CC------ceEEeCCCCc
Q 037961           32 PKRNLAWDVGTRSGQAAASLAQI------------Y------QHVIATDTSPKQLKFAIKL-PN------IRYQLTPTMS   86 (262)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~------------~------~~v~~vD~s~~~~~~a~~~-~~------~~~~~~~~~~   86 (262)
                      +...+|+|+||++|..|..+...            +      .+|+..|+.......+-+. +.      -.|..+.   
T Consensus        50 ~~~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gv---  126 (359)
T 1m6e_X           50 TTRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGV---  126 (359)
T ss_dssp             SSEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEE---
T ss_pred             CCceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEec---
Confidence            34467899999999888765432            1      3688999999998877653 32      2333332   


Q ss_pred             hhhhhhccCCCCceeeEEEccccccC-ChhH---------------------------------HHHHHHHhhcCCCeEE
Q 037961           87 ITELEQNVATQSSVDLVTIASALHWF-DLPQ---------------------------------FYKQVKWVLKKPSGVI  132 (262)
Q Consensus        87 ~~~~~~~~~~~~~~D~V~~~~~~~~~-d~~~---------------------------------~l~~~~r~Lk~pgG~l  132 (262)
                      -+.+....++++++|+|+++.++||+ +.+.                                 +|+..++.|+ |||.+
T Consensus       127 pgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~-pGG~m  205 (359)
T 1m6e_X          127 PGSFYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVV-PGGRM  205 (359)
T ss_dssp             ESCSSSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBC-TTCEE
T ss_pred             chhhhhccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCceE
Confidence            13355566899999999999999999 4221                                 2778899999 99999


Q ss_pred             EEEec
Q 037961          133 AAWTY  137 (262)
Q Consensus       133 ~i~~~  137 (262)
                      ++...
T Consensus       206 vl~~~  210 (359)
T 1m6e_X          206 VLTIL  210 (359)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            98444

>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}

Probab=98.87  E-value=2.2e-08  Score=84.56  Aligned_cols=114  Identities=12%  Similarity=0.186  Sum_probs=84.9

Q ss_pred             ChHHHHHHHHhhCCCCCeEEEEcCcccHhHHHHHhh--CCeEEEEcCCHHHHHHHhcC-----------CCceEEeCCCC
Q 037961           19 YPKELFKLIASKTPKRNLAWDVGTRSGQAAASLAQI--YQHVIATDTSPKQLKFAIKL-----------PNIRYQLTPTM   85 (262)
Q Consensus        19 yp~~~~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~-----------~~~~~~~~~~~   85 (262)
                      |.+.+...-+...+...+||=||-|.|..++.++++  ..+|+.||+++.+++.+++.           +++++..+|..
T Consensus        69 YhE~l~h~~l~~~p~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~  148 (294)
T 3o4f_A           69 YHEMMTHVPLLAHGHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGV  148 (294)
T ss_dssp             HHHHHHHHHHHHSSCCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTT
T ss_pred             HHHHHHHHHHhhCCCCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHH
Confidence            444455444445677889999999999999999986  46899999999999998752           67888888721


Q ss_pred             chhhhhhccCCCCceeeEEEccccc-----cCChhHHHHHHHHhhcCCCeEEEEEecC
Q 037961           86 SITELEQNVATQSSVDLVTIASALH-----WFDLPQFYKQVKWVLKKPSGVIAAWTYT  138 (262)
Q Consensus        86 ~~~~~~~~~~~~~~~D~V~~~~~~~-----~~d~~~~l~~~~r~Lk~pgG~l~i~~~~  138 (262)
                           +.+.-..++||+|+....=.     .+-...+++.+.+.|+ |||+++.+.-+
T Consensus       149 -----~~l~~~~~~yDvIi~D~~dp~~~~~~L~t~eFy~~~~~~L~-p~Gv~v~q~~s  200 (294)
T 3o4f_A          149 -----NFVNQTSQTFDVIISDCTDPIGPGESLFTSAFYEGCKRCLN-PGGIFVAQNGV  200 (294)
T ss_dssp             -----TTTSCSSCCEEEEEESCCCCCCTTCCSSCCHHHHHHHHTEE-EEEEEEEEEEE
T ss_pred             -----HHHhhccccCCEEEEeCCCcCCCchhhcCHHHHHHHHHHhC-CCCEEEEecCC
Confidence                 11223467899999754321     1224569999999999 99999996543

>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*

Probab=98.86  E-value=6.4e-09  Score=91.18  Aligned_cols=101  Identities=15%  Similarity=0.081  Sum_probs=71.7

Q ss_pred             CCeEEEEcCcccHhHHHHHhh-------------------CCeEEEEcCC-----------HHHHHHHhcC----CCceE
Q 037961           34 RNLAWDVGTRSGQAAASLAQI-------------------YQHVIATDTS-----------PKQLKFAIKL----PNIRY   79 (262)
Q Consensus        34 ~~~vlDvGcG~G~~~~~l~~~-------------------~~~v~~vD~s-----------~~~~~~a~~~----~~~~~   79 (262)
                      ..+|+|+||++|..|..+...                   -.+|+..|+.           +.+.+.+++.    .+--|
T Consensus        53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~g~~~~~~f  132 (384)
T 2efj_A           53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKENGRKIGSCL  132 (384)
T ss_dssp             EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHTCCCTTSEE
T ss_pred             ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhccCCCCceE
Confidence            578999999999999887643                   1357788888           6666544331    12344


Q ss_pred             EeCCCCchhhhhhccCCCCceeeEEEccccccC-ChhHH---------------------------------------HH
Q 037961           80 QLTPTMSITELEQNVATQSSVDLVTIASALHWF-DLPQF---------------------------------------YK  119 (262)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~~~~-d~~~~---------------------------------------l~  119 (262)
                      ..+..   +.+....++++++|+|+++.++||+ +.+..                                       |+
T Consensus       133 ~~gvp---gSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~FL~  209 (384)
T 2efj_A          133 IGAMP---GSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFLR  209 (384)
T ss_dssp             EEECC---SCTTSCCSCTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEecc---hhhhhccCCCCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            44431   3455566899999999999999999 54322                                       34


Q ss_pred             HHHHhhcCCCeEEEEEecC
Q 037961          120 QVKWVLKKPSGVIAAWTYT  138 (262)
Q Consensus       120 ~~~r~Lk~pgG~l~i~~~~  138 (262)
                      ..++.|+ |||++++...+
T Consensus       210 ~Ra~eL~-pGG~mvl~~~g  227 (384)
T 2efj_A          210 IHSEELI-SRGRMLLTFIC  227 (384)
T ss_dssp             HHHHHEE-EEEEEEEEEEC
T ss_pred             HHHHHhc-cCCeEEEEEec
Confidence            4489999 99999985554

>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}

Probab=98.86  E-value=1.7e-08  Score=88.94  Aligned_cols=111  Identities=12%  Similarity=0.030  Sum_probs=81.6

Q ss_pred             hHHHHHHHHhhC--CCCCeEEEEcCcccHhHHHHHhhC----------------------------------------Ce
Q 037961           20 PKELFKLIASKT--PKRNLAWDVGTRSGQAAASLAQIY----------------------------------------QH   57 (262)
Q Consensus        20 p~~~~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~----------------------------------------~~   57 (262)
                      .+.+...|+...  .++..+||.+||+|.++...+..+                                        .+
T Consensus       179 ~e~LAaall~l~~~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~  258 (384)
T 3ldg_A          179 KENMAAAIILLSNWFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLD  258 (384)
T ss_dssp             CHHHHHHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCC
T ss_pred             cHHHHHHHHHHhCCCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCce
Confidence            356666665554  467889999999999998877643                                        34


Q ss_pred             EEEEcCCHHHHHHHhcC-------CCceEEeCCCCchhhhhhccCCCCceeeEEEcccccc-C----ChhHHHHHHHHhh
Q 037961           58 VIATDTSPKQLKFAIKL-------PNIRYQLTPTMSITELEQNVATQSSVDLVTIASALHW-F----DLPQFYKQVKWVL  125 (262)
Q Consensus        58 v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~~~-~----d~~~~l~~~~r~L  125 (262)
                      |+|+|+|+.|++.|+++       ..+.+.++|      +.+++.+ .+||+|+++..++- +    +...+++++.+.|
T Consensus       259 v~GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D------~~~l~~~-~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~l  331 (384)
T 3ldg_A          259 ISGFDFDGRMVEIARKNAREVGLEDVVKLKQMR------LQDFKTN-KINGVLISNPPYGERLLDDKAVDILYNEMGETF  331 (384)
T ss_dssp             EEEEESCHHHHHHHHHHHHHTTCTTTEEEEECC------GGGCCCC-CCSCEEEECCCCTTTTSCHHHHHHHHHHHHHHH
T ss_pred             EEEEECCHHHHHHHHHHHHHcCCCCceEEEECC------hHHCCcc-CCcCEEEECCchhhccCCHHHHHHHHHHHHHHH
Confidence            99999999999999863       247777765      5555433 48999999977652 2    2445777888888


Q ss_pred             cCC--CeEEEEEecC
Q 037961          126 KKP--SGVIAAWTYT  138 (262)
Q Consensus       126 k~p--gG~l~i~~~~  138 (262)
                      | +  ||.+++.+..
T Consensus       332 k-~~~g~~~~iit~~  345 (384)
T 3ldg_A          332 A-PLKTWSQFILTND  345 (384)
T ss_dssp             T-TCTTSEEEEEESC
T ss_pred             h-hCCCcEEEEEECC
Confidence            8 6  9998886653

>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A

Probab=98.85  E-value=4.3e-09  Score=97.83  Aligned_cols=120  Identities=11%  Similarity=0.108  Sum_probs=82.8

Q ss_pred             hhhHHHHHHHHhhCCCChHHHHHHHHhhCC---CCCeEEEEcCcccHhHHHHHh----hC-----------CeEEEEcCC
Q 037961            3 ELFIKQANLYAVARPNYPKELFKLIASKTP---KRNLAWDVGTRSGQAAASLAQ----IY-----------QHVIATDTS   64 (262)
Q Consensus         3 ~~F~~~a~~Y~~~rp~yp~~~~~~l~~~~~---~~~~vlDvGcG~G~~~~~l~~----~~-----------~~v~~vD~s   64 (262)
                      +.|.++.-.|+++|    ..+...+....+   ...+|||||||+|.++...+.    .+           .+|+|||.|
T Consensus       380 e~fekD~vRy~~Y~----~AI~~al~d~~~~~~~~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEkn  455 (745)
T 3ua3_A          380 NTFEQDQIKYDVYG----EAVVGALKDLGADGRKTVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKN  455 (745)
T ss_dssp             HHHHHCHHHHHHHH----HHHHHHHHHHHTTCCSEEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECC
T ss_pred             HHHcCChhhHHHHH----HHHHHHHHHhhcccCCCcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCC
Confidence            67889999999875    555555544432   356899999999999754322    12           289999999


Q ss_pred             HHHHHHHhc-----C-CCceEEeCCCCchhhhhhccCC-----CCceeeEEEccccccCChh---HHHHHHHHhhcCCCe
Q 037961           65 PKQLKFAIK-----L-PNIRYQLTPTMSITELEQNVAT-----QSSVDLVTIASALHWFDLP---QFYKQVKWVLKKPSG  130 (262)
Q Consensus        65 ~~~~~~a~~-----~-~~~~~~~~~~~~~~~~~~~~~~-----~~~~D~V~~~~~~~~~d~~---~~l~~~~r~Lk~pgG  130 (262)
                      +.....++.     . ..|+++.++      .+++.++     .+++|+|++-..=...+-+   ..+..+.+.|| |||
T Consensus       456 p~A~~~l~~~~~Ng~~d~VtVI~gd------~eev~lp~~~~~~ekVDIIVSElmGsfl~nEL~pe~Ld~v~r~Lk-p~G  528 (745)
T 3ua3_A          456 PNAIVTLKYMNVRTWKRRVTIIESD------MRSLPGIAKDRGFEQPDIIVSELLGSFGDNELSPECLDGVTGFLK-PTT  528 (745)
T ss_dssp             HHHHHHHHHHHHHTTTTCSEEEESC------GGGHHHHHHHTTCCCCSEEEECCCBTTBGGGSHHHHHHTTGGGSC-TTC
T ss_pred             hHHHHHHHHHHhcCCCCeEEEEeCc------hhhcccccccCCCCcccEEEEeccccccchhccHHHHHHHHHhCC-CCc
Confidence            876654442     2 468888876      4444332     5789999986553322444   57777789999 999


Q ss_pred             EEE
Q 037961          131 VIA  133 (262)
Q Consensus       131 ~l~  133 (262)
                      .++
T Consensus       529 i~i  531 (745)
T 3ua3_A          529 ISI  531 (745)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            876

>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A

Probab=98.83  E-value=4.2e-09  Score=87.62  Aligned_cols=83  Identities=11%  Similarity=0.003  Sum_probs=57.3

Q ss_pred             HHHHHHHHhhC--CCCCeEEEEcCcccHhHHHHHhhCCe--EEEEcCCHHHHHHHhcC----CCceEEeCC--CCchhhh
Q 037961           21 KELFKLIASKT--PKRNLAWDVGTRSGQAAASLAQIYQH--VIATDTSPKQLKFAIKL----PNIRYQLTP--TMSITEL   90 (262)
Q Consensus        21 ~~~~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~~~--v~~vD~s~~~~~~a~~~----~~~~~~~~~--~~~~~~~   90 (262)
                      +.+.+.+....  .++.+|||+|||+|.+|. +. .+.+  |+|+|+++.|++.+++.    ++++++.+|  .+...+.
T Consensus         7 ~~i~~~iv~~~~~~~~~~VLEIG~G~G~lt~-l~-~~~~~~v~avEid~~~~~~a~~~~~~~~~v~~i~~D~~~~~~~~~   84 (252)
T 1qyr_A            7 QFVIDSIVSAINPQKGQAMVEIGPGLAALTE-PV-GERLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTFNFGEL   84 (252)
T ss_dssp             HHHHHHHHHHHCCCTTCCEEEECCTTTTTHH-HH-HTTCSCEEEECCCHHHHHHHHTCTTTGGGEEEECSCGGGCCHHHH
T ss_pred             HHHHHHHHHhcCCCCcCEEEEECCCCcHHHH-hh-hCCCCeEEEEECCHHHHHHHHHHhccCCceEEEECchhhCCHHHh
Confidence            34455555443  467789999999999999 65 5677  99999999999999874    368888877  2222111


Q ss_pred             hhccCCCCceeeEEEccc
Q 037961           91 EQNVATQSSVDLVTIASA  108 (262)
Q Consensus        91 ~~~~~~~~~~D~V~~~~~  108 (262)
                      .+.   .+..|.|+++..
T Consensus        85 ~~~---~~~~~~vvsNlP   99 (252)
T 1qyr_A           85 AEK---MGQPLRVFGNLP   99 (252)
T ss_dssp             HHH---HTSCEEEEEECC
T ss_pred             hcc---cCCceEEEECCC
Confidence            000   123578888876

>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}

Probab=98.83  E-value=4.7e-09  Score=88.60  Aligned_cols=63  Identities=6%  Similarity=0.057  Sum_probs=53.0

Q ss_pred             HHHHHHHHhhC--CCCCeEEEEcCcccHhHHHHHhhCCe----EEEEcCCHHHHHHHhcC--CCceEEeCC
Q 037961           21 KELFKLIASKT--PKRNLAWDVGTRSGQAAASLAQIYQH----VIATDTSPKQLKFAIKL--PNIRYQLTP   83 (262)
Q Consensus        21 ~~~~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~~~----v~~vD~s~~~~~~a~~~--~~~~~~~~~   83 (262)
                      +.+.+.|....  .++.+|||||||+|.+|..|++.+.+    |+|+|+|+.|++.+++.  .+++++.+|
T Consensus        28 ~~i~~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~~~~v~~i~~D   98 (279)
T 3uzu_A           28 HGVIDAIVAAIRPERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRFGELLELHAGD   98 (279)
T ss_dssp             HHHHHHHHHHHCCCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHHGGGEEEEESC
T ss_pred             HHHHHHHHHhcCCCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhcCCCcEEEECC
Confidence            45566666654  46789999999999999999998777    99999999999999864  578888877

>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*

Probab=98.81  E-value=3.6e-08  Score=81.82  Aligned_cols=83  Identities=12%  Similarity=0.080  Sum_probs=61.7

Q ss_pred             HHHHHHHHhhCC--CCCeEEEEcCcccHhHHHHHhhC-CeEEEEcCCHHHHHHHhcC--CCceEEeCCCCchhhhhhccC
Q 037961           21 KELFKLIASKTP--KRNLAWDVGTRSGQAAASLAQIY-QHVIATDTSPKQLKFAIKL--PNIRYQLTPTMSITELEQNVA   95 (262)
Q Consensus        21 ~~~~~~l~~~~~--~~~~vlDvGcG~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~   95 (262)
                      +.+.+.+.+...  ++.+|||+|||+|.+|..+++.+ .+|+|+|+|+.|++.+++.  .+++++.+|      +..+++
T Consensus        17 ~~i~~~iv~~~~~~~~~~VLDiG~G~G~lt~~L~~~~~~~v~avEid~~~~~~~~~~~~~~v~~i~~D------~~~~~~   90 (249)
T 3ftd_A           17 EGVLKKIAEELNIEEGNTVVEVGGGTGNLTKVLLQHPLKKLYVIELDREMVENLKSIGDERLEVINED------ASKFPF   90 (249)
T ss_dssp             HHHHHHHHHHTTCCTTCEEEEEESCHHHHHHHHTTSCCSEEEEECCCHHHHHHHTTSCCTTEEEECSC------TTTCCG
T ss_pred             HHHHHHHHHhcCCCCcCEEEEEcCchHHHHHHHHHcCCCeEEEEECCHHHHHHHHhccCCCeEEEEcc------hhhCCh
Confidence            566777776653  67899999999999999999995 8999999999999999865  456777766      333333


Q ss_pred             CC--CceeeEEEccccc
Q 037961           96 TQ--SSVDLVTIASALH  110 (262)
Q Consensus        96 ~~--~~~D~V~~~~~~~  110 (262)
                      ++  +.+ .|+++...+
T Consensus        91 ~~~~~~~-~vv~NlPy~  106 (249)
T 3ftd_A           91 CSLGKEL-KVVGNLPYN  106 (249)
T ss_dssp             GGSCSSE-EEEEECCTT
T ss_pred             hHccCCc-EEEEECchh
Confidence            22  133 666666554

>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*

Probab=98.78  E-value=1.5e-08  Score=93.30  Aligned_cols=112  Identities=15%  Similarity=0.140  Sum_probs=82.2

Q ss_pred             hHHHHHHHHhhCC--CCCeEEEEcCcccHhHHHHHhh--------------------CCeEEEEcCCHHHHHHHhcC---
Q 037961           20 PKELFKLIASKTP--KRNLAWDVGTRSGQAAASLAQI--------------------YQHVIATDTSPKQLKFAIKL---   74 (262)
Q Consensus        20 p~~~~~~l~~~~~--~~~~vlDvGcG~G~~~~~l~~~--------------------~~~v~~vD~s~~~~~~a~~~---   74 (262)
                      |..+.+.+...+.  ++.+|+|.|||+|.++..++..                    ..+++|+|+++.+++.|+.+   
T Consensus       154 P~~iv~~mv~~l~p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l  233 (541)
T 2ar0_A          154 PRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLL  233 (541)
T ss_dssp             CHHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHhccCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHH
Confidence            6777777766553  4678999999999998887653                    13799999999999998742   


Q ss_pred             ---CC-----ceEEeCCCCchhhhhhccCCCCceeeEEEccccccC-Ch--------------hHHHHHHHHhhcCCCeE
Q 037961           75 ---PN-----IRYQLTPTMSITELEQNVATQSSVDLVTIASALHWF-DL--------------PQFYKQVKWVLKKPSGV  131 (262)
Q Consensus        75 ---~~-----~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~~~~-d~--------------~~~l~~~~r~Lk~pgG~  131 (262)
                         ..     ..+..+|.+..     .+...++||+|+++..+... ..              ..+++.+.+.|+ |||+
T Consensus       234 ~gi~~~~~~~~~I~~gDtL~~-----~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk-~gGr  307 (541)
T 2ar0_A          234 HDIEGNLDHGGAIRLGNTLGS-----DGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLH-PGGR  307 (541)
T ss_dssp             TTCCCBGGGTBSEEESCTTSH-----HHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEE-EEEE
T ss_pred             hCCCccccccCCeEeCCCccc-----ccccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhC-CCCE
Confidence               22     56777763221     11235689999999887643 21              258999999999 9999


Q ss_pred             EEEEec
Q 037961          132 IAAWTY  137 (262)
Q Consensus       132 l~i~~~  137 (262)
                      +++...
T Consensus       308 ~a~V~p  313 (541)
T 2ar0_A          308 AAVVVP  313 (541)
T ss_dssp             EEEEEE
T ss_pred             EEEEec
Confidence            998543

>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A

Probab=98.74  E-value=1e-08  Score=85.47  Aligned_cols=89  Identities=11%  Similarity=-0.006  Sum_probs=63.2

Q ss_pred             CeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHH-------HHhcC--------CCceEEeCCCCchhhhhh-ccCCCC
Q 037961           35 NLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLK-------FAIKL--------PNIRYQLTPTMSITELEQ-NVATQS   98 (262)
Q Consensus        35 ~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~-------~a~~~--------~~~~~~~~~~~~~~~~~~-~~~~~~   98 (262)
                      .+|||+|||+|..+..++.++++|+++|+++.+++       .++++        .+++++.+|      +.+ ++....
T Consensus        90 ~~VLDl~~G~G~dal~lA~~g~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D------~~~~L~~~~~  163 (258)
T 2oyr_A           90 PDVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHAS------SLTALTDITP  163 (258)
T ss_dssp             CCEEETTCTTCHHHHHHHHHTCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESC------HHHHSTTCSS
T ss_pred             CEEEEcCCcCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECC------HHHHHHhCcc
Confidence            78999999999999999999999999999997643       33321        246777766      322 221123


Q ss_pred             ceeeEEEccccccCChhHHHHHHHHhhcCCCe
Q 037961           99 SVDLVTIASALHWFDLPQFYKQVKWVLKKPSG  130 (262)
Q Consensus        99 ~~D~V~~~~~~~~~d~~~~l~~~~r~Lk~pgG  130 (262)
                      +||+|++..++++-....++++..++|+ +.+
T Consensus       164 ~fDvV~lDP~y~~~~~saavkk~~~~lr-~l~  194 (258)
T 2oyr_A          164 RPQVVYLDPMFPHKQKSALVKKEMRVFQ-SLV  194 (258)
T ss_dssp             CCSEEEECCCCCCCCC-----HHHHHHH-HHS
T ss_pred             cCCEEEEcCCCCCcccchHHHHHHHHHH-Hhh
Confidence            6999999998877654567888889998 655

>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*

Probab=98.71  E-value=2.5e-08  Score=85.01  Aligned_cols=87  Identities=11%  Similarity=0.163  Sum_probs=63.8

Q ss_pred             hCCCChHHHHHHHHhhCCCCCeEEEEcCcccHhHHHHHhh--CCeEEEEcCCHHHHHHHhcC-----CCceEEeCCCCch
Q 037961           15 ARPNYPKELFKLIASKTPKRNLAWDVGTRSGQAAASLAQI--YQHVIATDTSPKQLKFAIKL-----PNIRYQLTPTMSI   87 (262)
Q Consensus        15 ~rp~yp~~~~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~-----~~~~~~~~~~~~~   87 (262)
                      +.|...+++++.+.  ..++.+|||+|||+|..+..+++.  +.+|+|+|+|+.|++.|+++     .++.++.++    
T Consensus        10 h~pvLl~e~l~~L~--~~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g~~v~~v~~d----   83 (301)
T 1m6y_A           10 HIPVMVREVIEFLK--PEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVS----   83 (301)
T ss_dssp             CCCTTHHHHHHHHC--CCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECC----
T ss_pred             ccHHHHHHHHHhcC--CCCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECC----
Confidence            44555555555552  246789999999999999999987  47999999999999999853     468888876    


Q ss_pred             hhhhhcc-----CCCCceeeEEEcccc
Q 037961           88 TELEQNV-----ATQSSVDLVTIASAL  109 (262)
Q Consensus        88 ~~~~~~~-----~~~~~~D~V~~~~~~  109 (262)
                        +.+++     ....+||.|++...+
T Consensus        84 --~~~l~~~l~~~g~~~~D~Vl~D~gv  108 (301)
T 1m6y_A           84 --YREADFLLKTLGIEKVDGILMDLGV  108 (301)
T ss_dssp             --GGGHHHHHHHTTCSCEEEEEEECSC
T ss_pred             --HHHHHHHHHhcCCCCCCEEEEcCcc
Confidence              22221     112579999986543

>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*

Probab=98.70  E-value=7.8e-09  Score=95.98  Aligned_cols=118  Identities=15%  Similarity=0.249  Sum_probs=80.4

Q ss_pred             hhhHHHHHHHHhhCCCChHHHHHHHHhhC------CCCCeEEEEcCcccHhHHHHHh---h-CC--eEEEEcCCHHHHHH
Q 037961            3 ELFIKQANLYAVARPNYPKELFKLIASKT------PKRNLAWDVGTRSGQAAASLAQ---I-YQ--HVIATDTSPKQLKF   70 (262)
Q Consensus         3 ~~F~~~a~~Y~~~rp~yp~~~~~~l~~~~------~~~~~vlDvGcG~G~~~~~l~~---~-~~--~v~~vD~s~~~~~~   70 (262)
                      +.|+++.-.|++++    +.+...|....      .+..+|||||||+|.+....++   . +.  +|+|||-|+ |...
T Consensus       325 evFEkD~vKy~~Ye----~AI~~Al~d~~~~~~~~~~~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp-~A~~  399 (637)
T 4gqb_A          325 EVFEKDPIKYSQYQ----QAIYKCLLDRVPEEEKDTNVQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNP-NAVV  399 (637)
T ss_dssp             HHHTTCHHHHHHHH----HHHHHHHHHHSCGGGTTTCEEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCH-HHHH
T ss_pred             hhhcCChhhHHHHH----HHHHHHHHHhhhhccccCCCcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCH-HHHH
Confidence            67889999999874    55555555443      1345799999999999655443   3 22  689999997 5555


Q ss_pred             HhcC-------CCceEEeCCCCchhhhhhccCCCCceeeEEEccccccCC---hhHHHHHHHHhhcCCCeEEE
Q 037961           71 AIKL-------PNIRYQLTPTMSITELEQNVATQSSVDLVTIASALHWFD---LPQFYKQVKWVLKKPSGVIA  133 (262)
Q Consensus        71 a~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~~~~d---~~~~l~~~~r~Lk~pgG~l~  133 (262)
                      +++.       ..|+++.++      .+++.+| .++|+|++-..=...+   ...++....|.|| |||.++
T Consensus       400 a~~~v~~N~~~dkVtVI~gd------~eev~LP-EKVDIIVSEwMG~fLl~E~mlevL~Ardr~LK-PgGimi  464 (637)
T 4gqb_A          400 TLENWQFEEWGSQVTVVSSD------MREWVAP-EKADIIVSELLGSFADNELSPECLDGAQHFLK-DDGVSI  464 (637)
T ss_dssp             HHHHHHHHTTGGGEEEEESC------TTTCCCS-SCEEEEECCCCBTTBGGGCHHHHHHHHGGGEE-EEEEEE
T ss_pred             HHHHHHhccCCCeEEEEeCc------ceeccCC-cccCEEEEEcCcccccccCCHHHHHHHHHhcC-CCcEEc
Confidence            5542       568888876      5555544 6899999843222112   2346667788999 999875

>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*

Probab=98.69  E-value=1e-07  Score=82.72  Aligned_cols=88  Identities=11%  Similarity=0.017  Sum_probs=69.1

Q ss_pred             CCCCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhcCCCceEEeCCCCchhhhhhccCCCCceeeEEEccccc
Q 037961           31 TPKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKLPNIRYQLTPTMSITELEQNVATQSSVDLVTIASALH  110 (262)
Q Consensus        31 ~~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~~  110 (262)
                      +.++.+|||+||++|.+|..+++++.+|+|||+. .|-......+++.++.+|      +.....+.++||+|+|..+.+
T Consensus       209 l~~G~~vlDLGAaPGGWT~~l~~rg~~V~aVD~~-~l~~~l~~~~~V~~~~~d------~~~~~~~~~~~D~vvsDm~~~  281 (375)
T 4auk_A          209 LANGMWAVDLGACPGGWTYQLVKRNMWVYSVDNG-PMAQSLMDTGQVTWLRED------GFKFRPTRSNISWMVCDMVEK  281 (375)
T ss_dssp             SCTTCEEEEETCTTCHHHHHHHHTTCEEEEECSS-CCCHHHHTTTCEEEECSC------TTTCCCCSSCEEEEEECCSSC
T ss_pred             CCCCCEEEEeCcCCCHHHHHHHHCCCEEEEEEhh-hcChhhccCCCeEEEeCc------cccccCCCCCcCEEEEcCCCC
Confidence            4689999999999999999999999999999987 455566677899999876      333334567899999987764


Q ss_pred             cCChhHHHHHHHHhhcCCC
Q 037961          111 WFDLPQFYKQVKWVLKKPS  129 (262)
Q Consensus       111 ~~d~~~~l~~~~r~Lk~pg  129 (262)
                         +...+..+.+.|. .|
T Consensus       282 ---p~~~~~l~~~wl~-~~  296 (375)
T 4auk_A          282 ---PAKVAALMAQWLV-NG  296 (375)
T ss_dssp             ---HHHHHHHHHHHHH-TT
T ss_pred             ---hHHhHHHHHHHHh-cc
Confidence               4566666666666 44

>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}

Probab=98.69  E-value=3.1e-08  Score=86.67  Aligned_cols=101  Identities=17%  Similarity=0.259  Sum_probs=68.6

Q ss_pred             CCeEEEEcCcccHhHHHHHh--------h---------CCeEEEEcCCHHHHHHHhc-CCC-----------------ce
Q 037961           34 RNLAWDVGTRSGQAAASLAQ--------I---------YQHVIATDTSPKQLKFAIK-LPN-----------------IR   78 (262)
Q Consensus        34 ~~~vlDvGcG~G~~~~~l~~--------~---------~~~v~~vD~s~~~~~~a~~-~~~-----------------~~   78 (262)
                      ..+|+|+|||+|..|..+..        +         -.+|...|+....-...-+ ++.                 -.
T Consensus        53 ~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~~  132 (374)
T 3b5i_A           53 PFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRSY  132 (374)
T ss_dssp             CEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBCS
T ss_pred             ceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCce
Confidence            47899999999999988732        1         2367788887776543321 111                 01


Q ss_pred             EEeCCCCchhhhhhccCCCCceeeEEEccccccC-ChhH--------------------------------------HHH
Q 037961           79 YQLTPTMSITELEQNVATQSSVDLVTIASALHWF-DLPQ--------------------------------------FYK  119 (262)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~~~~-d~~~--------------------------------------~l~  119 (262)
                      +..+.   -+.+..-.+|+++||+|+++.++||+ +.+.                                      +++
T Consensus       133 f~~gv---pgSFy~rlfP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~  209 (374)
T 3b5i_A          133 FVAGV---PGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLR  209 (374)
T ss_dssp             EEEEE---ESCTTSCCSCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEec---ChhhhcccCCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            22211   12344455789999999999999999 4332                                      477


Q ss_pred             HHHHhhcCCCeEEEEEecC
Q 037961          120 QVKWVLKKPSGVIAAWTYT  138 (262)
Q Consensus       120 ~~~r~Lk~pgG~l~i~~~~  138 (262)
                      ..++.|+ |||.+++...+
T Consensus       210 ~ra~eL~-pGG~mvl~~~g  227 (374)
T 3b5i_A          210 ARAAEVK-RGGAMFLVCLG  227 (374)
T ss_dssp             HHHHHEE-EEEEEEEEEEE
T ss_pred             HHHHHhC-CCCEEEEEEec
Confidence            7899999 99999985443

>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*

Probab=98.68  E-value=4.3e-08  Score=86.39  Aligned_cols=94  Identities=16%  Similarity=0.106  Sum_probs=72.3

Q ss_pred             CCCeEEEEcCcccHhHHHHHhh--C-CeEEEEcCCHHHHHHHhcC------CC--ceEEeCCCCchhhhhhc-c-CCCCc
Q 037961           33 KRNLAWDVGTRSGQAAASLAQI--Y-QHVIATDTSPKQLKFAIKL------PN--IRYQLTPTMSITELEQN-V-ATQSS   99 (262)
Q Consensus        33 ~~~~vlDvGcG~G~~~~~l~~~--~-~~v~~vD~s~~~~~~a~~~------~~--~~~~~~~~~~~~~~~~~-~-~~~~~   99 (262)
                      ++.+|||++||+|.++..++..  + .+|+++|+++..++.++++      .+  +++..+|      +... . ...++
T Consensus        52 ~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~D------a~~~l~~~~~~~  125 (392)
T 3axs_A           52 RPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGME------ANFFLRKEWGFG  125 (392)
T ss_dssp             SCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSC------HHHHHHSCCSSC
T ss_pred             CCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCC------HHHHHHHhhCCC
Confidence            5678999999999999999985  4 5899999999999998863      23  6777765      2221 1 12457


Q ss_pred             eeeEEEccccccCChhHHHHHHHHhhcCCCeEEEEEe
Q 037961          100 VDLVTIASALHWFDLPQFYKQVKWVLKKPSGVIAAWT  136 (262)
Q Consensus       100 ~D~V~~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~  136 (262)
                      ||+|++..   .-.+..++..+.++|+ |||.|++..
T Consensus       126 fD~V~lDP---~g~~~~~l~~a~~~Lk-~gGll~~t~  158 (392)
T 3axs_A          126 FDYVDLDP---FGTPVPFIESVALSMK-RGGILSLTA  158 (392)
T ss_dssp             EEEEEECC---SSCCHHHHHHHHHHEE-EEEEEEEEE
T ss_pred             CcEEEECC---CcCHHHHHHHHHHHhC-CCCEEEEEe
Confidence            99999876   1234679999999999 999888744

>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*

Probab=98.66  E-value=1.2e-07  Score=83.48  Aligned_cols=94  Identities=11%  Similarity=0.114  Sum_probs=71.0

Q ss_pred             CCCeEEEEcCcccHhHHHHHhh-C-CeEEEEcCCHHHHHHHhcC---C---------------C---ceEEeCCCCchhh
Q 037961           33 KRNLAWDVGTRSGQAAASLAQI-Y-QHVIATDTSPKQLKFAIKL---P---------------N---IRYQLTPTMSITE   89 (262)
Q Consensus        33 ~~~~vlDvGcG~G~~~~~l~~~-~-~~v~~vD~s~~~~~~a~~~---~---------------~---~~~~~~~~~~~~~   89 (262)
                      ++.+|||+|||+|..+..++.. + .+|+++|+++.+++.++++   .               +   +++..+|      
T Consensus        47 ~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~D------  120 (378)
T 2dul_A           47 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDD------  120 (378)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESC------
T ss_pred             CCCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCc------
Confidence            6778999999999999999987 3 5899999999999998752   1               2   5566655      


Q ss_pred             hhhcc-CCCCceeeEEEccccccCChhHHHHHHHHhhcCCCeEEEEEe
Q 037961           90 LEQNV-ATQSSVDLVTIASALHWFDLPQFYKQVKWVLKKPSGVIAAWT  136 (262)
Q Consensus        90 ~~~~~-~~~~~~D~V~~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~  136 (262)
                      +..+. ...++||+|+...   ......++..+.+.|| |||.+++.+
T Consensus       121 a~~~~~~~~~~fD~I~lDP---~~~~~~~l~~a~~~lk-~gG~l~vt~  164 (378)
T 2dul_A          121 ANRLMAERHRYFHFIDLDP---FGSPMEFLDTALRSAK-RRGILGVTA  164 (378)
T ss_dssp             HHHHHHHSTTCEEEEEECC---SSCCHHHHHHHHHHEE-EEEEEEEEE
T ss_pred             HHHHHHhccCCCCEEEeCC---CCCHHHHHHHHHHhcC-CCCEEEEEe
Confidence            32221 1135799999653   1245789999999999 999887744

>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}

Probab=98.66  E-value=1.5e-07  Score=75.35  Aligned_cols=110  Identities=8%  Similarity=0.087  Sum_probs=76.2

Q ss_pred             CChHHHHHHHHhhCCCCCeEEEEcCcccHhHHHHHhh-CCeEEEEcCCHHHHHHHhcC---------CCceEEeCCCCch
Q 037961           18 NYPKELFKLIASKTPKRNLAWDVGTRSGQAAASLAQI-YQHVIATDTSPKQLKFAIKL---------PNIRYQLTPTMSI   87 (262)
Q Consensus        18 ~yp~~~~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~---------~~~~~~~~~~~~~   87 (262)
                      .++++..++|...+.+..+|||+||  |..|..+++. +.+|+.+|.++++.+.|++.         .++++..++....
T Consensus        15 ~v~~~~~~~L~~~l~~a~~VLEiGt--GySTl~lA~~~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~   92 (202)
T 3cvo_A           15 TMPPAEAEALRMAYEEAEVILEYGS--GGSTVVAAELPGKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGPT   92 (202)
T ss_dssp             CSCHHHHHHHHHHHHHCSEEEEESC--SHHHHHHHTSTTCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSSB
T ss_pred             cCCHHHHHHHHHHhhCCCEEEEECc--hHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchhh
Confidence            3556666666655567789999998  5788888875 68999999999999998852         2477887762110


Q ss_pred             ------------hhhhhc-----cC-CCCceeeEEEccccccCChhHHHHHHHHhhcCCCeEEEE
Q 037961           88 ------------TELEQN-----VA-TQSSVDLVTIASALHWFDLPQFYKQVKWVLKKPSGVIAA  134 (262)
Q Consensus        88 ------------~~~~~~-----~~-~~~~~D~V~~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i  134 (262)
                                  ..+..+     .. ..++||+|+......    ...+..+.+.|+ |||++++
T Consensus        93 ~~wg~p~~~~~~~~l~~~~~~i~~~~~~~~fDlIfIDg~k~----~~~~~~~l~~l~-~GG~Iv~  152 (202)
T 3cvo_A           93 GDWGHPVSDAKWRSYPDYPLAVWRTEGFRHPDVVLVDGRFR----VGCALATAFSIT-RPVTLLF  152 (202)
T ss_dssp             CGGGCBSSSTTGGGTTHHHHGGGGCTTCCCCSEEEECSSSH----HHHHHHHHHHCS-SCEEEEE
T ss_pred             hcccccccchhhhhHHHHhhhhhccccCCCCCEEEEeCCCc----hhHHHHHHHhcC-CCeEEEE
Confidence                        001111     11 247899999765321    356677889999 9999976

>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}

Probab=98.65  E-value=2.3e-08  Score=83.15  Aligned_cols=111  Identities=12%  Similarity=-0.029  Sum_probs=72.5

Q ss_pred             HHHHHHHHhh-CCCCCeEEEEcCcccHhHHHHHhh-C-CeEEEEcCCHHHHHHHhcC----CCceEEeCCCCchhhhhhc
Q 037961           21 KELFKLIASK-TPKRNLAWDVGTRSGQAAASLAQI-Y-QHVIATDTSPKQLKFAIKL----PNIRYQLTPTMSITELEQN   93 (262)
Q Consensus        21 ~~~~~~l~~~-~~~~~~vlDvGcG~G~~~~~l~~~-~-~~v~~vD~s~~~~~~a~~~----~~~~~~~~~~~~~~~~~~~   93 (262)
                      -+|.+..... +.+..+|||||||+|.+++.++.. + .+|+|+|++..+...+...    .++.....+    .++.  
T Consensus        77 fKL~ei~eK~~Lk~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~pi~~~~~g~~ii~~~~~----~dv~--  150 (282)
T 3gcz_A           77 AKLRWMEERGYVKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPIMRTTLGWNLIRFKDK----TDVF--  150 (282)
T ss_dssp             HHHHHHHHTTSCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCCCBTTGGGEEEECS----CCGG--
T ss_pred             HHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCccccccccccCCCceEEeeCC----cchh--
Confidence            3444444443 357789999999999999988754 3 4789999987653322210    122222221    1222  


Q ss_pred             cCCCCceeeEEEccccc----cCChhH---HHHHHHHhhcCCC--eEEEEEecC
Q 037961           94 VATQSSVDLVTIASALH----WFDLPQ---FYKQVKWVLKKPS--GVIAAWTYT  138 (262)
Q Consensus        94 ~~~~~~~D~V~~~~~~~----~~d~~~---~l~~~~r~Lk~pg--G~l~i~~~~  138 (262)
                      .++..++|+|+|..+.+    +.|...   ++.-+.++|+ ||  |.|++=.+.
T Consensus       151 ~l~~~~~DvVLSDmApnsG~~~~D~~rs~~LL~~A~~~Lk-~g~~G~Fv~KvF~  203 (282)
T 3gcz_A          151 NMEVIPGDTLLCDIGESSPSIAVEEQRTLRVLNCAKQWLQ-EGNYTEFCIKVLC  203 (282)
T ss_dssp             GSCCCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHH-HHCCCEEEEEESC
T ss_pred             hcCCCCcCEEEecCccCCCChHHHHHHHHHHHHHHHHHcC-CCCCCcEEEEEec
Confidence            24678899999988877    444333   5777789999 99  999984444

>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}

Probab=98.58  E-value=9.3e-08  Score=87.91  Aligned_cols=112  Identities=17%  Similarity=0.257  Sum_probs=79.2

Q ss_pred             hHHHHHHHHhhCC-CCCeEEEEcCcccHhHHHHHhh-----------------CCeEEEEcCCHHHHHHHhcC---CC--
Q 037961           20 PKELFKLIASKTP-KRNLAWDVGTRSGQAAASLAQI-----------------YQHVIATDTSPKQLKFAIKL---PN--   76 (262)
Q Consensus        20 p~~~~~~l~~~~~-~~~~vlDvGcG~G~~~~~l~~~-----------------~~~v~~vD~s~~~~~~a~~~---~~--   76 (262)
                      |..+.+.|...+. ...+|+|.+||+|.+...++..                 ..+++|+|+++.+++.|+.+   .+  
T Consensus       230 P~~Vv~lmv~ll~p~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~  309 (544)
T 3khk_A          230 PKSIVTLIVEMLEPYKGRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRGID  309 (544)
T ss_dssp             CHHHHHHHHHHHCCCSEEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTTCC
T ss_pred             CHHHHHHHHHHHhcCCCeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhCCC
Confidence            7888888877653 3358999999999988776432                 34799999999999998842   22  


Q ss_pred             --ceEEeCCCCchhhhhhccCCCCceeeEEEccccc---cCC----------------------h-----hHHHHHHHHh
Q 037961           77 --IRYQLTPTMSITELEQNVATQSSVDLVTIASALH---WFD----------------------L-----PQFYKQVKWV  124 (262)
Q Consensus        77 --~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~~---~~d----------------------~-----~~~l~~~~r~  124 (262)
                        +.+..+|.     +........+||+|+++..+.   |-.                      +     -.+++.+.+.
T Consensus       310 ~~i~i~~gDt-----L~~~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~l~~  384 (544)
T 3khk_A          310 FNFGKKNADS-----FLDDQHPDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHMLYH  384 (544)
T ss_dssp             CBCCSSSCCT-----TTSCSCTTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHHHHT
T ss_pred             cccceeccch-----hcCcccccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHHHHHH
Confidence              22244442     111223467899999987775   211                      0     1489999999


Q ss_pred             hcCCCeEEEEEec
Q 037961          125 LKKPSGVIAAWTY  137 (262)
Q Consensus       125 Lk~pgG~l~i~~~  137 (262)
                      |+ |||++++...
T Consensus       385 Lk-~gGr~aiVlP  396 (544)
T 3khk_A          385 LA-PTGSMALLLA  396 (544)
T ss_dssp             EE-EEEEEEEEEE
T ss_pred             hc-cCceEEEEec
Confidence            99 9999998554

>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}

Probab=98.57  E-value=4.5e-08  Score=86.56  Aligned_cols=73  Identities=10%  Similarity=-0.006  Sum_probs=57.1

Q ss_pred             CCCCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhcC--------CCceEEeCCCCchhhhhhc-c-CCCCce
Q 037961           31 TPKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKL--------PNIRYQLTPTMSITELEQN-V-ATQSSV  100 (262)
Q Consensus        31 ~~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~--------~~~~~~~~~~~~~~~~~~~-~-~~~~~~  100 (262)
                      +.++.+|||+|||+|..+..+++.+.+|+++|+|+.|++.|+++        .+++++++|      +.+. + .++++|
T Consensus        91 l~~g~~VLDLgcG~G~~al~LA~~g~~V~~VD~s~~~l~~Ar~N~~~~~~gl~~i~~i~~D------a~~~L~~~~~~~f  164 (410)
T 3ll7_A           91 IREGTKVVDLTGGLGIDFIALMSKASQGIYIERNDETAVAARHNIPLLLNEGKDVNILTGD------FKEYLPLIKTFHP  164 (410)
T ss_dssp             SCTTCEEEESSCSSSHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHSCTTCEEEEEESC------GGGSHHHHHHHCC
T ss_pred             cCCCCEEEEeCCCchHHHHHHHhcCCEEEEEECCHHHHHHHHHhHHHhccCCCcEEEEECc------HHHhhhhccCCCc
Confidence            34578999999999999999999999999999999999998753        357788876      2221 1 123579


Q ss_pred             eeEEEcccc
Q 037961          101 DLVTIASAL  109 (262)
Q Consensus       101 D~V~~~~~~  109 (262)
                      |+|++....
T Consensus       165 DvV~lDPPr  173 (410)
T 3ll7_A          165 DYIYVDPAR  173 (410)
T ss_dssp             SEEEECCEE
T ss_pred             eEEEECCCC
Confidence            999996544

>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}

Probab=98.54  E-value=2.4e-07  Score=69.55  Aligned_cols=99  Identities=12%  Similarity=0.053  Sum_probs=64.5

Q ss_pred             HHHHHHHHhhCCCCCeEEEEcCccc-HhHHHHHh-hCCeEEEEcCCHHHHHHHhcCCCceEEeCCCCchhhhhhccCCCC
Q 037961           21 KELFKLIASKTPKRNLAWDVGTRSG-QAAASLAQ-IYQHVIATDTSPKQLKFAIKLPNIRYQLTPTMSITELEQNVATQS   98 (262)
Q Consensus        21 ~~~~~~l~~~~~~~~~vlDvGcG~G-~~~~~l~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (262)
                      +.+.++|.+...++.+|||||||+| ..+..|++ .+.+|+++|+++..++         ++.+|.+. .+.+    ...
T Consensus        23 e~LaeYI~~~~~~~~rVlEVG~G~g~~vA~~La~~~g~~V~atDInp~Av~---------~v~dDiF~-P~~~----~Y~   88 (153)
T 2k4m_A           23 NDLAVYIIRCSGPGTRVVEVGAGRFLYVSDYIRKHSKVDLVLTDIKPSHGG---------IVRDDITS-PRME----IYR   88 (153)
T ss_dssp             HHHHHHHHHHSCSSSEEEEETCTTCCHHHHHHHHHSCCEEEEECSSCSSTT---------EECCCSSS-CCHH----HHT
T ss_pred             HHHHHHHHhcCCCCCcEEEEccCCChHHHHHHHHhCCCeEEEEECCccccc---------eEEccCCC-Cccc----ccC
Confidence            4566777777677789999999999 69999997 8999999999988665         66555221 0110    013


Q ss_pred             ceeeEEEccccccCChhHHHHHHHHhhcCCCeEEEEEecC
Q 037961           99 SVDLVTIASALHWFDLPQFYKQVKWVLKKPSGVIAAWTYT  138 (262)
Q Consensus        99 ~~D~V~~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~~  138 (262)
                      .||+|.+...     |..+..-+.++-++-|.-++|...+
T Consensus        89 ~~DLIYsirP-----P~El~~~i~~lA~~v~adliI~pL~  123 (153)
T 2k4m_A           89 GAALIYSIRP-----PAEIHSSLMRVADAVGARLIIKPLT  123 (153)
T ss_dssp             TEEEEEEESC-----CTTTHHHHHHHHHHHTCEEEEECBT
T ss_pred             CcCEEEEcCC-----CHHHHHHHHHHHHHcCCCEEEEcCC
Confidence            7999986433     3333333333333235567775444

>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38

Probab=98.53  E-value=5.5e-07  Score=77.04  Aligned_cols=69  Identities=16%  Similarity=0.178  Sum_probs=53.4

Q ss_pred             CCCCeEEEEcCcccHhHHHHHhh---CCeEEEEcCCHHHHHHHhcC------CCceEEeCCCCchhhhhhccCC---CCc
Q 037961           32 PKRNLAWDVGTRSGQAAASLAQI---YQHVIATDTSPKQLKFAIKL------PNIRYQLTPTMSITELEQNVAT---QSS   99 (262)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~~~~~~~~---~~~   99 (262)
                      .++.+|||+|||+|..|..++..   ..+|+++|+++.+++.++++      .++.+..+|      +..+...   ..+
T Consensus       101 ~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~~~v~~~~~D------~~~~~~~~~~~~~  174 (309)
T 2b9e_A          101 PPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEED------FLAVSPSDPRYHE  174 (309)
T ss_dssp             CTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECC------GGGSCTTCGGGTT
T ss_pred             CCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCC------hHhcCccccccCC
Confidence            56789999999999999999885   36899999999999988752      467787765      3333211   157


Q ss_pred             eeeEEEc
Q 037961          100 VDLVTIA  106 (262)
Q Consensus       100 ~D~V~~~  106 (262)
                      ||.|++.
T Consensus       175 fD~Vl~D  181 (309)
T 2b9e_A          175 VHYILLD  181 (309)
T ss_dssp             EEEEEEC
T ss_pred             CCEEEEc
Confidence            9999973

>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}

Probab=98.50  E-value=8e-07  Score=83.99  Aligned_cols=112  Identities=17%  Similarity=0.133  Sum_probs=77.6

Q ss_pred             hHHHHHHHHhh----C----CCCCeEEEEcCcccHhHHHHHhhC-----CeEEEEcCCHHHHHHH--hcC-------CC-
Q 037961           20 PKELFKLIASK----T----PKRNLAWDVGTRSGQAAASLAQIY-----QHVIATDTSPKQLKFA--IKL-------PN-   76 (262)
Q Consensus        20 p~~~~~~l~~~----~----~~~~~vlDvGcG~G~~~~~l~~~~-----~~v~~vD~s~~~~~~a--~~~-------~~-   76 (262)
                      |.++.+.+...    .    +++.+|||.|||+|.+...++...     .+++|+|+++.+++.|  +..       .+ 
T Consensus       300 P~eLA~lMVeLA~ill~~~l~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi  379 (878)
T 3s1s_A          300 DIELGKVLSIISQHILGRPLTEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSSN  379 (878)
T ss_dssp             CHHHHHHHHHHHHHHHCSCCCTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTT
T ss_pred             CHHHHHHHHHHHhhhccccCCCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCC
Confidence            67777776655    2    246799999999999999988764     3799999999999988  321       11 


Q ss_pred             --ceEEeCCCCchhhhhh-ccCCCCceeeEEEccccc--cCC----------------------------hhHHHHHHHH
Q 037961           77 --IRYQLTPTMSITELEQ-NVATQSSVDLVTIASALH--WFD----------------------------LPQFYKQVKW  123 (262)
Q Consensus        77 --~~~~~~~~~~~~~~~~-~~~~~~~~D~V~~~~~~~--~~d----------------------------~~~~l~~~~r  123 (262)
                        ..+. ++     ++.. .+...++||+|+++..+-  +-.                            ...+++.+.+
T Consensus       380 ~~~~I~-~d-----D~L~~~~~~~~kFDVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~  453 (878)
T 3s1s_A          380 NAPTIT-GE-----DVCSLNPEDFANVSVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTE  453 (878)
T ss_dssp             BCCEEE-CC-----CGGGCCGGGGTTEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHH
T ss_pred             CcceEE-ec-----chhcccccccCCCCEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHH
Confidence              1222 22     2222 112356899999998872  111                            1126788999


Q ss_pred             hhcCCCeEEEEEecC
Q 037961          124 VLKKPSGVIAAWTYT  138 (262)
Q Consensus       124 ~Lk~pgG~l~i~~~~  138 (262)
                      .|+ |||+++++...
T Consensus       454 lLK-pGGrLAfIlP~  467 (878)
T 3s1s_A          454 LVQ-DGTVISAIMPK  467 (878)
T ss_dssp             HSC-TTCEEEEEEET
T ss_pred             hcC-CCcEEEEEECh
Confidence            999 99999986654

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=98.48  E-value=6.7e-07  Score=84.70  Aligned_cols=111  Identities=12%  Similarity=0.059  Sum_probs=76.1

Q ss_pred             HHHHHHHHhhC--CCCCeEEEEcCcccHhHHHHHhhC-------------------------------------------
Q 037961           21 KELFKLIASKT--PKRNLAWDVGTRSGQAAASLAQIY-------------------------------------------   55 (262)
Q Consensus        21 ~~~~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~-------------------------------------------   55 (262)
                      +.+...++...  +++..+||.+||+|.++...+..+                                           
T Consensus       176 e~LAa~ll~~~~~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~  255 (703)
T 3v97_A          176 ETLAAAIVMRSGWQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEY  255 (703)
T ss_dssp             HHHHHHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHhhCCCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccC
Confidence            56666665554  366789999999999988776532                                           


Q ss_pred             -CeEEEEcCCHHHHHHHhcC-------CCceEEeCCCCchhhhhhc--cCCCCceeeEEEcccccc-C-C---hhHHHH-
Q 037961           56 -QHVIATDTSPKQLKFAIKL-------PNIRYQLTPTMSITELEQN--VATQSSVDLVTIASALHW-F-D---LPQFYK-  119 (262)
Q Consensus        56 -~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~~~~~--~~~~~~~D~V~~~~~~~~-~-d---~~~~l~-  119 (262)
                       .+++|+|+++.|++.|+.+       ..+.+.++|      +.++  +...++||+|+++..+.- + +   ...+++ 
T Consensus       256 ~~~i~G~Did~~av~~A~~N~~~agv~~~i~~~~~D------~~~~~~~~~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly~~  329 (703)
T 3v97_A          256 SSHFYGSDSDARVIQRARTNARLAGIGELITFEVKD------VAQLTNPLPKGPYGTVLSNPPYGERLDSEPALIALHSL  329 (703)
T ss_dssp             CCCEEEEESCHHHHHHHHHHHHHTTCGGGEEEEECC------GGGCCCSCTTCCCCEEEECCCCCC---CCHHHHHHHHH
T ss_pred             CccEEEEECCHHHHHHHHHHHHHcCCCCceEEEECC------hhhCccccccCCCCEEEeCCCccccccchhHHHHHHHH
Confidence             4799999999999999863       236777765      3333  223348999999977642 1 2   233444 


Q ss_pred             --HHHHhhcCCCeEEEEEecC
Q 037961          120 --QVKWVLKKPSGVIAAWTYT  138 (262)
Q Consensus       120 --~~~r~Lk~pgG~l~i~~~~  138 (262)
                        ++.+.+. |||.+++.+..
T Consensus       330 l~~~lk~~~-~g~~~~ilt~~  349 (703)
T 3v97_A          330 LGRIMKNQF-GGWNLSLFSAS  349 (703)
T ss_dssp             HHHHHHHHC-TTCEEEEEESC
T ss_pred             HHHHHHhhC-CCCeEEEEeCC
Confidence              4445556 79999986543

>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}

Probab=98.44  E-value=6.1e-07  Score=82.35  Aligned_cols=115  Identities=17%  Similarity=0.154  Sum_probs=81.7

Q ss_pred             hHHHHHHHHhhCC------CCCeEEEEcCcccHhHHHHHhh-----CCeEEEEcCCHHHHHHHhcC--------CCceEE
Q 037961           20 PKELFKLIASKTP------KRNLAWDVGTRSGQAAASLAQI-----YQHVIATDTSPKQLKFAIKL--------PNIRYQ   80 (262)
Q Consensus        20 p~~~~~~l~~~~~------~~~~vlDvGcG~G~~~~~l~~~-----~~~v~~vD~s~~~~~~a~~~--------~~~~~~   80 (262)
                      |..+.+.|...+.      ++.+|+|.+||+|.+...++..     ..+++|+|+++.+++.|+.+        .++.+.
T Consensus       202 P~~Vv~lmv~ll~~~~~~~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~~~~I~  281 (542)
T 3lkd_A          202 PQPVAKLMTQIAFLGREDKQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPIENQFLH  281 (542)
T ss_dssp             CHHHHHHHHHHHHTTCTTCTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEE
T ss_pred             cHHHHHHHHHHHhcccCCCCCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCCcCccceE
Confidence            6777777666542      5679999999999998888775     45899999999999998742        244567


Q ss_pred             eCCCCchhhhhhcc-CCCCceeeEEEccccc--cC-------Ch---------------hHHHHHHHHhhcCCCeEEEEE
Q 037961           81 LTPTMSITELEQNV-ATQSSVDLVTIASALH--WF-------DL---------------PQFYKQVKWVLKKPSGVIAAW  135 (262)
Q Consensus        81 ~~~~~~~~~~~~~~-~~~~~~D~V~~~~~~~--~~-------d~---------------~~~l~~~~r~Lk~pgG~l~i~  135 (262)
                      .+|.+.    .++| ....+||+|+++..+.  |-       |+               -.+++.+.+.|++|||++++.
T Consensus       282 ~gDtL~----~d~p~~~~~~fD~IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~gGr~a~V  357 (542)
T 3lkd_A          282 NADTLD----EDWPTQEPTNFDGVLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQDNGVMAIV  357 (542)
T ss_dssp             ESCTTT----SCSCCSSCCCBSEEEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTTTCEEEEE
T ss_pred             ecceec----ccccccccccccEEEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCCceeEEEE
Confidence            776221    1122 3467899999986653  31       10               127899999998459999875


Q ss_pred             ecC
Q 037961          136 TYT  138 (262)
Q Consensus       136 ~~~  138 (262)
                      ...
T Consensus       358 lP~  360 (542)
T 3lkd_A          358 LPH  360 (542)
T ss_dssp             EET
T ss_pred             ecc
Confidence            543

>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*

Probab=98.40  E-value=4.6e-07  Score=75.82  Aligned_cols=110  Identities=9%  Similarity=-0.078  Sum_probs=69.9

Q ss_pred             HHHHHHH-hhCCCCCeEEEEcCcccHhHHHHHhh-C-CeEEEEcCCHHHHHHHhc----CCCceEEeCCCCchhhhhhcc
Q 037961           22 ELFKLIA-SKTPKRNLAWDVGTRSGQAAASLAQI-Y-QHVIATDTSPKQLKFAIK----LPNIRYQLTPTMSITELEQNV   94 (262)
Q Consensus        22 ~~~~~l~-~~~~~~~~vlDvGcG~G~~~~~l~~~-~-~~v~~vD~s~~~~~~a~~----~~~~~~~~~~~~~~~~~~~~~   94 (262)
                      +|.+... ..++++.+||||||++|.+++.+++. + ..|+|+|++..+......    ..++......    .++.  .
T Consensus        69 KL~ei~ek~l~~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~~~~P~~~~~~~~~iv~~~~~----~di~--~  142 (300)
T 3eld_A           69 KIRWLHERGYLRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHEKPIHMQTLGWNIVKFKDK----SNVF--T  142 (300)
T ss_dssp             HHHHHHHHTSCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCCCBTTGGGEEEECS----CCTT--T
T ss_pred             HHHHHHHhCCCCCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEeccccccccccccccCCceEEeecC----ceee--e
Confidence            3433333 33468899999999999999999975 3 478899998653211110    0122222211    1122  2


Q ss_pred             CCCCceeeEEEccccc----cCChh---HHHHHHHHhhcCCC-eEEEEEecC
Q 037961           95 ATQSSVDLVTIASALH----WFDLP---QFYKQVKWVLKKPS-GVIAAWTYT  138 (262)
Q Consensus        95 ~~~~~~D~V~~~~~~~----~~d~~---~~l~~~~r~Lk~pg-G~l~i~~~~  138 (262)
                      +..+++|+|+|..+.+    ..|..   .++.-+.++|+ || |.|++=.+.
T Consensus       143 l~~~~~DlVlsD~APnsG~~~~D~~rs~~LL~~A~~~Lk-pG~G~FV~KvF~  193 (300)
T 3eld_A          143 MPTEPSDTLLCDIGESSSNPLVERDRTMKVLENFERWKH-VNTENFCVKVLA  193 (300)
T ss_dssp             SCCCCCSEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCC-TTCCEEEEEESS
T ss_pred             cCCCCcCEEeecCcCCCCCHHHHHHHHHHHHHHHHHHhc-CCCCcEEEEecc
Confidence            3567899999987777    22332   25777789999 99 999984444

>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23

Probab=98.26  E-value=5.8e-06  Score=69.05  Aligned_cols=91  Identities=18%  Similarity=0.139  Sum_probs=68.1

Q ss_pred             hCCCChHHHHHHHHhhCCCCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhcC--CCceEEeCCCCchhh-hh
Q 037961           15 ARPNYPKELFKLIASKTPKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKL--PNIRYQLTPTMSITE-LE   91 (262)
Q Consensus        15 ~rp~yp~~~~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~--~~~~~~~~~~~~~~~-~~   91 (262)
                      |.|...+++++.+.  ..++.+++|++||.|..|..+++++.+|+|+|.++.+++.|++.  .++.++.++-..+.. +.
T Consensus         6 H~pVLl~e~le~L~--~~~gg~~VD~T~G~GGHS~~il~~~g~VigiD~Dp~Ai~~A~~L~~~rv~lv~~~f~~l~~~L~   83 (285)
T 1wg8_A            6 HVPVLYQEALDLLA--VRPGGVYVDATLGGAGHARGILERGGRVIGLDQDPEAVARAKGLHLPGLTVVQGNFRHLKRHLA   83 (285)
T ss_dssp             CCCTTHHHHHHHHT--CCTTCEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHTCCTTEEEEESCGGGHHHHHH
T ss_pred             chhHHHHHHHHhhC--CCCCCEEEEeCCCCcHHHHHHHHCCCEEEEEeCCHHHHHHHHhhccCCEEEEECCcchHHHHHH
Confidence            67888888888773  35778999999999999999999888999999999999988763  367888776111111 12


Q ss_pred             hccCCCCceeeEEEcccc
Q 037961           92 QNVATQSSVDLVTIASAL  109 (262)
Q Consensus        92 ~~~~~~~~~D~V~~~~~~  109 (262)
                      ..  ..+++|.|++..++
T Consensus        84 ~~--g~~~vDgIL~DLGv   99 (285)
T 1wg8_A           84 AL--GVERVDGILADLGV   99 (285)
T ss_dssp             HT--TCSCEEEEEEECSC
T ss_pred             Hc--CCCCcCEEEeCCcc
Confidence            22  23579999975443

>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}

Probab=98.23  E-value=2e-06  Score=71.49  Aligned_cols=99  Identities=16%  Similarity=0.210  Sum_probs=63.3

Q ss_pred             CCCCeEEEEcCcccHhHHHHHhh-------C-------CeEEEEcCCH---HHHHHH-----------hcC---------
Q 037961           32 PKRNLAWDVGTRSGQAAASLAQI-------Y-------QHVIATDTSP---KQLKFA-----------IKL---------   74 (262)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~-------~-------~~v~~vD~s~---~~~~~a-----------~~~---------   74 (262)
                      .+..+|||+|+|+|..+..+++.       .       .+++++|..|   ++++.+           +++         
T Consensus        59 ~~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~  138 (257)
T 2qy6_A           59 HPLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLP  138 (257)
T ss_dssp             SSEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCS
T ss_pred             CCCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhcccccc
Confidence            35578999999999988876542       1       3799999876   554433           211         


Q ss_pred             -----------CCceEEeCCCCchhhhhh-ccC-CC---CceeeEEEccccccCC----hhHHHHHHHHhhcCCCeEEEE
Q 037961           75 -----------PNIRYQLTPTMSITELEQ-NVA-TQ---SSVDLVTIASALHWFD----LPQFYKQVKWVLKKPSGVIAA  134 (262)
Q Consensus        75 -----------~~~~~~~~~~~~~~~~~~-~~~-~~---~~~D~V~~~~~~~~~d----~~~~l~~~~r~Lk~pgG~l~i  134 (262)
                                 .++++..+      |+.+ ++- ++   .+||+|+....-.--+    ...+++.++++|+ |||+|+.
T Consensus       139 g~~r~~~~~~~~~l~l~~G------Da~~~l~~~~~~~~~~~D~iflD~fsp~~~p~lw~~~~l~~l~~~L~-pGG~l~t  211 (257)
T 2qy6_A          139 GCHRLLLDEGRVTLDLWFG------DINELISQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLAR-PGGTLAT  211 (257)
T ss_dssp             EEEEEEEC--CEEEEEEES------CHHHHGGGSCGGGTTCEEEEEECSSCTTTCGGGCCHHHHHHHHHHEE-EEEEEEE
T ss_pred             chhheeccCCceEEEEEEC------cHHHHHhhcccccCCeEEEEEECCCCcccChhhcCHHHHHHHHHHcC-CCcEEEE
Confidence                       12334444      4444 331 22   3799999752111112    3469999999999 9999997


Q ss_pred             Eec
Q 037961          135 WTY  137 (262)
Q Consensus       135 ~~~  137 (262)
                      |+.
T Consensus       212 ysa  214 (257)
T 2qy6_A          212 FTS  214 (257)
T ss_dssp             SCC
T ss_pred             EeC
Confidence            664

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=98.19  E-value=2.1e-06  Score=72.96  Aligned_cols=59  Identities=14%  Similarity=0.165  Sum_probs=51.1

Q ss_pred             hCCCChHHHHHHHHhhC-CCCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhc
Q 037961           15 ARPNYPKELFKLIASKT-PKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIK   73 (262)
Q Consensus        15 ~rp~yp~~~~~~l~~~~-~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~   73 (262)
                      +-..+|.++++.++... .++..|||++||+|..+..++..+.+++|+|+++.+++.|++
T Consensus       216 h~~~~p~~l~~~~i~~~~~~~~~vlD~f~GsGt~~~~a~~~g~~~~g~e~~~~~~~~a~~  275 (297)
T 2zig_A          216 HPAPFPLELAERLVRMFSFVGDVVLDPFAGTGTTLIAAARWGRRALGVELVPRYAQLAKE  275 (297)
T ss_dssp             --CCSCHHHHHHHHHHHCCTTCEEEETTCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHcCCeEEEEeCCHHHHHHHHH
Confidence            44568889988887654 578899999999999999999999999999999999999875

>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*

Probab=98.13  E-value=6.5e-06  Score=71.70  Aligned_cols=101  Identities=12%  Similarity=0.034  Sum_probs=71.6

Q ss_pred             CCCCeEEEEcCcccHhHHHHHhh-CCeEEEEcCCHHHHHHHhcC--------------CCceEEeCCCCchhhhhhccCC
Q 037961           32 PKRNLAWDVGTRSGQAAASLAQI-YQHVIATDTSPKQLKFAIKL--------------PNIRYQLTPTMSITELEQNVAT   96 (262)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~--------------~~~~~~~~~~~~~~~~~~~~~~   96 (262)
                      ++..+||=+|-|.|..++.+.++ ..+|+.||+++.+++.+++.              ++++++.+|...  -++...-.
T Consensus       204 ~~pkrVLIIGgGdG~~~revlkh~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~--fl~~~~~~  281 (381)
T 3c6k_A          204 YTGKDVLILGGGDGGILCEIVKLKPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIP--VLKRYAKE  281 (381)
T ss_dssp             CTTCEEEEEECTTCHHHHHHHTTCCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHH--HHHHHHHH
T ss_pred             CCCCeEEEECCCcHHHHHHHHhcCCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHH--HHHhhhhc
Confidence            35678999999999999999886 45899999999999999862              235666665100  01111113


Q ss_pred             CCceeeEEEccccccC--C---------hhHHHHHHHHhhcCCCeEEEEE
Q 037961           97 QSSVDLVTIASALHWF--D---------LPQFYKQVKWVLKKPSGVIAAW  135 (262)
Q Consensus        97 ~~~~D~V~~~~~~~~~--d---------~~~~l~~~~r~Lk~pgG~l~i~  135 (262)
                      .++||+|+....-...  +         ...+++.+.++|+ |||+++..
T Consensus       282 ~~~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~-p~GVlv~Q  330 (381)
T 3c6k_A          282 GREFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLK-QDGKYFTQ  330 (381)
T ss_dssp             TCCEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEE-EEEEEEEE
T ss_pred             cCceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcC-CCCEEEEe
Confidence            4679999986432221  1         2457889999999 99999873

>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*

Probab=98.13  E-value=4e-06  Score=68.75  Aligned_cols=99  Identities=9%  Similarity=-0.084  Sum_probs=61.0

Q ss_pred             hCCCCCeEEEEcCcccHhHHHHHhh--CCeEEEEcCCHHH--HHHHhcCCCceEEe---CCCCchhhhhhccCCCCceee
Q 037961           30 KTPKRNLAWDVGTRSGQAAASLAQI--YQHVIATDTSPKQ--LKFAIKLPNIRYQL---TPTMSITELEQNVATQSSVDL  102 (262)
Q Consensus        30 ~~~~~~~vlDvGcG~G~~~~~l~~~--~~~v~~vD~s~~~--~~~a~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~D~  102 (262)
                      .++++.+|||+||++|.+++..++.  ...|.|.++..+.  .......+++.++.   +     .|+.+  ++..++|+
T Consensus        70 likpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~~~~P~~~~~~Gv~~i~~~~G-----~Df~~--~~~~~~Dv  142 (269)
T 2px2_A           70 FVQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPGHEEPMLMQSYGWNIVTMKSG-----VDVFY--KPSEISDT  142 (269)
T ss_dssp             SCCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECS-----CCGGG--SCCCCCSE
T ss_pred             CCCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEccccccCCCcccCCCceEEEeecc-----CCccC--CCCCCCCE
Confidence            4578999999999999999999886  3344444444331  10000013443333   4     13333  24568999


Q ss_pred             EEEccccc---cC-ChhH---HHHHHHHhhcCCCe-EEEEEe
Q 037961          103 VTIASALH---WF-DLPQ---FYKQVKWVLKKPSG-VIAAWT  136 (262)
Q Consensus       103 V~~~~~~~---~~-d~~~---~l~~~~r~Lk~pgG-~l~i~~  136 (262)
                      |+|..+-.   +. |...   ++.-+.++|+ ||| .|++=.
T Consensus       143 VLSDMAPnSG~~~vD~~Rs~~aL~~A~~~Lk-~gG~~FvvKV  183 (269)
T 2px2_A          143 LLCDIGESSPSAEIEEQRTLRILEMVSDWLS-RGPKEFCIKI  183 (269)
T ss_dssp             EEECCCCCCSCHHHHHHHHHHHHHHHHHHHT-TCCSEEEEEE
T ss_pred             EEeCCCCCCCccHHHHHHHHHHHHHHHHHhh-cCCcEEEEEE
Confidence            99865432   22 4333   5667779999 999 888733

>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}

Probab=97.82  E-value=0.00011  Score=61.40  Aligned_cols=115  Identities=9%  Similarity=-0.020  Sum_probs=69.5

Q ss_pred             CCCCCeEEEEcCcccHhHHHHHhh-CC-eEEEEcCCHHHHHHH---hcC--CCceEEeCCCCchhhhhhccCCCCceeeE
Q 037961           31 TPKRNLAWDVGTRSGQAAASLAQI-YQ-HVIATDTSPKQLKFA---IKL--PNIRYQLTPTMSITELEQNVATQSSVDLV  103 (262)
Q Consensus        31 ~~~~~~vlDvGcG~G~~~~~l~~~-~~-~v~~vD~s~~~~~~a---~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~D~V  103 (262)
                      +.++..||||||++|.++..++.. +. +|+|+|+...-.+.-   +++  ..+.+..+-     |+..++  ..++|+|
T Consensus        92 l~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~P~~~~ql~w~lV~~~~~~-----Dv~~l~--~~~~D~i  164 (321)
T 3lkz_A           92 LEPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEEPQLVQSYGWNIVTMKSGV-----DVFYRP--SECCDTL  164 (321)
T ss_dssp             CCCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCCCCCCCBTTGGGEEEECSC-----CTTSSC--CCCCSEE
T ss_pred             CCCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccCcchhhhcCCcceEEEecc-----CHhhCC--CCCCCEE
Confidence            357789999999999999977654 44 699999986621100   011  235555541     333333  3679999


Q ss_pred             EEcccc----ccCChhH---HHHHHHHhhcCCC-eEEEEEecCC--CcccHHHHHhhccc
Q 037961          104 TIASAL----HWFDLPQ---FYKQVKWVLKKPS-GVIAAWTYTM--PEINESVGAVFKPF  153 (262)
Q Consensus       104 ~~~~~~----~~~d~~~---~l~~~~r~Lk~pg-G~l~i~~~~~--~~~~~~~~~~~~~~  153 (262)
                      +|.-+=    .++|...   +|+-+.+.|+ +| |.|+|=....  +.+.+.+..+-..|
T Consensus       165 vcDigeSs~~~~ve~~Rtl~vLel~~~wL~-~~~~~f~~KVl~pY~~~v~e~l~~lq~~f  223 (321)
T 3lkz_A          165 LCDIGESSSSAEVEEHRTIRVLEMVEDWLH-RGPREFCVKVLCPYMPKVIEKMELLQRRY  223 (321)
T ss_dssp             EECCCCCCSCHHHHHHHHHHHHHHHHHHHT-TCCCEEEEEESCTTSHHHHHHHHHHHHHH
T ss_pred             EEECccCCCChhhhhhHHHHHHHHHHHHhc-cCCCcEEEEEcCCCChHHHHHHHHHHHHh
Confidence            997661    1223222   5666678899 88 8888733332  44434444444444

>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}

Probab=97.72  E-value=0.00011  Score=61.66  Aligned_cols=99  Identities=12%  Similarity=0.062  Sum_probs=68.0

Q ss_pred             CCCCeEEEEcCcccHhHHHHHhh-------CCeEEEEcCCHH--------------------------HHHHHhc-----
Q 037961           32 PKRNLAWDVGTRSGQAAASLAQI-------YQHVIATDTSPK--------------------------QLKFAIK-----   73 (262)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~-------~~~v~~vD~s~~--------------------------~~~~a~~-----   73 (262)
                      .....|||+|+..|..+..++..       ..+|+++|..+.                          .++.+++     
T Consensus       105 ~~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~  184 (282)
T 2wk1_A          105 NVPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNY  184 (282)
T ss_dssp             TCCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHT
T ss_pred             CCCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHc
Confidence            34568899999999999887642       568999996421                          2333432     


Q ss_pred             -C--CCceEEeCCCCchhhhhhcc-CCCCceeeEEEccccccCChhHHHHHHHHhhcCCCeEEEEEec
Q 037961           74 -L--PNIRYQLTPTMSITELEQNV-ATQSSVDLVTIASALHWFDLPQFYKQVKWVLKKPSGVIAAWTY  137 (262)
Q Consensus        74 -~--~~~~~~~~~~~~~~~~~~~~-~~~~~~D~V~~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~  137 (262)
                       .  .+++++.++.     .+.++ ++.++||+|....-. +-.....++.+...|+ |||++++=++
T Consensus       185 gl~~~~I~li~Gda-----~etL~~~~~~~~d~vfIDaD~-y~~~~~~Le~~~p~L~-pGGiIv~DD~  245 (282)
T 2wk1_A          185 DLLDEQVRFLPGWF-----KDTLPTAPIDTLAVLRMDGDL-YESTWDTLTNLYPKVS-VGGYVIVDDY  245 (282)
T ss_dssp             TCCSTTEEEEESCH-----HHHSTTCCCCCEEEEEECCCS-HHHHHHHHHHHGGGEE-EEEEEEESSC
T ss_pred             CCCcCceEEEEeCH-----HHHHhhCCCCCEEEEEEcCCc-cccHHHHHHHHHhhcC-CCEEEEEcCC
Confidence             1  5788998861     12222 345789999987542 1134568999999999 9999988333

>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}

Probab=97.72  E-value=0.00024  Score=65.05  Aligned_cols=116  Identities=10%  Similarity=0.112  Sum_probs=77.7

Q ss_pred             hHHHHHHHHhhCC--CCCeEEEEcCcccHhHHHHHhh---------------CCeEEEEcCCHHHHHHHhcC------CC
Q 037961           20 PKELFKLIASKTP--KRNLAWDVGTRSGQAAASLAQI---------------YQHVIATDTSPKQLKFAIKL------PN   76 (262)
Q Consensus        20 p~~~~~~l~~~~~--~~~~vlDvGcG~G~~~~~l~~~---------------~~~v~~vD~s~~~~~~a~~~------~~   76 (262)
                      |..+.+.+...+.  ++.+|+|-+||+|.+......+               -..++|.|+++.+...|+-+      ..
T Consensus       202 P~~Vv~lmv~l~~p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~lhg~~~  281 (530)
T 3ufb_A          202 PRPVVRFMVEVMDPQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLLHGLEY  281 (530)
T ss_dssp             CHHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHHHTCSC
T ss_pred             cHHHHHHHHHhhccCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHhcCCcc
Confidence            7888888887763  5668999999999998776542               24699999999999988731      23


Q ss_pred             ceEEeCCCCchhhhhhccCCCCceeeEEEccccccC-C---------------h-hHHHHHHHHhhcC------CCeEEE
Q 037961           77 IRYQLTPTMSITELEQNVATQSSVDLVTIASALHWF-D---------------L-PQFYKQVKWVLKK------PSGVIA  133 (262)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~~~~-d---------------~-~~~l~~~~r~Lk~------pgG~l~  133 (262)
                      ..+..++.+... ... .....+||+|+++..+.-- +               . -.+++.+.+.||+      |||+++
T Consensus       282 ~~I~~~dtL~~~-~~~-~~~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~~~~~l~~gGr~a  359 (530)
T 3ufb_A          282 PRIDPENSLRFP-LRE-MGDKDRVDVILTNPPFGGEEEKGILGNFPEDMQTAETAMLFLQLIMRKLKRPGHGSDNGGRAA  359 (530)
T ss_dssp             CEEECSCTTCSC-GGG-CCGGGCBSEEEECCCSSCBCCHHHHTTSCGGGCCCBHHHHHHHHHHHHBCCTTSSSSSCCEEE
T ss_pred             ccccccccccCc-hhh-hcccccceEEEecCCCCccccccccccCchhcccchhHHHHHHHHHHHhhhhhhccCCCceEE
Confidence            345555522111 011 1134579999999887411 0               0 1267888888862      599999


Q ss_pred             EEec
Q 037961          134 AWTY  137 (262)
Q Consensus       134 i~~~  137 (262)
                      +...
T Consensus       360 vVlP  363 (530)
T 3ufb_A          360 VVVP  363 (530)
T ss_dssp             EEEE
T ss_pred             EEec
Confidence            8554

>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*

Probab=97.70  E-value=0.00031  Score=61.04  Aligned_cols=100  Identities=18%  Similarity=0.128  Sum_probs=70.5

Q ss_pred             CCCCeEEEEcCcccHhHHHHHhhCC--eEEEEcCCHHHHHHHhcC------------CCceEEeCCCCchhhhhhcc-CC
Q 037961           32 PKRNLAWDVGTRSGQAAASLAQIYQ--HVIATDTSPKQLKFAIKL------------PNIRYQLTPTMSITELEQNV-AT   96 (262)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~------------~~~~~~~~~~~~~~~~~~~~-~~   96 (262)
                      .++.+|||++||+|.=|.+++..+.  .|+++|+++.-++..+++            .++.+...|      +..++ ..
T Consensus       147 ~pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D------~~~~~~~~  220 (359)
T 4fzv_A          147 QPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWD------GRKWGELE  220 (359)
T ss_dssp             CTTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCC------GGGHHHHS
T ss_pred             CCCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCc------hhhcchhc
Confidence            5788999999999999999988754  799999999988766531            244555444      33322 24


Q ss_pred             CCceeeEEEcccc-------c-------cC-C----------hhHHHHHHHHhhcCCCeEEEEEecC
Q 037961           97 QSSVDLVTIASAL-------H-------WF-D----------LPQFYKQVKWVLKKPSGVIAAWTYT  138 (262)
Q Consensus        97 ~~~~D~V~~~~~~-------~-------~~-d----------~~~~l~~~~r~Lk~pgG~l~i~~~~  138 (262)
                      .+.||.|++.-.+       .       |- .          ..+++..+.++|| |||+|+-.+++
T Consensus       221 ~~~fD~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk-pGG~LVYsTCS  286 (359)
T 4fzv_A          221 GDTYDRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATK-PGGHVVYSTCS  286 (359)
T ss_dssp             TTCEEEEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEE-EEEEEEEEESC
T ss_pred             cccCCEEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCC-CCcEEEEEeCC
Confidence            5789999963221       1       11 1          1236778899999 99999986765

>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59

Probab=97.63  E-value=0.00015  Score=60.54  Aligned_cols=113  Identities=15%  Similarity=0.152  Sum_probs=82.4

Q ss_pred             HHHHHHHHhhCCCCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhcC----CCceEEeCCCCchhhhhhccCC
Q 037961           21 KELFKLIASKTPKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKL----PNIRYQLTPTMSITELEQNVAT   96 (262)
Q Consensus        21 ~~~~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~----~~~~~~~~~~~~~~~~~~~~~~   96 (262)
                      ..+++.+...  .+..+||+=+|||.++..+.+.+.+++.+|.++..++..+++    .++.+...|.+.  .+..+..+
T Consensus        81 ~~yf~~l~~~--n~~~~LDlfaGSGaLgiEaLS~~d~~vfvE~~~~a~~~L~~Nl~~~~~~~V~~~D~~~--~L~~l~~~  156 (283)
T 2oo3_A           81 LEYISVIKQI--NLNSTLSYYPGSPYFAINQLRSQDRLYLCELHPTEYNFLLKLPHFNKKVYVNHTDGVS--KLNALLPP  156 (283)
T ss_dssp             HHHHHHHHHH--SSSSSCCEEECHHHHHHHHSCTTSEEEEECCSHHHHHHHTTSCCTTSCEEEECSCHHH--HHHHHCSC
T ss_pred             HHHHHHHHHh--cCCCceeEeCCcHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHhCcCCcEEEEeCcHHH--HHHHhcCC
Confidence            4567777663  234469999999999999999888999999999999988864    356667665111  12222234


Q ss_pred             CCceeeEEEccccccC-ChhHHHHHHHH--hhcCCCeEEEEEecC
Q 037961           97 QSSVDLVTIASALHWF-DLPQFYKQVKW--VLKKPSGVIAAWTYT  138 (262)
Q Consensus        97 ~~~~D~V~~~~~~~~~-d~~~~l~~~~r--~Lk~pgG~l~i~~~~  138 (262)
                      ..+||+|++......- +.+++++.+.+  .+. |+|++++|-..
T Consensus       157 ~~~fdLVfiDPPYe~k~~~~~vl~~L~~~~~r~-~~Gi~v~WYPi  200 (283)
T 2oo3_A          157 PEKRGLIFIDPSYERKEEYKEIPYAIKNAYSKF-STGLYCVWYPV  200 (283)
T ss_dssp             TTSCEEEEECCCCCSTTHHHHHHHHHHHHHHHC-TTSEEEEEEEE
T ss_pred             CCCccEEEECCCCCCCcHHHHHHHHHHHhCccC-CCeEEEEEEec
Confidence            4579999999888754 66667666655  345 89999998754

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=97.63  E-value=8.5e-05  Score=61.71  Aligned_cols=57  Identities=19%  Similarity=0.219  Sum_probs=50.1

Q ss_pred             CCChHHHHHHHHhh-CCCCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhc
Q 037961           17 PNYPKELFKLIASK-TPKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIK   73 (262)
Q Consensus        17 p~yp~~~~~~l~~~-~~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~   73 (262)
                      ...|.++++.++.. ..++..|||..||+|..+......+.+++|+|+++..++.+++
T Consensus       195 ~~~p~~l~~~~i~~~~~~~~~vlD~f~GsGtt~~~a~~~gr~~ig~e~~~~~~~~~~~  252 (260)
T 1g60_A          195 TPKPRDLIERIIRASSNPNDLVLDCFMGSGTTAIVAKKLGRNFIGCDMNAEYVNQANF  252 (260)
T ss_dssp             CCCCHHHHHHHHHHHCCTTCEEEESSCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHcCCeEEEEeCCHHHHHHHHH
Confidence            45678888887665 4688999999999999999999999999999999999998875

>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*

Probab=97.62  E-value=0.00014  Score=58.82  Aligned_cols=114  Identities=11%  Similarity=0.023  Sum_probs=70.2

Q ss_pred             CCCCCeEEEEcCcccHhHHHHHhh-C-CeEEEEcCCHHHHHHHh--c---CCCceEEeCCCCchhhhhhccCCCCceeeE
Q 037961           31 TPKRNLAWDVGTRSGQAAASLAQI-Y-QHVIATDTSPKQLKFAI--K---LPNIRYQLTPTMSITELEQNVATQSSVDLV  103 (262)
Q Consensus        31 ~~~~~~vlDvGcG~G~~~~~l~~~-~-~~v~~vD~s~~~~~~a~--~---~~~~~~~~~~~~~~~~~~~~~~~~~~~D~V  103 (262)
                      +.++..|+|+||++|.+++..+.. + .+|+|+|+...-.+.-+  +   -+.+.+..+-     |+..+  +..++|.|
T Consensus        76 l~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe~P~~~~s~gwn~v~fk~gv-----Dv~~~--~~~~~Dtl  148 (267)
T 3p8z_A           76 VIPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEEPVPMSTYGWNIVKLMSGK-----DVFYL--PPEKCDTL  148 (267)
T ss_dssp             SCCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCCCCCTTTTSEEEECSC-----CGGGC--CCCCCSEE
T ss_pred             CCCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCccCcchhhhcCcCceEEEecc-----ceeec--CCccccEE
Confidence            367789999999999999977664 4 47999999865322100  0   1567777661     33333  34779999


Q ss_pred             EEccccc----cCChhH---HHHHHHHhhcCCCeEEEEEec--CCCcccHHHHHhhccc
Q 037961          104 TIASALH----WFDLPQ---FYKQVKWVLKKPSGVIAAWTY--TMPEINESVGAVFKPF  153 (262)
Q Consensus       104 ~~~~~~~----~~d~~~---~l~~~~r~Lk~pgG~l~i~~~--~~~~~~~~~~~~~~~~  153 (262)
                      +|.-+=-    ++|...   +++-+.+.|+ + |.|+|=..  ..+.+.+.+..+-.+|
T Consensus       149 lcDIgeSs~~~~vE~~RtlrvLela~~wL~-~-~~fc~KVl~py~p~v~e~l~~lq~~f  205 (267)
T 3p8z_A          149 LCDIGESSPSPTVEESRTIRVLKMVEPWLK-N-NQFCIKVLNPYMPTVIEHLERLQRKH  205 (267)
T ss_dssp             EECCCCCCSCHHHHHHHHHHHHHHHGGGCS-S-CEEEEEESCCCSHHHHHHHHHHHHHH
T ss_pred             EEecCCCCCChhhhhhHHHHHHHHHHHhcc-c-CCEEEEEccCCChhHHHHHHHHHHHh
Confidence            9965541    223323   5666678899 7 77777222  2333434444444443

>3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus}

Probab=97.58  E-value=0.00049  Score=57.44  Aligned_cols=117  Identities=14%  Similarity=0.072  Sum_probs=70.5

Q ss_pred             HHHHHHHh---hCCCCCeEEEEcC------cccHhH-HHHHhhCCeEEEEcCCHHHHHHHhcCCCceEEeCCCCchhhhh
Q 037961           22 ELFKLIAS---KTPKRNLAWDVGT------RSGQAA-ASLAQIYQHVIATDTSPKQLKFAIKLPNIRYQLTPTMSITELE   91 (262)
Q Consensus        22 ~~~~~l~~---~~~~~~~vlDvGc------G~G~~~-~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~   91 (262)
                      ++.++|..   ..|.+++|||+|+      -+|.+. +.+.+.+..|+++|+.+-.     .... .++++|      ..
T Consensus        95 qlcqyl~~~~~~vp~gmrVLDLGA~s~kg~APGS~VLr~~~p~g~~VVavDL~~~~-----sda~-~~IqGD------~~  162 (344)
T 3r24_A           95 QLCQYLNTLTLAVPYNMRVIHFGAGSDKGVAPGTAVLRQWLPTGTLLVDSDLNDFV-----SDAD-STLIGD------CA  162 (344)
T ss_dssp             HHHHHHTTSCCCCCTTCEEEEESCCCTTSBCHHHHHHHHHSCTTCEEEEEESSCCB-----CSSS-EEEESC------GG
T ss_pred             HHHHHhccccEeecCCCEEEeCCCCCCCCCCCcHHHHHHhCCCCcEEEEeeCcccc-----cCCC-eEEEcc------cc
Confidence            44555533   1268899999996      567642 2233345689999998542     1223 336665      22


Q ss_pred             hccCCCCceeeEEEcccccc---CC---------hhHHHHHHHHhhcCCCeEEEEEecCCCcccHHHHHhhccc
Q 037961           92 QNVATQSSVDLVTIASALHW---FD---------LPQFYKQVKWVLKKPSGVIAAWTYTMPEINESVGAVFKPF  153 (262)
Q Consensus        92 ~~~~~~~~~D~V~~~~~~~~---~d---------~~~~l~~~~r~Lk~pgG~l~i~~~~~~~~~~~~~~~~~~~  153 (262)
                      ... ..++||+|+|..+-.-   .|         .+.++.-+.++|+ |||.|++=.+.... .+.+.++.+.|
T Consensus       163 ~~~-~~~k~DLVISDMAPNtTG~~D~d~~Rs~~L~ElALdfA~~~Lk-pGGsFvVKVFQGsg-~~~L~~lrk~F  233 (344)
T 3r24_A          163 TVH-TANKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLA-LGGSIAVKITEHSW-NADLYKLMGHF  233 (344)
T ss_dssp             GEE-ESSCEEEEEECCCCTTSCSSCSCCCCCCTHHHHHHHHHHHHEE-EEEEEEEEECSSSC-CHHHHHHHTTE
T ss_pred             ccc-cCCCCCEEEecCCCCcCCccccchhHHHHHHHHHHHHHHHhCc-CCCEEEEEEecCCC-HHHHHHHHhhC
Confidence            222 2478999998544321   22         2336777889999 99999984443332 35566665544

>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}

Probab=97.53  E-value=0.00051  Score=58.73  Aligned_cols=94  Identities=11%  Similarity=0.105  Sum_probs=65.5

Q ss_pred             hhCCCChHHHHHHHHhhCCCCCeEEEEcCcccHhHHHHHhh---CCeEEEEcCCHHHHHHHhcC--CCceEEeCCCCchh
Q 037961           14 VARPNYPKELFKLIASKTPKRNLAWDVGTRSGQAAASLAQI---YQHVIATDTSPKQLKFAIKL--PNIRYQLTPTMSIT   88 (262)
Q Consensus        14 ~~rp~yp~~~~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~--~~~~~~~~~~~~~~   88 (262)
                      .+.|...++.++.|.  ..++.+++|..||.|..|..+++.   ..+|+|+|.++.+++.++++  .++.++.++-..+.
T Consensus        40 ~H~pVLl~Evl~~L~--i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~rL~~~Rv~lv~~nF~~l~  117 (347)
T 3tka_A           40 KHTTVLLDEAVNGLN--IRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAKTIDDPRFSIIHGPFSALG  117 (347)
T ss_dssp             --CCTTTHHHHHHTC--CCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHTTCCCTTEEEEESCGGGHH
T ss_pred             CcccccHHHHHHhhC--CCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHhhcCCcEEEEeCCHHHHH
Confidence            377777778777773  357889999999999999999886   35899999999999998643  46777776611111


Q ss_pred             -hhhhccCCCCceeeEEEccccc
Q 037961           89 -ELEQNVATQSSVDLVTIASALH  110 (262)
Q Consensus        89 -~~~~~~~~~~~~D~V~~~~~~~  110 (262)
                       -+...++. +++|.|+....+-
T Consensus       118 ~~L~~~g~~-~~vDgILfDLGVS  139 (347)
T 3tka_A          118 EYVAERDLI-GKIDGILLDLGVS  139 (347)
T ss_dssp             HHHHHTTCT-TCEEEEEEECSCC
T ss_pred             HHHHhcCCC-CcccEEEECCccC
Confidence             11222222 3699999866553

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=97.39  E-value=0.0011  Score=58.34  Aligned_cols=104  Identities=17%  Similarity=0.120  Sum_probs=72.5

Q ss_pred             CCCCCeEEEEcCcc-cHhHHHHHhh-CC-eEEEEcCCHHHHHHHhcCCCceEEeCCCCc--hhhhhhccCCCCceeeEEE
Q 037961           31 TPKRNLAWDVGTRS-GQAAASLAQI-YQ-HVIATDTSPKQLKFAIKLPNIRYQLTPTMS--ITELEQNVATQSSVDLVTI  105 (262)
Q Consensus        31 ~~~~~~vlDvGcG~-G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~D~V~~  105 (262)
                      ..++.+||-+|||. |.++.++++. |+ +|+++|.+++.++.++++. ...+......  ...+.... ....+|+|+-
T Consensus       183 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lG-a~~i~~~~~~~~~~~~~~~~-~g~g~Dvvid  260 (398)
T 2dph_A          183 VKPGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERLKLLSDAG-FETIDLRNSAPLRDQIDQIL-GKPEVDCGVD  260 (398)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHTTT-CEEEETTSSSCHHHHHHHHH-SSSCEEEEEE
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcC-CcEEcCCCcchHHHHHHHHh-CCCCCCEEEE
Confidence            45788999999987 8888888874 87 8999999999999998763 3444332111  11222221 2236999996


Q ss_pred             cccccc---------CChhHHHHHHHHhhcCCCeEEEEEec
Q 037961          106 ASALHW---------FDLPQFYKQVKWVLKKPSGVIAAWTY  137 (262)
Q Consensus       106 ~~~~~~---------~d~~~~l~~~~r~Lk~pgG~l~i~~~  137 (262)
                      ...-..         .++...++++.++|+ +||+++++..
T Consensus       261 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~-~gG~iv~~G~  300 (398)
T 2dph_A          261 AVGFEAHGLGDEANTETPNGALNSLFDVVR-AGGAIGIPGI  300 (398)
T ss_dssp             CSCTTCBCSGGGTTSBCTTHHHHHHHHHEE-EEEEEECCSC
T ss_pred             CCCCccccccccccccccHHHHHHHHHHHh-cCCEEEEecc
Confidence            554332         234568999999999 9999987553

>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24

Probab=97.38  E-value=0.00051  Score=59.50  Aligned_cols=54  Identities=9%  Similarity=-0.034  Sum_probs=46.2

Q ss_pred             CCeEEEEcCcccHhHHHHHhh--CCeEEEEcCCHHHHHHHhc---CCCceEEeCCCCch
Q 037961           34 RNLAWDVGTRSGQAAASLAQI--YQHVIATDTSPKQLKFAIK---LPNIRYQLTPTMSI   87 (262)
Q Consensus        34 ~~~vlDvGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~---~~~~~~~~~~~~~~   87 (262)
                      +..|||||+|.|.+|..|++.  ..+|+++|+++.++...++   .++++++.+|.+..
T Consensus        59 ~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~~~~~l~ii~~D~l~~  117 (353)
T 1i4w_A           59 ELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFEGSPLQILKRDPYDW  117 (353)
T ss_dssp             TCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTTTSSCEEECSCTTCH
T ss_pred             CCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhccCCCEEEEECCccch
Confidence            588999999999999999986  5799999999999988875   36889998884443

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=97.29  E-value=0.00012  Score=77.96  Aligned_cols=106  Identities=16%  Similarity=0.111  Sum_probs=53.7

Q ss_pred             HHHHHHhhC-CCCCeEEEEcCcccHhHHHHHhh-------CCeEEEEcCCHHHHHHHhcC-C--CceEEeCCCCchhhhh
Q 037961           23 LFKLIASKT-PKRNLAWDVGTRSGQAAASLAQI-------YQHVIATDTSPKQLKFAIKL-P--NIRYQLTPTMSITELE   91 (262)
Q Consensus        23 ~~~~l~~~~-~~~~~vlDvGcG~G~~~~~l~~~-------~~~v~~vD~s~~~~~~a~~~-~--~~~~~~~~~~~~~~~~   91 (262)
                      .++.+.+.. .+..+|||+|.|+|..+..+.+.       ..+++.+|+|+...+.+++. .  .++...-+      .+
T Consensus      1229 ~~~~~~~~~~~~~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~~di~~~~~d------~~ 1302 (2512)
T 2vz8_A         1229 CVDTALENMASPKMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQLHVTQGQWD------PA 1302 (2512)
T ss_dssp             HHHHHHTTSSSSEEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHHHTEEEECCC------SS
T ss_pred             HHHHHHhcCCCCCceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhhccccccccc------cc
Confidence            444444443 35678999999999887766543       23789999998887777653 1  11111001      11


Q ss_pred             h-ccCCCCceeeEEEccccccC-ChhHHHHHHHHhhcCCCeEEEEE
Q 037961           92 Q-NVATQSSVDLVTIASALHWF-DLPQFYKQVKWVLKKPSGVIAAW  135 (262)
Q Consensus        92 ~-~~~~~~~~D~V~~~~~~~~~-d~~~~l~~~~r~Lk~pgG~l~i~  135 (262)
                      + .++..++||+|++.+.+|-. +....+++++++|| |||.+++.
T Consensus      1303 ~~~~~~~~~ydlvia~~vl~~t~~~~~~l~~~~~lL~-p~G~l~~~ 1347 (2512)
T 2vz8_A         1303 NPAPGSLGKADLLVCNCALATLGDPAVAVGNMAATLK-EGGFLLLH 1347 (2512)
T ss_dssp             CCCC-----CCEEEEECC---------------------CCEEEEE
T ss_pred             ccccCCCCceeEEEEcccccccccHHHHHHHHHHhcC-CCcEEEEE
Confidence            1 12245679999999999987 88899999999999 99998874

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=97.23  E-value=0.0019  Score=56.75  Aligned_cols=104  Identities=17%  Similarity=0.108  Sum_probs=72.9

Q ss_pred             CCCCCeEEEEcCcc-cHhHHHHHhh-CC-eEEEEcCCHHHHHHHhcCCCceEEeCCCCc--hhhhhhccCCCCceeeEEE
Q 037961           31 TPKRNLAWDVGTRS-GQAAASLAQI-YQ-HVIATDTSPKQLKFAIKLPNIRYQLTPTMS--ITELEQNVATQSSVDLVTI  105 (262)
Q Consensus        31 ~~~~~~vlDvGcG~-G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~D~V~~  105 (262)
                      ..++.+||-+|||. |.++.++++. |+ +|+++|.+++-++.++++. ...+......  ...+.... ....+|+|+-
T Consensus       183 ~~~g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~~~a~~lG-a~~i~~~~~~~~~~~v~~~t-~g~g~Dvvid  260 (398)
T 1kol_A          183 VGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQG-FEIADLSLDTPLHEQIAALL-GEPEVDCAVD  260 (398)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTT-CEEEETTSSSCHHHHHHHHH-SSSCEEEEEE
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHcC-CcEEccCCcchHHHHHHHHh-CCCCCCEEEE
Confidence            45788999999986 8888888875 77 7999999999999998763 3444322100  11122221 2346999995


Q ss_pred             ccc----------cccCChhHHHHHHHHhhcCCCeEEEEEec
Q 037961          106 ASA----------LHWFDLPQFYKQVKWVLKKPSGVIAAWTY  137 (262)
Q Consensus       106 ~~~----------~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~  137 (262)
                      ...          .|+.++...++++.++|+ +||+++++..
T Consensus       261 ~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~G~iv~~G~  301 (398)
T 1kol_A          261 AVGFEARGHGHEGAKHEAPATVLNSLMQVTR-VAGKIGIPGL  301 (398)
T ss_dssp             CCCTTCBCSSTTGGGSBCTTHHHHHHHHHEE-EEEEEEECSC
T ss_pred             CCCCcccccccccccccchHHHHHHHHHHHh-cCCEEEEecc
Confidence            443          344566778999999999 9999988653

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=97.15  E-value=0.0027  Score=49.89  Aligned_cols=98  Identities=17%  Similarity=0.109  Sum_probs=64.2

Q ss_pred             CCCCCeEEEEcC--cccHhHHHHHh-hCCeEEEEcCCHHHHHHHhcCCCceEEeCCCCch-hhhhhccCCCCceeeEEEc
Q 037961           31 TPKRNLAWDVGT--RSGQAAASLAQ-IYQHVIATDTSPKQLKFAIKLPNIRYQLTPTMSI-TELEQNVATQSSVDLVTIA  106 (262)
Q Consensus        31 ~~~~~~vlDvGc--G~G~~~~~l~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~D~V~~~  106 (262)
                      ..++.+||..|+  |.|..+..++. .|++|+++|.+++.++.+++.............. ..+... .....+|+|+.+
T Consensus        36 ~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~-~~~~~~D~vi~~  114 (198)
T 1pqw_A           36 LSPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSRLGVEYVGDSRSVDFADEILEL-TDGYGVDVVLNS  114 (198)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHTTCCSEEEETTCSTHHHHHHHH-TTTCCEEEEEEC
T ss_pred             CCCCCEEEEeeCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCEEeeCCcHHHHHHHHHH-hCCCCCeEEEEC
Confidence            357889999995  45666666655 5899999999999888887653222222111111 112221 123469999965


Q ss_pred             cccccCChhHHHHHHHHhhcCCCeEEEEEe
Q 037961          107 SALHWFDLPQFYKQVKWVLKKPSGVIAAWT  136 (262)
Q Consensus       107 ~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~  136 (262)
                      ..      ...++.+.+.|+ |||+++++.
T Consensus       115 ~g------~~~~~~~~~~l~-~~G~~v~~g  137 (198)
T 1pqw_A          115 LA------GEAIQRGVQILA-PGGRFIELG  137 (198)
T ss_dssp             CC------THHHHHHHHTEE-EEEEEEECS
T ss_pred             Cc------hHHHHHHHHHhc-cCCEEEEEc
Confidence            43      357889999999 999998854

>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157}

Probab=97.14  E-value=0.0022  Score=56.13  Aligned_cols=78  Identities=9%  Similarity=0.007  Sum_probs=57.4

Q ss_pred             CeEEEEcCcccHhHHHHHhhCCe-EEEEcCCHHHHHHHhc-CCCceEEeCC--CCchhhhhhccCCCCceeeEEEccccc
Q 037961           35 NLAWDVGTRSGQAAASLAQIYQH-VIATDTSPKQLKFAIK-LPNIRYQLTP--TMSITELEQNVATQSSVDLVTIASALH  110 (262)
Q Consensus        35 ~~vlDvGcG~G~~~~~l~~~~~~-v~~vD~s~~~~~~a~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~D~V~~~~~~~  110 (262)
                      .+++|+-||.|.++..+.+.|.+ +.++|+++..++..+. .++..++.+|  .+...++....+..+.+|+|+....++
T Consensus         3 ~~vidLFsG~GGlslG~~~aG~~~v~avE~d~~a~~t~~~N~~~~~~~~~DI~~~~~~~~~~~~~~~~~~D~i~ggpPCQ   82 (376)
T 3g7u_A            3 LNVIDLFSGVGGLSLGAARAGFDVKMAVEIDQHAINTHAINFPRSLHVQEDVSLLNAEIIKGFFKNDMPIDGIIGGPPCQ   82 (376)
T ss_dssp             CEEEEETCTTSHHHHHHHHHTCEEEEEECSCHHHHHHHHHHCTTSEEECCCGGGCCHHHHHHHHCSCCCCCEEEECCCCC
T ss_pred             CeEEEEccCcCHHHHHHHHCCCcEEEEEeCCHHHHHHHHHhCCCCceEecChhhcCHHHHHhhcccCCCeeEEEecCCCC
Confidence            46899999999999999998886 4599999999987775 4677777777  332222222222456799999987766


Q ss_pred             cC
Q 037961          111 WF  112 (262)
Q Consensus       111 ~~  112 (262)
                      -+
T Consensus        83 ~f   84 (376)
T 3g7u_A           83 GF   84 (376)
T ss_dssp             TT
T ss_pred             Cc
Confidence            44

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=97.07  E-value=0.0027  Score=55.17  Aligned_cols=99  Identities=20%  Similarity=0.148  Sum_probs=68.8

Q ss_pred             CCCCCeEEEEcCcc-cHhHHHHHhh-CC-eEEEEcCCHHHHHHHhcCCCceEEeCCCCch-hhhhhccCCCCceeeEEEc
Q 037961           31 TPKRNLAWDVGTRS-GQAAASLAQI-YQ-HVIATDTSPKQLKFAIKLPNIRYQLTPTMSI-TELEQNVATQSSVDLVTIA  106 (262)
Q Consensus        31 ~~~~~~vlDvGcG~-G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~D~V~~~  106 (262)
                      ..++.+||-+|||. |.++.++++. |+ +|+++|.+++.++.++++..-.++....... ..+...  .++.+|+|+-.
T Consensus       188 ~~~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~--~~gg~D~vid~  265 (371)
T 1f8f_A          188 VTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATHVINSKTQDPVAAIKEI--TDGGVNFALES  265 (371)
T ss_dssp             CCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHH--TTSCEEEEEEC
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCCEEecCCccCHHHHHHHh--cCCCCcEEEEC
Confidence            35788999999987 8888888874 77 6999999999999988753222333221111 112222  23379999854


Q ss_pred             cccccCChhHHHHHHHHhhcCCCeEEEEEec
Q 037961          107 SALHWFDLPQFYKQVKWVLKKPSGVIAAWTY  137 (262)
Q Consensus       107 ~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~  137 (262)
                      ..     ....++.+.+.|+ +||+++++..
T Consensus       266 ~g-----~~~~~~~~~~~l~-~~G~iv~~G~  290 (371)
T 1f8f_A          266 TG-----SPEILKQGVDALG-ILGKIAVVGA  290 (371)
T ss_dssp             SC-----CHHHHHHHHHTEE-EEEEEEECCC
T ss_pred             CC-----CHHHHHHHHHHHh-cCCEEEEeCC
Confidence            33     2467899999999 9999998654

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=96.96  E-value=0.0046  Score=52.98  Aligned_cols=99  Identities=18%  Similarity=0.136  Sum_probs=69.5

Q ss_pred             CCCCCeEEEEcCcc-cHhHHHHHhh-CCeEEEEcCCHHHHHHHhcCCCceEEeCCCCch-hhhhhccCCCCceeeEEEcc
Q 037961           31 TPKRNLAWDVGTRS-GQAAASLAQI-YQHVIATDTSPKQLKFAIKLPNIRYQLTPTMSI-TELEQNVATQSSVDLVTIAS  107 (262)
Q Consensus        31 ~~~~~~vlDvGcG~-G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~D~V~~~~  107 (262)
                      ..++.+||-.|+|. |.++.++++. |++|+++|.+++.++.++++..-..+....... ..+...   .+.+|+|+-..
T Consensus       164 ~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~~---~g~~d~vid~~  240 (340)
T 3s2e_A          164 TRPGQWVVISGIGGLGHVAVQYARAMGLRVAAVDIDDAKLNLARRLGAEVAVNARDTDPAAWLQKE---IGGAHGVLVTA  240 (340)
T ss_dssp             CCTTSEEEEECCSTTHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHH---HSSEEEEEESS
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCCEEEeCCCcCHHHHHHHh---CCCCCEEEEeC
Confidence            35788899999986 8888888874 889999999999999998864333333221111 112221   23689988542


Q ss_pred             ccccCChhHHHHHHHHhhcCCCeEEEEEecC
Q 037961          108 ALHWFDLPQFYKQVKWVLKKPSGVIAAWTYT  138 (262)
Q Consensus       108 ~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~~  138 (262)
                      .     -...++.+.++|+ |||++++....
T Consensus       241 g-----~~~~~~~~~~~l~-~~G~iv~~G~~  265 (340)
T 3s2e_A          241 V-----SPKAFSQAIGMVR-RGGTIALNGLP  265 (340)
T ss_dssp             C-----CHHHHHHHHHHEE-EEEEEEECSCC
T ss_pred             C-----CHHHHHHHHHHhc-cCCEEEEeCCC
Confidence            2     2567899999999 99999986543

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=96.80  E-value=0.0063  Score=52.43  Aligned_cols=100  Identities=16%  Similarity=0.138  Sum_probs=68.6

Q ss_pred             CCCCCeEEEEcCcc-cHhHHHHHhh-CC-eEEEEcCCHHHHHHHhcCCCceEEeCCCCch-hhhhhccCCCCceeeEEEc
Q 037961           31 TPKRNLAWDVGTRS-GQAAASLAQI-YQ-HVIATDTSPKQLKFAIKLPNIRYQLTPTMSI-TELEQNVATQSSVDLVTIA  106 (262)
Q Consensus        31 ~~~~~~vlDvGcG~-G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~D~V~~~  106 (262)
                      ..++.+||-+|+|. |.++.++++. |+ +|+++|.+++-++.++++....++....... ..+.... ....+|+|+-.
T Consensus       164 ~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~v~~~t-~g~g~D~v~d~  242 (352)
T 3fpc_A          164 IKLGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALEYGATDIINYKNGDIVEQILKAT-DGKGVDKVVIA  242 (352)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHHHHHHHHHHTCCEEECGGGSCHHHHHHHHT-TTCCEEEEEEC
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCceEEcCCCcCHHHHHHHHc-CCCCCCEEEEC
Confidence            35788899999986 8888888875 77 8999999999999888753323332221111 1122221 23469999954


Q ss_pred             cccccCChhHHHHHHHHhhcCCCeEEEEEec
Q 037961          107 SALHWFDLPQFYKQVKWVLKKPSGVIAAWTY  137 (262)
Q Consensus       107 ~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~  137 (262)
                      ..     -...++.+.+.|+ |||++++...
T Consensus       243 ~g-----~~~~~~~~~~~l~-~~G~~v~~G~  267 (352)
T 3fpc_A          243 GG-----DVHTFAQAVKMIK-PGSDIGNVNY  267 (352)
T ss_dssp             SS-----CTTHHHHHHHHEE-EEEEEEECCC
T ss_pred             CC-----ChHHHHHHHHHHh-cCCEEEEecc
Confidence            32     2367899999999 9999998654

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=96.77  E-value=0.0055  Score=53.10  Aligned_cols=100  Identities=15%  Similarity=0.008  Sum_probs=68.8

Q ss_pred             CCCCCeEEEEcCcc-cHhHHHHHhh-CCeEEEEcCCHHHHHHHhcCCCceEEeCCCCch-hhhhhccCCCCceeeEEEcc
Q 037961           31 TPKRNLAWDVGTRS-GQAAASLAQI-YQHVIATDTSPKQLKFAIKLPNIRYQLTPTMSI-TELEQNVATQSSVDLVTIAS  107 (262)
Q Consensus        31 ~~~~~~vlDvGcG~-G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~D~V~~~~  107 (262)
                      .+++.+||-+|+|. |.++.++++. |++|+++|.+++-++.+++...-..+..+.... ..+.... ....+|+|+-..
T Consensus       187 ~~~g~~VlV~G~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~v~~~~-~g~g~D~vid~~  265 (363)
T 3uog_A          187 LRAGDRVVVQGTGGVALFGLQIAKATGAEVIVTSSSREKLDRAFALGADHGINRLEEDWVERVYALT-GDRGADHILEIA  265 (363)
T ss_dssp             CCTTCEEEEESSBHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHH-TTCCEEEEEEET
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCchhHHHHHHcCCCEEEcCCcccHHHHHHHHh-CCCCceEEEECC
Confidence            35788999999886 8888888774 899999999999999888753323333221111 1122221 234799999654


Q ss_pred             ccccCChhHHHHHHHHhhcCCCeEEEEEecC
Q 037961          108 ALHWFDLPQFYKQVKWVLKKPSGVIAAWTYT  138 (262)
Q Consensus       108 ~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~~  138 (262)
                      .      ...++.+.+.|+ |||++++....
T Consensus       266 g------~~~~~~~~~~l~-~~G~iv~~G~~  289 (363)
T 3uog_A          266 G------GAGLGQSLKAVA-PDGRISVIGVL  289 (363)
T ss_dssp             T------SSCHHHHHHHEE-EEEEEEEECCC
T ss_pred             C------hHHHHHHHHHhh-cCCEEEEEecC
Confidence            4      245788899999 99999986643

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=96.75  E-value=0.008  Score=51.89  Aligned_cols=99  Identities=11%  Similarity=0.077  Sum_probs=67.6

Q ss_pred             CCCCCeEEEEcCcc-cHhHHHHHhh-CC-eEEEEcCCHHHHHHHhcCCCceEEeCCC---Cc-hhhhhhccCCCCceeeE
Q 037961           31 TPKRNLAWDVGTRS-GQAAASLAQI-YQ-HVIATDTSPKQLKFAIKLPNIRYQLTPT---MS-ITELEQNVATQSSVDLV  103 (262)
Q Consensus        31 ~~~~~~vlDvGcG~-G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~D~V  103 (262)
                      ..++.+||-+|+|. |.++.++++. |+ +|+++|.++.-++.+++...-..+..+.   .. ...+.... . ..+|+|
T Consensus       169 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~i~~~~-~-~g~D~v  246 (356)
T 1pl8_A          169 VTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQL-G-CKPEVT  246 (356)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHH-T-SCCSEE
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEEcCcccccchHHHHHHHHh-C-CCCCEE
Confidence            46788999999986 8888888874 77 8999999999999888763222222110   00 01111111 2 569999


Q ss_pred             EEccccccCChhHHHHHHHHhhcCCCeEEEEEec
Q 037961          104 TIASALHWFDLPQFYKQVKWVLKKPSGVIAAWTY  137 (262)
Q Consensus       104 ~~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~  137 (262)
                      +-...     ....++.+.++|+ |||+++++..
T Consensus       247 id~~g-----~~~~~~~~~~~l~-~~G~iv~~G~  274 (356)
T 1pl8_A          247 IECTG-----AEASIQAGIYATR-SGGTLVLVGL  274 (356)
T ss_dssp             EECSC-----CHHHHHHHHHHSC-TTCEEEECSC
T ss_pred             EECCC-----ChHHHHHHHHHhc-CCCEEEEEec
Confidence            85433     2457889999999 9999998654

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=96.66  E-value=0.011  Score=51.38  Aligned_cols=102  Identities=14%  Similarity=0.108  Sum_probs=69.3

Q ss_pred             hCCCCCeEEEEcCcc-cHhHHHHHhh-CC-eEEEEcCCHHHHHHHhcCCCceEEeCCCCch-hhhhh-ccCCCCceeeEE
Q 037961           30 KTPKRNLAWDVGTRS-GQAAASLAQI-YQ-HVIATDTSPKQLKFAIKLPNIRYQLTPTMSI-TELEQ-NVATQSSVDLVT  104 (262)
Q Consensus        30 ~~~~~~~vlDvGcG~-G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~D~V~  104 (262)
                      ...++.+||-.|+|. |.++.++++. |+ +|+++|.++.-++.++++..-..+....... ..+.. .....+.+|+|+
T Consensus       179 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~i~~~~~~~~gg~Dvvi  258 (370)
T 4ej6_A          179 GIKAGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEEVGATATVDPSAGDVVEAIAGPVGLVPGGVDVVI  258 (370)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTCSEEECTTSSCHHHHHHSTTSSSTTCEEEEE
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCCEEECCCCcCHHHHHHhhhhccCCCCCEEE
Confidence            346788899999986 8888888874 77 8999999999999888753222332211111 11111 012344799999


Q ss_pred             EccccccCChhHHHHHHHHhhcCCCeEEEEEec
Q 037961          105 IASALHWFDLPQFYKQVKWVLKKPSGVIAAWTY  137 (262)
Q Consensus       105 ~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~  137 (262)
                      -...     ....++.+.++|+ +||++++...
T Consensus       259 d~~G-----~~~~~~~~~~~l~-~~G~vv~~G~  285 (370)
T 4ej6_A          259 ECAG-----VAETVKQSTRLAK-AGGTVVILGV  285 (370)
T ss_dssp             ECSC-----CHHHHHHHHHHEE-EEEEEEECSC
T ss_pred             ECCC-----CHHHHHHHHHHhc-cCCEEEEEec
Confidence            5432     2467899999999 9999998654

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=96.65  E-value=0.0094  Score=50.93  Aligned_cols=98  Identities=11%  Similarity=0.034  Sum_probs=67.5

Q ss_pred             CCCCCeEEEEcC--cccHhHHHHHh-hCCeEEEEcCCHHHHHHH-hcCCCceEEeCCCCch-hhhhhccCCCCceeeEEE
Q 037961           31 TPKRNLAWDVGT--RSGQAAASLAQ-IYQHVIATDTSPKQLKFA-IKLPNIRYQLTPTMSI-TELEQNVATQSSVDLVTI  105 (262)
Q Consensus        31 ~~~~~~vlDvGc--G~G~~~~~l~~-~~~~v~~vD~s~~~~~~a-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~D~V~~  105 (262)
                      ..++.+||-.|+  |.|..+..+++ .|++|++++.+++-++.+ ++......+....... ..+....  .+.+|+|+-
T Consensus       147 ~~~g~~vlI~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~~d~vi~  224 (336)
T 4b7c_A          147 PKNGETVVISGAAGAVGSVAGQIARLKGCRVVGIAGGAEKCRFLVEELGFDGAIDYKNEDLAAGLKREC--PKGIDVFFD  224 (336)
T ss_dssp             CCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCCSEEEETTTSCHHHHHHHHC--TTCEEEEEE
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCCCEEEECCCHHHHHHHHHhc--CCCceEEEE
Confidence            457899999998  45778777776 488999999999999988 6653222232221111 1222222  357999986


Q ss_pred             ccccccCChhHHHHHHHHhhcCCCeEEEEEec
Q 037961          106 ASALHWFDLPQFYKQVKWVLKKPSGVIAAWTY  137 (262)
Q Consensus       106 ~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~  137 (262)
                      +..      ...+..+.+.|+ +||++++...
T Consensus       225 ~~g------~~~~~~~~~~l~-~~G~iv~~G~  249 (336)
T 4b7c_A          225 NVG------GEILDTVLTRIA-FKARIVLCGA  249 (336)
T ss_dssp             SSC------HHHHHHHHTTEE-EEEEEEECCC
T ss_pred             CCC------cchHHHHHHHHh-hCCEEEEEee
Confidence            544      247889999999 9999998553

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=96.65  E-value=0.01  Score=50.65  Aligned_cols=99  Identities=16%  Similarity=0.115  Sum_probs=67.6

Q ss_pred             CCCCCeEEEEcC-c-ccHhHHHHHh-hCCeEEEEcCCHHHHHHHhcCCCceEEeCCCCch-hhhhhccCCCCceeeEEEc
Q 037961           31 TPKRNLAWDVGT-R-SGQAAASLAQ-IYQHVIATDTSPKQLKFAIKLPNIRYQLTPTMSI-TELEQNVATQSSVDLVTIA  106 (262)
Q Consensus        31 ~~~~~~vlDvGc-G-~G~~~~~l~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~D~V~~~  106 (262)
                      ..++.+||-.|+ | .|..+.++++ .|++|++++.+++-++.+++...-..+....... ..+.... ....+|+|+-+
T Consensus       146 ~~~g~~vlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga~~~~~~~~~~~~~~~~~~~-~~~g~D~vid~  224 (334)
T 3qwb_A          146 VKKGDYVLLFAAAGGVGLILNQLLKMKGAHTIAVASTDEKLKIAKEYGAEYLINASKEDILRQVLKFT-NGKGVDASFDS  224 (334)
T ss_dssp             CCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETTTSCHHHHHHHHT-TTSCEEEEEEC
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCcEEEeCCCchHHHHHHHHh-CCCCceEEEEC
Confidence            357889999994 3 4777777776 4899999999999999888764333333221111 1122221 23469999965


Q ss_pred             cccccCChhHHHHHHHHhhcCCCeEEEEEec
Q 037961          107 SALHWFDLPQFYKQVKWVLKKPSGVIAAWTY  137 (262)
Q Consensus       107 ~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~  137 (262)
                      ..      ...++.+.+.|+ +||++++...
T Consensus       225 ~g------~~~~~~~~~~l~-~~G~iv~~G~  248 (334)
T 3qwb_A          225 VG------KDTFEISLAALK-RKGVFVSFGN  248 (334)
T ss_dssp             CG------GGGHHHHHHHEE-EEEEEEECCC
T ss_pred             CC------hHHHHHHHHHhc-cCCEEEEEcC
Confidence            44      256888999999 9999998654

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=96.61  E-value=0.0028  Score=54.21  Aligned_cols=57  Identities=14%  Similarity=0.142  Sum_probs=49.7

Q ss_pred             CChHHHHHHHHhh-CCCCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhcC
Q 037961           18 NYPKELFKLIASK-TPKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKL   74 (262)
Q Consensus        18 ~yp~~~~~~l~~~-~~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~   74 (262)
                      ..|.++++.++.. ..++..|||--||+|+.+......+.+.+|+|+++..++.++++
T Consensus       236 ~kp~~l~~~~i~~~~~~~~~VlDpF~GsGtt~~aa~~~gr~~ig~e~~~~~~~~~~~r  293 (323)
T 1boo_A          236 RFPAKLPEFFIRMLTEPDDLVVDIFGGSNTTGLVAERESRKWISFEMKPEYVAASAFR  293 (323)
T ss_dssp             CCCTHHHHHHHHHHCCTTCEEEETTCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHGG
T ss_pred             cCCHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHcCCCEEEEeCCHHHHHHHHHH
Confidence            4577888887764 46889999999999999999999999999999999999998864

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=96.60  E-value=0.012  Score=50.13  Aligned_cols=98  Identities=14%  Similarity=0.057  Sum_probs=65.5

Q ss_pred             CCCCCeEEEEcC--cccHhHHHHHh-hCCeEEEEcCCHHHHHHHhcCCCceEEeCCC-Cch-hhhhhccCCCCceeeEEE
Q 037961           31 TPKRNLAWDVGT--RSGQAAASLAQ-IYQHVIATDTSPKQLKFAIKLPNIRYQLTPT-MSI-TELEQNVATQSSVDLVTI  105 (262)
Q Consensus        31 ~~~~~~vlDvGc--G~G~~~~~l~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~D~V~~  105 (262)
                      ..++.+||-.||  |.|..+..++. .|++|+++|.+++.++.+++........... ... ..+...  ..+.+|+|+.
T Consensus       143 ~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~--~~~~~d~vi~  220 (333)
T 1v3u_A          143 VKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQIGFDAAFNYKTVNSLEEALKKA--SPDGYDCYFD  220 (333)
T ss_dssp             CCSSCEEEEESTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETTSCSCHHHHHHHH--CTTCEEEEEE
T ss_pred             CCCCCEEEEecCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcCCcEEEecCCHHHHHHHHHHH--hCCCCeEEEE
Confidence            357889999998  45777766665 5899999999999988886652212222111 111 112222  1257999997


Q ss_pred             ccccccCChhHHHHHHHHhhcCCCeEEEEEec
Q 037961          106 ASALHWFDLPQFYKQVKWVLKKPSGVIAAWTY  137 (262)
Q Consensus       106 ~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~  137 (262)
                      +..-      ..++.+.+.|+ +||+++++..
T Consensus       221 ~~g~------~~~~~~~~~l~-~~G~~v~~g~  245 (333)
T 1v3u_A          221 NVGG------EFLNTVLSQMK-DFGKIAICGA  245 (333)
T ss_dssp             SSCH------HHHHHHHTTEE-EEEEEEECCC
T ss_pred             CCCh------HHHHHHHHHHh-cCCEEEEEec
Confidence            6552      45788999999 9999988654

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=96.58  E-value=0.0082  Score=51.45  Aligned_cols=99  Identities=14%  Similarity=0.100  Sum_probs=65.3

Q ss_pred             CCCCeEEEEcCc--ccHhHHHHHh-hCCeEEEEcCCHHHHHHHhcCCCceEEeCCCCch-hhhhhccCCCCceeeEEEcc
Q 037961           32 PKRNLAWDVGTR--SGQAAASLAQ-IYQHVIATDTSPKQLKFAIKLPNIRYQLTPTMSI-TELEQNVATQSSVDLVTIAS  107 (262)
Q Consensus        32 ~~~~~vlDvGcG--~G~~~~~l~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~D~V~~~~  107 (262)
                      +++.+||-.|+|  .|..+..+++ .|++|+++|.+++-++.+++...-..+....... ..+.... ....+|+|+-+.
T Consensus       143 ~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~lga~~~~~~~~~~~~~~~~~~~-~~~g~Dvvid~~  221 (340)
T 3gms_A          143 QRNDVLLVNACGSAIGHLFAQLSQILNFRLIAVTRNNKHTEELLRLGAAYVIDTSTAPLYETVMELT-NGIGADAAIDSI  221 (340)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTCSEEEETTTSCHHHHHHHHT-TTSCEEEEEESS
T ss_pred             CCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhCCCcEEEeCCcccHHHHHHHHh-CCCCCcEEEECC
Confidence            578899999997  5777777776 5899999999999888888753323332221111 1122221 234799998654


Q ss_pred             ccccCChhHHHHHHHHhhcCCCeEEEEEecC
Q 037961          108 ALHWFDLPQFYKQVKWVLKKPSGVIAAWTYT  138 (262)
Q Consensus       108 ~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~~  138 (262)
                      .-      ....+..+.|+ +||++++....
T Consensus       222 g~------~~~~~~~~~l~-~~G~iv~~G~~  245 (340)
T 3gms_A          222 GG------PDGNELAFSLR-PNGHFLTIGLL  245 (340)
T ss_dssp             CH------HHHHHHHHTEE-EEEEEEECCCT
T ss_pred             CC------hhHHHHHHHhc-CCCEEEEEeec
Confidence            32      22344558999 99999986543

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}

Probab=96.57  E-value=0.017  Score=50.00  Aligned_cols=95  Identities=16%  Similarity=0.127  Sum_probs=66.7

Q ss_pred             CCCeEEEEc-Ccc-cHhHHHHHhh--CCeEEEEcCCHHHHHHHhcCCCceEEeCCCCchhhhhhccCCCCceeeEEEccc
Q 037961           33 KRNLAWDVG-TRS-GQAAASLAQI--YQHVIATDTSPKQLKFAIKLPNIRYQLTPTMSITELEQNVATQSSVDLVTIASA  108 (262)
Q Consensus        33 ~~~~vlDvG-cG~-G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~  108 (262)
                      ++.+||=.| +|. |.++.++++.  +++|+++|.+++-++.+++...-.++....-....+..+  ..+.+|+|+-+..
T Consensus       171 ~g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~~~~~~~~~lGad~vi~~~~~~~~~v~~~--~~~g~Dvvid~~g  248 (363)
T 4dvj_A          171 AAPAILIVGGAGGVGSIAVQIARQRTDLTVIATASRPETQEWVKSLGAHHVIDHSKPLAAEVAAL--GLGAPAFVFSTTH  248 (363)
T ss_dssp             SEEEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHTTCSEEECTTSCHHHHHHTT--CSCCEEEEEECSC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHh--cCCCceEEEECCC
Confidence            567889998 664 8999999884  789999999999999998763323332221001122222  3457999985432


Q ss_pred             cccCChhHHHHHHHHhhcCCCeEEEEE
Q 037961          109 LHWFDLPQFYKQVKWVLKKPSGVIAAW  135 (262)
Q Consensus       109 ~~~~d~~~~l~~~~r~Lk~pgG~l~i~  135 (262)
                           -...++.+.++|+ +||++++.
T Consensus       249 -----~~~~~~~~~~~l~-~~G~iv~~  269 (363)
T 4dvj_A          249 -----TDKHAAEIADLIA-PQGRFCLI  269 (363)
T ss_dssp             -----HHHHHHHHHHHSC-TTCEEEEC
T ss_pred             -----chhhHHHHHHHhc-CCCEEEEE
Confidence                 3457899999999 99999985

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*

Probab=96.56  E-value=0.01  Score=50.45  Aligned_cols=100  Identities=12%  Similarity=0.083  Sum_probs=67.7

Q ss_pred             CCCCCeEEEEc-Cc-ccHhHHHHHh-hCCeEEEEcCCHHHHHHHhcCCCceEEeCCCCch-hhhhhccCCCCceeeEEEc
Q 037961           31 TPKRNLAWDVG-TR-SGQAAASLAQ-IYQHVIATDTSPKQLKFAIKLPNIRYQLTPTMSI-TELEQNVATQSSVDLVTIA  106 (262)
Q Consensus        31 ~~~~~~vlDvG-cG-~G~~~~~l~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~D~V~~~  106 (262)
                      ..++.+||-.| +| .|..+..+++ .|++|++++.+++-++.+++...-..+....... ..+.+. .....+|+|+-+
T Consensus       138 ~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~-~~~~g~Dvvid~  216 (325)
T 3jyn_A          138 VKPGEIILFHAAAGGVGSLACQWAKALGAKLIGTVSSPEKAAHAKALGAWETIDYSHEDVAKRVLEL-TDGKKCPVVYDG  216 (325)
T ss_dssp             CCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHH-TTTCCEEEEEES
T ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCCEEEeCCCccHHHHHHHH-hCCCCceEEEEC
Confidence            35788999998 44 4888887776 4899999999999999888753223333221111 112222 133479999965


Q ss_pred             cccccCChhHHHHHHHHhhcCCCeEEEEEecC
Q 037961          107 SALHWFDLPQFYKQVKWVLKKPSGVIAAWTYT  138 (262)
Q Consensus       107 ~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~~  138 (262)
                      ..-      ..+..+.+.|+ +||++++....
T Consensus       217 ~g~------~~~~~~~~~l~-~~G~iv~~g~~  241 (325)
T 3jyn_A          217 VGQ------DTWLTSLDSVA-PRGLVVSFGNA  241 (325)
T ss_dssp             SCG------GGHHHHHTTEE-EEEEEEECCCT
T ss_pred             CCh------HHHHHHHHHhc-CCCEEEEEecC
Confidence            442      46788999999 99999986543

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=96.54  E-value=0.016  Score=49.79  Aligned_cols=100  Identities=11%  Similarity=0.060  Sum_probs=67.2

Q ss_pred             CCCCCeEEEEcCcc-cHhHHHHHh-hCCeEEEEcCCHHHHHHHhcCCCceEEeCCC-Cc-hhhhhhccCC---CCceeeE
Q 037961           31 TPKRNLAWDVGTRS-GQAAASLAQ-IYQHVIATDTSPKQLKFAIKLPNIRYQLTPT-MS-ITELEQNVAT---QSSVDLV  103 (262)
Q Consensus        31 ~~~~~~vlDvGcG~-G~~~~~l~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~-~~-~~~~~~~~~~---~~~~D~V  103 (262)
                      ..++.+||-+|+|. |.++.++++ .|++|+++|.+++.++.+++...-..+.... .. ...+.... .   ...+|+|
T Consensus       166 ~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~~~~~~~~~~~~~i~~~~-~~~~g~g~D~v  244 (352)
T 1e3j_A          166 VQLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERI-RSAIGDLPNVT  244 (352)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHH-HHHSSSCCSEE
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhCCCEEEcCcccccHHHHHHHHh-ccccCCCCCEE
Confidence            46788999999986 788888877 4889999999999999888753222222110 00 01111111 1   2469999


Q ss_pred             EEccccccCChhHHHHHHHHhhcCCCeEEEEEec
Q 037961          104 TIASALHWFDLPQFYKQVKWVLKKPSGVIAAWTY  137 (262)
Q Consensus       104 ~~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~  137 (262)
                      +-...     ....++.+.++|+ +||+++++..
T Consensus       245 id~~g-----~~~~~~~~~~~l~-~~G~iv~~G~  272 (352)
T 1e3j_A          245 IDCSG-----NEKCITIGINITR-TGGTLMLVGM  272 (352)
T ss_dssp             EECSC-----CHHHHHHHHHHSC-TTCEEEECSC
T ss_pred             EECCC-----CHHHHHHHHHHHh-cCCEEEEEec
Confidence            85433     2457889999999 9999998654

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A*

Probab=96.49  E-value=0.0095  Score=51.11  Aligned_cols=96  Identities=18%  Similarity=0.130  Sum_probs=66.2

Q ss_pred             CCCeEEEEcCcc-cHhHHHHHh-hCC-eEEEEcCCHHHHHHHhcCCCceEEeCCCCch-hhhhhccCCCCceeeEEEccc
Q 037961           33 KRNLAWDVGTRS-GQAAASLAQ-IYQ-HVIATDTSPKQLKFAIKLPNIRYQLTPTMSI-TELEQNVATQSSVDLVTIASA  108 (262)
Q Consensus        33 ~~~~vlDvGcG~-G~~~~~l~~-~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~D~V~~~~~  108 (262)
                      ++.+||-+|+|. |..+.++++ .|+ +|+++|.+++-++.+++. .-..+....... ..+....  ...+|+|+-...
T Consensus       164 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~l-a~~v~~~~~~~~~~~~~~~~--~~g~D~vid~~g  240 (343)
T 2dq4_A          164 SGKSVLITGAGPIGLMAAMVVRASGAGPILVSDPNPYRLAFARPY-ADRLVNPLEEDLLEVVRRVT--GSGVEVLLEFSG  240 (343)
T ss_dssp             TTSCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHGGGTTT-CSEEECTTTSCHHHHHHHHH--SSCEEEEEECSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-HHhccCcCccCHHHHHHHhc--CCCCCEEEECCC
Confidence            778899999875 777777776 488 999999999988888776 333332221111 1122222  346999985433


Q ss_pred             cccCChhHHHHHHHHhhcCCCeEEEEEec
Q 037961          109 LHWFDLPQFYKQVKWVLKKPSGVIAAWTY  137 (262)
Q Consensus       109 ~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~  137 (262)
                           ....++.+.++|+ +||+++++..
T Consensus       241 -----~~~~~~~~~~~l~-~~G~iv~~g~  263 (343)
T 2dq4_A          241 -----NEAAIHQGLMALI-PGGEARILGI  263 (343)
T ss_dssp             -----CHHHHHHHHHHEE-EEEEEEECCC
T ss_pred             -----CHHHHHHHHHHHh-cCCEEEEEec
Confidence                 2457889999999 9999988654

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=96.48  E-value=0.0062  Score=52.98  Aligned_cols=96  Identities=20%  Similarity=0.179  Sum_probs=67.1

Q ss_pred             hCCCCCeEEEEcCcc-cHhHHHHHh-hCCeEEEEcCCHHHHHHHhcCCCceEEeCCCCchhh-hhhccCCCCceeeEEEc
Q 037961           30 KTPKRNLAWDVGTRS-GQAAASLAQ-IYQHVIATDTSPKQLKFAIKLPNIRYQLTPTMSITE-LEQNVATQSSVDLVTIA  106 (262)
Q Consensus        30 ~~~~~~~vlDvGcG~-G~~~~~l~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~D~V~~~  106 (262)
                      ...++.+||-+|+|. |.++.++++ .|++|+++|.+++.++.+++...-.++....   .+ .+.+  . +.+|+|+-.
T Consensus       191 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~Vi~~~~~~~~~~~a~~lGa~~vi~~~~---~~~~~~~--~-~g~Dvvid~  264 (369)
T 1uuf_A          191 QAGPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKALGADEVVNSRN---ADEMAAH--L-KSFDFILNT  264 (369)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTCSEEEETTC---HHHHHTT--T-TCEEEEEEC
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCcEEecccc---HHHHHHh--h-cCCCEEEEC
Confidence            346788999999986 888888877 4889999999999999888753223332221   11 2222  1 579999854


Q ss_pred             cccccCChhHHHHHHHHhhcCCCeEEEEEec
Q 037961          107 SALHWFDLPQFYKQVKWVLKKPSGVIAAWTY  137 (262)
Q Consensus       107 ~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~  137 (262)
                      ..-     ...++.+.++|+ +||+++.+..
T Consensus       265 ~g~-----~~~~~~~~~~l~-~~G~iv~~G~  289 (369)
T 1uuf_A          265 VAA-----PHNLDDFTTLLK-RDGTMTLVGA  289 (369)
T ss_dssp             CSS-----CCCHHHHHTTEE-EEEEEEECCC
T ss_pred             CCC-----HHHHHHHHHHhc-cCCEEEEecc
Confidence            332     235778899999 9999988654

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=96.47  E-value=0.019  Score=49.18  Aligned_cols=100  Identities=13%  Similarity=0.111  Sum_probs=67.5

Q ss_pred             hCCCCCeEEEEcCcc-cHhHHHHHh-hCCeEEEEcCCHHHHHHHhcCCCceEEeCCCCch-hhhhhccCCCCceeeEEEc
Q 037961           30 KTPKRNLAWDVGTRS-GQAAASLAQ-IYQHVIATDTSPKQLKFAIKLPNIRYQLTPTMSI-TELEQNVATQSSVDLVTIA  106 (262)
Q Consensus        30 ~~~~~~~vlDvGcG~-G~~~~~l~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~D~V~~~  106 (262)
                      ...++.+||-+|+|. |..+.++++ .|++|+++|.++.-++.+++......+.....+. ..+....   +.+|+|+-+
T Consensus       161 ~~~~g~~VlV~GaG~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~~d~~~~~~~~~~~~~~---~~~d~vid~  237 (339)
T 1rjw_A          161 GAKPGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKELGADLVVNPLKEDAAKFMKEKV---GGVHAAVVT  237 (339)
T ss_dssp             TCCTTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCSEEECTTTSCHHHHHHHHH---SSEEEEEES
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHCCCCEEecCCCccHHHHHHHHh---CCCCEEEEC
Confidence            346788999999974 777777776 4889999999999999888753222222111111 1122221   469999865


Q ss_pred             cccccCChhHHHHHHHHhhcCCCeEEEEEecC
Q 037961          107 SALHWFDLPQFYKQVKWVLKKPSGVIAAWTYT  138 (262)
Q Consensus       107 ~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~~  138 (262)
                      ..     ....++.+.++|+ +||+++++...
T Consensus       238 ~g-----~~~~~~~~~~~l~-~~G~~v~~g~~  263 (339)
T 1rjw_A          238 AV-----SKPAFQSAYNSIR-RGGACVLVGLP  263 (339)
T ss_dssp             SC-----CHHHHHHHHHHEE-EEEEEEECCCC
T ss_pred             CC-----CHHHHHHHHHHhh-cCCEEEEeccc
Confidence            43     2457889999999 99999886543

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=96.46  E-value=0.018  Score=49.35  Aligned_cols=102  Identities=13%  Similarity=0.048  Sum_probs=70.6

Q ss_pred             hCCCCCeEEEEcCcc-cHhHHHHHhh--CCeEEEEcCCHHHHHHHhcCCCceEEeCCCCchhhhhhccCCCCceeeEEEc
Q 037961           30 KTPKRNLAWDVGTRS-GQAAASLAQI--YQHVIATDTSPKQLKFAIKLPNIRYQLTPTMSITELEQNVATQSSVDLVTIA  106 (262)
Q Consensus        30 ~~~~~~~vlDvGcG~-G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~  106 (262)
                      ...++.+||-+|+|. |.++.++++.  +.+|+++|.+++-++.++++..-.++..+.-....+.... ....+|+|+-.
T Consensus       168 ~~~~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~v~~~t-~g~g~d~v~d~  246 (345)
T 3jv7_A          168 LLGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALAREVGADAAVKSGAGAADAIRELT-GGQGATAVFDF  246 (345)
T ss_dssp             GCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHTTCSEEEECSTTHHHHHHHHH-GGGCEEEEEES
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCCEEEcCCCcHHHHHHHHh-CCCCCeEEEEC
Confidence            356788999999986 8888888874  6899999999999999988643333332210011122221 22369999854


Q ss_pred             cccccCChhHHHHHHHHhhcCCCeEEEEEecC
Q 037961          107 SALHWFDLPQFYKQVKWVLKKPSGVIAAWTYT  138 (262)
Q Consensus       107 ~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~~  138 (262)
                      ..     ....++.+.++|+ +||++++....
T Consensus       247 ~G-----~~~~~~~~~~~l~-~~G~iv~~G~~  272 (345)
T 3jv7_A          247 VG-----AQSTIDTAQQVVA-VDGHISVVGIH  272 (345)
T ss_dssp             SC-----CHHHHHHHHHHEE-EEEEEEECSCC
T ss_pred             CC-----CHHHHHHHHHHHh-cCCEEEEECCC
Confidence            33     2458899999999 99999986543

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=96.46  E-value=0.027  Score=49.44  Aligned_cols=102  Identities=14%  Similarity=0.058  Sum_probs=66.9

Q ss_pred             CCCCCeEEEEcCcc-cHhHHHHHhh-CC-eEEEEcCCHHHHHHHhcCCCceEEeCCCCch-hhhhhccCCCCceeeEEEc
Q 037961           31 TPKRNLAWDVGTRS-GQAAASLAQI-YQ-HVIATDTSPKQLKFAIKLPNIRYQLTPTMSI-TELEQNVATQSSVDLVTIA  106 (262)
Q Consensus        31 ~~~~~~vlDvGcG~-G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~D~V~~~  106 (262)
                      ..++.+||=+|+|. |.++.++++. |+ +|+++|.++.-++.+++...-.++....... ..+..+. ....+|+|+-.
T Consensus       211 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~i~~~t-~g~g~D~vid~  289 (404)
T 3ip1_A          211 IRPGDNVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLAKELGADHVIDPTKENFVEAVLDYT-NGLGAKLFLEA  289 (404)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTCSEEECTTTSCHHHHHHHHT-TTCCCSEEEEC
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCCEEEcCCCCCHHHHHHHHh-CCCCCCEEEEC
Confidence            45788899999976 7888888774 77 8999999999999998763323332221111 1222221 23469999854


Q ss_pred             cccccCChhHHHHHHHHhh----cCCCeEEEEEecC
Q 037961          107 SALHWFDLPQFYKQVKWVL----KKPSGVIAAWTYT  138 (262)
Q Consensus       107 ~~~~~~d~~~~l~~~~r~L----k~pgG~l~i~~~~  138 (262)
                      ..    .....+..+.++|    + +||++++....
T Consensus       290 ~g----~~~~~~~~~~~~l~~~~~-~~G~iv~~G~~  320 (404)
T 3ip1_A          290 TG----VPQLVWPQIEEVIWRARG-INATVAIVARA  320 (404)
T ss_dssp             SS----CHHHHHHHHHHHHHHCSC-CCCEEEECSCC
T ss_pred             CC----CcHHHHHHHHHHHHhccC-CCcEEEEeCCC
Confidence            33    2223566666677    9 99999986643

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1

Probab=96.44  E-value=0.011  Score=51.62  Aligned_cols=100  Identities=14%  Similarity=0.058  Sum_probs=67.1

Q ss_pred             CCCCCeEEEEcCcc-cHhHHHHHhh-C-CeEEEEcCCHHHHHHHhcCCCceEEeCC---CCch-hhhhhccCCCCceeeE
Q 037961           31 TPKRNLAWDVGTRS-GQAAASLAQI-Y-QHVIATDTSPKQLKFAIKLPNIRYQLTP---TMSI-TELEQNVATQSSVDLV  103 (262)
Q Consensus        31 ~~~~~~vlDvGcG~-G~~~~~l~~~-~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~D~V  103 (262)
                      ..++.+||-+|+|. |.++.++++. | .+|+++|.+++-++.++++..-.++...   .... ..+.... ....+|+|
T Consensus       193 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~v~~~~-~g~g~Dvv  271 (380)
T 1vj0_A          193 SFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGADLTLNRRETSVEERRKAIMDIT-HGRGADFI  271 (380)
T ss_dssp             CCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHHHT-TTSCEEEE
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHHcCCcEEEeccccCcchHHHHHHHHh-CCCCCcEE
Confidence            45778999999875 8888888874 7 5999999999999998876322233211   0000 0111111 22369999


Q ss_pred             EEccccccCChhHHHHHHHHhhcCCCeEEEEEec
Q 037961          104 TIASALHWFDLPQFYKQVKWVLKKPSGVIAAWTY  137 (262)
Q Consensus       104 ~~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~  137 (262)
                      +-...     ....++.+.++|+ +||+++++..
T Consensus       272 id~~g-----~~~~~~~~~~~l~-~~G~iv~~G~  299 (380)
T 1vj0_A          272 LEATG-----DSRALLEGSELLR-RGGFYSVAGV  299 (380)
T ss_dssp             EECSS-----CTTHHHHHHHHEE-EEEEEEECCC
T ss_pred             EECCC-----CHHHHHHHHHHHh-cCCEEEEEec
Confidence            85433     2357889999999 9999998654

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=96.44  E-value=0.014  Score=50.17  Aligned_cols=98  Identities=16%  Similarity=0.109  Sum_probs=66.0

Q ss_pred             CCCeEEEEcCcc-cHhHHHHHh-hCC-eEEEEcCCHHHHHHHhcCCCceEEeCCCCch-hhhhhccCCCCceeeEEEccc
Q 037961           33 KRNLAWDVGTRS-GQAAASLAQ-IYQ-HVIATDTSPKQLKFAIKLPNIRYQLTPTMSI-TELEQNVATQSSVDLVTIASA  108 (262)
Q Consensus        33 ~~~~vlDvGcG~-G~~~~~l~~-~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~D~V~~~~~  108 (262)
                      ++.+||-+|+|. |..+.++++ .|+ +|+++|.+++-++.+++...-..+..+.... ..+.... ....+|+|+-...
T Consensus       167 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~v~~~~-~g~g~D~vid~~g  245 (348)
T 2d8a_A          167 SGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKKVGADYVINPFEEDVVKEVMDIT-DGNGVDVFLEFSG  245 (348)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHHTCSEEECTTTSCHHHHHHHHT-TTSCEEEEEECSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEECCCCcCHHHHHHHHc-CCCCCCEEEECCC
Confidence            778899999975 777777776 477 9999999999988887653222222211111 1122221 2336999986543


Q ss_pred             cccCChhHHHHHHHHhhcCCCeEEEEEec
Q 037961          109 LHWFDLPQFYKQVKWVLKKPSGVIAAWTY  137 (262)
Q Consensus       109 ~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~  137 (262)
                           ....++.+.+.|+ +||+++.+..
T Consensus       246 -----~~~~~~~~~~~l~-~~G~iv~~g~  268 (348)
T 2d8a_A          246 -----APKALEQGLQAVT-PAGRVSLLGL  268 (348)
T ss_dssp             -----CHHHHHHHHHHEE-EEEEEEECCC
T ss_pred             -----CHHHHHHHHHHHh-cCCEEEEEcc
Confidence                 2467889999999 9999988654

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=96.41  E-value=0.0084  Score=51.54  Aligned_cols=93  Identities=16%  Similarity=0.064  Sum_probs=67.7

Q ss_pred             hCCCCCeEEEEcCcc-cHhHHHHHhh-CCeEEEEcCCHHHHHHHhcCCCceEEeCCCCchhhhhhccCCCCceeeEEEcc
Q 037961           30 KTPKRNLAWDVGTRS-GQAAASLAQI-YQHVIATDTSPKQLKFAIKLPNIRYQLTPTMSITELEQNVATQSSVDLVTIAS  107 (262)
Q Consensus        30 ~~~~~~~vlDvGcG~-G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~  107 (262)
                      ...++.+||-+|+|. |.++.++++. |++|+++|.+++-++.++++..-..+ .+      .+.+  .. .+|+|+-..
T Consensus       173 ~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~v~-~~------~~~~--~~-~~D~vid~~  242 (348)
T 3two_A          173 KVTKGTKVGVAGFGGLGSMAVKYAVAMGAEVSVFARNEHKKQDALSMGVKHFY-TD------PKQC--KE-ELDFIISTI  242 (348)
T ss_dssp             TCCTTCEEEEESCSHHHHHHHHHHHHTTCEEEEECSSSTTHHHHHHTTCSEEE-SS------GGGC--CS-CEEEEEECC
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHhcCCCeec-CC------HHHH--hc-CCCEEEECC
Confidence            346788999999986 8888888874 88999999999999999886433333 32      1111  12 799998543


Q ss_pred             ccccCChhHHHHHHHHhhcCCCeEEEEEecC
Q 037961          108 ALHWFDLPQFYKQVKWVLKKPSGVIAAWTYT  138 (262)
Q Consensus       108 ~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~~  138 (262)
                      .     ....++.+.++|+ |||++++....
T Consensus       243 g-----~~~~~~~~~~~l~-~~G~iv~~G~~  267 (348)
T 3two_A          243 P-----THYDLKDYLKLLT-YNGDLALVGLP  267 (348)
T ss_dssp             C-----SCCCHHHHHTTEE-EEEEEEECCCC
T ss_pred             C-----cHHHHHHHHHHHh-cCCEEEEECCC
Confidence            3     2236788999999 99999986543

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1

Probab=96.39  E-value=0.018  Score=49.61  Aligned_cols=99  Identities=11%  Similarity=0.075  Sum_probs=66.0

Q ss_pred             CCCCCeEEEEcC--cccHhHHHHHh-hCCeEEEEcCCHHHHHHHhcCCCceEEeCCCCch-hhhhhccCCCCceeeEEEc
Q 037961           31 TPKRNLAWDVGT--RSGQAAASLAQ-IYQHVIATDTSPKQLKFAIKLPNIRYQLTPTMSI-TELEQNVATQSSVDLVTIA  106 (262)
Q Consensus        31 ~~~~~~vlDvGc--G~G~~~~~l~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~D~V~~~  106 (262)
                      ..++.+||-.|+  |.|..+..++. .|++|++++.+++.++.+++.............. ..+... .....+|+|+.+
T Consensus       168 ~~~g~~vlV~GasggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga~~~~d~~~~~~~~~~~~~-~~~~~~D~vi~~  246 (351)
T 1yb5_A          168 VKAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQNGAHEVFNHREVNYIDKIKKY-VGEKGIDIIIEM  246 (351)
T ss_dssp             CCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETTSTTHHHHHHHH-HCTTCEEEEEES
T ss_pred             CCCcCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChhHHHHHHHcCCCEEEeCCCchHHHHHHHH-cCCCCcEEEEEC
Confidence            357889999997  45777777665 5899999999999988887653222222221111 112121 123469999866


Q ss_pred             cccccCChhHHHHHHHHhhcCCCeEEEEEec
Q 037961          107 SALHWFDLPQFYKQVKWVLKKPSGVIAAWTY  137 (262)
Q Consensus       107 ~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~  137 (262)
                      ..      ...+..+.++|+ +||+++++..
T Consensus       247 ~G------~~~~~~~~~~l~-~~G~iv~~g~  270 (351)
T 1yb5_A          247 LA------NVNLSKDLSLLS-HGGRVIVVGS  270 (351)
T ss_dssp             CH------HHHHHHHHHHEE-EEEEEEECCC
T ss_pred             CC------hHHHHHHHHhcc-CCCEEEEEec
Confidence            44      246788899999 9999998663

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=96.31  E-value=0.028  Score=48.85  Aligned_cols=98  Identities=15%  Similarity=0.036  Sum_probs=67.9

Q ss_pred             CCCCeEEEEcCcc-cHhHHHHHhh-CC-eEEEEcCCHHHHHHHhcCCCceEEeCC--CCch-hhhhhccCCCCceeeEEE
Q 037961           32 PKRNLAWDVGTRS-GQAAASLAQI-YQ-HVIATDTSPKQLKFAIKLPNIRYQLTP--TMSI-TELEQNVATQSSVDLVTI  105 (262)
Q Consensus        32 ~~~~~vlDvGcG~-G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~D~V~~  105 (262)
                      .++.+||=+|+|. |.++.++++. |+ +|+++|.+++-++.+++...-.++...  .... ..+..+  .++.+|+|+-
T Consensus       192 ~~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~i~~~--~~gg~D~vid  269 (378)
T 3uko_A          192 EPGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKKFGVNEFVNPKDHDKPIQEVIVDL--TDGGVDYSFE  269 (378)
T ss_dssp             CTTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHHTTTCCEEECGGGCSSCHHHHHHHH--TTSCBSEEEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCcEEEccccCchhHHHHHHHh--cCCCCCEEEE
Confidence            5778899999985 8888888874 77 899999999999999886332222211  0001 112222  2347999995


Q ss_pred             ccccccCChhHHHHHHHHhhcCCC-eEEEEEec
Q 037961          106 ASALHWFDLPQFYKQVKWVLKKPS-GVIAAWTY  137 (262)
Q Consensus       106 ~~~~~~~d~~~~l~~~~r~Lk~pg-G~l~i~~~  137 (262)
                      ...     -...++.+.++|+ +| |++++...
T Consensus       270 ~~g-----~~~~~~~~~~~l~-~g~G~iv~~G~  296 (378)
T 3uko_A          270 CIG-----NVSVMRAALECCH-KGWGTSVIVGV  296 (378)
T ss_dssp             CSC-----CHHHHHHHHHTBC-TTTCEEEECSC
T ss_pred             CCC-----CHHHHHHHHHHhh-ccCCEEEEEcc
Confidence            433     2467899999999 97 99998654

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=96.25  E-value=0.029  Score=48.67  Aligned_cols=99  Identities=14%  Similarity=0.049  Sum_probs=67.6

Q ss_pred             CCCCCeEEEEcCcc-cHhHHHHHhh-CC-eEEEEcCCHHHHHHHhcCCCceEEeCCC--Cch-hhhhhccCCCCceeeEE
Q 037961           31 TPKRNLAWDVGTRS-GQAAASLAQI-YQ-HVIATDTSPKQLKFAIKLPNIRYQLTPT--MSI-TELEQNVATQSSVDLVT  104 (262)
Q Consensus        31 ~~~~~~vlDvGcG~-G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~D~V~  104 (262)
                      ..++.+||-+|+|. |.++.++++. |+ +|+++|.+++-++.++++..-.++....  ... ..+...  ..+.+|+|+
T Consensus       189 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~i~~~--t~gg~Dvvi  266 (373)
T 1p0f_A          189 VTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATECLNPKDYDKPIYEVICEK--TNGGVDYAV  266 (373)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHH--TTSCBSEEE
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCcEEEecccccchHHHHHHHH--hCCCCCEEE
Confidence            35788999999986 8888888874 77 8999999999999998763222222111  001 112222  234799998


Q ss_pred             EccccccCChhHHHHHHHHhhcCCC-eEEEEEec
Q 037961          105 IASALHWFDLPQFYKQVKWVLKKPS-GVIAAWTY  137 (262)
Q Consensus       105 ~~~~~~~~d~~~~l~~~~r~Lk~pg-G~l~i~~~  137 (262)
                      -...     ....++.+.++|+ +| |+++++..
T Consensus       267 d~~g-----~~~~~~~~~~~l~-~~~G~iv~~G~  294 (373)
T 1p0f_A          267 ECAG-----RIETMMNALQSTY-CGSGVTVVLGL  294 (373)
T ss_dssp             ECSC-----CHHHHHHHHHTBC-TTTCEEEECCC
T ss_pred             ECCC-----CHHHHHHHHHHHh-cCCCEEEEEcc
Confidence            5432     2457889999999 99 99988654

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*

Probab=96.25  E-value=0.023  Score=48.60  Aligned_cols=98  Identities=13%  Similarity=0.100  Sum_probs=66.2

Q ss_pred             CCCCCeEEEEcC--cccHhHHHHHh-hCCeEEEEcCCHHHHHHHh-cCCCceEEeCC-CCch-hhhhhccCCCCceeeEE
Q 037961           31 TPKRNLAWDVGT--RSGQAAASLAQ-IYQHVIATDTSPKQLKFAI-KLPNIRYQLTP-TMSI-TELEQNVATQSSVDLVT  104 (262)
Q Consensus        31 ~~~~~~vlDvGc--G~G~~~~~l~~-~~~~v~~vD~s~~~~~~a~-~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~D~V~  104 (262)
                      ..++.+||-.|+  |.|..+..++. .|++|++++.+++.++.++ +.......... .... ..+....  .+.+|+|+
T Consensus       153 ~~~g~~vlI~Ga~g~iG~~~~~~a~~~G~~V~~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~--~~~~d~vi  230 (345)
T 2j3h_A          153 PKEGETVYVSAASGAVGQLVGQLAKMMGCYVVGSAGSKEKVDLLKTKFGFDDAFNYKEESDLTAALKRCF--PNGIDIYF  230 (345)
T ss_dssp             CCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTSCCSEEEETTSCSCSHHHHHHHC--TTCEEEEE
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCCceEEecCCHHHHHHHHHHHh--CCCCcEEE
Confidence            357889999998  45777777776 5889999999999998887 44222222211 1011 1222221  25699998


Q ss_pred             EccccccCChhHHHHHHHHhhcCCCeEEEEEec
Q 037961          105 IASALHWFDLPQFYKQVKWVLKKPSGVIAAWTY  137 (262)
Q Consensus       105 ~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~  137 (262)
                      .+.+      ...++.+.+.|+ +||+++++..
T Consensus       231 ~~~g------~~~~~~~~~~l~-~~G~~v~~G~  256 (345)
T 2j3h_A          231 ENVG------GKMLDAVLVNMN-MHGRIAVCGM  256 (345)
T ss_dssp             ESSC------HHHHHHHHTTEE-EEEEEEECCC
T ss_pred             ECCC------HHHHHHHHHHHh-cCCEEEEEcc
Confidence            6644      247889999999 9999988553

>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A

Probab=96.25  E-value=0.0064  Score=51.90  Aligned_cols=57  Identities=18%  Similarity=0.205  Sum_probs=49.6

Q ss_pred             CChHHHHHHHHhh-CCCCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCH---HHHHHHhcC
Q 037961           18 NYPKELFKLIASK-TPKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSP---KQLKFAIKL   74 (262)
Q Consensus        18 ~yp~~~~~~l~~~-~~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~---~~~~~a~~~   74 (262)
                      ..|.++++.++.. ..++..|||--||+|..+......+.+.+|+|+++   ..++.++++
T Consensus       226 ~kp~~l~~~~i~~~~~~~~~vlDpF~GsGtt~~aa~~~~r~~ig~e~~~~~~~~~~~~~~R  286 (319)
T 1eg2_A          226 QKPAAVIERLVRALSHPGSTVLDFFAGSGVTARVAIQEGRNSICTDAAPVFKEYYQKQLTF  286 (319)
T ss_dssp             CCCHHHHHHHHHHHSCTTCEEEETTCTTCHHHHHHHHHTCEEEEEESSTHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHhCCCCCEEEecCCCCCHHHHHHHHcCCcEEEEECCccHHHHHHHHHHH
Confidence            4678888887765 46889999999999999999999999999999999   999888753

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}

Probab=96.23  E-value=0.027  Score=48.31  Aligned_cols=96  Identities=18%  Similarity=0.214  Sum_probs=65.1

Q ss_pred             CCCeEEEE-cCcc-cHhHHHHHhh-CCeEEEEcCCHHHHHHHhcCCCceEEeCCCCchhhhhhccCCCCceeeEEEcccc
Q 037961           33 KRNLAWDV-GTRS-GQAAASLAQI-YQHVIATDTSPKQLKFAIKLPNIRYQLTPTMSITELEQNVATQSSVDLVTIASAL  109 (262)
Q Consensus        33 ~~~~vlDv-GcG~-G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~  109 (262)
                      ++.+||=. |+|. |.++.++++. |++|++++.+++-++.+++...-..+..+.-....+...  ....+|+|+-+.. 
T Consensus       150 ~g~~VlV~gg~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~--~~~g~Dvv~d~~g-  226 (346)
T 3fbg_A          150 EGKTLLIINGAGGVGSIATQIAKAYGLRVITTASRNETIEWTKKMGADIVLNHKESLLNQFKTQ--GIELVDYVFCTFN-  226 (346)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEECCSHHHHHHHHHHTCSEEECTTSCHHHHHHHH--TCCCEEEEEESSC-
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCcEEEECCccHHHHHHHh--CCCCccEEEECCC-
Confidence            67888988 5664 8888887764 889999999999999888753222222221001122222  3457999986422 


Q ss_pred             ccCChhHHHHHHHHhhcCCCeEEEEEe
Q 037961          110 HWFDLPQFYKQVKWVLKKPSGVIAAWT  136 (262)
Q Consensus       110 ~~~d~~~~l~~~~r~Lk~pgG~l~i~~  136 (262)
                          ....++.+.++|+ +||+++...
T Consensus       227 ----~~~~~~~~~~~l~-~~G~iv~~~  248 (346)
T 3fbg_A          227 ----TDMYYDDMIQLVK-PRGHIATIV  248 (346)
T ss_dssp             ----HHHHHHHHHHHEE-EEEEEEESS
T ss_pred             ----chHHHHHHHHHhc-cCCEEEEEC
Confidence                3457889999999 999997643

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=96.19  E-value=0.03  Score=48.52  Aligned_cols=100  Identities=17%  Similarity=0.095  Sum_probs=67.3

Q ss_pred             CCCCCeEEEEcCcc-cHhHHHHHhh-CC-eEEEEcCCHHHHHHHhcCCCceEEeCCC--Cch-hhhhhccCCCCceeeEE
Q 037961           31 TPKRNLAWDVGTRS-GQAAASLAQI-YQ-HVIATDTSPKQLKFAIKLPNIRYQLTPT--MSI-TELEQNVATQSSVDLVT  104 (262)
Q Consensus        31 ~~~~~~vlDvGcG~-G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~D~V~  104 (262)
                      ..++.+||-+|+|. |.++.++++. |+ +|+++|.+++.++.+++...-.++....  ... ..+...  ..+.+|+|+
T Consensus       190 ~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~--~~~g~D~vi  267 (374)
T 1cdo_A          190 VEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGATDFVNPNDHSEPISQVLSKM--TNGGVDFSL  267 (374)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCCEEECGGGCSSCHHHHHHHH--HTSCBSEEE
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhCCceEEeccccchhHHHHHHHH--hCCCCCEEE
Confidence            35778999999875 7888888774 77 8999999999999988763222222111  011 111122  124799998


Q ss_pred             EccccccCChhHHHHHHHHhhcCCC-eEEEEEecC
Q 037961          105 IASALHWFDLPQFYKQVKWVLKKPS-GVIAAWTYT  138 (262)
Q Consensus       105 ~~~~~~~~d~~~~l~~~~r~Lk~pg-G~l~i~~~~  138 (262)
                      -...     ....++.+.++|+ +| |+++++...
T Consensus       268 d~~g-----~~~~~~~~~~~l~-~~~G~iv~~G~~  296 (374)
T 1cdo_A          268 ECVG-----NVGVMRNALESCL-KGWGVSVLVGWT  296 (374)
T ss_dssp             ECSC-----CHHHHHHHHHTBC-TTTCEEEECSCC
T ss_pred             ECCC-----CHHHHHHHHHHhh-cCCcEEEEEcCC
Confidence            5433     2457889999999 99 999986543

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=96.17  E-value=0.015  Score=50.01  Aligned_cols=99  Identities=10%  Similarity=0.007  Sum_probs=66.1

Q ss_pred             CCCCCeEEEEcC--cccHhHHHHHh-hCCeEEEEcCCHHHHHHHhcCCCceEEeCC-CCch-hhhhhccCCCCceeeEEE
Q 037961           31 TPKRNLAWDVGT--RSGQAAASLAQ-IYQHVIATDTSPKQLKFAIKLPNIRYQLTP-TMSI-TELEQNVATQSSVDLVTI  105 (262)
Q Consensus        31 ~~~~~~vlDvGc--G~G~~~~~l~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~D~V~~  105 (262)
                      ..++.+||-.|+  |.|..+..++. .|++|+++|.+++.++.+++.......... .... ..+....  .+.+|+|+.
T Consensus       167 ~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~V~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~--~~~~D~vi~  244 (347)
T 2hcy_A          167 LMAGHWVAISGAAGGLGSLAVQYAKAMGYRVLGIDGGEGKEELFRSIGGEVFIDFTKEKDIVGAVLKAT--DGGAHGVIN  244 (347)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSTTHHHHHHHTTCCEEEETTTCSCHHHHHHHHH--TSCEEEEEE
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCcEEEEcCCHHHHHHHHHcCCceEEecCccHhHHHHHHHHh--CCCCCEEEE
Confidence            457889999999  46777777766 589999999999888888765322222211 1111 1122221  126999986


Q ss_pred             ccccccCChhHHHHHHHHhhcCCCeEEEEEec
Q 037961          106 ASALHWFDLPQFYKQVKWVLKKPSGVIAAWTY  137 (262)
Q Consensus       106 ~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~  137 (262)
                      +.+     ....++.+.+.|+ +||+++++..
T Consensus       245 ~~g-----~~~~~~~~~~~l~-~~G~iv~~g~  270 (347)
T 2hcy_A          245 VSV-----SEAAIEASTRYVR-ANGTTVLVGM  270 (347)
T ss_dssp             CSS-----CHHHHHHHTTSEE-EEEEEEECCC
T ss_pred             CCC-----cHHHHHHHHHHHh-cCCEEEEEeC
Confidence            644     2457889999999 9999988654

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=96.14  E-value=0.037  Score=48.00  Aligned_cols=99  Identities=11%  Similarity=0.020  Sum_probs=67.1

Q ss_pred             CCCCCeEEEEcCcc-cHhHHHHHhh-CC-eEEEEcCCHHHHHHHhcCCCceEEeCCC--Cch-hhhhhccCCCCceeeEE
Q 037961           31 TPKRNLAWDVGTRS-GQAAASLAQI-YQ-HVIATDTSPKQLKFAIKLPNIRYQLTPT--MSI-TELEQNVATQSSVDLVT  104 (262)
Q Consensus        31 ~~~~~~vlDvGcG~-G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~D~V~  104 (262)
                      ..++.+||-+|+|. |..+.++++. |+ +|+++|.+++.++.+++...-..+....  ... ..+...  .++.+|+|+
T Consensus       189 ~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~--~~~g~D~vi  266 (374)
T 2jhf_A          189 VTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVNPQDYKKPIQEVLTEM--SNGGVDFSF  266 (374)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHH--TTSCBSEEE
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCceEecccccchhHHHHHHHH--hCCCCcEEE
Confidence            35778999999886 7888888774 77 8999999999999988763222222111  001 112222  234799998


Q ss_pred             EccccccCChhHHHHHHHHhhcCCC-eEEEEEec
Q 037961          105 IASALHWFDLPQFYKQVKWVLKKPS-GVIAAWTY  137 (262)
Q Consensus       105 ~~~~~~~~d~~~~l~~~~r~Lk~pg-G~l~i~~~  137 (262)
                      -...     ....++.+.++|+ +| |+++++..
T Consensus       267 d~~g-----~~~~~~~~~~~l~-~~~G~iv~~G~  294 (374)
T 2jhf_A          267 EVIG-----RLDTMVTALSCCQ-EAYGVSVIVGV  294 (374)
T ss_dssp             ECSC-----CHHHHHHHHHHBC-TTTCEEEECSC
T ss_pred             ECCC-----CHHHHHHHHHHhh-cCCcEEEEecc
Confidence            5432     2457889999999 99 99988654

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=96.13  E-value=0.018  Score=48.87  Aligned_cols=99  Identities=12%  Similarity=0.074  Sum_probs=65.1

Q ss_pred             CCCCCeEEEEcC--cccHhHHHHHh-hCCeEEEEcCCHHHHHHHhcCCCceEEeCCCCch-hhhhhccCCCCceeeEEEc
Q 037961           31 TPKRNLAWDVGT--RSGQAAASLAQ-IYQHVIATDTSPKQLKFAIKLPNIRYQLTPTMSI-TELEQNVATQSSVDLVTIA  106 (262)
Q Consensus        31 ~~~~~~vlDvGc--G~G~~~~~l~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~D~V~~~  106 (262)
                      .+++.+||-.|+  |.|..+..++. .|++|+++|.+++.++.+++...-.......... ..+... .....+|+|+.+
T Consensus       138 ~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~D~vi~~  216 (327)
T 1qor_A          138 IKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALKAGAWQVINYREEDLVERLKEI-TGGKKVRVVYDS  216 (327)
T ss_dssp             CCTTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHH-TTTCCEEEEEEC
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCEEEECCCccHHHHHHHH-hCCCCceEEEEC
Confidence            357889999994  45777666665 5899999999999888887642222222211111 112221 123469999966


Q ss_pred             cccccCChhHHHHHHHHhhcCCCeEEEEEec
Q 037961          107 SALHWFDLPQFYKQVKWVLKKPSGVIAAWTY  137 (262)
Q Consensus       107 ~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~  137 (262)
                      ..      ...++.+.++|+ +||+++++..
T Consensus       217 ~g------~~~~~~~~~~l~-~~G~iv~~g~  240 (327)
T 1qor_A          217 VG------RDTWERSLDCLQ-RRGLMVSFGN  240 (327)
T ss_dssp             SC------GGGHHHHHHTEE-EEEEEEECCC
T ss_pred             Cc------hHHHHHHHHHhc-CCCEEEEEec
Confidence            54      356889999999 9999988654

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}

Probab=96.13  E-value=0.023  Score=48.68  Aligned_cols=99  Identities=18%  Similarity=0.068  Sum_probs=66.3

Q ss_pred             CCCCCeEEEEcC--cccHhHHHHHh-hCCeEEEEcCCHHHHHHHhcCCCceEEeCCCCch-hhhhhccCCCCceeeEEEc
Q 037961           31 TPKRNLAWDVGT--RSGQAAASLAQ-IYQHVIATDTSPKQLKFAIKLPNIRYQLTPTMSI-TELEQNVATQSSVDLVTIA  106 (262)
Q Consensus        31 ~~~~~~vlDvGc--G~G~~~~~l~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~D~V~~~  106 (262)
                      ..++.+||-.|+  |.|..+..++. .|++|+++|.+++.++.+++......+....... ..+... .....+|+|+.+
T Consensus       164 ~~~g~~vlV~Gasg~iG~~~~~~a~~~G~~Vi~~~~~~~~~~~~~~~ga~~~~d~~~~~~~~~~~~~-~~~~~~d~vi~~  242 (343)
T 2eih_A          164 VRPGDDVLVMAAGSGVSVAAIQIAKLFGARVIATAGSEDKLRRAKALGADETVNYTHPDWPKEVRRL-TGGKGADKVVDH  242 (343)
T ss_dssp             CCTTCEEEECSTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHTCSEEEETTSTTHHHHHHHH-TTTTCEEEEEES
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcCCCEEEcCCcccHHHHHHHH-hCCCCceEEEEC
Confidence            357889999998  56888877776 5889999999999998887642222222211111 112222 123479999966


Q ss_pred             cccccCChhHHHHHHHHhhcCCCeEEEEEec
Q 037961          107 SALHWFDLPQFYKQVKWVLKKPSGVIAAWTY  137 (262)
Q Consensus       107 ~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~  137 (262)
                      ..      ...++.+.++|+ ++|+++.+..
T Consensus       243 ~g------~~~~~~~~~~l~-~~G~~v~~g~  266 (343)
T 2eih_A          243 TG------ALYFEGVIKATA-NGGRIAIAGA  266 (343)
T ss_dssp             SC------SSSHHHHHHHEE-EEEEEEESSC
T ss_pred             CC------HHHHHHHHHhhc-cCCEEEEEec
Confidence            54      245788899999 9999988553

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}

Probab=96.11  E-value=0.018  Score=49.63  Aligned_cols=97  Identities=16%  Similarity=0.148  Sum_probs=65.9

Q ss_pred             CCCCeEEEEc-Cc-ccHhHHHHHh-hCCeEEEEcCCHHHHHHHhcCCCceEEeCCCCc-hhhhhhccCCCCceeeEEEcc
Q 037961           32 PKRNLAWDVG-TR-SGQAAASLAQ-IYQHVIATDTSPKQLKFAIKLPNIRYQLTPTMS-ITELEQNVATQSSVDLVTIAS  107 (262)
Q Consensus        32 ~~~~~vlDvG-cG-~G~~~~~l~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~D~V~~~~  107 (262)
                      +++.+||-.| +| .|..+..+++ .|++|+++|.+++.++.+++...-..+...... ...+....  ...+|+|+-+.
T Consensus       166 ~~g~~VlV~Gg~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~~~~~~~~~~~~~~~~~--~~g~Dvvid~~  243 (353)
T 4dup_A          166 TEGESVLIHGGTSGIGTTAIQLARAFGAEVYATAGSTGKCEACERLGAKRGINYRSEDFAAVIKAET--GQGVDIILDMI  243 (353)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHH--SSCEEEEEESC
T ss_pred             CCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCCEEEeCCchHHHHHHHHHh--CCCceEEEECC
Confidence            5788999984 34 4777777776 489999999999999988875332333322111 11222222  45799999654


Q ss_pred             ccccCChhHHHHHHHHhhcCCCeEEEEEec
Q 037961          108 ALHWFDLPQFYKQVKWVLKKPSGVIAAWTY  137 (262)
Q Consensus       108 ~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~  137 (262)
                      .-      ..++.+.+.|+ +||++++...
T Consensus       244 g~------~~~~~~~~~l~-~~G~iv~~g~  266 (353)
T 4dup_A          244 GA------AYFERNIASLA-KDGCLSIIAF  266 (353)
T ss_dssp             CG------GGHHHHHHTEE-EEEEEEECCC
T ss_pred             CH------HHHHHHHHHhc-cCCEEEEEEe
Confidence            42      36788899999 9999988654

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=96.10  E-value=0.032  Score=48.45  Aligned_cols=99  Identities=15%  Similarity=0.028  Sum_probs=67.1

Q ss_pred             CCCCCeEEEEcCcc-cHhHHHHHhh-CC-eEEEEcCCHHHHHHHhcCCCceEEeCCC--Cch-hhhhhccCCCCceeeEE
Q 037961           31 TPKRNLAWDVGTRS-GQAAASLAQI-YQ-HVIATDTSPKQLKFAIKLPNIRYQLTPT--MSI-TELEQNVATQSSVDLVT  104 (262)
Q Consensus        31 ~~~~~~vlDvGcG~-G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~D~V~  104 (262)
                      ..++.+||-+|+|. |.++.++++. |+ +|+++|.+++-++.++++..-..+....  ... ..+...  ..+.+|+|+
T Consensus       193 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~v~~~--~~~g~Dvvi  270 (376)
T 1e3i_A          193 VTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATDCLNPRELDKPVQDVITEL--TAGGVDYSL  270 (376)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHH--HTSCBSEEE
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCcEEEccccccchHHHHHHHH--hCCCccEEE
Confidence            35778999999885 8888888874 77 8999999999999988763222222111  001 112222  123799998


Q ss_pred             EccccccCChhHHHHHHHHhhcCCC-eEEEEEec
Q 037961          105 IASALHWFDLPQFYKQVKWVLKKPS-GVIAAWTY  137 (262)
Q Consensus       105 ~~~~~~~~d~~~~l~~~~r~Lk~pg-G~l~i~~~  137 (262)
                      -...     ....++.+.++|+ +| |+++++..
T Consensus       271 d~~G-----~~~~~~~~~~~l~-~~~G~iv~~G~  298 (376)
T 1e3i_A          271 DCAG-----TAQTLKAAVDCTV-LGWGSCTVVGA  298 (376)
T ss_dssp             ESSC-----CHHHHHHHHHTBC-TTTCEEEECCC
T ss_pred             ECCC-----CHHHHHHHHHHhh-cCCCEEEEECC
Confidence            5433     2467889999999 99 99998654

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}

Probab=96.09  E-value=0.091  Score=44.81  Aligned_cols=101  Identities=17%  Similarity=0.097  Sum_probs=67.9

Q ss_pred             CCCCCeEEEEcCcc-cHhHHHHHhh-CC-eEEEEcCCHHHHHHHhcCCCceEEeCCCCchhhh-hhccCCCCceeeEEEc
Q 037961           31 TPKRNLAWDVGTRS-GQAAASLAQI-YQ-HVIATDTSPKQLKFAIKLPNIRYQLTPTMSITEL-EQNVATQSSVDLVTIA  106 (262)
Q Consensus        31 ~~~~~~vlDvGcG~-G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~D~V~~~  106 (262)
                      ..++.+||=.|+|. |.++.++++. |+ .++++|.+++-++.++++-....+........+. ..+. ....+|+|+-.
T Consensus       158 ~~~g~~VlV~GaG~vG~~aiq~ak~~G~~~vi~~~~~~~k~~~a~~lGa~~~i~~~~~~~~~~~~~~~-~~~g~d~v~d~  236 (346)
T 4a2c_A          158 GCENKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDISSEKLALAKSFGAMQTFNSSEMSAPQMQSVLR-ELRFNQLILET  236 (346)
T ss_dssp             CCTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHG-GGCSSEEEEEC
T ss_pred             cCCCCEEEEECCCCcchHHHHHHHHcCCcEEEEEechHHHHHHHHHcCCeEEEeCCCCCHHHHHHhhc-ccCCccccccc
Confidence            35788999999986 6677777764 65 5689999999999999874444444332111111 1111 23457888744


Q ss_pred             cccccCChhHHHHHHHHhhcCCCeEEEEEecC
Q 037961          107 SALHWFDLPQFYKQVKWVLKKPSGVIAAWTYT  138 (262)
Q Consensus       107 ~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~~  138 (262)
                      ..     -...++.+.++|+ +||++++....
T Consensus       237 ~G-----~~~~~~~~~~~l~-~~G~~v~~g~~  262 (346)
T 4a2c_A          237 AG-----VPQTVELAVEIAG-PHAQLALVGTL  262 (346)
T ss_dssp             SC-----SHHHHHHHHHHCC-TTCEEEECCCC
T ss_pred             cc-----ccchhhhhhheec-CCeEEEEEecc
Confidence            22     3567889999999 99999986643

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=95.99  E-value=0.034  Score=48.11  Aligned_cols=99  Identities=13%  Similarity=0.042  Sum_probs=66.8

Q ss_pred             CCCCCeEEEEcCcc-cHhHHHHHhh-CC-eEEEEcCCHHHHHHHhcCCCceEEeCCC--Cch-hhhhhccCCCCceeeEE
Q 037961           31 TPKRNLAWDVGTRS-GQAAASLAQI-YQ-HVIATDTSPKQLKFAIKLPNIRYQLTPT--MSI-TELEQNVATQSSVDLVT  104 (262)
Q Consensus        31 ~~~~~~vlDvGcG~-G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~D~V~  104 (262)
                      ..++.+||-+|+|. |.++.++++. |+ +|+++|.+++.++.+++...-.++....  ... ..+...  ..+.+|+|+
T Consensus       188 ~~~g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~v~~~--~~~g~D~vi  265 (373)
T 2fzw_A          188 LEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATECINPQDFSKPIQEVLIEM--TDGGVDYSF  265 (373)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHH--TTSCBSEEE
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEeccccccccHHHHHHHH--hCCCCCEEE
Confidence            35778999999876 7888888774 77 8999999999999888653222221111  001 112222  234799998


Q ss_pred             EccccccCChhHHHHHHHHhhcCCC-eEEEEEec
Q 037961          105 IASALHWFDLPQFYKQVKWVLKKPS-GVIAAWTY  137 (262)
Q Consensus       105 ~~~~~~~~d~~~~l~~~~r~Lk~pg-G~l~i~~~  137 (262)
                      -...     ....++.+.++|+ +| |+++++..
T Consensus       266 d~~g-----~~~~~~~~~~~l~-~~~G~iv~~G~  293 (373)
T 2fzw_A          266 ECIG-----NVKVMRAALEACH-KGWGVSVVVGV  293 (373)
T ss_dssp             ECSC-----CHHHHHHHHHTBC-TTTCEEEECSC
T ss_pred             ECCC-----cHHHHHHHHHhhc-cCCcEEEEEec
Confidence            5433     2457889999999 99 99998654

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}

Probab=95.97  E-value=0.018  Score=49.34  Aligned_cols=99  Identities=10%  Similarity=0.034  Sum_probs=66.9

Q ss_pred             hCCCCCeEEEEcCcc-cHhHHHHHh-h--CCeEEEEcCCHHHHHHHhcCCCceEEeCCCCchhhhhhccCCCCceeeEEE
Q 037961           30 KTPKRNLAWDVGTRS-GQAAASLAQ-I--YQHVIATDTSPKQLKFAIKLPNIRYQLTPTMSITELEQNVATQSSVDLVTI  105 (262)
Q Consensus        30 ~~~~~~~vlDvGcG~-G~~~~~l~~-~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~  105 (262)
                      .. ++.+||-+|+|. |.++.++++ .  |++|+++|.+++-++.+++...-.++..... ....+.+. ....+|+|+-
T Consensus       168 ~~-~g~~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~-~~~~~~~~-~g~g~D~vid  244 (344)
T 2h6e_A          168 KF-AEPVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKKHRDFALELGADYVSEMKDA-ESLINKLT-DGLGASIAID  244 (344)
T ss_dssp             TC-SSCEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHTCSEEECHHHH-HHHHHHHH-TTCCEEEEEE
T ss_pred             CC-CCCEEEEECCCHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHHhCCCEEeccccc-hHHHHHhh-cCCCccEEEE
Confidence            45 788999999975 777777776 5  8899999999999998886532222211000 00011221 1336999996


Q ss_pred             ccccccCChhHHHHHHHHhhcCCCeEEEEEec
Q 037961          106 ASALHWFDLPQFYKQVKWVLKKPSGVIAAWTY  137 (262)
Q Consensus       106 ~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~  137 (262)
                      ...     ....++.+.++|+ +||+++++..
T Consensus       245 ~~g-----~~~~~~~~~~~l~-~~G~iv~~g~  270 (344)
T 2h6e_A          245 LVG-----TEETTYNLGKLLA-QEGAIILVGM  270 (344)
T ss_dssp             SSC-----CHHHHHHHHHHEE-EEEEEEECCC
T ss_pred             CCC-----ChHHHHHHHHHhh-cCCEEEEeCC
Confidence            543     2457899999999 9999988654

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A*

Probab=95.95  E-value=0.042  Score=47.48  Aligned_cols=98  Identities=21%  Similarity=0.167  Sum_probs=67.2

Q ss_pred             CCCCCeEEEEc-Cc-ccHhHHHHHh-hCCeEEEEcCCHHHHHHHhcCCCceEEeCCCCch-hhhhhccCCCCceeeEEEc
Q 037961           31 TPKRNLAWDVG-TR-SGQAAASLAQ-IYQHVIATDTSPKQLKFAIKLPNIRYQLTPTMSI-TELEQNVATQSSVDLVTIA  106 (262)
Q Consensus        31 ~~~~~~vlDvG-cG-~G~~~~~l~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~D~V~~~  106 (262)
                      .+++.+||-.| +| .|..+..+++ .|++|++++.+++.++.+++...-.....+.... ..+...  ....+|+|+-+
T Consensus       161 ~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~--~~~g~D~vid~  238 (362)
T 2c0c_A          161 LSEGKKVLVTAAAGGTGQFAMQLSKKAKCHVIGTCSSDEKSAFLKSLGCDRPINYKTEPVGTVLKQE--YPEGVDVVYES  238 (362)
T ss_dssp             CCTTCEEEETTTTBTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETTTSCHHHHHHHH--CTTCEEEEEEC
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCCcEEEecCChhHHHHHHHh--cCCCCCEEEEC
Confidence            46788999999 34 5888888776 4889999999999988888753222332221111 112222  23469999965


Q ss_pred             cccccCChhHHHHHHHHhhcCCCeEEEEEec
Q 037961          107 SALHWFDLPQFYKQVKWVLKKPSGVIAAWTY  137 (262)
Q Consensus       107 ~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~  137 (262)
                      ..      ...++.+.++|+ +||+++++..
T Consensus       239 ~g------~~~~~~~~~~l~-~~G~iv~~g~  262 (362)
T 2c0c_A          239 VG------GAMFDLAVDALA-TKGRLIVIGF  262 (362)
T ss_dssp             SC------THHHHHHHHHEE-EEEEEEECCC
T ss_pred             CC------HHHHHHHHHHHh-cCCEEEEEeC
Confidence            44      257889999999 9999988653

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=95.91  E-value=0.019  Score=49.22  Aligned_cols=97  Identities=14%  Similarity=0.092  Sum_probs=64.6

Q ss_pred             CCCCeEEEEcC--cccHhHHHHHhh-CCeEEEEcCCHHHHHHHhcCCCceEEeCCCCch-hhhhhccCCCCceeeEEEcc
Q 037961           32 PKRNLAWDVGT--RSGQAAASLAQI-YQHVIATDTSPKQLKFAIKLPNIRYQLTPTMSI-TELEQNVATQSSVDLVTIAS  107 (262)
Q Consensus        32 ~~~~~vlDvGc--G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~D~V~~~~  107 (262)
                      .++.+||-.|+  |.|..+.++++. |++|++++.+++-++.+++...-.....+ ... ..+... .....+|+|+-+.
T Consensus       158 ~~g~~VlV~Gasg~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga~~v~~~~-~~~~~~v~~~-~~~~g~Dvvid~~  235 (342)
T 4eye_A          158 RAGETVLVLGAAGGIGTAAIQIAKGMGAKVIAVVNRTAATEFVKSVGADIVLPLE-EGWAKAVREA-TGGAGVDMVVDPI  235 (342)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTCSEEEESS-TTHHHHHHHH-TTTSCEEEEEESC
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCcEEecCc-hhHHHHHHHH-hCCCCceEEEECC
Confidence            57889999998  348888887764 89999999999998888875322222222 001 112222 1234699999654


Q ss_pred             ccccCChhHHHHHHHHhhcCCCeEEEEEec
Q 037961          108 ALHWFDLPQFYKQVKWVLKKPSGVIAAWTY  137 (262)
Q Consensus       108 ~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~  137 (262)
                      .-      ..+..+.+.|+ +||++++...
T Consensus       236 g~------~~~~~~~~~l~-~~G~iv~~G~  258 (342)
T 4eye_A          236 GG------PAFDDAVRTLA-SEGRLLVVGF  258 (342)
T ss_dssp             C--------CHHHHHHTEE-EEEEEEEC--
T ss_pred             ch------hHHHHHHHhhc-CCCEEEEEEc
Confidence            42      25788999999 9999998553

>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26

Probab=95.85  E-value=0.017  Score=49.72  Aligned_cols=87  Identities=14%  Similarity=0.127  Sum_probs=58.4

Q ss_pred             CeEEEEcCcccHhHHHHHhhC--C-eEEEEcCCHHHHHHHhcC-CCceEEeCC--CCchhhhhhccCCCCceeeEEEccc
Q 037961           35 NLAWDVGTRSGQAAASLAQIY--Q-HVIATDTSPKQLKFAIKL-PNIRYQLTP--TMSITELEQNVATQSSVDLVTIASA  108 (262)
Q Consensus        35 ~~vlDvGcG~G~~~~~l~~~~--~-~v~~vD~s~~~~~~a~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~D~V~~~~~  108 (262)
                      .+++|+.||.|.++..+...|  . .|.++|+++..++..+.+ ++..+..+|  .+...+   +  +...+|+|+....
T Consensus         3 ~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~~~~~~~~~Di~~~~~~~---~--~~~~~D~l~~gpP   77 (343)
T 1g55_A            3 LRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFPHTQLLAKTIEGITLEE---F--DRLSFDMILMSPP   77 (343)
T ss_dssp             EEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTTSCEECSCGGGCCHHH---H--HHHCCSEEEECCC
T ss_pred             CeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhccccccccCCHHHccHhH---c--CcCCcCEEEEcCC
Confidence            468999999999999999887  3 588999999999988754 566666666  211111   1  1125899999877


Q ss_pred             cccC----------Chh-HHHHHHHHhhc
Q 037961          109 LHWF----------DLP-QFYKQVKWVLK  126 (262)
Q Consensus       109 ~~~~----------d~~-~~l~~~~r~Lk  126 (262)
                      ++-+          |.. .++.++.++++
T Consensus        78 Cq~fS~ag~~~g~~d~r~~l~~~~~~~i~  106 (343)
T 1g55_A           78 CQPFTRIGRQGDMTDSRTNSFLHILDILP  106 (343)
T ss_dssp             ------------------CHHHHHHHHGG
T ss_pred             CcchhhcCCcCCccCccchHHHHHHHHHH
Confidence            5533          211 26667777776

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A*

Probab=95.80  E-value=0.035  Score=47.77  Aligned_cols=99  Identities=15%  Similarity=0.061  Sum_probs=64.6

Q ss_pred             CCCCCeEEEEcC--cccHhHHHHHh-hCCeEEEEcCCHHHHHHHhcCCCceEEeCCCCch-hhhhhccCCCCceeeEEEc
Q 037961           31 TPKRNLAWDVGT--RSGQAAASLAQ-IYQHVIATDTSPKQLKFAIKLPNIRYQLTPTMSI-TELEQNVATQSSVDLVTIA  106 (262)
Q Consensus        31 ~~~~~~vlDvGc--G~G~~~~~l~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~D~V~~~  106 (262)
                      ..++.+||-.|+  |.|..+..++. .|++|+++|.+++.++.+++...-.......... ..+... .....+|+|+.+
T Consensus       160 ~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~d~vi~~  238 (354)
T 2j8z_A          160 VQAGDYVLIHAGLSGVGTAAIQLTRMAGAIPLVTAGSQKKLQMAEKLGAAAGFNYKKEDFSEATLKF-TKGAGVNLILDC  238 (354)
T ss_dssp             CCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHH-TTTSCEEEEEES
T ss_pred             CCCCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCcEEEecCChHHHHHHHHH-hcCCCceEEEEC
Confidence            357789999984  45777776665 5889999999999988887542222222211111 112222 123469999865


Q ss_pred             cccccCChhHHHHHHHHhhcCCCeEEEEEec
Q 037961          107 SALHWFDLPQFYKQVKWVLKKPSGVIAAWTY  137 (262)
Q Consensus       107 ~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~  137 (262)
                      ..-      ..++.+.++|+ +||+++++..
T Consensus       239 ~G~------~~~~~~~~~l~-~~G~iv~~G~  262 (354)
T 2j8z_A          239 IGG------SYWEKNVNCLA-LDGRWVLYGL  262 (354)
T ss_dssp             SCG------GGHHHHHHHEE-EEEEEEECCC
T ss_pred             CCc------hHHHHHHHhcc-CCCEEEEEec
Confidence            542      35788899999 9999998664

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*

Probab=95.80  E-value=0.029  Score=48.09  Aligned_cols=101  Identities=14%  Similarity=0.078  Sum_probs=66.2

Q ss_pred             hCCCCCeEEEEcCc--ccHhHHHHHh-h-CCeEEEEcCCHHHHHHHhcCCCceEEeCCCCc-hhhhhhccCCCCceeeEE
Q 037961           30 KTPKRNLAWDVGTR--SGQAAASLAQ-I-YQHVIATDTSPKQLKFAIKLPNIRYQLTPTMS-ITELEQNVATQSSVDLVT  104 (262)
Q Consensus        30 ~~~~~~~vlDvGcG--~G~~~~~l~~-~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~D~V~  104 (262)
                      ...++.+||-.|+|  .|..+..++. . |++|+++|.+++.++.+++...-......... ...+.... ..+.+|+|+
T Consensus       167 ~~~~g~~vlV~Gagg~iG~~~~~~a~~~~Ga~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~d~vi  245 (347)
T 1jvb_A          167 SLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGADYVINASMQDPLAEIRRIT-ESKGVDAVI  245 (347)
T ss_dssp             TCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHT-TTSCEEEEE
T ss_pred             CCCCCCEEEEECCCccHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCCEEecCCCccHHHHHHHHh-cCCCceEEE
Confidence            34678899999998  4666666654 5 89999999999998888764222222221111 01122221 114799998


Q ss_pred             EccccccCChhHHHHHHHHhhcCCCeEEEEEec
Q 037961          105 IASALHWFDLPQFYKQVKWVLKKPSGVIAAWTY  137 (262)
Q Consensus       105 ~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~  137 (262)
                      .+..     ....++.+.++|+ +||+++++..
T Consensus       246 ~~~g-----~~~~~~~~~~~l~-~~G~iv~~g~  272 (347)
T 1jvb_A          246 DLNN-----SEKTLSVYPKALA-KQGKYVMVGL  272 (347)
T ss_dssp             ESCC-----CHHHHTTGGGGEE-EEEEEEECCS
T ss_pred             ECCC-----CHHHHHHHHHHHh-cCCEEEEECC
Confidence            6543     2457888899999 9999988654

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP}

Probab=95.73  E-value=0.034  Score=47.37  Aligned_cols=99  Identities=17%  Similarity=0.107  Sum_probs=64.9

Q ss_pred             CCCCCeEEEEcC--cccHhHHHHHh-hCCeEEEEcCCHHHHHHHhcCCCceEEeCCCCch-hhhhhccCCCCceeeEEEc
Q 037961           31 TPKRNLAWDVGT--RSGQAAASLAQ-IYQHVIATDTSPKQLKFAIKLPNIRYQLTPTMSI-TELEQNVATQSSVDLVTIA  106 (262)
Q Consensus        31 ~~~~~~vlDvGc--G~G~~~~~l~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~D~V~~~  106 (262)
                      ..++.+||-.|+  |.|..+..++. .|++|+++|.+++.++.+++...-.......... ..+.... ....+|+|+.+
T Consensus       143 ~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~~Vi~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~i~~~~-~~~~~d~vi~~  221 (333)
T 1wly_A          143 VKPGDYVLIHAAAGGMGHIMVPWARHLGATVIGTVSTEEKAETARKLGCHHTINYSTQDFAEVVREIT-GGKGVDVVYDS  221 (333)
T ss_dssp             CCTTCEEEETTTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHH-TTCCEEEEEEC
T ss_pred             CCCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCCEEEECCCHHHHHHHHHHh-CCCCCeEEEEC
Confidence            357889999995  45777777665 5899999999998888877642212222211111 1122211 23469999965


Q ss_pred             cccccCChhHHHHHHHHhhcCCCeEEEEEec
Q 037961          107 SALHWFDLPQFYKQVKWVLKKPSGVIAAWTY  137 (262)
Q Consensus       107 ~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~  137 (262)
                      ..-      ..++.+.++|+ +||+++.+..
T Consensus       222 ~g~------~~~~~~~~~l~-~~G~iv~~g~  245 (333)
T 1wly_A          222 IGK------DTLQKSLDCLR-PRGMCAAYGH  245 (333)
T ss_dssp             SCT------TTHHHHHHTEE-EEEEEEECCC
T ss_pred             CcH------HHHHHHHHhhc-cCCEEEEEec
Confidence            442      56788999999 9999988654

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=95.72  E-value=0.058  Score=46.46  Aligned_cols=100  Identities=14%  Similarity=0.142  Sum_probs=67.6

Q ss_pred             CCCCCeEEEEcCcc-cHhHHHHHhh-CCe-EEEEcCCHHHHHHHhcCC-C-ceEEeCCCCchhh----hhhccCCCCcee
Q 037961           31 TPKRNLAWDVGTRS-GQAAASLAQI-YQH-VIATDTSPKQLKFAIKLP-N-IRYQLTPTMSITE----LEQNVATQSSVD  101 (262)
Q Consensus        31 ~~~~~~vlDvGcG~-G~~~~~l~~~-~~~-v~~vD~s~~~~~~a~~~~-~-~~~~~~~~~~~~~----~~~~~~~~~~~D  101 (262)
                      ..++.+||=.|+|. |.++.++++. |++ |+++|.+++-++.+++.. . +.+...+ ....+    +... .....+|
T Consensus       177 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l~~~~~~~~~~~-~~~~~~~~~v~~~-t~g~g~D  254 (363)
T 3m6i_A          177 VRLGDPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGRLKFAKEICPEVVTHKVER-LSAEESAKKIVES-FGGIEPA  254 (363)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHHCTTCEEEECCS-CCHHHHHHHHHHH-TSSCCCS
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhchhcccccccc-cchHHHHHHHHHH-hCCCCCC
Confidence            46778889999986 8888888875 776 999999999999888752 1 1221110 00011    1111 1245799


Q ss_pred             eEEEccccccCChhHHHHHHHHhhcCCCeEEEEEecC
Q 037961          102 LVTIASALHWFDLPQFYKQVKWVLKKPSGVIAAWTYT  138 (262)
Q Consensus       102 ~V~~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~~  138 (262)
                      +|+-...     -...++.+.++|+ +||++++....
T Consensus       255 vvid~~g-----~~~~~~~~~~~l~-~~G~iv~~G~~  285 (363)
T 3m6i_A          255 VALECTG-----VESSIAAAIWAVK-FGGKVFVIGVG  285 (363)
T ss_dssp             EEEECSC-----CHHHHHHHHHHSC-TTCEEEECCCC
T ss_pred             EEEECCC-----ChHHHHHHHHHhc-CCCEEEEEccC
Confidence            9995433     2457899999999 99999986543

>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*

Probab=95.72  E-value=0.071  Score=45.51  Aligned_cols=101  Identities=19%  Similarity=0.181  Sum_probs=65.5

Q ss_pred             CCCCCeEEEEcCcc-cHhHHHHHh-h-CCeEEEEcCCHHHHHHHhcCCCceEEeCCCCc-hhhhhhccCCCCceeeEEEc
Q 037961           31 TPKRNLAWDVGTRS-GQAAASLAQ-I-YQHVIATDTSPKQLKFAIKLPNIRYQLTPTMS-ITELEQNVATQSSVDLVTIA  106 (262)
Q Consensus        31 ~~~~~~vlDvGcG~-G~~~~~l~~-~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~D~V~~~  106 (262)
                      ..++.+||=+|+|+ |.++..+++ . +.+|+++|.+++-++.+++......+.....+ .+.+.... ....+|.++..
T Consensus       161 ~~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~~~r~~~~~~~Ga~~~i~~~~~~~~~~v~~~t-~g~g~d~~~~~  239 (348)
T 4eez_A          161 VKPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDINQDKLNLAKKIGADVTINSGDVNPVDEIKKIT-GGLGVQSAIVC  239 (348)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHHHTTCSEEEEC-CCCHHHHHHHHT-TSSCEEEEEEC
T ss_pred             CCCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECcHHHhhhhhhcCCeEEEeCCCCCHHHHhhhhc-CCCCceEEEEe
Confidence            46788999999987 445555554 3 78999999999999888876443343332111 11222221 23357776643


Q ss_pred             cccccCChhHHHHHHHHhhcCCCeEEEEEecC
Q 037961          107 SALHWFDLPQFYKQVKWVLKKPSGVIAAWTYT  138 (262)
Q Consensus       107 ~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~~  138 (262)
                      .     .-...+..+.++|+ ++|++++....
T Consensus       240 ~-----~~~~~~~~~~~~l~-~~G~~v~~g~~  265 (348)
T 4eez_A          240 A-----VARIAFEQAVASLK-PMGKMVAVAVP  265 (348)
T ss_dssp             C-----SCHHHHHHHHHTEE-EEEEEEECCCC
T ss_pred             c-----cCcchhheeheeec-CCceEEEEecc
Confidence            2     23567889999999 99999886543

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*

Probab=95.71  E-value=0.051  Score=46.80  Aligned_cols=93  Identities=18%  Similarity=0.214  Sum_probs=64.1

Q ss_pred             CeEEEEcCcc-cHhH-HHHH-h-hCCe-EEEEcCCHH---HHHHHhcCCCceEEeCCCCchhhhhhccCCCCceeeEEEc
Q 037961           35 NLAWDVGTRS-GQAA-ASLA-Q-IYQH-VIATDTSPK---QLKFAIKLPNIRYQLTPTMSITELEQNVATQSSVDLVTIA  106 (262)
Q Consensus        35 ~~vlDvGcG~-G~~~-~~l~-~-~~~~-v~~vD~s~~---~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~  106 (262)
                      .+||-+|+|. |.++ .+++ + .|++ |+++|.+++   -++.++++. ............++...   .+.+|+|+-.
T Consensus       174 ~~VlV~GaG~vG~~a~iqla~k~~Ga~~Vi~~~~~~~~~~~~~~~~~lG-a~~v~~~~~~~~~i~~~---~gg~Dvvid~  249 (357)
T 2b5w_A          174 SSAFVLGNGSLGLLTLAMLKVDDKGYENLYCLGRRDRPDPTIDIIEELD-ATYVDSRQTPVEDVPDV---YEQMDFIYEA  249 (357)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHCTTCCCEEEEEECCCSSCHHHHHHHHTT-CEEEETTTSCGGGHHHH---SCCEEEEEEC
T ss_pred             CEEEEECCCHHHHHHHHHHHHHHcCCcEEEEEeCCcccHHHHHHHHHcC-CcccCCCccCHHHHHHh---CCCCCEEEEC
Confidence            8899999875 8888 8888 6 4777 999999988   888888753 33332211111112223   2379999854


Q ss_pred             cccccCChhHHHHHHHHhhcCCCeEEEEEec
Q 037961          107 SALHWFDLPQFYKQVKWVLKKPSGVIAAWTY  137 (262)
Q Consensus       107 ~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~  137 (262)
                      ..     ....++.+.++|+ +||++++...
T Consensus       250 ~g-----~~~~~~~~~~~l~-~~G~iv~~g~  274 (357)
T 2b5w_A          250 TG-----FPKHAIQSVQALA-PNGVGALLGV  274 (357)
T ss_dssp             SC-----CHHHHHHHHHHEE-EEEEEEECCC
T ss_pred             CC-----ChHHHHHHHHHHh-cCCEEEEEeC
Confidence            33     2357889999999 9999988554

>1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A

Probab=95.70  E-value=0.16  Score=43.46  Aligned_cols=103  Identities=12%  Similarity=0.120  Sum_probs=66.2

Q ss_pred             CCCCeEEEEcCcccHhHHHHHhh--CCeEEEEcCCHHHHHHHhc----C-----------------------CCceEEeC
Q 037961           32 PKRNLAWDVGTRSGQAAASLAQI--YQHVIATDTSPKQLKFAIK----L-----------------------PNIRYQLT   82 (262)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~----~-----------------------~~~~~~~~   82 (262)
                      .+...|+.+|||.......+...  +..++-||. |++++.-++    .                       .+..++..
T Consensus        96 ~~~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~-P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~v~~  174 (334)
T 1rjd_A           96 NEKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDY-NESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAAC  174 (334)
T ss_dssp             CSSEEEEEETCTTCCTHHHHHHHCTTEEEEEEEC-HHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEEC
T ss_pred             CCCcEEEEeCCCCccHHHHhcCcCCCCEEEECCC-HHHHHHHHHHhhhccchhhhcccccccccccccccCCCceEEEec
Confidence            35678999999999999998875  345666776 666654332    1                       34555655


Q ss_pred             CCCchhh----hhhccCCCCceeeEEEccccccCChhH---HHHHHHHhhcCCCeEEEEEecC
Q 037961           83 PTMSITE----LEQNVATQSSVDLVTIASALHWFDLPQ---FYKQVKWVLKKPSGVIAAWTYT  138 (262)
Q Consensus        83 ~~~~~~~----~~~~~~~~~~~D~V~~~~~~~~~d~~~---~l~~~~r~Lk~pgG~l~i~~~~  138 (262)
                      |-....-    +...+ ......++++-.++++++++.   +++.+.+.+  |+|.++++...
T Consensus       175 DL~d~~w~~~ll~~~~-d~~~Ptl~iaEgvL~YL~~~~~~~ll~~ia~~~--~~~~~v~~e~i  234 (334)
T 1rjd_A          175 DLNDITETTRLLDVCT-KREIPTIVISECLLCYMHNNESQLLINTIMSKF--SHGLWISYDPI  234 (334)
T ss_dssp             CTTCHHHHHHHHHTTC-CTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHC--SSEEEEEEEEC
T ss_pred             CCCCcHHHHHHHHhcC-CCCCCEEEEEcchhhCCCHHHHHHHHHHHHhhC--CCcEEEEEecc
Confidence            5111111    23333 345678999999999997776   555565554  68888766543

>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A*

Probab=95.53  E-value=0.074  Score=45.69  Aligned_cols=98  Identities=10%  Similarity=0.016  Sum_probs=64.8

Q ss_pred             CCCC--CeEEEEcC--cccHhHHHHHh-hCC-eEEEEcCCHHHHHHHhc-CCCceEEeCCCCch-hhhhhccCCCCceee
Q 037961           31 TPKR--NLAWDVGT--RSGQAAASLAQ-IYQ-HVIATDTSPKQLKFAIK-LPNIRYQLTPTMSI-TELEQNVATQSSVDL  102 (262)
Q Consensus        31 ~~~~--~~vlDvGc--G~G~~~~~l~~-~~~-~v~~vD~s~~~~~~a~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~D~  102 (262)
                      ..++  .+||-.|+  |.|..+..++. .|+ +|+++|.+++.++.+++ .............. ..+...  ..+.+|+
T Consensus       156 ~~~g~~~~vlI~GasggiG~~~~~~a~~~Ga~~Vi~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~--~~~~~d~  233 (357)
T 2zb4_A          156 ITAGSNKTMVVSGAAGACGSVAGQIGHFLGCSRVVGICGTHEKCILLTSELGFDAAINYKKDNVAEQLRES--CPAGVDV  233 (357)
T ss_dssp             CCTTSCCEEEESSTTBHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSCCSEEEETTTSCHHHHHHHH--CTTCEEE
T ss_pred             CCCCCccEEEEECCCcHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCCceEEecCchHHHHHHHHh--cCCCCCE
Confidence            4567  89999998  34777766665 588 99999999988888775 42212222211111 112222  1237999


Q ss_pred             EEEccccccCChhHHHHHHHHhhcCCCeEEEEEec
Q 037961          103 VTIASALHWFDLPQFYKQVKWVLKKPSGVIAAWTY  137 (262)
Q Consensus       103 V~~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~  137 (262)
                      |+.+..      ...++.+.++|+ +||+++++..
T Consensus       234 vi~~~G------~~~~~~~~~~l~-~~G~iv~~G~  261 (357)
T 2zb4_A          234 YFDNVG------GNISDTVISQMN-ENSHIILCGQ  261 (357)
T ss_dssp             EEESCC------HHHHHHHHHTEE-EEEEEEECCC
T ss_pred             EEECCC------HHHHHHHHHHhc-cCcEEEEECC
Confidence            996655      267889999999 9999988553

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=95.38  E-value=0.014  Score=50.52  Aligned_cols=98  Identities=14%  Similarity=0.132  Sum_probs=65.0

Q ss_pred             CCCCCeEEEEcCcc-cHhHHHHHh-hCCeEEEEcCCHHHHHHHhcCCCceEEeCCCCchhhh-hhccCCCCceeeEEEcc
Q 037961           31 TPKRNLAWDVGTRS-GQAAASLAQ-IYQHVIATDTSPKQLKFAIKLPNIRYQLTPTMSITEL-EQNVATQSSVDLVTIAS  107 (262)
Q Consensus        31 ~~~~~~vlDvGcG~-G~~~~~l~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~D~V~~~~  107 (262)
                      ..++.+||-+|+|. |.++.++++ .|++|+++|.++.-++.+++...-.++.....  .+. +.+  . +.+|+|+-..
T Consensus       177 ~~~g~~VlV~GaG~vG~~~~qlak~~Ga~Vi~~~~~~~~~~~~~~lGa~~v~~~~~~--~~~~~~~--~-~~~D~vid~~  251 (360)
T 1piw_A          177 CGPGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMKMGADHYIATLEE--GDWGEKY--F-DTFDLIVVCA  251 (360)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTCSEEEEGGGT--SCHHHHS--C-SCEEEEEECC
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCCCEEEcCcCc--hHHHHHh--h-cCCCEEEECC
Confidence            45788999999975 778888776 48899999999998888886532222322110  011 122  1 4799998554


Q ss_pred             ccccCChhHHHHHHHHhhcCCCeEEEEEec
Q 037961          108 ALHWFDLPQFYKQVKWVLKKPSGVIAAWTY  137 (262)
Q Consensus       108 ~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~  137 (262)
                      .--   ....++.+.++|+ +||+++.+..
T Consensus       252 g~~---~~~~~~~~~~~l~-~~G~iv~~g~  277 (360)
T 1piw_A          252 SSL---TDIDFNIMPKAMK-VGGRIVSISI  277 (360)
T ss_dssp             SCS---TTCCTTTGGGGEE-EEEEEEECCC
T ss_pred             CCC---cHHHHHHHHHHhc-CCCEEEEecC
Confidence            320   0234567788999 9999988554

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}

Probab=95.34  E-value=0.019  Score=48.55  Aligned_cols=87  Identities=16%  Similarity=-0.022  Sum_probs=60.4

Q ss_pred             CCCCeEEEEcCcc-cHhHHHHHhh-CCeEEEEcCCHHHHHHHhcCCCceEEeCCCCchhhhhhccCCCCceeeEEEcccc
Q 037961           32 PKRNLAWDVGTRS-GQAAASLAQI-YQHVIATDTSPKQLKFAIKLPNIRYQLTPTMSITELEQNVATQSSVDLVTIASAL  109 (262)
Q Consensus        32 ~~~~~vlDvGcG~-G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~  109 (262)
                      +++.+||=.|+|. |.++.++++. |++|++++ +++-++.++++. ......+      .+.+   ...+|+|+-...-
T Consensus       141 ~~g~~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~-~~~~~~~~~~lG-a~~v~~d------~~~v---~~g~Dvv~d~~g~  209 (315)
T 3goh_A          141 TKQREVLIVGFGAVNNLLTQMLNNAGYVVDLVS-ASLSQALAAKRG-VRHLYRE------PSQV---TQKYFAIFDAVNS  209 (315)
T ss_dssp             CSCCEEEEECCSHHHHHHHHHHHHHTCEEEEEC-SSCCHHHHHHHT-EEEEESS------GGGC---CSCEEEEECC---
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEE-ChhhHHHHHHcC-CCEEEcC------HHHh---CCCccEEEECCCc
Confidence            5789999999975 8888888874 88999999 999888888752 2322211      2223   5679999844321


Q ss_pred             ccCChhHHHHHHHHhhcCCCeEEEEEe
Q 037961          110 HWFDLPQFYKQVKWVLKKPSGVIAAWT  136 (262)
Q Consensus       110 ~~~d~~~~l~~~~r~Lk~pgG~l~i~~  136 (262)
                            ..+..+.++|+ +||+++...
T Consensus       210 ------~~~~~~~~~l~-~~G~~v~~g  229 (315)
T 3goh_A          210 ------QNAAALVPSLK-ANGHIICIQ  229 (315)
T ss_dssp             ----------TTGGGEE-EEEEEEEEC
T ss_pred             ------hhHHHHHHHhc-CCCEEEEEe
Confidence                  22356789999 999999864

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D

Probab=95.26  E-value=0.038  Score=46.32  Aligned_cols=94  Identities=16%  Similarity=0.117  Sum_probs=63.4

Q ss_pred             CCCCCeEEEEcC--cccHhHHHHHh-hCCeEEEEcCCHHHHHHHhcCCCceEEeCCCCchhhhhhccCCCCceeeEEEcc
Q 037961           31 TPKRNLAWDVGT--RSGQAAASLAQ-IYQHVIATDTSPKQLKFAIKLPNIRYQLTPTMSITELEQNVATQSSVDLVTIAS  107 (262)
Q Consensus        31 ~~~~~~vlDvGc--G~G~~~~~l~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~  107 (262)
                      ..++.+||-.|+  |.|..+.++++ .|++|++++.+++.++.+++...-.......  ..+..+. +  +.+|+|+- .
T Consensus       123 ~~~g~~vlV~Ga~G~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga~~~~~~~~--~~~~~~~-~--~~~d~vid-~  196 (302)
T 1iz0_A          123 ARPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLALGAEEAATYAE--VPERAKA-W--GGLDLVLE-V  196 (302)
T ss_dssp             CCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHHTTCSEEEEGGG--HHHHHHH-T--TSEEEEEE-C
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcCCCEEEECCc--chhHHHH-h--cCceEEEE-C
Confidence            567889999998  35778877776 4889999999999888887653222222110  0111111 1  56999986 4


Q ss_pred             ccccCChhHHHHHHHHhhcCCCeEEEEEec
Q 037961          108 ALHWFDLPQFYKQVKWVLKKPSGVIAAWTY  137 (262)
Q Consensus       108 ~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~  137 (262)
                      .-      ..++.+.+.|+ +||+++.+..
T Consensus       197 g~------~~~~~~~~~l~-~~G~~v~~g~  219 (302)
T 1iz0_A          197 RG------KEVEESLGLLA-HGGRLVYIGA  219 (302)
T ss_dssp             SC------TTHHHHHTTEE-EEEEEEEC--
T ss_pred             CH------HHHHHHHHhhc-cCCEEEEEeC
Confidence            32      46788999999 9999987553

>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A

Probab=95.23  E-value=0.085  Score=47.06  Aligned_cols=99  Identities=12%  Similarity=0.107  Sum_probs=66.7

Q ss_pred             CCCCCeEEEEcC-c-ccHhHHHHHhh-CCeEEEEcCCHHHHHHHhcCCCceEEeCCCCch------------------hh
Q 037961           31 TPKRNLAWDVGT-R-SGQAAASLAQI-YQHVIATDTSPKQLKFAIKLPNIRYQLTPTMSI------------------TE   89 (262)
Q Consensus        31 ~~~~~~vlDvGc-G-~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~------------------~~   89 (262)
                      ..++.+||=+|+ | .|.++.++++. |+++++++.++.-++.+++...-.++.......                  ..
T Consensus       226 ~~~g~~VlV~GasG~vG~~avqlak~~Ga~vi~~~~~~~~~~~~~~lGa~~vi~~~~~d~~~~~~~~~~~~~~~~~~~~~  305 (456)
T 3krt_A          226 MKQGDNVLIWGASGGLGSYATQFALAGGANPICVVSSPQKAEICRAMGAEAIIDRNAEGYRFWKDENTQDPKEWKRFGKR  305 (456)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHTCCEEEETTTTTCCSEEETTEECHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHcCCeEEEEECCHHHHHHHHhhCCcEEEecCcCcccccccccccchHHHHHHHHH
Confidence            357889999998 4 48888888774 899999999999999888753222222211000                  11


Q ss_pred             hhhccCCCCceeeEEEccccccCChhHHHHHHHHhhcCCCeEEEEEec
Q 037961           90 LEQNVATQSSVDLVTIASALHWFDLPQFYKQVKWVLKKPSGVIAAWTY  137 (262)
Q Consensus        90 ~~~~~~~~~~~D~V~~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~  137 (262)
                      +..+. ....+|+|+-...      ...+..+.++|+ +||++++...
T Consensus       306 i~~~t-~g~g~Dvvid~~G------~~~~~~~~~~l~-~~G~iv~~G~  345 (456)
T 3krt_A          306 IRELT-GGEDIDIVFEHPG------RETFGASVFVTR-KGGTITTCAS  345 (456)
T ss_dssp             HHHHH-TSCCEEEEEECSC------HHHHHHHHHHEE-EEEEEEESCC
T ss_pred             HHHHh-CCCCCcEEEEcCC------chhHHHHHHHhh-CCcEEEEEec
Confidence            11111 2347999985433      257888999999 9999998654

>3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A*

Probab=95.17  E-value=0.063  Score=45.41  Aligned_cols=92  Identities=14%  Similarity=0.039  Sum_probs=63.7

Q ss_pred             eEEEEcC-c-ccHhHHHHHhh-CCeEEEEcCCHHHHHHHhcCCCceEEeCCCCchhhhhhccCCCCceeeEEEccccccC
Q 037961           36 LAWDVGT-R-SGQAAASLAQI-YQHVIATDTSPKQLKFAIKLPNIRYQLTPTMSITELEQNVATQSSVDLVTIASALHWF  112 (262)
Q Consensus        36 ~vlDvGc-G-~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~~~~  112 (262)
                      .||=.|+ | .|.++.++++. |++|++++.+++-++.+++...-..+......  ....  +..+.+|+|+-...    
T Consensus       149 ~VlV~Ga~G~vG~~aiqla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~--~~~~--~~~~~~d~v~d~~g----  220 (324)
T 3nx4_A          149 EVVVTGASGGVGSTAVALLHKLGYQVAAVSGRESTHGYLKSLGANRILSRDEFA--ESRP--LEKQLWAGAIDTVG----  220 (324)
T ss_dssp             CEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHHHHTCSEEEEGGGSS--CCCS--SCCCCEEEEEESSC----
T ss_pred             eEEEECCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCCEEEecCCHH--HHHh--hcCCCccEEEECCC----
Confidence            3899997 4 58888888875 88999999999999998875322233222110  0111  23457999885433    


Q ss_pred             ChhHHHHHHHHhhcCCCeEEEEEecC
Q 037961          113 DLPQFYKQVKWVLKKPSGVIAAWTYT  138 (262)
Q Consensus       113 d~~~~l~~~~r~Lk~pgG~l~i~~~~  138 (262)
                        ...++.+.+.|+ ++|+++.....
T Consensus       221 --~~~~~~~~~~l~-~~G~iv~~G~~  243 (324)
T 3nx4_A          221 --DKVLAKVLAQMN-YGGCVAACGLA  243 (324)
T ss_dssp             --HHHHHHHHHTEE-EEEEEEECCCT
T ss_pred             --cHHHHHHHHHHh-cCCEEEEEecC
Confidence              238899999999 99999986543

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans}

Probab=95.17  E-value=0.078  Score=45.35  Aligned_cols=96  Identities=15%  Similarity=0.042  Sum_probs=64.8

Q ss_pred             CCCCeEEEEcC-c-ccHhHHHHHhh-CCeEEEEcCCHHHHHHHhcCCCceEEeCCCCchhhhhhccCCCCceeeEEEccc
Q 037961           32 PKRNLAWDVGT-R-SGQAAASLAQI-YQHVIATDTSPKQLKFAIKLPNIRYQLTPTMSITELEQNVATQSSVDLVTIASA  108 (262)
Q Consensus        32 ~~~~~vlDvGc-G-~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~  108 (262)
                      .++.+||-+|+ | .|.++.++++. |++|+++ .+++-++.+++.. ...+..+.-....+.... ....+|+|+-+..
T Consensus       149 ~~g~~VlV~Ga~g~iG~~~~q~a~~~Ga~Vi~~-~~~~~~~~~~~lG-a~~i~~~~~~~~~~~~~~-~~~g~D~vid~~g  225 (343)
T 3gaz_A          149 QDGQTVLIQGGGGGVGHVAIQIALARGARVFAT-ARGSDLEYVRDLG-ATPIDASREPEDYAAEHT-AGQGFDLVYDTLG  225 (343)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEE-ECHHHHHHHHHHT-SEEEETTSCHHHHHHHHH-TTSCEEEEEESSC
T ss_pred             CCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEE-eCHHHHHHHHHcC-CCEeccCCCHHHHHHHHh-cCCCceEEEECCC
Confidence            57889999994 4 48888888774 8899999 8999888888752 222332210011122221 2346999986543


Q ss_pred             cccCChhHHHHHHHHhhcCCCeEEEEEec
Q 037961          109 LHWFDLPQFYKQVKWVLKKPSGVIAAWTY  137 (262)
Q Consensus       109 ~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~  137 (262)
                            ...+..+.+.|+ +||++++...
T Consensus       226 ------~~~~~~~~~~l~-~~G~iv~~g~  247 (343)
T 3gaz_A          226 ------GPVLDASFSAVK-RFGHVVSCLG  247 (343)
T ss_dssp             ------THHHHHHHHHEE-EEEEEEESCC
T ss_pred             ------cHHHHHHHHHHh-cCCeEEEEcc
Confidence                  257889999999 9999988543

>2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens}

Probab=95.14  E-value=0.073  Score=44.77  Aligned_cols=74  Identities=12%  Similarity=0.088  Sum_probs=53.3

Q ss_pred             CCCeEEEEcCcccHhHHHHHhhCCeE---EEEcCCHHHHHHHhc-CCCceEEeCC--CCchhhhhhccCCCCceeeEEEc
Q 037961           33 KRNLAWDVGTRSGQAAASLAQIYQHV---IATDTSPKQLKFAIK-LPNIRYQLTP--TMSITELEQNVATQSSVDLVTIA  106 (262)
Q Consensus        33 ~~~~vlDvGcG~G~~~~~l~~~~~~v---~~vD~s~~~~~~a~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~D~V~~~  106 (262)
                      ...+++|+-||.|.++..+...|.++   .++|+++..++..+. .++..+..+|  .+...++..    .+.+|+|+..
T Consensus        15 ~~~~vidLFaG~GG~~~g~~~aG~~~~~v~a~E~d~~a~~ty~~N~~~~~~~~~DI~~i~~~~i~~----~~~~Dll~gg   90 (295)
T 2qrv_A           15 KPIRVLSLFDGIATGLLVLKDLGIQVDRYIASEVCEDSITVGMVRHQGKIMYVGDVRSVTQKHIQE----WGPFDLVIGG   90 (295)
T ss_dssp             CCEEEEEETCTTTHHHHHHHHTTBCEEEEEEECCCHHHHHHHHHHTTTCEEEECCGGGCCHHHHHH----TCCCSEEEEC
T ss_pred             CCCEEEEeCcCccHHHHHHHHCCCccceEEEEECCHHHHHHHHHhCCCCceeCCChHHccHHHhcc----cCCcCEEEec
Confidence            45689999999999999998888765   899999998886554 4555667777  332222221    1469999987


Q ss_pred             cccc
Q 037961          107 SALH  110 (262)
Q Consensus       107 ~~~~  110 (262)
                      ..+.
T Consensus        91 pPCQ   94 (295)
T 2qrv_A           91 SPCN   94 (295)
T ss_dssp             CCCG
T ss_pred             CCCc
Confidence            5544

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*

Probab=95.11  E-value=0.033  Score=48.01  Aligned_cols=94  Identities=17%  Similarity=0.156  Sum_probs=63.1

Q ss_pred             CCCeEEEEcCcc-cHhHHHHHh-hCCeEEEEcCCHHHHHHHh-cCCCceEEeCCCCchhhhhhccCCCCceeeEEEcccc
Q 037961           33 KRNLAWDVGTRS-GQAAASLAQ-IYQHVIATDTSPKQLKFAI-KLPNIRYQLTPTMSITELEQNVATQSSVDLVTIASAL  109 (262)
Q Consensus        33 ~~~~vlDvGcG~-G~~~~~l~~-~~~~v~~vD~s~~~~~~a~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~  109 (262)
                      ++.+||-+|+|. |.++.++++ .|++|+++|.+++-++.++ +...-.++....  ...+...   .+.+|+|+-...-
T Consensus       180 ~g~~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~~~~~~~~~~~~~lGa~~vi~~~~--~~~~~~~---~~g~D~vid~~g~  254 (357)
T 2cf5_A          180 PGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSNKKREEALQDLGADDYVIGSD--QAKMSEL---ADSLDYVIDTVPV  254 (357)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSTTHHHHHHTTSCCSCEEETTC--HHHHHHS---TTTEEEEEECCCS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHcCCceeecccc--HHHHHHh---cCCCCEEEECCCC
Confidence            788999999875 777777776 4889999999998888877 442222222221  0112222   1369999854331


Q ss_pred             ccCChhHHHHHHHHhhcCCCeEEEEEec
Q 037961          110 HWFDLPQFYKQVKWVLKKPSGVIAAWTY  137 (262)
Q Consensus       110 ~~~d~~~~l~~~~r~Lk~pgG~l~i~~~  137 (262)
                           ...++.+.++|+ +||+++.+..
T Consensus       255 -----~~~~~~~~~~l~-~~G~iv~~G~  276 (357)
T 2cf5_A          255 -----HHALEPYLSLLK-LDGKLILMGV  276 (357)
T ss_dssp             -----CCCSHHHHTTEE-EEEEEEECSC
T ss_pred             -----hHHHHHHHHHhc-cCCEEEEeCC
Confidence                 234677889999 9999998654

>3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica}

Probab=94.95  E-value=0.098  Score=44.65  Aligned_cols=88  Identities=15%  Similarity=0.049  Sum_probs=59.4

Q ss_pred             CCCeEEEEcCcccHhHHHHHhhCC--e-E-EEEcCCHHHHHHHhcC-CCceEEeCC--CCchhhhhhccCCCCceeeEEE
Q 037961           33 KRNLAWDVGTRSGQAAASLAQIYQ--H-V-IATDTSPKQLKFAIKL-PNIRYQLTP--TMSITELEQNVATQSSVDLVTI  105 (262)
Q Consensus        33 ~~~~vlDvGcG~G~~~~~l~~~~~--~-v-~~vD~s~~~~~~a~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~D~V~~  105 (262)
                      ...+++|+-||.|.++..+...|.  + + .++|+++..++..+.+ +.. ...+|  .+...   ++  +...+|+++.
T Consensus         9 ~~~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~~ty~~N~~~~-~~~~DI~~~~~~---~i--~~~~~Dil~g   82 (327)
T 3qv2_A            9 KQVNVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYSKNFKEE-VQVKNLDSISIK---QI--ESLNCNTWFM   82 (327)
T ss_dssp             CCEEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHHHHHHHHHCCC-CBCCCTTTCCHH---HH--HHTCCCEEEE
T ss_pred             CCCEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHHHHHHHHCCCC-cccCChhhcCHH---Hh--ccCCCCEEEe
Confidence            445799999999999999988873  5 5 6999999998876653 333 44455  22222   22  2236899998


Q ss_pred             ccccccC------------Chh-HHHHHHHH-hhc
Q 037961          106 ASALHWF------------DLP-QFYKQVKW-VLK  126 (262)
Q Consensus       106 ~~~~~~~------------d~~-~~l~~~~r-~Lk  126 (262)
                      +..++-+            |.. .++.++.+ +++
T Consensus        83 gpPCQ~fs~S~ag~~~~~~d~r~~L~~~~~r~~i~  117 (327)
T 3qv2_A           83 SPPCQPYNNSIMSKHKDINDPRAKSVLHLYRDILP  117 (327)
T ss_dssp             CCCCTTCSHHHHTTTCTTTCGGGHHHHHHHHTTGG
T ss_pred             cCCccCcccccCCCCCCCccccchhHHHHHHHHHH
Confidence            7665533            333 36777777 664

>3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A*

Probab=94.91  E-value=0.2  Score=41.13  Aligned_cols=118  Identities=11%  Similarity=0.107  Sum_probs=73.6

Q ss_pred             CCCCeEEEEcCcccHhHHHHHhh---------CCeEEEEc-----CCH----------------------HHHHHHh---
Q 037961           32 PKRNLAWDVGTRSGQAAASLAQI---------YQHVIATD-----TSP----------------------KQLKFAI---   72 (262)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~---------~~~v~~vD-----~s~----------------------~~~~~a~---   72 (262)
                      .-...|+|+||-.|..+..++..         ..+|++.|     +.+                      +.++...   
T Consensus        68 ~vpG~ivE~GV~rG~S~~~~a~~~~~l~~~~~~r~v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~~~~l~~~l~~~  147 (257)
T 3tos_A           68 DVPGVIMEFGVRFGRHLGTFAALRGVYEPYNPLRRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPAYLKEVLDAH  147 (257)
T ss_dssp             TSCSEEEEECCTTCHHHHHHHHHHHHHCTTCTTCCEEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTHHHHHHHHHHHH
T ss_pred             CCCCeEEEEecccCHHHHHHHHHHHHhcccCCCCEEEEEECCCCCCCCccccccccccccCcccccchhHHHHHHHHHHH
Confidence            34567899999999988886541         36899988     432                      1122110   


Q ss_pred             ----c----CCCceEEeCC-CCchhhhhhc--cCCCCceeeEEEccccccCChhHHHHHHHHhhcCCCeEEEEEecCCCc
Q 037961           73 ----K----LPNIRYQLTP-TMSITELEQN--VATQSSVDLVTIASALHWFDLPQFYKQVKWVLKKPSGVIAAWTYTMPE  141 (262)
Q Consensus        73 ----~----~~~~~~~~~~-~~~~~~~~~~--~~~~~~~D~V~~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~~~~~  141 (262)
                          .    ..++.++.++ .   ..+..+  ..+..++|+|....-. +-.....++.+...|+ |||++++=.+..+.
T Consensus       148 ~~~~~~g~~~~~i~li~G~~~---dTL~~~l~~~~~~~~dlv~ID~D~-Y~~t~~~le~~~p~l~-~GGvIv~DD~~~~~  222 (257)
T 3tos_A          148 ECSDFFGHVTQRSVLVEGDVR---ETVPRYLAENPQTVIALAYFDLDL-YEPTKAVLEAIRPYLT-KGSIVAFDELDNPK  222 (257)
T ss_dssp             HTTSTTTTSCCSEEEEESCHH---HHHHHHHHHCTTCCEEEEEECCCC-HHHHHHHHHHHGGGEE-EEEEEEESSTTCTT
T ss_pred             hhhhhcCCCCCcEEEEEecHH---HHHHHHHHhCCCCceEEEEEcCcc-cchHHHHHHHHHHHhC-CCcEEEEcCCCCCC
Confidence                1    1567888876 1   111111  0245679999976531 2244557899999999 99999995555444


Q ss_pred             ccHHHHHhhccccc
Q 037961          142 INESVGAVFKPFDT  155 (262)
Q Consensus       142 ~~~~~~~~~~~~~~  155 (262)
                      +. ..++.+.++..
T Consensus       223 w~-G~~~A~~ef~~  235 (257)
T 3tos_A          223 WP-GENIAMRKVLG  235 (257)
T ss_dssp             CT-HHHHHHHHHTC
T ss_pred             Ch-HHHHHHHHHHh
Confidence            43 45566666554

>1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1

Probab=94.81  E-value=0.071  Score=45.17  Aligned_cols=98  Identities=10%  Similarity=-0.013  Sum_probs=62.9

Q ss_pred             CCCCC-eEEEEcC--cccHhHHHHHh-hCCeEEEEcCCHHHHHHHhcCCCceEEeCCCCchhhhhhccCCCCceeeEEEc
Q 037961           31 TPKRN-LAWDVGT--RSGQAAASLAQ-IYQHVIATDTSPKQLKFAIKLPNIRYQLTPTMSITELEQNVATQSSVDLVTIA  106 (262)
Q Consensus        31 ~~~~~-~vlDvGc--G~G~~~~~l~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~  106 (262)
                      ..++. +||-.|+  |.|..+.++++ .|++|++++.+++-++.+++...-..+............+  ..+.+|+|+-+
T Consensus       146 ~~~g~~~VlV~Ga~G~vG~~~~q~a~~~Ga~vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~--~~~~~d~vid~  223 (328)
T 1xa0_A          146 LTPERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLRVLGAKEVLAREDVMAERIRPL--DKQRWAAAVDP  223 (328)
T ss_dssp             CCGGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHHHTTCSEEEECC---------C--CSCCEEEEEEC
T ss_pred             CCCCCceEEEecCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCcEEEecCCcHHHHHHHh--cCCcccEEEEC
Confidence            34553 7899997  45888888876 4889999999988888888753222222211000011111  23469999855


Q ss_pred             cccccCChhHHHHHHHHhhcCCCeEEEEEec
Q 037961          107 SALHWFDLPQFYKQVKWVLKKPSGVIAAWTY  137 (262)
Q Consensus       107 ~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~  137 (262)
                      ..-      ..++.+.+.|+ +||+++++..
T Consensus       224 ~g~------~~~~~~~~~l~-~~G~~v~~G~  247 (328)
T 1xa0_A          224 VGG------RTLATVLSRMR-YGGAVAVSGL  247 (328)
T ss_dssp             STT------TTHHHHHHTEE-EEEEEEECSC
T ss_pred             CcH------HHHHHHHHhhc-cCCEEEEEee
Confidence            431      35788899999 9999998654

>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ...

Probab=94.77  E-value=0.11  Score=44.42  Aligned_cols=69  Identities=10%  Similarity=-0.095  Sum_probs=48.8

Q ss_pred             CCeEEEEcCcccHhHHHHHhhCCe-EEEEcCCHHHHHHHhcC-CCceEEeCCCCchhhhhhccC-CCCceeeEEEccccc
Q 037961           34 RNLAWDVGTRSGQAAASLAQIYQH-VIATDTSPKQLKFAIKL-PNIRYQLTPTMSITELEQNVA-TQSSVDLVTIASALH  110 (262)
Q Consensus        34 ~~~vlDvGcG~G~~~~~l~~~~~~-v~~vD~s~~~~~~a~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~D~V~~~~~~~  110 (262)
                      ..+++|+.||.|.++..+...|.+ +.++|+++..++..+.+ +...  .+|      +..+.. .-..+|+|+.+..++
T Consensus        11 ~~~~~dLFaG~Gg~~~g~~~aG~~~v~~~e~d~~a~~t~~~N~~~~~--~~D------i~~~~~~~~~~~D~l~~gpPCQ   82 (327)
T 2c7p_A           11 GLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNFGEKP--EGD------ITQVNEKTIPDHDILCAGFPCQ   82 (327)
T ss_dssp             TCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHHHHHHHHHSCCC--BSC------GGGSCGGGSCCCSEEEEECCCT
T ss_pred             CCcEEEECCCcCHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHcCCCC--cCC------HHHcCHhhCCCCCEEEECCCCC
Confidence            467999999999999999988876 66899999999877653 3322  344      222210 112589999876665

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*

Probab=94.74  E-value=0.066  Score=46.30  Aligned_cols=95  Identities=15%  Similarity=0.120  Sum_probs=63.0

Q ss_pred             CCCeEEEEcCcc-cHhHHHHHh-hCCeEEEEcCCHHHHHHHh-cCCCceEEeCCCCchhhhhhccCCCCceeeEEEcccc
Q 037961           33 KRNLAWDVGTRS-GQAAASLAQ-IYQHVIATDTSPKQLKFAI-KLPNIRYQLTPTMSITELEQNVATQSSVDLVTIASAL  109 (262)
Q Consensus        33 ~~~~vlDvGcG~-G~~~~~l~~-~~~~v~~vD~s~~~~~~a~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~  109 (262)
                      ++.+||-+|+|. |..+.++++ .|++|++++.+++-++.++ +...-.++....  ...+...   .+.+|+|+-....
T Consensus       187 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~lGa~~v~~~~~--~~~~~~~---~~~~D~vid~~g~  261 (366)
T 1yqd_A          187 PGKHIGIVGLGGLGHVAVKFAKAFGSKVTVISTSPSKKEEALKNFGADSFLVSRD--QEQMQAA---AGTLDGIIDTVSA  261 (366)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGHHHHHHTSCCSEEEETTC--HHHHHHT---TTCEEEEEECCSS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcCCceEEeccC--HHHHHHh---hCCCCEEEECCCc
Confidence            778899999875 777777776 4889999999999888876 443222222211  1122222   1369999865432


Q ss_pred             ccCChhHHHHHHHHhhcCCCeEEEEEecC
Q 037961          110 HWFDLPQFYKQVKWVLKKPSGVIAAWTYT  138 (262)
Q Consensus       110 ~~~d~~~~l~~~~r~Lk~pgG~l~i~~~~  138 (262)
                           ...++.+.++|+ +||+++.+...
T Consensus       262 -----~~~~~~~~~~l~-~~G~iv~~g~~  284 (366)
T 1yqd_A          262 -----VHPLLPLFGLLK-SHGKLILVGAP  284 (366)
T ss_dssp             -----CCCSHHHHHHEE-EEEEEEECCCC
T ss_pred             -----HHHHHHHHHHHh-cCCEEEEEccC
Confidence                 124567888999 99999886543

>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56

Probab=94.69  E-value=0.048  Score=48.09  Aligned_cols=42  Identities=17%  Similarity=0.166  Sum_probs=36.3

Q ss_pred             CCCCeEEEEcCcccHhHHHHH-hhC---CeEEEEcCCHHHHHHHhc
Q 037961           32 PKRNLAWDVGTRSGQAAASLA-QIY---QHVIATDTSPKQLKFAIK   73 (262)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~-~~~---~~v~~vD~s~~~~~~a~~   73 (262)
                      +++.+++||||+.|..+..++ ..+   .+|+++|++|...+..++
T Consensus       225 ~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~  270 (409)
T 2py6_A          225 SDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQN  270 (409)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHH
T ss_pred             CCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHH
Confidence            578899999999999999887 433   689999999999988764

>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A*

Probab=94.58  E-value=0.28  Score=42.34  Aligned_cols=96  Identities=10%  Similarity=0.015  Sum_probs=65.2

Q ss_pred             CCCCeEEEEcC-c-ccHhHHHHHhh-CCeEEEEcCCHHHHHHHhcCCCceEEeCCCCch-hhhhhccCCCCceeeEEEcc
Q 037961           32 PKRNLAWDVGT-R-SGQAAASLAQI-YQHVIATDTSPKQLKFAIKLPNIRYQLTPTMSI-TELEQNVATQSSVDLVTIAS  107 (262)
Q Consensus        32 ~~~~~vlDvGc-G-~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~D~V~~~~  107 (262)
                      .++.+||=+|+ | .|.++.++++. |++|+++. ++.-++.++++..-.++....... ..+..+  .++.+|+|+-..
T Consensus       163 ~~g~~VlV~Ga~G~vG~~a~qla~~~Ga~Vi~~~-~~~~~~~~~~lGa~~vi~~~~~~~~~~v~~~--t~g~~d~v~d~~  239 (371)
T 3gqv_A          163 SKPVYVLVYGGSTATATVTMQMLRLSGYIPIATC-SPHNFDLAKSRGAEEVFDYRAPNLAQTIRTY--TKNNLRYALDCI  239 (371)
T ss_dssp             SSCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEE-CGGGHHHHHHTTCSEEEETTSTTHHHHHHHH--TTTCCCEEEESS
T ss_pred             CCCcEEEEECCCcHHHHHHHHHHHHCCCEEEEEe-CHHHHHHHHHcCCcEEEECCCchHHHHHHHH--ccCCccEEEECC
Confidence            57788999998 3 68888888874 88999885 888888888764333443321111 112222  234599998543


Q ss_pred             ccccCChhHHHHHHHHhh-cCCCeEEEEEe
Q 037961          108 ALHWFDLPQFYKQVKWVL-KKPSGVIAAWT  136 (262)
Q Consensus       108 ~~~~~d~~~~l~~~~r~L-k~pgG~l~i~~  136 (262)
                      .     -...+..+.+.| + +||+++...
T Consensus       240 g-----~~~~~~~~~~~l~~-~~G~iv~~g  263 (371)
T 3gqv_A          240 T-----NVESTTFCFAAIGR-AGGHYVSLN  263 (371)
T ss_dssp             C-----SHHHHHHHHHHSCT-TCEEEEESS
T ss_pred             C-----chHHHHHHHHHhhc-CCCEEEEEe
Confidence            3     245788888999 8 899998754

>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A

Probab=94.57  E-value=0.11  Score=46.06  Aligned_cols=98  Identities=10%  Similarity=-0.002  Sum_probs=65.8

Q ss_pred             CCCCCeEEEEcC-c-ccHhHHHHHhh-CCeEEEEcCCHHHHHHHhcCCCceEEeCC--CCc-----------------hh
Q 037961           31 TPKRNLAWDVGT-R-SGQAAASLAQI-YQHVIATDTSPKQLKFAIKLPNIRYQLTP--TMS-----------------IT   88 (262)
Q Consensus        31 ~~~~~~vlDvGc-G-~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~--~~~-----------------~~   88 (262)
                      ..++.+||=.|+ | .|..+.++++. |+++++++.+++-++.+++...-..+...  .+.                 ..
T Consensus       218 ~~~g~~VlV~GasG~iG~~a~qla~~~Ga~vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (447)
T 4a0s_A          218 MKQGDIVLIWGASGGLGSYAIQFVKNGGGIPVAVVSSAQKEAAVRALGCDLVINRAELGITDDIADDPRRVVETGRKLAK  297 (447)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCCCEEEHHHHTCCTTGGGCHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCCEEEecccccccccccccccccchhhhHHHH
Confidence            457889999997 4 47788777774 89999999999999988876322222211  100                 01


Q ss_pred             hhhhccCCCCceeeEEEccccccCChhHHHHHHHHhhcCCCeEEEEEec
Q 037961           89 ELEQNVATQSSVDLVTIASALHWFDLPQFYKQVKWVLKKPSGVIAAWTY  137 (262)
Q Consensus        89 ~~~~~~~~~~~~D~V~~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~  137 (262)
                      .+....  ...+|+|+-+..-      ..++.+.++|+ +||++++...
T Consensus       298 ~v~~~~--g~g~Dvvid~~G~------~~~~~~~~~l~-~~G~iv~~G~  337 (447)
T 4a0s_A          298 LVVEKA--GREPDIVFEHTGR------VTFGLSVIVAR-RGGTVVTCGS  337 (447)
T ss_dssp             HHHHHH--SSCCSEEEECSCH------HHHHHHHHHSC-TTCEEEESCC
T ss_pred             HHHHHh--CCCceEEEECCCc------hHHHHHHHHHh-cCCEEEEEec
Confidence            111111  3469999865442      46788899999 9999998654

>4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda}

Probab=94.39  E-value=0.071  Score=45.66  Aligned_cols=87  Identities=11%  Similarity=0.068  Sum_probs=60.2

Q ss_pred             CeEEEEcCcccHhHHHHHhhCC--e-EEEEcCCHHHHHHHhc-CCCceEEeCC--CCchhhhhhccCCCCceeeEEEccc
Q 037961           35 NLAWDVGTRSGQAAASLAQIYQ--H-VIATDTSPKQLKFAIK-LPNIRYQLTP--TMSITELEQNVATQSSVDLVTIASA  108 (262)
Q Consensus        35 ~~vlDvGcG~G~~~~~l~~~~~--~-v~~vD~s~~~~~~a~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~D~V~~~~~  108 (262)
                      .+++|+-||.|.++..+...|.  + |.++|+++..++.-+. .+...+..+|  .+...+   +  +...+|+++.+..
T Consensus         4 ~~~idLFaG~GG~~~G~~~aG~~~~~v~a~e~d~~a~~ty~~N~~~~~~~~~DI~~~~~~~---~--~~~~~D~l~ggpP   78 (333)
T 4h0n_A            4 HKILELYSGIGGMHCAWKESGLDGEIVAAVDINTVANSVYKHNFPETNLLNRNIQQLTPQV---I--KKWNVDTILMSPP   78 (333)
T ss_dssp             EEEEEETCTTTHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTTSCEECCCGGGCCHHH---H--HHTTCCEEEECCC
T ss_pred             CEEEEECcCccHHHHHHHHcCCCceEEEEEeCCHHHHHHHHHhCCCCceeccccccCCHHH---h--ccCCCCEEEecCC
Confidence            4689999999999999988774  4 6799999999887664 4666666666  222222   2  2236899998766


Q ss_pred             cccC----------Chh-HHHHHHHHhhc
Q 037961          109 LHWF----------DLP-QFYKQVKWVLK  126 (262)
Q Consensus       109 ~~~~----------d~~-~~l~~~~r~Lk  126 (262)
                      ++-+          |.. .++-++.++++
T Consensus        79 CQ~fS~ag~~~~~~d~r~~L~~~~~r~i~  107 (333)
T 4h0n_A           79 CQPFTRNGKYLDDNDPRTNSFLYLIGILD  107 (333)
T ss_dssp             CCCSEETTEECCTTCTTSCCHHHHHHHGG
T ss_pred             CcchhhhhhccCCcCcccccHHHHHHHHH
Confidence            6532          222 36777777775

>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti}

Probab=94.19  E-value=0.098  Score=44.78  Aligned_cols=95  Identities=8%  Similarity=-0.045  Sum_probs=58.9

Q ss_pred             CeEEEE-cCc-ccHhHHHHHh-hCCeEEEEcCCHHHHHHHhcCCCceEEeCCCCch-hhhhhccCCCCceeeEEEccccc
Q 037961           35 NLAWDV-GTR-SGQAAASLAQ-IYQHVIATDTSPKQLKFAIKLPNIRYQLTPTMSI-TELEQNVATQSSVDLVTIASALH  110 (262)
Q Consensus        35 ~~vlDv-GcG-~G~~~~~l~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~D~V~~~~~~~  110 (262)
                      .+||=. |+| .|..+.++++ .|++|++++.+++-++.+++...-..+..+.... ..+.... ....+|+|+-+..- 
T Consensus       166 ~~vli~gg~g~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~v~~~~-~~~g~D~vid~~g~-  243 (349)
T 3pi7_A          166 KAFVMTAGASQLCKLIIGLAKEEGFRPIVTVRRDEQIALLKDIGAAHVLNEKAPDFEATLREVM-KAEQPRIFLDAVTG-  243 (349)
T ss_dssp             SEEEESSTTSHHHHHHHHHHHHHTCEEEEEESCGGGHHHHHHHTCSEEEETTSTTHHHHHHHHH-HHHCCCEEEESSCH-
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCCEEEECCcHHHHHHHHHHh-cCCCCcEEEECCCC-
Confidence            455543 555 3777777766 4899999999999998888753223333221111 1111111 12369999865442 


Q ss_pred             cCChhHHHHHHHHhhcCCCeEEEEEec
Q 037961          111 WFDLPQFYKQVKWVLKKPSGVIAAWTY  137 (262)
Q Consensus       111 ~~d~~~~l~~~~r~Lk~pgG~l~i~~~  137 (262)
                           ..+..+.+.|+ +||++++...
T Consensus       244 -----~~~~~~~~~l~-~~G~iv~~G~  264 (349)
T 3pi7_A          244 -----PLASAIFNAMP-KRARWIIYGR  264 (349)
T ss_dssp             -----HHHHHHHHHSC-TTCEEEECCC
T ss_pred             -----hhHHHHHhhhc-CCCEEEEEec
Confidence                 34578889999 9999998653

>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}

Probab=94.18  E-value=0.25  Score=41.71  Aligned_cols=92  Identities=21%  Similarity=0.107  Sum_probs=61.1

Q ss_pred             CCCCCeEEEEc-Ccc-cHhHHHHHhh-CCeEEEEcCCHHHHHHHhcCCCceEEeCCCCchhh-hhhccCCCCceeeEEEc
Q 037961           31 TPKRNLAWDVG-TRS-GQAAASLAQI-YQHVIATDTSPKQLKFAIKLPNIRYQLTPTMSITE-LEQNVATQSSVDLVTIA  106 (262)
Q Consensus        31 ~~~~~~vlDvG-cG~-G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~D~V~~~  106 (262)
                      ..++.+||=.| +|. |.++.++++. |++|++++ ++.-++.+++...-..+....   .+ +...   -..+|+|+-.
T Consensus       150 ~~~g~~vlV~Ga~G~vG~~a~q~a~~~Ga~vi~~~-~~~~~~~~~~lGa~~~i~~~~---~~~~~~~---~~g~D~v~d~  222 (321)
T 3tqh_A          150 VKQGDVVLIHAGAGGVGHLAIQLAKQKGTTVITTA-SKRNHAFLKALGAEQCINYHE---EDFLLAI---STPVDAVIDL  222 (321)
T ss_dssp             CCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEE-CHHHHHHHHHHTCSEEEETTT---SCHHHHC---CSCEEEEEES
T ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHHcCCEEEEEe-ccchHHHHHHcCCCEEEeCCC---cchhhhh---ccCCCEEEEC
Confidence            46788999886 664 8888888874 88999998 555577787653223333221   11 1111   1469999854


Q ss_pred             cccccCChhHHHHHHHHhhcCCCeEEEEEe
Q 037961          107 SALHWFDLPQFYKQVKWVLKKPSGVIAAWT  136 (262)
Q Consensus       107 ~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~  136 (262)
                      ..      ...+..+.++|+ +||+++...
T Consensus       223 ~g------~~~~~~~~~~l~-~~G~iv~~g  245 (321)
T 3tqh_A          223 VG------GDVGIQSIDCLK-ETGCIVSVP  245 (321)
T ss_dssp             SC------HHHHHHHGGGEE-EEEEEEECC
T ss_pred             CC------cHHHHHHHHhcc-CCCEEEEeC
Confidence            33      233488999999 999998854

>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens}

Probab=94.03  E-value=0.2  Score=43.30  Aligned_cols=98  Identities=13%  Similarity=-0.025  Sum_probs=62.3

Q ss_pred             CCCCCeEEEEc-Cc-ccHhHHHHHhh-CCeEEEEcCCHHHHHHHhcCCCceEEeCCCCchhhhhhccCCCCceeeEEEcc
Q 037961           31 TPKRNLAWDVG-TR-SGQAAASLAQI-YQHVIATDTSPKQLKFAIKLPNIRYQLTPTMSITELEQNVATQSSVDLVTIAS  107 (262)
Q Consensus        31 ~~~~~~vlDvG-cG-~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~  107 (262)
                      ..++.+||=.| +| .|..+.++++. |++|++++ ++.-++.+++...-..+.......  .+.+. ....+|+|+-+.
T Consensus       181 ~~~g~~VlV~Ga~G~vG~~~~qla~~~Ga~Vi~~~-~~~~~~~~~~lGa~~v~~~~~~~~--~~~~~-~~~g~D~vid~~  256 (375)
T 2vn8_A          181 NCTGKRVLILGASGGVGTFAIQVMKAWDAHVTAVC-SQDASELVRKLGADDVIDYKSGSV--EEQLK-SLKPFDFILDNV  256 (375)
T ss_dssp             TCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEE-CGGGHHHHHHTTCSEEEETTSSCH--HHHHH-TSCCBSEEEESS
T ss_pred             cCCCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEe-ChHHHHHHHHcCCCEEEECCchHH--HHHHh-hcCCCCEEEECC
Confidence            45778999999 45 48888888764 88999998 777788887653222232221111  11111 124699998553


Q ss_pred             ccccCChhHHHHHHHHhhcCCCeEEEEEec
Q 037961          108 ALHWFDLPQFYKQVKWVLKKPSGVIAAWTY  137 (262)
Q Consensus       108 ~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~  137 (262)
                      .-    ....++.+.+.|+ +||+++.+..
T Consensus       257 g~----~~~~~~~~~~~l~-~~G~iv~~g~  281 (375)
T 2vn8_A          257 GG----STETWAPDFLKKW-SGATYVTLVT  281 (375)
T ss_dssp             CT----THHHHGGGGBCSS-SCCEEEESCC
T ss_pred             CC----hhhhhHHHHHhhc-CCcEEEEeCC
Confidence            31    1235577788999 9999988653

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*

Probab=93.91  E-value=0.12  Score=44.52  Aligned_cols=93  Identities=15%  Similarity=0.111  Sum_probs=61.3

Q ss_pred             CCeEEEEcCcc-cHhHHHHHh-hCCeEEEEcCCH---HHHHHHhcCCCceEEeCCCCchhhhhhccCCCCceeeEEEccc
Q 037961           34 RNLAWDVGTRS-GQAAASLAQ-IYQHVIATDTSP---KQLKFAIKLPNIRYQLTPTMSITELEQNVATQSSVDLVTIASA  108 (262)
Q Consensus        34 ~~~vlDvGcG~-G~~~~~l~~-~~~~v~~vD~s~---~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~  108 (262)
                      +.+||-+|+|. |..+.++++ .|++|+++|.++   +-++.+++.. ......+.+. ..+...  . +.+|+|+.+..
T Consensus       181 g~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~~~g-a~~v~~~~~~-~~~~~~--~-~~~d~vid~~g  255 (366)
T 2cdc_A          181 CRKVLVVGTGPIGVLFTLLFRTYGLEVWMANRREPTEVEQTVIEETK-TNYYNSSNGY-DKLKDS--V-GKFDVIIDATG  255 (366)
T ss_dssp             TCEEEEESCHHHHHHHHHHHHHHTCEEEEEESSCCCHHHHHHHHHHT-CEEEECTTCS-HHHHHH--H-CCEEEEEECCC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCccchHHHHHHHHhC-CceechHHHH-HHHHHh--C-CCCCEEEECCC
Confidence            88999999864 666666665 488999999998   7777777542 2222211110 112221  1 56999986544


Q ss_pred             cccCChhHHH-HHHHHhhcCCCeEEEEEec
Q 037961          109 LHWFDLPQFY-KQVKWVLKKPSGVIAAWTY  137 (262)
Q Consensus       109 ~~~~d~~~~l-~~~~r~Lk~pgG~l~i~~~  137 (262)
                      .     ...+ +.+.++|+ +||+++++..
T Consensus       256 ~-----~~~~~~~~~~~l~-~~G~iv~~g~  279 (366)
T 2cdc_A          256 A-----DVNILGNVIPLLG-RNGVLGLFGF  279 (366)
T ss_dssp             C-----CTHHHHHHGGGEE-EEEEEEECSC
T ss_pred             C-----hHHHHHHHHHHHh-cCCEEEEEec
Confidence            2     2356 88999999 9999988654

>1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A*

Probab=93.74  E-value=0.091  Score=44.53  Aligned_cols=98  Identities=10%  Similarity=0.014  Sum_probs=63.4

Q ss_pred             CCCCC-eEEEEcC-c-ccHhHHHHHh-hCCeEEEEcCCHHHHHHHhcCCCceEEeCCCCchhhhhhccCCCCceeeEEEc
Q 037961           31 TPKRN-LAWDVGT-R-SGQAAASLAQ-IYQHVIATDTSPKQLKFAIKLPNIRYQLTPTMSITELEQNVATQSSVDLVTIA  106 (262)
Q Consensus        31 ~~~~~-~vlDvGc-G-~G~~~~~l~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~  106 (262)
                      ..++. .||-.|+ | .|..+.++++ .|++|++++.+++-++.+++...-..+..+.........  ...+.+|+|+-+
T Consensus       147 ~~~g~~~VlV~Ga~G~vG~~~~q~a~~~Ga~vi~~~~~~~~~~~~~~lGa~~v~~~~~~~~~~~~~--~~~~~~d~vid~  224 (330)
T 1tt7_A          147 LSPEKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYLKQLGASEVISREDVYDGTLKA--LSKQQWQGAVDP  224 (330)
T ss_dssp             CCGGGCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTHHHHHHHTCSEEEEHHHHCSSCCCS--SCCCCEEEEEES
T ss_pred             cCCCCceEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCcEEEECCCchHHHHHH--hhcCCccEEEEC
Confidence            34554 7999997 4 4888888776 489999999998888888764222222111000000111  123469999855


Q ss_pred             cccccCChhHHHHHHHHhhcCCCeEEEEEec
Q 037961          107 SALHWFDLPQFYKQVKWVLKKPSGVIAAWTY  137 (262)
Q Consensus       107 ~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~  137 (262)
                      ..      ...+..+.+.|+ +||+++++..
T Consensus       225 ~g------~~~~~~~~~~l~-~~G~iv~~G~  248 (330)
T 1tt7_A          225 VG------GKQLASLLSKIQ-YGGSVAVSGL  248 (330)
T ss_dssp             CC------THHHHHHHTTEE-EEEEEEECCC
T ss_pred             Cc------HHHHHHHHHhhc-CCCEEEEEec
Confidence            43      147889999999 9999998654

>3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A*

Probab=93.62  E-value=0.053  Score=45.77  Aligned_cols=42  Identities=12%  Similarity=0.099  Sum_probs=29.5

Q ss_pred             CCCCceeeEEEccccccCCh----hHHHHHHHHhhcCCCeEEEEEec
Q 037961           95 ATQSSVDLVTIASALHWFDL----PQFYKQVKWVLKKPSGVIAAWTY  137 (262)
Q Consensus        95 ~~~~~~D~V~~~~~~~~~d~----~~~l~~~~r~Lk~pgG~l~i~~~  137 (262)
                      +++..+|+|+-..--.--+|    +.+++.++++++ |||+|+-|+.
T Consensus       182 l~~~~~Da~flDgFsP~kNPeLWs~e~f~~l~~~~~-pgg~laTYta  227 (308)
T 3vyw_A          182 VENFKADAVFHDAFSPYKNPELWTLDFLSLIKERID-EKGYWVSYSS  227 (308)
T ss_dssp             CCSCCEEEEEECCSCTTTSGGGGSHHHHHHHHTTEE-EEEEEEESCC
T ss_pred             hcccceeEEEeCCCCcccCcccCCHHHHHHHHHHhC-CCcEEEEEeC
Confidence            34568999986432221233    458999999999 9999987554

>3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A*

Probab=93.62  E-value=0.2  Score=42.46  Aligned_cols=69  Identities=7%  Similarity=-0.055  Sum_probs=49.4

Q ss_pred             eEEEEcCcccHhHHHHHhhCCeEE-EEcCCHHHHHHHhcCCCceEEeCCCCchhhhhhccC-CCCceeeEEEccccc
Q 037961           36 LAWDVGTRSGQAAASLAQIYQHVI-ATDTSPKQLKFAIKLPNIRYQLTPTMSITELEQNVA-TQSSVDLVTIASALH  110 (262)
Q Consensus        36 ~vlDvGcG~G~~~~~l~~~~~~v~-~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~D~V~~~~~~~  110 (262)
                      .|+|+-||.|.++..+.+.|.+++ ++|+++..++.-+.+-.-....+|      +.++.. .-..+|+++....++
T Consensus         2 kvidLFsG~GG~~~G~~~aG~~~v~a~e~d~~a~~ty~~N~~~~~~~~D------I~~i~~~~~~~~D~l~ggpPCQ   72 (331)
T 3ubt_Y            2 NLISLFSGAGGLDLGFQKAGFRIICANEYDKSIWKTYESNHSAKLIKGD------ISKISSDEFPKCDGIIGGPPSQ   72 (331)
T ss_dssp             EEEEESCTTCHHHHHHHHTTCEEEEEEECCTTTHHHHHHHCCSEEEESC------GGGCCGGGSCCCSEEECCCCGG
T ss_pred             eEEEeCcCccHHHHHHHHCCCEEEEEEeCCHHHHHHHHHHCCCCcccCC------hhhCCHhhCCcccEEEecCCCC
Confidence            589999999999999988887654 999999999876654334566666      222110 113589999876654

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=93.44  E-value=0.24  Score=46.45  Aligned_cols=105  Identities=14%  Similarity=0.187  Sum_probs=62.0

Q ss_pred             CCCeEEEEcCcccHhHHHHHhh------------C--CeEEEEcC---CHHHHHHHhc-CC------------------C
Q 037961           33 KRNLAWDVGTRSGQAAASLAQI------------Y--QHVIATDT---SPKQLKFAIK-LP------------------N   76 (262)
Q Consensus        33 ~~~~vlDvGcG~G~~~~~l~~~------------~--~~v~~vD~---s~~~~~~a~~-~~------------------~   76 (262)
                      +.-+|+|+|-|+|.........            .  -+++++|.   +++.+..+-. .+                  +
T Consensus        66 ~~~~i~e~gfG~Gln~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~  145 (676)
T 3ps9_A           66 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG  145 (676)
T ss_dssp             SEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHHCCCCCSE
T ss_pred             CceEEEEeCCchHHHHHHHHHHHHHhhhhCcCCCCceEEEEEEeCCCCCHHHHHHHHHhChhhHHHHHHHHHhCcccCCC
Confidence            4458999999999877665432            1  25899999   8888774432 11                  1


Q ss_pred             c---eEEeCC---CCchhhhhhc-c-CC---CCceeeEEEccccccCC----hhHHHHHHHHhhcCCCeEEEEEecC
Q 037961           77 I---RYQLTP---TMSITELEQN-V-AT---QSSVDLVTIASALHWFD----LPQFYKQVKWVLKKPSGVIAAWTYT  138 (262)
Q Consensus        77 ~---~~~~~~---~~~~~~~~~~-~-~~---~~~~D~V~~~~~~~~~d----~~~~l~~~~r~Lk~pgG~l~i~~~~  138 (262)
                      +   .+..+.   .+-++|+.+. + +.   ...||+|+...--.-.+    ...+++.++++++ |||+++.++..
T Consensus       146 ~~~~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~d~~~~D~f~p~~np~~w~~~~~~~l~~~~~-~g~~~~t~~~~  221 (676)
T 3ps9_A          146 CHRLLLDAGRVTLDLWFGDINELTSQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLAR-PGGTLATFTSA  221 (676)
T ss_dssp             EEEEEEGGGTEEEEEEESCHHHHGGGBCGGGTTCEEEEEECCSCGGGCGGGSCHHHHHHHHHHEE-EEEEEEESCCC
T ss_pred             ceEEEecCCcEEEEEecCCHHHHHHhcccccCCcccEEEECCCCCcCChhhhhHHHHHHHHHHhC-CCCEEEeccCc
Confidence            1   111111   1222344332 1 11   46799998643221112    2448899999999 99999875543

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=93.36  E-value=0.91  Score=33.09  Aligned_cols=95  Identities=14%  Similarity=0.013  Sum_probs=59.1

Q ss_pred             CCeEEEEcCcc-cH-hHHHHHhhCCeEEEEcCCHHHHHHHhcCCCceEEeCCCCchhhhhhccCCCCceeeEEEcccccc
Q 037961           34 RNLAWDVGTRS-GQ-AAASLAQIYQHVIATDTSPKQLKFAIKLPNIRYQLTPTMSITELEQNVATQSSVDLVTIASALHW  111 (262)
Q Consensus        34 ~~~vlDvGcG~-G~-~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~~~  111 (262)
                      .++|+=+|||. |. ++..|.+.+.+|+++|.+++.++.+++ .++.++.+|.......+...  -..+|+|++...-. 
T Consensus         7 ~~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~~~~-~g~~~i~gd~~~~~~l~~a~--i~~ad~vi~~~~~~-   82 (140)
T 3fwz_A            7 CNHALLVGYGRVGSLLGEKLLASDIPLVVIETSRTRVDELRE-RGVRAVLGNAANEEIMQLAH--LECAKWLILTIPNG-   82 (140)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHH-TTCEEEESCTTSHHHHHHTT--GGGCSEEEECCSCH-
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH-cCCCEEECCCCCHHHHHhcC--cccCCEEEEECCCh-
Confidence            35688889875 43 334455568999999999999988876 46777877722212222222  24689888653311 


Q ss_pred             CChhHHHHHHHHhhcCCCeEEEE
Q 037961          112 FDLPQFYKQVKWVLKKPSGVIAA  134 (262)
Q Consensus       112 ~d~~~~l~~~~r~Lk~pgG~l~i  134 (262)
                       .....+....+.+. |+..++.
T Consensus        83 -~~n~~~~~~a~~~~-~~~~iia  103 (140)
T 3fwz_A           83 -YEAGEIVASARAKN-PDIEIIA  103 (140)
T ss_dssp             -HHHHHHHHHHHHHC-SSSEEEE
T ss_pred             -HHHHHHHHHHHHHC-CCCeEEE
Confidence             01113444566777 7877665

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=93.34  E-value=0.047  Score=45.84  Aligned_cols=55  Identities=18%  Similarity=0.247  Sum_probs=38.1

Q ss_pred             CCceEEeCCCCchhhhhh-c-cCCCCceeeEEEcccccc--------------------C-ChhHHHHHHHHhhcCCCeE
Q 037961           75 PNIRYQLTPTMSITELEQ-N-VATQSSVDLVTIASALHW--------------------F-DLPQFYKQVKWVLKKPSGV  131 (262)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~-~-~~~~~~~D~V~~~~~~~~--------------------~-d~~~~l~~~~r~Lk~pgG~  131 (262)
                      ..+.++++|      ..+ + .+++++||+|+++....-                    + ....+++++.++|| |||.
T Consensus        20 ~~~~i~~gD------~~~~l~~l~~~s~DlIvtdPPY~~~~~y~~~~~~~~~~~~~~~~l~~l~~~~~~~~rvLk-~~G~   92 (297)
T 2zig_A           20 GVHRLHVGD------AREVLASFPEASVHLVVTSPPYWTLKRYEDTPGQLGHIEDYEAFLDELDRVWREVFRLLV-PGGR   92 (297)
T ss_dssp             -CEEEEESC------HHHHHTTSCTTCEEEEEECCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHEE-EEEE
T ss_pred             cCCEEEECc------HHHHHhhCCCCceeEEEECCCCCCccccCCChhhhcccccHHHHHHHHHHHHHHHHHHcC-CCcE
Confidence            345677776      222 2 146789999999877642                    2 23457889999999 9999


Q ss_pred             EEEEe
Q 037961          132 IAAWT  136 (262)
Q Consensus       132 l~i~~  136 (262)
                      ++++.
T Consensus        93 l~i~~   97 (297)
T 2zig_A           93 LVIVV   97 (297)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            98854

>2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A*

Probab=92.76  E-value=0.83  Score=38.53  Aligned_cols=100  Identities=14%  Similarity=0.037  Sum_probs=64.7

Q ss_pred             CeEEEEcCcccHhHHHHHh-hCCeEEEEcCCHHHHHHHhcC---------CCceEEeCC-CCchh-hhhhccCCCCceee
Q 037961           35 NLAWDVGTRSGQAAASLAQ-IYQHVIATDTSPKQLKFAIKL---------PNIRYQLTP-TMSIT-ELEQNVATQSSVDL  102 (262)
Q Consensus        35 ~~vlDvGcG~G~~~~~l~~-~~~~v~~vD~s~~~~~~a~~~---------~~~~~~~~~-~~~~~-~~~~~~~~~~~~D~  102 (262)
                      ..|+++|||-=.....+.. .+..++-+| .|..++..++.         .+..++..| .-... .+..-++....--+
T Consensus       104 ~QvV~LGaGlDTra~Rl~~~~~~~v~evD-~P~vi~~k~~lL~~~~~~~~~~~~~v~~Dl~d~~~~~l~~~g~d~~~Pt~  182 (310)
T 2uyo_A          104 RQFVILASGLDSRAYRLDWPTGTTVYEID-QPKVLAYKSTTLAEHGVTPTADRREVPIDLRQDWPPALRSAGFDPSARTA  182 (310)
T ss_dssp             CEEEEETCTTCCHHHHSCCCTTCEEEEEE-CHHHHHHHHHHHHHTTCCCSSEEEEEECCTTSCHHHHHHHTTCCTTSCEE
T ss_pred             CeEEEeCCCCCchhhhccCCCCcEEEEcC-CHHHHHHHHHHHHhcCCCCCCCeEEEecchHhhHHHHHHhccCCCCCCEE
Confidence            4699999998877777663 357899999 57877765531         345556565 11111 11122233445567


Q ss_pred             EEEccccccCChhH---HHHHHHHhhcCCCeEEEEEe
Q 037961          103 VTIASALHWFDLPQ---FYKQVKWVLKKPSGVIAAWT  136 (262)
Q Consensus       103 V~~~~~~~~~d~~~---~l~~~~r~Lk~pgG~l~i~~  136 (262)
                      +++-..+|+++++.   +++.+...+. ||+.|++-.
T Consensus       183 ~i~Egvl~Yl~~~~~~~ll~~l~~~~~-~gs~l~~d~  218 (310)
T 2uyo_A          183 WLAEGLLMYLPATAQDGLFTEIGGLSA-VGSRIAVET  218 (310)
T ss_dssp             EEECSCGGGSCHHHHHHHHHHHHHTCC-TTCEEEEEC
T ss_pred             EEEechHhhCCHHHHHHHHHHHHHhCC-CCeEEEEEe
Confidence            78888999995544   6777777777 888888733

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=92.00  E-value=0.43  Score=44.79  Aligned_cols=104  Identities=13%  Similarity=0.115  Sum_probs=61.3

Q ss_pred             CCCeEEEEcCcccHhHHHHHhhC--------------CeEEEEcC---CHHHHHHHhcC-------------------CC
Q 037961           33 KRNLAWDVGTRSGQAAASLAQIY--------------QHVIATDT---SPKQLKFAIKL-------------------PN   76 (262)
Q Consensus        33 ~~~~vlDvGcG~G~~~~~l~~~~--------------~~v~~vD~---s~~~~~~a~~~-------------------~~   76 (262)
                      +.-+|+|+|.|+|.....+.+..              -+++.+|.   +.+.+..+-+.                   ++
T Consensus        58 ~~~~i~e~gfG~G~n~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~  137 (689)
T 3pvc_A           58 QSCIFAETGFGTGLNFLTLWRDFALFRQQSPNATLRRLHYISFEKYPLHVADLASAHARWPELASFAEQLRAQWPLPLAG  137 (689)
T ss_dssp             SEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCCCSE
T ss_pred             CceEEEEecCchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEeeCCCCCHHHHHHHHHhCcchhHHHHHHHHhCcccCCC
Confidence            44689999999998877664421              36899998   66666543210                   11


Q ss_pred             c---eEEeCC---CCchhhhhh-cc-CC---CCceeeEEEccccccCC----hhHHHHHHHHhhcCCCeEEEEEec
Q 037961           77 I---RYQLTP---TMSITELEQ-NV-AT---QSSVDLVTIASALHWFD----LPQFYKQVKWVLKKPSGVIAAWTY  137 (262)
Q Consensus        77 ~---~~~~~~---~~~~~~~~~-~~-~~---~~~~D~V~~~~~~~~~d----~~~~l~~~~r~Lk~pgG~l~i~~~  137 (262)
                      +   .+..+.   .+-++|+.+ ++ +.   ++.+|.++....-.-.+    ...++..+.++++ |||++..+..
T Consensus       138 ~~r~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~da~flD~f~p~~np~~w~~~~~~~l~~~~~-~g~~~~t~~~  212 (689)
T 3pvc_A          138 CHRILLADGAITLDLWFGDVNTLLPTLDDSLNNQVDAWFLDGFAPAKNPDMWNEQLFNAMARMTR-PGGTFSTFTA  212 (689)
T ss_dssp             EEEEEETTTTEEEEEEESCHHHHGGGCCGGGTTCEEEEEECSSCC--CCTTCSHHHHHHHHHHEE-EEEEEEESCC
T ss_pred             ceEEEecCCcEEEEEEccCHHHHHhhcccccCCceeEEEECCCCCCCChhhhhHHHHHHHHHHhC-CCCEEEeccC
Confidence            1   111111   122344543 22 12   46899998643211112    2558999999999 9999887544

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=91.92  E-value=2.2  Score=30.41  Aligned_cols=94  Identities=14%  Similarity=0.024  Sum_probs=53.5

Q ss_pred             CeEEEEcCcc-cH-hHHHHHhhCCeEEEEcCCHHHHHHHhcCCCceEEeCCCCchhhhhhccCCCCceeeEEEccccccC
Q 037961           35 NLAWDVGTRS-GQ-AAASLAQIYQHVIATDTSPKQLKFAIKLPNIRYQLTPTMSITELEQNVATQSSVDLVTIASALHWF  112 (262)
Q Consensus        35 ~~vlDvGcG~-G~-~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~~~~  112 (262)
                      ..|+=+|+|. |. ++..|.+.+.+|+++|.+++.++..++..++.+..++..........  .-..+|+|+....-.  
T Consensus         5 m~i~IiG~G~iG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~--~~~~~d~vi~~~~~~--   80 (140)
T 1lss_A            5 MYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDALVINGDCTKIKTLEDA--GIEDADMYIAVTGKE--   80 (140)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCSSEEEESCTTSHHHHHHT--TTTTCSEEEECCSCH--
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHhcCcEEEEcCCCCHHHHHHc--CcccCCEEEEeeCCc--
Confidence            5678888764 32 23344456889999999999887665433566666551111112111  124589998764322  


Q ss_pred             ChhHHHHHHHHhhcCCCeEEEE
Q 037961          113 DLPQFYKQVKWVLKKPSGVIAA  134 (262)
Q Consensus       113 d~~~~l~~~~r~Lk~pgG~l~i  134 (262)
                      .....+.++.+.+. ++ .+++
T Consensus        81 ~~~~~~~~~~~~~~-~~-~ii~  100 (140)
T 1lss_A           81 EVNLMSSLLAKSYG-IN-KTIA  100 (140)
T ss_dssp             HHHHHHHHHHHHTT-CC-CEEE
T ss_pred             hHHHHHHHHHHHcC-CC-EEEE
Confidence            12234555666677 65 4444

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=91.89  E-value=1.9  Score=36.30  Aligned_cols=89  Identities=20%  Similarity=0.261  Sum_probs=58.4

Q ss_pred             CeEEEEcCcc--cHhHHHHHhhCC--eEEEEcCCHHHHHHHhcCCCceEEeCCCCchhhhhhccCCCCceeeEEEccccc
Q 037961           35 NLAWDVGTRS--GQAAASLAQIYQ--HVIATDTSPKQLKFAIKLPNIRYQLTPTMSITELEQNVATQSSVDLVTIASALH  110 (262)
Q Consensus        35 ~~vlDvGcG~--G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~~  110 (262)
                      .+|.=||+|.  +.++..|.+.|.  +|++.|.+++.++.+.+...+.....+      .++.  .-...|+|+.+-...
T Consensus        34 ~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~~G~~~~~~~~------~~~~--~~~~aDvVilavp~~  105 (314)
T 3ggo_A           34 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTS------IAKV--EDFSPDFVMLSSPVR  105 (314)
T ss_dssp             SEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESC------TTGG--GGGCCSEEEECSCGG
T ss_pred             CEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHCCCcchhcCC------HHHH--hhccCCEEEEeCCHH
Confidence            5788899986  455667777787  999999999988888765322111111      1110  012479998765443


Q ss_pred             cCChhHHHHHHHHhhcCCCeEEEE
Q 037961          111 WFDLPQFYKQVKWVLKKPSGVIAA  134 (262)
Q Consensus       111 ~~d~~~~l~~~~r~Lk~pgG~l~i  134 (262)
                        ....+++++...|+ ||.+++-
T Consensus       106 --~~~~vl~~l~~~l~-~~~iv~d  126 (314)
T 3ggo_A          106 --TFREIAKKLSYILS-EDATVTD  126 (314)
T ss_dssp             --GHHHHHHHHHHHSC-TTCEEEE
T ss_pred             --HHHHHHHHHhhccC-CCcEEEE
Confidence              34567888888898 7776553

>3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A

Probab=91.71  E-value=0.59  Score=41.98  Aligned_cols=78  Identities=10%  Similarity=0.021  Sum_probs=51.8

Q ss_pred             CeEEEEcCcccHhHHHHHhhCCe-EEEEcCCHHHHHHHhcC----CCceEEeCCC--Cchhhh---------hhccCCCC
Q 037961           35 NLAWDVGTRSGQAAASLAQIYQH-VIATDTSPKQLKFAIKL----PNIRYQLTPT--MSITEL---------EQNVATQS   98 (262)
Q Consensus        35 ~~vlDvGcG~G~~~~~l~~~~~~-v~~vD~s~~~~~~a~~~----~~~~~~~~~~--~~~~~~---------~~~~~~~~   98 (262)
                      -+++|+-||.|.++..+...|.+ |.++|+++..++.-+.+    +...+..+|.  +...+.         +.+.-..+
T Consensus        89 ~~viDLFaG~GGlslG~~~aG~~~v~avE~d~~A~~ty~~N~~~~p~~~~~~~DI~~i~~~~~~~~~~~~~~~~i~~~~~  168 (482)
T 3me5_A           89 FRFIDLFAGIGGIRRGFESIGGQCVFTSEWNKHAVRTYKANHYCDPATHHFNEDIRDITLSHQEGVSDEAAAEHIRQHIP  168 (482)
T ss_dssp             EEEEEESCTTSHHHHHHHTTTEEEEEEECCCHHHHHHHHHHSCCCTTTCEEESCTHHHHCTTCTTSCHHHHHHHHHHHSC
T ss_pred             ceEEEecCCccHHHHHHHHCCCEEEEEEeCCHHHHHHHHHhcccCCCcceeccchhhhhhccccccchhhHHhhhhhcCC
Confidence            57899999999999999888776 67999999988866542    4556666661  110000         00000123


Q ss_pred             ceeeEEEccccccC
Q 037961           99 SVDLVTIASALHWF  112 (262)
Q Consensus        99 ~~D~V~~~~~~~~~  112 (262)
                      .+|+|+....+.-+
T Consensus       169 ~~Dvl~gGpPCQ~F  182 (482)
T 3me5_A          169 EHDVLLAGFPCQPF  182 (482)
T ss_dssp             CCSEEEEECCCCCC
T ss_pred             CCCEEEecCCCcch
Confidence            58999987776644

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=91.38  E-value=1.2  Score=32.20  Aligned_cols=72  Identities=15%  Similarity=0.135  Sum_probs=46.7

Q ss_pred             CCeEEEEcCcc-cH-hHHHHHhhCCeEEEEcCCHHHHHHHhcCCCceEEeCCCCchhhhhhccCCCCceeeEEEccc
Q 037961           34 RNLAWDVGTRS-GQ-AAASLAQIYQHVIATDTSPKQLKFAIKLPNIRYQLTPTMSITELEQNVATQSSVDLVTIASA  108 (262)
Q Consensus        34 ~~~vlDvGcG~-G~-~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~  108 (262)
                      ..+++=+|||. |. ++..|.+.|.+|+++|.+++.++.+++. ++.+..+|...........  -..+|+|++...
T Consensus         6 ~~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~~~~~~~~~~~-~~~~~~gd~~~~~~l~~~~--~~~~d~vi~~~~   79 (141)
T 3llv_A            6 RYEYIVIGSEAAGVGLVRELTAAGKKVLAVDKSKEKIELLEDE-GFDAVIADPTDESFYRSLD--LEGVSAVLITGS   79 (141)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHT-TCEEEECCTTCHHHHHHSC--CTTCSEEEECCS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHC-CCcEEECCCCCHHHHHhCC--cccCCEEEEecC
Confidence            35688899865 33 3334455689999999999998887754 5677777722222233332  346899887544

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=90.94  E-value=3  Score=31.59  Aligned_cols=96  Identities=14%  Similarity=-0.042  Sum_probs=56.6

Q ss_pred             CCeEEEEcCcc-cHh-HHHHHhh-CCeEEEEcCCHHHHHHHhcCCCceEEeCCCCchhhhhhc-cCCCCceeeEEEcccc
Q 037961           34 RNLAWDVGTRS-GQA-AASLAQI-YQHVIATDTSPKQLKFAIKLPNIRYQLTPTMSITELEQN-VATQSSVDLVTIASAL  109 (262)
Q Consensus        34 ~~~vlDvGcG~-G~~-~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~D~V~~~~~~  109 (262)
                      ++.|+=+|||. |.. +..|... +.+|+++|.+++.++.+++. ++....++..+....... .  -..+|+|+....-
T Consensus        39 ~~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~~~~~~~~~~-g~~~~~gd~~~~~~l~~~~~--~~~ad~vi~~~~~  115 (183)
T 3c85_A           39 HAQVLILGMGRIGTGAYDELRARYGKISLGIEIREEAAQQHRSE-GRNVISGDATDPDFWERILD--TGHVKLVLLAMPH  115 (183)
T ss_dssp             TCSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCHHHHHHHHHT-TCCEEECCTTCHHHHHTBCS--CCCCCEEEECCSS
T ss_pred             CCcEEEECCCHHHHHHHHHHHhccCCeEEEEECCHHHHHHHHHC-CCCEEEcCCCCHHHHHhccC--CCCCCEEEEeCCC
Confidence            45788899875 433 3445567 89999999999988887754 566666652111112222 2  2458999874331


Q ss_pred             ccCChhHHHHHHHHhhcCCCeEEEEE
Q 037961          110 HWFDLPQFYKQVKWVLKKPSGVIAAW  135 (262)
Q Consensus       110 ~~~d~~~~l~~~~r~Lk~pgG~l~i~  135 (262)
                        ......+-...+-+. |++.++.-
T Consensus       116 --~~~~~~~~~~~~~~~-~~~~ii~~  138 (183)
T 3c85_A          116 --HQGNQTALEQLQRRN-YKGQIAAI  138 (183)
T ss_dssp             --HHHHHHHHHHHHHTT-CCSEEEEE
T ss_pred             --hHHHHHHHHHHHHHC-CCCEEEEE
Confidence              111123334555566 67676653

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=90.59  E-value=0.2  Score=42.60  Aligned_cols=42  Identities=24%  Similarity=0.200  Sum_probs=33.4

Q ss_pred             CCCCceeeEEEcccccc--------------C-ChhHHHHHHHHhhcCCCeEEEEEec
Q 037961           95 ATQSSVDLVTIASALHW--------------F-DLPQFYKQVKWVLKKPSGVIAAWTY  137 (262)
Q Consensus        95 ~~~~~~D~V~~~~~~~~--------------~-d~~~~l~~~~r~Lk~pgG~l~i~~~  137 (262)
                      +++++||+|++.....-              + ....+++++.++|+ |||.++++..
T Consensus        29 l~~~svDlI~tDPPY~~~~~~~y~~~~~~~~~~~l~~~l~~~~rvLk-~~G~i~i~~~   85 (323)
T 1boo_A           29 FPEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLK-PDGSFVVDFG   85 (323)
T ss_dssp             SCSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEE-EEEEEEEEEC
T ss_pred             CCCCCeeEEEECCCCCCCcccccCCcCHHHHHHHHHHHHHHHHHHCc-CCcEEEEEEC
Confidence            46789999999866532              2 35678999999999 9999998554

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=90.19  E-value=2.2  Score=31.45  Aligned_cols=75  Identities=12%  Similarity=0.010  Sum_probs=44.7

Q ss_pred             CCCCeEEEEcCcc-cHh-HHHHHhhCCeEEEEcCCHHHHHHHhcCCCceEEeCCCCchhhhhhccCCCCceeeEEEccc
Q 037961           32 PKRNLAWDVGTRS-GQA-AASLAQIYQHVIATDTSPKQLKFAIKLPNIRYQLTPTMSITELEQNVATQSSVDLVTIASA  108 (262)
Q Consensus        32 ~~~~~vlDvGcG~-G~~-~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~  108 (262)
                      .+...|+=+|||. |.. +..|...+.+|+++|.++..++.++...+.....++..........  .-..+|+|+....
T Consensus        17 ~~~~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~g~~~~~~d~~~~~~l~~~--~~~~ad~Vi~~~~   93 (155)
T 2g1u_A           17 QKSKYIVIFGCGRLGSLIANLASSSGHSVVVVDKNEYAFHRLNSEFSGFTVVGDAAEFETLKEC--GMEKADMVFAFTN   93 (155)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGGGGSCTTCCSEEEESCTTSHHHHHTT--TGGGCSEEEECSS
T ss_pred             cCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHhcCCCcEEEecCCCHHHHHHc--CcccCCEEEEEeC
Confidence            3567889999875 433 3344456889999999988776655223455665551111112211  1235899987643

>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A

Probab=89.94  E-value=0.88  Score=38.89  Aligned_cols=99  Identities=12%  Similarity=0.059  Sum_probs=56.8

Q ss_pred             CCCCCeEEEEcC-c-ccHhHHHHHhh-CCeEEE-EcCCH---HHHHHHhcCCCceEEeCCCCchhhhhhccCCCCceeeE
Q 037961           31 TPKRNLAWDVGT-R-SGQAAASLAQI-YQHVIA-TDTSP---KQLKFAIKLPNIRYQLTPTMSITELEQNVATQSSVDLV  103 (262)
Q Consensus        31 ~~~~~~vlDvGc-G-~G~~~~~l~~~-~~~v~~-vD~s~---~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~V  103 (262)
                      ..++.+||=.|+ | .|.++.++++. |+++++ ++.++   +.++.+++...-.++..+.....++....-..+.+|+|
T Consensus       165 ~~~g~~VlV~Ga~G~vG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~~~Dvv  244 (357)
T 1zsy_A          165 LQPGDSVIQNASNSGVGQAVIQIAAALGLRTINVVRDRPDIQKLSDRLKSLGAEHVITEEELRRPEMKNFFKDMPQPRLA  244 (357)
T ss_dssp             CCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEECCCSCHHHHHHHHHHTTCSEEEEHHHHHSGGGGGTTSSSCCCSEE
T ss_pred             cCCCCEEEEeCCcCHHHHHHHHHHHHcCCEEEEEecCccchHHHHHHHHhcCCcEEEecCcchHHHHHHHHhCCCCceEE
Confidence            467889999997 4 58888888874 887665 44543   23556665532222221100001122211111248999


Q ss_pred             EEccccccCChhHHHHHHHHhhcCCCeEEEEEe
Q 037961          104 TIASALHWFDLPQFYKQVKWVLKKPSGVIAAWT  136 (262)
Q Consensus       104 ~~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~  136 (262)
                      +-...      .....++.++|+ +||+++++.
T Consensus       245 id~~g------~~~~~~~~~~l~-~~G~iv~~G  270 (357)
T 1zsy_A          245 LNCVG------GKSSTELLRQLA-RGGTMVTYG  270 (357)
T ss_dssp             EESSC------HHHHHHHHTTSC-TTCEEEECC
T ss_pred             EECCC------cHHHHHHHHhhC-CCCEEEEEe
Confidence            85432      122356789999 999998864

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=89.30  E-value=1.8  Score=39.02  Aligned_cols=92  Identities=13%  Similarity=0.041  Sum_probs=58.7

Q ss_pred             CCCCCeEEEEcCcc-cHhHHHHHh-hCCeEEEEcCCHHHHHHHhcCCCceEEeCCCCchhhhhhccCCCCceeeEEEccc
Q 037961           31 TPKRNLAWDVGTRS-GQAAASLAQ-IYQHVIATDTSPKQLKFAIKLPNIRYQLTPTMSITELEQNVATQSSVDLVTIASA  108 (262)
Q Consensus        31 ~~~~~~vlDvGcG~-G~~~~~l~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~  108 (262)
                      ..++.+|+=+|+|. |......++ .|.+|+++|+++.-++.+++. ++.+.  +   ..++  +    ...|+|+....
T Consensus       271 ~l~GktV~IiG~G~IG~~~A~~lka~Ga~Viv~d~~~~~~~~A~~~-Ga~~~--~---l~e~--l----~~aDvVi~atg  338 (494)
T 3ce6_A          271 LIGGKKVLICGYGDVGKGCAEAMKGQGARVSVTEIDPINALQAMME-GFDVV--T---VEEA--I----GDADIVVTATG  338 (494)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHT-TCEEC--C---HHHH--G----GGCSEEEECSS
T ss_pred             CCCcCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc-CCEEe--c---HHHH--H----hCCCEEEECCC
Confidence            45778999999975 554444443 588999999999888777654 33321  1   1111  1    35799987543


Q ss_pred             cccCChhHHHHHHHHhhcCCCeEEEEEecCC
Q 037961          109 LHWFDLPQFYKQVKWVLKKPSGVIAAWTYTM  139 (262)
Q Consensus       109 ~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~~~  139 (262)
                      -..+    +-.+..+.|| +||+++......
T Consensus       339 t~~~----i~~~~l~~mk-~ggilvnvG~~~  364 (494)
T 3ce6_A          339 NKDI----IMLEHIKAMK-DHAILGNIGHFD  364 (494)
T ss_dssp             SSCS----BCHHHHHHSC-TTCEEEECSSSG
T ss_pred             CHHH----HHHHHHHhcC-CCcEEEEeCCCC
Confidence            2221    1135677899 999998755443

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=89.10  E-value=1.3  Score=38.15  Aligned_cols=90  Identities=10%  Similarity=0.054  Sum_probs=58.0

Q ss_pred             CCeEEEEcCcc-c-HhHHHHHhhCCeEEEEcCCHHHHHHHhcCCCceEEeCCCCchhhhhhccCCCCceeeEEEcccccc
Q 037961           34 RNLAWDVGTRS-G-QAAASLAQIYQHVIATDTSPKQLKFAIKLPNIRYQLTPTMSITELEQNVATQSSVDLVTIASALHW  111 (262)
Q Consensus        34 ~~~vlDvGcG~-G-~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~~~  111 (262)
                      ..+|.=||+|. | ..+..|++.|.+|++.|.+++-++.+.+. ++....       +.++..-.....|+|+..-.-. 
T Consensus        22 ~mkIgiIGlG~mG~~~A~~L~~~G~~V~v~dr~~~~~~~l~~~-g~~~~~-------s~~e~~~~a~~~DvVi~~vp~~-   92 (358)
T 4e21_A           22 SMQIGMIGLGRMGADMVRRLRKGGHECVVYDLNVNAVQALERE-GIAGAR-------SIEEFCAKLVKPRVVWLMVPAA-   92 (358)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHTT-TCBCCS-------SHHHHHHHSCSSCEEEECSCGG-
T ss_pred             CCEEEEECchHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHC-CCEEeC-------CHHHHHhcCCCCCEEEEeCCHH-
Confidence            35688899885 3 34556677899999999999988877654 222211       1111110112459998765544 


Q ss_pred             CChhHHHHHHHHhhcCCCeEEEE
Q 037961          112 FDLPQFYKQVKWVLKKPSGVIAA  134 (262)
Q Consensus       112 ~d~~~~l~~~~r~Lk~pgG~l~i  134 (262)
                       ..+.++.++...|+ +|.+++-
T Consensus        93 -~v~~vl~~l~~~l~-~g~iiId  113 (358)
T 4e21_A           93 -VVDSMLQRMTPLLA-ANDIVID  113 (358)
T ss_dssp             -GHHHHHHHHGGGCC-TTCEEEE
T ss_pred             -HHHHHHHHHHhhCC-CCCEEEe
Confidence             56667888888888 7766554

>4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase; 2.10A {Homo sapiens}

Probab=88.91  E-value=0.82  Score=38.94  Aligned_cols=96  Identities=17%  Similarity=0.029  Sum_probs=56.7

Q ss_pred             CCCCCeEEEEcC-c-ccHhHHHHHhh--CCeEEEEcCCHHHHHHHhcCCCceEEeCCCCchhhhhhccCCCCceeeEEEc
Q 037961           31 TPKRNLAWDVGT-R-SGQAAASLAQI--YQHVIATDTSPKQLKFAIKLPNIRYQLTPTMSITELEQNVATQSSVDLVTIA  106 (262)
Q Consensus        31 ~~~~~~vlDvGc-G-~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~  106 (262)
                      ..++.+||=.|+ | .|.++.++++.  +.+|++++ ++.-.+.++ ...-.++..+.-....+...  ..+.+|+|+-.
T Consensus       140 ~~~g~~VlV~Ga~G~vG~~a~qla~~~g~~~V~~~~-~~~~~~~~~-~ga~~~~~~~~~~~~~~~~~--~~~g~Dvv~d~  215 (349)
T 4a27_A          140 LREGMSVLVHSAGGGVGQAVAQLCSTVPNVTVFGTA-STFKHEAIK-DSVTHLFDRNADYVQEVKRI--SAEGVDIVLDC  215 (349)
T ss_dssp             CCTTCEEEESSTTSHHHHHHHHHHTTSTTCEEEEEE-CGGGHHHHG-GGSSEEEETTSCHHHHHHHH--CTTCEEEEEEE
T ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHHcCCcEEEEeC-CHHHHHHHH-cCCcEEEcCCccHHHHHHHh--cCCCceEEEEC
Confidence            357889999998 3 48888888875  46899988 666666666 32222222221001222222  24579999954


Q ss_pred             cccccCChhHHHHHHHHhhcCCCeEEEEEec
Q 037961          107 SALHWFDLPQFYKQVKWVLKKPSGVIAAWTY  137 (262)
Q Consensus       107 ~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~  137 (262)
                      ..-      ..+..+.++|+ +||+++++..
T Consensus       216 ~g~------~~~~~~~~~l~-~~G~~v~~G~  239 (349)
T 4a27_A          216 LCG------DNTGKGLSLLK-PLGTYILYGS  239 (349)
T ss_dssp             CC-------------CTTEE-EEEEEEEEC-
T ss_pred             CCc------hhHHHHHHHhh-cCCEEEEECC
Confidence            331      23477889999 9999998664

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=88.81  E-value=0.24  Score=43.09  Aligned_cols=97  Identities=21%  Similarity=0.168  Sum_probs=57.0

Q ss_pred             CCCeEEEEcCcc-cHhHHHHHh-hCCeEEEEcCCHHHHHHHhc-C-CCceEEeCCCCchhhhhhccCCCCceeeEEEccc
Q 037961           33 KRNLAWDVGTRS-GQAAASLAQ-IYQHVIATDTSPKQLKFAIK-L-PNIRYQLTPTMSITELEQNVATQSSVDLVTIASA  108 (262)
Q Consensus        33 ~~~~vlDvGcG~-G~~~~~l~~-~~~~v~~vD~s~~~~~~a~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~  108 (262)
                      ++.+|+=+|+|. |......+. .|++|+++|.++.-++.+++ . ..+.....+   ..++...-   ..+|+|+....
T Consensus       167 ~g~~V~ViG~G~iG~~~a~~a~~~Ga~V~~~d~~~~~l~~~~~~~g~~~~~~~~~---~~~l~~~l---~~aDvVi~~~~  240 (377)
T 2vhw_A          167 EPADVVVIGAGTAGYNAARIANGMGATVTVLDINIDKLRQLDAEFCGRIHTRYSS---AYELEGAV---KRADLVIGAVL  240 (377)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTTSSEEEECC---HHHHHHHH---HHCSEEEECCC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhcCCeeEeccCC---HHHHHHHH---cCCCEEEECCC
Confidence            467899999975 544444443 58899999999998877765 2 122121111   11222211   25799987433


Q ss_pred             cccCCh-hHHHHHHHHhhcCCCeEEEEEe
Q 037961          109 LHWFDL-PQFYKQVKWVLKKPSGVIAAWT  136 (262)
Q Consensus       109 ~~~~d~-~~~l~~~~r~Lk~pgG~l~i~~  136 (262)
                      ....+. .-+.+++.+.|| |||+++-..
T Consensus       241 ~p~~~t~~li~~~~l~~mk-~g~~iV~va  268 (377)
T 2vhw_A          241 VPGAKAPKLVSNSLVAHMK-PGAVLVDIA  268 (377)
T ss_dssp             CTTSCCCCCBCHHHHTTSC-TTCEEEEGG
T ss_pred             cCCCCCcceecHHHHhcCC-CCcEEEEEe
Confidence            222111 113567778899 999987644

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=88.74  E-value=4.4  Score=35.52  Aligned_cols=95  Identities=15%  Similarity=0.044  Sum_probs=61.1

Q ss_pred             CCeEEEEcCcc-cHh-HHHHHhhCCeEEEEcCCHHHHHHHhcCCCceEEeCCCCchhhhhhccCCCCceeeEEEcccccc
Q 037961           34 RNLAWDVGTRS-GQA-AASLAQIYQHVIATDTSPKQLKFAIKLPNIRYQLTPTMSITELEQNVATQSSVDLVTIASALHW  111 (262)
Q Consensus        34 ~~~vlDvGcG~-G~~-~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~~~  111 (262)
                      .++|+=+|+|. |.. +..|...+.+|+++|.+++.++.+++. ++.++.+|......++..++  ...|+|++...-  
T Consensus         4 ~~~viIiG~Gr~G~~va~~L~~~g~~vvvId~d~~~v~~~~~~-g~~vi~GDat~~~~L~~agi--~~A~~viv~~~~--   78 (413)
T 3l9w_A            4 GMRVIIAGFGRFGQITGRLLLSSGVKMVVLDHDPDHIETLRKF-GMKVFYGDATRMDLLESAGA--AKAEVLINAIDD--   78 (413)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEECCHHHHHHHHHT-TCCCEESCTTCHHHHHHTTT--TTCSEEEECCSS--
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHhC-CCeEEEcCCCCHHHHHhcCC--CccCEEEECCCC--
Confidence            45678888874 433 334445689999999999999988864 56778787322223333433  457888875431  


Q ss_pred             CChhHHHHHHHHhhcCCCeEEEE
Q 037961          112 FDLPQFYKQVKWVLKKPSGVIAA  134 (262)
Q Consensus       112 ~d~~~~l~~~~r~Lk~pgG~l~i  134 (262)
                      -.....+....+-+. |+..+++
T Consensus        79 ~~~n~~i~~~ar~~~-p~~~Iia  100 (413)
T 3l9w_A           79 PQTNLQLTEMVKEHF-PHLQIIA  100 (413)
T ss_dssp             HHHHHHHHHHHHHHC-TTCEEEE
T ss_pred             hHHHHHHHHHHHHhC-CCCeEEE
Confidence            112225566777788 8877766

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=88.64  E-value=0.85  Score=39.96  Aligned_cols=98  Identities=15%  Similarity=0.160  Sum_probs=59.0

Q ss_pred             CCCeEEEEcCcc-cHhHHHHHh-hCCeEEEEcCCHHHHHHHhcCCCceEEeCC-----------CCc-----------hh
Q 037961           33 KRNLAWDVGTRS-GQAAASLAQ-IYQHVIATDTSPKQLKFAIKLPNIRYQLTP-----------TMS-----------IT   88 (262)
Q Consensus        33 ~~~~vlDvGcG~-G~~~~~l~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~-----------~~~-----------~~   88 (262)
                      ++.+|+=+|+|. |.....++. .|++|+++|.++.-++.+++. +..+...+           .+.           ..
T Consensus       189 ~~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~~~-G~~~~~~~~~~~~d~~~~~~ya~e~s~~~~~~~~~  267 (405)
T 4dio_A          189 PAAKIFVMGAGVAGLQAIATARRLGAVVSATDVRPAAKEQVASL-GAKFIAVEDEEFKAAETAGGYAKEMSGEYQVKQAA  267 (405)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSTTHHHHHHHT-TCEECCCCC-----------------CHHHHHHHH
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHc-CCceeecccccccccccccchhhhcchhhhhhhHh
Confidence            567899999986 655555544 589999999999988888764 33332210           000           00


Q ss_pred             hhhhccCCCCceeeEEEccccccC-ChhHHHHHHHHhhcCCCeEEEEE
Q 037961           89 ELEQNVATQSSVDLVTIASALHWF-DLPQFYKQVKWVLKKPSGVIAAW  135 (262)
Q Consensus        89 ~~~~~~~~~~~~D~V~~~~~~~~~-d~~~~l~~~~r~Lk~pgG~l~i~  135 (262)
                      ++.+.   -...|+|+..-.+.-- .+.-+-+++.+.+| ||.+++=.
T Consensus       268 ~l~e~---l~~aDVVI~tvlipg~~ap~Lvt~emv~~Mk-~GsVIVDv  311 (405)
T 4dio_A          268 LVAEH---IAKQDIVITTALIPGRPAPRLVTREMLDSMK-PGSVVVDL  311 (405)
T ss_dssp             HHHHH---HHTCSEEEECCCCSSSCCCCCBCHHHHTTSC-TTCEEEET
T ss_pred             HHHHH---hcCCCEEEECCcCCCCCCCEEecHHHHhcCC-CCCEEEEE
Confidence            11111   1357999864322211 22224578889999 89988753

>3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE NDP; 1.70A {Ralstonia eutropha}

Probab=88.58  E-value=0.59  Score=40.43  Aligned_cols=74  Identities=8%  Similarity=0.006  Sum_probs=44.6

Q ss_pred             CCCCeEEEEc--Cc-ccHhHHHHHh-hCCeEEEEcCCHHHHHHHhcCCCceEEeCCCCch-hhhhhccCCCCceeeEEEc
Q 037961           32 PKRNLAWDVG--TR-SGQAAASLAQ-IYQHVIATDTSPKQLKFAIKLPNIRYQLTPTMSI-TELEQNVATQSSVDLVTIA  106 (262)
Q Consensus        32 ~~~~~vlDvG--cG-~G~~~~~l~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~D~V~~~  106 (262)
                      .++.+||=+|  +| .|.++.++++ .|++|++++.+++-++.+++...-.++....... ..+.... ....+|+|+-+
T Consensus       169 ~~g~~vlV~gag~G~vG~~a~q~a~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~~~~~~~~~~~~v~~~t-~~~g~d~v~d~  247 (379)
T 3iup_A          169 LEGHSALVHTAAASNLGQMLNQICLKDGIKLVNIVRKQEQADLLKAQGAVHVCNAASPTFMQDLTEAL-VSTGATIAFDA  247 (379)
T ss_dssp             HTTCSCEEESSTTSHHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHTTCSCEEETTSTTHHHHHHHHH-HHHCCCEEEES
T ss_pred             cCCCEEEEECCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHhCCCcEEEeCCChHHHHHHHHHh-cCCCceEEEEC
Confidence            4667778884  44 3666666766 4899999999999999998764333333321111 1111111 12358999854

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=88.00  E-value=0.33  Score=42.00  Aligned_cols=97  Identities=15%  Similarity=0.132  Sum_probs=55.5

Q ss_pred             CCCeEEEEcCcc-cHhHHHH-HhhCCeEEEEcCCHHHHHHHhc-CC-CceEEeCCCCchhhhhhccCCCCceeeEEEccc
Q 037961           33 KRNLAWDVGTRS-GQAAASL-AQIYQHVIATDTSPKQLKFAIK-LP-NIRYQLTPTMSITELEQNVATQSSVDLVTIASA  108 (262)
Q Consensus        33 ~~~~vlDvGcG~-G~~~~~l-~~~~~~v~~vD~s~~~~~~a~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~  108 (262)
                      ++.+|+=+|+|. |...... ...|++|+++|.++.-++.+.+ .. .+.....+   ..+++..-   ..+|+|+.+-.
T Consensus       165 ~~~~V~ViGaG~iG~~~a~~l~~~Ga~V~~~d~~~~~~~~~~~~~g~~~~~~~~~---~~~l~~~~---~~~DvVi~~~g  238 (369)
T 2eez_A          165 APASVVILGGGTVGTNAAKIALGMGAQVTILDVNHKRLQYLDDVFGGRVITLTAT---EANIKKSV---QHADLLIGAVL  238 (369)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTTSEEEEECC---HHHHHHHH---HHCSEEEECCC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHhcCceEEEecCC---HHHHHHHH---hCCCEEEECCC
Confidence            357889999864 4443333 3458899999999988877654 21 11111111   12222221   25899987554


Q ss_pred             cccC-ChhHHHHHHHHhhcCCCeEEEEEe
Q 037961          109 LHWF-DLPQFYKQVKWVLKKPSGVIAAWT  136 (262)
Q Consensus       109 ~~~~-d~~~~l~~~~r~Lk~pgG~l~i~~  136 (262)
                      .... .+.-+.+++.+.+| +||+++...
T Consensus       239 ~~~~~~~~li~~~~l~~mk-~gg~iV~v~  266 (369)
T 2eez_A          239 VPGAKAPKLVTRDMLSLMK-EGAVIVDVA  266 (369)
T ss_dssp             -------CCSCHHHHTTSC-TTCEEEECC
T ss_pred             CCccccchhHHHHHHHhhc-CCCEEEEEe
Confidence            3321 11123567788899 999887644

>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1

Probab=87.97  E-value=2.2  Score=36.34  Aligned_cols=99  Identities=17%  Similarity=0.100  Sum_probs=62.5

Q ss_pred             hCCCCCeEEEEcCcc-cHhHHHHHh-h-CCeEEEEcCCHHHHHHHhcCCCceEEeCCCCchhhhhhccCCCCceeeEEEc
Q 037961           30 KTPKRNLAWDVGTRS-GQAAASLAQ-I-YQHVIATDTSPKQLKFAIKLPNIRYQLTPTMSITELEQNVATQSSVDLVTIA  106 (262)
Q Consensus        30 ~~~~~~~vlDvGcG~-G~~~~~l~~-~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~  106 (262)
                      ...++.+||=+|+|. |.++.++++ . |++|+++|.+++-++.+++...-.++.........+..+. ....+|+|+-.
T Consensus       183 ~~~~g~~VlV~GaG~vG~~avqlak~~~Ga~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~v~~~~-~g~g~Dvvid~  261 (359)
T 1h2b_A          183 TLYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLGADHVVDARRDPVKQVMELT-RGRGVNVAMDF  261 (359)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHTTCSEEEETTSCHHHHHHHHT-TTCCEEEEEES
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHhCCCEEEeccchHHHHHHHHh-CCCCCcEEEEC
Confidence            356788999999874 667777766 5 8899999999999999887633233332211011222221 12369999854


Q ss_pred             cccccCChhH--HHHHHHHhhcCCCeEEEEEec
Q 037961          107 SALHWFDLPQ--FYKQVKWVLKKPSGVIAAWTY  137 (262)
Q Consensus       107 ~~~~~~d~~~--~l~~~~r~Lk~pgG~l~i~~~  137 (262)
                      ..     ...  .++.+.++   +||+++++..
T Consensus       262 ~G-----~~~~~~~~~~~~~---~~G~~v~~g~  286 (359)
T 1h2b_A          262 VG-----SQATVDYTPYLLG---RMGRLIIVGY  286 (359)
T ss_dssp             SC-----CHHHHHHGGGGEE---EEEEEEECCC
T ss_pred             CC-----CchHHHHHHHhhc---CCCEEEEEeC
Confidence            33     122  55666666   4899888654

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=87.96  E-value=1.3  Score=36.63  Aligned_cols=88  Identities=26%  Similarity=0.163  Sum_probs=54.2

Q ss_pred             CeEEEEcCcc-c-HhHHHHHhhCCeEEEEcCCHHHHHHHhcC------------------------CCceEEeCCCCchh
Q 037961           35 NLAWDVGTRS-G-QAAASLAQIYQHVIATDTSPKQLKFAIKL------------------------PNIRYQLTPTMSIT   88 (262)
Q Consensus        35 ~~vlDvGcG~-G-~~~~~l~~~~~~v~~vD~s~~~~~~a~~~------------------------~~~~~~~~~~~~~~   88 (262)
                      .+|.=||+|+ | ..+..++..|.+|+..|.+++.++.+.+.                        .++... .      
T Consensus         5 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~-~------   77 (283)
T 4e12_A            5 TNVTVLGTGVLGSQIAFQTAFHGFAVTAYDINTDALDAAKKRFEGLAAVYEKEVAGAADGAAQKALGGIRYS-D------   77 (283)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHSTTCTTTHHHHHHHHCEEE-S------
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHcCeEEe-C------
Confidence            4577788886 2 34555667799999999999988876532                        011111 1      


Q ss_pred             hhhhccCCCCceeeEEEccccccCChhHHHHHHHHhhcCCCeEEE
Q 037961           89 ELEQNVATQSSVDLVTIASALHWFDLPQFYKQVKWVLKKPSGVIA  133 (262)
Q Consensus        89 ~~~~~~~~~~~~D~V~~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~  133 (262)
                      +.++.   -...|+|+.+-.-..--...+++++...++ |+..++
T Consensus        78 ~~~~~---~~~aDlVi~av~~~~~~~~~v~~~l~~~~~-~~~il~  118 (283)
T 4e12_A           78 DLAQA---VKDADLVIEAVPESLDLKRDIYTKLGELAP-AKTIFA  118 (283)
T ss_dssp             CHHHH---TTTCSEEEECCCSCHHHHHHHHHHHHHHSC-TTCEEE
T ss_pred             CHHHH---hccCCEEEEeccCcHHHHHHHHHHHHhhCC-CCcEEE
Confidence            11111   134799986643221123457888888998 776654

>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A

Probab=87.84  E-value=0.91  Score=38.80  Aligned_cols=100  Identities=8%  Similarity=0.053  Sum_probs=56.8

Q ss_pred             CCCC-CeEEEEcC-c-ccHhHHHHHhh-CCeEEEEcCCHHH----HHHHhcCCCceEEeCCC---Cch-hhhhhccC-CC
Q 037961           31 TPKR-NLAWDVGT-R-SGQAAASLAQI-YQHVIATDTSPKQ----LKFAIKLPNIRYQLTPT---MSI-TELEQNVA-TQ   97 (262)
Q Consensus        31 ~~~~-~~vlDvGc-G-~G~~~~~l~~~-~~~v~~vD~s~~~----~~~a~~~~~~~~~~~~~---~~~-~~~~~~~~-~~   97 (262)
                      .+++ .+||=.|+ | .|.++.++++. |++++++.-+++.    .+.++++..-.++..+.   ... ..+..... ..
T Consensus       164 ~~~g~~~VlV~Ga~G~vG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~i~~~t~~~~  243 (364)
T 1gu7_A          164 LTPGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKELGATQVITEDQNNSREFGPTIKEWIKQSG  243 (364)
T ss_dssp             CCTTTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTTHHHHHHHHHHHTCSEEEEHHHHHCGGGHHHHHHHHHHHT
T ss_pred             cCCCCcEEEECCCCcHHHHHHHHHHHHCCCEEEEEecCccccHHHHHHHHhcCCeEEEecCccchHHHHHHHHHHhhccC
Confidence            4577 89999997 4 48888888874 8898887644332    34455432112221110   000 01111100 12


Q ss_pred             CceeeEEEccccccCChhHHHHHHHHhhcCCCeEEEEEec
Q 037961           98 SSVDLVTIASALHWFDLPQFYKQVKWVLKKPSGVIAAWTY  137 (262)
Q Consensus        98 ~~~D~V~~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~  137 (262)
                      ..+|+|+-...     -..+. .+.++|+ +||+++++..
T Consensus       244 ~g~Dvvid~~G-----~~~~~-~~~~~l~-~~G~~v~~g~  276 (364)
T 1gu7_A          244 GEAKLALNCVG-----GKSST-GIARKLN-NNGLMLTYGG  276 (364)
T ss_dssp             CCEEEEEESSC-----HHHHH-HHHHTSC-TTCEEEECCC
T ss_pred             CCceEEEECCC-----chhHH-HHHHHhc-cCCEEEEecC
Confidence            46999985433     12333 7789999 9999998654

>3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa}

Probab=87.71  E-value=0.83  Score=43.75  Aligned_cols=97  Identities=20%  Similarity=0.098  Sum_probs=59.3

Q ss_pred             CCCCeEEEEcC-c-ccHhHHHHHhh-CCeEEEEcCCHHHHHHHhcCCCceEEeCCCCch-hhhhhccCCCCceeeEEEcc
Q 037961           32 PKRNLAWDVGT-R-SGQAAASLAQI-YQHVIATDTSPKQLKFAIKLPNIRYQLTPTMSI-TELEQNVATQSSVDLVTIAS  107 (262)
Q Consensus        32 ~~~~~vlDvGc-G-~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~D~V~~~~  107 (262)
                      .++.+||=.|+ | .|..+.++++. |++|++++.++. .+.++ ...-.+......++ ..+.... ....+|+|+-+.
T Consensus       344 ~~G~~VLI~gaaGgvG~~aiqlAk~~Ga~V~~t~~~~k-~~~l~-lga~~v~~~~~~~~~~~i~~~t-~g~GvDvVld~~  420 (795)
T 3slk_A          344 RPGESLLVHSAAGGVGMAAIQLARHLGAEVYATASEDK-WQAVE-LSREHLASSRTCDFEQQFLGAT-GGRGVDVVLNSL  420 (795)
T ss_dssp             CTTCCEEEESTTBHHHHHHHHHHHHTTCCEEEECCGGG-GGGSC-SCGGGEECSSSSTHHHHHHHHS-CSSCCSEEEECC
T ss_pred             CCCCEEEEecCCCHHHHHHHHHHHHcCCEEEEEeChHH-hhhhh-cChhheeecCChhHHHHHHHHc-CCCCeEEEEECC
Confidence            57888999985 4 58899999885 899999986642 22222 21111222111111 1122221 234699999643


Q ss_pred             ccccCChhHHHHHHHHhhcCCCeEEEEEecC
Q 037961          108 ALHWFDLPQFYKQVKWVLKKPSGVIAAWTYT  138 (262)
Q Consensus       108 ~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~~  138 (262)
                      +      ...+....++|+ |||+++.....
T Consensus       421 g------g~~~~~~l~~l~-~~Gr~v~iG~~  444 (795)
T 3slk_A          421 A------GEFADASLRMLP-RGGRFLELGKT  444 (795)
T ss_dssp             C------TTTTHHHHTSCT-TCEEEEECCST
T ss_pred             C------cHHHHHHHHHhc-CCCEEEEeccc
Confidence            2      245688899999 99999986643

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=87.68  E-value=4  Score=33.30  Aligned_cols=87  Identities=21%  Similarity=0.281  Sum_probs=53.3

Q ss_pred             eEEEEcCcc-c-HhHHHHHhhCC--eEEEEcCCHHHHHHHhcCCCceEEeCCCCchhhhhhccCCCC-ceeeEEEccccc
Q 037961           36 LAWDVGTRS-G-QAAASLAQIYQ--HVIATDTSPKQLKFAIKLPNIRYQLTPTMSITELEQNVATQS-SVDLVTIASALH  110 (262)
Q Consensus        36 ~vlDvGcG~-G-~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~D~V~~~~~~~  110 (262)
                      +|.=||+|. | .++..++..|.  +|+++|.+++.++.+++..-......+      .++.   -. ..|+|+..-...
T Consensus         3 ~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~g~~~~~~~~------~~~~---~~~~aDvVilavp~~   73 (281)
T 2g5c_A            3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTS------IAKV---EDFSPDFVMLSSPVR   73 (281)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESC------GGGG---GGTCCSEEEECSCHH
T ss_pred             EEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHCCCcccccCC------HHHH---hcCCCCEEEEcCCHH
Confidence            467788886 3 34445566676  899999999988877654211111111      1111   12 579998764433


Q ss_pred             cCChhHHHHHHHHhhcCCCeEEEE
Q 037961          111 WFDLPQFYKQVKWVLKKPSGVIAA  134 (262)
Q Consensus       111 ~~d~~~~l~~~~r~Lk~pgG~l~i  134 (262)
                        ....++.++...++ ++..++.
T Consensus        74 --~~~~v~~~l~~~l~-~~~iv~~   94 (281)
T 2g5c_A           74 --TFREIAKKLSYILS-EDATVTD   94 (281)
T ss_dssp             --HHHHHHHHHHHHSC-TTCEEEE
T ss_pred             --HHHHHHHHHHhhCC-CCcEEEE
Confidence              23456777888888 8876554

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=87.60  E-value=0.54  Score=40.86  Aligned_cols=100  Identities=12%  Similarity=0.067  Sum_probs=58.8

Q ss_pred             CCCeEEEEcCcc-cHhHHHHHh-hCCeEEEEcCCHHHHHHHhcCCCceEEeCC-------CCc----h----hhhhhccC
Q 037961           33 KRNLAWDVGTRS-GQAAASLAQ-IYQHVIATDTSPKQLKFAIKLPNIRYQLTP-------TMS----I----TELEQNVA   95 (262)
Q Consensus        33 ~~~~vlDvGcG~-G~~~~~l~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~-------~~~----~----~~~~~~~~   95 (262)
                      ++.+|+=+|+|. |..+..++. .|++|+++|.++.-++.+.+. +..+...+       ...    .    ...+.+.-
T Consensus       183 ~~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~~l-Ga~~~~l~~~~~~~~gya~~~~~~~~~~~~~~l~e  261 (381)
T 3p2y_A          183 KPASALVLGVGVAGLQALATAKRLGAKTTGYDVRPEVAEQVRSV-GAQWLDLGIDAAGEGGYARELSEAERAQQQQALED  261 (381)
T ss_dssp             CCCEEEEESCSHHHHHHHHHHHHHTCEEEEECSSGGGHHHHHHT-TCEECCCC-------------CHHHHHHHHHHHHH
T ss_pred             CCCEEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc-CCeEEeccccccccccchhhhhHHHHhhhHHHHHH
Confidence            567889999985 555554444 599999999999988888764 33332210       000    0    00111110


Q ss_pred             CCCceeeEEEccccccC-ChhHHHHHHHHhhcCCCeEEEE
Q 037961           96 TQSSVDLVTIASALHWF-DLPQFYKQVKWVLKKPSGVIAA  134 (262)
Q Consensus        96 ~~~~~D~V~~~~~~~~~-d~~~~l~~~~r~Lk~pgG~l~i  134 (262)
                      .-...|+|+..-...-- .+.-+-+++.+.+| ||++++=
T Consensus       262 ~l~~aDIVI~tv~iPg~~ap~Lvt~emv~~Mk-pGsVIVD  300 (381)
T 3p2y_A          262 AITKFDIVITTALVPGRPAPRLVTAAAATGMQ-PGSVVVD  300 (381)
T ss_dssp             HHTTCSEEEECCCCTTSCCCCCBCHHHHHTSC-TTCEEEE
T ss_pred             HHhcCCEEEECCCCCCcccceeecHHHHhcCC-CCcEEEE
Confidence            12468999965322211 12224478889999 8988775

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=87.24  E-value=3.6  Score=36.51  Aligned_cols=39  Identities=21%  Similarity=0.129  Sum_probs=29.0

Q ss_pred             CeEEEEcCcc-c-HhHHHHHhhCCeEEEEcCCHHHHHHHhc
Q 037961           35 NLAWDVGTRS-G-QAAASLAQIYQHVIATDTSPKQLKFAIK   73 (262)
Q Consensus        35 ~~vlDvGcG~-G-~~~~~l~~~~~~v~~vD~s~~~~~~a~~   73 (262)
                      +.|.=+|+|. | ..+..|++.|.+|+++|.+++-++..++
T Consensus         3 mkI~VIG~G~vG~~lA~~La~~G~~V~~~D~~~~~v~~l~~   43 (450)
T 3gg2_A            3 LDIAVVGIGYVGLVSATCFAELGANVRCIDTDRNKIEQLNS   43 (450)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHH
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHc
Confidence            3567788875 3 3344566779999999999998887664

>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*

Probab=87.01  E-value=6.1  Score=34.81  Aligned_cols=101  Identities=15%  Similarity=0.041  Sum_probs=53.6

Q ss_pred             CCCCeEEEEcCcc-cH-hHHHHHhhCCeEEEEcCCHHHHHHHhcCCCceEEeCC-CCc-----hhhhhhccCCCCceeeE
Q 037961           32 PKRNLAWDVGTRS-GQ-AAASLAQIYQHVIATDTSPKQLKFAIKLPNIRYQLTP-TMS-----ITELEQNVATQSSVDLV  103 (262)
Q Consensus        32 ~~~~~vlDvGcG~-G~-~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~-~~~-----~~~~~~~~~~~~~~D~V  103 (262)
                      ..+..+--+|+|. |. .+..|++.|.+|++.|++++-++..++...-.+..+- ++-     .+.+.... .....|+|
T Consensus         9 ~~~~~~~ViGlGyvGlp~A~~La~~G~~V~~~D~~~~kv~~L~~g~~pi~epgl~~ll~~~~~~g~l~~tt-d~~~aDvv   87 (431)
T 3ojo_A            9 HHGSKLTVVGLGYIGLPTSIMFAKHGVDVLGVDINQQTIDKLQNGQISIEEPGLQEVYEEVLSSGKLKVST-TPEASDVF   87 (431)
T ss_dssp             ---CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEES-SCCCCSEE
T ss_pred             ccCCccEEEeeCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHhhcccCceEEeC-chhhCCEE
Confidence            3455656678875 33 3445667899999999999999887753110011000 000     00000000 11246888


Q ss_pred             EEcccccc-------CC---hhHHHHHHHHhhcCCCeEEEE
Q 037961          104 TIASALHW-------FD---LPQFYKQVKWVLKKPSGVIAA  134 (262)
Q Consensus       104 ~~~~~~~~-------~d---~~~~l~~~~r~Lk~pgG~l~i  134 (262)
                      +.+-.-..       .|   ...+.+.+.+.|+ +|-+++.
T Consensus        88 ii~VpTp~~~~~~~~~Dl~~V~~~~~~i~~~l~-~g~iVV~  127 (431)
T 3ojo_A           88 IIAVPTPNNDDQYRSCDISLVMRALDSILPFLK-KGNTIIV  127 (431)
T ss_dssp             EECCCCCBCSSSSCBBCCHHHHHHHHHHGGGCC-TTEEEEE
T ss_pred             EEEeCCCccccccCCccHHHHHHHHHHHHHhCC-CCCEEEE
Confidence            86543332       13   3345677888898 7765555

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=86.84  E-value=0.63  Score=40.07  Aligned_cols=98  Identities=16%  Similarity=0.107  Sum_probs=58.1

Q ss_pred             CCeEEEEcCcc-cHhHHHHHh-hCCeEEEEcCCHHHHHHHhcC--CCceEEeCCCCchhhhhhccCCCCceeeEEEcccc
Q 037961           34 RNLAWDVGTRS-GQAAASLAQ-IYQHVIATDTSPKQLKFAIKL--PNIRYQLTPTMSITELEQNVATQSSVDLVTIASAL  109 (262)
Q Consensus        34 ~~~vlDvGcG~-G~~~~~l~~-~~~~v~~vD~s~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~  109 (262)
                      +.+|+=+|+|. |..+...+. .|++|+++|.+++-++.+++.  ..+.....+   ..++.+.   -..+|+|+.....
T Consensus       167 ~~~VlViGaGgvG~~aa~~a~~~Ga~V~v~dr~~~r~~~~~~~~~~~~~~~~~~---~~~~~~~---~~~~DvVI~~~~~  240 (361)
T 1pjc_A          167 PGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGSRVELLYSN---SAEIETA---VAEADLLIGAVLV  240 (361)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGSEEEECC---HHHHHHH---HHTCSEEEECCCC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhhCceeEeeeCC---HHHHHHH---HcCCCEEEECCCc
Confidence            47899999964 544444443 588999999999888777542  122222211   1122211   1258999865544


Q ss_pred             ccC-ChhHHHHHHHHhhcCCCeEEEEEecC
Q 037961          110 HWF-DLPQFYKQVKWVLKKPSGVIAAWTYT  138 (262)
Q Consensus       110 ~~~-d~~~~l~~~~r~Lk~pgG~l~i~~~~  138 (262)
                      ... .+.-+.++..+.|+ |||+++-..+.
T Consensus       241 ~~~~~~~li~~~~~~~~~-~g~~ivdv~~~  269 (361)
T 1pjc_A          241 PGRRAPILVPASLVEQMR-TGSVIVDVAVD  269 (361)
T ss_dssp             TTSSCCCCBCHHHHTTSC-TTCEEEETTCT
T ss_pred             CCCCCCeecCHHHHhhCC-CCCEEEEEecC
Confidence            322 22213456778899 99988875543

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=86.63  E-value=0.52  Score=38.53  Aligned_cols=41  Identities=17%  Similarity=0.159  Sum_probs=30.9

Q ss_pred             CCCCceeeEEEccccccC---------------ChhHHHHHHHHhhcCCCeEEEEEe
Q 037961           95 ATQSSVDLVTIASALHWF---------------DLPQFYKQVKWVLKKPSGVIAAWT  136 (262)
Q Consensus        95 ~~~~~~D~V~~~~~~~~~---------------d~~~~l~~~~r~Lk~pgG~l~i~~  136 (262)
                      +++++||+|++......-               -....++++.++|+ |||.++++.
T Consensus        19 l~~~~vdlI~~DPPY~~~~~~~d~~~~~~~y~~~~~~~l~~~~~~Lk-~~g~i~v~~   74 (260)
T 1g60_A           19 VENKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLD-KDGSLYIFN   74 (260)
T ss_dssp             SCTTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEE-EEEEEEEEE
T ss_pred             ccccccCEEEECCCCCCCcccccccCCHHHHHHHHHHHHHHHHHHhc-CCeEEEEEc
Confidence            356789999987665322               13457889999999 999999864

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=86.42  E-value=1  Score=39.36  Aligned_cols=99  Identities=18%  Similarity=0.161  Sum_probs=58.0

Q ss_pred             CCCeEEEEcCcc-cHhHHHHHh-hCCeEEEEcCCHHHHHHHhcCCCceEEeCCC-------------Cch-------hhh
Q 037961           33 KRNLAWDVGTRS-GQAAASLAQ-IYQHVIATDTSPKQLKFAIKLPNIRYQLTPT-------------MSI-------TEL   90 (262)
Q Consensus        33 ~~~~vlDvGcG~-G~~~~~l~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~-------------~~~-------~~~   90 (262)
                      ++.+|+=+|+|. |..+..++. .|++|+++|.++.-++.++.. +..+...+.             .+.       ..+
T Consensus       171 ~g~~V~ViGaG~iG~~aa~~a~~~Ga~V~v~D~~~~~~~~~~~l-Ga~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l  249 (401)
T 1x13_A          171 PPAKVMVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSM-GAEFLELDFKEEAGSGDGYAKVMSDAFIKAEMELF  249 (401)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCGGGHHHHHHT-TCEECCC--------CCHHHHHHSHHHHHHHHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHc-CCEEEEecccccccccccchhhccHHHHHHHHHHH
Confidence            467889999986 655555554 588999999999888877655 333321110             000       011


Q ss_pred             hhccCCCCceeeEEEccccccCChhH-HHHHHHHhhcCCCeEEEEEe
Q 037961           91 EQNVATQSSVDLVTIASALHWFDLPQ-FYKQVKWVLKKPSGVIAAWT  136 (262)
Q Consensus        91 ~~~~~~~~~~D~V~~~~~~~~~d~~~-~l~~~~r~Lk~pgG~l~i~~  136 (262)
                      .+.   -...|+|+..-.+.-..... +-+++.+.+| |||+++-..
T Consensus       250 ~e~---~~~aDvVI~~~~~pg~~ap~li~~~~l~~mk-~g~vIVdva  292 (401)
T 1x13_A          250 AAQ---AKEVDIIVTTALIPGKPAPKLITREMVDSMK-AGSVIVDLA  292 (401)
T ss_dssp             HHH---HHHCSEEEECCCCTTSCCCCCBCHHHHHTSC-TTCEEEETT
T ss_pred             HHH---hCCCCEEEECCccCCCCCCeeeCHHHHhcCC-CCcEEEEEc
Confidence            111   12479998653221111112 2356778899 999887644

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=86.38  E-value=5.7  Score=30.99  Aligned_cols=92  Identities=12%  Similarity=-0.020  Sum_probs=54.5

Q ss_pred             eEEEEcCcccHhHHH----HHhhCCeEEEEcCCHHHHHHHhcCCCceEEeCCCCchhhhhhccCCCCceeeEEEcccccc
Q 037961           36 LAWDVGTRSGQAAAS----LAQIYQHVIATDTSPKQLKFAIKLPNIRYQLTPTMSITELEQNVATQSSVDLVTIASALHW  111 (262)
Q Consensus        36 ~vlDvGcG~G~~~~~----l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~~~  111 (262)
                      .|+=+|+|  ..+..    |.+.+.+|+++|.+++.++...+..++.++.+|..+....+...+  ...|+|++...-. 
T Consensus         2 ~iiIiG~G--~~G~~la~~L~~~g~~v~vid~~~~~~~~l~~~~~~~~i~gd~~~~~~l~~a~i--~~ad~vi~~~~~d-   76 (218)
T 3l4b_C            2 KVIIIGGE--TTAYYLARSMLSRKYGVVIINKDRELCEEFAKKLKATIIHGDGSHKEILRDAEV--SKNDVVVILTPRD-   76 (218)
T ss_dssp             CEEEECCH--HHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHSSSEEEESCTTSHHHHHHHTC--CTTCEEEECCSCH-
T ss_pred             EEEEECCC--HHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHcCCeEEEcCCCCHHHHHhcCc--ccCCEEEEecCCc-
Confidence            35666764  44444    445689999999999998876544467788887322223333322  3579988753311 


Q ss_pred             CChhHHHHHHHHhhcCCCeEEEE
Q 037961          112 FDLPQFYKQVKWVLKKPSGVIAA  134 (262)
Q Consensus       112 ~d~~~~l~~~~r~Lk~pgG~l~i  134 (262)
                       .....+....+-+. |...++.
T Consensus        77 -~~n~~~~~~a~~~~-~~~~iia   97 (218)
T 3l4b_C           77 -EVNLFIAQLVMKDF-GVKRVVS   97 (218)
T ss_dssp             -HHHHHHHHHHHHTS-CCCEEEE
T ss_pred             -HHHHHHHHHHHHHc-CCCeEEE
Confidence             11224555556555 5655554

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=86.16  E-value=6.3  Score=32.53  Aligned_cols=90  Identities=11%  Similarity=0.024  Sum_probs=56.4

Q ss_pred             CCCeEEEEcCcc-cHhHHH-HHhhCCeEEEEcCCHHHHHHHhcCCCceEEeCCCCchhhhhhccCCCCceeeEEEccccc
Q 037961           33 KRNLAWDVGTRS-GQAAAS-LAQIYQHVIATDTSPKQLKFAIKLPNIRYQLTPTMSITELEQNVATQSSVDLVTIASALH  110 (262)
Q Consensus        33 ~~~~vlDvGcG~-G~~~~~-l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~~  110 (262)
                      .+.+|+=+|+|. |..... +...|.+|++.|.++.-.+.+.+. ++.....     .+.++.   -...|+|+.....+
T Consensus       154 ~g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~-g~~~~~~-----~~l~~~---l~~aDvVi~~~p~~  224 (293)
T 3d4o_A          154 HGANVAVLGLGRVGMSVARKFAALGAKVKVGARESDLLARIAEM-GMEPFHI-----SKAAQE---LRDVDVCINTIPAL  224 (293)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHT-TSEEEEG-----GGHHHH---TTTCSEEEECCSSC
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHC-CCeecCh-----hhHHHH---hcCCCEEEECCChH
Confidence            567899999875 443333 334588999999998766555443 3333211     122222   13589999887776


Q ss_pred             cCChhHHHHHHHHhhcCCCeEEEEEec
Q 037961          111 WFDLPQFYKQVKWVLKKPSGVIAAWTY  137 (262)
Q Consensus       111 ~~d~~~~l~~~~r~Lk~pgG~l~i~~~  137 (262)
                      .++.     +..+.+| ||+.++-...
T Consensus       225 ~i~~-----~~l~~mk-~~~~lin~ar  245 (293)
T 3d4o_A          225 VVTA-----NVLAEMP-SHTFVIDLAS  245 (293)
T ss_dssp             CBCH-----HHHHHSC-TTCEEEECSS
T ss_pred             HhCH-----HHHHhcC-CCCEEEEecC
Confidence            6654     2445789 8988775443

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=85.95  E-value=5  Score=32.61  Aligned_cols=85  Identities=12%  Similarity=0.118  Sum_probs=52.0

Q ss_pred             eEEEEcCcc-c-HhHHHHHhhCCeEEEEcCCHHHHHHHhcCCCceEEeCCCCchhhhhhccCCCCceeeEEEccccccCC
Q 037961           36 LAWDVGTRS-G-QAAASLAQIYQHVIATDTSPKQLKFAIKLPNIRYQLTPTMSITELEQNVATQSSVDLVTIASALHWFD  113 (262)
Q Consensus        36 ~vlDvGcG~-G-~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~~~~d  113 (262)
                      +|.=+|||. | .++..|.+.+.+|+++|.+++.++.+.+..-......      +.++.    ...|+|+..-.-.  .
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~------~~~~~----~~~D~vi~av~~~--~   69 (279)
T 2f1k_A            2 KIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVERQLVDEAGQ------DLSLL----QTAKIIFLCTPIQ--L   69 (279)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTSCSEEES------CGGGG----TTCSEEEECSCHH--H
T ss_pred             EEEEEcCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHhCCCCccccC------CHHHh----CCCCEEEEECCHH--H
Confidence            466788886 3 3445566678899999999998887764321111111      12221    3579998764432  2


Q ss_pred             hhHHHHHHHHhhcCCCeEEE
Q 037961          114 LPQFYKQVKWVLKKPSGVIA  133 (262)
Q Consensus       114 ~~~~l~~~~r~Lk~pgG~l~  133 (262)
                      ...+++++...++ ||..++
T Consensus        70 ~~~~~~~l~~~~~-~~~~vv   88 (279)
T 2f1k_A           70 ILPTLEKLIPHLS-PTAIVT   88 (279)
T ss_dssp             HHHHHHHHGGGSC-TTCEEE
T ss_pred             HHHHHHHHHhhCC-CCCEEE
Confidence            3456777777788 776554

>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A

Probab=85.86  E-value=0.64  Score=39.40  Aligned_cols=42  Identities=21%  Similarity=0.353  Sum_probs=32.1

Q ss_pred             CCCCceeeEEEccccc-----------cC-ChhHHHHHHHHhhcCCCeEEEEEec
Q 037961           95 ATQSSVDLVTIASALH-----------WF-DLPQFYKQVKWVLKKPSGVIAAWTY  137 (262)
Q Consensus        95 ~~~~~~D~V~~~~~~~-----------~~-d~~~~l~~~~r~Lk~pgG~l~i~~~  137 (262)
                      +++++||+|++.....           |+ -....+.++.++|+ |||.++++..
T Consensus        54 l~~~svDlI~tDPPY~~~~d~~~~~~~~~~~~~~~l~~~~rvLk-~~G~i~i~~~  107 (319)
T 1eg2_A           54 LPDDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLS-PTGSIAIFGG  107 (319)
T ss_dssp             SCTTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEE-EEEEEEEEEC
T ss_pred             CccCCcCEEEECCCCCCCCCCccCHHHHHHHHHHHHHHHHHHcC-CCeEEEEEcC
Confidence            4577999999976653           22 24567889999999 9999998654

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=85.69  E-value=1.3  Score=39.57  Aligned_cols=69  Identities=14%  Similarity=0.087  Sum_probs=46.1

Q ss_pred             CCeEEEEcCcccHhHHHHH----hhCCeEEEEcCCHHHHHHHhcCCCceEEeCCCCchhhhhhccCCCCceeeEEEc
Q 037961           34 RNLAWDVGTRSGQAAASLA----QIYQHVIATDTSPKQLKFAIKLPNIRYQLTPTMSITELEQNVATQSSVDLVTIA  106 (262)
Q Consensus        34 ~~~vlDvGcG~G~~~~~l~----~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~  106 (262)
                      .++|+=+|||  ..+..++    ..+.+|+.+|.+++.++.+.....+..+.|+..+..-+++.+.  ...|++++.
T Consensus         3 ~M~iiI~G~G--~vG~~la~~L~~~~~~v~vId~d~~~~~~~~~~~~~~~i~Gd~~~~~~L~~Agi--~~ad~~ia~   75 (461)
T 4g65_A            3 AMKIIILGAG--QVGGTLAENLVGENNDITIVDKDGDRLRELQDKYDLRVVNGHASHPDVLHEAGA--QDADMLVAV   75 (461)
T ss_dssp             CEEEEEECCS--HHHHHHHHHTCSTTEEEEEEESCHHHHHHHHHHSSCEEEESCTTCHHHHHHHTT--TTCSEEEEC
T ss_pred             cCEEEEECCC--HHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHhcCcEEEEEcCCCHHHHHhcCC--CcCCEEEEE
Confidence            3456667776  3444444    4578999999999999987755578888888333333444443  347888863

>1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52

Probab=85.56  E-value=3.1  Score=36.21  Aligned_cols=40  Identities=13%  Similarity=0.071  Sum_probs=30.6

Q ss_pred             CCCeEEEEcCcccHhHHHHHhh---------CCeEEEEcCCHHHHHHHh
Q 037961           33 KRNLAWDVGTRSGQAAASLAQI---------YQHVIATDTSPKQLKFAI   72 (262)
Q Consensus        33 ~~~~vlDvGcG~G~~~~~l~~~---------~~~v~~vD~s~~~~~~a~   72 (262)
                      ..-.|+|+|+|.|.++..+.+.         ..+++.||+|+...+.-+
T Consensus        80 ~~~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~Sp~Lr~~Q~  128 (387)
T 1zkd_A           80 QTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQ  128 (387)
T ss_dssp             SSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHH
T ss_pred             CCcEEEEECCCcchHHHHHHHHHHhCCccccccEEEEEecCHHHHHHHH
Confidence            3346899999999998877642         137999999998876433

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=85.53  E-value=5.7  Score=32.89  Aligned_cols=90  Identities=16%  Similarity=0.141  Sum_probs=56.6

Q ss_pred             CCCeEEEEcCcc-cHhHH-HHHhhCCeEEEEcCCHHHHHHHhcCCCceEEeCCCCchhhhhhccCCCCceeeEEEccccc
Q 037961           33 KRNLAWDVGTRS-GQAAA-SLAQIYQHVIATDTSPKQLKFAIKLPNIRYQLTPTMSITELEQNVATQSSVDLVTIASALH  110 (262)
Q Consensus        33 ~~~~vlDvGcG~-G~~~~-~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~~  110 (262)
                      .+.+|+=+|+|. |.... .+...|.+|++.|.++.-.+.+.+. ++.....     .+.++.   -...|+|+.....+
T Consensus       156 ~g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~d~~~~~~~~~~~~-g~~~~~~-----~~l~~~---l~~aDvVi~~~p~~  226 (300)
T 2rir_A          156 HGSQVAVLGLGRTGMTIARTFAALGANVKVGARSSAHLARITEM-GLVPFHT-----DELKEH---VKDIDICINTIPSM  226 (300)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHT-TCEEEEG-----GGHHHH---STTCSEEEECCSSC
T ss_pred             CCCEEEEEcccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHC-CCeEEch-----hhHHHH---hhCCCEEEECCChh
Confidence            567899999875 43333 3334588999999998766655442 3333211     123222   13589999888877


Q ss_pred             cCChhHHHHHHHHhhcCCCeEEEEEec
Q 037961          111 WFDLPQFYKQVKWVLKKPSGVIAAWTY  137 (262)
Q Consensus       111 ~~d~~~~l~~~~r~Lk~pgG~l~i~~~  137 (262)
                      .++.+     ..+.+| ||+.++=...
T Consensus       227 ~i~~~-----~~~~mk-~g~~lin~a~  247 (300)
T 2rir_A          227 ILNQT-----VLSSMT-PKTLILDLAS  247 (300)
T ss_dssp             CBCHH-----HHTTSC-TTCEEEECSS
T ss_pred             hhCHH-----HHHhCC-CCCEEEEEeC
Confidence            66532     456789 8987765443

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=85.27  E-value=8.9  Score=27.92  Aligned_cols=93  Identities=12%  Similarity=-0.067  Sum_probs=53.8

Q ss_pred             CeEEEEcCcccHhHHH----HHhhCCeEEEEcCC-HHHHHHHhc--CCCceEEeCCCCchhhhhhccCCCCceeeEEEcc
Q 037961           35 NLAWDVGTRSGQAAAS----LAQIYQHVIATDTS-PKQLKFAIK--LPNIRYQLTPTMSITELEQNVATQSSVDLVTIAS  107 (262)
Q Consensus        35 ~~vlDvGcG~G~~~~~----l~~~~~~v~~vD~s-~~~~~~a~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~  107 (262)
                      ..++=+|+|  ..+..    |...+.+|+++|.+ ++.++....  ..++.++.+|..+........+  ...|+|++..
T Consensus         4 ~~vlI~G~G--~vG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i--~~ad~vi~~~   79 (153)
T 1id1_A            4 DHFIVCGHS--ILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGI--DRCRAILALS   79 (153)
T ss_dssp             SCEEEECCS--HHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHCTTCEEEESCTTSHHHHHHHTT--TTCSEEEECS
T ss_pred             CcEEEECCC--HHHHHHHHHHHHCCCCEEEEECCChHHHHHHHHhhcCCCeEEEcCCCCHHHHHHcCh--hhCCEEEEec
Confidence            456777765  44444    44468999999997 454443332  2468888887222222333323  3578888764


Q ss_pred             ccccCChhHHHHHHHHhhcCCCeEEEE
Q 037961          108 ALHWFDLPQFYKQVKWVLKKPSGVIAA  134 (262)
Q Consensus       108 ~~~~~d~~~~l~~~~r~Lk~pgG~l~i  134 (262)
                      .-.  .....+....+-+. |...++.
T Consensus        80 ~~d--~~n~~~~~~a~~~~-~~~~ii~  103 (153)
T 1id1_A           80 DND--ADNAFVVLSAKDMS-SDVKTVL  103 (153)
T ss_dssp             SCH--HHHHHHHHHHHHHT-SSSCEEE
T ss_pred             CCh--HHHHHHHHHHHHHC-CCCEEEE
Confidence            321  22335566677777 6666665

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=85.19  E-value=3.7  Score=28.13  Aligned_cols=71  Identities=21%  Similarity=0.111  Sum_probs=43.2

Q ss_pred             CCeEEEEcCcc-cHh-HHHHHhhC-CeEEEEcCCHHHHHHHhcCCCceEEeCCCCchhhhhhccCCCCceeeEEEccc
Q 037961           34 RNLAWDVGTRS-GQA-AASLAQIY-QHVIATDTSPKQLKFAIKLPNIRYQLTPTMSITELEQNVATQSSVDLVTIASA  108 (262)
Q Consensus        34 ~~~vlDvGcG~-G~~-~~~l~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~  108 (262)
                      ...|+=+|+|. |.. ...|.+.+ .+|+++|.++.-++.+. ..++.+...+.....+.... +  ..+|+|+..-.
T Consensus         5 ~~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~-~~~~~~~~~d~~~~~~~~~~-~--~~~d~vi~~~~   78 (118)
T 3ic5_A            5 RWNICVVGAGKIGQMIAALLKTSSNYSVTVADHDLAALAVLN-RMGVATKQVDAKDEAGLAKA-L--GGFDAVISAAP   78 (118)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHCSSEEEEEEESCHHHHHHHH-TTTCEEEECCTTCHHHHHHH-T--TTCSEEEECSC
T ss_pred             cCeEEEECCCHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHH-hCCCcEEEecCCCHHHHHHH-H--cCCCEEEECCC
Confidence            35688899843 322 22344567 79999999998887766 34566666662111222222 1  25899987654

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=85.06  E-value=5.8  Score=34.83  Aligned_cols=38  Identities=21%  Similarity=0.198  Sum_probs=28.9

Q ss_pred             eEEEEcCcc-cH-hHHHHHhhCCeEEEEcCCHHHHHHHhc
Q 037961           36 LAWDVGTRS-GQ-AAASLAQIYQHVIATDTSPKQLKFAIK   73 (262)
Q Consensus        36 ~vlDvGcG~-G~-~~~~l~~~~~~v~~vD~s~~~~~~a~~   73 (262)
                      .|.=+|+|. |. ++..|++.|.+|+++|.+++.++..++
T Consensus         2 kI~VIG~G~vG~~~A~~la~~G~~V~~~d~~~~~~~~l~~   41 (436)
T 1mv8_A            2 RISIFGLGYVGAVCAGCLSARGHEVIGVDVSSTKIDLINQ   41 (436)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHT
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHhC
Confidence            456688886 33 445567779999999999999887765

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=84.43  E-value=3.9  Score=35.36  Aligned_cols=113  Identities=15%  Similarity=0.076  Sum_probs=72.8

Q ss_pred             CCCChHHHHHHHHhhCC-CCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhcCCCceEEeCCCCchhhhhhcc
Q 037961           16 RPNYPKELFKLIASKTP-KRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKLPNIRYQLTPTMSITELEQNV   94 (262)
Q Consensus        16 rp~yp~~~~~~l~~~~~-~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~   94 (262)
                      -..||+...+.|+.+.. .+..||.++.+.|.++..+.. ..+++.+.-|-...+..+.. ++......        .+.
T Consensus        27 ~~~~~~~~~~~l~~~~~~~~~~~l~~n~~~g~~~~~~~~-~~~~~~~~~~~~~~~~l~~~-~~~~~~~~--------~~~   96 (381)
T 3dmg_A           27 ARGYRDPVHDLLQKTVEPFGERALDLNPGVGWGSLPLEG-RMAVERLETSRAAFRCLTAS-GLQARLAL--------PWE   96 (381)
T ss_dssp             CSSSSCHHHHHHHTTCCCCSSEEEESSCTTSTTTGGGBT-TBEEEEEECBHHHHHHHHHT-TCCCEECC--------GGG
T ss_pred             CCCCCChHHHHHHHHHHHhCCcEEEecCCCCccccccCC-CCceEEEeCcHHHHHHHHHc-CCCccccC--------Ccc
Confidence            35788888888888873 457899999999987766643 36778776665555544432 22211111        111


Q ss_pred             CCCCceeeEEEccccccC--ChhHHHHHHHHhhcCCCeEEEEEecCC
Q 037961           95 ATQSSVDLVTIASALHWF--DLPQFYKQVKWVLKKPSGVIAAWTYTM  139 (262)
Q Consensus        95 ~~~~~~D~V~~~~~~~~~--d~~~~l~~~~r~Lk~pgG~l~i~~~~~  139 (262)
                      .+...||+|+.-..=+--  ..+..+.++.+.|+ |||.+++..-..
T Consensus        97 ~~~~~~d~v~~~~Pk~k~~~~~~~~l~~~~~~l~-~g~~i~~~g~~~  142 (381)
T 3dmg_A           97 AAAGAYDLVVLALPAGRGTAYVQASLVAAARALR-MGGRLYLAGDKN  142 (381)
T ss_dssp             SCTTCEEEEEEECCGGGCHHHHHHHHHHHHHHEE-EEEEEEEEEEGG
T ss_pred             CCcCCCCEEEEECCcchhHHHHHHHHHHHHHhCC-CCCEEEEEEccH
Confidence            245679999865442211  13457888889999 999999877543

>3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A*

Probab=84.21  E-value=2.8  Score=41.11  Aligned_cols=80  Identities=11%  Similarity=0.011  Sum_probs=54.6

Q ss_pred             CCCeEEEEcCcccHhHHHHHhhCC-e-EEEEcCCHHHHHHHhc-CCCceEEeCC--CCc----hhhhhhc---cC-CCCc
Q 037961           33 KRNLAWDVGTRSGQAAASLAQIYQ-H-VIATDTSPKQLKFAIK-LPNIRYQLTP--TMS----ITELEQN---VA-TQSS   99 (262)
Q Consensus        33 ~~~~vlDvGcG~G~~~~~l~~~~~-~-v~~vD~s~~~~~~a~~-~~~~~~~~~~--~~~----~~~~~~~---~~-~~~~   99 (262)
                      ...+++|+-||.|.++..+...|. + +.++|+++..++.-+. +++..+..+|  .+.    .+++...   .+ ..+.
T Consensus       539 ~~l~~iDLFaG~GGlslGl~~AG~~~vv~avEid~~A~~ty~~N~p~~~~~~~DI~~l~~~~~~~di~~~~~~~lp~~~~  618 (1002)
T 3swr_A          539 PKLRTLDVFSGCGGLSEGFHQAGISDTLWAIEMWDPAAQAFRLNNPGSTVFTEDCNILLKLVMAGETTNSRGQRLPQKGD  618 (1002)
T ss_dssp             CCEEEEEESCTTSHHHHHHHHHTSEEEEEEECSSHHHHHHHHHHCTTSEEECSCHHHHHHHHHHTCSBCTTCCBCCCTTT
T ss_pred             CCCeEEEeccCccHHHHHHHHCCCCceEEEEECCHHHHHHHHHhCCCCccccccHHHHhhhccchhhhhhhhhhcccCCC
Confidence            345789999999999999988886 4 6699999999886654 5677776665  110    0111110   12 2457


Q ss_pred             eeeEEEccccccC
Q 037961          100 VDLVTIASALHWF  112 (262)
Q Consensus       100 ~D~V~~~~~~~~~  112 (262)
                      +|+|+.....+-+
T Consensus       619 vDll~GGpPCQ~F  631 (1002)
T 3swr_A          619 VEMLCGGPPCQGF  631 (1002)
T ss_dssp             CSEEEECCCCTTC
T ss_pred             eeEEEEcCCCcch
Confidence            9999987766644

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=83.88  E-value=3.3  Score=44.75  Aligned_cols=98  Identities=17%  Similarity=0.092  Sum_probs=64.6

Q ss_pred             CCCCCeEEEEcC--cccHhHHHHHhh-CCeEEEEcCCHHHHHHHhc----CCCceEEeCCCCch-hhhhhccCCCCceee
Q 037961           31 TPKRNLAWDVGT--RSGQAAASLAQI-YQHVIATDTSPKQLKFAIK----LPNIRYQLTPTMSI-TELEQNVATQSSVDL  102 (262)
Q Consensus        31 ~~~~~~vlDvGc--G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~----~~~~~~~~~~~~~~-~~~~~~~~~~~~~D~  102 (262)
                      ++++.+||=.|+  |.|..+.++++. |++|++++.+++-.+.+++    .....+.......+ ..+.... ....+|+
T Consensus      1665 l~~Ge~VLI~gaaGgVG~aAiqlAk~~Ga~Viat~~s~~k~~~l~~~~~~lga~~v~~~~~~~~~~~i~~~t-~g~GvDv 1743 (2512)
T 2vz8_A         1665 MQPGESVLIHSGSGGVGQAAIAIALSRGCRVFTTVGSAEKRAYLQARFPQLDETCFANSRDTSFEQHVLRHT-AGKGVDL 1743 (2512)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCTTCCSTTEEESSSSHHHHHHHHTT-TSCCEEE
T ss_pred             CCCCCEEEEEeCChHHHHHHHHHHHHcCCEEEEEeCChhhhHHHHhhcCCCCceEEecCCCHHHHHHHHHhc-CCCCceE
Confidence            467889998864  458888888875 8999999999988887774    22222232221111 1111111 2346999


Q ss_pred             EEEccccccCChhHHHHHHHHhhcCCCeEEEEEe
Q 037961          103 VTIASALHWFDLPQFYKQVKWVLKKPSGVIAAWT  136 (262)
Q Consensus       103 V~~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~  136 (262)
                      |+-..+      ...++...+.|+ +||+++.+.
T Consensus      1744 Vld~~g------~~~l~~~l~~L~-~~Gr~V~iG 1770 (2512)
T 2vz8_A         1744 VLNSLA------EEKLQASVRCLA-QHGRFLEIG 1770 (2512)
T ss_dssp             EEECCC------HHHHHHHHTTEE-EEEEEEECC
T ss_pred             EEECCC------chHHHHHHHhcC-CCcEEEEee
Confidence            986432      467899999999 999998754

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=83.28  E-value=5.2  Score=31.62  Aligned_cols=92  Identities=10%  Similarity=-0.012  Sum_probs=56.4

Q ss_pred             CCCeEEEEcCcccHhHHHHHh----hCCeEEEEcCCHHHHHHHhcCCCceEEeCCCCchhhhhhccCCCCceeeEEEccc
Q 037961           33 KRNLAWDVGTRSGQAAASLAQ----IYQHVIATDTSPKQLKFAIKLPNIRYQLTPTMSITELEQNVATQSSVDLVTIASA  108 (262)
Q Consensus        33 ~~~~vlDvGcG~G~~~~~l~~----~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~  108 (262)
                      ..+.++=+|||  ..+..+++    .+. |+++|.+++.++.++  .++.++.+|..+....+...  -...|+|++...
T Consensus         8 ~~~~viI~G~G--~~G~~la~~L~~~g~-v~vid~~~~~~~~~~--~~~~~i~gd~~~~~~l~~a~--i~~ad~vi~~~~   80 (234)
T 2aef_A            8 KSRHVVICGWS--ESTLECLRELRGSEV-FVLAEDENVRKKVLR--SGANFVHGDPTRVSDLEKAN--VRGARAVIVDLE   80 (234)
T ss_dssp             --CEEEEESCC--HHHHHHHHHSTTSEE-EEEESCGGGHHHHHH--TTCEEEESCTTCHHHHHHTT--CTTCSEEEECCS
T ss_pred             CCCEEEEECCC--hHHHHHHHHHHhCCe-EEEEECCHHHHHHHh--cCCeEEEcCCCCHHHHHhcC--cchhcEEEEcCC
Confidence            34567888875  55555554    456 999999999888777  57888888732222233332  245788887533


Q ss_pred             cccCChhHHHHHHHHhhcCCCeEEEE
Q 037961          109 LHWFDLPQFYKQVKWVLKKPSGVIAA  134 (262)
Q Consensus       109 ~~~~d~~~~l~~~~r~Lk~pgG~l~i  134 (262)
                      -.  .....+....+-+. |+..++.
T Consensus        81 ~d--~~n~~~~~~a~~~~-~~~~iia  103 (234)
T 2aef_A           81 SD--SETIHCILGIRKID-ESVRIIA  103 (234)
T ss_dssp             CH--HHHHHHHHHHHHHC-SSSEEEE
T ss_pred             Cc--HHHHHHHHHHHHHC-CCCeEEE
Confidence            11  11224556677778 7766655

>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A*

Probab=83.00  E-value=8.2  Score=31.72  Aligned_cols=103  Identities=10%  Similarity=0.006  Sum_probs=61.6

Q ss_pred             CCCeEEEEcCccc-----HhHHHHHhhCCeEEEEcCCHHHHHHHhc----CCCceEEeCCCCchhhhhhc----cCCCCc
Q 037961           33 KRNLAWDVGTRSG-----QAAASLAQIYQHVIATDTSPKQLKFAIK----LPNIRYQLTPTMSITELEQN----VATQSS   99 (262)
Q Consensus        33 ~~~~vlDvGcG~G-----~~~~~l~~~~~~v~~vD~s~~~~~~a~~----~~~~~~~~~~~~~~~~~~~~----~~~~~~   99 (262)
                      .++++|=.|++.|     .++..|++.|++|+.++.++...+.+.+    ..++.++..|.-+..+++.+    .-.-+.
T Consensus        30 ~gk~~lVTGasg~~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~  109 (293)
T 3grk_A           30 QGKRGLILGVANNRSIAWGIAKAAREAGAELAFTYQGDALKKRVEPLAEELGAFVAGHCDVADAASIDAVFETLEKKWGK  109 (293)
T ss_dssp             TTCEEEEECCCSSSSHHHHHHHHHHHTTCEEEEEECSHHHHHHHHHHHHHHTCEEEEECCTTCHHHHHHHHHHHHHHTSC
T ss_pred             CCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCceEEECCCCCHHHHHHHHHHHHHhcCC
Confidence            4567888887633     3556677789999999999754443332    34677777772222222221    111257


Q ss_pred             eeeEEEcccccc----------CChh--------------HHHHHHHHhhcCCCeEEEEEe
Q 037961          100 VDLVTIASALHW----------FDLP--------------QFYKQVKWVLKKPSGVIAAWT  136 (262)
Q Consensus       100 ~D~V~~~~~~~~----------~d~~--------------~~l~~~~r~Lk~pgG~l~i~~  136 (262)
                      .|+++.+-++..          .+.+              .+.+.+.+.++ .+|.++...
T Consensus       110 iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~-~~g~Iv~is  169 (293)
T 3grk_A          110 LDFLVHAIGFSDKDELTGRYIDTSEANFTNTMLISVYSLTAVSRRAEKLMA-DGGSILTLT  169 (293)
T ss_dssp             CSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTT-TCEEEEEEE
T ss_pred             CCEEEECCccCCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCCEEEEEe
Confidence            899997665432          1222              14556777788 789888644

>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A

Probab=82.87  E-value=4.7  Score=32.43  Aligned_cols=103  Identities=14%  Similarity=0.151  Sum_probs=61.7

Q ss_pred             CCCeEEEEcCcccH---hHHHHHhhCCeEEEEcCCHHHHHHHhcC--CCceEEeCCCCchhhhhhcc----CCCCceeeE
Q 037961           33 KRNLAWDVGTRSGQ---AAASLAQIYQHVIATDTSPKQLKFAIKL--PNIRYQLTPTMSITELEQNV----ATQSSVDLV  103 (262)
Q Consensus        33 ~~~~vlDvGcG~G~---~~~~l~~~~~~v~~vD~s~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~----~~~~~~D~V  103 (262)
                      .++++|=.|++.|.   .+..|++.|++|+.+|.+++.++...+.  .++.++..|..+..+.+.+-    -.-+..|++
T Consensus         7 ~gk~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~l   86 (255)
T 4eso_A            7 QGKKAIVIGGTHGMGLATVRRLVEGGAEVLLTGRNESNIARIREEFGPRVHALRSDIADLNEIAVLGAAAGQTLGAIDLL   86 (255)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGEEEEECCTTCHHHHHHHHHHHHHHHSSEEEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCcceEEEccCCCHHHHHHHHHHHHHHhCCCCEE
Confidence            45678888877663   4556677899999999999887765432  45677777722222222110    112478999


Q ss_pred             EEccccccC------ChhH--------------HHHHHHHhhcCCCeEEEEEe
Q 037961          104 TIASALHWF------DLPQ--------------FYKQVKWVLKKPSGVIAAWT  136 (262)
Q Consensus       104 ~~~~~~~~~------d~~~--------------~l~~~~r~Lk~pgG~l~i~~  136 (262)
                      +.+-+....      +.+.              +.+.+...++ .+|.++...
T Consensus        87 v~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~-~~g~iv~is  138 (255)
T 4eso_A           87 HINAGVSELEPFDQVSEASYDRQFAVNTKGAFFTVQRLTPLIR-EGGSIVFTS  138 (255)
T ss_dssp             EECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEE-EEEEEEEEC
T ss_pred             EECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHh-cCCEEEEEC
Confidence            876554321      1111              3445566677 688877633

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=82.81  E-value=1  Score=39.01  Aligned_cols=99  Identities=16%  Similarity=0.136  Sum_probs=56.8

Q ss_pred             CCCeEEEEcCcc-cHhHHHHHh-hCCeEEEEcCCHHHHHHHhcCCCceEE--eCC-------------CCc-------hh
Q 037961           33 KRNLAWDVGTRS-GQAAASLAQ-IYQHVIATDTSPKQLKFAIKLPNIRYQ--LTP-------------TMS-------IT   88 (262)
Q Consensus        33 ~~~~vlDvGcG~-G~~~~~l~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~--~~~-------------~~~-------~~   88 (262)
                      ++.+|+=+|+|. |..+..++. .|++|+++|.++.-++.++.. +..+.  ..+             .++       ..
T Consensus       171 ~g~~V~ViGaG~iG~~aa~~a~~~Ga~V~~~d~~~~~~~~~~~~-Ga~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~~~  249 (384)
T 1l7d_A          171 PPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESL-GGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQAE  249 (384)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHHT-TCEECCC-----------------------CCHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc-CCeEEeecccccccccccccchhhcCHHHHhhhHH
Confidence            567899999985 655555554 488999999998877777653 22222  000             000       00


Q ss_pred             hhhhccCCCCceeeEEEccccccCChhH-HHHHHHHhhcCCCeEEEEEe
Q 037961           89 ELEQNVATQSSVDLVTIASALHWFDLPQ-FYKQVKWVLKKPSGVIAAWT  136 (262)
Q Consensus        89 ~~~~~~~~~~~~D~V~~~~~~~~~d~~~-~l~~~~r~Lk~pgG~l~i~~  136 (262)
                      .+...   -..+|+|+......-..... +.++..+.+| |||+++-..
T Consensus       250 ~l~~~---~~~aDvVi~~~~~pg~~~~~li~~~~l~~mk-~g~vivdva  294 (384)
T 1l7d_A          250 AVLKE---LVKTDIAITTALIPGKPAPVLITEEMVTKMK-PGSVIIDLA  294 (384)
T ss_dssp             HHHHH---HTTCSEEEECCCCTTSCCCCCSCHHHHTTSC-TTCEEEETT
T ss_pred             HHHHH---hCCCCEEEECCccCCCCCCeeeCHHHHhcCC-CCCEEEEEe
Confidence            12121   12489999543211111112 2367788899 999887644

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=82.78  E-value=7.9  Score=34.56  Aligned_cols=43  Identities=21%  Similarity=0.159  Sum_probs=33.1

Q ss_pred             CCCCeEEEEcCcc-cH-hHHHHHhhCCeEEEEcCCHHHHHHHhcC
Q 037961           32 PKRNLAWDVGTRS-GQ-AAASLAQIYQHVIATDTSPKQLKFAIKL   74 (262)
Q Consensus        32 ~~~~~vlDvGcG~-G~-~~~~l~~~~~~v~~vD~s~~~~~~a~~~   74 (262)
                      .....|.=+|+|. |. ++..|++.|.+|+++|.+++.++..++.
T Consensus         6 ~~~~~I~VIG~G~vG~~lA~~la~~G~~V~~~d~~~~~v~~l~~~   50 (478)
T 2y0c_A            6 HGSMNLTIIGSGSVGLVTGACLADIGHDVFCLDVDQAKIDILNNG   50 (478)
T ss_dssp             -CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHTT
T ss_pred             CCCceEEEECcCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHCC
Confidence            3456788899996 43 4556777899999999999999888753

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=82.57  E-value=12  Score=33.07  Aligned_cols=105  Identities=18%  Similarity=0.203  Sum_probs=59.4

Q ss_pred             CCeEEEEcCcc-cHh-HHHHHhhCCeEEEEcCCHHHHHHHhcCC-----------------CceEEeCCCCchhhhhhcc
Q 037961           34 RNLAWDVGTRS-GQA-AASLAQIYQHVIATDTSPKQLKFAIKLP-----------------NIRYQLTPTMSITELEQNV   94 (262)
Q Consensus        34 ~~~vlDvGcG~-G~~-~~~l~~~~~~v~~vD~s~~~~~~a~~~~-----------------~~~~~~~~~~~~~~~~~~~   94 (262)
                      .+.|-=+|+|. |.. +..|++ |.+|+++|++++.++..++..                 ++.+- .      +.++. 
T Consensus        36 ~mkIaVIGlG~mG~~lA~~La~-G~~V~~~D~~~~~v~~l~~g~~~i~e~~l~~ll~~~~~~l~~t-t------d~~ea-  106 (432)
T 3pid_A           36 FMKITISGTGYVGLSNGVLIAQ-NHEVVALDIVQAKVDMLNQKISPIVDKEIQEYLAEKPLNFRAT-T------DKHDA-  106 (432)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHT-TSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEE-S------CHHHH-
T ss_pred             CCEEEEECcCHHHHHHHHHHHc-CCeEEEEecCHHHhhHHhccCCccccccHHHHHhhccCCeEEE-c------CHHHH-
Confidence            34677888885 332 334455 899999999999998776521                 11111 0      11110 


Q ss_pred             CCCCceeeEEEcccccc------CC---hhHHHHHHHHhhcCCCeEEEEEecCCCcccHHHHHhhc
Q 037961           95 ATQSSVDLVTIASALHW------FD---LPQFYKQVKWVLKKPSGVIAAWTYTMPEINESVGAVFK  151 (262)
Q Consensus        95 ~~~~~~D~V~~~~~~~~------~d---~~~~l~~~~r~Lk~pgG~l~i~~~~~~~~~~~~~~~~~  151 (262)
                        -...|+|+.+-.-..      .|   ...+++.+.. |+ ||-+++.-+...+...+++.+.+.
T Consensus       107 --~~~aDvViiaVPt~~~~~~~~~Dl~~V~~v~~~i~~-l~-~g~iVV~~STv~pgtt~~l~~~l~  168 (432)
T 3pid_A          107 --YRNADYVIIATPTDYDPKTNYFNTSTVEAVIRDVTE-IN-PNAVMIIKSTIPVGFTRDIKERLG  168 (432)
T ss_dssp             --HTTCSEEEECCCCEEETTTTEEECHHHHHHHHHHHH-HC-TTSEEEECSCCCTTHHHHHHHHHT
T ss_pred             --HhCCCEEEEeCCCccccccccccHHHHHHHHHHHHh-cC-CCcEEEEeCCCChHHHHHHHHHHh
Confidence              124688886544331      12   3446778888 88 887766533333333445544443

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=82.23  E-value=5.4  Score=35.44  Aligned_cols=89  Identities=24%  Similarity=0.233  Sum_probs=54.8

Q ss_pred             CeEEEEcCcc-c-HhHHHHHhhCCeEEEEcCCHHHHHHHhcC--------------C-----Cc-eEEeCCCCchhhhhh
Q 037961           35 NLAWDVGTRS-G-QAAASLAQIYQHVIATDTSPKQLKFAIKL--------------P-----NI-RYQLTPTMSITELEQ   92 (262)
Q Consensus        35 ~~vlDvGcG~-G-~~~~~l~~~~~~v~~vD~s~~~~~~a~~~--------------~-----~~-~~~~~~~~~~~~~~~   92 (262)
                      ..|.=||+|. | ..+..++..|.+|+++|.+++.++.+++.              .     .. .....      +.+.
T Consensus        38 ~kV~VIGaG~MG~~iA~~la~~G~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~------~~~~  111 (463)
T 1zcj_A           38 SSVGVLGLGTMGRGIAISFARVGISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFSS------STKE  111 (463)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEEES------CGGG
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhhcC------CHHH
Confidence            5688999997 3 35566777899999999999888765431              0     00 01111      1211


Q ss_pred             ccCCCCceeeEEEccccccCChhHHHHHHHHhhcCCCeEEEE
Q 037961           93 NVATQSSVDLVTIASALHWFDLPQFYKQVKWVLKKPSGVIAA  134 (262)
Q Consensus        93 ~~~~~~~~D~V~~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i  134 (262)
                          -...|+|+.+-.-..--...+++++...++ |+.+|+.
T Consensus       112 ----~~~aDlVIeaVpe~~~~k~~v~~~l~~~~~-~~~ii~s  148 (463)
T 1zcj_A          112 ----LSTVDLVVEAVFEDMNLKKKVFAELSALCK-PGAFLCT  148 (463)
T ss_dssp             ----GTTCSEEEECCCSCHHHHHHHHHHHHHHSC-TTCEEEE
T ss_pred             ----HCCCCEEEEcCCCCHHHHHHHHHHHHhhCC-CCeEEEe
Confidence                134799987653110012457888888998 7766554

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=81.99  E-value=3.1  Score=34.50  Aligned_cols=37  Identities=19%  Similarity=0.121  Sum_probs=30.0

Q ss_pred             CeEEEEcCcc-cH-hHHHHHhhCCeEEEEcCCHHHHHHH
Q 037961           35 NLAWDVGTRS-GQ-AAASLAQIYQHVIATDTSPKQLKFA   71 (262)
Q Consensus        35 ~~vlDvGcG~-G~-~~~~l~~~~~~v~~vD~s~~~~~~a   71 (262)
                      .+|.=||+|. |. .+..++..|.+|+++|.+++.++.+
T Consensus        16 ~~I~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~   54 (302)
T 1f0y_A           16 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKS   54 (302)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHH
Confidence            5688899997 33 5666777899999999999988765

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=81.83  E-value=7.8  Score=34.28  Aligned_cols=115  Identities=17%  Similarity=0.147  Sum_probs=61.0

Q ss_pred             CCCeEEEEcCcc-cH-hHHHHHhhCCeEEEEcCCHHHHHHHhcCCCceEEeCC-----------CCch-hhhhhccCCCC
Q 037961           33 KRNLAWDVGTRS-GQ-AAASLAQIYQHVIATDTSPKQLKFAIKLPNIRYQLTP-----------TMSI-TELEQNVATQS   98 (262)
Q Consensus        33 ~~~~vlDvGcG~-G~-~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~-----------~~~~-~~~~~~~~~~~   98 (262)
                      ..-++-=+|+|. |. .+..|++.|.+|++.|.+++-++..++..+-.+..+-           .+.. .+..+.   -.
T Consensus         7 ~~~~~~vIGlG~vG~~~A~~La~~G~~V~~~D~~~~kv~~l~~g~~~~~epgl~~~~~~~~~~g~l~~ttd~~ea---~~   83 (446)
T 4a7p_A            7 GSVRIAMIGTGYVGLVSGACFSDFGHEVVCVDKDARKIELLHQNVMPIYEPGLDALVASNVKAGRLSFTTDLAEG---VK   83 (446)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHTTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHH---HT
T ss_pred             CceEEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHhcCCCCccCCCHHHHHHhhcccCCEEEECCHHHH---Hh
Confidence            334567788875 33 3445667799999999999998877653111111000           0000 011110   12


Q ss_pred             ceeeEEEcccccc------CC---hhHHHHHHHHhhcCCCeEEEEEecCCCcccHHHHHhhc
Q 037961           99 SVDLVTIASALHW------FD---LPQFYKQVKWVLKKPSGVIAAWTYTMPEINESVGAVFK  151 (262)
Q Consensus        99 ~~D~V~~~~~~~~------~d---~~~~l~~~~r~Lk~pgG~l~i~~~~~~~~~~~~~~~~~  151 (262)
                      ..|+|+.+-.-..      .|   ...+++.+...|+ +|-.++..+...+...+.+.+++.
T Consensus        84 ~aDvvii~Vptp~~~~~~~~Dl~~v~~v~~~i~~~l~-~g~iVV~~STv~pgtt~~l~~~l~  144 (446)
T 4a7p_A           84 DADAVFIAVGTPSRRGDGHADLSYVFAAAREIAENLT-KPSVIVTKSTVPVGTGDEVERIIA  144 (446)
T ss_dssp             TCSEEEECCCCCBCTTTCCBCTHHHHHHHHHHHHSCC-SCCEEEECSCCCTTHHHHHHHHHH
T ss_pred             cCCEEEEEcCCCCccccCCccHHHHHHHHHHHHHhcC-CCCEEEEeCCCCchHHHHHHHHHH
Confidence            3688886632221      12   4457788888898 776665533223333344444443

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}

Probab=81.57  E-value=5  Score=32.37  Aligned_cols=87  Identities=8%  Similarity=0.049  Sum_probs=53.6

Q ss_pred             CeEEEEcCcc-c-HhHHHHHhhCCe-EEEEcCCHHHHHHHhcCCCceEEeCCCCchhhhhhccCCCCceeeEEEcccccc
Q 037961           35 NLAWDVGTRS-G-QAAASLAQIYQH-VIATDTSPKQLKFAIKLPNIRYQLTPTMSITELEQNVATQSSVDLVTIASALHW  111 (262)
Q Consensus        35 ~~vlDvGcG~-G-~~~~~l~~~~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~~~  111 (262)
                      .+|.=+|||. | .++..+++.+.+ |.++|.+++.++.+.+.-++....       +.++.   -...|+|+..-.-. 
T Consensus        11 m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~~~~~~~~~~~~~~g~~~~~-------~~~~~---~~~~Dvvi~av~~~-   79 (266)
T 3d1l_A           11 TPIVLIGAGNLATNLAKALYRKGFRIVQVYSRTEESARELAQKVEAEYTT-------DLAEV---NPYAKLYIVSLKDS-   79 (266)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSHHHHHHHHHHTTCEEES-------CGGGS---CSCCSEEEECCCHH-
T ss_pred             CeEEEEcCCHHHHHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHcCCceeC-------CHHHH---hcCCCEEEEecCHH-
Confidence            4678899985 3 334456667887 899999999887665432344321       12221   12479999765433 


Q ss_pred             CChhHHHHHHHHhhcCCCeEEEE
Q 037961          112 FDLPQFYKQVKWVLKKPSGVIAA  134 (262)
Q Consensus       112 ~d~~~~l~~~~r~Lk~pgG~l~i  134 (262)
                       ....+++++...++ +|..++-
T Consensus        80 -~~~~v~~~l~~~~~-~~~ivv~  100 (266)
T 3d1l_A           80 -AFAELLQGIVEGKR-EEALMVH  100 (266)
T ss_dssp             -HHHHHHHHHHTTCC-TTCEEEE
T ss_pred             -HHHHHHHHHHhhcC-CCcEEEE
Confidence             22556677777777 6665544

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=81.52  E-value=4.4  Score=33.21  Aligned_cols=84  Identities=12%  Similarity=0.161  Sum_probs=53.1

Q ss_pred             CeEEEEcC-cc-c-HhHHHHHhhCCeEEEEcCCHHHHHHHhcCCCceEEeCCCCchhhhhhccCCCCceeeEEEcccccc
Q 037961           35 NLAWDVGT-RS-G-QAAASLAQIYQHVIATDTSPKQLKFAIKLPNIRYQLTPTMSITELEQNVATQSSVDLVTIASALHW  111 (262)
Q Consensus        35 ~~vlDvGc-G~-G-~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~~~  111 (262)
                      .+|.=||+ |. | .++..|+..+.+|+++|.+++.++.+.+. ++...  +      ..+.   -...|+|+..-.-..
T Consensus        12 m~I~iIG~tG~mG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~-g~~~~--~------~~~~---~~~aDvVi~av~~~~   79 (286)
T 3c24_A           12 KTVAILGAGGKMGARITRKIHDSAHHLAAIEIAPEGRDRLQGM-GIPLT--D------GDGW---IDEADVVVLALPDNI   79 (286)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHSSSEEEEECCSHHHHHHHHHT-TCCCC--C------SSGG---GGTCSEEEECSCHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHhc-CCCcC--C------HHHH---hcCCCEEEEcCCchH
Confidence            46888999 85 3 34556667788999999999888776653 22221  1      1111   124799987644332


Q ss_pred             CChhHHHHHHHHhhcCCCeEEE
Q 037961          112 FDLPQFYKQVKWVLKKPSGVIA  133 (262)
Q Consensus       112 ~d~~~~l~~~~r~Lk~pgG~l~  133 (262)
                        ...+++++...++ ||..++
T Consensus        80 --~~~v~~~l~~~l~-~~~ivv   98 (286)
T 3c24_A           80 --IEKVAEDIVPRVR-PGTIVL   98 (286)
T ss_dssp             --HHHHHHHHGGGSC-TTCEEE
T ss_pred             --HHHHHHHHHHhCC-CCCEEE
Confidence              4556777777777 666544

>2hwk_A Helicase NSP2; rossman fold, alpha/beta/alpha, multi-domain, hydrolase; 2.45A {Venezuelan equine encephalitis virus}

Probab=81.36  E-value=0.88  Score=37.73  Aligned_cols=91  Identities=12%  Similarity=0.103  Sum_probs=49.1

Q ss_pred             cCcccHhHHHHHh-hCCeEEEEcCCHHHHHHHhcCCCceEEeCC---CCc-hhhhhhccCCCCceeeEEEcccc----cc
Q 037961           41 GTRSGQAAASLAQ-IYQHVIATDTSPKQLKFAIKLPNIRYQLTP---TMS-ITELEQNVATQSSVDLVTIASAL----HW  111 (262)
Q Consensus        41 GcG~G~~~~~l~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~D~V~~~~~~----~~  111 (262)
                      .++.|.+...+.+ .|..|..||-.-..     ....++++.--   .+. ..|+.. |...+.+|+|++..+-    |+
T Consensus       149 ~~~~~~~~~~~~k~~g~~vl~v~~~~~~-----p~k~v~wi~Pi~GAt~~~~lDfg~-p~~~~k~DvV~SDMApn~sGh~  222 (320)
T 2hwk_A          149 EHPQSDFSSFVSKLKGRTVLVVGEKLSV-----PGKMVDWLSDRPEATFRARLDLGI-PGDVPKYDIIFVNVRTPYKYHH  222 (320)
T ss_dssp             CCCCCCCHHHHHTSSCSEEEEEESCCCC-----TTSEEEEEESSTTCSEECCGGGCS-CTTSCCEEEEEEECCCCCCSCH
T ss_pred             ccCCCCHHHHHhhCCCcEEEEEeccccc-----CCceeEeeccCCCceeecccccCC-ccccCcCCEEEEcCCCCCCCcc
Confidence            4566667766666 37777777532110     11223333210   000 012211 1123679999986554    44


Q ss_pred             ----CChhH----HHHHHHHhhcCCCeEEEEEecC
Q 037961          112 ----FDLPQ----FYKQVKWVLKKPSGVIAAWTYT  138 (262)
Q Consensus       112 ----~d~~~----~l~~~~r~Lk~pgG~l~i~~~~  138 (262)
                          .|...    ++..+.++|+ |||+|++-.+.
T Consensus       223 yqQC~DHarii~Lal~fA~~vLk-PGGtfV~Kvyg  256 (320)
T 2hwk_A          223 YQQCEDHAIKLSMLTKKACLHLN-PGGTCVSIGYG  256 (320)
T ss_dssp             HHHHHHHHHHHHHTHHHHGGGEE-EEEEEEEEECC
T ss_pred             ccccchHHHHHHHHHHHHHHhcC-CCceEEEEEec
Confidence                23222    5678889999 99999984444

>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0

Probab=81.30  E-value=5.2  Score=31.75  Aligned_cols=78  Identities=17%  Similarity=0.181  Sum_probs=50.0

Q ss_pred             CCCCeEEEEcCcccH---hHHHHHhhCCeEEEEcCCHHHHHHHhc--CCCceEEeCCCCchhhhhhccCCCCceeeEEEc
Q 037961           32 PKRNLAWDVGTRSGQ---AAASLAQIYQHVIATDTSPKQLKFAIK--LPNIRYQLTPTMSITELEQNVATQSSVDLVTIA  106 (262)
Q Consensus        32 ~~~~~vlDvGcG~G~---~~~~l~~~~~~v~~vD~s~~~~~~a~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~  106 (262)
                      .++.+||=.|++.|.   ++..|++.|++|+.++.++..++...+  ..++.+...|.-+..++...--.-+..|+++.+
T Consensus        12 ~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~id~li~~   91 (249)
T 3f9i_A           12 LTGKTSLITGASSGIGSAIARLLHKLGSKVIISGSNEEKLKSLGNALKDNYTIEVCNLANKEECSNLISKTSNLDILVCN   91 (249)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCSSEEEEECCTTSHHHHHHHHHTCSCCSEEEEC
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhccCccEEEcCCCCHHHHHHHHHhcCCCCEEEEC
Confidence            366788888877652   445566779999999999988776543  246777777722222333322123568999976


Q ss_pred             ccc
Q 037961          107 SAL  109 (262)
Q Consensus       107 ~~~  109 (262)
                      -+.
T Consensus        92 Ag~   94 (249)
T 3f9i_A           92 AGI   94 (249)
T ss_dssp             CC-
T ss_pred             CCC
Confidence            654

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=81.12  E-value=8  Score=31.74  Aligned_cols=97  Identities=15%  Similarity=0.148  Sum_probs=55.6

Q ss_pred             CeEEEEcCcc-c-HhHHHHHhhCCeEEEEcCCHHHHHHHhcCCCceEEeCC-----CCchhhhhhccCCCCceeeEEEcc
Q 037961           35 NLAWDVGTRS-G-QAAASLAQIYQHVIATDTSPKQLKFAIKLPNIRYQLTP-----TMSITELEQNVATQSSVDLVTIAS  107 (262)
Q Consensus        35 ~~vlDvGcG~-G-~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~D~V~~~~  107 (262)
                      .+|.=+|+|. | .++..|++.|.+|+++|.+++.++..++. ++......     .....+..+..-.-..+|+|+..-
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~v   82 (316)
T 2ew2_A            4 MKIAIAGAGAMGSRLGIMLHQGGNDVTLIDQWPAHIEAIRKN-GLIADFNGEEVVANLPIFSPEEIDHQNEQVDLIIALT   82 (316)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHH-CEEEEETTEEEEECCCEECGGGCCTTSCCCSEEEECS
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhC-CEEEEeCCCeeEecceeecchhhcccCCCCCEEEEEe
Confidence            3578899985 3 34455667789999999999888776543 22222100     000000111100012589998765


Q ss_pred             ccccCChhHHHHHHHHhhcCCCeEEEEE
Q 037961          108 ALHWFDLPQFYKQVKWVLKKPSGVIAAW  135 (262)
Q Consensus       108 ~~~~~d~~~~l~~~~r~Lk~pgG~l~i~  135 (262)
                      .-+  ....+++++...++ |+..++..
T Consensus        83 ~~~--~~~~v~~~l~~~l~-~~~~iv~~  107 (316)
T 2ew2_A           83 KAQ--QLDAMFKAIQPMIT-EKTYVLCL  107 (316)
T ss_dssp             CHH--HHHHHHHHHGGGCC-TTCEEEEC
T ss_pred             ccc--cHHHHHHHHHHhcC-CCCEEEEe
Confidence            432  34567778888888 77665543

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=80.35  E-value=7.9  Score=32.31  Aligned_cols=108  Identities=15%  Similarity=0.165  Sum_probs=62.5

Q ss_pred             CCCeEEEEcCcc-c-HhHHHHHhhCCeEEEEcCCHHHHHHHhcCCCceEEeCC-----CCc-hhhhhhccCCCCceeeEE
Q 037961           33 KRNLAWDVGTRS-G-QAAASLAQIYQHVIATDTSPKQLKFAIKLPNIRYQLTP-----TMS-ITELEQNVATQSSVDLVT  104 (262)
Q Consensus        33 ~~~~vlDvGcG~-G-~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~-----~~~-~~~~~~~~~~~~~~D~V~  104 (262)
                      ...+|.=+|+|. | .++..|++.|.+|+.+ .+++.++..++. ++.....+     ... ..+.+.    -..+|+|+
T Consensus        18 ~~~kI~IiGaGa~G~~~a~~L~~~G~~V~l~-~~~~~~~~i~~~-g~~~~~~~~~~~~~~~~~~~~~~----~~~~D~vi   91 (318)
T 3hwr_A           18 QGMKVAIMGAGAVGCYYGGMLARAGHEVILI-ARPQHVQAIEAT-GLRLETQSFDEQVKVSASSDPSA----VQGADLVL   91 (318)
T ss_dssp             --CEEEEESCSHHHHHHHHHHHHTTCEEEEE-CCHHHHHHHHHH-CEEEECSSCEEEECCEEESCGGG----GTTCSEEE
T ss_pred             cCCcEEEECcCHHHHHHHHHHHHCCCeEEEE-EcHhHHHHHHhC-CeEEEcCCCcEEEeeeeeCCHHH----cCCCCEEE
Confidence            456789999996 3 4556677789999999 898888776642 11111000     000 011211    14689998


Q ss_pred             EccccccCChhHHHHHHHHhhcCCCeEEEEEecCCCcccHHHHHhh
Q 037961          105 IASALHWFDLPQFYKQVKWVLKKPSGVIAAWTYTMPEINESVGAVF  150 (262)
Q Consensus       105 ~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~~~~~~~~~~~~~~  150 (262)
                      ..---+  +...+++++...++ |+..++....+-.. .+.+.+++
T Consensus        92 lavk~~--~~~~~l~~l~~~l~-~~~~iv~~~nGi~~-~~~l~~~~  133 (318)
T 3hwr_A           92 FCVKST--DTQSAALAMKPALA-KSALVLSLQNGVEN-ADTLRSLL  133 (318)
T ss_dssp             ECCCGG--GHHHHHHHHTTTSC-TTCEEEEECSSSSH-HHHHHHHC
T ss_pred             EEcccc--cHHHHHHHHHHhcC-CCCEEEEeCCCCCc-HHHHHHHc
Confidence            765443  56778888888888 77665544333222 23445555

>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*

Probab=80.19  E-value=12  Score=30.02  Aligned_cols=103  Identities=15%  Similarity=0.035  Sum_probs=60.0

Q ss_pred             CCCeEEEEcCc--cc--H-hHHHHHhhCCeEEEEcCCHHHHHHHhc----C--CCceEEeCCCCchhhhhhc----cCCC
Q 037961           33 KRNLAWDVGTR--SG--Q-AAASLAQIYQHVIATDTSPKQLKFAIK----L--PNIRYQLTPTMSITELEQN----VATQ   97 (262)
Q Consensus        33 ~~~~vlDvGcG--~G--~-~~~~l~~~~~~v~~vD~s~~~~~~a~~----~--~~~~~~~~~~~~~~~~~~~----~~~~   97 (262)
                      .++++|=.|++  .|  . ++..|++.|++|+.++.++...+.+.+    .  .++.++..|.-+..+++.+    .-..
T Consensus         6 ~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~   85 (266)
T 3oig_A            6 EGRNIVVMGVANKRSIAWGIARSLHEAGARLIFTYAGERLEKSVHELAGTLDRNDSIILPCDVTNDAEIETCFASIKEQV   85 (266)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHTSSSCCCEEEECCCSSSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEecCchHHHHHHHHHHHhcCCCCceEEeCCCCCHHHHHHHHHHHHHHh
Confidence            45678888876  33  2 556677789999999888754443332    2  2678888772111222221    1112


Q ss_pred             CceeeEEEcccccc----------CChhH--------------HHHHHHHhhcCCCeEEEEEe
Q 037961           98 SSVDLVTIASALHW----------FDLPQ--------------FYKQVKWVLKKPSGVIAAWT  136 (262)
Q Consensus        98 ~~~D~V~~~~~~~~----------~d~~~--------------~l~~~~r~Lk~pgG~l~i~~  136 (262)
                      +.+|+++.+-++..          .+.+.              +.+.+...++ ++|.++...
T Consensus        86 g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~g~iv~is  147 (266)
T 3oig_A           86 GVIHGIAHCIAFANKEELVGEYLNTNRDGFLLAHNISSYSLTAVVKAARPMMT-EGGSIVTLT  147 (266)
T ss_dssp             SCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCT-TCEEEEEEE
T ss_pred             CCeeEEEEccccccccccccchhhccHHHHHHHHHHhHHHHHHHHHHHHhhcC-CCceEEEEe
Confidence            46899887655432          12222              3456666777 789888644

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	262
d1xxla_	234	c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus	1e-07
d1vl5a_	231	c.66.1.41 (A:) Hypothetical protein BH2331 {Bacill	8e-05
d1yb2a1	250	c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {T	1e-04

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} Length = 234

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

 Score = 48.8 bits (115), Expect = 1e-07
 Identities = 34/210 (16%), Positives = 70/210 (33%), Gaps = 19/210 (9%)

Query: 39  DVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKLPNIRYQLTPTMSITELEQNVATQS 98
           D+G  +G  A + +   Q  I  D + + ++ A      +            E       
Sbjct: 22  DIGAGAGHTALAFSPYVQECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDD 81

Query: 99  SVDLVTIASALHWF-DLPQFYKQVKWVLKKPSGVIAAWTYTMPEINESVGAVFKPFDTID 157
           S D++T   A H F D+ +  ++V  VL K  G      +  PE +  +       +   
Sbjct: 82  SFDIITCRYAAHHFSDVRKAVREVARVL-KQDGRFLLVDHYAPE-DPVLDEFVNHLN--- 136

Query: 158 CNPFWAPQRKLVDKKYMSIDFPFEPVDGYENTGPFDQFVVEKM---MDLDDYFKFIRSCS 214
                    +L D  ++      E    +          ++K    +  D + K   + +
Sbjct: 137 ---------RLRDPSHVRESSLSEWQAMFSANQ-LAYQDIQKWNLPIQYDSWIKRGGTPA 186

Query: 215 AYQKAKDKGVELLTENVMEKFKAAWNEDGQ 244
             +K     +   ++   + F    N++GQ
Sbjct: 187 DREKQIITHLNHASDEARDTFCITLNQNGQ 216

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} Length = 231

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

 Score = 40.4 bits (93), Expect = 8e-05
 Identities = 24/121 (19%), Positives = 44/121 (36%), Gaps = 4/121 (3%)

Query: 22  ELFKLIASKTPKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQL-KFAIKLPNIRYQ 80
           +L ++ A K  +  L  DV T  G  A + A   + V+A D +   L      +    +Q
Sbjct: 6   KLMQIAALKGNEEVL--DVATGGGHVANAFAPFVKKVVAFDLTEDILKVARAFIEGNGHQ 63

Query: 81  LTPTMSITELEQNVATQSSVDLVTIASALHWFDLPQFYKQVKWVLKKPSGVIAAWTYTMP 140
               +     +     +    +    +A H+ +   F  +   VL K  G +     + P
Sbjct: 64  QVEYVQGDAEQMPFTDERFHIVTCRIAAHHFPNPASFVSEAYRVL-KKGGQLLLVDNSAP 122

Query: 141 E 141
           E
Sbjct: 123 E 123

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} Length = 250

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

 Score = 40.4 bits (94), Expect = 1e-04
 Identities = 16/134 (11%), Positives = 40/134 (29%), Gaps = 9/134 (6%)

Query: 19  YPKELFKLIASKTPKRNL-AWDVGTRSGQAAASLAQIYQ---HVIATDTSPKQLKFAIKL 74
              +   +I     +  +   +VG  SG  ++ +         +   +     LK A+  
Sbjct: 70  SEIDASYIIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDN 129

Query: 75  PNIRYQLTPTMSITELEQNVATQSSVDLVTIASALHWFDLPQFYKQVKWVLKKPSGVIAA 134
            +  Y +    +      +  +    D V       W  + +    +     KP  V   
Sbjct: 130 LSEFYDIGNVRTSRSDIADFISDQMYDAVIADIPDPWNHVQKIASMM-----KPGSVATF 184

Query: 135 WTYTMPEINESVGA 148
           +     +  ++V +
Sbjct: 185 YLPNFDQSEKTVLS 198

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	262
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	99.94
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	99.93
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	99.88
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	99.86
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	99.86
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	99.85
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	99.85
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	99.81
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	99.8
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	99.8
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	99.79
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	99.77
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	99.76
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	99.75
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	99.75
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	99.74
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	99.73
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	99.73
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	99.73
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	99.69
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	99.68
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	99.65
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	99.65
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	99.65
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	99.65
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	99.65
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	99.64
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	99.63
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	99.61
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	99.61
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	99.57
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	99.56
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	99.55
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	99.54
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	99.54
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	99.53
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	99.53
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	99.5
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	99.47
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	99.46
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	99.46
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	99.45
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	99.45
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	99.43
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	99.43
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	99.4
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	99.4
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	99.4
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	99.37
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	99.35
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	99.3
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	99.3
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	99.29
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	99.24
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	99.24
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	99.22
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	99.21
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	99.19
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	99.18
d1af7a2	193	Chemotaxis receptor methyltransferase CheR, C-term	99.16
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	99.15
d2fpoa1	183	Methylase YhhF {Escherichia coli [TaxId: 562]}	99.13
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	99.12
d1fp1d2	244	Chalcone O-methyltransferase {Alfalfa (Medicago sa	99.1
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	99.07
d2fhpa1	182	Putative methylase EF2452 {Enterococcus faecalis [	99.03
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	98.98
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	98.96
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	98.93
d1fp2a2	244	Isoflavone O-methyltransferase {Alfalfa (Medicago	98.89
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	98.88
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	98.86
d1qama_	235	rRNA adenine dimethylase {Bacillus subtilis, Ermc'	98.81
d1kyza2	243	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	98.81
d1wg8a2	182	TM0872, methyltransferase domain {Thermus thermoph	98.8
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	98.8
d2h00a1	250	Methyltransferase 10 domain containing protein MET	98.78
d2ifta1	183	Putative methylase HI0767 {Haemophilus influenzae	98.78
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	98.76
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	98.76
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	98.75
d1nv8a_	271	N5-glutamine methyltransferase, HemK {Thermotoga m	98.71
d1yuba_	245	rRNA adenine dimethylase {Streptococcus pneumoniae	98.71
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	98.7
d1ej0a_	180	RNA methyltransferase FtsJ {Escherichia coli [TaxI	98.59
d1uwva2	358	rRNA (Uracil-5-)-methyltransferase RumA, catalytic	98.57
d2ih2a1	223	DNA methylase TaqI, N-terminal domain {Thermus aqu	98.57
d2f8la1	328	Hypothetical protein Lmo1582 {Listeria monocytogen	98.5
d1qyra_	252	High level kasugamycin resistance protein KsgA {Es	98.37
d1zq9a1	278	Probable dimethyladenosine transferase {Human (Hom	98.29
d2bm8a1	232	Cephalosporin hydroxylase CmcI {Streptomyces clavu	98.2
d1jsxa_	207	Glucose-inhibited division protein B (GidB) {Esche	98.17
d2okca1	425	Type I restriction enzyme StySJI M protein {Bacter	98.02
d2p41a1	257	An RNA cap (nucleoside-2'-O-)-methyltransferase do	97.99
d1xdza_	239	Glucose-inhibited division protein B (GidB) {Bacil	97.87
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	97.82
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	97.78
d2ar0a1	524	M.EcoKI {Escherichia coli [TaxId: 562]}	97.76
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	97.72
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	97.72
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	97.7
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	97.65
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	97.59
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	97.58
d1ixka_	313	Hypothetical methyltransferase PH1374 {Archaeon Py	97.57
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	97.47
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	97.38
d1sqga2	284	Ribosomal RNA small subunit methyltransferase B, R	97.37
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	97.29
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	97.28
d2oyra1	250	Hypothetical protein YhiQ {Shigella flexneri [TaxI	97.18
d2dula1	375	N(2),N(2)-dimethylguanosine tRNA methyltransferase	97.13
d1i4wa_	322	Transcription factor sc-mtTFB {Baker's yeast (Sacc	97.1
d1booa_	320	m.PvuII N4 cytosine-specific DNA methyltransferase	97.03
d2b9ea1	293	NOL1R {Human (Homo sapiens) [TaxId: 9606]}	97.01
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	96.95
d1g60a_	256	Methyltransferase mboII {Moraxella bovis [TaxId: 4	96.88
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	96.84
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	96.78
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	96.69
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	96.69
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	96.66
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	96.56
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	96.55
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	96.05
d1m6ex_	359	Salicylic acid carboxyl methyltransferase (SAMT) {	95.98
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	95.97
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	95.55
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	95.54
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	95.52
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	95.3
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	94.64
d1tt7a2	167	Hypothetical protein YhfP {Bacillus subtilis [TaxI	94.58
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	94.54
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	94.08
d1o89a2	177	Hypothetical protein YhdH {Escherichia coli [TaxId	94.07
d1dcta_	324	DNA methylase HaeIII {Haemophilus aegyptius [TaxId	94.02
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	93.97
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	93.21
d1g55a_	343	DNMT2 {Human (Homo sapiens) [TaxId: 9606]}	93.01
d1gu7a2	189	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	92.01
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	91.41
d2c7pa1	327	DNA methylase HhaI {Haemophilus haemolyticus [TaxI	91.16
d1vj1a2	187	Putative zinc-binding alcohol dehydrogenase {Mouse	90.84
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	90.2
d2ag5a1	245	Dehydrogenase/reductase SDR family member 6, DHRS6	89.9
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	89.58
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	89.57
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	89.45
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	88.66
d1g60a_	256	Methyltransferase mboII {Moraxella bovis [TaxId: 4	87.77
d1zkda1	365	Hypothetical protein RPA4359 {Rhodopseudomonas pal	87.51
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	86.14
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	85.51
d2py6a1	395	Methyltransferase FkbM {Methylobacillus flagellatu	84.13
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	83.98
d2uyoa1	297	Putative methyltransferase ML2640 {Mycobacterium l	83.35
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	82.09
d1booa_	320	m.PvuII N4 cytosine-specific DNA methyltransferase	81.91
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	80.3

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=99.94  E-value=2.4e-26  Score=187.84  Aligned_cols=210  Identities=20%  Similarity=0.178  Sum_probs=134.7

Q ss_pred             hCCCCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhc------CCCceEEeCCCCchhhhhhccCCCCceeeE
Q 037961           30 KTPKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIK------LPNIRYQLTPTMSITELEQNVATQSSVDLV  103 (262)
Q Consensus        30 ~~~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~D~V  103 (262)
                      .++++.+|||||||+|.++..+++.+++|+|+|+|+.|++.|++      .+++++.+++      ++++++++++||+|
T Consensus        12 ~l~~~~rVLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d------~~~l~~~~~~fD~v   85 (231)
T d1vl5a_          12 ALKGNEEVLDVATGGGHVANAFAPFVKKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGD------AEQMPFTDERFHIV   85 (231)
T ss_dssp             TCCSCCEEEEETCTTCHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECC------C-CCCSCTTCEEEE
T ss_pred             CCCCcCEEEEecccCcHHHHHHHHhCCEEEEEECCHHHHhhhhhcccccccccccccccc------cccccccccccccc
Confidence            34678899999999999999999999999999999999999874      3678888765      67788889999999


Q ss_pred             EEccccccC-ChhHHHHHHHHhhcCCCeEEEEEecCCCc--ccHHHHHhhcccccCCCCCCccccchhHHhcCCCCCCCC
Q 037961          104 TIASALHWF-DLPQFYKQVKWVLKKPSGVIAAWTYTMPE--INESVGAVFKPFDTIDCNPFWAPQRKLVDKKYMSIDFPF  180 (262)
Q Consensus       104 ~~~~~~~~~-d~~~~l~~~~r~Lk~pgG~l~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f  180 (262)
                      +|..++||+ |+.++++++.++|| |||.|++..+..+.  ..+.+...+...........+.+  ..+...+.+.|  |
T Consensus        86 ~~~~~l~~~~d~~~~l~~~~r~Lk-pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~aG--f  160 (231)
T d1vl5a_          86 TCRIAAHHFPNPASFVSEAYRVLK-KGGQLLLVDNSAPENDAFDVFYNYVEKERDYSHHRAWKK--SDWLKMLEEAG--F  160 (231)
T ss_dssp             EEESCGGGCSCHHHHHHHHHHHEE-EEEEEEEEEEEBCSSHHHHHHHHHHHHHHCTTCCCCCBH--HHHHHHHHHHT--C
T ss_pred             cccccccccCCHHHHHHHHHHhcC-CCcEEEEEeCCCCCCHHHHHHHHHHHhhcccCcccCCCH--HHHHHHHHHCC--C
Confidence            999999999 99999999999999 99999985443322  11222222222221111122221  11223333334  3


Q ss_pred             CCCCCCCCCCCCcceeEeEeecHHHHHHHHhhhhHHHHH-HHhCCccchHHHHHHHHHHhccCCCCeEEEEEeEEEEEEE
Q 037961          181 EPVDGYENTGPFDQFVVEKMMDLDDYFKFIRSCSAYQKA-KDKGVELLTENVMEKFKAAWNEDGQSQKIARFRVYLRIGK  259 (262)
Q Consensus       181 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~~~~~-~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r  259 (262)
                      +.++         ..........+.+...+.+....... .+.... ...++.+.+..... ++ ......+.++++.||
T Consensus       161 ~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-d~-~~~~~~~~~~~~~ar  228 (231)
T d1vl5a_         161 ELEE---------LHCFHKTFIFEDWCDRMNVTTEKKQELSDFIKS-KPTEYYQKFKIVVE-DG-RVYSFRGESILMKAR  228 (231)
T ss_dssp             EEEE---------EEEEEEEEEHHHHHHHTTCCHHHHHHHHHHHHT-SCHHHHHHTTCEEE-TT-EEEEEEEEEEEEEEE
T ss_pred             EEEE---------EEEeecCCchHHHHHHhcCCHHHHHHHHHHHHh-hHHHHHHHHHHHhh-cC-CccceeeeEEEEEEE
Confidence            3222         22335566777777776654432221 111111 11223333332222 22 245677889999999


Q ss_pred             eCC
Q 037961          260 VGN  262 (262)
Q Consensus       260 k~~  262 (262)
                      ||+
T Consensus       229 KP~  231 (231)
T d1vl5a_         229 KPT  231 (231)
T ss_dssp             CCC
T ss_pred             cCC
Confidence            985

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=99.93  E-value=1.5e-25  Score=183.75  Aligned_cols=217  Identities=16%  Similarity=0.191  Sum_probs=137.8

Q ss_pred             HHHHHhh--CCCCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhcC------CCceEEeCCCCchhhhhhccC
Q 037961           24 FKLIASK--TPKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKL------PNIRYQLTPTMSITELEQNVA   95 (262)
Q Consensus        24 ~~~l~~~--~~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~~~~~~~   95 (262)
                      .+.+.+.  ++++.+|||+|||+|.++..+++++.+|+|+|+|+.|++.|+++      +++.+++++      ++++++
T Consensus         5 ~~~l~~~~~~~~~~rILDiGcGtG~~~~~la~~~~~v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~d------~~~~~~   78 (234)
T d1xxla_           5 LGLMIKTAECRAEHRVLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVASSFAQEKGVENVRFQQGT------AESLPF   78 (234)
T ss_dssp             HHHHHHHHTCCTTCEEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECB------TTBCCS
T ss_pred             HHHHHHHhCCCCCCEEEEeCCcCcHHHHHHHHhCCeEEEEeCChhhhhhhhhhhcccccccccccccc------cccccc
Confidence            3445444  36899999999999999999999999999999999999998753      578888764      777888


Q ss_pred             CCCceeeEEEccccccC-ChhHHHHHHHHhhcCCCeEEEEEecCCCcccHHHHHhhcc---cccCCCCCCccccchhHHh
Q 037961           96 TQSSVDLVTIASALHWF-DLPQFYKQVKWVLKKPSGVIAAWTYTMPEINESVGAVFKP---FDTIDCNPFWAPQRKLVDK  171 (262)
Q Consensus        96 ~~~~~D~V~~~~~~~~~-d~~~~l~~~~r~Lk~pgG~l~i~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~  171 (262)
                      ++++||+|+|..++||+ |+.++++++.|+|| |||.+++..+..+. .+.++.++..   +..........  ...+.+
T Consensus        79 ~~~~fD~v~~~~~l~~~~d~~~~l~~~~r~Lk-pgG~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~  154 (234)
T d1xxla_          79 PDDSFDIITCRYAAHHFSDVRKAVREVARVLK-QDGRFLLVDHYAPE-DPVLDEFVNHLNRLRDPSHVRESS--LSEWQA  154 (234)
T ss_dssp             CTTCEEEEEEESCGGGCSCHHHHHHHHHHHEE-EEEEEEEEEECBCS-SHHHHHHHHHHHHHHCTTCCCCCB--HHHHHH
T ss_pred             cccccceeeeeceeecccCHHHHHHHHHHeeC-CCcEEEEEEcCCCC-CHHHHHHHHHHHhhCCCcccccCC--HHHHHH
Confidence            99999999999999999 99999999999999 99999884433222 1222333222   22111111111  111223


Q ss_pred             cCCCCCCCCCCCCCCCCCCCCcceeEeEeecHHHHHHHHhhhhHHHHHHHhCCccchHHHHHHHHHHhccCCCCeEEEEE
Q 037961          172 KYMSIDFPFEPVDGYENTGPFDQFVVEKMMDLDDYFKFIRSCSAYQKAKDKGVELLTENVMEKFKAAWNEDGQSQKIARF  251 (262)
Q Consensus       172 ~~~~~~~~f~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~  251 (262)
                      .+...+|....           ...+....++..++..+.+................++..+.+...+...+ ..+...+
T Consensus       155 ~~~~~gf~~~~-----------~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~-~~~sf~~  222 (234)
T d1xxla_         155 MFSANQLAYQD-----------IQKWNLPIQYDSWIKRGGTPADREKQIITHLNHASDEARDTFCITLNQNG-QPISFCL  222 (234)
T ss_dssp             HHHHTTEEEEE-----------EEEEEEEEEHHHHHHHHTCCHHHHHHHHHHHHTCCHHHHHHTTCEECTTS-CEEEEEE
T ss_pred             HHHHCCCceeE-----------EEEeeCccCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC-Ccccchh
Confidence            33333321111           22344555667766665543333222111111122224444443344433 3566788


Q ss_pred             eEEEEEEEeCC
Q 037961          252 RVYLRIGKVGN  262 (262)
Q Consensus       252 ~~~~~~~rk~~  262 (262)
                      ...++.|+|++
T Consensus       223 ~~ili~a~Kr~  233 (234)
T d1xxla_         223 KAILIQGIKRE  233 (234)
T ss_dssp             EEEEEEEEECB
T ss_pred             hhhheEEeCCC
Confidence            99999999874

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=99.88  E-value=1.7e-22  Score=165.79  Aligned_cols=127  Identities=17%  Similarity=0.168  Sum_probs=103.4

Q ss_pred             hhhHHHHHHHHhhCCCC----hHHHHHH-HHhhCCCCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhcCCCc
Q 037961            3 ELFIKQANLYAVARPNY----PKELFKL-IASKTPKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKLPNI   77 (262)
Q Consensus         3 ~~F~~~a~~Y~~~rp~y----p~~~~~~-l~~~~~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~   77 (262)
                      +.|++.|+.|++.....    ..+.+.. +..+.+++.+|||+|||+|.++..+++.+.+|+|+|+|+.|++.|++....
T Consensus         7 ~~yd~~a~~Yd~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~l~~a~~~~~~   86 (246)
T d2avna1           7 EFYDRIARAYDSMYETPKWKLYHRLIGSFLEEYLKNPCRVLDLGGGTGKWSLFLQERGFEVVLVDPSKEMLEVAREKGVK   86 (246)
T ss_dssp             HHHHHHHHHHGGGGCSHHHHHHHHHHHHHHHHHCCSCCEEEEETCTTCHHHHHHHTTTCEEEEEESCHHHHHHHHHHTCS
T ss_pred             HHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcCCCCEEEEECCCCchhcccccccceEEEEeeccccccccccccccc
Confidence            56899999998754432    2233333 444567888999999999999999999999999999999999999975444


Q ss_pred             eEEeCCCCchhhhhhccCCCCceeeEEEc-cccccC-ChhHHHHHHHHhhcCCCeEEEEEe
Q 037961           78 RYQLTPTMSITELEQNVATQSSVDLVTIA-SALHWF-DLPQFYKQVKWVLKKPSGVIAAWT  136 (262)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~D~V~~~-~~~~~~-d~~~~l~~~~r~Lk~pgG~l~i~~  136 (262)
                      .++.+      +++++++++++||+|++. .++||+ |+.++++++.|+|| |||.+++..
T Consensus        87 ~~~~~------~~~~l~~~~~~fD~ii~~~~~~~~~~d~~~~l~~i~r~Lk-~gG~~ii~~  140 (246)
T d2avna1          87 NVVEA------KAEDLPFPSGAFEAVLALGDVLSYVENKDKAFSEIRRVLV-PDGLLIATV  140 (246)
T ss_dssp             CEEEC------CTTSCCSCTTCEEEEEECSSHHHHCSCHHHHHHHHHHHEE-EEEEEEEEE
T ss_pred             ccccc------cccccccccccccceeeecchhhhhhhHHHHHHHHHhhcC-cCcEEEEEE
Confidence            45554      477788889999999985 678999 99999999999999 999999854

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=99.86  E-value=9.9e-22  Score=157.74  Aligned_cols=126  Identities=16%  Similarity=0.143  Sum_probs=101.8

Q ss_pred             ChhhhHHHHHHHHhhCCCChHHH---HHHHHhhCCCCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhcCCCc
Q 037961            1 MAELFIKQANLYAVARPNYPKEL---FKLIASKTPKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKLPNI   77 (262)
Q Consensus         1 ~~~~F~~~a~~Y~~~rp~yp~~~---~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~   77 (262)
                      |-+.|++.|..|+++....+...   .+.+... .+..+|||||||+|.++..+    .+++|+|+|+.|++.|++. ++
T Consensus         2 ~~~~f~~~a~~Yd~w~~~~~~~~~~~~~~~~~~-~~~~~vLDiGcG~G~~~~~~----~~~~giD~s~~~~~~a~~~-~~   75 (208)
T d1vlma_           2 MWHIFERFVNEYERWFLVHRFAYLSELQAVKCL-LPEGRGVEIGVGTGRFAVPL----KIKIGVEPSERMAEIARKR-GV   75 (208)
T ss_dssp             TTHHHHHTHHHHHHHHHHTHHHHHHHHHHHHHH-CCSSCEEEETCTTSTTHHHH----TCCEEEESCHHHHHHHHHT-TC
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhh-CCCCeEEEECCCCccccccc----ceEEEEeCChhhccccccc-cc
Confidence            67899999999998532222222   2333333 44567899999999998777    4579999999999999875 68


Q ss_pred             eEEeCCCCchhhhhhccCCCCceeeEEEccccccC-ChhHHHHHHHHhhcCCCeEEEEEecCC
Q 037961           78 RYQLTPTMSITELEQNVATQSSVDLVTIASALHWF-DLPQFYKQVKWVLKKPSGVIAAWTYTM  139 (262)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~~~~-d~~~~l~~~~r~Lk~pgG~l~i~~~~~  139 (262)
                      .+.+++      ++++++++++||+|++..++||+ |+.++++++.++|+ |||.+++.....
T Consensus        76 ~~~~~d------~~~l~~~~~~fD~I~~~~~l~h~~d~~~~l~~~~~~L~-pgG~l~i~~~~~  131 (208)
T d1vlma_          76 FVLKGT------AENLPLKDESFDFALMVTTICFVDDPERALKEAYRILK-KGGYLIVGIVDR  131 (208)
T ss_dssp             EEEECB------TTBCCSCTTCEEEEEEESCGGGSSCHHHHHHHHHHHEE-EEEEEEEEEECS
T ss_pred             cccccc------ccccccccccccccccccccccccccccchhhhhhcCC-CCceEEEEecCC
Confidence            888764      77788889999999999999999 99999999999999 999999866544

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=99.86  E-value=2.7e-21  Score=162.46  Aligned_cols=98  Identities=22%  Similarity=0.235  Sum_probs=88.3

Q ss_pred             CCCCeEEEEcCcccHhHHHHHhh-CCeEEEEcCCHHHHHHHhcC-------CCceEEeCCCCchhhhhhccCCCCceeeE
Q 037961           32 PKRNLAWDVGTRSGQAAASLAQI-YQHVIATDTSPKQLKFAIKL-------PNIRYQLTPTMSITELEQNVATQSSVDLV  103 (262)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~D~V  103 (262)
                      +++.+|||||||+|.++..|+++ +++|+|+|+|+.|++.|+++       .++++..++      ++++|+++++||+|
T Consensus        66 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d------~~~l~~~~~sfD~V  139 (282)
T d2o57a1          66 QRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGS------FLEIPCEDNSYDFI  139 (282)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECC------TTSCSSCTTCEEEE
T ss_pred             CCCCEEEEeCCCCcHHHhhhhccCCcEEEEEeccchhhhhhhcccccccccccccccccc------cccccccccccchh
Confidence            58899999999999999999886 78999999999999988853       478888764      77788899999999


Q ss_pred             EEccccccC-ChhHHHHHHHHhhcCCCeEEEEEe
Q 037961          104 TIASALHWF-DLPQFYKQVKWVLKKPSGVIAAWT  136 (262)
Q Consensus       104 ~~~~~~~~~-d~~~~l~~~~r~Lk~pgG~l~i~~  136 (262)
                      ++..++||+ |+.++++++.++|| |||+|++..
T Consensus       140 ~~~~~l~h~~d~~~~l~~~~~~Lk-pgG~l~~~~  172 (282)
T d2o57a1         140 WSQDAFLHSPDKLKVFQECARVLK-PRGVMAITD  172 (282)
T ss_dssp             EEESCGGGCSCHHHHHHHHHHHEE-EEEEEEEEE
T ss_pred             hccchhhhccCHHHHHHHHHHhcC-CCcEEEEEE
Confidence            999999999 99999999999999 999999844

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=99.85  E-value=6.1e-21  Score=157.06  Aligned_cols=120  Identities=13%  Similarity=0.116  Sum_probs=98.2

Q ss_pred             HHHHHhhCCCChHHHHHHHHhhC--CCCCeEEEEcCcccHhHHHHHhh-CCeEEEEcCCHHHHHHHhcC-------CCce
Q 037961            9 ANLYAVARPNYPKELFKLIASKT--PKRNLAWDVGTRSGQAAASLAQI-YQHVIATDTSPKQLKFAIKL-------PNIR   78 (262)
Q Consensus         9 a~~Y~~~rp~yp~~~~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~-------~~~~   78 (262)
                      .+.+....| +.++.++.|....  .++.+|||||||+|..+..+++. +.+|+|+|+|+.|++.|++.       .+++
T Consensus         8 ~~~h~~~~p-~~~~~~~~l~~~~~l~pg~~VLDiGCG~G~~~~~la~~~~~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~   86 (245)
T d1nkva_           8 ESEHRIHNP-FTEEKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVH   86 (245)
T ss_dssp             TSSCSSSSS-CCHHHHHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEE
T ss_pred             hhhccccCC-CCHHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHhcCCEEEEEecccchhhHHHHHHHHhhccccch
Confidence            333444455 4566677777774  58899999999999999999876 78999999999999988753       4588


Q ss_pred             EEeCCCCchhhhhhccCCCCceeeEEEccccccC-ChhHHHHHHHHhhcCCCeEEEEEec
Q 037961           79 YQLTPTMSITELEQNVATQSSVDLVTIASALHWF-DLPQFYKQVKWVLKKPSGVIAAWTY  137 (262)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~~~~-d~~~~l~~~~r~Lk~pgG~l~i~~~  137 (262)
                      +..++      ++++ .++++||+|+|..+++|+ |+.++++++.|+|| |||++++...
T Consensus        87 ~~~~d------~~~~-~~~~~fD~v~~~~~~~~~~d~~~~l~~~~r~Lk-PGG~l~i~~~  138 (245)
T d1nkva_          87 FIHND------AAGY-VANEKCDVAACVGATWIAGGFAGAEELLAQSLK-PGGIMLIGEP  138 (245)
T ss_dssp             EEESC------CTTC-CCSSCEEEEEEESCGGGTSSSHHHHHHHTTSEE-EEEEEEEEEE
T ss_pred             hhhhH------Hhhc-cccCceeEEEEEehhhccCCHHHHHHHHHHHcC-cCcEEEEEec
Confidence            88765      5555 367899999999999999 99999999999999 9999998543

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.85  E-value=2.8e-21  Score=156.44  Aligned_cols=104  Identities=23%  Similarity=0.335  Sum_probs=89.9

Q ss_pred             HHHhhCCCCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhcC-----CCceEEeCCCCchhhhhhccCCCCce
Q 037961           26 LIASKTPKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKL-----PNIRYQLTPTMSITELEQNVATQSSV  100 (262)
Q Consensus        26 ~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (262)
                      .+..++++..+|||||||+|..+..+++.+.+|+|+|+|+.|++.|++.     ..+.++.+      |++++++++++|
T Consensus        30 ~~~~~l~~~~~ILDiGcG~G~~~~~la~~~~~v~giD~S~~~i~~ak~~~~~~~~~~~~~~~------d~~~l~~~~~~f  103 (226)
T d1ve3a1          30 LLMKYMKKRGKVLDLACGVGGFSFLLEDYGFEVVGVDISEDMIRKAREYAKSRESNVEFIVG------DARKLSFEDKTF  103 (226)
T ss_dssp             HHHHSCCSCCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCCEEEEC------CTTSCCSCTTCE
T ss_pred             HHHHhcCCCCEEEEECCCcchhhhhHhhhhcccccccccccchhhhhhhhcccccccccccc------ccccccccCcCc
Confidence            3445678889999999999999999999999999999999999999752     45666654      477788899999


Q ss_pred             eeEEEccccccC---ChhHHHHHHHHhhcCCCeEEEEEe
Q 037961          101 DLVTIASALHWF---DLPQFYKQVKWVLKKPSGVIAAWT  136 (262)
Q Consensus       101 D~V~~~~~~~~~---d~~~~l~~~~r~Lk~pgG~l~i~~  136 (262)
                      |+|++..++||+   |+.++++++.++|| |||.|++..
T Consensus       104 D~I~~~~~l~~~~~~d~~~~l~~i~~~Lk-pgG~lii~~  141 (226)
T d1ve3a1         104 DYVIFIDSIVHFEPLELNQVFKEVRRVLK-PSGKFIMYF  141 (226)
T ss_dssp             EEEEEESCGGGCCHHHHHHHHHHHHHHEE-EEEEEEEEE
T ss_pred             eEEEEecchhhCChhHHHHHHHHHHHHcC-cCcEEEEEE
Confidence            999999999998   45669999999999 999998844

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=99.81  E-value=7.9e-20  Score=148.41  Aligned_cols=123  Identities=15%  Similarity=0.226  Sum_probs=94.0

Q ss_pred             HHHHHHH----hhCCCChH---HHHHHHHhhCCCCCeEEEEcCcccHhHHHHHhh----CCeEEEEcCCHHHHHHHhcC-
Q 037961            7 KQANLYA----VARPNYPK---ELFKLIASKTPKRNLAWDVGTRSGQAAASLAQI----YQHVIATDTSPKQLKFAIKL-   74 (262)
Q Consensus         7 ~~a~~Y~----~~rp~yp~---~~~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~----~~~v~~vD~s~~~~~~a~~~-   74 (262)
                      ..|+.|+    +..|.|..   .+...+..+.+++.+|||||||+|..+..+++.    +.+|+|+|+|+.|++.|++. 
T Consensus         6 ~~a~~fdd~i~~~iP~Y~~~~~~i~~~~~~~~~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~   85 (225)
T d1im8a_           6 NVAEVFPDMIQRSVPGYSNIITAIGMLAERFVTADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHI   85 (225)
T ss_dssp             HHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHCCTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHh
Confidence            4566665    35588864   223444556788999999999999999999863    67999999999999999852 


Q ss_pred             ------CCceEEeCCCCchhhhhhccCCCCceeeEEEccccccC---ChhHHHHHHHHhhcCCCeEEEEEecC
Q 037961           75 ------PNIRYQLTPTMSITELEQNVATQSSVDLVTIASALHWF---DLPQFYKQVKWVLKKPSGVIAAWTYT  138 (262)
Q Consensus        75 ------~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~~~~---d~~~~l~~~~r~Lk~pgG~l~i~~~~  138 (262)
                            ..+.+..+      ++.+  ++...+|+|+++.++||+   |+.+++++++|+|| |||.|++....
T Consensus        86 ~~~~~~~~~~~~~~------d~~~--~~~~~~d~i~~~~~l~~~~~~d~~~~l~~i~~~Lk-pgG~li~~~~~  149 (225)
T d1im8a_          86 AAYHSEIPVEILCN------DIRH--VEIKNASMVILNFTLQFLPPEDRIALLTKIYEGLN-PNGVLVLSEKF  149 (225)
T ss_dssp             HTSCCSSCEEEECS------CTTT--CCCCSEEEEEEESCGGGSCGGGHHHHHHHHHHHEE-EEEEEEEEEEC
T ss_pred             Hhhcccchhhhccc------hhhc--cccccceeeEEeeeccccChhhHHHHHHHHHHhCC-CCceeeccccc
Confidence                  23333333      2333  356789999999999998   56679999999999 99999986544

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=99.80  E-value=1.2e-19  Score=149.10  Aligned_cols=123  Identities=21%  Similarity=0.252  Sum_probs=95.0

Q ss_pred             hhHHHHHHHHhh-C--CCChHHH--H-HHHHhhCCCCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhcC---
Q 037961            4 LFIKQANLYAVA-R--PNYPKEL--F-KLIASKTPKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKL---   74 (262)
Q Consensus         4 ~F~~~a~~Y~~~-r--p~yp~~~--~-~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~---   74 (262)
                      .|+..|+.|+.. +  ..|....  + +.+....+++.+|||+|||+|..+..+++.+.+|+|+|+|+.|++.|+++   
T Consensus         2 ~y~~~A~~YD~l~~~~~~y~~~~~~~~~~~~~~~~~~~~vLDiGCG~G~~~~~l~~~g~~v~GvD~S~~ml~~A~~~~~~   81 (246)
T d1y8ca_           2 CYNKFAHIYDKLIRADVDYKKWSDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPKFKNTWAVDLSQEMLSEAENKFRS   81 (246)
T ss_dssp             CHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHTTTCCTTEEEEETCTTSTTHHHHGGGSSEEEEECSCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCeEEEEeCcCCHHHHHHHHhCCccEeeccchhhhhhccccccc
Confidence            477889999862 2  3464332  2 23333445668899999999999999999999999999999999998752   


Q ss_pred             --CCceEEeCCCCchhhhhhccCCCCceeeEEEc-cccccC----ChhHHHHHHHHhhcCCCeEEEE
Q 037961           75 --PNIRYQLTPTMSITELEQNVATQSSVDLVTIA-SALHWF----DLPQFYKQVKWVLKKPSGVIAA  134 (262)
Q Consensus        75 --~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~-~~~~~~----d~~~~l~~~~r~Lk~pgG~l~i  134 (262)
                        .++++.++|      +.++++ +++||+|+|. .+++++    ++.+++++++++|| |||.|++
T Consensus        82 ~~~~v~~~~~d------~~~~~~-~~~fD~i~~~~~~~~~~~~~~~~~~~l~~~~~~Lk-pgG~~i~  140 (246)
T d1y8ca_          82 QGLKPRLACQD------ISNLNI-NRKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLK-EGGVFIF  140 (246)
T ss_dssp             TTCCCEEECCC------GGGCCC-SCCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEE-EEEEEEE
T ss_pred             cCccceeeccc------hhhhcc-cccccccceeeeeeeccCCHHHHHHHHHHHHHhCC-CCeEEEE
Confidence              478888765      555554 5689999985 567766    45559999999999 9999987

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.80  E-value=5.2e-20  Score=151.53  Aligned_cols=126  Identities=23%  Similarity=0.306  Sum_probs=96.7

Q ss_pred             ChhhhHHHHHHHHhhC----CCChHH--HHHHHHhhC--CCCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHh
Q 037961            1 MAELFIKQANLYAVAR----PNYPKE--LFKLIASKT--PKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAI   72 (262)
Q Consensus         1 ~~~~F~~~a~~Y~~~r----p~yp~~--~~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~   72 (262)
                      |-+.|+..|+.|+..-    +.|..+  .+..+....  ++..+|||+|||+|..+..|++.+.+|+|+|+|+.|++.|+
T Consensus         1 ~~~~~~~~a~~Yd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLDiGcGtG~~~~~l~~~~~~v~gvD~s~~mi~~a~   80 (251)
T d1wzna1           1 MYELYTLLAEYYDTIYRRRIERVKAEIDFVEEIFKEDAKREVRRVLDLACGTGIPTLELAERGYEVVGLDLHEEMLRVAR   80 (251)
T ss_dssp             CCGGGTTTGGGHHHHTHHHHHTHHHHHHHHHHHHHHTCSSCCCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred             CcchhHhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCCccchhhcccceEEEEEeeccccccccc
Confidence            5667778888887742    222222  232233332  35678999999999999999999999999999999999998


Q ss_pred             cC-----CCceEEeCCCCchhhhhhccCCCCceeeEEEc-cccccCC---hhHHHHHHHHhhcCCCeEEEE
Q 037961           73 KL-----PNIRYQLTPTMSITELEQNVATQSSVDLVTIA-SALHWFD---LPQFYKQVKWVLKKPSGVIAA  134 (262)
Q Consensus        73 ~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~-~~~~~~d---~~~~l~~~~r~Lk~pgG~l~i  134 (262)
                      +.     .++.+.+++      +++++++ ++||+|+|. .+++|++   ..+++++++++|| |||++++
T Consensus        81 ~~~~~~~~~i~~~~~d------~~~l~~~-~~fD~I~~~~~~~~~~~~~~~~~~L~~~~~~Lk-pgG~lii  143 (251)
T d1wzna1          81 RKAKERNLKIEFLQGD------VLEIAFK-NEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALK-PGGVFIT  143 (251)
T ss_dssp             HHHHHTTCCCEEEESC------GGGCCCC-SCEEEEEECSSGGGGSCHHHHHHHHHHHHHHEE-EEEEEEE
T ss_pred             cccccccccchheehh------hhhcccc-cccchHhhhhhhhhcCChHHHHHHHHHHHHHcC-CCcEEEE
Confidence            63     468888764      7777765 589999986 5677774   4579999999999 9999988

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=99.79  E-value=3e-18  Score=142.68  Aligned_cols=107  Identities=18%  Similarity=0.200  Sum_probs=88.3

Q ss_pred             HHHHHHHhhC-CCCCeEEEEcCcccHhHHHHHhh--CCeEEEEcCCHHHHHHHhc-CCCceEEeCCCCchhhhhhccCCC
Q 037961           22 ELFKLIASKT-PKRNLAWDVGTRSGQAAASLAQI--YQHVIATDTSPKQLKFAIK-LPNIRYQLTPTMSITELEQNVATQ   97 (262)
Q Consensus        22 ~~~~~l~~~~-~~~~~vlDvGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~   97 (262)
                      .+...+.... .++.+|||+|||+|.++..+++.  +.+++|+|+|+.|++.|++ .+++.+.+++      ++++++++
T Consensus        72 ~~~~~l~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~d------~~~l~~~~  145 (268)
T d1p91a_          72 AIVAQLRERLDDKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQVTFCVAS------SHRLPFSD  145 (268)
T ss_dssp             HHHHHHHHHSCTTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCTTSEEEECC------TTSCSBCT
T ss_pred             HHHHHHHHhcCCCCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhcccccccceeee------hhhccCCC
Confidence            3344455554 46789999999999999999987  4589999999999999875 5789998764      77788999


Q ss_pred             CceeeEEEccccccCChhHHHHHHHHhhcCCCeEEEEEecCCCc
Q 037961           98 SSVDLVTIASALHWFDLPQFYKQVKWVLKKPSGVIAAWTYTMPE  141 (262)
Q Consensus        98 ~~~D~V~~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~~~~~  141 (262)
                      ++||+|++..+.|+      ++++.|+|| |||.|++...+...
T Consensus       146 ~sfD~v~~~~~~~~------~~e~~rvLk-pgG~l~~~~p~~~~  182 (268)
T d1p91a_         146 TSMDAIIRIYAPCK------AEELARVVK-PGGWVITATPGPRH  182 (268)
T ss_dssp             TCEEEEEEESCCCC------HHHHHHHEE-EEEEEEEEEECTTT
T ss_pred             CCEEEEeecCCHHH------HHHHHHHhC-CCcEEEEEeeCCcc
Confidence            99999999888776      578999999 99999996665433

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=99.77  E-value=1e-18  Score=141.81  Aligned_cols=105  Identities=13%  Similarity=0.173  Sum_probs=87.6

Q ss_pred             HHHHhhCCCCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhcC--CCceEEeCCCCchhhhhhccCCCCceee
Q 037961           25 KLIASKTPKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKL--PNIRYQLTPTMSITELEQNVATQSSVDL  102 (262)
Q Consensus        25 ~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~D~  102 (262)
                      +.+....+ +.+|||||||+|.++..+++.+.+|+|+|+|+.|++.|++.  .++++..++      +++.++ +++||+
T Consensus        13 ~~~~~~~~-~~~VLDiGcG~G~~~~~l~~~g~~v~giD~s~~~i~~a~~~~~~~~~~~~~~------~~~~~~-~~~fD~   84 (225)
T d2p7ia1          13 RAFTPFFR-PGNLLELGSFKGDFTSRLQEHFNDITCVEASEEAISHAQGRLKDGITYIHSR------FEDAQL-PRRYDN   84 (225)
T ss_dssp             HHHGGGCC-SSCEEEESCTTSHHHHHHTTTCSCEEEEESCHHHHHHHHHHSCSCEEEEESC------GGGCCC-SSCEEE
T ss_pred             HHhhhhCC-CCcEEEEeCCCcHHHHHHHHcCCeEEEEeCcHHHhhhhhccccccccccccc------cccccc-cccccc
Confidence            33444444 45799999999999999999999999999999999999853  467887764      555554 678999


Q ss_pred             EEEccccccC-ChhHHHHHHH-HhhcCCCeEEEEEecC
Q 037961          103 VTIASALHWF-DLPQFYKQVK-WVLKKPSGVIAAWTYT  138 (262)
Q Consensus       103 V~~~~~~~~~-d~~~~l~~~~-r~Lk~pgG~l~i~~~~  138 (262)
                      |++..++||+ |+..+++++. ++|+ |||.+++...+
T Consensus        85 I~~~~vleh~~d~~~~l~~i~~~~Lk-~gG~l~i~~pn  121 (225)
T d2p7ia1          85 IVLTHVLEHIDDPVALLKRINDDWLA-EGGRLFLVCPN  121 (225)
T ss_dssp             EEEESCGGGCSSHHHHHHHHHHTTEE-EEEEEEEEEEC
T ss_pred             ccccceeEecCCHHHHHHHHHHHhcC-CCceEEEEeCC
Confidence            9999999999 9999999998 8999 99999985544

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=1.1e-18  Score=146.08  Aligned_cols=141  Identities=10%  Similarity=0.092  Sum_probs=92.9

Q ss_pred             CeEEEEcCcccHhHHHHHhh--------CCeEEEEcCCHHHHHHHhcC-------CCceEEeCCCCchh---hhhhccCC
Q 037961           35 NLAWDVGTRSGQAAASLAQI--------YQHVIATDTSPKQLKFAIKL-------PNIRYQLTPTMSIT---ELEQNVAT   96 (262)
Q Consensus        35 ~~vlDvGcG~G~~~~~l~~~--------~~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~---~~~~~~~~   96 (262)
                      .+|||||||+|.++..+++.        +.+++|+|+|+.|++.+++.       .++.+.... ....   +....+.+
T Consensus        42 ~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  120 (280)
T d1jqea_          42 IKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHK-ETSSEYQSRMLEKKE  120 (280)
T ss_dssp             EEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEEC-SCHHHHHHHHTTSSS
T ss_pred             CeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchh-hhhhhhcchhcccCC
Confidence            47999999999998887653        23689999999999998752       233332211 0111   11123567


Q ss_pred             CCceeeEEEccccccC-ChhHHHHHHHHhhcCCCeEEEEEecCCCc-ccHHHHHhhcccccCCCCCCccccchhHHhcCC
Q 037961           97 QSSVDLVTIASALHWF-DLPQFYKQVKWVLKKPSGVIAAWTYTMPE-INESVGAVFKPFDTIDCNPFWAPQRKLVDKKYM  174 (262)
Q Consensus        97 ~~~~D~V~~~~~~~~~-d~~~~l~~~~r~Lk~pgG~l~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (262)
                      +++||+|++.+++||+ |+.++++++.++|+ |||.|++....... +...+...+..+......+++...  .+.+.+.
T Consensus       121 ~~~fD~I~~~~~l~~~~d~~~~l~~l~~~Lk-pgG~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~L~  197 (280)
T d1jqea_         121 LQKWDFIHMIQMLYYVKDIPATLKFFHSLLG-TNAKMLIIVVSGSSGWDKLWKKYGSRFPQDDLCQYITSD--DLTQMLD  197 (280)
T ss_dssp             CCCEEEEEEESCGGGCSCHHHHHHHHHHTEE-EEEEEEEEEECTTSHHHHHHHHHGGGSCCCTTSCCCCHH--HHHHHHH
T ss_pred             CCceeEEEEccceecCCCHHHHHHHHHhhCC-CCCEEEEEEecCcchHHHHHHHHHHhcCCCcccccCCHH--HHHHHHH
Confidence            8999999999999999 99999999999999 99999986655433 233344444444433333444322  2334444


Q ss_pred             CCCCC
Q 037961          175 SIDFP  179 (262)
Q Consensus       175 ~~~~~  179 (262)
                      ..+++
T Consensus       198 ~~G~~  202 (280)
T d1jqea_         198 NLGLK  202 (280)
T ss_dssp             HHTCC
T ss_pred             HCCCc
Confidence            44543

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=99.75  E-value=2.3e-18  Score=144.34  Aligned_cols=111  Identities=14%  Similarity=0.127  Sum_probs=91.8

Q ss_pred             ChHHHHHHHHhhC---CCCCeEEEEcCcccHhHHHHHhh---CCeEEEEcCCHHHHHHHhcC-----CCceEEeCCCCch
Q 037961           19 YPKELFKLIASKT---PKRNLAWDVGTRSGQAAASLAQI---YQHVIATDTSPKQLKFAIKL-----PNIRYQLTPTMSI   87 (262)
Q Consensus        19 yp~~~~~~l~~~~---~~~~~vlDvGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~-----~~~~~~~~~~~~~   87 (262)
                      |.+..++.|.+..   .++.+|||+|||+|..+..+++.   +.+|+|+|+|+.|++.|+++     .++++..+|    
T Consensus        10 ~n~d~l~~l~~~~~~~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~f~~~d----   85 (281)
T d2gh1a1          10 YNDDYVSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGD----   85 (281)
T ss_dssp             CCHHHHHHHHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSSEEEEEESC----
T ss_pred             hhHHHHHHHHHHHhccCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhcccccccccccccccc----
Confidence            4566677776643   46788999999999999999874   57899999999999999853     356777654    


Q ss_pred             hhhhhccCCCCceeeEEEccccccC-ChhHHHHHHHHhhcCCCeEEEEEec
Q 037961           88 TELEQNVATQSSVDLVTIASALHWF-DLPQFYKQVKWVLKKPSGVIAAWTY  137 (262)
Q Consensus        88 ~~~~~~~~~~~~~D~V~~~~~~~~~-d~~~~l~~~~r~Lk~pgG~l~i~~~  137 (262)
                        +++++++ ++||+|++..++||+ |+..+++++.++|| |||.+++...
T Consensus        86 --~~~~~~~-~~fD~v~~~~~l~~~~d~~~~l~~~~~~Lk-pgG~lii~~~  132 (281)
T d2gh1a1          86 --ATEIELN-DKYDIAICHAFLLHMTTPETMLQKMIHSVK-KGGKIICFEP  132 (281)
T ss_dssp             --TTTCCCS-SCEEEEEEESCGGGCSSHHHHHHHHHHTEE-EEEEEEEEEC
T ss_pred             --ccccccc-CCceEEEEehhhhcCCCHHHHHHHHHHHcC-cCcEEEEEEC
Confidence              5566654 579999999999999 99999999999999 9999998553

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=2.1e-18  Score=139.57  Aligned_cols=98  Identities=21%  Similarity=0.256  Sum_probs=83.2

Q ss_pred             CCCCeEEEEcCcccHhHHHHHhh-CCeEEEEcCCHHHHHHHhcC------CCceEEeCCCCchhhhhhccCCCCceeeEE
Q 037961           32 PKRNLAWDVGTRSGQAAASLAQI-YQHVIATDTSPKQLKFAIKL------PNIRYQLTPTMSITELEQNVATQSSVDLVT  104 (262)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~  104 (262)
                      .+..+|||||||+|..+..++.. +.+|+|+|+|+.|++.|++.      .++++.++      +++++++++++||+|+
T Consensus        59 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~ak~~~~~~~~~~~~f~~~------d~~~~~~~~~~fD~I~  132 (222)
T d2ex4a1          59 TGTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCC------GLQDFTPEPDSYDVIW  132 (222)
T ss_dssp             CCCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEEC------CGGGCCCCSSCEEEEE
T ss_pred             CCCCEEEEeccCCCHhhHHHHHhcCCEEEEeecCHHHhhccccccccccccccccccc------cccccccccccccccc
Confidence            35678999999999999998755 66899999999999999863      35677765      4777777889999999


Q ss_pred             EccccccC-Ch--hHHHHHHHHhhcCCCeEEEEEe
Q 037961          105 IASALHWF-DL--PQFYKQVKWVLKKPSGVIAAWT  136 (262)
Q Consensus       105 ~~~~~~~~-d~--~~~l~~~~r~Lk~pgG~l~i~~  136 (262)
                      +..++||+ ++  .++++++.++|| |||.+++..
T Consensus       133 ~~~~l~h~~~~~~~~~l~~i~~~Lk-~~G~~~i~~  166 (222)
T d2ex4a1         133 IQWVIGHLTDQHLAEFLRRCKGSLR-PNGIIVIKD  166 (222)
T ss_dssp             EESCGGGSCHHHHHHHHHHHHHHEE-EEEEEEEEE
T ss_pred             cccccccchhhhhhhHHHHHHHhcC-CcceEEEEE
Confidence            99999999 44  369999999999 999999854

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.74  E-value=1.1e-17  Score=133.00  Aligned_cols=96  Identities=18%  Similarity=0.245  Sum_probs=80.2

Q ss_pred             CCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhcC------CCceEEeCCCCchhhhhhccCCCCceeeEEEcc
Q 037961           34 RNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKL------PNIRYQLTPTMSITELEQNVATQSSVDLVTIAS  107 (262)
Q Consensus        34 ~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~  107 (262)
                      +.+|||||||+|..+..+++++.+|+|+|+|+.|++.+++.      +++.+...+      +..++ .+++||+|++..
T Consensus        31 ~grvLDiGcG~G~~~~~la~~g~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~d------~~~~~-~~~~fD~I~~~~  103 (198)
T d2i6ga1          31 PGRTLDLGCGNGRNSLYLAANGYDVTAWDKNPASMANLERIKAAEGLDNLQTDLVD------LNTLT-FDGEYDFILSTV  103 (198)
T ss_dssp             SCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCTTEEEEECC------TTTCC-CCCCEEEEEEES
T ss_pred             CCcEEEECCCCCHHHHHHHHHhhhhccccCcHHHHHHHHHHhhhccccchhhhhee------ccccc-ccccccEEEEee
Confidence            35899999999999999999999999999999999988742      456666554      55555 367899999999


Q ss_pred             ccccCCh---hHHHHHHHHhhcCCCeEEEEEec
Q 037961          108 ALHWFDL---PQFYKQVKWVLKKPSGVIAAWTY  137 (262)
Q Consensus       108 ~~~~~d~---~~~l~~~~r~Lk~pgG~l~i~~~  137 (262)
                      ++|++++   .++++++.++|+ |||.+++...
T Consensus       104 ~~~~~~~~~~~~~l~~~~~~L~-pgG~~~~~~~  135 (198)
T d2i6ga1         104 VMMFLEAQTIPGLIANMQRCTK-PGGYNLIVAA  135 (198)
T ss_dssp             CGGGSCTTHHHHHHHHHHHTEE-EEEEEEEEEE
T ss_pred             eeecCCHHHHHHHHHHHHHHcC-CCcEEEEEEe
Confidence            9999943   359999999999 9999988543

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=99.73  E-value=5.5e-18  Score=139.92  Aligned_cols=97  Identities=22%  Similarity=0.302  Sum_probs=83.0

Q ss_pred             CCCeEEEEcCcccHhHHHHHhh-CCeEEEEcCCHHHHHHHhcC----CCceEEeCCCCchhhhhhccCCCCceeeEEEcc
Q 037961           33 KRNLAWDVGTRSGQAAASLAQI-YQHVIATDTSPKQLKFAIKL----PNIRYQLTPTMSITELEQNVATQSSVDLVTIAS  107 (262)
Q Consensus        33 ~~~~vlDvGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~  107 (262)
                      +..+|||+|||+|.+|..|+.. +.+|+++|+|+.|++.|++.    +.+++.++      +++++++++++||+|++..
T Consensus        93 ~~~~vLD~GcG~G~~t~~ll~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~------d~~~~~~~~~~fD~I~~~~  166 (254)
T d1xtpa_          93 GTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGMPVGKFILA------SMETATLPPNTYDLIVIQW  166 (254)
T ss_dssp             CCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTSSEEEEEES------CGGGCCCCSSCEEEEEEES
T ss_pred             CCCeEEEecccCChhhHHHHhhcCceEEEEcCCHHHHHhhhccccccccceeEEc------cccccccCCCccceEEeec
Confidence            5678999999999999987754 67899999999999999853    45677765      4777888889999999999


Q ss_pred             ccccC-Chh--HHHHHHHHhhcCCCeEEEEEe
Q 037961          108 ALHWF-DLP--QFYKQVKWVLKKPSGVIAAWT  136 (262)
Q Consensus       108 ~~~~~-d~~--~~l~~~~r~Lk~pgG~l~i~~  136 (262)
                      ++||+ |.+  ++++++.++|+ |||.|++..
T Consensus       167 vl~hl~d~d~~~~l~~~~~~Lk-pgG~iii~e  197 (254)
T d1xtpa_         167 TAIYLTDADFVKFFKHCQQALT-PNGYIFFKE  197 (254)
T ss_dssp             CGGGSCHHHHHHHHHHHHHHEE-EEEEEEEEE
T ss_pred             cccccchhhhHHHHHHHHHhcC-CCcEEEEEe
Confidence            99999 543  68999999999 999999843

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=99.73  E-value=6.7e-18  Score=133.31  Aligned_cols=112  Identities=11%  Similarity=-0.023  Sum_probs=85.6

Q ss_pred             CChHHHHHHHHhh-CCCCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhcC------------------CCce
Q 037961           18 NYPKELFKLIASK-TPKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKL------------------PNIR   78 (262)
Q Consensus        18 ~yp~~~~~~l~~~-~~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~------------------~~~~   78 (262)
                      ..++.+...+... .+++.+|||+|||+|..+..|+++|.+|+|+|+|+.|++.|+++                  ..+.
T Consensus         4 ~~~~~~~~~~~~l~~~~~~rvLd~GCG~G~~a~~la~~G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~   83 (201)
T d1pjza_           4 EVNKDLQQYWSSLNVVPGARVLVPLCGKSQDMSWLSGQGYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIE   83 (201)
T ss_dssp             SSTHHHHHHHHHHCCCTTCEEEETTTCCSHHHHHHHHHCCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSE
T ss_pred             hHHHHHHHHHHHcCCCCCCEEEEecCcCCHHHHHHHHcCCceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccc
Confidence            3444554544444 46888999999999999999999999999999999999999863                  1233


Q ss_pred             EEeCCCCchhhhhhcc-CCCCceeeEEEccccccCC---hhHHHHHHHHhhcCCCeEEEEEe
Q 037961           79 YQLTPTMSITELEQNV-ATQSSVDLVTIASALHWFD---LPQFYKQVKWVLKKPSGVIAAWT  136 (262)
Q Consensus        79 ~~~~~~~~~~~~~~~~-~~~~~~D~V~~~~~~~~~d---~~~~l~~~~r~Lk~pgG~l~i~~  136 (262)
                      +..++      +..++ ....+||+|++..++|++.   ...++++++++|| |||.+++..
T Consensus        84 ~~~~d------~~~l~~~~~~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~Lk-pgG~l~l~~  138 (201)
T d1pjza_          84 IWCGD------FFALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMP-QACSGLLIT  138 (201)
T ss_dssp             EEEEC------CSSSTHHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSC-SEEEEEEEE
T ss_pred             eeccc------ccccccccccceeEEEEEeeeEecchhhhHHHHHHHHHhcC-CCcEEEEEE
Confidence            44433      32222 2346799999999999994   4569999999999 999988733

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=99.73  E-value=6.4e-18  Score=139.34  Aligned_cols=104  Identities=12%  Similarity=0.089  Sum_probs=84.0

Q ss_pred             HHhhCCCCCeEEEEcCcccHhHHHHHhhC-CeEEEEcCCHHHHHHHhcC-------CCceEEeCCCCchhhhhhccC-CC
Q 037961           27 IASKTPKRNLAWDVGTRSGQAAASLAQIY-QHVIATDTSPKQLKFAIKL-------PNIRYQLTPTMSITELEQNVA-TQ   97 (262)
Q Consensus        27 l~~~~~~~~~vlDvGcG~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~~~~~~~-~~   97 (262)
                      |..+.+++.+|||+|||+|..+..+++.+ .+|+|+|+|+.|++.|+++       .++.+.++|      +...++ .+
T Consensus        18 I~~~~~~~~~VLDlGCG~G~~~~~~~~~~~~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D------~~~~~~~~~   91 (252)
T d1ri5a_          18 IRLYTKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQD------SYGRHMDLG   91 (252)
T ss_dssp             HHHHCCTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESC------TTTSCCCCS
T ss_pred             HHHhCCCcCEEEEecccCcHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcc------hhhhccccc
Confidence            34567788999999999999999998876 5899999999999999742       357777765      333333 46


Q ss_pred             CceeeEEEccccccC-Ch----hHHHHHHHHhhcCCCeEEEEEec
Q 037961           98 SSVDLVTIASALHWF-DL----PQFYKQVKWVLKKPSGVIAAWTY  137 (262)
Q Consensus        98 ~~~D~V~~~~~~~~~-d~----~~~l~~~~r~Lk~pgG~l~i~~~  137 (262)
                      ++||+|+|..++||+ +.    ..+++++.++|| |||.|++...
T Consensus        92 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~Lk-~gG~~i~~~~  135 (252)
T d1ri5a_          92 KEFDVISSQFSFHYAFSTSESLDIAQRNIARHLR-PGGYFIMTVP  135 (252)
T ss_dssp             SCEEEEEEESCGGGGGSSHHHHHHHHHHHHHTEE-EEEEEEEEEE
T ss_pred             ccceEEEEcceeeecCCCHHHHHHHHHHHhceeC-CCCEEEEEec
Confidence            789999999999997 43    358999999999 9999988443

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=1.1e-16  Score=129.92  Aligned_cols=111  Identities=10%  Similarity=-0.089  Sum_probs=87.4

Q ss_pred             ChHHHHHHHHhhC--CCCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhcC----------------------
Q 037961           19 YPKELFKLIASKT--PKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKL----------------------   74 (262)
Q Consensus        19 yp~~~~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~----------------------   74 (262)
                      ..+.+.+.+....  +++.+|||+|||+|..+..|++.|++|+|+|+|+.+++.|++.                      
T Consensus        29 ~~~~l~~~~~~~l~~~~~~rvLd~GCG~G~~a~~LA~~G~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~  108 (229)
T d2bzga1          29 GHQLLKKHLDTFLKGKSGLRVFFPLCGKAVEMKWFADRGHSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSS  108 (229)
T ss_dssp             CCHHHHHHHHHHHTTCCSCEEEETTCTTCTHHHHHHHTTCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEET
T ss_pred             CCHHHHHHHHHhcCCCCCCEEEEeCCCCcHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeec
Confidence            3456666665543  5778999999999999999999999999999999999988642                      


Q ss_pred             -CCceEEeCCCCchhhhhhc-cCCCCceeeEEEccccccCC---hhHHHHHHHHhhcCCCeEEEEEe
Q 037961           75 -PNIRYQLTPTMSITELEQN-VATQSSVDLVTIASALHWFD---LPQFYKQVKWVLKKPSGVIAAWT  136 (262)
Q Consensus        75 -~~~~~~~~~~~~~~~~~~~-~~~~~~~D~V~~~~~~~~~d---~~~~l~~~~r~Lk~pgG~l~i~~  136 (262)
                       .++++.++|      +.++ +...+.||+|+...++|++.   ....++++.++|| |||++++..
T Consensus       109 ~~~v~~~~~d------~~~l~~~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~Lk-pgG~~~l~~  168 (229)
T d2bzga1         109 SGNISLYCCS------IFDLPRTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLG-KKFQYLLCV  168 (229)
T ss_dssp             TSSEEEEESC------GGGGGGSCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEE-EEEEEEEEE
T ss_pred             CCcEEEEEcc------hhhccccccCceeEEEEEEEEEeccchhhHHHHHHHHhhcC-CcceEEEEE
Confidence             234455543      4333 35678999999999999993   3458999999999 999987743

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=4.1e-17  Score=132.59  Aligned_cols=111  Identities=12%  Similarity=0.068  Sum_probs=85.1

Q ss_pred             HHHHHHHHhhC-CCCCeEEEEcCcccHhHHHHHhh-CCeEEEEcCCHHHHHHHhcC-----CCceEEeCCCCchhhhhhc
Q 037961           21 KELFKLIASKT-PKRNLAWDVGTRSGQAAASLAQI-YQHVIATDTSPKQLKFAIKL-----PNIRYQLTPTMSITELEQN   93 (262)
Q Consensus        21 ~~~~~~l~~~~-~~~~~vlDvGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~-----~~~~~~~~~~~~~~~~~~~   93 (262)
                      ..+++.+.... +++.+|||||||+|..+..+++. +.+|+|+|+|+.|++.|++.     .++.....+    ......
T Consensus        40 ~~~~~~la~~~~~~g~~VLdIGcG~G~~a~~~a~~~~~~v~~id~s~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~~  115 (229)
T d1zx0a1          40 TPYMHALAAAASSKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGL----WEDVAP  115 (229)
T ss_dssp             HHHHHHHHHHHTTTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESC----HHHHGG
T ss_pred             HHHHHHHHHhhccCCCeEEEeeccchHHHHHHHHcCCCeEEEeCCCHHHHHHHHHHhhhccccccccccc----cccccc
Confidence            45556565544 57789999999999999999986 46899999999999999853     344555544    222333


Q ss_pred             cCCCCceeeEE-----EccccccC-ChhHHHHHHHHhhcCCCeEEEEEe
Q 037961           94 VATQSSVDLVT-----IASALHWF-DLPQFYKQVKWVLKKPSGVIAAWT  136 (262)
Q Consensus        94 ~~~~~~~D~V~-----~~~~~~~~-d~~~~l~~~~r~Lk~pgG~l~i~~  136 (262)
                      .+++++||.|+     +...++++ +++.+++++.|+|| |||+|+++.
T Consensus       116 ~~~~~~fD~i~fD~~~~~~~~~~~~~~~~~~~~~~r~Lk-pGG~~~~~~  163 (229)
T d1zx0a1         116 TLPDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLK-PGGVLTYCN  163 (229)
T ss_dssp             GSCTTCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEE-EEEEEEECC
T ss_pred             ccccccccceeecccccccccccccCHHHHHHHHHHHcC-CCcEEEEEe
Confidence            56788999987     45566666 89999999999999 999998744

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.65  E-value=3.6e-16  Score=122.93  Aligned_cols=108  Identities=22%  Similarity=0.269  Sum_probs=88.1

Q ss_pred             HHHHHHHHhhC--CCCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhcC-------CCceEEeCCCCchhhhh
Q 037961           21 KELFKLIASKT--PKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKL-------PNIRYQLTPTMSITELE   91 (262)
Q Consensus        21 ~~~~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~~~   91 (262)
                      +++...++..+  .++.+|||+|||+|.++..++..+.+|+|+|+++.|++.|+++       .++++..++      +.
T Consensus        19 ~eir~~il~~l~~~~g~~VLDiGcGsG~~s~~lA~~~~~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gd------a~   92 (186)
T d1l3ia_          19 MEVRCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGD------AP   92 (186)
T ss_dssp             HHHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESC------HH
T ss_pred             HHHHHHHHHhcCCCCCCEEEEEECCeEcccccccccceEEEEecCCHHHHHHHHHHHHHcCCCcceEEEECc------hh
Confidence            45555555544  5789999999999999999999999999999999999999863       578888765      55


Q ss_pred             hccCCCCceeeEEEccccccCChhHHHHHHHHhhcCCCeEEEEEec
Q 037961           92 QNVATQSSVDLVTIASALHWFDLPQFYKQVKWVLKKPSGVIAAWTY  137 (262)
Q Consensus        92 ~~~~~~~~~D~V~~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~  137 (262)
                      +...+..+||+|++....+  +...+++.+.+.|| |||++++...
T Consensus        93 ~~~~~~~~~D~v~~~~~~~--~~~~~~~~~~~~Lk-pgG~lvi~~~  135 (186)
T d1l3ia_          93 EALCKIPDIDIAVVGGSGG--ELQEILRIIKDKLK-PGGRIIVTAI  135 (186)
T ss_dssp             HHHTTSCCEEEEEESCCTT--CHHHHHHHHHHTEE-EEEEEEEEEC
T ss_pred             hcccccCCcCEEEEeCccc--cchHHHHHHHHHhC-cCCEEEEEee
Confidence            5556778999999987654  45778999999999 9999988543

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.65  E-value=5.6e-16  Score=129.79  Aligned_cols=102  Identities=18%  Similarity=0.140  Sum_probs=82.7

Q ss_pred             HHHHHhhC--CCCCeEEEEcCcccHhHHHHHh-hCCeEEEEcCCHHHHHHHhcC-------CCceEEeCCCCchhhhhhc
Q 037961           24 FKLIASKT--PKRNLAWDVGTRSGQAAASLAQ-IYQHVIATDTSPKQLKFAIKL-------PNIRYQLTPTMSITELEQN   93 (262)
Q Consensus        24 ~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~-~~~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~~~~~   93 (262)
                      ++.+.+.+  +++.+|||||||.|.++..+++ .+++|+|+++|+.+++.++++       ..+.+...+         .
T Consensus        50 ~~~~~~~l~l~~G~~VLDiGCG~G~~~~~~a~~~g~~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~d---------~  120 (291)
T d1kpia_          50 RKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQG---------W  120 (291)
T ss_dssp             HHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHSCCSSCEEEEECC---------G
T ss_pred             HHHHHHhcCCCCCCEEEEecCcchHHHHHHHHhcCcceeeccchHHHHHHHHHHHHhhccchhhhhhhhc---------c
Confidence            56666665  5899999999999999999886 599999999999999988752       234444332         2


Q ss_pred             cCCCCceeeEEEccccccC-Ch---------hHHHHHHHHhhcCCCeEEEEE
Q 037961           94 VATQSSVDLVTIASALHWF-DL---------PQFYKQVKWVLKKPSGVIAAW  135 (262)
Q Consensus        94 ~~~~~~~D~V~~~~~~~~~-d~---------~~~l~~~~r~Lk~pgG~l~i~  135 (262)
                      +..+++||.|+|..++.|+ +.         +.+++++.++|| |||++++-
T Consensus       121 ~~~~~~fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~Lk-pgG~~~l~  171 (291)
T d1kpia_         121 EEFDEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTP-DDGRMLLH  171 (291)
T ss_dssp             GGCCCCCSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSC-TTCEEEEE
T ss_pred             cccccccceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCC-CCCceEEE
Confidence            3357899999999999888 53         679999999999 99999983

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.65  E-value=2.2e-16  Score=132.70  Aligned_cols=111  Identities=17%  Similarity=0.154  Sum_probs=78.1

Q ss_pred             HHHHHHHHhhC--CCCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhcC-----C-----CceEEeCCCCchh
Q 037961           21 KELFKLIASKT--PKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKL-----P-----NIRYQLTPTMSIT   88 (262)
Q Consensus        21 ~~~~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~-----~-----~~~~~~~~~~~~~   88 (262)
                      +...+++...+  .+..+|||+|||+|..+..|++.|.+|+|+|+|+.|++.|++.     .     .......+ +...
T Consensus        42 ~~~~~~l~~~l~~~~~~~vLD~GcG~G~~~~~la~~g~~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~-~~~~  120 (292)
T d1xvaa_          42 AEYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEAN-WLTL  120 (292)
T ss_dssp             HHHHHHHHHHHHHTTCCEEEESSCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECC-GGGH
T ss_pred             HHHHHHHHHHhhhcCCCEEEEecCCCcHHHHHHHHcCCeeeeccCchHHHHHHHHHHHhcccccccceeeeeecc-cccc
Confidence            33344444333  2456899999999999999999999999999999999998752     1     12222222 1001


Q ss_pred             hhhhccCCCCceeeEEEc-cccccC-C-------hhHHHHHHHHhhcCCCeEEEEE
Q 037961           89 ELEQNVATQSSVDLVTIA-SALHWF-D-------LPQFYKQVKWVLKKPSGVIAAW  135 (262)
Q Consensus        89 ~~~~~~~~~~~~D~V~~~-~~~~~~-d-------~~~~l~~~~r~Lk~pgG~l~i~  135 (262)
                      + ...+ ...+||+|+|. .+++|+ +       ...+++++.++|| |||+|++-
T Consensus       121 ~-~~~~-~~~~fd~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk-pgG~li~~  173 (292)
T d1xvaa_         121 D-KDVP-AGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVR-PGGLLVID  173 (292)
T ss_dssp             H-HHSC-CTTCEEEEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEE-EEEEEEEE
T ss_pred             c-cccC-CCCCceEEEEecCchhhcCCcccChHHHHHHHHHHHHHcC-cCcEEEEe
Confidence            1 1222 45689999975 467776 4       3459999999999 99999983

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.65  E-value=6.3e-16  Score=129.00  Aligned_cols=101  Identities=18%  Similarity=0.173  Sum_probs=82.0

Q ss_pred             HHHHHhhC--CCCCeEEEEcCcccHhHHHHHhh-CCeEEEEcCCHHHHHHHhcC-------CCceEEeCCCCchhhhhhc
Q 037961           24 FKLIASKT--PKRNLAWDVGTRSGQAAASLAQI-YQHVIATDTSPKQLKFAIKL-------PNIRYQLTPTMSITELEQN   93 (262)
Q Consensus        24 ~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~~~~~   93 (262)
                      ++.+++.+  +++.+|||||||+|.++..+++. +++|+|+|+|+++++.|+++       ..+.+...+      ..+ 
T Consensus        41 ~~~~~~~l~l~~g~~VLDiGCG~G~~a~~~a~~~g~~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d------~~~-  113 (280)
T d2fk8a1          41 VDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQG------WED-  113 (280)
T ss_dssp             HHHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESC------GGG-
T ss_pred             HHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhCceeEEEecchHHHHHHHHHHHHhhccccchhhhhhh------hhh-
Confidence            56666665  58899999999999999998875 89999999999999998752       233444332      222 


Q ss_pred             cCCCCceeeEEEccccccC-Ch--hHHHHHHHHhhcCCCeEEEE
Q 037961           94 VATQSSVDLVTIASALHWF-DL--PQFYKQVKWVLKKPSGVIAA  134 (262)
Q Consensus        94 ~~~~~~~D~V~~~~~~~~~-d~--~~~l~~~~r~Lk~pgG~l~i  134 (262)
                        .+++||.|++..+++++ +.  +.+++++.++|| |||.+++
T Consensus       114 --~~~~fD~i~si~~~eh~~~~~~~~~f~~i~~~Lk-pgG~~~i  154 (280)
T d2fk8a1         114 --FAEPVDRIVSIEAFEHFGHENYDDFFKRCFNIMP-ADGRMTV  154 (280)
T ss_dssp             --CCCCCSEEEEESCGGGTCGGGHHHHHHHHHHHSC-TTCEEEE
T ss_pred             --hccchhhhhHhhHHHHhhhhhHHHHHHHHHhccC-CCceEEE
Confidence              35789999999999999 33  679999999999 9999998

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=99.65  E-value=3.1e-16  Score=128.84  Aligned_cols=106  Identities=19%  Similarity=0.143  Sum_probs=85.5

Q ss_pred             HHHHHHHHhhCCCCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhcC-----CCceEEeCCCCchhhhhhccC
Q 037961           21 KELFKLIASKTPKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKL-----PNIRYQLTPTMSITELEQNVA   95 (262)
Q Consensus        21 ~~~~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~-----~~~~~~~~~~~~~~~~~~~~~   95 (262)
                      .-.++.|.....++.+|||+|||+|.++..+++.+++|+|+|+|+.|++.|+++     .++.+.+++      +.+ .+
T Consensus       108 ~l~l~~l~~~~~~g~~VLDiGcGsG~l~i~aa~~g~~V~gvDis~~av~~A~~na~~n~~~~~~~~~d------~~~-~~  180 (254)
T d2nxca1         108 RLALKALARHLRPGDKVLDLGTGSGVLAIAAEKLGGKALGVDIDPMVLPQAEANAKRNGVRPRFLEGS------LEA-AL  180 (254)
T ss_dssp             HHHHHHHHHHCCTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCGGGHHHHHHHHHHTTCCCEEEESC------HHH-HG
T ss_pred             hHHHHHHHhhcCccCEEEEcccchhHHHHHHHhcCCEEEEEECChHHHHHHHHHHHHcCCceeEEecc------ccc-cc
Confidence            455777878888999999999999999999999999999999999999999853     345666654      332 23


Q ss_pred             CCCceeeEEEccccccCChhHHHHHHHHhhcCCCeEEEEEe
Q 037961           96 TQSSVDLVTIASALHWFDLPQFYKQVKWVLKKPSGVIAAWT  136 (262)
Q Consensus        96 ~~~~~D~V~~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~  136 (262)
                      +.++||+|+++...+  ....+++++.++|| |||+|++..
T Consensus       181 ~~~~fD~V~ani~~~--~l~~l~~~~~~~Lk-pGG~lilSg  218 (254)
T d2nxca1         181 PFGPFDLLVANLYAE--LHAALAPRYREALV-PGGRALLTG  218 (254)
T ss_dssp             GGCCEEEEEEECCHH--HHHHHHHHHHHHEE-EEEEEEEEE
T ss_pred             cccccchhhhccccc--cHHHHHHHHHHhcC-CCcEEEEEe
Confidence            567899999975444  35668899999999 999999854

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.64  E-value=4.5e-16  Score=123.14  Aligned_cols=104  Identities=18%  Similarity=0.193  Sum_probs=84.7

Q ss_pred             HHHHhhC--CCCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhcC--------CCceEEeCCCCchhhhhhcc
Q 037961           25 KLIASKT--PKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKL--------PNIRYQLTPTMSITELEQNV   94 (262)
Q Consensus        25 ~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~--------~~~~~~~~~~~~~~~~~~~~   94 (262)
                      +.+++.+  .++.+|||+|||+|.++..+++.+.+|+++|+|+.+++.++++        .++++..+|      ..+ .
T Consensus        42 ~lLi~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d------~~~-~  114 (194)
T d1dusa_          42 KILVENVVVDKDDDILDLGCGYGVIGIALADEVKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSD------LYE-N  114 (194)
T ss_dssp             HHHHHHCCCCTTCEEEEETCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECS------TTT-T
T ss_pred             HHHHHhCCcCCCCeEEEEeecCChhHHHHHhhccccceeeeccccchhHHHHHHHhCCccceEEEEEcc------hhh-h
Confidence            4455554  4678999999999999999999999999999999999999752        346666665      222 3


Q ss_pred             CCCCceeeEEEccccccC-C-hhHHHHHHHHhhcCCCeEEEEEe
Q 037961           95 ATQSSVDLVTIASALHWF-D-LPQFYKQVKWVLKKPSGVIAAWT  136 (262)
Q Consensus        95 ~~~~~~D~V~~~~~~~~~-d-~~~~l~~~~r~Lk~pgG~l~i~~  136 (262)
                      +++++||+|+++.++|+. + .+++++++.++|+ |||.+++..
T Consensus       115 ~~~~~fD~Ii~~~p~~~~~~~~~~~l~~~~~~Lk-pgG~l~i~~  157 (194)
T d1dusa_         115 VKDRKYNKIITNPPIRAGKEVLHRIIEEGKELLK-DNGEIWVVI  157 (194)
T ss_dssp             CTTSCEEEEEECCCSTTCHHHHHHHHHHHHHHEE-EEEEEEEEE
T ss_pred             hccCCceEEEEcccEEecchhhhhHHHHHHHhcC-cCcEEEEEE
Confidence            467899999999999887 4 4679999999999 999998744

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.63  E-value=1.8e-15  Score=126.37  Aligned_cols=101  Identities=22%  Similarity=0.235  Sum_probs=83.7

Q ss_pred             HHHHHhhC--CCCCeEEEEcCcccHhHHHHHh-hCCeEEEEcCCHHHHHHHhcC-------CCceEEeCCCCchhhhhhc
Q 037961           24 FKLIASKT--PKRNLAWDVGTRSGQAAASLAQ-IYQHVIATDTSPKQLKFAIKL-------PNIRYQLTPTMSITELEQN   93 (262)
Q Consensus        24 ~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~-~~~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~~~~~   93 (262)
                      .+.+.+.+  +++.+|||||||.|.++..+++ .|++|+|+++|+.+++.|+++       .++.+...|      ..++
T Consensus        51 ~~~~~~~l~l~~G~~VLDiGCG~G~~a~~~a~~~g~~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d------~~~~  124 (285)
T d1kpga_          51 IDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAG------WEQF  124 (285)
T ss_dssp             HHHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESC------GGGC
T ss_pred             HHHHHHHcCCCCCCEEEEecCcchHHHHHHHhcCCcceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhh------hhcc
Confidence            56666665  5899999999999999999877 489999999999999998752       456666544      4443


Q ss_pred             cCCCCceeeEEEccccccC-Ch--hHHHHHHHHhhcCCCeEEEE
Q 037961           94 VATQSSVDLVTIASALHWF-DL--PQFYKQVKWVLKKPSGVIAA  134 (262)
Q Consensus        94 ~~~~~~~D~V~~~~~~~~~-d~--~~~l~~~~r~Lk~pgG~l~i  134 (262)
                         +++||.|++..++.++ +.  ..+++++.++|| |||++++
T Consensus       125 ---~~~fD~i~si~~~eh~~~~~~~~~~~~~~r~Lk-pgG~~~l  164 (285)
T d1kpga_         125 ---DEPVDRIVSIGAFEHFGHERYDAFFSLAHRLLP-ADGVMLL  164 (285)
T ss_dssp             ---CCCCSEEEEESCGGGTCTTTHHHHHHHHHHHSC-TTCEEEE
T ss_pred             ---cccccceeeehhhhhcCchhHHHHHHHHHhhcC-CCCcEEE
Confidence               4689999999999998 33  679999999999 9999998

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.61  E-value=2.1e-15  Score=124.12  Aligned_cols=114  Identities=19%  Similarity=0.250  Sum_probs=91.6

Q ss_pred             hCCCChHHHHHHHHhh-CCCCCeEEEEcCcccHhHHHHHhh---CCeEEEEcCCHHHHHHHhcC---------CCceEEe
Q 037961           15 ARPNYPKELFKLIASK-TPKRNLAWDVGTRSGQAAASLAQI---YQHVIATDTSPKQLKFAIKL---------PNIRYQL   81 (262)
Q Consensus        15 ~rp~yp~~~~~~l~~~-~~~~~~vlDvGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~---------~~~~~~~   81 (262)
                      ..+-||+...-.+... +.++.+|||+|||+|.+|..|++.   ..+|+++|+++++++.|+++         .++.+..
T Consensus        77 tqiiypkD~s~Ii~~l~i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~  156 (264)
T d1i9ga_          77 PQVIYPKDAAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVV  156 (264)
T ss_dssp             SCCCCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEEC
T ss_pred             ccccchHHHHHHHHHhCCCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEe
Confidence            4467887755444333 479999999999999999999986   35899999999999999852         4667776


Q ss_pred             CCCCchhhhhhccCCCCceeeEEEccccccCChhHHHHHHHHhhcCCCeEEEEEecCC
Q 037961           82 TPTMSITELEQNVATQSSVDLVTIASALHWFDLPQFYKQVKWVLKKPSGVIAAWTYTM  139 (262)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~D~V~~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~~~  139 (262)
                      +|      +.+.++++++||.|+.    |--||..++.++.++|| |||.|+++...-
T Consensus       157 ~d------~~~~~~~~~~fDaV~l----dlp~P~~~l~~~~~~Lk-pGG~lv~~~P~i  203 (264)
T d1i9ga_         157 SD------LADSELPDGSVDRAVL----DMLAPWEVLDAVSRLLV-AGGVLMVYVATV  203 (264)
T ss_dssp             SC------GGGCCCCTTCEEEEEE----ESSCGGGGHHHHHHHEE-EEEEEEEEESSH
T ss_pred             cc------cccccccCCCcceEEE----ecCCHHHHHHHHHhccC-CCCEEEEEeCcc
Confidence            54      6666778999999985    33488899999999999 999999977554

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.61  E-value=1.4e-15  Score=123.21  Aligned_cols=117  Identities=19%  Similarity=0.189  Sum_probs=89.6

Q ss_pred             HHhhCCCChHHHHHHHHhhC-----CCCCeEEEEcCcccHhHHHHHhhC--CeEEEEcCCHHHHHHHhc----CCCceEE
Q 037961           12 YAVARPNYPKELFKLIASKT-----PKRNLAWDVGTRSGQAAASLAQIY--QHVIATDTSPKQLKFAIK----LPNIRYQ   80 (262)
Q Consensus        12 Y~~~rp~yp~~~~~~l~~~~-----~~~~~vlDvGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~----~~~~~~~   80 (262)
                      |..+.|.+ .++...|...+     +++.+|||+|||+|..+..+++.+  ..|+|+|+|+.|++.+++    .+++..+
T Consensus        49 ~r~w~p~r-sklaA~i~~gl~~l~ikpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~~~ni~~i  127 (230)
T d1g8sa_          49 YRIWNPNK-SKLAAAIIKGLKVMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPI  127 (230)
T ss_dssp             EEECCTTT-CHHHHHHHTTCCCCCCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEE
T ss_pred             eeeECCCc-cHHHHHHHhhHHhCCCCCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhhhcccceE
Confidence            45555666 35555554432     588999999999999999999874  589999999999998875    4677777


Q ss_pred             eCCCCchhhhhhccCCCCceeeEEEccccccC-ChhHHHHHHHHhhcCCCeEEEEE
Q 037961           81 LTPTMSITELEQNVATQSSVDLVTIASALHWF-DLPQFYKQVKWVLKKPSGVIAAW  135 (262)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~D~V~~~~~~~~~-d~~~~l~~~~r~Lk~pgG~l~i~  135 (262)
                      ..+.     .....+.+..+|++++.+.+|+. ++..++.++.++|| |||.+++.
T Consensus       128 ~~d~-----~~~~~~~~~~~~v~~i~~~~~~~~~~~~~l~~~~r~LK-pgG~~~i~  177 (230)
T d1g8sa_         128 LGDA-----NKPQEYANIVEKVDVIYEDVAQPNQAEILIKNAKWFLK-KGGYGMIA  177 (230)
T ss_dssp             ECCT-----TCGGGGTTTCCCEEEEEECCCSTTHHHHHHHHHHHHEE-EEEEEEEE
T ss_pred             EEee-----ccCcccccccceeEEeeccccchHHHHHHHHHHHHhcc-cCceEEEE
Confidence            7651     11122356678888888888888 77889999999999 99998874

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.57  E-value=1e-14  Score=115.92  Aligned_cols=97  Identities=19%  Similarity=0.190  Sum_probs=81.4

Q ss_pred             CCCeEEEEcCcccHhHHHHHhh--CCeEEEEcCCHHHHHHHhc------CCCceEEeCCCCchhhhhhcc--CCCCceee
Q 037961           33 KRNLAWDVGTRSGQAAASLAQI--YQHVIATDTSPKQLKFAIK------LPNIRYQLTPTMSITELEQNV--ATQSSVDL  102 (262)
Q Consensus        33 ~~~~vlDvGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~------~~~~~~~~~~~~~~~~~~~~~--~~~~~~D~  102 (262)
                      +...|||||||+|.++..+|+.  ..+++|+|+++.+++.|.+      ..|+.++.+|      +..+.  ++++++|.
T Consensus        29 ~~PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~~D------a~~l~~~~~~~~~d~  102 (204)
T d2fcaa1          29 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNID------ADTLTDVFEPGEVKR  102 (204)
T ss_dssp             CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCC------GGGHHHHCCTTSCCE
T ss_pred             CCceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHhccCchhcccc------hhhhhcccCchhhhc
Confidence            4568999999999999999987  4689999999999998764      3688888876      33322  68899999


Q ss_pred             EEEccccccCCh---------hHHHHHHHHhhcCCCeEEEEEe
Q 037961          103 VTIASALHWFDL---------PQFYKQVKWVLKKPSGVIAAWT  136 (262)
Q Consensus       103 V~~~~~~~~~d~---------~~~l~~~~r~Lk~pgG~l~i~~  136 (262)
                      |++.+..+|...         ..+++++.|+|| |||.|.+.+
T Consensus       103 v~i~fp~P~~k~~h~k~Rl~~~~~l~~~~r~Lk-pgG~l~i~T  144 (204)
T d2fcaa1         103 VYLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMG-KGGSIHFKT  144 (204)
T ss_dssp             EEEESCCCCCSGGGGGGSTTSHHHHHHHHHHHT-TSCEEEEEE
T ss_pred             cccccccccchhhhcchhhhHHHHHHHHHHhCC-CCcEEEEEE
Confidence            999999999843         369999999999 999999865

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=99.56  E-value=6.9e-15  Score=120.96  Aligned_cols=95  Identities=16%  Similarity=0.137  Sum_probs=75.6

Q ss_pred             CCCeEEEEcCcccHhHHHHHhh--CCeEEEEcCCHHHHHHHhcC-------CCceEEeCCCCchhhhhhccCCCCceeeE
Q 037961           33 KRNLAWDVGTRSGQAAASLAQI--YQHVIATDTSPKQLKFAIKL-------PNIRYQLTPTMSITELEQNVATQSSVDLV  103 (262)
Q Consensus        33 ~~~~vlDvGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~D~V  103 (262)
                      +..+|||||||+|.++..++++  ..+++++|+ +++++.+++.       .+++++.+|      +.+ + ...+||+|
T Consensus        80 ~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~rv~~~~~D------~~~-~-~~~~~D~v  150 (253)
T d1tw3a2          80 NVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGD------FFE-P-LPRKADAI  150 (253)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECC------TTS-C-CSSCEEEE
T ss_pred             cCCEEEEeCCCCCHHHHHHHHhcceeEEEEccC-HHHHHHHHHHHHHhhcccchhhcccc------chh-h-cccchhhe
Confidence            5578999999999999999987  457889998 5788877642       568888776      211 1 23579999


Q ss_pred             EEccccccC-Chh--HHHHHHHHhhcCCCeEEEEEec
Q 037961          104 TIASALHWF-DLP--QFYKQVKWVLKKPSGVIAAWTY  137 (262)
Q Consensus       104 ~~~~~~~~~-d~~--~~l~~~~r~Lk~pgG~l~i~~~  137 (262)
                      ++..++|++ |.+  +++++++++|| |||+|+|...
T Consensus       151 ~~~~vlh~~~d~~~~~~L~~~~~~Lk-PGG~l~i~e~  186 (253)
T d1tw3a2         151 ILSFVLLNWPDHDAVRILTRCAEALE-PGGRILIHER  186 (253)
T ss_dssp             EEESCGGGSCHHHHHHHHHHHHHTEE-EEEEEEEEEC
T ss_pred             eeccccccCCchhhHHHHHHHHHhcC-CCcEEEEEec
Confidence            999999988 443  57999999999 9999998554

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=7.1e-16  Score=126.78  Aligned_cols=103  Identities=15%  Similarity=0.010  Sum_probs=76.0

Q ss_pred             CCCCeEEEEcCcccHhHHHHHhhC-CeEEEEcCCHHHHHHHhcC---CCceE----------------------------
Q 037961           32 PKRNLAWDVGTRSGQAAASLAQIY-QHVIATDTSPKQLKFAIKL---PNIRY----------------------------   79 (262)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~---~~~~~----------------------------   79 (262)
                      .++.+|||+|||+|..+..++..+ .+|+|+|+|+.|++.|++.   ....+                            
T Consensus        50 ~~g~~vLDlGcG~G~~~~~~~~~~~~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (257)
T d2a14a1          50 LQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRA  129 (257)
T ss_dssp             CCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCHhHHHHhccccCcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHHHHHhh
Confidence            356789999999999988887665 4799999999999999752   11111                            


Q ss_pred             -----EeCCCCchhhhhhccCCCCceeeEEEccccccC-----ChhHHHHHHHHhhcCCCeEEEEEec
Q 037961           80 -----QLTPTMSITELEQNVATQSSVDLVTIASALHWF-----DLPQFYKQVKWVLKKPSGVIAAWTY  137 (262)
Q Consensus        80 -----~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~~~~-----d~~~~l~~~~r~Lk~pgG~l~i~~~  137 (262)
                           ....  ...+....+++.++||+|++..++||+     +...+++++.++|| |||.|++..+
T Consensus       130 ~~~~~~~~~--~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~Lk-pGG~li~~~~  194 (257)
T d2a14a1         130 AVKRVLKCD--VHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLK-PGGHLVTTVT  194 (257)
T ss_dssp             HEEEEEECC--TTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEE-EEEEEEEEEE
T ss_pred             hhhcccccc--cccccccccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccC-CCcEEEEEEe
Confidence                 0000  001122235678899999999999988     34568999999999 9999998554

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=4.8e-15  Score=122.65  Aligned_cols=104  Identities=13%  Similarity=0.073  Sum_probs=74.5

Q ss_pred             CCCeEEEEcCcccHhHHHHH-hhCCeEEEEcCCHHHHHHHhcC---C--Cce----------------------------
Q 037961           33 KRNLAWDVGTRSGQAAASLA-QIYQHVIATDTSPKQLKFAIKL---P--NIR----------------------------   78 (262)
Q Consensus        33 ~~~~vlDvGcG~G~~~~~l~-~~~~~v~~vD~s~~~~~~a~~~---~--~~~----------------------------   78 (262)
                      ++.++||+|||+|..+...+ +.+.+|+|+|+|+.|++.+++.   .  ...                            
T Consensus        54 ~g~~vLDiGcG~g~~~~~~~~~~~~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (263)
T d2g72a1          54 SGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRAR  133 (263)
T ss_dssp             CCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHHH
T ss_pred             CCcEEEEeccCCCHHHHHHhcccCCeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHHHhhhh
Confidence            56899999999998876554 4577999999999999998752   0  110                            


Q ss_pred             ---EEeCCCCchhhhhhccCCCCceeeEEEccccccC--C---hhHHHHHHHHhhcCCCeEEEEEec
Q 037961           79 ---YQLTPTMSITELEQNVATQSSVDLVTIASALHWF--D---LPQFYKQVKWVLKKPSGVIAAWTY  137 (262)
Q Consensus        79 ---~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~~~~--d---~~~~l~~~~r~Lk~pgG~l~i~~~  137 (262)
                         ....|......+...+.+.++||+|++.+++||+  |   ..+++++++++|| |||.|++...
T Consensus       134 ~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~Lk-PGG~li~~~~  199 (263)
T d2g72a1         134 VKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLR-PGGHLLLIGA  199 (263)
T ss_dssp             EEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEE-EEEEEEEEEE
T ss_pred             hhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcC-CCCEEEEecc
Confidence               1111100001122233456789999999999998  3   4568999999999 9999998553

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.54  E-value=1.9e-14  Score=114.82  Aligned_cols=100  Identities=18%  Similarity=0.165  Sum_probs=73.8

Q ss_pred             CCCCeEEEEcCcccHhHHHHHhhC--CeEEEEcCCHHHHHHHhc----CCCceEEeCCCCchhhhhhccCCCCceeeEEE
Q 037961           32 PKRNLAWDVGTRSGQAAASLAQIY--QHVIATDTSPKQLKFAIK----LPNIRYQLTPTMSITELEQNVATQSSVDLVTI  105 (262)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~  105 (262)
                      +|+.+|||+|||+|..+..+++..  .+|+|+|+|+.|++.|++    ..++.++..+.   .+..........+|+|++
T Consensus        55 kpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~~ni~~i~~d~---~~~~~~~~~~~~vd~v~~  131 (209)
T d1nt2a_          55 RGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDA---SKPWKYSGIVEKVDLIYQ  131 (209)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCT---TCGGGTTTTCCCEEEEEE
T ss_pred             CCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhccCCceEEEeec---cCccccccccceEEEEEe
Confidence            588999999999999999999863  489999999999998864    47888887761   111111112233454443


Q ss_pred             ccccccCChhHHHHHHHHhhcCCCeEEEEEe
Q 037961          106 ASALHWFDLPQFYKQVKWVLKKPSGVIAAWT  136 (262)
Q Consensus       106 ~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~  136 (262)
                      . ..|+-+...++.++.++|| |||.+++..
T Consensus       132 ~-~~~~~~~~~~l~~~~~~Lk-pgG~l~i~~  160 (209)
T d1nt2a_         132 D-IAQKNQIEILKANAEFFLK-EKGEVVIMV  160 (209)
T ss_dssp             C-CCSTTHHHHHHHHHHHHEE-EEEEEEEEE
T ss_pred             c-ccChhhHHHHHHHHHHHhc-cCCeEEEEE
Confidence            2 3344578889999999999 999998844

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.53  E-value=2.5e-14  Score=114.59  Aligned_cols=101  Identities=18%  Similarity=0.160  Sum_probs=79.4

Q ss_pred             HHHHHHHhh--CCCCCeEEEEcCcccHhHHHHHhh---CCeEEEEcCCHHHHHHHhcC------CCceEEeCCCCchhhh
Q 037961           22 ELFKLIASK--TPKRNLAWDVGTRSGQAAASLAQI---YQHVIATDTSPKQLKFAIKL------PNIRYQLTPTMSITEL   90 (262)
Q Consensus        22 ~~~~~l~~~--~~~~~~vlDvGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~~   90 (262)
                      .+...+++.  ++++.+|||+|||+|..+..+++.   ..+|+++|+++.+++.|+++      .++.+..++      +
T Consensus        62 ~~~a~~l~~l~l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~d------~  135 (213)
T d1dl5a1          62 SLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGD------G  135 (213)
T ss_dssp             HHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESC------G
T ss_pred             hhhHHHHHhhhccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcccccccccCc------h
Confidence            334444444  368899999999999999999875   35799999999999999862      567777654      4


Q ss_pred             hhccCCCCceeeEEEccccccCChhHHHHHHHHhhcCCCeEEEE
Q 037961           91 EQNVATQSSVDLVTIASALHWFDLPQFYKQVKWVLKKPSGVIAA  134 (262)
Q Consensus        91 ~~~~~~~~~~D~V~~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i  134 (262)
                      ......+++||+|++..+++++.     .++.++|| |||+|++
T Consensus       136 ~~~~~~~~~fD~I~~~~~~~~~p-----~~l~~~Lk-pGG~lv~  173 (213)
T d1dl5a1         136 YYGVPEFSPYDVIFVTVGVDEVP-----ETWFTQLK-EGGRVIV  173 (213)
T ss_dssp             GGCCGGGCCEEEEEECSBBSCCC-----HHHHHHEE-EEEEEEE
T ss_pred             HHccccccchhhhhhhccHHHhH-----HHHHHhcC-CCcEEEE
Confidence            44444677899999999998873     35678899 9999987

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=99.53  E-value=1.5e-14  Score=118.14  Aligned_cols=112  Identities=14%  Similarity=0.094  Sum_probs=78.8

Q ss_pred             hCCCChHHHHHHHHhh-CCCCCeEEEEcCcccHhHHHHHhh---CCeEEEEcCCHHHHHHHhcC-------CCceEEeCC
Q 037961           15 ARPNYPKELFKLIASK-TPKRNLAWDVGTRSGQAAASLAQI---YQHVIATDTSPKQLKFAIKL-------PNIRYQLTP   83 (262)
Q Consensus        15 ~rp~yp~~~~~~l~~~-~~~~~~vlDvGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~   83 (262)
                      ..+-||+...-.+... +.++.+|||+|||+|.+|..+++.   ..+|+++|.++++++.|+++       .++++..+|
T Consensus        66 ~qiiypkD~~~Ii~~l~i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~D  145 (250)
T d1yb2a1          66 TQIISEIDASYIIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSD  145 (250)
T ss_dssp             ---------------CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSC
T ss_pred             CcccCHHHHHHHHHHcCCCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEee
Confidence            3456666544433332 368999999999999999999975   45899999999999999852       467777665


Q ss_pred             CCchhhhhhccCCCCceeeEEEccccccCChhHHHHHHHHhhcCCCeEEEEEecC
Q 037961           84 TMSITELEQNVATQSSVDLVTIASALHWFDLPQFYKQVKWVLKKPSGVIAAWTYT  138 (262)
Q Consensus        84 ~~~~~~~~~~~~~~~~~D~V~~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~~  138 (262)
                            +.+. +++++||.|+..    ..++..++.++.++|| |||+|+++...
T Consensus       146 ------i~~~-~~~~~fD~V~ld----~p~p~~~l~~~~~~LK-pGG~lv~~~P~  188 (250)
T d1yb2a1         146 ------IADF-ISDQMYDAVIAD----IPDPWNHVQKIASMMK-PGSVATFYLPN  188 (250)
T ss_dssp             ------TTTC-CCSCCEEEEEEC----CSCGGGSHHHHHHTEE-EEEEEEEEESS
T ss_pred             ------eecc-cccceeeeeeec----CCchHHHHHHHHHhcC-CCceEEEEeCC
Confidence                  3333 367889999863    2378899999999999 99999987654

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=4.5e-14  Score=113.82  Aligned_cols=101  Identities=19%  Similarity=0.213  Sum_probs=78.9

Q ss_pred             HHHHHhhCCCCCeEEEEcCcccHhHHHHHhh---CCeEEEEcCCHHHHHHHhcC-----------CCceEEeCCCCchhh
Q 037961           24 FKLIASKTPKRNLAWDVGTRSGQAAASLAQI---YQHVIATDTSPKQLKFAIKL-----------PNIRYQLTPTMSITE   89 (262)
Q Consensus        24 ~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~-----------~~~~~~~~~~~~~~~   89 (262)
                      ++.|...++++.+|||+|||+|..|..+++.   ..+|+++|+++++++.|+++           .++.+..+|      
T Consensus        67 le~L~~~l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD------  140 (224)
T d1i1na_          67 LELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGD------  140 (224)
T ss_dssp             HHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESC------
T ss_pred             HHHHhhccCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEee------
Confidence            4444445578899999999999999998875   45899999999999998752           456666654      


Q ss_pred             hhhccCCCCceeeEEEccccccCChhHHHHHHHHhhcCCCeEEEEEe
Q 037961           90 LEQNVATQSSVDLVTIASALHWFDLPQFYKQVKWVLKKPSGVIAAWT  136 (262)
Q Consensus        90 ~~~~~~~~~~~D~V~~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~  136 (262)
                      +.....+.++||.|++..+++++.     .++.+.|| |||+|++..
T Consensus       141 ~~~~~~~~~~fD~I~~~~~~~~ip-----~~l~~~Lk-pGG~LV~pv  181 (224)
T d1i1na_         141 GRMGYAEEAPYDAIHVGAAAPVVP-----QALIDQLK-PGGRLILPV  181 (224)
T ss_dssp             GGGCCGGGCCEEEEEECSBBSSCC-----HHHHHTEE-EEEEEEEEE
T ss_pred             cccccchhhhhhhhhhhcchhhcC-----HHHHhhcC-CCcEEEEEE
Confidence            444445678899999999988763     35788999 999999843

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.47  E-value=2e-13  Score=108.35  Aligned_cols=99  Identities=20%  Similarity=0.296  Sum_probs=81.1

Q ss_pred             CCCeEEEEcCcccHhHHHHHhh--CCeEEEEcCCHHHHHHHhc------CCCceEEeCCCCchhhhhhccCCCCceeeEE
Q 037961           33 KRNLAWDVGTRSGQAAASLAQI--YQHVIATDTSPKQLKFAIK------LPNIRYQLTPTMSITELEQNVATQSSVDLVT  104 (262)
Q Consensus        33 ~~~~vlDvGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~  104 (262)
                      ....|||||||+|.++..+|..  ...++|+|+++.++..|.+      ..|+.+..++...   +.+ .+++.++|.|+
T Consensus        31 ~~plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~l~Ni~~~~~da~~---l~~-~~~~~~~~~i~  106 (204)
T d1yzha1          31 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSD---LTD-YFEDGEIDRLY  106 (204)
T ss_dssp             CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSC---GGG-TSCTTCCSEEE
T ss_pred             CCCeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhccccceeeecCHHH---Hhh-hccCCceehhc
Confidence            4568999999999999999987  5679999999999998753      4789999887211   211 25788999999


Q ss_pred             EccccccCCh---------hHHHHHHHHhhcCCCeEEEEEe
Q 037961          105 IASALHWFDL---------PQFYKQVKWVLKKPSGVIAAWT  136 (262)
Q Consensus       105 ~~~~~~~~d~---------~~~l~~~~r~Lk~pgG~l~i~~  136 (262)
                      +.+.-.|...         ..+++.+.++|| |||.|.+.+
T Consensus       107 i~fPdPw~K~~h~krRl~~~~~l~~~~~~Lk-pgG~l~i~T  146 (204)
T d1yzha1         107 LNFSDPWPKKRHEKRRLTYKTFLDTFKRILP-ENGEIHFKT  146 (204)
T ss_dssp             EESCCCCCSGGGGGGSTTSHHHHHHHHHHSC-TTCEEEEEE
T ss_pred             ccccccccchhhhhhhhhHHHHHHHHHHhCC-CCcEEEEEE
Confidence            9999998832         568999999999 999998855

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=99.46  E-value=1.7e-13  Score=110.07  Aligned_cols=100  Identities=20%  Similarity=0.196  Sum_probs=78.9

Q ss_pred             HHHHHHhh--CCCCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhc----CCCceEEeCCCCchhhhhhccCC
Q 037961           23 LFKLIASK--TPKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIK----LPNIRYQLTPTMSITELEQNVAT   96 (262)
Q Consensus        23 ~~~~l~~~--~~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~----~~~~~~~~~~~~~~~~~~~~~~~   96 (262)
                      +...++..  +.++.+|||||||+|.+|..|+..+.+|+++|+++.+++.|++    ..++.+..+|      ......+
T Consensus        58 ~~a~ml~~L~l~~g~~VLdIG~GsGy~ta~La~l~~~V~aiE~~~~~~~~A~~~~~~~~nv~~~~~d------~~~g~~~  131 (224)
T d1vbfa_          58 LGIFMLDELDLHKGQKVLEIGTGIGYYTALIAEIVDKVVSVEINEKMYNYASKLLSYYNNIKLILGD------GTLGYEE  131 (224)
T ss_dssp             HHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHHHTTCSSEEEEESC------GGGCCGG
T ss_pred             hHHHHHHHhhhcccceEEEecCCCCHHHHHHHHHhcccccccccHHHHHHHHHHHhcccccccccCc------hhhcchh
Confidence            33344444  3688999999999999999999999999999999999999875    3678888776      2222224


Q ss_pred             CCceeeEEEccccccCChhHHHHHHHHhhcCCCeEEEE
Q 037961           97 QSSVDLVTIASALHWFDLPQFYKQVKWVLKKPSGVIAA  134 (262)
Q Consensus        97 ~~~~D~V~~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i  134 (262)
                      .++||.|++..+++++.     ..+.+.|| |||+|++
T Consensus       132 ~~pfD~Iiv~~a~~~ip-----~~l~~qLk-~GGrLV~  163 (224)
T d1vbfa_         132 EKPYDRVVVWATAPTLL-----CKPYEQLK-EGGIMIL  163 (224)
T ss_dssp             GCCEEEEEESSBBSSCC-----HHHHHTEE-EEEEEEE
T ss_pred             hhhHHHHHhhcchhhhh-----HHHHHhcC-CCCEEEE
Confidence            57899999988887653     34668899 9999987

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=99.46  E-value=2.1e-13  Score=112.17  Aligned_cols=96  Identities=14%  Similarity=0.083  Sum_probs=75.3

Q ss_pred             CCCCeEEEEcCcccHhHHHHHhh--CCeEEEEcCCHHHHHHHhcC-------CCceEEeCCCCchhhhhhccCCCCceee
Q 037961           32 PKRNLAWDVGTRSGQAAASLAQI--YQHVIATDTSPKQLKFAIKL-------PNIRYQLTPTMSITELEQNVATQSSVDL  102 (262)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~D~  102 (262)
                      +...+|||||||+|.++..++++  ..+++++|+ |++++.+++.       .++.+..++      +.. +. +.++|+
T Consensus        80 ~~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~~~~~~~~ri~~~~~d------~~~-~~-p~~~D~  150 (256)
T d1qzza2          80 SAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGD------FFK-PL-PVTADV  150 (256)
T ss_dssp             TTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECC------TTS-CC-SCCEEE
T ss_pred             ccCCEEEEECCCCCHHHHHHHHhhcCcEEEEecC-hHHHHHHHHHHhhcCCcceeeeeeee------ccc-cc-cccchh
Confidence            35578999999999999999997  468999998 6788877642       467777665      211 22 345999


Q ss_pred             EEEccccccCCh---hHHHHHHHHhhcCCCeEEEEEec
Q 037961          103 VTIASALHWFDL---PQFYKQVKWVLKKPSGVIAAWTY  137 (262)
Q Consensus       103 V~~~~~~~~~d~---~~~l~~~~r~Lk~pgG~l~i~~~  137 (262)
                      |++.+++|.++.   .+++++++++|| |||+|+|...
T Consensus       151 v~~~~vLh~~~d~~~~~lL~~i~~~Lk-pgG~llI~d~  187 (256)
T d1qzza2         151 VLLSFVLLNWSDEDALTILRGCVRALE-PGGRLLVLDR  187 (256)
T ss_dssp             EEEESCGGGSCHHHHHHHHHHHHHHEE-EEEEEEEEEC
T ss_pred             hhccccccccCcHHHHHHHHHHHhhcC-CcceeEEEEe
Confidence            999999998843   357999999999 9999998654

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=7.8e-14  Score=118.75  Aligned_cols=108  Identities=13%  Similarity=0.123  Sum_probs=82.4

Q ss_pred             HHHHHHHHhhC--CCCCeEEEEcCcccHhHHHHHhh-C-CeEEEEcCCHHHHHHHhc---------------CCCceEEe
Q 037961           21 KELFKLIASKT--PKRNLAWDVGTRSGQAAASLAQI-Y-QHVIATDTSPKQLKFAIK---------------LPNIRYQL   81 (262)
Q Consensus        21 ~~~~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~-~-~~v~~vD~s~~~~~~a~~---------------~~~~~~~~   81 (262)
                      ..++..+++..  +++.+|||+|||+|..+..++.. + .+++|+|+|+.|++.|++               ..++.+.+
T Consensus       137 ~~~~~~~~~~~~l~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~  216 (328)
T d1nw3a_         137 FDLVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLER  216 (328)
T ss_dssp             HHHHHHHHHHSCCCTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEE
T ss_pred             HHHHHHHHHHcCCCCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEE
Confidence            34455555554  57899999999999999999875 3 479999999999998863               25688888


Q ss_pred             CCCCchhhhhhccCCCC--ceeeEEEccccccCChhHHHHHHHHhhcCCCeEEEEE
Q 037961           82 TPTMSITELEQNVATQS--SVDLVTIASALHWFDLPQFYKQVKWVLKKPSGVIAAW  135 (262)
Q Consensus        82 ~~~~~~~~~~~~~~~~~--~~D~V~~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~  135 (262)
                      +|      +.+.++.+.  ..|+|+++...|+-+...++.++.++|| |||++++.
T Consensus       217 gd------~~~~~~~~~~~~advi~~~~~~f~~~~~~~l~e~~r~LK-pGg~iv~~  265 (328)
T d1nw3a_         217 GD------FLSEEWRERIANTSVIFVNNFAFGPEVDHQLKERFANMK-EGGRIVSS  265 (328)
T ss_dssp             CC------TTSHHHHHHHHHCSEEEECCTTTCHHHHHHHHHHHTTCC-TTCEEEES
T ss_pred             Cc------ccccccccccCcceEEEEcceecchHHHHHHHHHHHhCC-CCcEEEEe
Confidence            76      333332332  2477887766666588899999999999 99999873

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=99.45  E-value=1.1e-13  Score=114.31  Aligned_cols=111  Identities=22%  Similarity=0.195  Sum_probs=84.0

Q ss_pred             hCCCChHHHHHHHHhh--CCCCCeEEEEcCcccHhHHHHHhh---CCeEEEEcCCHHHHHHHhcC-------CCceEEeC
Q 037961           15 ARPNYPKELFKLIASK--TPKRNLAWDVGTRSGQAAASLAQI---YQHVIATDTSPKQLKFAIKL-------PNIRYQLT   82 (262)
Q Consensus        15 ~rp~yp~~~~~~l~~~--~~~~~~vlDvGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~-------~~~~~~~~   82 (262)
                      ..+-||+... .|...  +.++.+|||+|||+|.++..+++.   ..+|+++|+++++++.|+++       .++.+...
T Consensus        84 ~qiiypkd~~-~Ii~~l~i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~  162 (266)
T d1o54a_          84 TQIVYPKDSS-FIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVR  162 (266)
T ss_dssp             CCCCCHHHHH-HHHHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECC
T ss_pred             ccccchHHHH-HHHHhhCCCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEec
Confidence            4567886544 34333  369999999999999999999885   46899999999999999863       34444443


Q ss_pred             CCCchhhhhhccCCCCceeeEEEccccccCChhHHHHHHHHhhcCCCeEEEEEecC
Q 037961           83 PTMSITELEQNVATQSSVDLVTIASALHWFDLPQFYKQVKWVLKKPSGVIAAWTYT  138 (262)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~D~V~~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~~  138 (262)
                      +      +.. .++...||.|+.    +.-++..+++++.++|| |||.|+++...
T Consensus       163 d------~~~-~~~~~~~D~V~~----d~p~p~~~l~~~~~~LK-pGG~lv~~~P~  206 (266)
T d1o54a_         163 D------ISE-GFDEKDVDALFL----DVPDPWNYIDKCWEALK-GGGRFATVCPT  206 (266)
T ss_dssp             C------GGG-CCSCCSEEEEEE----CCSCGGGTHHHHHHHEE-EEEEEEEEESS
T ss_pred             c------ccc-cccccceeeeEe----cCCCHHHHHHHHHhhcC-CCCEEEEEeCc
Confidence            3      222 245677998864    33399999999999999 99999997754

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.43  E-value=1.9e-13  Score=116.44  Aligned_cols=94  Identities=21%  Similarity=0.179  Sum_probs=75.9

Q ss_pred             CCCCeEEEEcCcccHhHHHHHhhCC-eEEEEcCCHHHHHHHhc-------CCCceEEeCCCCchhhhhhccCCCCceeeE
Q 037961           32 PKRNLAWDVGTRSGQAAASLAQIYQ-HVIATDTSPKQLKFAIK-------LPNIRYQLTPTMSITELEQNVATQSSVDLV  103 (262)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~D~V  103 (262)
                      .++.+|||||||+|.+++.+++.|+ +|+|+|.|+ +++.|++       ..++.++.++      ++++++++++||+|
T Consensus        37 ~~~~~VLDlGcGtG~ls~~aa~~Ga~~V~avd~s~-~~~~a~~~~~~~~~~~~i~~i~~~------~~~l~~~~~~~D~i  109 (328)
T d1g6q1_          37 FKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSS-IIEMAKELVELNGFSDKITLLRGK------LEDVHLPFPKVDII  109 (328)
T ss_dssp             HTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESC------TTTSCCSSSCEEEE
T ss_pred             CCcCEEEEeCCCCCHHHHHHHHhCCCEEEEEeCCH-HHHHHHHHHHHhCccccceEEEee------hhhccCcccceeEE
Confidence            3678999999999999999999985 799999996 5555553       2567777764      66677788999999


Q ss_pred             EEccccccC----ChhHHHHHHHHhhcCCCeEEE
Q 037961          104 TIASALHWF----DLPQFYKQVKWVLKKPSGVIA  133 (262)
Q Consensus       104 ~~~~~~~~~----d~~~~l~~~~r~Lk~pgG~l~  133 (262)
                      ++....+.+    ..+.++..+.|+|| |||.++
T Consensus       110 ~se~~~~~~~~e~~~~~~~~a~~r~Lk-pgG~ii  142 (328)
T d1g6q1_         110 ISEWMGYFLLYESMMDTVLYARDHYLV-EGGLIF  142 (328)
T ss_dssp             EECCCBTTBSTTCCHHHHHHHHHHHEE-EEEEEE
T ss_pred             EEEecceeeccchhHHHHHHHHHhccC-CCeEEE
Confidence            997776655    45668888999999 999986

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.43  E-value=3.7e-13  Score=108.37  Aligned_cols=118  Identities=20%  Similarity=0.172  Sum_probs=86.8

Q ss_pred             HHhhCCCChHHHHHHHHhhC-----CCCCeEEEEcCcccHhHHHHHhh---CCeEEEEcCCHHHHHHHhc----CCCceE
Q 037961           12 YAVARPNYPKELFKLIASKT-----PKRNLAWDVGTRSGQAAASLAQI---YQHVIATDTSPKQLKFAIK----LPNIRY   79 (262)
Q Consensus        12 Y~~~rp~yp~~~~~~l~~~~-----~~~~~vlDvGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~----~~~~~~   79 (262)
                      |..+-|.+ .++...|+.-+     +++.+|||+|||+|..+..+++.   ..+|+|+|+|+.|++.+++    ..++..
T Consensus        48 ~R~w~p~r-SKlaa~i~~~l~~l~i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~~~~~~  126 (227)
T d1g8aa_          48 YRIWNPNR-SKLGAAIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVP  126 (227)
T ss_dssp             EEECCTTT-CHHHHHHHTTCCCCCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEE
T ss_pred             EEEECCCc-cHHHHHHHccccccccCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhcCCceE
Confidence            44455654 45555554432     48999999999999999999986   3589999999999998864    356777


Q ss_pred             EeCCCCchhhhhhccCCCCceeeEEEccccccC-ChhHHHHHHHHhhcCCCeEEEEEe
Q 037961           80 QLTPTMSITELEQNVATQSSVDLVTIASALHWF-DLPQFYKQVKWVLKKPSGVIAAWT  136 (262)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~~~~-d~~~~l~~~~r~Lk~pgG~l~i~~  136 (262)
                      +..+.   .+.+..+.....+|+|++.  +++. +...+++++.+.|| |||.+++..
T Consensus       127 i~~d~---~~~~~~~~~~~~vD~i~~d--~~~~~~~~~~l~~~~~~Lk-pgG~lvi~~  178 (227)
T d1g8aa_         127 ILGDA---TKPEEYRALVPKVDVIFED--VAQPTQAKILIDNAEVYLK-RGGYGMIAV  178 (227)
T ss_dssp             EECCT---TCGGGGTTTCCCEEEEEEC--CCSTTHHHHHHHHHHHHEE-EEEEEEEEE
T ss_pred             EEEEC---CCcccccccccceEEEEEE--ccccchHHHHHHHHHHhcc-cCCeEEEEE
Confidence            76661   2234444456778988764  3344 66779999999999 999998844

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=6.4e-13  Score=112.35  Aligned_cols=113  Identities=16%  Similarity=0.201  Sum_probs=82.8

Q ss_pred             CCCChHHHHHHHHhh-CCCCCeEEEEcCcccHhHHHHHhh---CCeEEEEcCCHHHHHHHhcC-----------------
Q 037961           16 RPNYPKELFKLIASK-TPKRNLAWDVGTRSGQAAASLAQI---YQHVIATDTSPKQLKFAIKL-----------------   74 (262)
Q Consensus        16 rp~yp~~~~~~l~~~-~~~~~~vlDvGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~-----------------   74 (262)
                      .+-||+...-.+... +.++.+|||+|||+|.+|..|++.   ..+|+++|+++++++.|+++                 
T Consensus        80 qiiypkD~~~Il~~l~i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~  159 (324)
T d2b25a1          80 AITFPKDINMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWP  159 (324)
T ss_dssp             CCCCHHHHHHHHHHHTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCC
T ss_pred             cccccccHHHHHHHhCCCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccc
Confidence            457888765544433 479999999999999999999985   35899999999999998752                 


Q ss_pred             CCceEEeCCCCchhhhhhc--cCCCCceeeEEEccccccCChhHHHHHHHHhhcCCCeEEEEEecCC
Q 037961           75 PNIRYQLTPTMSITELEQN--VATQSSVDLVTIASALHWFDLPQFYKQVKWVLKKPSGVIAAWTYTM  139 (262)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~--~~~~~~~D~V~~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~~~  139 (262)
                      .++.+..+|      +...  .+++.+||.|+..    --+|..++.++.++|| |||.|+++...-
T Consensus       160 ~nv~~~~~d------i~~~~~~~~~~~fD~V~LD----~p~P~~~l~~~~~~LK-pGG~lv~~~P~i  215 (324)
T d2b25a1         160 DNVDFIHKD------ISGATEDIKSLTFDAVALD----MLNPHVTLPVFYPHLK-HGGVCAVYVVNI  215 (324)
T ss_dssp             CCEEEEESC------TTCCC-------EEEEEEC----SSSTTTTHHHHGGGEE-EEEEEEEEESSH
T ss_pred             cceeEEecc------hhhcccccCCCCcceEeec----CcCHHHHHHHHHHhcc-CCCEEEEEeCCH
Confidence            356677665      2222  2356789999853    2266789999999999 999999977443

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=5.7e-13  Score=112.55  Aligned_cols=95  Identities=17%  Similarity=0.077  Sum_probs=76.4

Q ss_pred             CCCCeEEEEcCcccHhHHHHHhhCC-eEEEEcCCHHHHHHHhc------CCCceEEeCCCCchhhhhhccCCCCceeeEE
Q 037961           32 PKRNLAWDVGTRSGQAAASLAQIYQ-HVIATDTSPKQLKFAIK------LPNIRYQLTPTMSITELEQNVATQSSVDLVT  104 (262)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~  104 (262)
                      .++.+|||||||+|.++..+++.|+ +|+|+|.|+.|...++.      ..++.++.++      +++++.+..+||+|+
T Consensus        34 ~~~~~VLDiGcG~G~lsl~aa~~Ga~~V~aid~s~~~~~a~~~~~~~~~~~~i~~~~~~------~~~l~~~~~~~D~Iv  107 (311)
T d2fyta1          34 FKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGK------IEEVHLPVEKVDVII  107 (311)
T ss_dssp             TTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESC------TTTSCCSCSCEEEEE
T ss_pred             CCcCEEEEECCCCCHHHHHHHHcCCCEEEEEeCHHHHHHHHHHHHHhCCCccceEEEee------HHHhcCccccceEEE
Confidence            3678999999999999999999985 79999999988754432      2567888764      666777888999999


Q ss_pred             EccccccCC----hhHHHHHHHHhhcCCCeEEE
Q 037961          105 IASALHWFD----LPQFYKQVKWVLKKPSGVIA  133 (262)
Q Consensus       105 ~~~~~~~~d----~~~~l~~~~r~Lk~pgG~l~  133 (262)
                      +....|...    .+.++....++|| |||.++
T Consensus       108 se~~~~~~~~e~~~~~~~~a~~~~Lk-p~G~ii  139 (311)
T d2fyta1         108 SEWMGYFLLFESMLDSVLYAKNKYLA-KGGSVY  139 (311)
T ss_dssp             ECCCBTTBTTTCHHHHHHHHHHHHEE-EEEEEE
T ss_pred             EeeeeeecccccccHHHHHHHHhcCC-CCcEEe
Confidence            987777663    3356777789999 999987

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.40  E-value=4.1e-13  Score=113.69  Aligned_cols=94  Identities=18%  Similarity=0.090  Sum_probs=75.7

Q ss_pred             CCCeEEEEcCcccHhHHHHHhhCC-eEEEEcCCHHHHHHHhc------CCCceEEeCCCCchhhhhhccCCCCceeeEEE
Q 037961           33 KRNLAWDVGTRSGQAAASLAQIYQ-HVIATDTSPKQLKFAIK------LPNIRYQLTPTMSITELEQNVATQSSVDLVTI  105 (262)
Q Consensus        33 ~~~~vlDvGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~  105 (262)
                      ++.+|||||||+|.++..+++.|+ +|+|+|.|+.+....+.      ..++.++.++      +++++++.++||+|++
T Consensus        33 ~~~~VLDiGcG~G~ls~~aa~~Ga~~V~avd~s~~~~~a~~~~~~n~~~~~v~~~~~~------~~~~~~~~~~~D~ivs  106 (316)
T d1oria_          33 KDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSISDYAVKIVKANKLDHVVTIIKGK------VEEVELPVEKVDIIIS  106 (316)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTTHHHHHHHHHHTTCTTTEEEEESC------TTTCCCSSSCEEEEEE
T ss_pred             CcCEEEEEecCCcHHHHHHHHhCCCEEEEEcCcHHHhhhhhHHHHhCCccccceEecc------HHHcccccceeEEEee
Confidence            678899999999999999999885 79999999865433321      1457887764      6667778889999999


Q ss_pred             ccccccC----ChhHHHHHHHHhhcCCCeEEE
Q 037961          106 ASALHWF----DLPQFYKQVKWVLKKPSGVIA  133 (262)
Q Consensus       106 ~~~~~~~----d~~~~l~~~~r~Lk~pgG~l~  133 (262)
                      ....+.+    ..+.++..+.++|| |||.++
T Consensus       107 ~~~~~~l~~e~~~~~~l~~~~r~Lk-p~G~ii  137 (316)
T d1oria_         107 EWMGYCLFYESMLNTVLHARDKWLA-PDGLIF  137 (316)
T ss_dssp             CCCBBTBTBTCCHHHHHHHHHHHEE-EEEEEE
T ss_pred             eeeeeeeccHHHHHHHHHHHHhcCC-CCeEEE
Confidence            8777665    35678999999999 999987

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=99.37  E-value=7.8e-13  Score=102.04  Aligned_cols=115  Identities=18%  Similarity=0.249  Sum_probs=84.7

Q ss_pred             hCCCCh---HHHHHHHHhhCCCCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhcC-----CCceEEeCCCCc
Q 037961           15 ARPNYP---KELFKLIASKTPKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKL-----PNIRYQLTPTMS   86 (262)
Q Consensus        15 ~rp~yp---~~~~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~-----~~~~~~~~~~~~   86 (262)
                      .||.--   +.++++|....+++.+|||+|||+|..+..++.+|++++++|.|+.+++.++++     .+.++...+   
T Consensus        20 ~Rpt~~~v~e~lf~~l~~~~~~g~~vLDl~~G~G~~~i~a~~~ga~vv~vD~~~~a~~~~~~N~~~~~~~~~v~~~~---   96 (171)
T d1ws6a1          20 ARPSPVRLRKALFDYLRLRYPRRGRFLDPFAGSGAVGLEAASEGWEAVLVEKDPEAVRLLKENVRRTGLGARVVALP---   96 (171)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCTTCCEEEEETCSSCHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHHHTCCCEEECSC---
T ss_pred             CCCCcHHHHHHHHHHhhccccCCCeEEEeccccchhhhhhhhccchhhhcccCHHHHhhhhHHHHhhccccceeeee---
Confidence            477553   467888888888889999999999999999999999999999999999998863     222344333   


Q ss_pred             hhhh--hhccCCCCceeeEEEccccccCChhHHHHHHH--HhhcCCCeEEEEE
Q 037961           87 ITEL--EQNVATQSSVDLVTIASALHWFDLPQFYKQVK--WVLKKPSGVIAAW  135 (262)
Q Consensus        87 ~~~~--~~~~~~~~~~D~V~~~~~~~~~d~~~~l~~~~--r~Lk~pgG~l~i~  135 (262)
                       .+.  ........+||+|++...++. +..+.+.++.  .+|+ |||.+++-
T Consensus        97 -~d~~~~~~~~~~~~fD~If~DPPY~~-~~~~~l~~l~~~~ll~-~~g~ivie  146 (171)
T d1ws6a1          97 -VEVFLPEAKAQGERFTVAFMAPPYAM-DLAALFGELLASGLVE-AGGLYVLQ  146 (171)
T ss_dssp             -HHHHHHHHHHTTCCEEEEEECCCTTS-CTTHHHHHHHHHTCEE-EEEEEEEE
T ss_pred             -hhcccccccccCCccceeEEcccccc-CHHHHHHHHHHcCCcC-CCeEEEEE
Confidence             121  122235678999999887664 4445555543  4789 99988873

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.35  E-value=6.5e-13  Score=115.21  Aligned_cols=109  Identities=12%  Similarity=0.102  Sum_probs=76.4

Q ss_pred             HHHHHHHhhC--CCCCeEEEEcCcccHhHHHHHhh-C-CeEEEEcCCHHHHHHHhcC---------------CCceEE-e
Q 037961           22 ELFKLIASKT--PKRNLAWDVGTRSGQAAASLAQI-Y-QHVIATDTSPKQLKFAIKL---------------PNIRYQ-L   81 (262)
Q Consensus        22 ~~~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~-~-~~v~~vD~s~~~~~~a~~~---------------~~~~~~-~   81 (262)
                      .++..+++.+  +++.++||||||+|..+..++.. + .+|+|||+|+.|++.|++.               ..+.+. .
T Consensus       203 ~~i~~Il~~l~Lkpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~  282 (406)
T d1u2za_         203 NFLSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLK  282 (406)
T ss_dssp             HHHHHHHHHTTCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEES
T ss_pred             HHHHHHHHHhCCCCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeeee
Confidence            3455555554  68899999999999999999876 4 5899999999999999752               112221 1


Q ss_pred             CCCCchhhhhhccCCCCceeeEEEccccccCChhHHHHHHHHhhcCCCeEEEE
Q 037961           82 TPTMSITELEQNVATQSSVDLVTIASALHWFDLPQFYKQVKWVLKKPSGVIAA  134 (262)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~D~V~~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i  134 (262)
                      ++... .+..+.  .-..+|+|+++..+|+-+...++.++.++|| |||.|++
T Consensus       283 ~~f~~-~~~~d~--~~~~adVV~inn~~f~~~l~~~L~ei~r~LK-PGGrIVs  331 (406)
T d1u2za_         283 KSFVD-NNRVAE--LIPQCDVILVNNFLFDEDLNKKVEKILQTAK-VGCKIIS  331 (406)
T ss_dssp             SCSTT-CHHHHH--HGGGCSEEEECCTTCCHHHHHHHHHHHTTCC-TTCEEEE
T ss_pred             echhh-cccccc--ccccceEEEEecccCchHHHHHHHHHHHhcC-CCcEEEE
Confidence            21100 011111  1134788888765555588899999999999 9999987

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.30  E-value=5.8e-12  Score=106.78  Aligned_cols=123  Identities=15%  Similarity=0.106  Sum_probs=88.7

Q ss_pred             HHHHHhhCCCCCeEEEEcCcccHhHHHHHhhCC-eEEEEcCCHHHHHHHhcC-------CCceEEeCCCCchhhhhhccC
Q 037961           24 FKLIASKTPKRNLAWDVGTRSGQAAASLAQIYQ-HVIATDTSPKQLKFAIKL-------PNIRYQLTPTMSITELEQNVA   95 (262)
Q Consensus        24 ~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~~~~~~~   95 (262)
                      ..++.....++.+|||+|||+|.++..++..|+ +|+++|+|+.+++.++++       .++++..+|.+  .....+..
T Consensus       136 r~~~~~~~~~g~~VLDl~~g~G~~si~~a~~ga~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~--~~~~~~~~  213 (324)
T d2as0a2         136 RLALEKWVQPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAF--EEMEKLQK  213 (324)
T ss_dssp             HHHHGGGCCTTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHH--HHHHHHHH
T ss_pred             HHHHHhhcCCCCeeecccCcccchhhhhhhcCCcEEEeecCCHHHHHHHHHHHHHcCCCccceeeechhh--hhhHHHHh
Confidence            456666778899999999999999999998875 799999999999999863       35677777621  11222333


Q ss_pred             CCCceeeEEEccccccC----------ChhHHHHHHHHhhcCCCeEEEEEecCCCcccHHHHHh
Q 037961           96 TQSSVDLVTIASALHWF----------DLPQFYKQVKWVLKKPSGVIAAWTYTMPEINESVGAV  149 (262)
Q Consensus        96 ~~~~~D~V~~~~~~~~~----------d~~~~l~~~~r~Lk~pgG~l~i~~~~~~~~~~~~~~~  149 (262)
                      ...+||+|++.....-.          +...++..+.++|+ |||.|+.++++...-.+.+.++
T Consensus       214 ~~~~fD~Vi~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~-pGG~lv~~s~s~~~~~~~f~~~  276 (324)
T d2as0a2         214 KGEKFDIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVK-DGGILVTCSCSQHVDLQMFKDM  276 (324)
T ss_dssp             TTCCEEEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEE-EEEEEEEEECCTTSCHHHHHHH
T ss_pred             ccCCCCchhcCCccccCCHHHHHHHHHHHHHHHHHHHHHcC-CCcEEEEEeCCccCCHHHHHHH
Confidence            56789999986554322          12347788899999 9999998776653323444443

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=99.30  E-value=2.1e-12  Score=109.21  Aligned_cols=116  Identities=21%  Similarity=0.175  Sum_probs=84.7

Q ss_pred             CCCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhcC------CCceEEeCCCCchhhhhhccCCCCceeeEEE
Q 037961           32 PKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKL------PNIRYQLTPTMSITELEQNVATQSSVDLVTI  105 (262)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~  105 (262)
                      .++.+|||++||+|.++..++..+.+|+++|+|+.+++.|+++      .+++++.+|.+..  ...+.-..++||+|++
T Consensus       144 ~~g~rVLDl~~gtG~~s~~~a~g~~~V~~vD~s~~al~~a~~n~~~ngl~~~~~i~~d~~~~--~~~~~~~~~~fD~Vi~  221 (318)
T d1wxxa2         144 FRGERALDVFSYAGGFALHLALGFREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDL--LRRLEKEGERFDLVVL  221 (318)
T ss_dssp             CCEEEEEEETCTTTHHHHHHHHHEEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHH--HHHHHHTTCCEEEEEE
T ss_pred             hCCCeeeccCCCCcHHHHHHHhcCCcEEeecchHHHHHHHHHHHHHcCCCCcceeeccHHHH--hhhhHhhhcCCCEEEE
Confidence            3678999999999999999988888999999999999999853      5678888762111  1223335678999998


Q ss_pred             ccccccC----------ChhHHHHHHHHhhcCCCeEEEEEecCCCcccHHHHHhh
Q 037961          106 ASALHWF----------DLPQFYKQVKWVLKKPSGVIAAWTYTMPEINESVGAVF  150 (262)
Q Consensus       106 ~~~~~~~----------d~~~~l~~~~r~Lk~pgG~l~i~~~~~~~~~~~~~~~~  150 (262)
                      .....-.          +...++..+.++|+ |||.|++.+++.......+.++.
T Consensus       222 DpP~~~~~~~~~~~~~~~~~~l~~~a~~lLk-pGG~Lv~~scs~~~~~~~f~~~v  275 (318)
T d1wxxa2         222 DPPAFAKGKKDVERAYRAYKEVNLRAIKLLK-EGGILATASCSHHMTEPLFYAMV  275 (318)
T ss_dssp             CCCCSCCSTTSHHHHHHHHHHHHHHHHHTEE-EEEEEEEEECCTTSCHHHHHHHH
T ss_pred             cCCccccchHHHHHHHHHHHHHHHHHHHHcC-CCCEEEEEeCCcccCHHHHHHHH
Confidence            7543211          23347788999999 99999987776543334444444

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.29  E-value=3.8e-12  Score=102.15  Aligned_cols=100  Identities=9%  Similarity=0.069  Sum_probs=76.5

Q ss_pred             HHHHHhhCCCCCeEEEEcCcccHhHHHHHhh----C----CeEEEEcCCHHHHHHHhcC-----------CCceEEeCCC
Q 037961           24 FKLIASKTPKRNLAWDVGTRSGQAAASLAQI----Y----QHVIATDTSPKQLKFAIKL-----------PNIRYQLTPT   84 (262)
Q Consensus        24 ~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~----~----~~v~~vD~s~~~~~~a~~~-----------~~~~~~~~~~   84 (262)
                      ++.|...+.++.+|||||||+|..|..+++.    +    .+|+++|.++++++.|+++           .++.+..+| 
T Consensus        71 l~~L~~~l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~~d-  149 (223)
T d1r18a_          71 LEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGD-  149 (223)
T ss_dssp             HHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESC-
T ss_pred             HHHHhhccCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEEecc-
Confidence            3333334578899999999999999988764    2    4899999999999988652           478888776 


Q ss_pred             CchhhhhhccCCCCceeeEEEccccccCChhHHHHHHHHhhcCCCeEEEEE
Q 037961           85 MSITELEQNVATQSSVDLVTIASALHWFDLPQFYKQVKWVLKKPSGVIAAW  135 (262)
Q Consensus        85 ~~~~~~~~~~~~~~~~D~V~~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~  135 (262)
                           ......+.++||.|++..++..+.     ..+.+.|| |||++++.
T Consensus       150 -----~~~~~~~~~~fD~Iiv~~a~~~~p-----~~l~~~Lk-~gG~lV~p  189 (223)
T d1r18a_         150 -----GRKGYPPNAPYNAIHVGAAAPDTP-----TELINQLA-SGGRLIVP  189 (223)
T ss_dssp             -----GGGCCGGGCSEEEEEECSCBSSCC-----HHHHHTEE-EEEEEEEE
T ss_pred             -----cccccccccceeeEEEEeechhch-----HHHHHhcC-CCcEEEEE
Confidence                 333233567899999998887553     24678999 99999883

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.24  E-value=7.8e-12  Score=94.44  Aligned_cols=107  Identities=11%  Similarity=0.034  Sum_probs=78.9

Q ss_pred             HHHHHHHHhhCCCCCeEEEEcCcccHhHHHHHhhCC-eEEEEcCCHHHHHHHhcC-------CCceEEeCCCCchhhhhh
Q 037961           21 KELFKLIASKTPKRNLAWDVGTRSGQAAASLAQIYQ-HVIATDTSPKQLKFAIKL-------PNIRYQLTPTMSITELEQ   92 (262)
Q Consensus        21 ~~~~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~~~~   92 (262)
                      +.++++|.... ++.+|||+|||+|.++...+.+|+ +|+++|.++.+++.++++       .+++++++|      +..
T Consensus         3 e~~fn~l~~~~-~g~~vlDl~~GtG~~~iea~~rga~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D------~~~   75 (152)
T d2esra1           3 GAIFNMIGPYF-NGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKME------AER   75 (152)
T ss_dssp             HHHHHHHCSCC-CSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSC------HHH
T ss_pred             HHHHHHHHhhC-CCCeEEEcCCccCHHHHHHHHhCcceeeeehhchhhhhhhhhhhhhcccccchhhhccc------ccc
Confidence            46677776654 567899999999999999888875 899999999999988752       457777766      222


Q ss_pred             -ccCCCCceeeEEEccccccCChhHHHHHHH--HhhcCCCeEEEEE
Q 037961           93 -NVATQSSVDLVTIASALHWFDLPQFYKQVK--WVLKKPSGVIAAW  135 (262)
Q Consensus        93 -~~~~~~~~D~V~~~~~~~~~d~~~~l~~~~--r~Lk~pgG~l~i~  135 (262)
                       +....++||+|++......-.....+..+.  ++|+ |||.+++-
T Consensus        76 ~l~~~~~~fDiIf~DPPy~~~~~~~~l~~i~~~~~L~-~~g~iiiE  120 (152)
T d2esra1          76 AIDCLTGRFDLVFLDPPYAKETIVATIEALAAKNLLS-EQVMVVCE  120 (152)
T ss_dssp             HHHHBCSCEEEEEECCSSHHHHHHHHHHHHHHTTCEE-EEEEEEEE
T ss_pred             cccccccccceeEechhhccchHHHHHHHHHHCCCcC-CCeEEEEE
Confidence             223567899999876644333445566554  5699 99999883

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.24  E-value=1.7e-11  Score=97.52  Aligned_cols=92  Identities=20%  Similarity=0.232  Sum_probs=74.4

Q ss_pred             CCCCCeEEEEcCcccHhHHHHHhh-CCeEEEEcCCHHHHHHHhc------CCCceEEeCCCCchhhhhhccCCCCceeeE
Q 037961           31 TPKRNLAWDVGTRSGQAAASLAQI-YQHVIATDTSPKQLKFAIK------LPNIRYQLTPTMSITELEQNVATQSSVDLV  103 (262)
Q Consensus        31 ~~~~~~vlDvGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~D~V  103 (262)
                      +.++.+|||||||+|..+..++.. +.+|+++|.++.+++.|++      ..++.+..+|      ...-....++||.|
T Consensus        76 l~~g~~VLeIGsGsGY~taila~l~g~~V~~ie~~~~l~~~a~~~l~~~g~~nv~~~~gd------~~~g~~~~~pfD~I  149 (215)
T d1jg1a_          76 LKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVKNVHVILGD------GSKGFPPKAPYDVI  149 (215)
T ss_dssp             CCTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESC------GGGCCGGGCCEEEE
T ss_pred             cCccceEEEecCCCChhHHHHHHhhCceeEEEeccHHHHHHHHHHHHHcCCceeEEEECc------cccCCcccCcceeE
Confidence            368889999999999999999886 6789999999999999885      3788898876      22322357889999


Q ss_pred             EEccccccCChhHHHHHHHHhhcCCCeEEEE
Q 037961          104 TIASALHWFDLPQFYKQVKWVLKKPSGVIAA  134 (262)
Q Consensus       104 ~~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i  134 (262)
                      ++..++..+ |+.    +.+.|+ |||+|++
T Consensus       150 iv~~a~~~i-p~~----l~~qL~-~gGrLv~  174 (215)
T d1jg1a_         150 IVTAGAPKI-PEP----LIEQLK-IGGKLII  174 (215)
T ss_dssp             EECSBBSSC-CHH----HHHTEE-EEEEEEE
T ss_pred             EeecccccC-CHH----HHHhcC-CCCEEEE
Confidence            999888754 222    556799 9999987

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=99.22  E-value=3.9e-11  Score=98.81  Aligned_cols=106  Identities=17%  Similarity=0.183  Sum_probs=80.6

Q ss_pred             HHHHHHHHhhC-CCCCeEEEEcCcccHhHHHHHhh--CCeEEEEcCCHHHHHHHhcC------CCceEEeCCCCchhhhh
Q 037961           21 KELFKLIASKT-PKRNLAWDVGTRSGQAAASLAQI--YQHVIATDTSPKQLKFAIKL------PNIRYQLTPTMSITELE   91 (262)
Q Consensus        21 ~~~~~~l~~~~-~~~~~vlDvGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~~~   91 (262)
                      +.+++..+... ....+|||+|||+|..+..++..  ..+|+++|+|+..++.|+++      .++.+..+|-     ++
T Consensus        95 E~lv~~~l~~~~~~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~Na~~~~~~~v~~~~~d~-----~~  169 (274)
T d2b3ta1          95 ECLVEQALARLPEQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDW-----FS  169 (274)
T ss_dssp             HHHHHHHHHHSCSSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCST-----TG
T ss_pred             hhhhhhHhhhhcccccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHHHHHHHhCcccceeeeccc-----cc
Confidence            55677666655 45677999999999999999875  46999999999999999863      5688888762     11


Q ss_pred             hccCCCCceeeEEEccccccC------------C--------------hhHHHHHHHHhhcCCCeEEEE
Q 037961           92 QNVATQSSVDLVTIASALHWF------------D--------------LPQFYKQVKWVLKKPSGVIAA  134 (262)
Q Consensus        92 ~~~~~~~~~D~V~~~~~~~~~------------d--------------~~~~l~~~~r~Lk~pgG~l~i  134 (262)
                        ++++.+||+|+|+...--.            +              ..++++++.+.|+ |||.+++
T Consensus       170 --~~~~~~fDlIvsNPPYi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~-~~G~l~l  235 (274)
T d2b3ta1         170 --ALAGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALV-SGGFLLL  235 (274)
T ss_dssp             --GGTTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEE-EEEEEEE
T ss_pred             --ccCCCceeEEEecchhhhhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcC-CCCEEEE
Confidence              2356799999998554211            1              2347788899999 9999998

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.21  E-value=3.1e-11  Score=94.43  Aligned_cols=120  Identities=15%  Similarity=0.223  Sum_probs=91.9

Q ss_pred             hhCCCChHHHHHHHHhhCCCCCeEEEEcCcccHhHHHHHhh--CCeEEEEcCCHHHHHHHhcC-----CCceEEeCCCCc
Q 037961           14 VARPNYPKELFKLIASKTPKRNLAWDVGTRSGQAAASLAQI--YQHVIATDTSPKQLKFAIKL-----PNIRYQLTPTMS   86 (262)
Q Consensus        14 ~~rp~yp~~~~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~-----~~~~~~~~~~~~   86 (262)
                      +|-|...+++++.+.  ..++..+||++||+|..|..+++.  ..+|+|+|.++.|++.|++.     .++.++.++   
T Consensus         6 ~H~pVll~evi~~l~--~~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~~~r~~~~~~~---   80 (192)
T d1m6ya2           6 RHIPVMVREVIEFLK--PEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVS---   80 (192)
T ss_dssp             SCCCTTHHHHHHHHC--CCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECC---
T ss_pred             CCCchHHHHHHHhhC--CCCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhccccccccchhHH---
Confidence            467888888888774  357789999999999999999886  57899999999999999852     467888776   


Q ss_pred             hhhhhhc--cCCCCceeeEEEcccc---------ccC-ChhHHHHHHHHhhcCCCeEEEEEecCC
Q 037961           87 ITELEQN--VATQSSVDLVTIASAL---------HWF-DLPQFYKQVKWVLKKPSGVIAAWTYTM  139 (262)
Q Consensus        87 ~~~~~~~--~~~~~~~D~V~~~~~~---------~~~-d~~~~l~~~~r~Lk~pgG~l~i~~~~~  139 (262)
                      +.++...  .+..++||.|+...++         .-+ ....++..+.++|+ |||.+++.++..
T Consensus        81 f~~~~~~~~~~~~~~vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk-~gG~l~ii~f~s  144 (192)
T d1m6ya2          81 YREADFLLKTLGIEKVDGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLN-PGGRIVVISFHS  144 (192)
T ss_dssp             GGGHHHHHHHTTCSCEEEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEE-EEEEEEEEESSH
T ss_pred             HhhHHHHHHHcCCCCcceeeeccchhHhhhhhhhccchhHHHHHHHHHHhcC-CCCeeeeecccc
Confidence            1122211  2346789999987665         223 45568999999999 999999877653

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.19  E-value=4e-11  Score=98.26  Aligned_cols=102  Identities=15%  Similarity=0.129  Sum_probs=80.2

Q ss_pred             HHHHhhCCCCCeEEEEcCcccHhHHHHHhhC-CeEEEEcCCHHHHHHHhcC-------CCceEEeCCCCchhhhhhccCC
Q 037961           25 KLIASKTPKRNLAWDVGTRSGQAAASLAQIY-QHVIATDTSPKQLKFAIKL-------PNIRYQLTPTMSITELEQNVAT   96 (262)
Q Consensus        25 ~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~~~~~~~~   96 (262)
                      ..+....+++.+|||+|||+|.++..++.++ ++|+++|+|+.+++.++++       ..+++.++|      +..+. .
T Consensus        99 ~ri~~~~~~g~~VlD~~aG~G~~~l~~a~~~~~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D------~~~~~-~  171 (260)
T d2frna1          99 VRMAKVAKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMD------NRDFP-G  171 (260)
T ss_dssp             HHHHHHCCTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSC------TTTCC-C
T ss_pred             HHHHhhcCCccEEEECcceEcHHHHHHHHhCCcEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcc------hHHhc-c
Confidence            3466667899999999999999999999887 5999999999999998852       357777766      33332 4


Q ss_pred             CCceeeEEEccccccCChhHHHHHHHHhhcCCCeEEEEEec
Q 037961           97 QSSVDLVTIASALHWFDLPQFYKQVKWVLKKPSGVIAAWTY  137 (262)
Q Consensus        97 ~~~~D~V~~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~  137 (262)
                      .+.||.|+++..-   ....++.++.++|+ +||++.+...
T Consensus       172 ~~~~D~Ii~~~p~---~~~~~l~~a~~~l~-~gG~lh~~~~  208 (260)
T d2frna1         172 ENIADRILMGYVV---RTHEFIPKALSIAK-DGAIIHYHNT  208 (260)
T ss_dssp             CSCEEEEEECCCS---SGGGGHHHHHHHEE-EEEEEEEEEE
T ss_pred             CCCCCEEEECCCC---chHHHHHHHHhhcC-CCCEEEEEec
Confidence            6789999976432   34568889999999 9999977443

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.18  E-value=3.5e-11  Score=94.29  Aligned_cols=70  Identities=16%  Similarity=0.162  Sum_probs=57.6

Q ss_pred             CCCeEEEEcCcccHhHHHHHhhCC-eEEEEcCCHHHHHHHhcC-CCceEEeCCCCchhhhhhccCCCCceeeEEEccccc
Q 037961           33 KRNLAWDVGTRSGQAAASLAQIYQ-HVIATDTSPKQLKFAIKL-PNIRYQLTPTMSITELEQNVATQSSVDLVTIASALH  110 (262)
Q Consensus        33 ~~~~vlDvGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~~  110 (262)
                      .+.+|||+|||+|.++..++..|+ +|+|+|+++.+++.|+++ .++++.++|      +.++   +++||+|+++..+.
T Consensus        48 ~Gk~VLDlGcGtG~l~i~a~~~ga~~V~~vDid~~a~~~ar~N~~~~~~~~~D------~~~l---~~~fD~Vi~NPPfg  118 (197)
T d1ne2a_          48 GGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCGGVNFMVAD------VSEI---SGKYDTWIMNPPFG  118 (197)
T ss_dssp             BTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCTTSEEEECC------GGGC---CCCEEEEEECCCC-
T ss_pred             CCCEEEEeCCCCcHHHHHHHHcCCCcccccccCHHHHHHHHHccccccEEEEe------hhhc---CCcceEEEeCcccc
Confidence            678999999999999998888875 699999999999999874 678888876      3333   46899999998875


Q ss_pred             c
Q 037961          111 W  111 (262)
Q Consensus       111 ~  111 (262)
                      .
T Consensus       119 ~  119 (197)
T d1ne2a_         119 S  119 (197)
T ss_dssp             -
T ss_pred             h
Confidence            3

>d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Chemotaxis receptor methyltransferase CheR, C-terminal domain
domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.16  E-value=1.5e-10  Score=90.66  Aligned_cols=102  Identities=21%  Similarity=0.291  Sum_probs=68.0

Q ss_pred             CCCCeEEEEcCcccHh----HHHHHhh----C--CeEEEEcCCHHHHHHHhcC-------CC------------------
Q 037961           32 PKRNLAWDVGTRSGQA----AASLAQI----Y--QHVIATDTSPKQLKFAIKL-------PN------------------   76 (262)
Q Consensus        32 ~~~~~vlDvGcG~G~~----~~~l~~~----~--~~v~~vD~s~~~~~~a~~~-------~~------------------   76 (262)
                      .+.-+||++|||||.-    +..+...    .  .+|+|+|+|+.+++.|++.       ..                  
T Consensus        23 ~~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~~  102 (193)
T d1af7a2          23 HGEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHE  102 (193)
T ss_dssp             CSCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSC
T ss_pred             CCCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCCcc
Confidence            4456899999999973    3333332    1  2699999999999999741       00                  


Q ss_pred             ceEEeCC--C----Cchhh-hhhccCCCCceeeEEEccccccCChh---HHHHHHHHhhcCCCeEEEE
Q 037961           77 IRYQLTP--T----MSITE-LEQNVATQSSVDLVTIASALHWFDLP---QFYKQVKWVLKKPSGVIAA  134 (262)
Q Consensus        77 ~~~~~~~--~----~~~~~-~~~~~~~~~~~D~V~~~~~~~~~d~~---~~l~~~~r~Lk~pgG~l~i  134 (262)
                      ..+...+  .    +...+ ....+.+.++||+|+|.+.+.+++++   ++++.+++.|+ |||.|++
T Consensus       103 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~fDvI~CRNVLiYf~~~~~~~vl~~l~~~L~-pGG~L~l  169 (193)
T d1af7a2         103 GLVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLK-PDGLLFA  169 (193)
T ss_dssp             SEEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEE-EEEEEEE
T ss_pred             ceeehHHHHHHHHHHhhhhccccccCCCCCccEEEeehhHHhcCHHHHHHHHHHHHHHhC-CCcEEEE
Confidence            0011100  0    00000 11122345789999999999999655   59999999999 9999887

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.15  E-value=6.3e-11  Score=98.88  Aligned_cols=122  Identities=16%  Similarity=0.164  Sum_probs=84.0

Q ss_pred             hCCCCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhcC--------CCceEEeCCCCchhhhhhccCCCCcee
Q 037961           30 KTPKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKL--------PNIRYQLTPTMSITELEQNVATQSSVD  101 (262)
Q Consensus        30 ~~~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~D  101 (262)
                      ...++.+|||++||||.++..++..|++|++||.|+.+++.|+++        .+++++++|.+..  +........+||
T Consensus       129 ~~~~~~rVLdlf~~tG~~sl~aa~~GA~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~~~--l~~~~~~~~~fD  206 (309)
T d2igta1         129 TADRPLKVLNLFGYTGVASLVAAAAGAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKF--IQREERRGSTYD  206 (309)
T ss_dssp             HSSSCCEEEEETCTTCHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHH--HHHHHHHTCCBS
T ss_pred             hccCCCeEEEecCCCcHHHHHHHhCCCeEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCHHHh--HHHHhhcCCCCC
Confidence            345678999999999999999999999999999999999999863        3578888872111  111222357899


Q ss_pred             eEEEcccc--------ccC---ChhHHHHHHHHhhcCCCeEEEEEecCCCcc-cHHHHHhhcccc
Q 037961          102 LVTIASAL--------HWF---DLPQFYKQVKWVLKKPSGVIAAWTYTMPEI-NESVGAVFKPFD  154 (262)
Q Consensus       102 ~V~~~~~~--------~~~---d~~~~l~~~~r~Lk~pgG~l~i~~~~~~~~-~~~~~~~~~~~~  154 (262)
                      +|++...-        .|-   +....+..+.++|+ |||.+++.+.....+ ...+..++.+..
T Consensus       207 ~IilDPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~-~~g~~ll~t~~s~~~s~~~~~~~~~~~~  270 (309)
T d2igta1         207 IILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILS-PKALGLVLTAYSIRASFYSMHELMRETM  270 (309)
T ss_dssp             EEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBC-TTCCEEEEEECCTTSCHHHHHHHHHHHT
T ss_pred             EEEECCCcccccccchhHHHHHHHHHHHHHHHHhcC-CCCCEEEEecCCCCCCHHHHHHHHHHHH
Confidence            99985331        222   23457778899999 999766644433333 234455554433

>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methylase YhhF
species: Escherichia coli [TaxId: 562]

Probab=99.13  E-value=1.7e-10  Score=89.63  Aligned_cols=114  Identities=15%  Similarity=0.072  Sum_probs=83.2

Q ss_pred             hCCCCh---HHHHHHHHhhCCCCCeEEEEcCcccHhHHHHHhhCC-eEEEEcCCHHHHHHHhcC------CCceEEeCCC
Q 037961           15 ARPNYP---KELFKLIASKTPKRNLAWDVGTRSGQAAASLAQIYQ-HVIATDTSPKQLKFAIKL------PNIRYQLTPT   84 (262)
Q Consensus        15 ~rp~yp---~~~~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~------~~~~~~~~~~   84 (262)
                      .||+--   +.+++.|.... .+.+|||++||+|.++...+.+|+ +|+.||.++..++.++++      .++.++..| 
T Consensus        23 ~RPt~~~vre~lfn~l~~~~-~~~~vLDlfaGsG~~giealsrGa~~v~~VE~~~~a~~~~k~N~~~~~~~~~~ii~~d-  100 (183)
T d2fpoa1          23 LRPTTDRVRETLFNWLAPVI-VDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKAGNARVVNSN-  100 (183)
T ss_dssp             ----CHHHHHHHHHHHHHHH-TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSC-
T ss_pred             cCcCcHHHHHHHHhhhhccc-chhhhhhhhccccceeeeEEecCcceeEEEEEeechhhHHHHHHhhccccceeeeeec-
Confidence            577653   56666665543 556899999999999999999887 799999999999988752      466666655 


Q ss_pred             CchhhhhhccCCCCceeeEEEccccccCChhHHHHHHHH--hhcCCCeEEEEE
Q 037961           85 MSITELEQNVATQSSVDLVTIASALHWFDLPQFYKQVKW--VLKKPSGVIAAW  135 (262)
Q Consensus        85 ~~~~~~~~~~~~~~~~D~V~~~~~~~~~d~~~~l~~~~r--~Lk~pgG~l~i~  135 (262)
                          .+..+.....+||+|++......-..++++..+.+  +|+ ++|.+++-
T Consensus       101 ----~~~~l~~~~~~fDlIf~DPPY~~~~~~~~l~~l~~~~~L~-~~~iIiiE  148 (183)
T d2fpoa1         101 ----AMSFLAQKGTPHNIVFVDPPFRRGLLEETINLLEDNGWLA-DEALIYVE  148 (183)
T ss_dssp             ----HHHHHSSCCCCEEEEEECCSSSTTTHHHHHHHHHHTTCEE-EEEEEEEE
T ss_pred             ----ccccccccccccCEEEEcCccccchHHHHHHHHHHCCCCC-CCeEEEEE
Confidence                12233345678999999988665566777777765  599 89999883

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=99.12  E-value=9.9e-11  Score=98.56  Aligned_cols=126  Identities=10%  Similarity=0.046  Sum_probs=88.5

Q ss_pred             HHHHHhhCCCCCeEEEEcCcccHhHHHHHhhCC-eEEEEcCCHHHHHHHhcC--------CCceEEeCCCCchhhhhhcc
Q 037961           24 FKLIASKTPKRNLAWDVGTRSGQAAASLAQIYQ-HVIATDTSPKQLKFAIKL--------PNIRYQLTPTMSITELEQNV   94 (262)
Q Consensus        24 ~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~--------~~~~~~~~~~~~~~~~~~~~   94 (262)
                      ...+.....++.+|||++||+|.++..++..|+ +|+++|+|+.+++.++++        .+++++.+|.+.  -+....
T Consensus       135 r~~l~~~~~~g~~VLdlf~~~G~~sl~aa~~ga~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~--~l~~~~  212 (317)
T d2b78a2         135 RNELINGSAAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFD--YFKYAR  212 (317)
T ss_dssp             HHHHHHTTTBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHH--HHHHHH
T ss_pred             HHHHHHHhhCCCceeecCCCCcHHHHHHHhCCCceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHHH--HHHHHH
Confidence            345666677889999999999999999888776 799999999999988752        357788877211  112222


Q ss_pred             CCCCceeeEEEccccc---------cC-ChhHHHHHHHHhhcCCCeEEEEEecCCCcccHHHHHhhcc
Q 037961           95 ATQSSVDLVTIASALH---------WF-DLPQFYKQVKWVLKKPSGVIAAWTYTMPEINESVGAVFKP  152 (262)
Q Consensus        95 ~~~~~~D~V~~~~~~~---------~~-d~~~~l~~~~r~Lk~pgG~l~i~~~~~~~~~~~~~~~~~~  152 (262)
                      -...+||+|++...-.         -. +..++++.+.++|+ |||.|++.+++...-.+.+..+..+
T Consensus       213 ~~~~~fD~Ii~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~-pgG~l~~~scs~~~~~~~f~~~v~~  279 (317)
T d2b78a2         213 RHHLTYDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILS-ENGLIIASTNAANMTVSQFKKQIEK  279 (317)
T ss_dssp             HTTCCEEEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEE-EEEEEEEEECCTTSCHHHHHHHHHH
T ss_pred             hhcCCCCEEEEcChhhccchhHHHHHHHHHHHHHHHHHHHcC-CCCEEEEEeCCccCCHHHHHHHHHH
Confidence            2456899999864421         11 34458888999999 9999999776543323444444433

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=99.10  E-value=2.7e-10  Score=92.43  Aligned_cols=95  Identities=18%  Similarity=0.184  Sum_probs=74.3

Q ss_pred             CCCCeEEEEcCcccHhHHHHHhh--CCeEEEEcCCHHHHHHHhcCCCceEEeCCCCchhhhhhccCCCCceeeEEEcccc
Q 037961           32 PKRNLAWDVGTRSGQAAASLAQI--YQHVIATDTSPKQLKFAIKLPNIRYQLTPTMSITELEQNVATQSSVDLVTIASAL  109 (262)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~  109 (262)
                      ....+|||||||+|.++..++++  ..+++..|+ |..++.+....+++++.+|-     ++.  .+  ..|+++..+.+
T Consensus        80 ~~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~~~~~~ri~~~~gd~-----~~~--~p--~~D~~~l~~vL  149 (244)
T d1fp1d2          80 EGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENAPPLSGIEHVGGDM-----FAS--VP--QGDAMILKAVC  149 (244)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCCTTEEEEECCT-----TTC--CC--CEEEEEEESSG
T ss_pred             cCCcEEEEecCCCcHHHHHHHHHCCCCeEEEecc-hhhhhccCCCCCeEEecCCc-----ccc--cc--cceEEEEehhh
Confidence            35688999999999999999987  457888998 46666666668899998762     122  23  45999999999


Q ss_pred             ccCCh---hHHHHHHHHhhcCCCeEEEEEec
Q 037961          110 HWFDL---PQFYKQVKWVLKKPSGVIAAWTY  137 (262)
Q Consensus       110 ~~~d~---~~~l~~~~r~Lk~pgG~l~i~~~  137 (262)
                      |..+.   .+++++++++|+ |||+|+|...
T Consensus       150 h~~~de~~~~iL~~~~~aL~-pgg~llI~e~  179 (244)
T d1fp1d2         150 HNWSDEKCIEFLSNCHKALS-PNGKVIIVEF  179 (244)
T ss_dssp             GGSCHHHHHHHHHHHHHHEE-EEEEEEEEEE
T ss_pred             hhCCHHHHHHHHHHHHHHcC-CCcEEEEEEE
Confidence            98733   348999999999 9999998553

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.07  E-value=2.9e-10  Score=89.56  Aligned_cols=92  Identities=13%  Similarity=0.121  Sum_probs=65.7

Q ss_pred             CCCeEEEEcCcccHhHHHHHhhCC-eEEEEcCCHHHHHHHhcC-----CCceEEeCCCCchhhhhhccCCCCceeeEEEc
Q 037961           33 KRNLAWDVGTRSGQAAASLAQIYQ-HVIATDTSPKQLKFAIKL-----PNIRYQLTPTMSITELEQNVATQSSVDLVTIA  106 (262)
Q Consensus        33 ~~~~vlDvGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~  106 (262)
                      .+.+|||+|||+|.++..++.+|+ +|+|+|+|+.+++.++++     .+.++..++      +..+   +++||+|+++
T Consensus        46 ~g~~vLDlg~GtG~l~i~a~~~g~~~v~~vdi~~~~~~~a~~N~~~~~~~~~~~~~d------~~~~---~~~fD~Vi~n  116 (201)
T d1wy7a1          46 EGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKGKFKVFIGD------VSEF---NSRVDIVIMN  116 (201)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTTSEEEEESC------GGGC---CCCCSEEEEC
T ss_pred             CCCEEEECcCcchHHHHHHHHcCCCEEEEEcCcHHHHHHHHHHHHHcCCCceEEECc------hhhh---CCcCcEEEEc
Confidence            678999999999999999888875 899999999999999863     345555544      3332   5679999999


Q ss_pred             cccccCChhHHHHHHHHhhcCCCeEEEE
Q 037961          107 SALHWFDLPQFYKQVKWVLKKPSGVIAA  134 (262)
Q Consensus       107 ~~~~~~d~~~~l~~~~r~Lk~pgG~l~i  134 (262)
                      ..+.+.....-...+...+. +++.+..
T Consensus       117 PP~~~~~~~~d~~~l~~~~~-~~~~v~~  143 (201)
T d1wy7a1         117 PPFGSQRKHADRPFLLKAFE-ISDVVYS  143 (201)
T ss_dssp             CCCSSSSTTTTHHHHHHHHH-HCSEEEE
T ss_pred             CccccccccccHHHHHHHHh-hcccchh
Confidence            98876532222223334455 5555544

>d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase EF2452
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.03  E-value=4.4e-10  Score=87.08  Aligned_cols=116  Identities=18%  Similarity=0.175  Sum_probs=86.0

Q ss_pred             hCCCCh---HHHHHHHHhhCCCCCeEEEEcCcccHhHHHHHhhCC-eEEEEcCCHHHHHHHhcC-------CCceEEeCC
Q 037961           15 ARPNYP---KELFKLIASKTPKRNLAWDVGTRSGQAAASLAQIYQ-HVIATDTSPKQLKFAIKL-------PNIRYQLTP   83 (262)
Q Consensus        15 ~rp~yp---~~~~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~-------~~~~~~~~~   83 (262)
                      .||+--   +.++++|.+. -.+.+|||++||+|.++...+.+|+ +|+++|.++.+++.++++       .++++..+|
T Consensus        21 ~RPt~~~vrealFn~l~~~-~~~~~vLDlfaGsG~~g~ea~srGa~~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D   99 (182)
T d2fhpa1          21 TRPTTDKVKESIFNMIGPY-FDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMD   99 (182)
T ss_dssp             SCCCCHHHHHHHHHHHCSC-CSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESC
T ss_pred             cCcCcHHHHHHHHHHHHHh-cCCCEEEEcccccccccceeeecchhHHHHHHHHHHHHHHHHHHhhhhhccccccccccc
Confidence            577652   4556666433 3678899999999999999999987 699999999999998753       367777776


Q ss_pred             CCchhhhhhccCCCCceeeEEEccccccCChhHHHHHHHH--hhcCCCeEEEE
Q 037961           84 TMSITELEQNVATQSSVDLVTIASALHWFDLPQFYKQVKW--VLKKPSGVIAA  134 (262)
Q Consensus        84 ~~~~~~~~~~~~~~~~~D~V~~~~~~~~~d~~~~l~~~~r--~Lk~pgG~l~i  134 (262)
                      ...  -++.+.-...+||+|++......-+....+..+..  +|+ +||.+++
T Consensus       100 ~~~--~l~~~~~~~~~fDlIflDPPY~~~~~~~~l~~i~~~~~L~-~~giIi~  149 (182)
T d2fhpa1         100 ANR--ALEQFYEEKLQFDLVLLDPPYAKQEIVSQLEKMLERQLLT-NEAVIVC  149 (182)
T ss_dssp             HHH--HHHHHHHTTCCEEEEEECCCGGGCCHHHHHHHHHHTTCEE-EEEEEEE
T ss_pred             chh--hhhhhcccCCCcceEEechhhhhhHHHHHHHHHHHCCCCC-CCEEEEE
Confidence            211  12222224568999999988766677778888765  699 9998887

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.98  E-value=1.3e-09  Score=89.83  Aligned_cols=113  Identities=14%  Similarity=0.154  Sum_probs=83.5

Q ss_pred             ChHHHHHHHHhhCCCCCeEEEEcCcccHhHHHHHhh-CCeEEEEcCCHHHHHHHhc----------------CCCceEEe
Q 037961           19 YPKELFKLIASKTPKRNLAWDVGTRSGQAAASLAQI-YQHVIATDTSPKQLKFAIK----------------LPNIRYQL   81 (262)
Q Consensus        19 yp~~~~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~----------------~~~~~~~~   81 (262)
                      |.+.+....+...++...||-+|+|.|..+..+.++ ..+|++||+++.+++.|++                .+++++..
T Consensus        58 Yhe~l~~~~l~~~~~p~~vLiiG~G~G~~~~~~l~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~  137 (276)
T d1mjfa_          58 YHEPLVHPAMLAHPKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTI  137 (276)
T ss_dssp             HHHHHHHHHHHHSSCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEE
T ss_pred             HHHHhhcchhhcCCCCceEEEecCCchHHHHHHHHhCCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEE
Confidence            455565555555678889999999999999998876 4589999999999999985                24567777


Q ss_pred             CCCCchhhhhhccCCCCceeeEEEcccccc-----CChhHHHHHHHHhhcCCCeEEEEEecC
Q 037961           82 TPTMSITELEQNVATQSSVDLVTIASALHW-----FDLPQFYKQVKWVLKKPSGVIAAWTYT  138 (262)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~D~V~~~~~~~~-----~d~~~~l~~~~r~Lk~pgG~l~i~~~~  138 (262)
                      +|      +...--.+++||+|++...-..     +-...+++.+.+.|+ |||+++++..+
T Consensus       138 ~D------a~~~l~~~~~yDvIi~D~~~~~~~~~~L~t~eF~~~~~~~L~-~~Gv~v~q~~s  192 (276)
T d1mjfa_         138 GD------GFEFIKNNRGFDVIIADSTDPVGPAKVLFSEEFYRYVYDALN-NPGIYVTQAGS  192 (276)
T ss_dssp             SC------HHHHHHHCCCEEEEEEECCCCC-----TTSHHHHHHHHHHEE-EEEEEEEEEEE
T ss_pred             Ch------HHHHHhccCCCCEEEEeCCCCCCCcccccCHHHHHhhHhhcC-CCceEEEecCC
Confidence            66      2221113578999997544322     123568999999999 99999987643

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.96  E-value=5.4e-10  Score=88.83  Aligned_cols=99  Identities=12%  Similarity=0.167  Sum_probs=71.1

Q ss_pred             CCCeEEEEcCcccHhHHHHHhh---CCeEEEEcCCHHHHHHHhcC-------CCceEEeCCCCchhhhhhc--cCCCCce
Q 037961           33 KRNLAWDVGTRSGQAAASLAQI---YQHVIATDTSPKQLKFAIKL-------PNIRYQLTPTMSITELEQN--VATQSSV  100 (262)
Q Consensus        33 ~~~~vlDvGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~~~~~--~~~~~~~  100 (262)
                      +..+|||+|||+|..|..++..   +.+|+++|+++.+++.|++.       .+++++.++..  ..+..+  ....++|
T Consensus        56 kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~~--e~l~~l~~~~~~~~~  133 (214)
T d2cl5a1          56 SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQ--DLIPQLKKKYDVDTL  133 (214)
T ss_dssp             CCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHH--HHGGGHHHHSCCCCE
T ss_pred             CCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCCccceeeecccc--ccccchhhccccccc
Confidence            3468999999999999999874   67999999999999998752       46888888710  011111  1345789


Q ss_pred             eeEEEccccccCChhHHHHHHHHhhcCCCeEEEE
Q 037961          101 DLVTIASALHWFDLPQFYKQVKWVLKKPSGVIAA  134 (262)
Q Consensus       101 D~V~~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i  134 (262)
                      |+|+....-........+.++.++|| |||++++
T Consensus       134 D~ifiD~~~~~~~~~~~l~~~~~lLk-pGGvIv~  166 (214)
T d2cl5a1         134 DMVFLDHWKDRYLPDTLLLEKCGLLR-KGTVLLA  166 (214)
T ss_dssp             EEEEECSCGGGHHHHHHHHHHTTCEE-EEEEEEE
T ss_pred             ceeeecccccccccHHHHHHHhCccC-CCcEEEE
Confidence            99998732111123335777889999 9998876

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=98.93  E-value=2.5e-09  Score=89.54  Aligned_cols=113  Identities=19%  Similarity=0.214  Sum_probs=82.0

Q ss_pred             ChHHHHHHHHhhCCCCCeEEEEcCcccHhHHHHHhh--CCeEEEEcCCHHHHHHHhcC-----------CCceEEeCCCC
Q 037961           19 YPKELFKLIASKTPKRNLAWDVGTRSGQAAASLAQI--YQHVIATDTSPKQLKFAIKL-----------PNIRYQLTPTM   85 (262)
Q Consensus        19 yp~~~~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~-----------~~~~~~~~~~~   85 (262)
                      |.+.+...-+...+...+||.+|.|.|..+..+++.  ..+|++||+++.+++.+++.           +++++..+|. 
T Consensus        63 Yhe~l~h~~l~~~~~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da-  141 (312)
T d1uira_          63 YHETLVHPAMLTHPEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDA-  141 (312)
T ss_dssp             HHHHHHHHHHHHSSCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCH-
T ss_pred             HHHHHhhhhhhhCCCcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchH-
Confidence            444444443444577789999999999999999875  46899999999999988752           5788888771 


Q ss_pred             chhhhhhccCCCCceeeEEEcccccc--------CChhHHHHHHHHhhcCCCeEEEEEec
Q 037961           86 SITELEQNVATQSSVDLVTIASALHW--------FDLPQFYKQVKWVLKKPSGVIAAWTY  137 (262)
Q Consensus        86 ~~~~~~~~~~~~~~~D~V~~~~~~~~--------~d~~~~l~~~~r~Lk~pgG~l~i~~~  137 (262)
                          .+.+.-.+.+||+|++...=.+        +-...+++.+.+.|+ |||++++|..
T Consensus       142 ----~~~l~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~-p~Gvlv~~~~  196 (312)
T d1uira_         142 ----RAYLERTEERYDVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLN-PGGVMGMQTG  196 (312)
T ss_dssp             ----HHHHHHCCCCEEEEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEE-EEEEEEEEEE
T ss_pred             ----HHHhhhcCCcccEEEEeCCCcccccchhhhhhhHHHHHHHHHhcC-CCceEEEecC
Confidence                1111124568999997543212        123568999999999 9999998653

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.89  E-value=4.6e-09  Score=84.98  Aligned_cols=93  Identities=18%  Similarity=0.181  Sum_probs=73.0

Q ss_pred             CCCeEEEEcCcccHhHHHHHhh--CCeEEEEcCCHHHHHHHhcCCCceEEeCCCCchhhhhhccCCCCceeeEEEccccc
Q 037961           33 KRNLAWDVGTRSGQAAASLAQI--YQHVIATDTSPKQLKFAIKLPNIRYQLTPTMSITELEQNVATQSSVDLVTIASALH  110 (262)
Q Consensus        33 ~~~~vlDvGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~~  110 (262)
                      ...+|||||||+|.++..++++  ..++++.|. |..++.+....+++++.+|      +.+ +  ...+|+++..+.+|
T Consensus        80 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~~~~~~rv~~~~gD------~f~-~--~p~aD~~~l~~vLH  149 (244)
T d1fp2a2          80 GLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLSGSNNLTYVGGD------MFT-S--IPNADAVLLKYILH  149 (244)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCBTTEEEEECC------TTT-C--CCCCSEEEEESCGG
T ss_pred             CceEEEEecCCccHHHHHHHHhCCCCeEEEecC-HHHHHhCcccCceEEEecC------ccc-C--CCCCcEEEEEeecc
Confidence            4578999999999999999987  468999998 4667766666889999887      211 1  22579999999999


Q ss_pred             cCChh---HHHHHHHHhhcCCC---eEEEEEe
Q 037961          111 WFDLP---QFYKQVKWVLKKPS---GVIAAWT  136 (262)
Q Consensus       111 ~~d~~---~~l~~~~r~Lk~pg---G~l~i~~  136 (262)
                      ..+.+   ++++++++.|+ ||   |+++|..
T Consensus       150 dw~d~~~~~iL~~~~~al~-pgg~~~~lli~e  180 (244)
T d1fp2a2         150 NWTDKDCLRILKKCKEAVT-NDGKRGKVTIID  180 (244)
T ss_dssp             GSCHHHHHHHHHHHHHHHS-GGGCCCEEEEEE
T ss_pred             cCChHHHHHHHHHHHHHcC-cccCCcEEEEEE
Confidence            77433   48999999999 98   6677643

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.88  E-value=7.2e-09  Score=85.81  Aligned_cols=114  Identities=18%  Similarity=0.166  Sum_probs=83.7

Q ss_pred             ChHHHHHHHHhhCCCCCeEEEEcCcccHhHHHHHhh--CCeEEEEcCCHHHHHHHhcC----------CCceEEeCCCCc
Q 037961           19 YPKELFKLIASKTPKRNLAWDVGTRSGQAAASLAQI--YQHVIATDTSPKQLKFAIKL----------PNIRYQLTPTMS   86 (262)
Q Consensus        19 yp~~~~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~----------~~~~~~~~~~~~   86 (262)
                      |.+.+...-+...+...+||-+|.|.|..++.+.++  ..+|++||+++.+++.+++.          +++++..+|.  
T Consensus        75 YhE~l~h~pl~~~~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da--  152 (295)
T d1inla_          75 YHEMLAHVPMFLHPNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANG--  152 (295)
T ss_dssp             HHHHHHHHHHHHSSSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCH--
T ss_pred             hhhhhcchhHhhCCCCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhH--
Confidence            445554444445577789999999999999999886  46899999999999999862          6778888761  


Q ss_pred             hhhhhhccCCCCceeeEEEcccccc------CChhHHHHHHHHhhcCCCeEEEEEecC
Q 037961           87 ITELEQNVATQSSVDLVTIASALHW------FDLPQFYKQVKWVLKKPSGVIAAWTYT  138 (262)
Q Consensus        87 ~~~~~~~~~~~~~~D~V~~~~~~~~------~d~~~~l~~~~r~Lk~pgG~l~i~~~~  138 (262)
                         .+.+.-.+++||+|++...-.+      +-...+++.+.+.|+ |||+++++..+
T Consensus       153 ---~~~l~~~~~~yDvIi~D~~dp~~~~~~~L~t~efy~~~~~~L~-~~Gi~v~q~~s  206 (295)
T d1inla_         153 ---AEYVRKFKNEFDVIIIDSTDPTAGQGGHLFTEEFYQACYDALK-EDGVFSAETED  206 (295)
T ss_dssp             ---HHHGGGCSSCEEEEEEEC----------CCSHHHHHHHHHHEE-EEEEEEEECCC
T ss_pred             ---HHHHhcCCCCCCEEEEcCCCCCcCchhhhccHHHHHHHHhhcC-CCcEEEEecCC
Confidence               1222224578999997644332      234669999999999 99999997644

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.86  E-value=5.1e-09  Score=83.26  Aligned_cols=97  Identities=21%  Similarity=0.373  Sum_probs=73.8

Q ss_pred             CCCCeEEEEcCcccHhHHHHHhh---CCeEEEEcCCHHHHHHHhcC-------CCceEEeCCCCchhhhhhc--cCCCCc
Q 037961           32 PKRNLAWDVGTRSGQAAASLAQI---YQHVIATDTSPKQLKFAIKL-------PNIRYQLTPTMSITELEQN--VATQSS   99 (262)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~~~~~--~~~~~~   99 (262)
                      .+..+|||+|||+|..|..++..   ..+|+++|+++...+.|++.       ..+++..++..  ..+..+  ....++
T Consensus        58 ~~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~--e~l~~~~~~~~~~~  135 (219)
T d2avda1          58 IQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPAL--ETLDELLAAGEAGT  135 (219)
T ss_dssp             TTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHH--HHHHHHHHTTCTTC
T ss_pred             cCCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEEeehh--hcchhhhhhcccCC
Confidence            35678899999999999999874   56999999999999999863       56888888711  011111  124678


Q ss_pred             eeeEEEccccccC-ChhHHHHHHHHhhcCCCeEEEE
Q 037961          100 VDLVTIASALHWF-DLPQFYKQVKWVLKKPSGVIAA  134 (262)
Q Consensus       100 ~D~V~~~~~~~~~-d~~~~l~~~~r~Lk~pgG~l~i  134 (262)
                      ||+|+...   +- .....++.+.++|+ |||.+++
T Consensus       136 fD~ifiD~---dk~~y~~~~~~~~~lL~-~GGvii~  167 (219)
T d2avda1         136 FDVAVVDA---DKENCSAYYERCLQLLR-PGGILAV  167 (219)
T ss_dssp             EEEEEECS---CSTTHHHHHHHHHHHEE-EEEEEEE
T ss_pred             ccEEEEeC---CHHHHHHHHHHHHHHhc-CCcEEEE
Confidence            99999752   22 45567889999999 9999998

>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Bacillus subtilis, Ermc' [TaxId: 1423]

Probab=98.81  E-value=1.2e-08  Score=81.95  Aligned_cols=84  Identities=14%  Similarity=0.090  Sum_probs=65.4

Q ss_pred             HHHHHHHHhhC--CCCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhc----CCCceEEeCCCCchhhhhhcc
Q 037961           21 KELFKLIASKT--PKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIK----LPNIRYQLTPTMSITELEQNV   94 (262)
Q Consensus        21 ~~~~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~----~~~~~~~~~~~~~~~~~~~~~   94 (262)
                      +.+++.|....  .++..|||||||+|.+|..|++.+.+|+++|+++.+++.+++    .+++.++.+|      +-.+.
T Consensus         7 ~~i~~~iv~~~~~~~~d~VlEIGpG~G~LT~~Ll~~~~~v~avE~D~~l~~~l~~~~~~~~n~~i~~~D------~l~~~   80 (235)
T d1qama_           7 KHNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRCNFVTAIEIDHKLCKTTENKLVDHDNFQVLNKD------ILQFK   80 (235)
T ss_dssp             HHHHHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHHSSEEEEECSCHHHHHHHHHHTTTCCSEEEECCC------GGGCC
T ss_pred             HHHHHHHHHhcCCCCCCeEEEECCCchHHHHHHHhCcCceEEEeeccchHHHHHHHhhcccchhhhhhh------hhhcc
Confidence            45667777765  478999999999999999999999999999999999998874    3678888876      44444


Q ss_pred             CCCCceeeEEEccccc
Q 037961           95 ATQSSVDLVTIASALH  110 (262)
Q Consensus        95 ~~~~~~D~V~~~~~~~  110 (262)
                      ++......|+++...+
T Consensus        81 ~~~~~~~~vv~NLPYn   96 (235)
T d1qama_          81 FPKNQSYKIFGNIPYN   96 (235)
T ss_dssp             CCSSCCCEEEEECCGG
T ss_pred             ccccccceeeeeehhh
Confidence            4444445567766554

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.81  E-value=8.2e-09  Score=83.44  Aligned_cols=94  Identities=17%  Similarity=0.110  Sum_probs=72.0

Q ss_pred             CCCeEEEEcCcccHhHHHHHhh--CCeEEEEcCCHHHHHHHhcCCCceEEeCCCCchhhhhhccCCCCceeeEEEccccc
Q 037961           33 KRNLAWDVGTRSGQAAASLAQI--YQHVIATDTSPKQLKFAIKLPNIRYQLTPTMSITELEQNVATQSSVDLVTIASALH  110 (262)
Q Consensus        33 ~~~~vlDvGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~~  110 (262)
                      ...+|||||||+|.++..++++  ..++++.|+. ..++.++..+++.+..+|-     .+.+  |.  .|+++....+|
T Consensus        81 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~~~~~~r~~~~~~d~-----~~~~--P~--ad~~~l~~vlh  150 (243)
T d1kyza2          81 GLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLP-HVIEDAPSYPGVEHVGGDM-----FVSI--PK--ADAVFMKWICH  150 (243)
T ss_dssp             SCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECT-TTTTTCCCCTTEEEEECCT-----TTCC--CC--CSCEECSSSST
T ss_pred             CCcEEEEecCCCcHHHHHHHHHCCCCeEEEcccH-HhhhhcccCCceEEecccc-----cccC--CC--cceEEEEEEee
Confidence            3578999999999999999997  4589999996 4566666678899988761     1222  33  47777788888


Q ss_pred             cC-C--hhHHHHHHHHhhcCCCeEEEEEec
Q 037961          111 WF-D--LPQFYKQVKWVLKKPSGVIAAWTY  137 (262)
Q Consensus       111 ~~-d--~~~~l~~~~r~Lk~pgG~l~i~~~  137 (262)
                      .. |  ...++++++++|+ |||.++|...
T Consensus       151 ~~~d~~~~~iL~~~~~al~-pgg~~li~d~  179 (243)
T d1kyza2         151 DWSDEHCLKFLKNCYEALP-DNGKVIVAEC  179 (243)
T ss_dssp             TSCHHHHHHHHHHHHHHCC-SSSCEEEEEC
T ss_pred             cCCHHHHHHHHHHHHHhcC-CCceEEEEEE
Confidence            55 3  4458999999999 9999988543

>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.80  E-value=2.7e-08  Score=76.60  Aligned_cols=118  Identities=21%  Similarity=0.259  Sum_probs=89.6

Q ss_pred             hCCCChHHHHHHHHhhCCCCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhcC--CCceEEeCCCCchhhhhh
Q 037961           15 ARPNYPKELFKLIASKTPKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKL--PNIRYQLTPTMSITELEQ   92 (262)
Q Consensus        15 ~rp~yp~~~~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~--~~~~~~~~~~~~~~~~~~   92 (262)
                      |.|..-+++++.|.  ..++.+++|+.||.|..+..+++...+|+|+|.++.++..+++.  +++.+..+.   +.++..
T Consensus         2 H~pVll~Evl~~l~--~~~g~~~vD~T~G~GGhs~~iL~~~~~viaiD~D~~ai~~a~~~~~~~~~~~~~~---f~~~~~   76 (182)
T d1wg8a2           2 HVPVLYQEALDLLA--VRPGGVYVDATLGGAGHARGILERGGRVIGLDQDPEAVARAKGLHLPGLTVVQGN---FRHLKR   76 (182)
T ss_dssp             CCCTTHHHHHHHHT--CCTTCEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHTCCTTEEEEESC---GGGHHH
T ss_pred             ccchHHHHHHHhcC--CCCCCEEEEeCCCCcHHHHHHhcccCcEEEEhhhhhHHHHHhhccccceeEeehH---HHHHHH
Confidence            56777788877773  35788999999999999999999888999999999999998863  677777776   222322


Q ss_pred             c--cCCCCceeeEEEccccccC---C-------hhHHHHHHHHhhcCCCeEEEEEecC
Q 037961           93 N--VATQSSVDLVTIASALHWF---D-------LPQFYKQVKWVLKKPSGVIAAWTYT  138 (262)
Q Consensus        93 ~--~~~~~~~D~V~~~~~~~~~---d-------~~~~l~~~~r~Lk~pgG~l~i~~~~  138 (262)
                      .  ....+.+|.|+...++--+   +       ....+....++|+ |||.+++..+.
T Consensus        77 ~l~~~~~~~vdgIl~DLGvSs~qld~~~re~~~~~~~L~~~~~~lk-~gg~~~ii~fh  133 (182)
T d1wg8a2          77 HLAALGVERVDGILADLGVSSFHLDDPSDELNALKEFLEQAAEVLA-PGGRLVVIAFH  133 (182)
T ss_dssp             HHHHTTCSCEEEEEEECSCCHHHHHCGGTHHHHHHHHHHHHHHHEE-EEEEEEEEECS
T ss_pred             HHHHcCCCccCEEEEEccCCHHHhhcchHHHHHHHHHHHHHHhhhC-CCCeEEEEecc
Confidence            2  1345789999986555221   2       2336888899999 99999987764

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.80  E-value=2.5e-08  Score=82.49  Aligned_cols=114  Identities=16%  Similarity=0.210  Sum_probs=84.2

Q ss_pred             ChHHHHHHHHhhCCCCCeEEEEcCcccHhHHHHHhhC--CeEEEEcCCHHHHHHHhc----------CCCceEEeCCCCc
Q 037961           19 YPKELFKLIASKTPKRNLAWDVGTRSGQAAASLAQIY--QHVIATDTSPKQLKFAIK----------LPNIRYQLTPTMS   86 (262)
Q Consensus        19 yp~~~~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~----------~~~~~~~~~~~~~   86 (262)
                      |.+.+....+...+...+||=+|-|.|..++.+.++.  .+++++|+++.+++.+++          .++++.+.+|.  
T Consensus        66 Yhe~l~h~~~~~~~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da--  143 (290)
T d1xj5a_          66 YQEMITHLPLCSIPNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDG--  143 (290)
T ss_dssp             HHHHHHHHHHTTSSCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCH--
T ss_pred             HHHHHhhHHHhhCCCCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccH--
Confidence            4445555555555777899999999999999998863  589999999999999986          26778887761  


Q ss_pred             hhhhhhcc-CCCCceeeEEEccccc-----cCChhHHHHHHHHhhcCCCeEEEEEecC
Q 037961           87 ITELEQNV-ATQSSVDLVTIASALH-----WFDLPQFYKQVKWVLKKPSGVIAAWTYT  138 (262)
Q Consensus        87 ~~~~~~~~-~~~~~~D~V~~~~~~~-----~~d~~~~l~~~~r~Lk~pgG~l~i~~~~  138 (262)
                         .+.+. ..+++||+|++...=.     .+-...+++.+.+.|+ |||.++++..+
T Consensus       144 ---~~~l~~~~~~~yDvIi~D~~dp~~~~~~L~t~eF~~~~~~~L~-~~Gi~v~q~~s  197 (290)
T d1xj5a_         144 ---VAFLKNAAEGSYDAVIVDSSDPIGPAKELFEKPFFQSVARALR-PGGVVCTQAES  197 (290)
T ss_dssp             ---HHHHHTSCTTCEEEEEECCCCTTSGGGGGGSHHHHHHHHHHEE-EEEEEEEECCC
T ss_pred             ---HHHHhhccccCccEEEEcCCCCCCcchhhCCHHHHHHHHHhcC-CCcEEEEecCC
Confidence               12221 2456899999753321     1123558999999999 99999997644

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.78  E-value=2.9e-08  Score=80.41  Aligned_cols=78  Identities=17%  Similarity=0.070  Sum_probs=55.4

Q ss_pred             CCCeEEEEcCcccHhHHHHHhh--CCeEEEEcCCHHHHHHHhcC-------CCceEEeCCCCchhhhhh-c-cCCCCcee
Q 037961           33 KRNLAWDVGTRSGQAAASLAQI--YQHVIATDTSPKQLKFAIKL-------PNIRYQLTPTMSITELEQ-N-VATQSSVD  101 (262)
Q Consensus        33 ~~~~vlDvGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~~~~-~-~~~~~~~D  101 (262)
                      +..++||+|||+|..+..|+.+  ..+++|+|+|+.+++.|+++       ..+.+...+..  .++.. + ...+++||
T Consensus        61 ~~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N~~~n~l~~~~~~~~~~~~--~~~~~~~~~~~~~~fD  138 (250)
T d2h00a1          61 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQK--TLLMDALKEESEIIYD  138 (250)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTT--CSSTTTSTTCCSCCBS
T ss_pred             ccceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHHHHHhCCCcceeeeeeccH--HhhhhhhhhcccCcee
Confidence            3468999999999999998875  78999999999999999863       34555543310  01111 1 12467899


Q ss_pred             eEEEccccccC
Q 037961          102 LVTIASALHWF  112 (262)
Q Consensus       102 ~V~~~~~~~~~  112 (262)
                      +|+|+..++-.
T Consensus       139 ~ivsNPPY~~~  149 (250)
T d2h00a1         139 FCMCNPPFFAN  149 (250)
T ss_dssp             EEEECCCCC--
T ss_pred             EEEecCccccc
Confidence            99999988743

>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase HI0767
species: Haemophilus influenzae [TaxId: 727]

Probab=98.78  E-value=1.7e-08  Score=78.05  Aligned_cols=115  Identities=16%  Similarity=0.098  Sum_probs=79.3

Q ss_pred             hCCCC---hHHHHHHHHhhCCCCCeEEEEcCcccHhHHHHHhhCC-eEEEEcCCHHHHHHHhcC------C--CceEEeC
Q 037961           15 ARPNY---PKELFKLIASKTPKRNLAWDVGTRSGQAAASLAQIYQ-HVIATDTSPKQLKFAIKL------P--NIRYQLT   82 (262)
Q Consensus        15 ~rp~y---p~~~~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~------~--~~~~~~~   82 (262)
                      .||+-   -+.+++.|.... .+.+|||+.||||.++...+.+|+ +|+.||.+...++..+++      .  ...+...
T Consensus        23 ~RPt~~~vrealFn~l~~~~-~~~~vLDlFaGsG~~glEalSRGA~~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~~  101 (183)
T d2ifta1          23 LRPTGDRVKETLFNWLMPYI-HQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQ  101 (183)
T ss_dssp             -----CHHHHHHHHHHHHHH-TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECS
T ss_pred             cCcCcHHHHHHHHHHhhhhc-ccceEeecccCccceeeeeeeecceeeEEeecccchhhhHhhHHhhhcccccccccccc
Confidence            46654   356677776543 456899999999999999999987 899999999999888752      1  2333333


Q ss_pred             CCCchhhhhhccCCCCceeeEEEccccccCChhHHHHHHHH--hhcCCCeEEEE
Q 037961           83 PTMSITELEQNVATQSSVDLVTIASALHWFDLPQFYKQVKW--VLKKPSGVIAA  134 (262)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~D~V~~~~~~~~~d~~~~l~~~~r--~Lk~pgG~l~i  134 (262)
                      +.   -+.........+||+|++......-.....+..+..  +|+ ++|.+++
T Consensus       102 d~---~~~l~~~~~~~~fDlIFlDPPY~~~~~~~~l~~l~~~~~L~-~~~liii  151 (183)
T d2ifta1         102 SS---LDFLKQPQNQPHFDVVFLDPPFHFNLAEQAISLLCENNWLK-PNALIYV  151 (183)
T ss_dssp             CH---HHHTTSCCSSCCEEEEEECCCSSSCHHHHHHHHHHHTTCEE-EEEEEEE
T ss_pred             cc---cccccccccCCcccEEEechhHhhhhHHHHHHHHHHhCCcC-CCcEEEE
Confidence            21   111122234567999999988776556667777765  699 8999988

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=98.76  E-value=2.2e-08  Score=83.31  Aligned_cols=115  Identities=15%  Similarity=0.171  Sum_probs=81.5

Q ss_pred             CChHHHHHHHHhhCCCCCeEEEEcCcccHhHHHHHhhC--CeEEEEcCCHHHHHHHhcC----------CCceEEeCCCC
Q 037961           18 NYPKELFKLIASKTPKRNLAWDVGTRSGQAAASLAQIY--QHVIATDTSPKQLKFAIKL----------PNIRYQLTPTM   85 (262)
Q Consensus        18 ~yp~~~~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~----------~~~~~~~~~~~   85 (262)
                      .|.+.+...-+...+...+||-+|-|.|..++.+.++.  .+|+++|+++.+++.+++.          +++++..+|. 
T Consensus        91 ~YhE~l~h~pl~~~~~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da-  169 (312)
T d2b2ca1          91 SYQEMLAHLPMFAHPDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDG-  169 (312)
T ss_dssp             HHHHHHHHHHHHHSSSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCH-
T ss_pred             HHHHHhhhHHHhcCCCCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchH-
Confidence            45555555444456777889999999999999999864  6899999999999999862          5667776661 


Q ss_pred             chhhhhhccCCCCceeeEEEccccc-----cCChhHHHHHHHHhhcCCCeEEEEEecC
Q 037961           86 SITELEQNVATQSSVDLVTIASALH-----WFDLPQFYKQVKWVLKKPSGVIAAWTYT  138 (262)
Q Consensus        86 ~~~~~~~~~~~~~~~D~V~~~~~~~-----~~d~~~~l~~~~r~Lk~pgG~l~i~~~~  138 (262)
                          .+.+.-...+||+|++...-.     ++-...+++.+.+.|+ |||+++.+.-+
T Consensus       170 ----~~~l~~~~~~yDvII~D~~dp~~~~~~L~t~eFy~~~~~~L~-~~Gi~v~q~~s  222 (312)
T d2b2ca1         170 ----FEFLKNHKNEFDVIITDSSDPVGPAESLFGQSYYELLRDALK-EDGILSSQGES  222 (312)
T ss_dssp             ----HHHHHHCTTCEEEEEECCC-------------HHHHHHHHEE-EEEEEEEECCC
T ss_pred             ----HHHHHhCCCCCCEEEEcCCCCCCcchhhhhHHHHHHHHhhcC-CCcEEEEecCC
Confidence                111222467899999754322     2344568999999999 99999997543

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=98.76  E-value=3.7e-08  Score=80.74  Aligned_cols=114  Identities=17%  Similarity=0.241  Sum_probs=84.2

Q ss_pred             ChHHHHHHHHhhCCCCCeEEEEcCcccHhHHHHHhh--CCeEEEEcCCHHHHHHHhcC----------CCceEEeCCCCc
Q 037961           19 YPKELFKLIASKTPKRNLAWDVGTRSGQAAASLAQI--YQHVIATDTSPKQLKFAIKL----------PNIRYQLTPTMS   86 (262)
Q Consensus        19 yp~~~~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~----------~~~~~~~~~~~~   86 (262)
                      |.+.+....+...+...+||-+|-|.|..+..+.++  ..+|+++|+++.+++.|++.          ++++++.+|.  
T Consensus        61 Yhe~l~h~~l~~~~~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~--  138 (274)
T d1iy9a_          61 YHEMVAHVPLFTHPNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDG--  138 (274)
T ss_dssp             HHHHHHHHHHHHSSSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCS--
T ss_pred             chhhhccchhhccCCcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechH--
Confidence            334444444445577789999999999999999986  46999999999999999752          6778887762  


Q ss_pred             hhhhhhccCCCCceeeEEEcccccc-----CChhHHHHHHHHhhcCCCeEEEEEecC
Q 037961           87 ITELEQNVATQSSVDLVTIASALHW-----FDLPQFYKQVKWVLKKPSGVIAAWTYT  138 (262)
Q Consensus        87 ~~~~~~~~~~~~~~D~V~~~~~~~~-----~d~~~~l~~~~r~Lk~pgG~l~i~~~~  138 (262)
                         .+.+.-.+.+||+|++...-.+     +-...+++.+.+.|+ |||+++.+..+
T Consensus       139 ---~~~l~~~~~~yDvIi~D~~~p~~~~~~L~t~eFy~~~~~~L~-~~Gv~v~q~~s  191 (274)
T d1iy9a_         139 ---FMHIAKSENQYDVIMVDSTEPVGPAVNLFTKGFYAGIAKALK-EDGIFVAQTDN  191 (274)
T ss_dssp             ---HHHHHTCCSCEEEEEESCSSCCSCCCCCSTTHHHHHHHHHEE-EEEEEEEECCC
T ss_pred             ---HHHHhhcCCCCCEEEEcCCCCCCcchhhccHHHHHHHHhhcC-CCceEEEecCC
Confidence               1112224578999997643221     235679999999999 99999997643

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.75  E-value=3.2e-08  Score=81.52  Aligned_cols=114  Identities=15%  Similarity=0.203  Sum_probs=82.2

Q ss_pred             ChHHHHHHHHhhCCCCCeEEEEcCcccHhHHHHHhh--CCeEEEEcCCHHHHHHHhc----------CCCceEEeCCCCc
Q 037961           19 YPKELFKLIASKTPKRNLAWDVGTRSGQAAASLAQI--YQHVIATDTSPKQLKFAIK----------LPNIRYQLTPTMS   86 (262)
Q Consensus        19 yp~~~~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~----------~~~~~~~~~~~~~   86 (262)
                      |.+.+....+...+...+||-+|-|.|..+..+.++  ..+|+++|+++.+++.|++          .+++++..+|.  
T Consensus        64 Yhe~l~h~~l~~~~~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da--  141 (285)
T d2o07a1          64 YQEMIANLPLCSHPNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDG--  141 (285)
T ss_dssp             HHHHHHHHHHTTSSSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCH--
T ss_pred             HHHHhccHhhhhCcCcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccH--
Confidence            444444444445577789999999999999999986  5699999999999999975          26788887761  


Q ss_pred             hhhhhhccCCCCceeeEEEccccc-----cCChhHHHHHHHHhhcCCCeEEEEEecC
Q 037961           87 ITELEQNVATQSSVDLVTIASALH-----WFDLPQFYKQVKWVLKKPSGVIAAWTYT  138 (262)
Q Consensus        87 ~~~~~~~~~~~~~~D~V~~~~~~~-----~~d~~~~l~~~~r~Lk~pgG~l~i~~~~  138 (262)
                         .+.+.-..++||+|++...-.     .+-...+++.+.+.|+ |||.++++..+
T Consensus       142 ---~~~l~~~~~~yDvIi~D~~~p~~~~~~L~t~eF~~~~~~~L~-~~Gi~v~q~~s  194 (285)
T d2o07a1         142 ---FEFMKQNQDAFDVIITDSSDPMGPAESLFKESYYQLMKTALK-EDGVLCCQGEC  194 (285)
T ss_dssp             ---HHHHHTCSSCEEEEEEECC-----------CHHHHHHHHHEE-EEEEEEEEEEC
T ss_pred             ---HHHHhcCCCCCCEEEEcCCCCCCcccccccHHHHHHHHHhcC-CCCeEEEeccc
Confidence               111222456899999863211     2234558999999999 99999997644

>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Thermotoga maritima [TaxId: 2336]

Probab=98.71  E-value=3.4e-08  Score=80.75  Aligned_cols=108  Identities=23%  Similarity=0.249  Sum_probs=71.4

Q ss_pred             HHHHHHHHhhC--CCCCeEEEEcCcccHhHHHHHhh-CCeEEEEcCCHHHHHHHhcC-------CCceEEeCCCCchhhh
Q 037961           21 KELFKLIASKT--PKRNLAWDVGTRSGQAAASLAQI-YQHVIATDTSPKQLKFAIKL-------PNIRYQLTPTMSITEL   90 (262)
Q Consensus        21 ~~~~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~~   90 (262)
                      +.+++.+.+..  .+..+++|+|||+|..+..++.. .++|+++|+|+..++.|+++       ..+.+..++-     .
T Consensus        96 E~lv~~~~~~~~~~~~~~vld~g~GsG~i~~~la~~~~~~v~a~Dis~~Al~~A~~Na~~~~~~~~~~i~~~~~-----~  170 (271)
T d1nv8a_          96 EELVELALELIRKYGIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEF-----L  170 (271)
T ss_dssp             HHHHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESST-----T
T ss_pred             hhhhhhhhhhhccccccEEEEeeeeeehhhhhhhhcccceeeechhhhhHHHHHHHHHHHcCCCceeEEeeccc-----c
Confidence            55566665543  24568999999999999888765 56899999999999999863       2344454441     1


Q ss_pred             hhccCCCCceeeEEEccccc--------c--CChhH----------HHHH-HHHhhcCCCeEEEE
Q 037961           91 EQNVATQSSVDLVTIASALH--------W--FDLPQ----------FYKQ-VKWVLKKPSGVIAA  134 (262)
Q Consensus        91 ~~~~~~~~~~D~V~~~~~~~--------~--~d~~~----------~l~~-~~r~Lk~pgG~l~i  134 (262)
                      +..+...++||+|+|+...-        .  .+|..          ++++ +.++|+ |||.+++
T Consensus       171 ~~~~~~~~~fDlIVsNPPYI~~~~~l~~~~~~EP~~AL~gg~dGl~~~r~i~~~~L~-~~G~l~~  234 (271)
T d1nv8a_         171 EPFKEKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDT-SGKIVLM  234 (271)
T ss_dssp             GGGGGGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCC-TTCEEEE
T ss_pred             cccccccCcccEEEEcccccCcccccceeeeeccccccccccchHHHHHHHHHHhcC-CCCEEEE
Confidence            22222347899999985421        0  12221          2322 556788 9998887

>d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Streptococcus pneumoniae, Ermam [TaxId: 1313]

Probab=98.71  E-value=1.6e-09  Score=87.60  Aligned_cols=84  Identities=12%  Similarity=0.171  Sum_probs=66.6

Q ss_pred             HHHHHHhhC--CCCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhcC----CCceEEeCCCCchhhhhhccCC
Q 037961           23 LFKLIASKT--PKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKL----PNIRYQLTPTMSITELEQNVAT   96 (262)
Q Consensus        23 ~~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~----~~~~~~~~~~~~~~~~~~~~~~   96 (262)
                      +++.|.+..  .+...|||||||+|.+|..|++.+.+|+++|+++.+++.+++.    ++++++.+|      +.++.++
T Consensus        17 ii~kIv~~~~~~~~d~VLEIGpG~G~LT~~L~~~~~~v~aIE~D~~l~~~l~~~~~~~~n~~ii~~D------~l~~~~~   90 (245)
T d1yuba_          17 VLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKISKQVTSIELDSHLFNLSSEKLKLNTRVTLIHQD------ILQFQFP   90 (245)
T ss_dssp             THHHHHHHCCCCSSEEEEECSCCCSSCSHHHHHHSSEEEESSSSCSSSSSSSCTTTTCSEEEECCSC------CTTTTCC
T ss_pred             HHHHHHHhcCCCCCCeEEEECCCccHHHHHHHhhcCceeEeeecccchhhhhhhhhhccchhhhhhh------hhccccc
Confidence            355565554  4778999999999999999999999999999999999888753    567777765      4555566


Q ss_pred             CCceeeEEEccccccC
Q 037961           97 QSSVDLVTIASALHWF  112 (262)
Q Consensus        97 ~~~~D~V~~~~~~~~~  112 (262)
                      ....+.|+++...|..
T Consensus        91 ~~~~~~vv~NLPY~Is  106 (245)
T d1yuba_          91 NKQRYKIVGNIPYHLS  106 (245)
T ss_dssp             CSSEEEEEEECCSSSC
T ss_pred             cceeeeEeeeeehhhh
Confidence            7778888888886644

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.70  E-value=2.1e-08  Score=79.95  Aligned_cols=107  Identities=14%  Similarity=0.248  Sum_probs=76.9

Q ss_pred             HHHHHHhhCCCCCeEEEEcCcccHhHHHHHhh---CCeEEEEcCCHHHHHHHhcC-------CCceEEeCC-CCchhhhh
Q 037961           23 LFKLIASKTPKRNLAWDVGTRSGQAAASLAQI---YQHVIATDTSPKQLKFAIKL-------PNIRYQLTP-TMSITELE   91 (262)
Q Consensus        23 ~~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~-~~~~~~~~   91 (262)
                      ++..|... .+..+|||+|+++|..|..++..   ..+++.+|.++...+.|++.       ..++++.++ ...+....
T Consensus        50 ~L~~L~~~-~~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a~~~L~~l~  128 (227)
T d1susa1          50 FLSMLLKL-INAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMI  128 (227)
T ss_dssp             HHHHHHHH-HTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHH
T ss_pred             HHHHHHHh-cCCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccceeeeehHHHHHHHHHH
Confidence            34444333 35578899999999999999863   57999999999999999862       468888887 11111111


Q ss_pred             hccCCCCceeeEEEccccccC-ChhHHHHHHHHhhcCCCeEEEE
Q 037961           92 QNVATQSSVDLVTIASALHWF-DLPQFYKQVKWVLKKPSGVIAA  134 (262)
Q Consensus        92 ~~~~~~~~~D~V~~~~~~~~~-d~~~~l~~~~r~Lk~pgG~l~i  134 (262)
                      ......++||+|+...   +- .....++.+.++|+ |||.+++
T Consensus       129 ~~~~~~~~fD~iFiDa---~k~~y~~~~e~~~~ll~-~gGiii~  168 (227)
T d1susa1         129 KDEKNHGSYDFIFVDA---DKDNYLNYHKRLIDLVK-VGGVIGY  168 (227)
T ss_dssp             HCGGGTTCBSEEEECS---CSTTHHHHHHHHHHHBC-TTCCEEE
T ss_pred             hccccCCceeEEEecc---chhhhHHHHHHHHhhcC-CCcEEEE
Confidence            1112356899999862   22 45668889999999 9999998

>d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RNA methyltransferase FtsJ
domain: RNA methyltransferase FtsJ
species: Escherichia coli [TaxId: 562]

Probab=98.59  E-value=7.5e-08  Score=73.96  Aligned_cols=98  Identities=16%  Similarity=0.114  Sum_probs=70.6

Q ss_pred             CCCCCeEEEEcCcccHhHHHHHhh---CCeEEEEcCCHHHHHHHhcCCCceEEeCCCCchh--hhhhccCCCCceeeEEE
Q 037961           31 TPKRNLAWDVGTRSGQAAASLAQI---YQHVIATDTSPKQLKFAIKLPNIRYQLTPTMSIT--ELEQNVATQSSVDLVTI  105 (262)
Q Consensus        31 ~~~~~~vlDvGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~D~V~~  105 (262)
                      ++++..||||||++|.+++.+.+.   ...++++|+.+-     ...+++.+..++.....  +........+++|+|+|
T Consensus        20 ~k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~-----~~i~~~~~~~~d~~~~~~~~~~~~~~~~~~~DlVlS   94 (180)
T d1ej0a_          20 FKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPM-----DPIVGVDFLQGDFRDELVMKALLERVGDSKVQVVMS   94 (180)
T ss_dssp             CCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCC-----CCCTTEEEEESCTTSHHHHHHHHHHHTTCCEEEEEE
T ss_pred             cCCCCeEEEEeccCCcceEEEEeeccccceEEEeecccc-----cccCCceEeecccccchhhhhhhhhccCcceeEEEe
Confidence            478899999999999999988874   457999999752     34578888888821111  11111235678999999


Q ss_pred             ccccccC-----Ch-------hHHHHHHHHhhcCCCeEEEE
Q 037961          106 ASALHWF-----DL-------PQFYKQVKWVLKKPSGVIAA  134 (262)
Q Consensus       106 ~~~~~~~-----d~-------~~~l~~~~r~Lk~pgG~l~i  134 (262)
                      ..+..-.     |.       ..++.-+.++|+ +||.|++
T Consensus        95 D~ap~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk-~gG~fV~  134 (180)
T d1ej0a_          95 DMAPNMSGTPAVDIPRAMYLVELALEMCRDVLA-PGGSFVV  134 (180)
T ss_dssp             CCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEE-EEEEEEE
T ss_pred             cccchhcccchhHHHHHHHHHHHHHHhhhhccC-CCCcEEE
Confidence            8776533     21       125667889999 9999998

>d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: (Uracil-5-)-methyltransferase
domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=98.57  E-value=1.1e-07  Score=80.92  Aligned_cols=124  Identities=12%  Similarity=0.135  Sum_probs=82.9

Q ss_pred             HHHHHHHHhhCC--CCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhc------CCCceEEeCCCCchhhhhh
Q 037961           21 KELFKLIASKTP--KRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIK------LPNIRYQLTPTMSITELEQ   92 (262)
Q Consensus        21 ~~~~~~l~~~~~--~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~------~~~~~~~~~~~~~~~~~~~   92 (262)
                      +.+++.+.+...  +..+|||+-||+|.++..|++.+.+|+|+|.++.+++.|++      ..++.+..++...  .+..
T Consensus       198 e~l~~~v~~~~~~~~~~~vlDLycG~G~fsl~La~~~~~V~gvE~~~~ai~~A~~na~~n~i~n~~~~~~~~~~--~~~~  275 (358)
T d1uwva2         198 QKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEE--DVTK  275 (358)
T ss_dssp             HHHHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTTSSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTS--CCSS
T ss_pred             hHHHHHHHHhhccCCCceEEEecccccccchhccccccEEEeccCcHHHHHHHHHhHHhcccccceeeecchhh--hhhh
Confidence            556666666543  67889999999999999999999999999999999999885      2678888877111  1122


Q ss_pred             ccCCCCceeeEEEccccccCChhHHHHHHHHhhcCCCeEEEEEecCCCcccHHHHHhhc
Q 037961           93 NVATQSSVDLVTIASALHWFDLPQFYKQVKWVLKKPSGVIAAWTYTMPEINESVGAVFK  151 (262)
Q Consensus        93 ~~~~~~~~D~V~~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~~~~~~~~~~~~~~~  151 (262)
                      ......++|+|+....=--+  .++++.+.+. + |.-.+++ ++++.++.+.+..+.+
T Consensus       276 ~~~~~~~~d~vilDPPR~G~--~~~~~~l~~~-~-~~~ivYV-SCnp~TlaRDl~~l~~  329 (358)
T d1uwva2         276 QPWAKNGFDKVLLDPARAGA--AGVMQQIIKL-E-PIRIVYV-SCNPATLARDSEALLK  329 (358)
T ss_dssp             SGGGTTCCSEEEECCCTTCC--HHHHHHHHHH-C-CSEEEEE-ESCHHHHHHHHHHHHH
T ss_pred             hhhhhccCceEEeCCCCccH--HHHHHHHHHc-C-CCEEEEE-eCCHHHHHHHHHHHHH
Confidence            22345679999964333222  2356666554 5 6655555 4454444455554443

>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: DNA methylase TaqI, N-terminal domain
domain: DNA methylase TaqI, N-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=98.57  E-value=1.3e-07  Score=74.69  Aligned_cols=107  Identities=16%  Similarity=0.218  Sum_probs=76.1

Q ss_pred             hHHHHHHHHhhC--CCCCeEEEEcCcccHhHHHHHhh---CCeEEEEcCCHHHHHHHhcCCCceEEeCCCCchhhhhhcc
Q 037961           20 PKELFKLIASKT--PKRNLAWDVGTRSGQAAASLAQI---YQHVIATDTSPKQLKFAIKLPNIRYQLTPTMSITELEQNV   94 (262)
Q Consensus        20 p~~~~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~   94 (262)
                      |..+.+.+....  +++.+|||.|||+|.++..+.+.   ...++|+|+++..+..++   ......++      .... 
T Consensus         4 P~~i~~~m~~l~~~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~~~---~~~~~~~~------~~~~-   73 (223)
T d2ih2a1           4 PPEVVDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLPP---WAEGILAD------FLLW-   73 (223)
T ss_dssp             CHHHHHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCCT---TEEEEESC------GGGC-
T ss_pred             CHHHHHHHHHhcCCCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhhcc---cceeeeee------hhcc-
Confidence            678888888775  46789999999999998888764   457999999987654333   34555554      1111 


Q ss_pred             CCCCceeeEEEccccccC-----------------------------C-hhHHHHHHHHhhcCCCeEEEEEec
Q 037961           95 ATQSSVDLVTIASALHWF-----------------------------D-LPQFYKQVKWVLKKPSGVIAAWTY  137 (262)
Q Consensus        95 ~~~~~~D~V~~~~~~~~~-----------------------------d-~~~~l~~~~r~Lk~pgG~l~i~~~  137 (262)
                      .....||+|+++..+...                             + ...++..+.+.|+ |||.+++...
T Consensus        74 ~~~~~fd~ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk-~~G~~~~I~p  145 (223)
T d2ih2a1          74 EPGEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLK-PGGVLVFVVP  145 (223)
T ss_dssp             CCSSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEE-EEEEEEEEEE
T ss_pred             ccccccceecccCccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcc-cCCceEEEEe
Confidence            245689999998775311                             1 1236788999999 9999987543

>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Hypothetical protein Lmo1582
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.50  E-value=1.5e-07  Score=79.10  Aligned_cols=110  Identities=15%  Similarity=0.115  Sum_probs=76.2

Q ss_pred             hHHHHHHHHhh------CCCCCeEEEEcCcccHhHHHHHhh----C---CeEEEEcCCHHHHHHHhc-----CCCceEEe
Q 037961           20 PKELFKLIASK------TPKRNLAWDVGTRSGQAAASLAQI----Y---QHVIATDTSPKQLKFAIK-----LPNIRYQL   81 (262)
Q Consensus        20 p~~~~~~l~~~------~~~~~~vlDvGcG~G~~~~~l~~~----~---~~v~~vD~s~~~~~~a~~-----~~~~~~~~   81 (262)
                      |..+.+.+...      ..++.+|||.|||+|.+...+..+    .   .+++|+|+++.+++.|+.     ........
T Consensus        98 P~~i~~~m~~l~~~~~~~~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~~~~~~~  177 (328)
T d2f8la1          98 PDSIGFIVAYLLEKVIQKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLH  177 (328)
T ss_dssp             CHHHHHHHHHHHHHHHTTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEE
T ss_pred             cHHHHHHHHHHHHHHhCCCCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhhhhhhhc
Confidence            66655444322      235678999999999999887653    1   269999999999998874     24555555


Q ss_pred             CCCCchhhhhhccCCCCceeeEEEccccccC-Ch------------------hHHHHHHHHhhcCCCeEEEEEec
Q 037961           82 TPTMSITELEQNVATQSSVDLVTIASALHWF-DL------------------PQFYKQVKWVLKKPSGVIAAWTY  137 (262)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~D~V~~~~~~~~~-d~------------------~~~l~~~~r~Lk~pgG~l~i~~~  137 (262)
                      ++.     ..  .....+||+|+++..+... ..                  ..+++.+.+.|+ |||++++...
T Consensus       178 ~d~-----~~--~~~~~~fD~vi~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk-~~G~~~~I~p  244 (328)
T d2f8la1         178 QDG-----LA--NLLVDPVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTK-PGGYLFFLVP  244 (328)
T ss_dssp             SCT-----TS--CCCCCCEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEE-EEEEEEEEEE
T ss_pred             ccc-----cc--ccccccccccccCCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcC-CCCceEEEec
Confidence            541     11  1256789999999876321 11                  126999999999 9999887443

>d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: High level kasugamycin resistance protein KsgA
species: Escherichia coli [TaxId: 562]

Probab=98.37  E-value=4e-07  Score=73.45  Aligned_cols=62  Identities=8%  Similarity=0.063  Sum_probs=52.0

Q ss_pred             HHHHHHHhhC--CCCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhcC----CCceEEeCC
Q 037961           22 ELFKLIASKT--PKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKL----PNIRYQLTP   83 (262)
Q Consensus        22 ~~~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~----~~~~~~~~~   83 (262)
                      .+++.|.+..  .++..|||||||+|.+|..|++.+.+|+++|+++.+++..++.    +++.++.+|
T Consensus         8 ~~~~~Iv~~~~~~~~d~vlEIGpG~G~LT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~~~~~~~ii~~D   75 (252)
T d1qyra_           8 FVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGERLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQD   75 (252)
T ss_dssp             HHHHHHHHHHCCCTTCCEEEECCTTTTTHHHHHTTCSCEEEECCCHHHHHHHHTCTTTGGGEEEECSC
T ss_pred             HHHHHHHHhcCCCCCCEEEEECCCchHHHHHHHccCCceEEEEeccchhHHHHHHhhhccchhHHhhh
Confidence            4455555554  4678899999999999999999999999999999999988753    678888888

>d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Probable dimethyladenosine transferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.29  E-value=1.4e-06  Score=71.15  Aligned_cols=82  Identities=13%  Similarity=0.183  Sum_probs=61.8

Q ss_pred             HHHHHHHHhhC--CCCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhcC-------CCceEEeCCCCchhhhh
Q 037961           21 KELFKLIASKT--PKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKL-------PNIRYQLTPTMSITELE   91 (262)
Q Consensus        21 ~~~~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~~~   91 (262)
                      +.+++.|.+..  .++..|||||||+|.+|..|++.+++|+++|+++.+++..++.       .+++++.+|      +.
T Consensus         7 ~~i~~kIv~~~~~~~~d~VlEIGPG~G~LT~~Ll~~~~~v~aiE~D~~l~~~L~~~~~~~~~~~~~~~i~~D------~l   80 (278)
T d1zq9a1           7 PLIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEKAKKVVACELDPRLVAELHKRVQGTPVASKLQVLVGD------VL   80 (278)
T ss_dssp             HHHHHHHHHHTCCCTTCEEEEECCTTSTTHHHHHHHSSEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESC------TT
T ss_pred             HHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHhcCCcEEEEEEccchhHHHHHHHhhhccccchhhhHHH------Hh
Confidence            34566666655  4778999999999999999999999999999999999988742       467778776      22


Q ss_pred             hccCCCCceeeEEEccccc
Q 037961           92 QNVATQSSVDLVTIASALH  110 (262)
Q Consensus        92 ~~~~~~~~~D~V~~~~~~~  110 (262)
                      ...+  ..++.|+++...+
T Consensus        81 ~~~~--~~~~~vV~NLPY~   97 (278)
T d1zq9a1          81 KTDL--PFFDTCVANLPYQ   97 (278)
T ss_dssp             TSCC--CCCSEEEEECCGG
T ss_pred             hhhh--hhhhhhhcchHHH
Confidence            2222  2356788876654

>d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CmcI-like
domain: Cephalosporin hydroxylase CmcI
species: Streptomyces clavuligerus [TaxId: 1901]

Probab=98.20  E-value=2.4e-06  Score=67.89  Aligned_cols=110  Identities=15%  Similarity=0.174  Sum_probs=71.6

Q ss_pred             hHHH--HHHHHhhCCCCCeEEEEcCcccHhHHHHHhh------CCeEEEEcCCHHHHHHHh-cCCCceEEeCCCCchhhh
Q 037961           20 PKEL--FKLIASKTPKRNLAWDVGTRSGQAAASLAQI------YQHVIATDTSPKQLKFAI-KLPNIRYQLTPTMSITEL   90 (262)
Q Consensus        20 p~~~--~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~------~~~v~~vD~s~~~~~~a~-~~~~~~~~~~~~~~~~~~   90 (262)
                      |..+  +..|+...+ +.+|||+|++.|..+..++..      ..+|+++|+++....... ...++.+..++......+
T Consensus        66 p~d~~~~~eli~~~K-Pk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~~~~~~I~~i~gDs~~~~~~  144 (232)
T d2bm8a1          66 PDTQAVYHDMLWELR-PRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASDMENITLHQGDCSDLTTF  144 (232)
T ss_dssp             HHHHHHHHHHHHHHC-CSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGGCTTEEEEECCSSCSGGG
T ss_pred             HHHHHHHHHHHHHhC-CCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhhccccceeeeecccccHHHH
Confidence            5544  444554444 467899999999988776642      468999999876654332 357899999882222222


Q ss_pred             hhccCCCCceeeEEEccccccCChhHHHHHHHHhhcCCCeEEEE
Q 037961           91 EQNVATQSSVDLVTIASALHWFDLPQFYKQVKWVLKKPSGVIAA  134 (262)
Q Consensus        91 ~~~~~~~~~~D~V~~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i  134 (262)
                      +.+  ....+|+|+.-.. |..+....--+...+|+ +||.+++
T Consensus       145 ~~l--~~~~~dlIfID~~-H~~~~v~~~~~~~~lLk-~GG~iIv  184 (232)
T d2bm8a1         145 EHL--REMAHPLIFIDNA-HANTFNIMKWAVDHLLE-EGDYFII  184 (232)
T ss_dssp             GGG--SSSCSSEEEEESS-CSSHHHHHHHHHHHTCC-TTCEEEE
T ss_pred             HHH--HhcCCCEEEEcCC-cchHHHHHHHHHhcccC-cCCEEEE
Confidence            232  4556888887644 66533322114668999 9999998

>d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Escherichia coli [TaxId: 562]

Probab=98.17  E-value=4.9e-06  Score=64.85  Aligned_cols=93  Identities=20%  Similarity=0.200  Sum_probs=72.8

Q ss_pred             CCCeEEEEcCcccHhHHHHHhh--CCeEEEEcCCHHHHHHHhc------CCCceEEeCCCCchhhhhhccCCCCceeeEE
Q 037961           33 KRNLAWDVGTRSGQAAASLAQI--YQHVIATDTSPKQLKFAIK------LPNIRYQLTPTMSITELEQNVATQSSVDLVT  104 (262)
Q Consensus        33 ~~~~vlDvGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~  104 (262)
                      +...++|+|+|.|.-+..++=.  ..+++.+|.+..=+...+.      ..++.+...+      +++.. ...+||+|+
T Consensus        65 ~~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~L~L~nv~v~~~R------~E~~~-~~~~fD~V~  137 (207)
T d1jsxa_          65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSR------VEEFP-SEPPFDGVI  137 (207)
T ss_dssp             CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECC------TTTSC-CCSCEEEEE
T ss_pred             cCCceeeeeccCCceeeehhhhcccceEEEEecchHHHHHHHHHHHHcCCcceeeeccc------hhhhc-cccccceeh
Confidence            4568999999999999998864  5689999999988776654      3678888765      44432 456899998


Q ss_pred             EccccccCChhHHHHHHHHhhcCCCeEEEEEe
Q 037961          105 IASALHWFDLPQFYKQVKWVLKKPSGVIAAWT  136 (262)
Q Consensus       105 ~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~  136 (262)
                      |...   .+...+++-+...++ +||.++++-
T Consensus       138 sRA~---~~~~~ll~~~~~~l~-~~g~~~~~K  165 (207)
T d1jsxa_         138 SRAF---ASLNDMVSWCHHLPG-EQGRFYALK  165 (207)
T ss_dssp             CSCS---SSHHHHHHHHTTSEE-EEEEEEEEE
T ss_pred             hhhh---cCHHHHHHHHHHhcC-CCcEEEEEC
Confidence            7432   267889999999999 999988854

>d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Type I restriction enzyme StySJI M protein
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=98.02  E-value=7.6e-06  Score=70.90  Aligned_cols=110  Identities=14%  Similarity=0.132  Sum_probs=80.1

Q ss_pred             hHHHHHHHHhhCC--CCCeEEEEcCcccHhHHHHHhh---------------CCeEEEEcCCHHHHHHHhcC--------
Q 037961           20 PKELFKLIASKTP--KRNLAWDVGTRSGQAAASLAQI---------------YQHVIATDTSPKQLKFAIKL--------   74 (262)
Q Consensus        20 p~~~~~~l~~~~~--~~~~vlDvGcG~G~~~~~l~~~---------------~~~v~~vD~s~~~~~~a~~~--------   74 (262)
                      |..+.+.+...+.  +..+|+|-+||+|.+...+.++               ...+.|+|+++.+...|+..        
T Consensus       147 P~~Iv~~mv~ll~~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g~~~  226 (425)
T d2okca1         147 PRPLIQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGT  226 (425)
T ss_dssp             CHHHHHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCS
T ss_pred             chhhhHhhheeccCcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcCCcc
Confidence            7888888887763  4689999999999999887653               13589999999999888731        


Q ss_pred             CCceEEeCCCCchhhhhhccCCCCceeeEEEccccccC--C----------------hhHHHHHHHHhhcCCCeEEEEEe
Q 037961           75 PNIRYQLTPTMSITELEQNVATQSSVDLVTIASALHWF--D----------------LPQFYKQVKWVLKKPSGVIAAWT  136 (262)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~~~~--d----------------~~~~l~~~~r~Lk~pgG~l~i~~  136 (262)
                      .......++.+     ..  .+..+||+|+++..+.--  .                --.+++.+.+.|+ +||.+++..
T Consensus       227 ~~~~i~~~d~l-----~~--~~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk-~~G~~~iI~  298 (425)
T d2okca1         227 DRSPIVCEDSL-----EK--EPSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLK-TGGRAAVVL  298 (425)
T ss_dssp             SCCSEEECCTT-----TS--CCSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEE-EEEEEEEEE
T ss_pred             ccceeecCchh-----hh--hcccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcC-CCCeEEEEe
Confidence            23445554411     11  246689999999888421  0                1138999999999 999988754


Q ss_pred             c
Q 037961          137 Y  137 (262)
Q Consensus       137 ~  137 (262)
                      .
T Consensus       299 p  299 (425)
T d2okca1         299 P  299 (425)
T ss_dssp             E
T ss_pred             c
Confidence            3

>d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap methylase
domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5
species: Dengue virus 2 [TaxId: 11060]

Probab=97.99  E-value=5.7e-06  Score=65.59  Aligned_cols=96  Identities=10%  Similarity=-0.011  Sum_probs=60.3

Q ss_pred             CCCCCeEEEEcCcccHhHHHHHhhC--CeEEEEcCCHHHHHHHh--c-C--CCceEEeCCCCchhhhhhccCCCCceeeE
Q 037961           31 TPKRNLAWDVGTRSGQAAASLAQIY--QHVIATDTSPKQLKFAI--K-L--PNIRYQLTPTMSITELEQNVATQSSVDLV  103 (262)
Q Consensus        31 ~~~~~~vlDvGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~--~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~D~V  103 (262)
                      +.+...|+|+|||+|.++..++...  ..+.|.++.-...+.-.  + .  .-+.+...     .++..+  +.+.+|+|
T Consensus        64 ~~~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG~d~~e~P~~~~~~~~ni~~~~~~-----~dv~~l--~~~~~D~v  136 (257)
T d2p41a1          64 VTPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSG-----VDVFFI--PPERCDTL  136 (257)
T ss_dssp             SCCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECS-----CCTTTS--CCCCCSEE
T ss_pred             ccCCCeEEEecCCCChHHHHHHhhcCCCceeEEEecCccccCCccccccccccccchhh-----hhHHhc--CCCcCCEE
Confidence            3677889999999999999998763  57888888532110000  0 0  11122211     123333  57789999


Q ss_pred             EEccccccC----Chh---HHHHHHHHhhcCCCeEEEE
Q 037961          104 TIASALHWF----DLP---QFYKQVKWVLKKPSGVIAA  134 (262)
Q Consensus       104 ~~~~~~~~~----d~~---~~l~~~~r~Lk~pgG~l~i  134 (262)
                      +|..+-.--    |..   .+++-+.+.|+ |||.|++
T Consensus       137 lcDm~ess~~~~vd~~Rtl~vLela~~wLk-~gg~Fvv  173 (257)
T d2p41a1         137 LCDIGESSPNPTVEAGRTLRVLNLVENWLS-NNTQFCV  173 (257)
T ss_dssp             EECCCCCCSSHHHHHHHHHHHHHHHHHHCC-TTCEEEE
T ss_pred             EeeCCCCCCCchhhhhhHHHHHHHHHHHcc-cCCEEEE
Confidence            997654311    222   26677788999 9999987

>d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Bacillus subtilis [TaxId: 1423]

Probab=97.87  E-value=5.5e-05  Score=59.95  Aligned_cols=94  Identities=23%  Similarity=0.246  Sum_probs=73.0

Q ss_pred             CCCeEEEEcCcccHhHHHHHh--hCCeEEEEcCCHHHHHHHhc------CCCceEEeCCCCchhhhhhcc---CCCCcee
Q 037961           33 KRNLAWDVGTRSGQAAASLAQ--IYQHVIATDTSPKQLKFAIK------LPNIRYQLTPTMSITELEQNV---ATQSSVD  101 (262)
Q Consensus        33 ~~~~vlDvGcG~G~~~~~l~~--~~~~v~~vD~s~~~~~~a~~------~~~~~~~~~~~~~~~~~~~~~---~~~~~~D  101 (262)
                      ....++|+|+|.|.-+..++=  ...+++.+|.+..=+...+.      +.++.++.+.      +|.+.   -..++||
T Consensus        70 ~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~L~L~n~~i~~~R------~E~~~~~~~~~~~~D  143 (239)
T d1xdza_          70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDR------AETFGQRKDVRESYD  143 (239)
T ss_dssp             GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESC------HHHHTTCTTTTTCEE
T ss_pred             CCCeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHHHHHHHhCCCCcEEEeeh------hhhccccccccccce
Confidence            457899999999999998875  36789999999988776653      4788887765      34332   1246899


Q ss_pred             eEEEccccccCChhHHHHHHHHhhcCCCeEEEEEe
Q 037961          102 LVTIASALHWFDLPQFYKQVKWVLKKPSGVIAAWT  136 (262)
Q Consensus       102 ~V~~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~  136 (262)
                      +|+|.-.   .+...+++-+...++ +||.++++-
T Consensus       144 ~v~sRAv---a~l~~ll~~~~~~l~-~~g~~i~~K  174 (239)
T d1xdza_         144 IVTARAV---ARLSVLSELCLPLVK-KNGLFVALK  174 (239)
T ss_dssp             EEEEECC---SCHHHHHHHHGGGEE-EEEEEEEEE
T ss_pred             EEEEhhh---hCHHHHHHHHhhhcc-cCCEEEEEC
Confidence            9998632   278889999999999 999988754

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=97.82  E-value=0.00013  Score=54.53  Aligned_cols=102  Identities=13%  Similarity=0.052  Sum_probs=69.4

Q ss_pred             CCCCCeEEEEcCcc-cHhHHHHHhh-CCeEEEEcCCHHHHHHHhcCCCceEEeCC--CCchhhh-hhcc-CCCCceeeEE
Q 037961           31 TPKRNLAWDVGTRS-GQAAASLAQI-YQHVIATDTSPKQLKFAIKLPNIRYQLTP--TMSITEL-EQNV-ATQSSVDLVT  104 (262)
Q Consensus        31 ~~~~~~vlDvGcG~-G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~--~~~~~~~-~~~~-~~~~~~D~V~  104 (262)
                      .+++.+||-+|||+ |.++.++++. |++|+++|.++.-++.+++...-.....+  .....+. +.+. .....+|+|+
T Consensus        24 ~~~g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~r~~~a~~~ga~~~~~~~~~~~~~~~~~~~~~~~~g~g~D~vi  103 (170)
T d1e3ja2          24 VQLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIGDLPNVTI  103 (170)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHSSSCCSEEE
T ss_pred             CCCCCEEEEEcccccchhhHhhHhhhcccccccchHHHHHHHHHHcCCcEEEeccccccccchhhhhhhcccccCCceee
Confidence            46788899999995 7777777764 88999999999999999986332222222  1111111 1111 1235689998


Q ss_pred             EccccccCChhHHHHHHHHhhcCCCeEEEEEecC
Q 037961          105 IASALHWFDLPQFYKQVKWVLKKPSGVIAAWTYT  138 (262)
Q Consensus       105 ~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~~  138 (262)
                      -.-     .-+..++.+.++|+ |||++++....
T Consensus       104 d~~-----g~~~~~~~a~~~~~-~~G~iv~~G~~  131 (170)
T d1e3ja2         104 DCS-----GNEKCITIGINITR-TGGTLMLVGMG  131 (170)
T ss_dssp             ECS-----CCHHHHHHHHHHSC-TTCEEEECSCC
T ss_pred             ecC-----CChHHHHHHHHHHh-cCCceEEEecC
Confidence            432     23568899999999 99999986644

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=97.78  E-value=8.5e-05  Score=57.12  Aligned_cols=106  Identities=19%  Similarity=0.137  Sum_probs=72.0

Q ss_pred             hCCCCCeEEEEcCcc-cHhHHHHHhh-CC-eEEEEcCCHHHHHHHhcCCCceEEeCCCCch-hhhhhccCCCCceeeEEE
Q 037961           30 KTPKRNLAWDVGTRS-GQAAASLAQI-YQ-HVIATDTSPKQLKFAIKLPNIRYQLTPTMSI-TELEQNVATQSSVDLVTI  105 (262)
Q Consensus        30 ~~~~~~~vlDvGcG~-G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~D~V~~  105 (262)
                      ..+++.+||-+|||+ |..+..+++. ++ +|+++|.++.-++.|++.-..........+. ....++. ....+|+++-
T Consensus        22 ~v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~i~~~t-~g~g~D~vid  100 (195)
T d1kola2          22 GVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGFEIADLSLDTPLHEQIAALL-GEPEVDCAVD  100 (195)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCEEEETTSSSCHHHHHHHHH-SSSCEEEEEE
T ss_pred             CCCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhccccEEEeCCCcCHHHHHHHHh-CCCCcEEEEE
Confidence            457889999999998 7777777764 54 8999999999999999873322222221111 1222221 3456899985


Q ss_pred             cccc------cc----CChhHHHHHHHHhhcCCCeEEEEEec
Q 037961          106 ASAL------HW----FDLPQFYKQVKWVLKKPSGVIAAWTY  137 (262)
Q Consensus       106 ~~~~------~~----~d~~~~l~~~~r~Lk~pgG~l~i~~~  137 (262)
                      ....      |+    ......++.+.++++ |||++.+...
T Consensus       101 ~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r-~gG~v~~~G~  141 (195)
T d1kola2         101 AVGFEARGHGHEGAKHEAPATVLNSLMQVTR-VAGKIGIPGL  141 (195)
T ss_dssp             CCCTTCBCSSTTGGGSBCTTHHHHHHHHHEE-EEEEEEECSC
T ss_pred             CccccccCCcccceeecCcHHHHHHHHHHHh-cCCEEEEeee
Confidence            4321      11    145679999999999 9999998653

>d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: M.EcoKI
species: Escherichia coli [TaxId: 562]

Probab=97.76  E-value=4.3e-05  Score=67.77  Aligned_cols=112  Identities=16%  Similarity=0.179  Sum_probs=76.1

Q ss_pred             hHHHHHHHHhhCC--CCCeEEEEcCcccHhHHHHHhh--------------------CCeEEEEcCCHHHHHHHhcC---
Q 037961           20 PKELFKLIASKTP--KRNLAWDVGTRSGQAAASLAQI--------------------YQHVIATDTSPKQLKFAIKL---   74 (262)
Q Consensus        20 p~~~~~~l~~~~~--~~~~vlDvGcG~G~~~~~l~~~--------------------~~~v~~vD~s~~~~~~a~~~---   74 (262)
                      |..+.+.+...+.  ++.+|+|-+||+|.+......+                    ...++|+|+++.+...|+-.   
T Consensus       149 P~~Iv~~mv~ll~~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~nl~l  228 (524)
T d2ar0a1         149 PRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLL  228 (524)
T ss_dssp             CHHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHT
T ss_pred             ccchhHhhhhcccCccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHHHHHHh
Confidence            7888888877663  5678999999999998776542                    12589999999999888731   


Q ss_pred             CCc--------eEEeCCCCchhhhhhccCCCCceeeEEEccccccC---C-----------h-hHHHHHHHHhhcCCCeE
Q 037961           75 PNI--------RYQLTPTMSITELEQNVATQSSVDLVTIASALHWF---D-----------L-PQFYKQVKWVLKKPSGV  131 (262)
Q Consensus        75 ~~~--------~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~~~~---d-----------~-~~~l~~~~r~Lk~pgG~  131 (262)
                      .+.        ....++.+.     .-.....+||+|+++..+.--   +           . -.+++.+.+.|+ |||+
T Consensus       229 ~~~~~~i~~~~~~~~~~~l~-----~d~~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk-~gGr  302 (524)
T d2ar0a1         229 HDIEGNLDHGGAIRLGNTLG-----SDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLH-PGGR  302 (524)
T ss_dssp             TTCCCBGGGTBSEEESCTTS-----HHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEE-EEEE
T ss_pred             hcccccccccchhhhhhhhh-----hcccccccceeEEecCCccccccccchhhhccccccccHHHHHHHHHhcc-ccCc
Confidence            111        112222110     011234679999999877411   1           1 128999999999 9999


Q ss_pred             EEEEec
Q 037961          132 IAAWTY  137 (262)
Q Consensus       132 l~i~~~  137 (262)
                      +++...
T Consensus       303 ~aiIlP  308 (524)
T d2ar0a1         303 AAVVVP  308 (524)
T ss_dssp             EEEEEE
T ss_pred             EEEEEe
Confidence            998543

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=97.72  E-value=0.00014  Score=54.98  Aligned_cols=100  Identities=15%  Similarity=0.078  Sum_probs=69.8

Q ss_pred             CCCCeEEEEcCcc-cHhHHHHHhh-CC-eEEEEcCCHHHHHHHhcCCCceEEeCCCCchh----hhhhccCCCCceeeEE
Q 037961           32 PKRNLAWDVGTRS-GQAAASLAQI-YQ-HVIATDTSPKQLKFAIKLPNIRYQLTPTMSIT----ELEQNVATQSSVDLVT  104 (262)
Q Consensus        32 ~~~~~vlDvGcG~-G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~D~V~  104 (262)
                      +++.+||-+|||+ |..+.++++. |+ +|+++|.++.-++.+++...-.++.....+..    .+.+.. ....+|+|+
T Consensus        27 ~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~i~~~~-~~~g~Dvvi  105 (182)
T d1vj0a2          27 FAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGADLTLNRRETSVEERRKAIMDIT-HGRGADFIL  105 (182)
T ss_dssp             CBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHHHT-TTSCEEEEE
T ss_pred             CCCCEEEEECCCccchhheecccccccccccccccccccccccccccceEEEeccccchHHHHHHHHHhh-CCCCceEEe
Confidence            5789999999996 8888888875 76 79999999999999998743333333221111    122222 244599998


Q ss_pred             EccccccCChhHHHHHHHHhhcCCCeEEEEEecC
Q 037961          105 IASALHWFDLPQFYKQVKWVLKKPSGVIAAWTYT  138 (262)
Q Consensus       105 ~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~~  138 (262)
                      -.-.     -...++.+.++|+ |||++++....
T Consensus       106 d~vG-----~~~~~~~a~~~l~-~~G~iv~~G~~  133 (182)
T d1vj0a2         106 EATG-----DSRALLEGSELLR-RGGFYSVAGVA  133 (182)
T ss_dssp             ECSS-----CTTHHHHHHHHEE-EEEEEEECCCC
T ss_pred             ecCC-----chhHHHHHHHHhc-CCCEEEEEeec
Confidence            4422     2467899999999 99999886643

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=97.72  E-value=0.0001  Score=55.59  Aligned_cols=102  Identities=16%  Similarity=0.129  Sum_probs=70.9

Q ss_pred             hCCCCCeEEEEcCcc-cHhHHHHHhh-CC-eEEEEcCCHHHHHHHhcCCCceEEeCC-CCchhhhhhccCCCCceeeEEE
Q 037961           30 KTPKRNLAWDVGTRS-GQAAASLAQI-YQ-HVIATDTSPKQLKFAIKLPNIRYQLTP-TMSITELEQNVATQSSVDLVTI  105 (262)
Q Consensus        30 ~~~~~~~vlDvGcG~-G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~D~V~~  105 (262)
                      ..+++.+||=+|||. |..+.++++. |+ +|+++|.++.-++.+++..-..++... .-....+.+.. ....+|+|+-
T Consensus        24 ~~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~lGa~~~i~~~~~~~~~~v~~~t-~g~G~D~vid  102 (174)
T d1jqba2          24 DIEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYGATDILNYKNGHIEDQVMKLT-NGKGVDRVIM  102 (174)
T ss_dssp             TCCTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHHTCSEEECGGGSCHHHHHHHHT-TTSCEEEEEE
T ss_pred             CCCCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhhCccccccccchhHHHHHHHHh-hccCcceEEE
Confidence            346788888899997 8888888885 65 799999999999999876433333322 11112222322 2345999985


Q ss_pred             ccccccCChhHHHHHHHHhhcCCCeEEEEEecC
Q 037961          106 ASALHWFDLPQFYKQVKWVLKKPSGVIAAWTYT  138 (262)
Q Consensus       106 ~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~~  138 (262)
                      .-.     -...++++.++++ |||++++....
T Consensus       103 ~~g-----~~~~~~~a~~~~~-~~G~iv~~G~~  129 (174)
T d1jqba2         103 AGG-----GSETLSQAVKMVK-PGGIISNINYH  129 (174)
T ss_dssp             CSS-----CTTHHHHHHHHEE-EEEEEEECCCC
T ss_pred             ccC-----CHHHHHHHHHHHh-cCCEEEEEeec
Confidence            432     2467899999999 99999986543

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.70  E-value=0.00014  Score=54.65  Aligned_cols=99  Identities=11%  Similarity=0.075  Sum_probs=69.9

Q ss_pred             CCCCCeEEEEcC-c-ccHhHHHHHhh-CCeEEEEcCCHHHHHHHhcCCCceEEeCCCCch-hhhhhccCCCCceeeEEEc
Q 037961           31 TPKRNLAWDVGT-R-SGQAAASLAQI-YQHVIATDTSPKQLKFAIKLPNIRYQLTPTMSI-TELEQNVATQSSVDLVTIA  106 (262)
Q Consensus        31 ~~~~~~vlDvGc-G-~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~D~V~~~  106 (262)
                      ..++.+||-.|+ | .|..+.++++. |++|++++-+++-++.+++..--.++.....+. ..+... .....+|+|+..
T Consensus        26 ~~~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~i~~~-t~~~g~d~v~d~  104 (174)
T d1yb5a2          26 VKAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQNGAHEVFNHREVNYIDKIKKY-VGEKGIDIIIEM  104 (174)
T ss_dssp             CCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETTSTTHHHHHHHH-HCTTCEEEEEES
T ss_pred             CCCCCEEEEEeccccccccccccccccCcccccccccccccccccccCcccccccccccHHHHhhhh-hccCCceEEeec
Confidence            358889999997 3 57888888875 899999999999899998874434443332111 111122 245679999965


Q ss_pred             cccccCChhHHHHHHHHhhcCCCeEEEEEec
Q 037961          107 SALHWFDLPQFYKQVKWVLKKPSGVIAAWTY  137 (262)
Q Consensus       107 ~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~  137 (262)
                      .+      ...++.+.++|+ |||+++.+..
T Consensus       105 ~g------~~~~~~~~~~l~-~~G~iv~~G~  128 (174)
T d1yb5a2         105 LA------NVNLSKDLSLLS-HGGRVIVVGS  128 (174)
T ss_dssp             CH------HHHHHHHHHHEE-EEEEEEECCC
T ss_pred             cc------HHHHHHHHhccC-CCCEEEEEec
Confidence            43      357888999999 9999998653

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.65  E-value=3.1e-05  Score=58.05  Aligned_cols=100  Identities=13%  Similarity=0.097  Sum_probs=67.1

Q ss_pred             hCCCCCeEEEEcCc-ccHhHHHHHh-hCCeEEEEcCCHHHHHHHhcCCCceEEeCCCCchhhhhhccCCCCceeeEEEcc
Q 037961           30 KTPKRNLAWDVGTR-SGQAAASLAQ-IYQHVIATDTSPKQLKFAIKLPNIRYQLTPTMSITELEQNVATQSSVDLVTIAS  107 (262)
Q Consensus        30 ~~~~~~~vlDvGcG-~G~~~~~l~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~  107 (262)
                      ..+++.+||-+|+| .|.++.++++ .|++|+++|.+++-++.+++.---.++.....  .+....  ..+.+|+|+..-
T Consensus        24 ~~~~g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~k~~~a~~lGa~~~i~~~~~--~~~~~~--~~~~~d~vi~~~   99 (168)
T d1piwa2          24 GCGPGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMKMGADHYIATLEE--GDWGEK--YFDTFDLIVVCA   99 (168)
T ss_dssp             TCSTTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTCSEEEEGGGT--SCHHHH--SCSCEEEEEECC
T ss_pred             CcCCCCEEEEECCCCcchhHHHHhhhccccccccccchhHHHHhhccCCcEEeeccch--HHHHHh--hhcccceEEEEe
Confidence            45688999999999 4888888876 49999999999999999988632233332210  111111  245699988543


Q ss_pred             ccccCChhHHHHHHHHhhcCCCeEEEEEec
Q 037961          108 ALHWFDLPQFYKQVKWVLKKPSGVIAAWTY  137 (262)
Q Consensus       108 ~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~  137 (262)
                      .-..   ...++.+.++|+ |||++++...
T Consensus       100 ~~~~---~~~~~~~~~~l~-~~G~iv~~G~  125 (168)
T d1piwa2         100 SSLT---DIDFNIMPKAMK-VGGRIVSISI  125 (168)
T ss_dssp             SCST---TCCTTTGGGGEE-EEEEEEECCC
T ss_pred             cCCc---cchHHHHHHHhh-ccceEEEecc
Confidence            3211   112456788999 9999998654

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.59  E-value=0.00015  Score=53.86  Aligned_cols=99  Identities=17%  Similarity=0.140  Sum_probs=67.1

Q ss_pred             CCCCCeEEEEcCcc-cHhHHHHHhh-CCeEEEEcCCHHHHHHHhcCCCceEEeCC-CCchhhhhhccCCCCceeeEEEcc
Q 037961           31 TPKRNLAWDVGTRS-GQAAASLAQI-YQHVIATDTSPKQLKFAIKLPNIRYQLTP-TMSITELEQNVATQSSVDLVTIAS  107 (262)
Q Consensus        31 ~~~~~~vlDvGcG~-G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~D~V~~~~  107 (262)
                      .+++.+||=+|||+ |..+..+++. |.+|+++|.++.-++.+++.....++... .-........  ..+.+|.|.+..
T Consensus        25 ~~~g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~~~~~~a~~~Ga~~~i~~~~~~~~~~~~~~--~~g~~~~i~~~~  102 (166)
T d1llua2          25 ARPGQWVAISGIGGLGHVAVQYARAMGLHVAAIDIDDAKLELARKLGASLTVNARQEDPVEAIQRD--IGGAHGVLVTAV  102 (166)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHH--HSSEEEEEECCS
T ss_pred             CCCCCEEEEeeccccHHHHHHHHHHcCCccceecchhhHHHhhhccCccccccccchhHHHHHHHh--hcCCcccccccc
Confidence            46788888899986 7777777775 89999999999999999987444444333 1111112221  233344444332


Q ss_pred             ccccCChhHHHHHHHHhhcCCCeEEEEEecC
Q 037961          108 ALHWFDLPQFYKQVKWVLKKPSGVIAAWTYT  138 (262)
Q Consensus       108 ~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~~  138 (262)
                      .      ...++.+.++|+ |||++++....
T Consensus       103 ~------~~~~~~~~~~l~-~~G~iv~~G~~  126 (166)
T d1llua2         103 S------NSAFGQAIGMAR-RGGTIALVGLP  126 (166)
T ss_dssp             C------HHHHHHHHTTEE-EEEEEEECCCC
T ss_pred             c------chHHHHHHHHhc-CCcEEEEEEec
Confidence            2      467889999999 99999986543

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.58  E-value=0.00023  Score=53.22  Aligned_cols=102  Identities=12%  Similarity=0.051  Sum_probs=69.2

Q ss_pred             CCCCCeEEEEcCcc-cHhHHHHHhh-CC-eEEEEcCCHHHHHHHhcCCCceEEeCCCCchhhhhh-cc-CCCCceeeEEE
Q 037961           31 TPKRNLAWDVGTRS-GQAAASLAQI-YQ-HVIATDTSPKQLKFAIKLPNIRYQLTPTMSITELEQ-NV-ATQSSVDLVTI  105 (262)
Q Consensus        31 ~~~~~~vlDvGcG~-G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~D~V~~  105 (262)
                      .+++..||=+|||+ |..+..+++. |+ +|+++|.++.-++.|++...-.+...+.....+... +. -....+|+|+-
T Consensus        24 ~~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~~~~~~~~~g~g~Dvvid  103 (171)
T d1pl8a2          24 VTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCKPEVTIE  103 (171)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSCCSEEEE
T ss_pred             CCCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHhCCcccccccccccccccccccccCCCCceEEEe
Confidence            46788999999987 6677777764 76 799999999999999987333333332111111111 10 02346899885


Q ss_pred             ccccccCChhHHHHHHHHhhcCCCeEEEEEecC
Q 037961          106 ASALHWFDLPQFYKQVKWVLKKPSGVIAAWTYT  138 (262)
Q Consensus       106 ~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~~  138 (262)
                      ...     -+..++.+.+.++ +||++++....
T Consensus       104 ~~G-----~~~~~~~a~~~~~-~gG~iv~~G~~  130 (171)
T d1pl8a2         104 CTG-----AEASIQAGIYATR-SGGTLVLVGLG  130 (171)
T ss_dssp             CSC-----CHHHHHHHHHHSC-TTCEEEECSCC
T ss_pred             ccC-----CchhHHHHHHHhc-CCCEEEEEecC
Confidence            433     3568899999999 99999986653

>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Hypothetical methyltransferase PH1374
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=97.57  E-value=0.00038  Score=57.38  Aligned_cols=100  Identities=17%  Similarity=0.186  Sum_probs=70.5

Q ss_pred             CCCCeEEEEcCcccHhHHHHHhh---CCeEEEEcCCHHHHHHHhc------CCCceEEeCCCCchhhhhhccCCCCceee
Q 037961           32 PKRNLAWDVGTRSGQAAASLAQI---YQHVIATDTSPKQLKFAIK------LPNIRYQLTPTMSITELEQNVATQSSVDL  102 (262)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~D~  102 (262)
                      .++..|||+.||+|.=|.+++..   ...+++.|+++.-+...++      ..++.....+      ....+...+.||.
T Consensus       115 ~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~~~i~~~~~d------~~~~~~~~~~fD~  188 (313)
T d1ixka_         115 KPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSS------SLHIGELNVEFDK  188 (313)
T ss_dssp             CTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSC------GGGGGGGCCCEEE
T ss_pred             CccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHhhcccccccc------ccccccccccccE
Confidence            57889999999999988888764   4579999999999887764      2455555443      3333345678999


Q ss_pred             EEEcccc------------ccC-C----------hhHHHHHHHHhhcCCCeEEEEEecC
Q 037961          103 VTIASAL------------HWF-D----------LPQFYKQVKWVLKKPSGVIAAWTYT  138 (262)
Q Consensus       103 V~~~~~~------------~~~-d----------~~~~l~~~~r~Lk~pgG~l~i~~~~  138 (262)
                      |+..-.+            .|- .          ..+.+..+.+.|| |||+|+-.+++
T Consensus       189 ILvDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk-~gG~lVYsTCS  246 (313)
T d1ixka_         189 ILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLK-PGGILVYSTCS  246 (313)
T ss_dssp             EEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEE-EEEEEEEEESC
T ss_pred             EEEccccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeC-CCcEEEEeecc
Confidence            9973221            122 2          1226778999999 99999876665

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=97.47  E-value=0.00041  Score=52.00  Aligned_cols=99  Identities=19%  Similarity=0.151  Sum_probs=69.2

Q ss_pred             CCCCCeEEEEcCcc-cHhHHHHHhh-CC-eEEEEcCCHHHHHHHhcCCCceEEeCC-CCchhhhhhccCCCCceeeEEEc
Q 037961           31 TPKRNLAWDVGTRS-GQAAASLAQI-YQ-HVIATDTSPKQLKFAIKLPNIRYQLTP-TMSITELEQNVATQSSVDLVTIA  106 (262)
Q Consensus        31 ~~~~~~vlDvGcG~-G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~D~V~~~  106 (262)
                      .+++.+||=+|||. |..+.++++. +. .|+++|.++.-++.+++.....++..+ .-....+...  .++.+|+|+-.
T Consensus        26 ~~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~Ga~~~i~~~~~~~~~~i~~~--t~gg~D~vid~  103 (174)
T d1f8fa2          26 VTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATHVINSKTQDPVAAIKEI--TDGGVNFALES  103 (174)
T ss_dssp             CCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHH--TTSCEEEEEEC
T ss_pred             CCCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHcCCeEEEeCCCcCHHHHHHHH--cCCCCcEEEEc
Confidence            46888899999986 6667777664 55 677899999999999886444555443 1111222222  35679999854


Q ss_pred             cccccCChhHHHHHHHHhhcCCCeEEEEEec
Q 037961          107 SALHWFDLPQFYKQVKWVLKKPSGVIAAWTY  137 (262)
Q Consensus       107 ~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~  137 (262)
                      -     .....++.+.++++ |+|++++...
T Consensus       104 ~-----G~~~~~~~~~~~~~-~~G~i~~~G~  128 (174)
T d1f8fa2         104 T-----GSPEILKQGVDALG-ILGKIAVVGA  128 (174)
T ss_dssp             S-----CCHHHHHHHHHTEE-EEEEEEECCC
T ss_pred             C-----CcHHHHHHHHhccc-CceEEEEEee
Confidence            2     23568899999999 9999998654

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=97.38  E-value=0.001  Score=49.51  Aligned_cols=101  Identities=17%  Similarity=0.125  Sum_probs=70.1

Q ss_pred             CCCCCeEEEEcCcc-cHhHHHHHh-hC-CeEEEEcCCHHHHHHHhcCCCceEEeCCCCchhhhhhccCCCCceeeEEEcc
Q 037961           31 TPKRNLAWDVGTRS-GQAAASLAQ-IY-QHVIATDTSPKQLKFAIKLPNIRYQLTPTMSITELEQNVATQSSVDLVTIAS  107 (262)
Q Consensus        31 ~~~~~~vlDvGcG~-G~~~~~l~~-~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~  107 (262)
                      .+++..||=+|||+ |..+..+++ .+ ..|+++|.++.-++.+++.....++..+.-........ .....+|+|+-..
T Consensus        30 ~~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~~~~-~~~~g~d~vid~~  108 (172)
T d1h2ba2          30 LYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLGADHVVDARRDPVKQVMEL-TRGRGVNVAMDFV  108 (172)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHTTCSEEEETTSCHHHHHHHH-TTTCCEEEEEESS
T ss_pred             cCCCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhcccceeecCcccHHHHHHHh-hCCCCceEEEEec
Confidence            46788899999997 666677765 35 57899999999999999875555554442111111111 1234599998543


Q ss_pred             ccccCChhHHHHHHHHhhcCCCeEEEEEecC
Q 037961          108 ALHWFDLPQFYKQVKWVLKKPSGVIAAWTYT  138 (262)
Q Consensus       108 ~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~~  138 (262)
                      .     -...++...++|+ +||++++....
T Consensus       109 g-----~~~~~~~a~~~l~-~~G~iv~~G~~  133 (172)
T d1h2ba2         109 G-----SQATVDYTPYLLG-RMGRLIIVGYG  133 (172)
T ss_dssp             C-----CHHHHHHGGGGEE-EEEEEEECCCS
T ss_pred             C-----cchHHHHHHHHHh-CCCEEEEEeCc
Confidence            3     3457899999999 99999986643

>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.37  E-value=0.00025  Score=57.65  Aligned_cols=101  Identities=14%  Similarity=0.156  Sum_probs=68.4

Q ss_pred             CCCCeEEEEcCcccHhHHHHHhhC--CeEEEEcCCHHHHHHHhcC------CCceEEeCCCCchhhhhhccCCCCceeeE
Q 037961           32 PKRNLAWDVGTRSGQAAASLAQIY--QHVIATDTSPKQLKFAIKL------PNIRYQLTPTMSITELEQNVATQSSVDLV  103 (262)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~D~V  103 (262)
                      .++..|||+++|+|.=|.+++..+  ..|+++|+++.-++..+++      .++.....+.    .... ....+.||.|
T Consensus       101 ~~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g~~~~~~~~~~~----~~~~-~~~~~~fd~I  175 (284)
T d1sqga2         101 QNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGR----YPSQ-WCGEQQFDRI  175 (284)
T ss_dssp             CTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTT----CTHH-HHTTCCEEEE
T ss_pred             cccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhcccccceeeecccc----ccch-hcccccccEE
Confidence            577899999999999999988764  5799999999988877642      3333332221    1111 1245689999


Q ss_pred             EEccccc------------cC-C----------hhHHHHHHHHhhcCCCeEEEEEecC
Q 037961          104 TIASALH------------WF-D----------LPQFYKQVKWVLKKPSGVIAAWTYT  138 (262)
Q Consensus       104 ~~~~~~~------------~~-d----------~~~~l~~~~r~Lk~pgG~l~i~~~~  138 (262)
                      ++.-.+-            |. .          ..+.+..+.+.|| |||+|+-.+++
T Consensus       176 L~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk-~gG~lvYsTCS  232 (284)
T d1sqga2         176 LLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLK-TGGTLVYATCS  232 (284)
T ss_dssp             EEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEE-EEEEEEEEESC
T ss_pred             EEeccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcC-CCceEEEeeec
Confidence            9732221            11 1          2226778889999 99999986665

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.29  E-value=0.00082  Score=49.66  Aligned_cols=100  Identities=13%  Similarity=0.058  Sum_probs=66.0

Q ss_pred             hCCCCCeEEEEcCcc-cHhHHHHHhh-CCeEEEEcCCHHHHHHHhcCCCceEEeCCCCch-hhhhhccCCCCceeeEEEc
Q 037961           30 KTPKRNLAWDVGTRS-GQAAASLAQI-YQHVIATDTSPKQLKFAIKLPNIRYQLTPTMSI-TELEQNVATQSSVDLVTIA  106 (262)
Q Consensus        30 ~~~~~~~vlDvGcG~-G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~D~V~~~  106 (262)
                      ..+++.+||=.|||+ |..+..+++. +++|+++|.++.-++.+++..-........... ......  ..+.+|.|+..
T Consensus        24 ~~~~g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~~r~~~~k~~Ga~~~~~~~~~~~~~~~~~~--~~~~~~~v~~~  101 (168)
T d1rjwa2          24 GAKPGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKELGADLVVNPLKEDAAKFMKEK--VGGVHAAVVTA  101 (168)
T ss_dssp             TCCTTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCSEEECTTTSCHHHHHHHH--HSSEEEEEESS
T ss_pred             CCCCCCEEEEeecccchhhhhHHHhcCCCeEeccCCCHHHhhhhhhcCcceecccccchhhhhcccc--cCCCceEEeec
Confidence            356888889999987 6666666664 789999999999999999863323332222111 111111  23445555432


Q ss_pred             cccccCChhHHHHHHHHhhcCCCeEEEEEecC
Q 037961          107 SALHWFDLPQFYKQVKWVLKKPSGVIAAWTYT  138 (262)
Q Consensus       107 ~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~~  138 (262)
                      .      -...+..+.+.|+ |||++++....
T Consensus       102 ~------~~~~~~~a~~~l~-~~G~i~~~g~~  126 (168)
T d1rjwa2         102 V------SKPAFQSAYNSIR-RGGACVLVGLP  126 (168)
T ss_dssp             C------CHHHHHHHHHHEE-EEEEEEECCCC
T ss_pred             C------CHHHHHHHHHHhc-cCCceEecccc
Confidence            2      2567899999999 99999986543

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=97.28  E-value=0.00086  Score=50.25  Aligned_cols=101  Identities=15%  Similarity=0.033  Sum_probs=71.0

Q ss_pred             CCCCCeEEEEcCcc-cHhHHHHHhh-CC-eEEEEcCCHHHHHHHhcCCCceEEeCC--CCchhhhhhccCCCCceeeEEE
Q 037961           31 TPKRNLAWDVGTRS-GQAAASLAQI-YQ-HVIATDTSPKQLKFAIKLPNIRYQLTP--TMSITELEQNVATQSSVDLVTI  105 (262)
Q Consensus        31 ~~~~~~vlDvGcG~-G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~D~V~~  105 (262)
                      .+++.+||=+|||+ |..+.++++. |+ .|+++|+++.-++.+++.-...+....  .......... ...+.+|+|+-
T Consensus        26 v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~-~~~~G~d~vie  104 (174)
T d1e3ia2          26 VTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATDCLNPRELDKPVQDVITE-LTAGGVDYSLD  104 (174)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHH-HHTSCBSEEEE
T ss_pred             CCCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHhCCCcccCCccchhhhhhhHhh-hhcCCCcEEEE
Confidence            46888999999998 8899888885 65 799999999999999987443443321  1111111111 12456899985


Q ss_pred             ccccccCChhHHHHHHHHhhcCCC-eEEEEEecC
Q 037961          106 ASALHWFDLPQFYKQVKWVLKKPS-GVIAAWTYT  138 (262)
Q Consensus       106 ~~~~~~~d~~~~l~~~~r~Lk~pg-G~l~i~~~~  138 (262)
                      ..     ..+.++.++.+.|+ +| |++++....
T Consensus       105 ~~-----G~~~~~~~a~~~~~-~g~G~~v~vG~~  132 (174)
T d1e3ia2         105 CA-----GTAQTLKAAVDCTV-LGWGSCTVVGAK  132 (174)
T ss_dssp             SS-----CCHHHHHHHHHTBC-TTTCEEEECCCS
T ss_pred             ec-----ccchHHHHHHHHhh-cCCeEEEecCCC
Confidence            32     24678999999999 86 999986543

>d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhiQ-like
domain: Hypothetical protein YhiQ
species: Shigella flexneri [TaxId: 623]

Probab=97.18  E-value=0.00063  Score=53.94  Aligned_cols=89  Identities=12%  Similarity=0.034  Sum_probs=59.7

Q ss_pred             CCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhc-------C--------CCceEEeCCCCchhhhhhccCCC
Q 037961           33 KRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIK-------L--------PNIRYQLTPTMSITELEQNVATQ   97 (262)
Q Consensus        33 ~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~-------~--------~~~~~~~~~~~~~~~~~~~~~~~   97 (262)
                      ...+|||+-||.|.-+..++..|++|+++|-++.+....+.       .        .+++++.+|     ..+.+.-..
T Consensus        88 ~~~~VlD~TaGlG~Da~vlA~~G~~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~D-----s~~~L~~~~  162 (250)
T d2oyra1          88 YLPDVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHAS-----SLTALTDIT  162 (250)
T ss_dssp             BCCCEEETTCTTCHHHHHHHHHTCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESC-----HHHHSTTCS
T ss_pred             CCCEEEECCCcccHHHHHHHhCCCEEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCc-----HHHHHhccC
Confidence            34589999999999999999999999999999987654332       1        257788776     122222235


Q ss_pred             CceeeEEEccccccCChhHHHHHHHHhhc
Q 037961           98 SSVDLVTIASALHWFDLPQFYKQVKWVLK  126 (262)
Q Consensus        98 ~~~D~V~~~~~~~~~d~~~~l~~~~r~Lk  126 (262)
                      .+||+|+...++..-......++-.++|+
T Consensus       163 ~~~DvIYlDPMFp~~~Ksa~~kk~m~~l~  191 (250)
T d2oyra1         163 PRPQVVYLDPMFPHKQKSALVKKEMRVFQ  191 (250)
T ss_dssp             SCCSEEEECCCCCCCCC-----HHHHHHH
T ss_pred             CCCCEEEECCCCccccccccchhHHHHHH
Confidence            67999999888865543334444444444

>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TRM1-like
domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.13  E-value=0.00084  Score=56.55  Aligned_cols=100  Identities=10%  Similarity=0.098  Sum_probs=68.2

Q ss_pred             CCCeEEEEcCcccHhHHHHHhh-C-CeEEEEcCCHHHHHHHhcC---CCc---------eEEeCC---CCchhhhhhcc-
Q 037961           33 KRNLAWDVGTRSGQAAASLAQI-Y-QHVIATDTSPKQLKFAIKL---PNI---------RYQLTP---TMSITELEQNV-   94 (262)
Q Consensus        33 ~~~~vlDvGcG~G~~~~~l~~~-~-~~v~~vD~s~~~~~~a~~~---~~~---------~~~~~~---~~~~~~~~~~~-   94 (262)
                      ++.+|||..||+|..+...+.. + .+|+++|+|+..++.++++   .++         ....+.   .....|+..+. 
T Consensus        45 ~~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~~  124 (375)
T d2dula1          45 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA  124 (375)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred             CCCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhhhH
Confidence            5578999999999999976653 3 4899999999999999863   111         000000   00112222221 


Q ss_pred             CCCCceeeEEEccccccC-ChhHHHHHHHHhhcCCCeEEEEEec
Q 037961           95 ATQSSVDLVTIASALHWF-DLPQFYKQVKWVLKKPSGVIAAWTY  137 (262)
Q Consensus        95 ~~~~~~D~V~~~~~~~~~-d~~~~l~~~~r~Lk~pgG~l~i~~~  137 (262)
                      .....||+|....    + .+..++..+.+.++ .||.|.+...
T Consensus       125 ~~~~~fDvIDiDP----fGs~~pfldsAi~a~~-~~Gll~vTaT  163 (375)
T d2dula1         125 ERHRYFHFIDLDP----FGSPMEFLDTALRSAK-RRGILGVTAT  163 (375)
T ss_dssp             HSTTCEEEEEECC----SSCCHHHHHHHHHHEE-EEEEEEEEEC
T ss_pred             hhcCcCCcccCCC----CCCcHHHHHHHHHHhc-cCCEEEEEec
Confidence            1345799998764    4 67789999999999 8999998543

>d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Transcription factor sc-mtTFB
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.10  E-value=0.00044  Score=57.22  Aligned_cols=52  Identities=12%  Similarity=0.052  Sum_probs=44.0

Q ss_pred             CCCeEEEEcCcccHhHHHHHhhC--CeEEEEcCCHHHHHHHhc---CCCceEEeCCC
Q 037961           33 KRNLAWDVGTRSGQAAASLAQIY--QHVIATDTSPKQLKFAIK---LPNIRYQLTPT   84 (262)
Q Consensus        33 ~~~~vlDvGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~---~~~~~~~~~~~   84 (262)
                      ....|||+|+|.|.+|..|.+.+  .+|+++|+++..++..++   ..++.++.+|.
T Consensus        43 ~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~~~L~~~~~~~~~~ii~~D~   99 (322)
T d1i4wa_          43 EELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFEGSPLQILKRDP   99 (322)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTTTSSCEEECSCT
T ss_pred             CCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhccCCCcEEEeCch
Confidence            56789999999999999998863  489999999999998875   35688888873

>d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.PvuII N4 cytosine-specific DNA methyltransferase
species: Proteus vulgaris [TaxId: 585]

Probab=97.03  E-value=0.00036  Score=56.98  Aligned_cols=57  Identities=12%  Similarity=0.120  Sum_probs=50.3

Q ss_pred             CChHHHHHHHHhhC-CCCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhcC
Q 037961           18 NYPKELFKLIASKT-PKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKL   74 (262)
Q Consensus        18 ~yp~~~~~~l~~~~-~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~   74 (262)
                      .-|.+|+++|.... +++..|||.-||+|+.+......+.+.+|+|++++.++.++++
T Consensus       234 ~kP~~L~~rlI~~~s~~gdiVlDpF~GSGTT~~AA~~lgR~~Ig~El~~~y~~~a~~R  291 (320)
T d1booa_         234 RFPAKLPEFFIRMLTEPDDLVVDIFGGSNTTGLVAERESRKWISFEMKPEYVAASAFR  291 (320)
T ss_dssp             CCCTHHHHHHHHHHCCTTCEEEETTCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHGG
T ss_pred             cCchHHHHHhhhhcccCCCEEEecCCCCcHHHHHHHHcCCcEEEEeCCHHHHHHHHHH
Confidence            34778888877654 6889999999999999999999999999999999999999764

>d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: NOL1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.01  E-value=0.0015  Score=53.19  Aligned_cols=69  Identities=16%  Similarity=0.170  Sum_probs=50.5

Q ss_pred             CCCCeEEEEcCcccHhHHHHHhh---CCeEEEEcCCHHHHHHHhcC------CCceEEeCCCCchhhhhhccC---CCCc
Q 037961           32 PKRNLAWDVGTRSGQAAASLAQI---YQHVIATDTSPKQLKFAIKL------PNIRYQLTPTMSITELEQNVA---TQSS   99 (262)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~~~~~~~---~~~~   99 (262)
                      .++.+|||++||+|.=|.+++..   ...|+++|+++.-++.++++      .++.+...|      +..+..   ..+.
T Consensus        93 ~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~~~~~~~~~d------~~~~~~~~~~~~~  166 (293)
T d2b9ea1          93 PPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEED------FLAVSPSDPRYHE  166 (293)
T ss_dssp             CTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECC------GGGSCTTCGGGTT
T ss_pred             CccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCccceeeeehh------hhhhcccccccce
Confidence            47788999999999988888764   56899999999988877642      566666654      222211   2357


Q ss_pred             eeeEEEc
Q 037961          100 VDLVTIA  106 (262)
Q Consensus       100 ~D~V~~~  106 (262)
                      ||.|++.
T Consensus       167 fD~VL~D  173 (293)
T d2b9ea1         167 VHYILLD  173 (293)
T ss_dssp             EEEEEEC
T ss_pred             eeEEeec
Confidence            9999874

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=96.95  E-value=0.0011  Score=49.06  Aligned_cols=97  Identities=21%  Similarity=0.142  Sum_probs=68.8

Q ss_pred             hCCCCCeEEEEcCcc-cHhHHHHHhh-CCeEEEEcCCHHHHHHHhcCCCceEEeCCCCchhhhhhccCCCCceeeEEEcc
Q 037961           30 KTPKRNLAWDVGTRS-GQAAASLAQI-YQHVIATDTSPKQLKFAIKLPNIRYQLTPTMSITELEQNVATQSSVDLVTIAS  107 (262)
Q Consensus        30 ~~~~~~~vlDvGcG~-G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~  107 (262)
                      ..+++.+||=+|||+ |.++.++++. |++++++|.+++-++.+++.-.-.++....   .+...  .....+|.|+-..
T Consensus        27 ~~~~G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~~~~~a~~lGad~~i~~~~---~~~~~--~~~~~~D~vid~~  101 (168)
T d1uufa2          27 QAGPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKALGADEVVNSRN---ADEMA--AHLKSFDFILNTV  101 (168)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTCSEEEETTC---HHHHH--TTTTCEEEEEECC
T ss_pred             CCCCCCEEEEeccchHHHHHHHHhhcccccchhhccchhHHHHHhccCCcEEEECch---hhHHH--HhcCCCceeeeee
Confidence            346888999999986 8888888874 889999999999988888764334443321   11111  1235799988543


Q ss_pred             ccccCChhHHHHHHHHhhcCCCeEEEEEec
Q 037961          108 ALHWFDLPQFYKQVKWVLKKPSGVIAAWTY  137 (262)
Q Consensus       108 ~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~  137 (262)
                      .     -...++...++|+ +||+++++..
T Consensus       102 g-----~~~~~~~~~~~l~-~~G~iv~~G~  125 (168)
T d1uufa2         102 A-----APHNLDDFTTLLK-RDGTMTLVGA  125 (168)
T ss_dssp             S-----SCCCHHHHHTTEE-EEEEEEECCC
T ss_pred             e-----cchhHHHHHHHHh-cCCEEEEecc
Confidence            2     2346788899999 9999998654

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

Probab=96.88  E-value=0.00083  Score=52.97  Aligned_cols=56  Identities=20%  Similarity=0.222  Sum_probs=50.6

Q ss_pred             CChHHHHHHHHhhC-CCCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhc
Q 037961           18 NYPKELFKLIASKT-PKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIK   73 (262)
Q Consensus        18 ~yp~~~~~~l~~~~-~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~   73 (262)
                      ..|.++++.+.... .++..|||--||+|+.+......+.+.+|+|++++.++.|++
T Consensus       196 ~kP~~L~~~lI~~~s~~gd~VlDpF~GSGTT~~aa~~~~R~~ig~El~~~y~~~a~~  252 (256)
T d1g60a_         196 PKPRDLIERIIRASSNPNDLVLDCFMGSGTTAIVAKKLGRNFIGCDMNAEYVNQANF  252 (256)
T ss_dssp             CCCHHHHHHHHHHHCCTTCEEEESSCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             ccchhHHHHHHHHhCCCCCEEEECCCCchHHHHHHHHcCCeEEEEeCCHHHHHHHHH
Confidence            47889988887765 688999999999999999999999999999999999999875

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=96.84  E-value=0.0096  Score=44.07  Aligned_cols=98  Identities=12%  Similarity=0.067  Sum_probs=67.6

Q ss_pred             CCCCCeEEEEcCc--ccHhHHHHHhh-CCeEEEEcCCHHHHHHHhcCCCceEEeCCCCc-hhhhhhccCCCCceeeEEEc
Q 037961           31 TPKRNLAWDVGTR--SGQAAASLAQI-YQHVIATDTSPKQLKFAIKLPNIRYQLTPTMS-ITELEQNVATQSSVDLVTIA  106 (262)
Q Consensus        31 ~~~~~~vlDvGcG--~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~D~V~~~  106 (262)
                      ++++.+||=.|+|  .|..+.++++. |++|++++.|++-++.+++...-.++..+..+ .+.+.++. ....+|+|+-.
T Consensus        26 l~~g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~k~~~~~~lGa~~vi~~~~~d~~~~v~~~t-~g~g~d~v~d~  104 (179)
T d1qora2          26 IKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALKAGAWQVINYREEDLVERLKEIT-GGKKVRVVYDS  104 (179)
T ss_dssp             CCTTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHT-TTCCEEEEEEC
T ss_pred             CCCCCEEEEEccccccchHHHHHHHHhCCeEeecccchHHHHHHHhcCCeEEEECCCCCHHHHHHHHh-CCCCeEEEEeC
Confidence            4678888888666  47788888775 89999999999999999876433444333111 12222222 35579998854


Q ss_pred             cccccCChhHHHHHHHHhhcCCCeEEEEEe
Q 037961          107 SALHWFDLPQFYKQVKWVLKKPSGVIAAWT  136 (262)
Q Consensus       107 ~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~  136 (262)
                      ..      ...+..+.+.|+ ++|++++..
T Consensus       105 ~g------~~~~~~~~~~l~-~~G~~v~~g  127 (179)
T d1qora2         105 VG------RDTWERSLDCLQ-RRGLMVSFG  127 (179)
T ss_dssp             SC------GGGHHHHHHTEE-EEEEEEECC
T ss_pred             cc------HHHHHHHHHHHh-cCCeeeecc
Confidence            33      245788999999 999988744

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=96.78  E-value=0.0025  Score=47.10  Aligned_cols=101  Identities=14%  Similarity=0.078  Sum_probs=67.3

Q ss_pred             CCCCCeEEEEcC-c-ccHhHHHHHh-hC-CeEEEEcCCHHHHHHHhcCCCceEEeCCCCc-hhhhhhccCCCCceeeEEE
Q 037961           31 TPKRNLAWDVGT-R-SGQAAASLAQ-IY-QHVIATDTSPKQLKFAIKLPNIRYQLTPTMS-ITELEQNVATQSSVDLVTI  105 (262)
Q Consensus        31 ~~~~~~vlDvGc-G-~G~~~~~l~~-~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~D~V~~  105 (262)
                      .+++.+||=+|| | .|.++..+++ .+ ..|+++|.++.-++.+++..--.++..+..+ ........ ..+.+|+|+-
T Consensus        25 ~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~-~~~~~d~vid  103 (170)
T d1jvba2          25 LDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGADYVINASMQDPLAEIRRIT-ESKGVDAVID  103 (170)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHT-TTSCEEEEEE
T ss_pred             CCCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHcCCceeeccCCcCHHHHHHHHh-hcccchhhhc
Confidence            467889999997 4 4666666665 45 6999999999999999876322333333111 11222221 3456999985


Q ss_pred             ccccccCChhHHHHHHHHhhcCCCeEEEEEecC
Q 037961          106 ASALHWFDLPQFYKQVKWVLKKPSGVIAAWTYT  138 (262)
Q Consensus       106 ~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~~  138 (262)
                      ...     -...++.+.+.++ |||++++....
T Consensus       104 ~~g-----~~~~~~~a~~~l~-~~G~iv~~G~~  130 (170)
T d1jvba2         104 LNN-----SEKTLSVYPKALA-KQGKYVMVGLF  130 (170)
T ss_dssp             SCC-----CHHHHTTGGGGEE-EEEEEEECCSS
T ss_pred             ccc-----cchHHHhhhhhcc-cCCEEEEeccc
Confidence            432     3567788899999 99999986543

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=96.69  E-value=0.0049  Score=46.07  Aligned_cols=98  Identities=14%  Similarity=0.080  Sum_probs=68.6

Q ss_pred             CCCCCeEEEEcCcc--cHhHHHHHhh-CCeEEEEcCCHHHHHHHhcCCCceEEeCC-CCchhhhhhccCCCCceeeEEEc
Q 037961           31 TPKRNLAWDVGTRS--GQAAASLAQI-YQHVIATDTSPKQLKFAIKLPNIRYQLTP-TMSITELEQNVATQSSVDLVTIA  106 (262)
Q Consensus        31 ~~~~~~vlDvGcG~--G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~D~V~~~  106 (262)
                      ++++++||=.|++.  |..+.++++. |++|++++-+++-++.+++...-..+..+ .......... .....+|+|+-.
T Consensus        27 v~~G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~~~~~-~~~~Gvd~v~D~  105 (182)
T d1v3va2          27 VKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQIGFDAAFNYKTVNSLEEALKK-ASPDGYDCYFDN  105 (182)
T ss_dssp             CCSSCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETTSCSCHHHHHHH-HCTTCEEEEEES
T ss_pred             CCCCCEEEEEeCCCchhHHHHHHHHccCCEEEEeCCCHHHHHHHHhhhhhhhcccccccHHHHHHHH-hhcCCCceeEEe
Confidence            35788999878754  6777778775 89999999999999999887444444333 2111122222 134569999854


Q ss_pred             cccccCChhHHHHHHHHhhcCCCeEEEEEe
Q 037961          107 SALHWFDLPQFYKQVKWVLKKPSGVIAAWT  136 (262)
Q Consensus       107 ~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~  136 (262)
                      -.      .+.++++.++|+ |||+++++.
T Consensus       106 vG------~~~~~~~~~~l~-~~G~~v~~G  128 (182)
T d1v3va2         106 VG------GEFLNTVLSQMK-DFGKIAICG  128 (182)
T ss_dssp             SC------HHHHHHHGGGEE-EEEEEEECC
T ss_pred             cC------chhhhhhhhhcc-CCCeEEeec
Confidence            32      457899999999 999999865

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.69  E-value=0.0061  Score=45.36  Aligned_cols=98  Identities=16%  Similarity=0.102  Sum_probs=67.1

Q ss_pred             CCCCCeEEEEcC-c-ccHhHHHHHhh-CCeEEEEcCCHHHHHHHhcCCCceEEeCCCCch-hhhhhccCCCCceeeEEEc
Q 037961           31 TPKRNLAWDVGT-R-SGQAAASLAQI-YQHVIATDTSPKQLKFAIKLPNIRYQLTPTMSI-TELEQNVATQSSVDLVTIA  106 (262)
Q Consensus        31 ~~~~~~vlDvGc-G-~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~D~V~~~  106 (262)
                      ..++.+||=.|. | .|.++.++++. |+++++++-+++-.+.+++...-..+.....+. ..+.+.. ....+|+|+..
T Consensus        23 ~~~g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~~~~~~l~~~Ga~~vi~~~~~~~~~~v~~~t-~~~g~d~v~d~  101 (183)
T d1pqwa_          23 LSPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSRLGVEYVGDSRSVDFADEILELT-DGYGVDVVLNS  101 (183)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHTTCCSEEEETTCSTHHHHHHHHT-TTCCEEEEEEC
T ss_pred             CCCCCEEEEECCCCCcccccchhhccccccceeeecccccccccccccccccccCCccCHHHHHHHHh-CCCCEEEEEec
Confidence            357788888763 4 47888888875 899999998998889998763333333221111 2222221 34579999975


Q ss_pred             cccccCChhHHHHHHHHhhcCCCeEEEEEe
Q 037961          107 SALHWFDLPQFYKQVKWVLKKPSGVIAAWT  136 (262)
Q Consensus       107 ~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~  136 (262)
                      ..      .+.++++.++|+ ++|+++.+.
T Consensus       102 ~g------~~~~~~~~~~l~-~~G~~v~~G  124 (183)
T d1pqwa_         102 LA------GEAIQRGVQILA-PGGRFIELG  124 (183)
T ss_dssp             CC------THHHHHHHHTEE-EEEEEEECS
T ss_pred             cc------chHHHHHHHHhc-CCCEEEEEc
Confidence            44      457888999999 999998854

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=96.66  E-value=0.0086  Score=44.42  Aligned_cols=102  Identities=16%  Similarity=0.047  Sum_probs=66.5

Q ss_pred             CCCCCeEEEEcCcc-cHhHHHHHhh-C-CeEEEEcCCHHHHHHHhcCCCceEEeCC--CCchhhhhhccCCCCceeeEEE
Q 037961           31 TPKRNLAWDVGTRS-GQAAASLAQI-Y-QHVIATDTSPKQLKFAIKLPNIRYQLTP--TMSITELEQNVATQSSVDLVTI  105 (262)
Q Consensus        31 ~~~~~~vlDvGcG~-G~~~~~l~~~-~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~D~V~~  105 (262)
                      .+++.+||=+|||. |..+.++++. | .+|+++|.++.-++.++++-...++...  .......... ..++.+|.|+-
T Consensus        25 ~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~lGa~~~i~~~~~d~~~~~~~~~-~~~~G~d~vid  103 (174)
T d1p0fa2          25 VTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATECLNPKDYDKPIYEVICE-KTNGGVDYAVE  103 (174)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHH-HTTSCBSEEEE
T ss_pred             CCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHHcCCcEEEcCCCchhHHHHHHHH-hcCCCCcEEEE
Confidence            46889999999997 6666666664 6 4799999999999999987444444322  1111111111 13456899885


Q ss_pred             ccccccCChhHHHHHHHHhhcCCCeEEEEEecC
Q 037961          106 ASALHWFDLPQFYKQVKWVLKKPSGVIAAWTYT  138 (262)
Q Consensus       106 ~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~~  138 (262)
                      .-     .....+.+....+++++|++++....
T Consensus       104 ~~-----g~~~~~~~~~~~~~~~~G~~v~vG~~  131 (174)
T d1p0fa2         104 CA-----GRIETMMNALQSTYCGSGVTVVLGLA  131 (174)
T ss_dssp             CS-----CCHHHHHHHHHTBCTTTCEEEECCCC
T ss_pred             cC-----CCchHHHHHHHHHHHhcCceEEEEEe
Confidence            42     33567777777776256999986643

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=96.56  E-value=0.0056  Score=45.62  Aligned_cols=102  Identities=11%  Similarity=0.006  Sum_probs=63.9

Q ss_pred             CCCCCeEEEEcCcc-cHhHHHHHhh-C-CeEEEEcCCHHHHHHHhcCCCceEEeCC--CCchhhhhhccCCCCceeeEEE
Q 037961           31 TPKRNLAWDVGTRS-GQAAASLAQI-Y-QHVIATDTSPKQLKFAIKLPNIRYQLTP--TMSITELEQNVATQSSVDLVTI  105 (262)
Q Consensus        31 ~~~~~~vlDvGcG~-G~~~~~l~~~-~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~D~V~~  105 (262)
                      .+++.+|+=+|||. |..+.++++. + .+|+++|.+++-++.|+++-...++...  ........... ....+|.|+-
T Consensus        27 ~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~GA~~~in~~~~~~~~~~~~~~~-~g~G~d~vi~  105 (176)
T d1d1ta2          27 VKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVGATECISPKDSTKPISEVLSEM-TGNNVGYTFE  105 (176)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHH-HTSCCCEEEE
T ss_pred             CCCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhcCCcEEECccccchHHHHHHHHh-ccccceEEEE
Confidence            46889999999996 6666666664 5 5899999999999999987443343322  11111111211 2446898885


Q ss_pred             ccccccCChhHHHHHHHHhhcCCCeEEEEEecC
Q 037961          106 ASALHWFDLPQFYKQVKWVLKKPSGVIAAWTYT  138 (262)
Q Consensus       106 ~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~~  138 (262)
                      ...     ....+++....+.+++|++++....
T Consensus       106 ~~g-----~~~~~~~a~~~~~~~~G~~v~vG~~  133 (176)
T d1d1ta2         106 VIG-----HLETMIDALASCHMNYGTSVVVGVP  133 (176)
T ss_dssp             CSC-----CHHHHHHHHTTSCTTTCEEEECSCC
T ss_pred             eCC-----chHHHHHHHHHhhcCCeEEEEEEcc
Confidence            422     2445555555554166999986543

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=96.55  E-value=0.0017  Score=51.70  Aligned_cols=57  Identities=19%  Similarity=0.169  Sum_probs=50.5

Q ss_pred             CCChHHHHHHHHhhC-CCCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhc
Q 037961           17 PNYPKELFKLIASKT-PKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIK   73 (262)
Q Consensus        17 p~yp~~~~~~l~~~~-~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~   73 (262)
                      ...|.++++.+.... .++..|||.-||+|+.+.+....+.+.+|+|+++..++.|++
T Consensus       190 ~~kP~~L~~~~I~~~s~~gdiVLDpF~GSGTT~~Aa~~lgR~~ig~El~~~y~~~a~~  247 (279)
T d1eg2a_         190 TQKPAAVIERLVRALSHPGSTVLDFFAGSGVTARVAIQEGRNSICTDAAPVFKEYYQK  247 (279)
T ss_dssp             TCCCHHHHHHHHHHHSCTTCEEEETTCTTCHHHHHHHHHTCEEEEEESSTHHHHHHHH
T ss_pred             cccchhHHHHHHHhhcCCCCEEEecCCCCcHHHHHHHHhCCeEEEEeCCHHHHHHHHH
Confidence            346888888887765 689999999999999999999999999999999999998875

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=96.05  E-value=0.0048  Score=45.73  Aligned_cols=94  Identities=16%  Similarity=0.119  Sum_probs=62.7

Q ss_pred             CCCCCeEEEEcC-cc-cHhHHHHHhh-CCeEEEEcCCHHHHHHHhcCCCceEEeCCCCchhhhhhccCCCCceeeEEEcc
Q 037961           31 TPKRNLAWDVGT-RS-GQAAASLAQI-YQHVIATDTSPKQLKFAIKLPNIRYQLTPTMSITELEQNVATQSSVDLVTIAS  107 (262)
Q Consensus        31 ~~~~~~vlDvGc-G~-G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~  107 (262)
                      .+++.+||=.|+ |. |..+.++++. |++|++++.+++-++.+++...-..+...+    ..+... ....+|+|+-..
T Consensus        25 ~~~g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~~~~~~~~lGa~~~i~~~~----~~~~~~-~~~g~D~v~d~~   99 (171)
T d1iz0a2          25 ARPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLALGAEEAATYAE----VPERAK-AWGGLDLVLEVR   99 (171)
T ss_dssp             CCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHHTTCSEEEEGGG----HHHHHH-HTTSEEEEEECS
T ss_pred             CCCCCEEEEEeccccchhhhhhhhcccccccccccccccccccccccccceeeehhh----hhhhhh-cccccccccccc
Confidence            468888888884 44 7788888775 899999999999888888763222222211    111111 234699998532


Q ss_pred             ccccCChhHHHHHHHHhhcCCCeEEEEEec
Q 037961          108 ALHWFDLPQFYKQVKWVLKKPSGVIAAWTY  137 (262)
Q Consensus       108 ~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~  137 (262)
                      .       ..++.+.+.|+ |||+++.+..
T Consensus       100 G-------~~~~~~~~~l~-~~G~~v~~G~  121 (171)
T d1iz0a2         100 G-------KEVEESLGLLA-HGGRLVYIGA  121 (171)
T ss_dssp             C-------TTHHHHHTTEE-EEEEEEEC--
T ss_pred             c-------hhHHHHHHHHh-cCCcEEEEeC
Confidence            2       24678889999 9999998653

>d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Salicylic acid carboxyl methyltransferase (SAMT)
domain: Salicylic acid carboxyl methyltransferase (SAMT)
species: Clarkia breweri [TaxId: 36903]

Probab=95.98  E-value=0.0051  Score=51.18  Aligned_cols=77  Identities=14%  Similarity=0.222  Sum_probs=47.3

Q ss_pred             CCCeEEEEcCcccHhHHHHHhh------------C------CeEEEEcCCHHHHHHHhc-CC------CceEEeCCCCch
Q 037961           33 KRNLAWDVGTRSGQAAASLAQI------------Y------QHVIATDTSPKQLKFAIK-LP------NIRYQLTPTMSI   87 (262)
Q Consensus        33 ~~~~vlDvGcG~G~~~~~l~~~------------~------~~v~~vD~s~~~~~~a~~-~~------~~~~~~~~~~~~   87 (262)
                      ..-+|.|+||.+|..|..+...            +      .+|.--|+-..--...-+ ++      ..-|..+-   -
T Consensus        51 ~~~~IADlGCS~G~Ntl~~v~~iI~~i~~~~~~~~~~~~pe~qvf~nDLP~NDFNtLF~~L~~~~~~~~~~f~~gv---p  127 (359)
T d1m6ex_          51 TRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGV---P  127 (359)
T ss_dssp             SEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEE---E
T ss_pred             CceEEEEeCCCCCccHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCcchHHHHHHhccccccCCCCeEEEec---C
Confidence            3356899999999888544321            1      246667766554443322 11      11122211   1


Q ss_pred             hhhhhccCCCCceeeEEEccccccC
Q 037961           88 TELEQNVATQSSVDLVTIASALHWF  112 (262)
Q Consensus        88 ~~~~~~~~~~~~~D~V~~~~~~~~~  112 (262)
                      +.+..--+|+++.|+++++.++||+
T Consensus       128 GSFY~rLfP~~Slh~~~Ss~alHWL  152 (359)
T d1m6ex_         128 GSFYGRLFPRNTLHFIHSSYSLMWL  152 (359)
T ss_dssp             SCSSSCCSCTTCBSCEEEESCTTBC
T ss_pred             CchhhhcCCCCceEEeeehhhhhhh
Confidence            3344555799999999999999997

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=95.97  E-value=0.025  Score=41.47  Aligned_cols=98  Identities=12%  Similarity=0.036  Sum_probs=65.1

Q ss_pred             CCCCCeEEEEcCcc-cHhHHHHHhh-C-CeEEEEcCCHHHHHHHhcCCCceEEeCC--CCchhh-hhhccCCCCceeeEE
Q 037961           31 TPKRNLAWDVGTRS-GQAAASLAQI-Y-QHVIATDTSPKQLKFAIKLPNIRYQLTP--TMSITE-LEQNVATQSSVDLVT  104 (262)
Q Consensus        31 ~~~~~~vlDvGcG~-G~~~~~l~~~-~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~D~V~  104 (262)
                      ++++.+||=.|||. |..+.++++. + ..|+++|.++.-++.++++-...++...  ...... ....  ..+.+|+|+
T Consensus        26 ~~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~lGa~~~i~~~~~~~~~~~~~~~~--~~~g~D~vi  103 (176)
T d2fzwa2          26 LEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATECINPQDFSKPIQEVLIEM--TDGGVDYSF  103 (176)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHH--TTSCBSEEE
T ss_pred             CCCCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHHhCCcEEEeCCchhhHHHHHHHHH--cCCCCcEee
Confidence            46889999999984 5566666664 5 5799999999999999986433443322  111111 1111  345699998


Q ss_pred             EccccccCChhHHHHHHHHhhcCCCeEEEEEe
Q 037961          105 IASALHWFDLPQFYKQVKWVLKKPSGVIAAWT  136 (262)
Q Consensus       105 ~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~  136 (262)
                      -...     ...+++.+..+++ +||.+.+..
T Consensus       104 d~~G-----~~~~~~~~~~~~~-~g~~~~~v~  129 (176)
T d2fzwa2         104 ECIG-----NVKVMRAALEACH-KGWGVSVVV  129 (176)
T ss_dssp             ECSC-----CHHHHHHHHHTBC-TTTCEEEEC
T ss_pred             ecCC-----CHHHHHHHHHhhc-CCceeEEEE
Confidence            6433     3568889999999 888877643

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=95.55  E-value=0.0065  Score=44.76  Aligned_cols=94  Identities=18%  Similarity=0.146  Sum_probs=65.9

Q ss_pred             CCCeEEEEcCcc-cHhHHHHHh-hCCeEEEEcCCHHHHHHHhcC--CCceEEeCCCCchhhhhhccCCCCceeeEEEccc
Q 037961           33 KRNLAWDVGTRS-GQAAASLAQ-IYQHVIATDTSPKQLKFAIKL--PNIRYQLTPTMSITELEQNVATQSSVDLVTIASA  108 (262)
Q Consensus        33 ~~~~vlDvGcG~-G~~~~~l~~-~~~~v~~vD~s~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~  108 (262)
                      ++..|+=+|+|. |..+...+. .|++|++.|.+++-+++.+..  .+++....+.   ..+++.   -...|+|+..-.
T Consensus        31 ~pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~~~l~~l~~~~~~~~~~~~~~~---~~l~~~---~~~aDivI~aal  104 (168)
T d1pjca1          31 KPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGSRVELLYSNS---AEIETA---VAEADLLIGAVL  104 (168)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGSEEEECCH---HHHHHH---HHTCSEEEECCC
T ss_pred             CCcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcHHHHHHHHHhhcccceeehhhh---hhHHHh---hccCcEEEEeee
Confidence            467889999996 777776665 499999999999999887652  4566655541   112211   134799997655


Q ss_pred             cccC-ChhHHHHHHHHhhcCCCeEEE
Q 037961          109 LHWF-DLPQFYKQVKWVLKKPSGVIA  133 (262)
Q Consensus       109 ~~~~-d~~~~l~~~~r~Lk~pgG~l~  133 (262)
                      +.-- .|.-.-+++.+.+| ||.+++
T Consensus       105 ipG~~aP~lIt~~mv~~Mk-~GSVIV  129 (168)
T d1pjca1         105 VPGRRAPILVPASLVEQMR-TGSVIV  129 (168)
T ss_dssp             CTTSSCCCCBCHHHHTTSC-TTCEEE
T ss_pred             cCCcccCeeecHHHHhhcC-CCcEEE
Confidence            4444 34446788999999 898886

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.54  E-value=0.014  Score=43.38  Aligned_cols=98  Identities=13%  Similarity=0.060  Sum_probs=65.8

Q ss_pred             CCCCeEEEEcCc--ccHhHHHHHhh-CCeEEEEcCCHHHHHHHhcCCCceEEeCCCCchhhhhhccCCCCceeeEEEccc
Q 037961           32 PKRNLAWDVGTR--SGQAAASLAQI-YQHVIATDTSPKQLKFAIKLPNIRYQLTPTMSITELEQNVATQSSVDLVTIASA  108 (262)
Q Consensus        32 ~~~~~vlDvGcG--~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~  108 (262)
                      +++.+||=.|++  .|.++.++++. |++|+++.-|++-++.+++.-.-..+..+.......  .....+.+|+|+=.-.
T Consensus        30 ~~g~~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s~~k~~~~~~lGa~~vi~~~~~~~~~~--~~~~~~gvD~vid~vg  107 (176)
T d1xa0a2          30 PERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLRVLGAKEVLAREDVMAERI--RPLDKQRWAAAVDPVG  107 (176)
T ss_dssp             GGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHHHTTCSEEEECC-----------CCSCCEEEEEECST
T ss_pred             CCCCEEEEEeccchHHHHHHHHHHHcCCceEEecCchHHHHHHHhcccceeeecchhHHHHH--HHhhccCcCEEEEcCC
Confidence            467788888864  46788888864 999999999999999998763333333221100111  1224568999885432


Q ss_pred             cccCChhHHHHHHHHhhcCCCeEEEEEecC
Q 037961          109 LHWFDLPQFYKQVKWVLKKPSGVIAAWTYT  138 (262)
Q Consensus       109 ~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~~  138 (262)
                            ...+.+..++|+ |||+++++...
T Consensus       108 ------g~~~~~~l~~l~-~~Griv~~G~~  130 (176)
T d1xa0a2         108 ------GRTLATVLSRMR-YGGAVAVSGLT  130 (176)
T ss_dssp             ------TTTHHHHHHTEE-EEEEEEECSCC
T ss_pred             ------chhHHHHHHHhC-CCceEEEeecc
Confidence                  346899999999 99999986654

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=95.52  E-value=0.035  Score=40.35  Aligned_cols=86  Identities=10%  Similarity=0.047  Sum_probs=57.4

Q ss_pred             eEEEEcCcc--cHhHHHHHhhCCeEEEEcCCHHHHHHHhcCCCceEEeCCCCchhhhhhccCCCCceeeEEEccccccCC
Q 037961           36 LAWDVGTRS--GQAAASLAQIYQHVIATDTSPKQLKFAIKLPNIRYQLTPTMSITELEQNVATQSSVDLVTIASALHWFD  113 (262)
Q Consensus        36 ~vlDvGcG~--G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~~~~d  113 (262)
                      +|.=||+|.  +.++..|.+.+.+|++.|.+++.++.+++...+.....+      .+..    ...|+|+.+-.  .-.
T Consensus         2 kI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~~~~~~~a~~~~~~~~~~~~------~~~~----~~~DiIilavp--~~~   69 (165)
T d2f1ka2           2 KIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVERQLVDEAGQD------LSLL----QTAKIIFLCTP--IQL   69 (165)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTSCSEEESC------GGGG----TTCSEEEECSC--HHH
T ss_pred             EEEEEeecHHHHHHHHHHHHCCCEEEEEECCchHHHHHHHhhccceeeee------cccc----cccccccccCc--Hhh
Confidence            456688884  456677888899999999999999988875433322221      2221    35799986433  224


Q ss_pred             hhHHHHHHHHhhcCCCeEEEE
Q 037961          114 LPQFYKQVKWVLKKPSGVIAA  134 (262)
Q Consensus       114 ~~~~l~~~~r~Lk~pgG~l~i  134 (262)
                      .+.+++++...|+ ++-.+.-
T Consensus        70 ~~~vl~~l~~~l~-~~~iv~~   89 (165)
T d2f1ka2          70 ILPTLEKLIPHLS-PTAIVTD   89 (165)
T ss_dssp             HHHHHHHHGGGSC-TTCEEEE
T ss_pred             hhhhhhhhhhhcc-cccceee
Confidence            5568888888888 6665543

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=95.30  E-value=0.084  Score=38.60  Aligned_cols=98  Identities=11%  Similarity=0.025  Sum_probs=62.7

Q ss_pred             CCCCCeEEEEcCcc-cHhHHHHHh-hC-CeEEEEcCCHHHHHHHhcCCCceEEeCC--CCch-hhhhhccCCCCceeeEE
Q 037961           31 TPKRNLAWDVGTRS-GQAAASLAQ-IY-QHVIATDTSPKQLKFAIKLPNIRYQLTP--TMSI-TELEQNVATQSSVDLVT  104 (262)
Q Consensus        31 ~~~~~~vlDvGcG~-G~~~~~l~~-~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~D~V~  104 (262)
                      .+++.+||=+|||. |..+..+++ .+ .+|+++|.++.-++.+++......+...  .... ......  ..+.+|+|+
T Consensus        26 vk~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~--~~~G~D~vi  103 (176)
T d2jhfa2          26 VTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVNPQDYKKPIQEVLTEM--SNGGVDFSF  103 (176)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHH--TTSCBSEEE
T ss_pred             CCCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHhCCeeEEecCCchhHHHHHHHHH--hcCCCCEEE
Confidence            46889999999975 334444444 34 6999999999999999987444444322  1111 111122  345799998


Q ss_pred             EccccccCChhHHHHHHHHhhcCCC-eEEEEEe
Q 037961          105 IASALHWFDLPQFYKQVKWVLKKPS-GVIAAWT  136 (262)
Q Consensus       105 ~~~~~~~~d~~~~l~~~~r~Lk~pg-G~l~i~~  136 (262)
                      -...     ....++.+...++ +| |.+.+..
T Consensus       104 d~~G-----~~~~~~~a~~~~~-~~~g~~~~~~  130 (176)
T d2jhfa2         104 EVIG-----RLDTMVTALSCCQ-EAYGVSVIVG  130 (176)
T ss_dssp             ECSC-----CHHHHHHHHHHBC-TTTCEEEECS
T ss_pred             ecCC-----chhHHHHHHHHHh-cCCcceEEec
Confidence            6543     2456777888888 65 5666533

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=94.64  E-value=0.1  Score=38.03  Aligned_cols=98  Identities=14%  Similarity=0.062  Sum_probs=60.5

Q ss_pred             CCCCCeEEEEcCccc-HhHHHHHh-h-CCeEEEEcCCHHHHHHHhcCCCceEEeCC-C-CchhhhhhccCCCCceeeEEE
Q 037961           31 TPKRNLAWDVGTRSG-QAAASLAQ-I-YQHVIATDTSPKQLKFAIKLPNIRYQLTP-T-MSITELEQNVATQSSVDLVTI  105 (262)
Q Consensus        31 ~~~~~~vlDvGcG~G-~~~~~l~~-~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~D~V~~  105 (262)
                      .+++.+|+=+|||.+ ..+..++. . +.+|+++|.+++-++.+++.--..++... . ......... ...+.+|+|+-
T Consensus        26 ~k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~~GAd~~in~~~~~~~~~~~~~~-~~~~G~d~vid  104 (175)
T d1cdoa2          26 VEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGATDFVNPNDHSEPISQVLSK-MTNGGVDFSLE  104 (175)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCCEEECGGGCSSCHHHHHHH-HHTSCBSEEEE
T ss_pred             CCCCCEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHHHcCCcEEEcCCCcchhHHHHHHh-hccCCcceeee
Confidence            468899999999984 44444444 3 45899999999999999987443444322 1 111111111 12456899985


Q ss_pred             ccccccCChhHHHHHHHHhhcCCC-eEEEEE
Q 037961          106 ASALHWFDLPQFYKQVKWVLKKPS-GVIAAW  135 (262)
Q Consensus       106 ~~~~~~~d~~~~l~~~~r~Lk~pg-G~l~i~  135 (262)
                      .-.     ...++..+...++ +| |++++.
T Consensus       105 ~~G-----~~~~~~~a~~~~~-~g~~~~~~~  129 (175)
T d1cdoa2         105 CVG-----NVGVMRNALESCL-KGWGVSVLV  129 (175)
T ss_dssp             CSC-----CHHHHHHHHHTBC-TTTCEEEEC
T ss_pred             ecC-----CHHHHHHHHHHhh-CCCcceeEE
Confidence            433     3556778888877 55 554443

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=94.58  E-value=0.018  Score=42.41  Aligned_cols=98  Identities=12%  Similarity=0.064  Sum_probs=64.4

Q ss_pred             CCCCeEEEEcC--cccHhHHHHHhh-CCeEEEEcCCHHHHHHHhcCCCceEEeCCCCchhhhhhccCCCCceeeEEEccc
Q 037961           32 PKRNLAWDVGT--RSGQAAASLAQI-YQHVIATDTSPKQLKFAIKLPNIRYQLTPTMSITELEQNVATQSSVDLVTIASA  108 (262)
Q Consensus        32 ~~~~~vlDvGc--G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~  108 (262)
                      +++..||=-|+  |.|.++.++++. |++|+++.-|++-.+.+++...-..+..++......  .....+.+|+|+-.-.
T Consensus        22 ~~~~~VLV~gaaGgVG~~avQlAk~~Ga~Viat~~s~~k~~~~~~lGad~vi~~~~~~~~~~--~~~~~~gvd~vid~vg   99 (167)
T d1tt7a2          22 PEKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYLKQLGASEVISREDVYDGTL--KALSKQQWQGAVDPVG   99 (167)
T ss_dssp             GGGCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTHHHHHHHTCSEEEEHHHHCSSCC--CSSCCCCEEEEEESCC
T ss_pred             CCCCEEEEeCCcchHHHHHHHHHHHcCCceEEEecCHHHHHHHHhhcccceEeccchhchhh--hcccCCCceEEEecCc
Confidence            34556776664  347888888885 999999999998888888753222222110000001  1123567999884422


Q ss_pred             cccCChhHHHHHHHHhhcCCCeEEEEEecC
Q 037961          109 LHWFDLPQFYKQVKWVLKKPSGVIAAWTYT  138 (262)
Q Consensus       109 ~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~~  138 (262)
                            ...+.+..+.|+ |+|+++++...
T Consensus       100 ------g~~~~~~~~~l~-~~G~iv~~G~~  122 (167)
T d1tt7a2         100 ------GKQLASLLSKIQ-YGGSVAVSGLT  122 (167)
T ss_dssp             ------THHHHHHHTTEE-EEEEEEECCCS
T ss_pred             ------HHHHHHHHHHhc-cCceEEEeecc
Confidence                  457899999999 99999986654

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=94.54  E-value=0.05  Score=37.93  Aligned_cols=92  Identities=14%  Similarity=0.057  Sum_probs=56.8

Q ss_pred             eEEEEcCcccHhHHHHH----hhCCeEEEEcCCHHHHHHHhcCCCceEEeCCCCchhhhhhccCCCCceeeEEEcccccc
Q 037961           36 LAWDVGTRSGQAAASLA----QIYQHVIATDTSPKQLKFAIKLPNIRYQLTPTMSITELEQNVATQSSVDLVTIASALHW  111 (262)
Q Consensus        36 ~vlDvGcG~G~~~~~l~----~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~~~  111 (262)
                      .|+=+|+  |.++..++    +.|.+|+.+|.+++.++.++...+..++.+|..+....+..++  ...|.+++...-. 
T Consensus         2 ~IvI~G~--G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~~~~~vi~Gd~~~~~~l~~~~i--~~a~~vv~~t~~d-   76 (132)
T d1lssa_           2 YIIIAGI--GRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDALVINGDCTKIKTLEDAGI--EDADMYIAVTGKE-   76 (132)
T ss_dssp             EEEEECC--SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCSSEEEESCTTSHHHHHHTTT--TTCSEEEECCSCH-
T ss_pred             EEEEECC--CHHHHHHHHHHHHCCCCcceecCChhhhhhhhhhhhhhhccCcccchhhhhhcCh--hhhhhhcccCCcH-
Confidence            4556666  55554444    4689999999999999987654477888888333334444443  4578888742211 


Q ss_pred             CChhHHHHHHHHhhcCCCeEEEE
Q 037961          112 FDLPQFYKQVKWVLKKPSGVIAA  134 (262)
Q Consensus       112 ~d~~~~l~~~~r~Lk~pgG~l~i  134 (262)
                       +.........+-+. +.-+++.
T Consensus        77 -~~N~~~~~~~k~~~-~~~iI~~   97 (132)
T d1lssa_          77 -EVNLMSSLLAKSYG-INKTIAR   97 (132)
T ss_dssp             -HHHHHHHHHHHHTT-CCCEEEE
T ss_pred             -HHHHHHHHHHHHcC-CceEEEE
Confidence             11224556667777 6655443

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=94.08  E-value=0.3  Score=35.12  Aligned_cols=90  Identities=20%  Similarity=0.248  Sum_probs=58.9

Q ss_pred             eEEEEcCcc--cHhHHHHHhhC--CeEEEEcCCHHHHHHHhcCCCceEEeCCCCchhhhhhccCCCCceeeEEEcccccc
Q 037961           36 LAWDVGTRS--GQAAASLAQIY--QHVIATDTSPKQLKFAIKLPNIRYQLTPTMSITELEQNVATQSSVDLVTIASALHW  111 (262)
Q Consensus        36 ~vlDvGcG~--G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~~~  111 (262)
                      .|+=+|||.  |.++..|.+.+  .+|++.|.+++.++.+++...+.....+      ....  .....|+|+.+...+ 
T Consensus         3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~~~~~~~~~------~~~~--~~~~~dlIila~p~~-   73 (171)
T d2g5ca2           3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTS------IAKV--EDFSPDFVMLSSPVR-   73 (171)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESC------GGGG--GGTCCSEEEECSCHH-
T ss_pred             EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhhcchhhhhh------hhhh--hccccccccccCCch-
Confidence            467799996  45666777766  4799999999999999876444333222      1111  233579998654432 


Q ss_pred             CChhHHHHHHHHhhcCCCeEEEEEe
Q 037961          112 FDLPQFYKQVKWVLKKPSGVIAAWT  136 (262)
Q Consensus       112 ~d~~~~l~~~~r~Lk~pgG~l~i~~  136 (262)
                       ....++.++...++ ++-.+.-..
T Consensus        74 -~~~~vl~~l~~~~~-~~~ii~d~~   96 (171)
T d2g5ca2          74 -TFREIAKKLSYILS-EDATVTDQG   96 (171)
T ss_dssp             -HHHHHHHHHHHHSC-TTCEEEECC
T ss_pred             -hhhhhhhhhhcccc-ccccccccc
Confidence             23457888888998 776655433

>d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=94.07  E-value=0.061  Score=39.75  Aligned_cols=95  Identities=14%  Similarity=0.025  Sum_probs=61.7

Q ss_pred             CCCeEEEEcC--cccHhHHHHHhh-CCeEEEEcCCHHHHHHHhcCCCceEEeCCCCchhhhhhccCCCCceeeEEEcccc
Q 037961           33 KRNLAWDVGT--RSGQAAASLAQI-YQHVIATDTSPKQLKFAIKLPNIRYQLTPTMSITELEQNVATQSSVDLVTIASAL  109 (262)
Q Consensus        33 ~~~~vlDvGc--G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~  109 (262)
                      ++..||=.|+  |.|..+.++++. |++|+++.-+++..+.+++...-.++..+.    +...-.+....+|.|+=.-  
T Consensus        31 ~~~~vlV~gasGGVG~~aiQlAk~~Ga~Via~~~~~~k~~~~~~lGad~vi~~~~----~~~~~~l~~~~~~~vvD~V--  104 (177)
T d1o89a2          31 QDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTHEYLKSLGASRVLPRDE----FAESRPLEKQVWAGAIDTV--  104 (177)
T ss_dssp             GGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHHHHTEEEEEEGGG----SSSCCSSCCCCEEEEEESS--
T ss_pred             CCCcEEEEEccccchHHHHHHHHHcCCCeEEEecchhHHHHHHhhcccccccccc----HHHHHHHHhhcCCeeEEEc--
Confidence            3446665553  357788888875 999999999999988888753323332221    0111123456678775221  


Q ss_pred             ccCChhHHHHHHHHhhcCCCeEEEEEecC
Q 037961          110 HWFDLPQFYKQVKWVLKKPSGVIAAWTYT  138 (262)
Q Consensus       110 ~~~d~~~~l~~~~r~Lk~pgG~l~i~~~~  138 (262)
                          -...+.+..+.|+ ++|+++.+...
T Consensus       105 ----gg~~~~~~l~~l~-~~Griv~~G~~  128 (177)
T d1o89a2         105 ----GDKVLAKVLAQMN-YGGCVAACGLA  128 (177)
T ss_dssp             ----CHHHHHHHHHTEE-EEEEEEECCCT
T ss_pred             ----chHHHHHHHHHhc-cccceEeeccc
Confidence                1357899999999 99999986643

>d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HaeIII
species: Haemophilus aegyptius [TaxId: 197575]

Probab=94.02  E-value=0.11  Score=41.40  Aligned_cols=68  Identities=9%  Similarity=-0.029  Sum_probs=49.2

Q ss_pred             eEEEEcCcccHhHHHHHhhCCeEE-EEcCCHHHHHHHhcCCCceEEeCC--CCchhhhhhccCCCCceeeEEEccccc
Q 037961           36 LAWDVGTRSGQAAASLAQIYQHVI-ATDTSPKQLKFAIKLPNIRYQLTP--TMSITELEQNVATQSSVDLVTIASALH  110 (262)
Q Consensus        36 ~vlDvGcG~G~~~~~l~~~~~~v~-~vD~s~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~D~V~~~~~~~  110 (262)
                      .|+|+-||.|.++..+...|.+++ ++|+++..++..+.+-.-....+|  .+.   .+.+    ..+|++++...++
T Consensus         2 k~~~lF~G~Gg~~~gl~~aG~~~~~a~e~d~~a~~~~~~N~~~~~~~~Di~~~~---~~~~----~~~dll~~g~PCq   72 (324)
T d1dcta_           2 NLISLFSGAGGLDLGFQKAGFRIICANEYDKSIWKTYESNHSAKLIKGDISKIS---SDEF----PKCDGIIGGPPCQ   72 (324)
T ss_dssp             EEEEESCSSCHHHHHHHHHTCEEEEEEECCHHHHHHHHHHCCSEEEESCTTTSC---GGGS----CCCSEEEECCCCT
T ss_pred             eEEEeCcCcCHHHHHHHHCCCEEEEEEeCCHHHHHHHHHHCCCCCccCChhhCC---HhHc----ccccEEeeccccc
Confidence            589999999999999988887755 999999999876654334556666  221   1222    3589999876665

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=93.97  E-value=0.042  Score=40.84  Aligned_cols=100  Identities=17%  Similarity=0.061  Sum_probs=62.4

Q ss_pred             CCCeEEEEcCcc-cHhHHHHHh-hCCeEEEEcCCHHHHHHHhcCC--CceEEeCC--CCc--hhhh------------hh
Q 037961           33 KRNLAWDVGTRS-GQAAASLAQ-IYQHVIATDTSPKQLKFAIKLP--NIRYQLTP--TMS--ITEL------------EQ   92 (262)
Q Consensus        33 ~~~~vlDvGcG~-G~~~~~l~~-~~~~v~~vD~s~~~~~~a~~~~--~~~~~~~~--~~~--~~~~------------~~   92 (262)
                      ++..|+=+|+|. |..+...+. .|++|++.|.++.-+++.+..-  .+......  ...  .+.+            +.
T Consensus        28 ~pa~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~~~~~~l~~l~~~~i~~~~~~~~~~~~~~gyA~~~s~~~~~~~~~~  107 (183)
T d1l7da1          28 PPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQAEA  107 (183)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHHTTCEECCC-----------------------CCHHHH
T ss_pred             CCcEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhhcceEEEeccccccccccccchhhcCHHHHHHHHHH
Confidence            567889999997 666666665 4999999999999998888641  11110000  000  0000            00


Q ss_pred             ccCCCCceeeEEEccccccC-ChhHHHHHHHHhhcCCCeEEE
Q 037961           93 NVATQSSVDLVTIASALHWF-DLPQFYKQVKWVLKKPSGVIA  133 (262)
Q Consensus        93 ~~~~~~~~D~V~~~~~~~~~-d~~~~l~~~~r~Lk~pgG~l~  133 (262)
                      +.-.-...|+|+..-.+.-- .|.-+-+++.+.+| ||.+++
T Consensus       108 l~~~l~~aDlVI~talipG~~aP~lit~~mv~~Mk-~GSVIV  148 (183)
T d1l7da1         108 VLKELVKTDIAITTALIPGKPAPVLITEEMVTKMK-PGSVII  148 (183)
T ss_dssp             HHHHHTTCSEEEECCCCTTSCCCCCSCHHHHTTSC-TTCEEE
T ss_pred             HHHHHHhhhhheeeeecCCcccceeehHHHHHhcC-CCcEEE
Confidence            00001257999977666555 44447788999999 899887

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.21  E-value=0.37  Score=37.07  Aligned_cols=78  Identities=17%  Similarity=0.178  Sum_probs=55.9

Q ss_pred             CCCeEEEEcCccc---HhHHHHHhhCCeEEEEcCCHHHHHHHh-cCCCceEEeCCCCchhhhhhccCCCCceeeEEEccc
Q 037961           33 KRNLAWDVGTRSG---QAAASLAQIYQHVIATDTSPKQLKFAI-KLPNIRYQLTPTMSITELEQNVATQSSVDLVTIASA  108 (262)
Q Consensus        33 ~~~~vlDvGcG~G---~~~~~l~~~~~~v~~vD~s~~~~~~a~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~  108 (262)
                      .++++|=-|++.|   ..++.|++.|++|+.+|.+++-++... +..++.....|..+..+.+..--.-++.|+++.+-.
T Consensus         6 ~GK~~lITGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~g~iDilVnnAg   85 (244)
T d1pr9a_           6 AGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVRECPGIEPVCVDLGDWEATERALGSVGPVDLLVNNAA   85 (244)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHSTTCEEEECCTTCHHHHHHHHTTCCCCCEEEECCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHHHHhCCceEEEeccc
Confidence            5678888998887   456677788999999999999887654 467788888773223344443334468999997655


Q ss_pred             cc
Q 037961          109 LH  110 (262)
Q Consensus       109 ~~  110 (262)
                      ..
T Consensus        86 ~~   87 (244)
T d1pr9a_          86 VA   87 (244)
T ss_dssp             CC
T ss_pred             cc
Confidence            54

>d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNMT2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.01  E-value=0.044  Score=44.42  Aligned_cols=88  Identities=14%  Similarity=0.151  Sum_probs=57.2

Q ss_pred             CCeEEEEcCcccHhHHHHHhhCC--e-EEEEcCCHHHHHHHhc-CCCceEEeCC--CCchhhhhhccCCCCceeeEEEcc
Q 037961           34 RNLAWDVGTRSGQAAASLAQIYQ--H-VIATDTSPKQLKFAIK-LPNIRYQLTP--TMSITELEQNVATQSSVDLVTIAS  107 (262)
Q Consensus        34 ~~~vlDvGcG~G~~~~~l~~~~~--~-v~~vD~s~~~~~~a~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~D~V~~~~  107 (262)
                      ...|+|+-||.|.++..|...|.  + +.++|+++..++..+. +++..++.+|  .+...+   +  +...+|++++..
T Consensus         2 p~kv~~lF~G~Gg~~~gl~~aG~~~~~~~a~E~~~~a~~~~~~n~~~~~~~~~di~~~~~~~---~--~~~~~Dll~ggp   76 (343)
T d1g55a_           2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFPHTQLLAKTIEGITLEE---F--DRLSFDMILMSP   76 (343)
T ss_dssp             CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTTSCEECSCGGGCCHHH---H--HHHCCSEEEECC
T ss_pred             CCEEEEcCcCccHHHHHHHHcCCCCeEEEEEECCHHHHHHHHHHCCCCCcccCchhhCCHhH---c--CCCCccEEEeec
Confidence            34689999999999988877774  4 5699999999987765 4677777666  222222   2  234689999877


Q ss_pred             ccccC----------Ch-hHHHHHHHHhhc
Q 037961          108 ALHWF----------DL-PQFYKQVKWVLK  126 (262)
Q Consensus       108 ~~~~~----------d~-~~~l~~~~r~Lk  126 (262)
                      .+.-+          |. ..++-++.++++
T Consensus        77 PCq~fS~ag~~~~~~d~r~~l~~~~~~~i~  106 (343)
T d1g55a_          77 PCQPFTRIGRQGDMTDSRTNSFLHILDILP  106 (343)
T ss_dssp             C------------------CHHHHHHHHGG
T ss_pred             ccccccccccccccccccccccchhhhhHh
Confidence            66533          22 225566677653

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=92.01  E-value=0.2  Score=36.94  Aligned_cols=98  Identities=7%  Similarity=0.034  Sum_probs=55.3

Q ss_pred             CCCCeEEEEcC--c-ccHhHHHHHhh-CCeEEEEc----CCHHHHHHHhcCCCceEEeCC---CCch-hhhhhc-cCCCC
Q 037961           32 PKRNLAWDVGT--R-SGQAAASLAQI-YQHVIATD----TSPKQLKFAIKLPNIRYQLTP---TMSI-TELEQN-VATQS   98 (262)
Q Consensus        32 ~~~~~vlDvGc--G-~G~~~~~l~~~-~~~v~~vD----~s~~~~~~a~~~~~~~~~~~~---~~~~-~~~~~~-~~~~~   98 (262)
                      .++..||=+.+  | .|..+.++++. |++|+++-    -+++.++.+++...-.++..+   .... ..+.+. .-..+
T Consensus        27 ~~g~~vli~~ga~g~vG~~aiqlAk~~Ga~vI~~v~~~~~~~~~~~~~~~lGad~vi~~~~~~~~~~~~~v~~~~~~~g~  106 (189)
T d1gu7a2          27 TPGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKELGATQVITEDQNNSREFGPTIKEWIKQSGG  106 (189)
T ss_dssp             CTTTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTTHHHHHHHHHHHTCSEEEEHHHHHCGGGHHHHHHHHHHHTC
T ss_pred             CCCCEEEEEeCCCchHHHHHHHHHhhcCCeEEEEEecccccchHHhhhhhccccEEEeccccchhHHHHHHHHHHhhccC
Confidence            46666676632  3 46777788875 89998873    334445555554322333221   0000 011111 01235


Q ss_pred             ceeeEEEccccccCChhHHHHHHHHhhcCCCeEEEEEe
Q 037961           99 SVDLVTIASALHWFDLPQFYKQVKWVLKKPSGVIAAWT  136 (262)
Q Consensus        99 ~~D~V~~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~  136 (262)
                      .+|+|+-.-.      ...+....+.|+ |||+++.+.
T Consensus       107 ~vdvv~D~vg------~~~~~~~~~~l~-~~G~~v~~G  137 (189)
T d1gu7a2         107 EAKLALNCVG------GKSSTGIARKLN-NNGLMLTYG  137 (189)
T ss_dssp             CEEEEEESSC------HHHHHHHHHTSC-TTCEEEECC
T ss_pred             CceEEEECCC------cchhhhhhhhhc-CCcEEEEEC
Confidence            6899884321      345678899999 999998865

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=91.41  E-value=0.19  Score=34.71  Aligned_cols=89  Identities=12%  Similarity=0.035  Sum_probs=49.5

Q ss_pred             EEEcCcccHhHHHHH----hhCCeEEEEcCCHHHHHHHhcCCCceEEeCCCCchhhhhhccCCCCceeeEEEccccccCC
Q 037961           38 WDVGTRSGQAAASLA----QIYQHVIATDTSPKQLKFAIKLPNIRYQLTPTMSITELEQNVATQSSVDLVTIASALHWFD  113 (262)
Q Consensus        38 lDvGcG~G~~~~~l~----~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~~~~d  113 (262)
                      +=+|+  |.++..++    +.|.+|+.+|.+++.++.++.. ......+|.......+..++.  ..|.|++...=  -+
T Consensus         4 iIiG~--G~~G~~la~~L~~~g~~vvvid~d~~~~~~~~~~-~~~~~~gd~~~~~~l~~a~i~--~a~~vi~~~~~--~~   76 (134)
T d2hmva1           4 AVIGL--GRFGGSIVKELHRMGHEVLAVDINEEKVNAYASY-ATHAVIANATEENELLSLGIR--NFEYVIVAIGA--NI   76 (134)
T ss_dssp             EEECC--SHHHHHHHHHHHHTTCCCEEEESCHHHHHHTTTT-CSEEEECCTTCTTHHHHHTGG--GCSEEEECCCS--CH
T ss_pred             EEECC--CHHHHHHHHHHHHCCCeEEEecCcHHHHHHHHHh-CCcceeeecccchhhhccCCc--cccEEEEEcCc--hH
Confidence            34455  55555444    4689999999999999988764 456666772222234444333  46777654321  01


Q ss_pred             hhHHHHHHHHhhcCCCeEEEE
Q 037961          114 LPQFYKQVKWVLKKPSGVIAA  134 (262)
Q Consensus       114 ~~~~l~~~~r~Lk~pgG~l~i  134 (262)
                      ....+....+-+. |...++.
T Consensus        77 ~~~~~~~~~~~~~-~~~~iia   96 (134)
T d2hmva1          77 QASTLTTLLLKEL-DIPNIWV   96 (134)
T ss_dssp             HHHHHHHHHHHHT-TCSEEEE
T ss_pred             HhHHHHHHHHHHc-CCCcEEe
Confidence            1223333344444 5556554

>d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HhaI
species: Haemophilus haemolyticus [TaxId: 726]

Probab=91.16  E-value=0.38  Score=38.40  Aligned_cols=70  Identities=9%  Similarity=-0.091  Sum_probs=49.3

Q ss_pred             CCCeEEEEcCcccHhHHHHHhhCCeEE-EEcCCHHHHHHHhcC-CCceEEeCCCCchhhhhhccC-CCCceeeEEEcccc
Q 037961           33 KRNLAWDVGTRSGQAAASLAQIYQHVI-ATDTSPKQLKFAIKL-PNIRYQLTPTMSITELEQNVA-TQSSVDLVTIASAL  109 (262)
Q Consensus        33 ~~~~vlDvGcG~G~~~~~l~~~~~~v~-~vD~s~~~~~~a~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~D~V~~~~~~  109 (262)
                      .+.+|||+-||.|.++..|.+.|.+++ ++|+++..++..+.+ ++..  .+|      +.++.. .-..+|+++++..+
T Consensus        10 ~~lrv~~lFsG~Gg~~~gl~~aG~~~v~a~e~d~~a~~~~~~N~~~~~--~~D------i~~~~~~~~~~~Dll~ggpPC   81 (327)
T d2c7pa1          10 TGLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNFGEKP--EGD------ITQVNEKTIPDHDILCAGFPC   81 (327)
T ss_dssp             TTCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHHHHHHHHHSCCC--BSC------GGGSCGGGSCCCSEEEEECCC
T ss_pred             CCCeEEEECccccHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHCCCCC--cCc------hhcCchhhcceeeeeeccccc
Confidence            567899999999999999988887655 799999999877653 4322  233      222211 12358999987665


Q ss_pred             c
Q 037961          110 H  110 (262)
Q Consensus       110 ~  110 (262)
                      .
T Consensus        82 q   82 (327)
T d2c7pa1          82 Q   82 (327)
T ss_dssp             T
T ss_pred             c
Confidence            4

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.84  E-value=0.74  Score=33.63  Aligned_cols=94  Identities=12%  Similarity=0.023  Sum_probs=59.3

Q ss_pred             CCeEEEEcC--cccHhHHHHHhh-CC-eEEEEcCCHHHHHHH-hcCCCceEEeCC-CCchhhhhhccCCCCceeeEEEcc
Q 037961           34 RNLAWDVGT--RSGQAAASLAQI-YQ-HVIATDTSPKQLKFA-IKLPNIRYQLTP-TMSITELEQNVATQSSVDLVTIAS  107 (262)
Q Consensus        34 ~~~vlDvGc--G~G~~~~~l~~~-~~-~v~~vD~s~~~~~~a-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~D~V~~~~  107 (262)
                      +.+||=.|+  |.|..+.++++. |+ .|+++.-+++....+ +....-..+... ...........  +..+|+|+-..
T Consensus        31 ~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l~~~~gad~vi~~~~~~~~~~~~~~~--~~GvDvv~D~v  108 (187)
T d1vj1a2          31 NQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTSELGFDAAVNYKTGNVAEQLREAC--PGGVDVYFDNV  108 (187)
T ss_dssp             CCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHHHHHHSCCSEEEETTSSCHHHHHHHHC--TTCEEEEEESS
T ss_pred             CCEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhhhhhcccceEEeeccchhHHHHHHHHh--ccCceEEEecC
Confidence            367887773  469999999985 66 466777776665544 444333333333 21112233332  35699998543


Q ss_pred             ccccCChhHHHHHHHHhhcCCCeEEEEEe
Q 037961          108 ALHWFDLPQFYKQVKWVLKKPSGVIAAWT  136 (262)
Q Consensus       108 ~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~  136 (262)
                      .      ...++...+.|+ +||+++.+.
T Consensus       109 G------g~~~~~~~~~l~-~~G~iv~~G  130 (187)
T d1vj1a2         109 G------GDISNTVISQMN-ENSHIILCG  130 (187)
T ss_dssp             C------HHHHHHHHTTEE-EEEEEEEC-
T ss_pred             C------chhHHHHhhhcc-ccccEEEec
Confidence            3      357889999999 999999865

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.20  E-value=1.3  Score=33.82  Aligned_cols=77  Identities=19%  Similarity=0.139  Sum_probs=53.1

Q ss_pred             CCCeEEEEcCcccH---hHHHHHhhCCeEEEEcCCHHHHHHHh-cCCCceEEeCCCCchhhhhhccCCCCceeeEEEccc
Q 037961           33 KRNLAWDVGTRSGQ---AAASLAQIYQHVIATDTSPKQLKFAI-KLPNIRYQLTPTMSITELEQNVATQSSVDLVTIASA  108 (262)
Q Consensus        33 ~~~~vlDvGcG~G~---~~~~l~~~~~~v~~vD~s~~~~~~a~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~  108 (262)
                      +++++|=-|++.|.   .+..|++.|++|+.+|.+++-++... +.+++..+..|.-+....+..--.-++.|+++.+-+
T Consensus         4 ~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~g~iDilVnnAg   83 (242)
T d1cyda_           4 SGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAKECPGIEPVCVDLGDWDATEKALGGIGPVDLLVNNAA   83 (242)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHSTTCEEEECCTTCHHHHHHHHTTCCCCSEEEECCC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHHHHcCCCeEEEECCc
Confidence            45778888887763   45667778999999999988876554 567888888872222333333323478999997654


Q ss_pred             c
Q 037961          109 L  109 (262)
Q Consensus       109 ~  109 (262)
                      .
T Consensus        84 ~   84 (242)
T d1cyda_          84 L   84 (242)
T ss_dssp             C
T ss_pred             c
Confidence            4

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.90  E-value=0.48  Score=36.40  Aligned_cols=78  Identities=19%  Similarity=0.201  Sum_probs=51.9

Q ss_pred             CCCeEEEEcCcccH---hHHHHHhhCCeEEEEcCCHHHHHHHhcCCCceEEeCCCCchhhhhhccCCCCceeeEEEcccc
Q 037961           33 KRNLAWDVGTRSGQ---AAASLAQIYQHVIATDTSPKQLKFAIKLPNIRYQLTPTMSITELEQNVATQSSVDLVTIASAL  109 (262)
Q Consensus        33 ~~~~vlDvGcG~G~---~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~  109 (262)
                      +++++|=-|++.|.   .++.|++.|++|+.+|.+++-++...+..++.....|.......+...-.-+..|.++.+.+.
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~G~~Vi~~~r~~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~id~lVn~ag~   84 (245)
T d2ag5a1           5 DGKVIILTAAAQGIGQAAALAFAREGAKVIATDINESKLQELEKYPGIQTRVLDVTKKKQIDQFANEVERLDVLFNVAGF   84 (245)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHGGGGGSTTEEEEECCTTCHHHHHHHHHHCSCCSEEEECCCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhccCCceeeeeccccccccccccccccceeEEecccc
Confidence            45677878877663   466677789999999999998887777777777777621112222222223568988876554


Q ss_pred             c
Q 037961          110 H  110 (262)
Q Consensus       110 ~  110 (262)
                      .
T Consensus        85 ~   85 (245)
T d2ag5a1          85 V   85 (245)
T ss_dssp             C
T ss_pred             c
Confidence            4

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=89.58  E-value=0.1  Score=40.78  Aligned_cols=42  Identities=21%  Similarity=0.353  Sum_probs=32.5

Q ss_pred             CCCCceeeEEEccccc-----------cC-ChhHHHHHHHHhhcCCCeEEEEEec
Q 037961           95 ATQSSVDLVTIASALH-----------WF-DLPQFYKQVKWVLKKPSGVIAAWTY  137 (262)
Q Consensus        95 ~~~~~~D~V~~~~~~~-----------~~-d~~~~l~~~~r~Lk~pgG~l~i~~~  137 (262)
                      ++++++|+|+......           |. .....+.++.|+|| |||.++++..
T Consensus        19 l~d~SIDliitDPPYn~~~~~~~~~~~y~~~~~~~~~e~~rvLk-~~G~~~~~~~   72 (279)
T d1eg2a_          19 LPDDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLS-PTGSIAIFGG   72 (279)
T ss_dssp             SCTTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEE-EEEEEEEEEC
T ss_pred             CcCCCccEEEECCCCCCCcccccCHHHHHHHHHHHHHHHHHHhC-CCccEEEecC
Confidence            5789999999976642           22 23557889999999 9999998653

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=89.57  E-value=0.17  Score=32.79  Aligned_cols=60  Identities=13%  Similarity=0.009  Sum_probs=38.8

Q ss_pred             HhHHHHHhhCCeEEEEcCCH-HHHHHHhcCCCceEEeCCCCchhhhhhccCCCCceeeEEEccccccCChh
Q 037961           46 QAAASLAQIYQHVIATDTSP-KQLKFAIKLPNIRYQLTPTMSITELEQNVATQSSVDLVTIASALHWFDLP  115 (262)
Q Consensus        46 ~~~~~l~~~~~~v~~vD~s~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~~~~d~~  115 (262)
                      .+++.|.+.|.+|+|.|..+ ++.+..++ .++.+..+.     +.+.+    ...|+|+.+.++..-+++
T Consensus        16 ~LA~~L~~~G~~VsGSD~~~~~~t~~L~~-~Gi~i~~gh-----~~~~i----~~~d~vV~SsAI~~~npe   76 (89)
T d1j6ua1          16 AVALHEFSNGNDVYGSNIEETERTAYLRK-LGIPIFVPH-----SADNW----YDPDLVIKTPAVRDDNPE   76 (89)
T ss_dssp             HHHHHHHHTTCEEEEECSSCCHHHHHHHH-TTCCEESSC-----CTTSC----CCCSEEEECTTCCTTCHH
T ss_pred             HHHHHHHhCCCeEEEEeCCCChhHHHHHH-CCCeEEeee-----ccccc----CCCCEEEEecCcCCCCHH
Confidence            45566777899999999987 44444443 356666543     12222    247999999888654444

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=89.45  E-value=0.3  Score=31.96  Aligned_cols=73  Identities=12%  Similarity=0.062  Sum_probs=45.9

Q ss_pred             CCCeEEEEcC-ccc--HhHHHHHhhCCeEEEEcCC-HHHHHHHhcCCCceEEeCCCCchhhhhhccCCCCceeeEEEccc
Q 037961           33 KRNLAWDVGT-RSG--QAAASLAQIYQHVIATDTS-PKQLKFAIKLPNIRYQLTPTMSITELEQNVATQSSVDLVTIASA  108 (262)
Q Consensus        33 ~~~~vlDvGc-G~G--~~~~~l~~~~~~v~~vD~s-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~  108 (262)
                      ...++.=+|. |+|  .+++.|.+.|.+|+|.|.. ....+...+ .++.+..+.     +.+.+    ...|+|+.+.+
T Consensus         7 ~~~~ihfiGigG~GMs~LA~~L~~~G~~VsGSD~~~~~~~~~L~~-~Gi~v~~g~-----~~~~i----~~~d~vV~S~A   76 (96)
T d1p3da1           7 RVQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIADGVVTQRLAQ-AGAKIYIGH-----AEEHI----EGASVVVVSSA   76 (96)
T ss_dssp             TCCEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCCSHHHHHHHH-TTCEEEESC-----CGGGG----TTCSEEEECTT
T ss_pred             hCCEEEEEEECHHHHHHHHHHHHhCCCEEEEEeCCCChhhhHHHH-CCCeEEECC-----ccccC----CCCCEEEECCC
Confidence            3455666664 455  4566777889999999986 334444444 367776654     11222    24799999988


Q ss_pred             cccCChh
Q 037961          109 LHWFDLP  115 (262)
Q Consensus       109 ~~~~d~~  115 (262)
                      +-.-+++
T Consensus        77 I~~~npe   83 (96)
T d1p3da1          77 IKDDNPE   83 (96)
T ss_dssp             SCTTCHH
T ss_pred             cCCCCHH
Confidence            7654444

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=88.66  E-value=0.51  Score=34.01  Aligned_cols=94  Identities=17%  Similarity=0.152  Sum_probs=56.3

Q ss_pred             CeEEEEcCccc--HhHHHHHhhCCeEEEEcCCHHHHHHHhcC-------CCceEEeCCCCchhhhhhccCCCCceeeEEE
Q 037961           35 NLAWDVGTRSG--QAAASLAQIYQHVIATDTSPKQLKFAIKL-------PNIRYQLTPTMSITELEQNVATQSSVDLVTI  105 (262)
Q Consensus        35 ~~vlDvGcG~G--~~~~~l~~~~~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~  105 (262)
                      +++-=+|+|..  .++..|++.|.+|+..|.++.-++..++.       +.............+.++.   -...|+|+.
T Consensus         2 k~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~---~~~aD~iii   78 (184)
T d1bg6a2           2 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLA---VKDADVILI   78 (184)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHH---HTTCSEEEE
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhH---hcCCCEEEE
Confidence            34667888863  34556677899999999999988877642       1111111110000111111   135799986


Q ss_pred             ccccccCChhHHHHHHHHhhcCCCeEEEE
Q 037961          106 ASALHWFDLPQFYKQVKWVLKKPSGVIAA  134 (262)
Q Consensus       106 ~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i  134 (262)
                      ..  .....+.+++++...|+ ++-.+++
T Consensus        79 ~v--~~~~~~~~~~~i~~~l~-~~~~iv~  104 (184)
T d1bg6a2          79 VV--PAIHHASIAANIASYIS-EGQLIIL  104 (184)
T ss_dssp             CS--CGGGHHHHHHHHGGGCC-TTCEEEE
T ss_pred             EE--chhHHHHHHHHhhhccC-CCCEEEE
Confidence            43  22356778999999999 7775543

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

Probab=87.77  E-value=0.16  Score=39.04  Aligned_cols=42  Identities=17%  Similarity=0.212  Sum_probs=31.2

Q ss_pred             CCCCceeeEEEccccc--------------cC-ChhHHHHHHHHhhcCCCeEEEEEec
Q 037961           95 ATQSSVDLVTIASALH--------------WF-DLPQFYKQVKWVLKKPSGVIAAWTY  137 (262)
Q Consensus        95 ~~~~~~D~V~~~~~~~--------------~~-d~~~~l~~~~r~Lk~pgG~l~i~~~  137 (262)
                      ++++++|+|+......              |+ .....++++.|+|+ |||.++++..
T Consensus        19 lpd~sVdliitdPPY~~~~~~~d~~~~~~~y~~~~~~~~~e~~rvLk-~~g~~~~~~~   75 (256)
T d1g60a_          19 VENKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLD-KDGSLYIFNT   75 (256)
T ss_dssp             SCTTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEE-EEEEEEEEEC
T ss_pred             CcCCCcCEEEECCCCCCCcCcCcCCCCHHHHHHHHHHHHHHhhhccc-cCcccccccC
Confidence            4789999999976642              11 13347889999999 9999887553

>d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RPA4359-like
domain: Hypothetical protein RPA4359
species: Rhodopseudomonas palustris [TaxId: 1076]

Probab=87.51  E-value=0.66  Score=37.95  Aligned_cols=40  Identities=13%  Similarity=0.071  Sum_probs=31.1

Q ss_pred             CCCeEEEEcCcccHhHHHHHhh---------CCeEEEEcCCHHHHHHHh
Q 037961           33 KRNLAWDVGTRSGQAAASLAQI---------YQHVIATDTSPKQLKFAI   72 (262)
Q Consensus        33 ~~~~vlDvGcG~G~~~~~l~~~---------~~~v~~vD~s~~~~~~a~   72 (262)
                      +.-.|+|+|+|+|.++..+...         ..+++.+|+|+.+.+.-+
T Consensus        79 ~~~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~s~~L~~~Q~  127 (365)
T d1zkda1          79 QTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQ  127 (365)
T ss_dssp             SSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHH
T ss_pred             ccceEEecCCcccHHHHhhhhhhcccccccccceEEEeccchhHHHHHH
Confidence            4457999999999999887652         235889999999776544

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=86.14  E-value=1.6  Score=33.29  Aligned_cols=77  Identities=16%  Similarity=0.121  Sum_probs=52.4

Q ss_pred             CCCeEEEEcCcccH---hHHHHHhhCCeEEEEcCCHHHHHHHhcCCCceEEeCCCCchhhhhhc----cCCCCceeeEEE
Q 037961           33 KRNLAWDVGTRSGQ---AAASLAQIYQHVIATDTSPKQLKFAIKLPNIRYQLTPTMSITELEQN----VATQSSVDLVTI  105 (262)
Q Consensus        33 ~~~~vlDvGcG~G~---~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~D~V~~  105 (262)
                      +++++|=-|++.|.   .+..|++.|++|+.+|.+++-++.+.+..+..++..|.-+..+.+.+    .-.-+..|+++.
T Consensus         4 ~gK~~lITGas~GIG~aia~~l~~~G~~V~~~~r~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iDilVn   83 (242)
T d1ulsa_           4 KDKAVLITGAAHGIGRATLELFAKEGARLVACDIEEGPLREAAEAVGAHPVVMDVADPASVERGFAEALAHLGRLDGVVH   83 (242)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTTCEEEECCTTCHHHHHHHHHHHHHHHSSCCEEEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcCCeEEEEecCCHHHHHHHHHHHHHhcCCceEEEE
Confidence            45678888888763   45567778999999999999998877666777888772222223221    112357998887


Q ss_pred             cccc
Q 037961          106 ASAL  109 (262)
Q Consensus       106 ~~~~  109 (262)
                      +-+.
T Consensus        84 nAG~   87 (242)
T d1ulsa_          84 YAGI   87 (242)
T ss_dssp             CCCC
T ss_pred             CCcc
Confidence            6544

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=85.51  E-value=2.7  Score=32.05  Aligned_cols=104  Identities=13%  Similarity=0.026  Sum_probs=63.7

Q ss_pred             CCCeEEEEcCccc---HhHHHHHhhCCeEEEEcCCHHHHHHHhc--CCCceEEeCCCCchhhhhhc----cCCCCceeeE
Q 037961           33 KRNLAWDVGTRSG---QAAASLAQIYQHVIATDTSPKQLKFAIK--LPNIRYQLTPTMSITELEQN----VATQSSVDLV  103 (262)
Q Consensus        33 ~~~~vlDvGcG~G---~~~~~l~~~~~~v~~vD~s~~~~~~a~~--~~~~~~~~~~~~~~~~~~~~----~~~~~~~D~V  103 (262)
                      +++++|=-|++.|   ..+..|++.|++|+.+|.+++.++...+  ..+..++..|.-+..+.+.+    .-.-+..|++
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~iDil   84 (253)
T d1hxha_           5 QGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQLAAELGERSMFVRHDVSSEADWTLVMAAVQRRLGTLNVL   84 (253)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCTTEEEECCCTTCHHHHHHHHHHHHHHHCSCCEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCCCeEEEEeecCCHHHHHHHHHHHHHHhCCCCeE
Confidence            4567787887776   3566677789999999999988876553  24455566662222222221    1123678999


Q ss_pred             EEccccccC------ChhH--------------HHHHHHHhhcCCCeEEEEEe
Q 037961          104 TIASALHWF------DLPQ--------------FYKQVKWVLKKPSGVIAAWT  136 (262)
Q Consensus       104 ~~~~~~~~~------d~~~--------------~l~~~~r~Lk~pgG~l~i~~  136 (262)
                      +.+-.....      +.+.              ..+.+...|++.+|.++...
T Consensus        85 VnnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~G~Iv~is  137 (253)
T d1hxha_          85 VNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKETGGSIINMA  137 (253)
T ss_dssp             EECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTCEEEEEEC
T ss_pred             EecccccCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCceeccc
Confidence            977655322      1111              35567777764688877633

>d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: FkbM-like
domain: Methyltransferase FkbM
species: Methylobacillus flagellatus [TaxId: 405]

Probab=84.13  E-value=0.87  Score=37.72  Aligned_cols=42  Identities=17%  Similarity=0.256  Sum_probs=35.1

Q ss_pred             CCCCeEEEEcCcccHhHHHHHhh----CCeEEEEcCCHHHHHHHhc
Q 037961           32 PKRNLAWDVGTRSGQAAASLAQI----YQHVIATDTSPKQLKFAIK   73 (262)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~----~~~v~~vD~s~~~~~~a~~   73 (262)
                      .++.+++|||+-.|..+..++..    +.+|+++||++...+..++
T Consensus       211 ~kn~vfIDVGAniG~~s~~f~~~~~~~~~kV~aFEP~p~n~~~Lkk  256 (395)
T d2py6a1         211 SDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQN  256 (395)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHH
T ss_pred             CCCCEEEECCcCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHH
Confidence            46679999999999998877653    4689999999999988764

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.98  E-value=2.1  Score=32.65  Aligned_cols=80  Identities=10%  Similarity=0.106  Sum_probs=54.1

Q ss_pred             CCCeEEEEcCcccH---hHHHHHhhCCeEEEEcCCHHHHHHHhc-----CCCceEEeCCCCchhhhhh----ccCCCCce
Q 037961           33 KRNLAWDVGTRSGQ---AAASLAQIYQHVIATDTSPKQLKFAIK-----LPNIRYQLTPTMSITELEQ----NVATQSSV  100 (262)
Q Consensus        33 ~~~~vlDvGcG~G~---~~~~l~~~~~~v~~vD~s~~~~~~a~~-----~~~~~~~~~~~~~~~~~~~----~~~~~~~~  100 (262)
                      .++++|=-|++.|.   .+..+++.|++|+.+|.+++-++...+     ..++.....|.-+.++.+.    .--..+..
T Consensus         6 ~Gkv~lITGas~GIG~~ia~~la~~G~~V~l~~r~~~~l~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~i~~~~g~i   85 (244)
T d1yb1a_           6 TGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGLGAKVHTFVVDCSNREDIYSSAKKVKAEIGDV   85 (244)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTCCC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHHcCCC
Confidence            46788888999874   667788889999999999988875543     2567777777211222222    11135679


Q ss_pred             eeEEEccccccC
Q 037961          101 DLVTIASALHWF  112 (262)
Q Consensus       101 D~V~~~~~~~~~  112 (262)
                      |+++.+.+..+.
T Consensus        86 dilinnag~~~~   97 (244)
T d1yb1a_          86 SILVNNAGVVYT   97 (244)
T ss_dssp             SEEEECCCCCCC
T ss_pred             ceeEeecccccc
Confidence            999987666543

>d2uyoa1 c.66.1.57 (A:14-310) Putative methyltransferase ML2640 {Mycobacterium leprae [TaxId: 1769]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: ML2640-like
domain: Putative methyltransferase ML2640
species: Mycobacterium leprae [TaxId: 1769]

Probab=83.35  E-value=4.5  Score=31.72  Aligned_cols=99  Identities=13%  Similarity=0.037  Sum_probs=58.2

Q ss_pred             CeEEEEcCcccHhHHHHH-hhCCeEEEEcCCHHHHHHHhc-------C--CCceEEeCC-CCch-hhhhhccCCCCceee
Q 037961           35 NLAWDVGTRSGQAAASLA-QIYQHVIATDTSPKQLKFAIK-------L--PNIRYQLTP-TMSI-TELEQNVATQSSVDL  102 (262)
Q Consensus        35 ~~vlDvGcG~G~~~~~l~-~~~~~v~~vD~s~~~~~~a~~-------~--~~~~~~~~~-~~~~-~~~~~~~~~~~~~D~  102 (262)
                      ..|+.+|||-=.-...+. ..+.+++=+|. |++++.-++       .  .+...+..| ..+. ..+...++....--+
T Consensus        91 ~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~-p~vi~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~L~~~g~d~~~ptl  169 (297)
T d2uyoa1          91 RQFVILASGLDSRAYRLDWPTGTTVYEIDQ-PKVLAYKSTTLAEHGVTPTADRREVPIDLRQDWPPALRSAGFDPSARTA  169 (297)
T ss_dssp             CEEEEETCTTCCHHHHSCCCTTCEEEEEEC-HHHHHHHHHHHHHTTCCCSSEEEEEECCTTSCHHHHHHHTTCCTTSCEE
T ss_pred             CeEEEeCcccCChhhhcCCCcCceEEEcCC-hHHHHHHHHHHHhcCCCCCceEEEecccccchHHHHHHhcCCCCCCCEE
Confidence            345669999876665553 23556777775 566653222       1  223344444 2111 122233344455566


Q ss_pred             EEEccccccCChhH---HHHHHHHhhcCCCeEEEEE
Q 037961          103 VTIASALHWFDLPQ---FYKQVKWVLKKPSGVIAAW  135 (262)
Q Consensus       103 V~~~~~~~~~d~~~---~l~~~~r~Lk~pgG~l~i~  135 (262)
                      +++-..+++++.+.   +++.+.+... ||+.|++-
T Consensus       170 ~i~EGvl~YL~~~~~~~ll~~i~~~~~-~GS~l~~d  204 (297)
T d2uyoa1         170 WLAEGLLMYLPATAQDGLFTEIGGLSA-VGSRIAVE  204 (297)
T ss_dssp             EEECSCGGGSCHHHHHHHHHHHHHTCC-TTCEEEEE
T ss_pred             EEEccccccCCHHHHHHHHHHHHHhCC-CCCEEEEE
Confidence            77777788886554   7888888888 89998873

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.09  E-value=0.96  Score=33.29  Aligned_cols=39  Identities=21%  Similarity=0.118  Sum_probs=30.7

Q ss_pred             CeEEEEcCcc-c-HhHHHHHhhCCeEEEEcCCHHHHHHHhc
Q 037961           35 NLAWDVGTRS-G-QAAASLAQIYQHVIATDTSPKQLKFAIK   73 (262)
Q Consensus        35 ~~vlDvGcG~-G-~~~~~l~~~~~~v~~vD~s~~~~~~a~~   73 (262)
                      ++|-=||+|+ | ..+..++..|.+|+..|++++.++.+++
T Consensus         5 kkvaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l~~a~~   45 (192)
T d1f0ya2           5 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKK   45 (192)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHH
T ss_pred             EEEEEECcCHHHHHHHHHHHhCCCcEEEEECChHHHHHHHh
Confidence            4577899987 2 3455667789999999999999987764

>d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.PvuII N4 cytosine-specific DNA methyltransferase
species: Proteus vulgaris [TaxId: 585]

Probab=81.91  E-value=0.41  Score=37.75  Aligned_cols=42  Identities=24%  Similarity=0.238  Sum_probs=31.9

Q ss_pred             CCCCceeeEEEccccc--------------cC-ChhHHHHHHHHhhcCCCeEEEEEec
Q 037961           95 ATQSSVDLVTIASALH--------------WF-DLPQFYKQVKWVLKKPSGVIAAWTY  137 (262)
Q Consensus        95 ~~~~~~D~V~~~~~~~--------------~~-d~~~~l~~~~r~Lk~pgG~l~i~~~  137 (262)
                      ++++++|+|+......              |+ .....+++++|+|+ |+|.+++...
T Consensus        27 l~~~sVdli~tDPPY~~~~~~~~~~~~~~~y~~~~~~~l~~~~rvLk-~~G~i~i~~~   83 (320)
T d1booa_          27 FPEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLK-PDGSFVVDFG   83 (320)
T ss_dssp             SCSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEE-EEEEEEEEEC
T ss_pred             CccCCCCEEEECCCCcCCCCCCCCCCCHHHHHHHHHHHHHHHHHhCc-ccCccccccc
Confidence            4789999999876542              12 14557999999999 9999998543

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=80.30  E-value=3.6  Score=27.56  Aligned_cols=87  Identities=9%  Similarity=-0.010  Sum_probs=57.5

Q ss_pred             CcccHhHHHHHhh--CCeEEEEcCCHHHHHHHhcCCCceEEeCCCCchhhhhhccCCCCceeeEEEccccccCChhH--H
Q 037961           42 TRSGQAAASLAQI--YQHVIATDTSPKQLKFAIKLPNIRYQLTPTMSITELEQNVATQSSVDLVTIASALHWFDLPQ--F  117 (262)
Q Consensus        42 cG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~~~~d~~~--~  117 (262)
                      ||.|..+..+++.  +..++.+|.++..++..+.. ++.++.+|..+...++...+.  ..+.+++...    |...  .
T Consensus         6 ~G~g~~g~~l~~~L~~~~i~vi~~d~~~~~~~~~~-~~~~i~Gd~~~~~~L~~a~i~--~A~~vi~~~~----~d~~n~~   78 (129)
T d2fy8a1           6 CGWSESTLECLRELRGSEVFVLAEDENVRKKVLRS-GANFVHGDPTRVSDLEKANVR--GARAVIVNLE----SDSETIH   78 (129)
T ss_dssp             ESCCHHHHHHHHTSCGGGEEEEESCTTHHHHHHHT-TCEEEESCTTSHHHHHHTTCT--TCSEEEECCS----SHHHHHH
T ss_pred             ECCCHHHHHHHHHHcCCCCEEEEcchHHHHHHHhc-CccccccccCCHHHHHHhhhh--cCcEEEEecc----chhhhHH
Confidence            5667788888774  56899999999998887654 788888883333444554443  4677775321    2222  4


Q ss_pred             HHHHHHhhcCCCeEEEEEe
Q 037961          118 YKQVKWVLKKPSGVIAAWT  136 (262)
Q Consensus       118 l~~~~r~Lk~pgG~l~i~~  136 (262)
                      +....|-+. |...++.-.
T Consensus        79 ~~~~~r~~~-~~~~iia~~   96 (129)
T d2fy8a1          79 CILGIRKID-ESVRIIAEA   96 (129)
T ss_dssp             HHHHHHHHC-SSSCEEEEC
T ss_pred             HHHHHHHHC-CCceEEEEE
Confidence            556677788 887766633