Citrus Sinensis ID: 037967

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60------
Protein Sequence
MAVGKDDVEIIKPRTDKRQYRRLVLKNSLQVLLISDPDADKCAASMNVSVGAFCDPVGLEGLAHFL
Secondary Structure (PSIPRED)
ccccccccEEEcccccccccEEEEEccccEEEEEEccccccccEEEEEcccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccEEcccEEEccccccccEEEEEEccccEEEEEEcccccHHHHEEEEEcccccccccccccHHcc
Coil and Loop (DISEMBL)
mavgkddveiikprtdkrqYRRLVLKNSLQVLlisdpdadkcaasmnvsvgafcdpvgleglahfl
Flexible Loop (DISEMBL)
mavgkddveiikprtdkrqyrrLVLKNSLQVLLISDPDADKCAASMNVSVGAFCDPVGLEGLAHFL
Low Complexity Region (SEG)
MAVGKDDVEIIKPRTDKRQYRRLVLKNSLQVLLISDPDADKCAASMNVSVGAFCDPVGLEGLAHFL
Disordered region (IsUnstruct)
******************QYRRLVLKNSLQVLLISDPDADKCAASMNVSVGAFCDPVGLEGLA***
Disordered Region (DISOPRED)
**********IKPRTDKRQYRRLVLKNSLQVLLISDPDADKCAASMNVSVGAFCDPVGLEGLAHFL
Disordered Region (DISEMBL)
MAVGKDDVEIIKPRTDKRQYRRLVLKNSLQVLLISDPDADKCAASMNVSVGAFCDPVGLEGLAHFL
Disordered Region (DISPRO)
*AVGKDDVEIIKPRTDKRQYRRLVLKNSLQVLLISDPDADKCAASMNVSVGAFCDPVGLEGL**FL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhoo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAVGKDDVEIIKPRTDKRQYRRLVLKNSLQVLLISDPDADKCAASMNVSVGAFCDPVGLEGLAHFL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	66	2.2.26 [Sep-21-2011]
O22941	970	Zinc-metallopeptidase, pe	no	no	1.0	0.068	0.732	5e-23
Q06010	1027	A-factor-processing enzym	yes	no	0.893	0.057	0.542	1e-12
Q9JHR7	1019	Insulin-degrading enzyme	yes	no	0.969	0.062	0.453	4e-11
Q24K02	1019	Insulin-degrading enzyme	yes	no	0.848	0.054	0.5	6e-11
P35559	1019	Insulin-degrading enzyme	yes	no	0.969	0.062	0.453	7e-11
P14735	1019	Insulin-degrading enzyme	yes	no	0.848	0.054	0.5	3e-10
P22817	990	Insulin-degrading enzyme	yes	no	0.848	0.056	0.553	6e-10
Q54JQ2	962	Insulin-degrading enzyme	yes	no	0.939	0.064	0.387	1e-09
O14077	969	Putative zinc protease mu	yes	no	0.939	0.063	0.432	5e-09
Q8CVS2	962	Protease 3 OS=Escherichia	yes	no	0.863	0.059	0.456	5e-07

>sp|O22941|PXM16_ARATH Zinc-metallopeptidase, peroxisomal OS=Arabidopsis thaliana GN=PXM16 PE=2 SV=1

 Score =  106 bits (264), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 52/71 (73%), Positives = 58/71 (81%), Gaps = 5/71 (7%)

Query: 1  MAVGKDD-----VEIIKPRTDKRQYRRLVLKNSLQVLLISDPDADKCAASMNVSVGAFCD 55
          MAV K +     VEI+KPRTD R+YR +VLKN LQVLLISDPD DKCAASM+VSVG+F D
Sbjct: 1  MAVEKSNTTVGGVEILKPRTDNREYRMIVLKNLLQVLLISDPDTDKCAASMSVSVGSFSD 60

Query: 56 PVGLEGLAHFL 66
          P GLEGLAHFL
Sbjct: 61 PQGLEGLAHFL 71

Peptidase that might be involved in pathogen or wound response. Not required for peroxisome biogenesis, indole-3-butyric acid (IBA) metabolism, fatty acid beta-oxidation or degradation of glyoxylate cycle enzymes during seedling development.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 4EC: .EC: 2EC: 4EC: .EC: -

>sp|Q06010|STE23_YEAST A-factor-processing enzyme OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=STE23 PE=1 SV=2

 Score = 71.6 bits (174), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 32/59 (54%), Positives = 43/59 (72%)

Query: 7   DVEIIKPRTDKRQYRRLVLKNSLQVLLISDPDADKCAASMNVSVGAFCDPVGLEGLAHF 65
           +++ +KP  D+R YR + L N L+ LLI DP ADK AAS++V++GAF DP  L GLAHF
Sbjct: 61  NLDFLKPDLDERSYRFIELPNKLKALLIQDPKADKAAASLDVNIGAFEDPKNLPGLAHF 119

Involved in the N-terminal endoproteolytic cleavage of the P2 precursor of the a-factor mating pheromone. Capable of proteolysing the established mammalian insulin-degrading enzymes (IDEs) substrates amyloid-beta peptide and insulin B-chain.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 4

EC: .

EC: -

>sp|Q9JHR7|IDE_MOUSE Insulin-degrading enzyme OS=Mus musculus GN=Ide PE=1 SV=1

 Score = 66.6 bits (161), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 29/64 (45%), Positives = 45/64 (70%)

Query: 2   AVGKDDVEIIKPRTDKRQYRRLVLKNSLQVLLISDPDADKCAASMNVSVGAFCDPVGLEG 61
           A+ + + +I+K   DKR+YR L L N ++VLLISDP  DK +A+++V +G+  DP  + G
Sbjct: 46  AIQRIEDQIVKSPEDKREYRGLELANGIKVLLISDPTTDKSSAALDVHIGSLSDPPNIPG 105

Query: 62  LAHF 65
           L+HF
Sbjct: 106 LSHF 109

Plays a role in the cellular breakdown of insulin, IAPP, glucagon, bradykinin, kallidin and other peptides, and thereby plays a role in intercellular peptide signaling. Degrades amyloid formed by APP and IAPP.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 4

EC: .

EC: 5

EC: 6

>sp|Q24K02|IDE_BOVIN Insulin-degrading enzyme OS=Bos taurus GN=IDE PE=2 SV=1

 Score = 65.9 bits (159), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 28/56 (50%), Positives = 40/56 (71%)

Query: 10  IIKPRTDKRQYRRLVLKNSLQVLLISDPDADKCAASMNVSVGAFCDPVGLEGLAHF 65
           IIK   DKR+YR L L N ++VLL+SDP  DK +A+++V +G+  DP  + GL+HF
Sbjct: 54  IIKSHEDKREYRGLELANGIKVLLVSDPTTDKSSAALDVHIGSLSDPPNIAGLSHF 109

Plays a role in the cellular breakdown of insulin, IAPP, glucagon, bradykinin, kallidin and other peptides, and thereby plays a role in intercellular peptide signaling. Degrades amyloid formed by APP and IAPP.

Bos taurus (taxid: 9913)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 4

EC: .

EC: 5

EC: 6

>sp|P35559|IDE_RAT Insulin-degrading enzyme OS=Rattus norvegicus GN=Ide PE=1 SV=1

 Score = 65.9 bits (159), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 29/64 (45%), Positives = 44/64 (68%)

Query: 2   AVGKDDVEIIKPRTDKRQYRRLVLKNSLQVLLISDPDADKCAASMNVSVGAFCDPVGLEG 61
           A+ + +  I+K   DKR+YR L L N ++VLLISDP  DK +A+++V +G+  DP  + G
Sbjct: 46  AIQRIEDHIVKSPEDKREYRGLELANGIKVLLISDPTTDKSSAALDVHIGSLSDPPNIPG 105

Query: 62  LAHF 65
           L+HF
Sbjct: 106 LSHF 109

Plays a role in the cellular breakdown of insulin, IAPP, glucagon, bradykinin, kallidin and other peptides, and thereby plays a role in intercellular peptide signaling. Degrades amyloid formed by APP and IAPP.

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 4

EC: .

EC: 5

EC: 6

>sp|P14735|IDE_HUMAN Insulin-degrading enzyme OS=Homo sapiens GN=IDE PE=1 SV=4

 Score = 63.9 bits (154), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 28/56 (50%), Positives = 39/56 (69%)

Query: 10  IIKPRTDKRQYRRLVLKNSLQVLLISDPDADKCAASMNVSVGAFCDPVGLEGLAHF 65
           I K   DKR+YR L L N ++VLLISDP  DK +A+++V +G+  DP  + GL+HF
Sbjct: 54  ITKSPEDKREYRGLELANGIKVLLISDPTTDKSSAALDVHIGSLSDPPNIAGLSHF 109

Plays a role in the cellular breakdown of insulin, IAPP, glucagon, bradykinin, kallidin and other peptides, and thereby plays a role in intercellular peptide signaling. Degrades amyloid formed by APP and IAPP. May play a role in the degradation and clearance of naturally secreted amyloid beta-protein by neurons and microglia.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 4

EC: .

EC: 5

EC: 6

>sp|P22817|IDE_DROME Insulin-degrading enzyme OS=Drosophila melanogaster GN=Ide PE=1 SV=4

 Score = 62.8 bits (151), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 31/56 (55%), Positives = 37/56 (66%)

Query: 10 IIKPRTDKRQYRRLVLKNSLQVLLISDPDADKCAASMNVSVGAFCDPVGLEGLAHF 65
          I K   D R YR L L+N L+VLLISDP+ D  AA+++V VG   DP  L GLAHF
Sbjct: 27 IEKSLQDTRDYRGLQLENGLKVLLISDPNTDVSAAALSVQVGHMSDPTNLPGLAHF 82

Can cleave insulin and TGF-alpha.

Drosophila melanogaster (taxid: 7227)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 4

EC: .

EC: 5

EC: 6

>sp|Q54JQ2|IDE_DICDI Insulin-degrading enzyme homolog OS=Dictyostelium discoideum GN=DDB_G0287851 PE=3 SV=1

 Score = 61.6 bits (148), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 24/62 (38%), Positives = 44/62 (70%)

Query: 5  KDDVEIIKPRTDKRQYRRLVLKNSLQVLLISDPDADKCAASMNVSVGAFCDPVGLEGLAH 64
          + +V++I+   D  +YR + LKN L+V+L+SD   D+ +  +++++G+ C+P  +EGLAH
Sbjct: 15 RKEVKLIQSPNDNNKYRYVKLKNGLEVVLVSDETTDQSSCCLSINIGSLCNPREIEGLAH 74

Query: 65 FL 66
          FL
Sbjct: 75 FL 76

Dictyostelium discoideum (taxid: 44689)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 4

EC: .

EC: -

>sp|O14077|MU138_SCHPO Putative zinc protease mug138 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mug138 PE=1 SV=1

 Score = 59.7 bits (143), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 29/67 (43%), Positives = 43/67 (64%), Gaps = 5/67 (7%)

Query: 4  GKDDVEIIK-----PRTDKRQYRRLVLKNSLQVLLISDPDADKCAASMNVSVGAFCDPVG 58
          GK  VE+I      P  D R+YR + L+N L+VLL+ DP+ D  +A+++V +G+  +P  
Sbjct: 3  GKPQVEVIVNGQVVPNLDDREYRLIKLENDLEVLLVRDPETDNASAAIDVHIGSQSNPRE 62

Query: 59 LEGLAHF 65
          L GLAHF
Sbjct: 63 LLGLAHF 69

Has a role in meiosis.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 4

EC: .

EC: -

>sp|Q8CVS2|PTRA_ECOL6 Protease 3 OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=ptrA PE=3 SV=1

 Score = 53.1 bits (126), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 26/57 (45%), Positives = 36/57 (63%)

Query: 10 IIKPRTDKRQYRRLVLKNSLQVLLISDPDADKCAASMNVSVGAFCDPVGLEGLAHFL 66
          I K   D RQY+ + L N + VLL+SDP A K  +++ V VG+  DP   +GLAH+L
Sbjct: 34 IRKSDKDNRQYQAIRLDNGMVVLLVSDPQAVKSLSALVVPVGSLEDPEAYQGLAHYL 90

Endopeptidase that degrades small peptides of less than 7 kDa, such as glucagon and insulin.

Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) (taxid: 199310)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 4

EC: .

EC: 5

EC: 5

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	66
356572034	964	PREDICTED: zinc-metallopeptidase, peroxi	1.0	0.068	0.803	2e-24
356504785	964	PREDICTED: zinc-metallopeptidase, peroxi	1.0	0.068	0.803	2e-24
255582581	967	Insulin-degrading enzyme, putative [Rici	1.0	0.068	0.787	2e-24
334186056	851	insulysin [Arabidopsis thaliana] gi|3326	1.0	0.077	0.726	5e-23
6706418	989	protease-like protein [Arabidopsis thali	1.0	0.066	0.726	5e-23
449437948	952	PREDICTED: LOW QUALITY PROTEIN: zinc-met	1.0	0.069	0.75	1e-22
449437946	929	PREDICTED: LOW QUALITY PROTEIN: zinc-met	1.0	0.071	0.75	1e-22
297820544	980	predicted protein [Arabidopsis lyrata su	0.878	0.059	0.844	3e-22
350535204	971	insulin degrading enzyme [Solanum lycope	1.0	0.067	0.728	3e-22
297820540	892	peptidase M16 family protein [Arabidopsi	0.878	0.065	0.827	7e-22

>gi|356572034|ref|XP_003554175.1| PREDICTED: zinc-metallopeptidase, peroxisomal-like [Glycine max]

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 53/66 (80%), Positives = 58/66 (87%)

Query: 1  MAVGKDDVEIIKPRTDKRQYRRLVLKNSLQVLLISDPDADKCAASMNVSVGAFCDPVGLE 60
          MAVGK+DVEI+K R DKR YRR+VL+NSLQVLLISDPD DKCAASM+V VG F DP GLE
Sbjct: 1  MAVGKEDVEIVKARIDKRDYRRVVLRNSLQVLLISDPDTDKCAASMDVGVGYFSDPAGLE 60

Query: 61 GLAHFL 66
          GLAHFL
Sbjct: 61 GLAHFL 66

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356504785|ref|XP_003521175.1| PREDICTED: zinc-metallopeptidase, peroxisomal-like [Glycine max]

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 53/66 (80%), Positives = 58/66 (87%)

Query: 1  MAVGKDDVEIIKPRTDKRQYRRLVLKNSLQVLLISDPDADKCAASMNVSVGAFCDPVGLE 60
          MAVGK+DVEI+K R DKR YRR+VL+NSLQVLLISDPD DKCAASM+V VG F DP GLE
Sbjct: 1  MAVGKEDVEIVKARIDKRDYRRVVLRNSLQVLLISDPDTDKCAASMDVGVGYFSDPAGLE 60

Query: 61 GLAHFL 66
          GLAHFL
Sbjct: 61 GLAHFL 66

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255582581|ref|XP_002532073.1| Insulin-degrading enzyme, putative [Ricinus communis] gi|223528255|gb|EEF30307.1| Insulin-degrading enzyme, putative [Ricinus communis]

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 52/66 (78%), Positives = 61/66 (92%)

Query: 1  MAVGKDDVEIIKPRTDKRQYRRLVLKNSLQVLLISDPDADKCAASMNVSVGAFCDPVGLE 60
          MAVGK++VEI+K RTDKR+YRR+VL+NSL+VLLISDP+ DKCAASM+VSVG F DP GLE
Sbjct: 1  MAVGKEEVEIVKARTDKREYRRIVLRNSLEVLLISDPETDKCAASMDVSVGFFSDPAGLE 60

Query: 61 GLAHFL 66
          GLAHFL
Sbjct: 61 GLAHFL 66

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|334186056|ref|NP_567049.3| insulysin [Arabidopsis thaliana] gi|332646137|gb|AEE79658.1| insulysin [Arabidopsis thaliana]

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 53/73 (72%), Positives = 61/73 (83%), Gaps = 7/73 (9%)

Query: 1  MAVGKDDV-------EIIKPRTDKRQYRRLVLKNSLQVLLISDPDADKCAASMNVSVGAF 53
          MAVG ++        EI+KPRTDKR+YRR+VLKNSL+VLLISDP+ DKCAASMNVSVG+F
Sbjct: 1  MAVGMENATASGECGEILKPRTDKREYRRIVLKNSLEVLLISDPETDKCAASMNVSVGSF 60

Query: 54 CDPVGLEGLAHFL 66
           DP GLEGLAHFL
Sbjct: 61 TDPEGLEGLAHFL 73

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|6706418|emb|CAB66104.1| protease-like protein [Arabidopsis thaliana]

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 53/73 (72%), Positives = 61/73 (83%), Gaps = 7/73 (9%)

Query: 1  MAVGKDDV-------EIIKPRTDKRQYRRLVLKNSLQVLLISDPDADKCAASMNVSVGAF 53
          MAVG ++        EI+KPRTDKR+YRR+VLKNSL+VLLISDP+ DKCAASMNVSVG+F
Sbjct: 1  MAVGMENATASGECGEILKPRTDKREYRRIVLKNSLEVLLISDPETDKCAASMNVSVGSF 60

Query: 54 CDPVGLEGLAHFL 66
           DP GLEGLAHFL
Sbjct: 61 TDPEGLEGLAHFL 73

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449437948|ref|XP_004136752.1| PREDICTED: LOW QUALITY PROTEIN: zinc-metallopeptidase, peroxisomal-like [Cucumis sativus]

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 51/68 (75%), Positives = 58/68 (85%), Gaps = 2/68 (2%)

Query: 1  MAVGKDDV--EIIKPRTDKRQYRRLVLKNSLQVLLISDPDADKCAASMNVSVGAFCDPVG 58
          M VGK+ V  EI+KPR DKR+YRR+VLKNSL+VLL+SDPD DKCAASM V VG+F DP G
Sbjct: 1  MEVGKEQVTHEIVKPRNDKREYRRIVLKNSLEVLLVSDPDTDKCAASMTVDVGSFSDPEG 60

Query: 59 LEGLAHFL 66
          LEGLAHFL
Sbjct: 61 LEGLAHFL 68

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449437946|ref|XP_004136751.1| PREDICTED: LOW QUALITY PROTEIN: zinc-metallopeptidase, peroxisomal-like [Cucumis sativus]

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 51/68 (75%), Positives = 58/68 (85%), Gaps = 2/68 (2%)

Query: 1  MAVGKDDV--EIIKPRTDKRQYRRLVLKNSLQVLLISDPDADKCAASMNVSVGAFCDPVG 58
          M VGK+ V  EI+KPR DKR+YRR+VLKNSL+VLL+SDPD DKCAASM V VG+F DP G
Sbjct: 1  MEVGKEQVTHEIVKPRNDKREYRRIVLKNSLEVLLVSDPDTDKCAASMTVDVGSFSDPEG 60

Query: 59 LEGLAHFL 66
          LEGLAHFL
Sbjct: 61 LEGLAHFL 68

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297820544|ref|XP_002878155.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297323993|gb|EFH54414.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 49/58 (84%), Positives = 54/58 (93%)

Query: 9  EIIKPRTDKRQYRRLVLKNSLQVLLISDPDADKCAASMNVSVGAFCDPVGLEGLAHFL 66
          EI+KPRTDKR YRR+VLKNSL+VLLISDP+ DKCAASMNVSVG+F DP GLEGLAHFL
Sbjct: 21 EILKPRTDKRDYRRIVLKNSLEVLLISDPETDKCAASMNVSVGSFSDPQGLEGLAHFL 78

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|350535204|ref|NP_001233926.1| insulin degrading enzyme [Solanum lycopersicum] gi|15485612|emb|CAC67408.1| insulin degrading enzyme [Solanum lycopersicum]

 Score =  108 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 51/70 (72%), Positives = 59/70 (84%), Gaps = 4/70 (5%)

Query: 1  MAVGKDD----VEIIKPRTDKRQYRRLVLKNSLQVLLISDPDADKCAASMNVSVGAFCDP 56
          MAVGK +    VEI+KPR DKR YRR+VL+N+L++LLISDP+ DKCAASMNV VGAF DP
Sbjct: 1  MAVGKKEENMAVEIVKPRIDKRDYRRIVLQNNLEILLISDPETDKCAASMNVCVGAFSDP 60

Query: 57 VGLEGLAHFL 66
           GLEGLAHFL
Sbjct: 61 EGLEGLAHFL 70

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297820540|ref|XP_002878153.1| peptidase M16 family protein [Arabidopsis lyrata subsp. lyrata] gi|297323991|gb|EFH54412.1| peptidase M16 family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 48/58 (82%), Positives = 54/58 (93%)

Query: 9  EIIKPRTDKRQYRRLVLKNSLQVLLISDPDADKCAASMNVSVGAFCDPVGLEGLAHFL 66
          EI+KPRTDKR YRR+VLKNSL+VLLISDP+ DKCAAS+NVSVG+F DP GLEGLAHFL
Sbjct: 18 EILKPRTDKRDYRRIVLKNSLEVLLISDPETDKCAASLNVSVGSFSDPQGLEGLAHFL 75

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	66
TAIR|locus:2054346	970	AT2G41790 [Arabidopsis thalian	0.893	0.060	0.813	7.3e-20
SGD|S000004381	1027	STE23 "Metalloprotease involve	0.893	0.057	0.542	4.5e-11
TIGR_CMR|CPS_2134	968	CPS_2134 "zinc metallopeptidas	0.863	0.058	0.543	1.8e-10
UNIPROTKB|Q5T5N3	257	IDE "Insulin-degrading enzyme"	0.848	0.217	0.5	4.4e-10
MGI|MGI:96412	1019	Ide "insulin degrading enzyme"	0.969	0.062	0.453	6.7e-10
ASPGD|ASPL0000015933	1100	AN8044 [Emericella nidulans (t	0.833	0.05	0.545	7.4e-10
RGD|2861	1019	Ide "insulin degrading enzyme"	0.969	0.062	0.453	1.1e-09
UNIPROTKB|E1BW52	858	Gga.21599 "Uncharacterized pro	0.863	0.066	0.508	1.1e-09
UNIPROTKB|E1BTQ0	880	Gga.21599 "Uncharacterized pro	0.863	0.064	0.508	1.2e-09
UNIPROTKB|E1BW46	907	Gga.21599 "Uncharacterized pro	0.863	0.062	0.508	1.2e-09

TAIR|locus:2054346 AT2G41790 [Arabidopsis thaliana (taxid:3702)]

 Score = 248 (92.4 bits), Expect = 7.3e-20, P = 7.3e-20
 Identities = 48/59 (81%), Positives = 53/59 (89%)

Query:     8 VEIIKPRTDKRQYRRLVLKNSLQVLLISDPDADKCAASMNVSVGAFCDPVGLEGLAHFL 66
             VEI+KPRTD R+YR +VLKN LQVLLISDPD DKCAASM+VSVG+F DP GLEGLAHFL
Sbjct:    13 VEILKPRTDNREYRMIVLKNLLQVLLISDPDTDKCAASMSVSVGSFSDPQGLEGLAHFL 71

GO:0003824 "catalytic activity" evidence=IEA

GO:0004222 "metalloendopeptidase activity" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0006508 "proteolysis" evidence=IEA;ISS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

SGD|S000004381 STE23 "Metalloprotease involved" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 166 (63.5 bits), Expect = 4.5e-11, P = 4.5e-11
 Identities = 32/59 (54%), Positives = 43/59 (72%)

Query:     7 DVEIIKPRTDKRQYRRLVLKNSLQVLLISDPDADKCAASMNVSVGAFCDPVGLEGLAHF 65
             +++ +KP  D+R YR + L N L+ LLI DP ADK AAS++V++GAF DP  L GLAHF
Sbjct:    61 NLDFLKPDLDERSYRFIELPNKLKALLIQDPKADKAAASLDVNIGAFEDPKNLPGLAHF 119

GO:0007323 "peptide pheromone maturation" evidence=IGI

GO:0008237 "metallopeptidase activity" evidence=IEA;ISS

GO:0046872 "metal ion binding" evidence=IEA

GO:0019898 "extrinsic to membrane" evidence=IDA

GO:0004222 "metalloendopeptidase activity" evidence=IEA;IDA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0019236 "response to pheromone" evidence=IEA

GO:0008233 "peptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

TIGR_CMR|CPS_2134 CPS_2134 "zinc metallopeptidase, M16 family" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 160 (61.4 bits), Expect = 1.8e-10, P = 1.8e-10
 Identities = 31/57 (54%), Positives = 41/57 (71%)

Query:    10 IIKPRTDKRQYRRLVLKNSLQVLLISDPDADKCAASMNVSVGAFCDPVGLEGLAHFL 66
             ++K + D+RQYR + L N L+V+L+SD  ADK AASM+V +G   DP   EGLAHFL
Sbjct:    44 VVKSQNDQRQYRYVELDNGLKVILVSDSSADKSAASMDVHIGHMADPKDREGLAHFL 100

GO:0006508 "proteolysis" evidence=ISS

GO:0008237 "metallopeptidase activity" evidence=ISS

UNIPROTKB|Q5T5N3 IDE "Insulin-degrading enzyme" [Homo sapiens (taxid:9606)]

 Score = 146 (56.5 bits), Expect = 4.4e-10, P = 4.4e-10
 Identities = 28/56 (50%), Positives = 39/56 (69%)

Query:    10 IIKPRTDKRQYRRLVLKNSLQVLLISDPDADKCAASMNVSVGAFCDPVGLEGLAHF 65
             I K   DKR+YR L L N ++VLLISDP  DK +A+++V +G+  DP  + GL+HF
Sbjct:    40 ITKSPEDKREYRGLELANGIKVLLISDPTTDKSSAALDVHIGSLSDPPNIAGLSHF 95

GO:0004222 "metalloendopeptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

MGI|MGI:96412 Ide "insulin degrading enzyme" [Mus musculus (taxid:10090)]

 Score = 155 (59.6 bits), Expect = 6.7e-10, P = 6.7e-10
 Identities = 29/64 (45%), Positives = 45/64 (70%)

Query:     2 AVGKDDVEIIKPRTDKRQYRRLVLKNSLQVLLISDPDADKCAASMNVSVGAFCDPVGLEG 61
             A+ + + +I+K   DKR+YR L L N ++VLLISDP  DK +A+++V +G+  DP  + G
Sbjct:    46 AIQRIEDQIVKSPEDKREYRGLELANGIKVLLISDPTTDKSSAALDVHIGSLSDPPNIPG 105

Query:    62 LAHF 65
             L+HF
Sbjct:   106 LSHF 109

GO:0000166 "nucleotide binding" evidence=IEA

GO:0001540 "beta-amyloid binding" evidence=ISO

GO:0001948 "glycoprotein binding" evidence=ISO

GO:0003824 "catalytic activity" evidence=IEA

GO:0004222 "metalloendopeptidase activity" evidence=ISO

GO:0005102 "receptor binding" evidence=ISO

GO:0005524 "ATP binding" evidence=ISO

GO:0005576 "extracellular region" evidence=IEA

GO:0005615 "extracellular space" evidence=ISO

GO:0005634 "nucleus" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0005739 "mitochondrion" evidence=ISO;IDA

GO:0005777 "peroxisome" evidence=ISO

GO:0005782 "peroxisomal matrix" evidence=ISO

GO:0005829 "cytosol" evidence=ISO

GO:0005886 "plasma membrane" evidence=IEA

GO:0006200 "ATP catabolic process" evidence=ISO

GO:0006508 "proteolysis" evidence=ISO

GO:0008152 "metabolic process" evidence=IEA

GO:0008233 "peptidase activity" evidence=IEA

GO:0008237 "metallopeptidase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=ISO

GO:0008340 "determination of adult lifespan" evidence=ISO

GO:0009986 "cell surface" evidence=ISO

GO:0010815 "bradykinin catabolic process" evidence=ISO

GO:0010992 "ubiquitin homeostasis" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0016887 "ATPase activity" evidence=ISO

GO:0017046 "peptide hormone binding" evidence=ISO

GO:0031597 "cytosolic proteasome complex" evidence=ISO

GO:0031626 "beta-endorphin binding" evidence=ISO

GO:0032461 "positive regulation of protein oligomerization" evidence=ISO

GO:0042277 "peptide binding" evidence=ISO

GO:0042447 "hormone catabolic process" evidence=ISO

GO:0042803 "protein homodimerization activity" evidence=ISO

GO:0043130 "ubiquitin binding" evidence=ISO

GO:0043559 "insulin binding" evidence=ISO

GO:0044257 "cellular protein catabolic process" evidence=ISO

GO:0045861 "negative regulation of proteolysis" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

GO:0050435 "beta-amyloid metabolic process" evidence=ISO

GO:0051260 "protein homooligomerization" evidence=ISO

GO:0051289 "protein homotetramerization" evidence=ISO

GO:0051291 "protein heterooligomerization" evidence=ISO

GO:0051603 "proteolysis involved in cellular protein catabolic process" evidence=ISO

GO:1901142 "insulin metabolic process" evidence=ISO

GO:1901143 "insulin catabolic process" evidence=ISO

ASPGD|ASPL0000015933 AN8044 [Emericella nidulans (taxid:162425)]

 Score = 155 (59.6 bits), Expect = 7.4e-10, P = 7.4e-10
 Identities = 30/55 (54%), Positives = 38/55 (69%)

Query:    12 KPRTDKRQYRRLVLKNSLQVLLISDPDADKCAASMNVSVGAFCDPVGLEGLAHFL 66
             KP  D R YR + L N L+ LL+ DP+ DK AA+M+V VG+F DP  L+GLAH L
Sbjct:    15 KPSLDDRSYRVIQLPNKLEALLVHDPETDKAAAAMDVHVGSFSDPADLQGLAHGL 69

GO:0005829 "cytosol" evidence=IEA

GO:0019898 "extrinsic to membrane" evidence=IEA

GO:0004222 "metalloendopeptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0007323 "peptide pheromone maturation" evidence=IEA

RGD|2861 Ide "insulin degrading enzyme" [Rattus norvegicus (taxid:10116)]

 Score = 153 (58.9 bits), Expect = 1.1e-09, P = 1.1e-09
 Identities = 29/64 (45%), Positives = 44/64 (68%)

Query:     2 AVGKDDVEIIKPRTDKRQYRRLVLKNSLQVLLISDPDADKCAASMNVSVGAFCDPVGLEG 61
             A+ + +  I+K   DKR+YR L L N ++VLLISDP  DK +A+++V +G+  DP  + G
Sbjct:    46 AIQRIEDHIVKSPEDKREYRGLELANGIKVLLISDPTTDKSSAALDVHIGSLSDPPNIPG 105

Query:    62 LAHF 65
             L+HF
Sbjct:   106 LSHF 109

GO:0001540 "beta-amyloid binding" evidence=IPI

GO:0001948 "glycoprotein binding" evidence=IEA;ISO

GO:0003824 "catalytic activity" evidence=IEA

GO:0004222 "metalloendopeptidase activity" evidence=ISO;ISS;IDA;IMP

GO:0005102 "receptor binding" evidence=IEA;ISO

GO:0005524 "ATP binding" evidence=ISO;ISS;IMP;IPI

GO:0005615 "extracellular space" evidence=ISO;IDA

GO:0005634 "nucleus" evidence=ISO;IDA

GO:0005737 "cytoplasm" evidence=ISO

GO:0005739 "mitochondrion" evidence=IEA;ISO

GO:0005777 "peroxisome" evidence=ISO

GO:0005782 "peroxisomal matrix" evidence=IDA

GO:0005829 "cytosol" evidence=ISO;IDA

GO:0005886 "plasma membrane" evidence=IEA

GO:0006200 "ATP catabolic process" evidence=IDA

GO:0006508 "proteolysis" evidence=ISO

GO:0008233 "peptidase activity" evidence=TAS

GO:0008270 "zinc ion binding" evidence=ISO;ISS;IMP

GO:0008340 "determination of adult lifespan" evidence=IEA;ISO

GO:0009986 "cell surface" evidence=ISO;IDA

GO:0010815 "bradykinin catabolic process" evidence=ISO;ISS

GO:0010992 "ubiquitin homeostasis" evidence=IEA;ISO

GO:0016887 "ATPase activity" evidence=IDA

GO:0017046 "peptide hormone binding" evidence=IPI

GO:0031597 "cytosolic proteasome complex" evidence=IDA

GO:0031626 "beta-endorphin binding" evidence=IMP

GO:0032461 "positive regulation of protein oligomerization" evidence=IEA;ISO

GO:0042277 "peptide binding" evidence=ISO

GO:0042447 "hormone catabolic process" evidence=IDA

GO:0042803 "protein homodimerization activity" evidence=ISO;IDA

GO:0043130 "ubiquitin binding" evidence=IEA;ISO

GO:0043171 "peptide catabolic process" evidence=TAS

GO:0043559 "insulin binding" evidence=ISO;IMP

GO:0044257 "cellular protein catabolic process" evidence=IDA

GO:0045861 "negative regulation of proteolysis" evidence=IDA

GO:0046872 "metal ion binding" evidence=IEA

GO:0050435 "beta-amyloid metabolic process" evidence=ISO;ISS;IMP

GO:0051260 "protein homooligomerization" evidence=ISO

GO:0051289 "protein homotetramerization" evidence=IDA

GO:0051291 "protein heterooligomerization" evidence=IDA

GO:0051603 "proteolysis involved in cellular protein catabolic process" evidence=ISO;IMP

GO:1901142 "insulin metabolic process" evidence=ISO

GO:1901143 "insulin catabolic process" evidence=IEA;ISO

UNIPROTKB|E1BW52 Gga.21599 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 152 (58.6 bits), Expect = 1.1e-09, P = 1.1e-09
 Identities = 29/57 (50%), Positives = 40/57 (70%)

Query:     9 EIIKPRTDKRQYRRLVLKNSLQVLLISDPDADKCAASMNVSVGAFCDPVGLEGLAHF 65
             EIIK   DKR+YR L L N ++ LLISDP  DK +A+++V +G+  DP  + GL+HF
Sbjct:    12 EIIKSPEDKREYRGLELANGIKALLISDPTTDKSSAALDVHIGSLSDPPNIAGLSHF 68

GO:0004222 "metalloendopeptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|E1BTQ0 Gga.21599 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 152 (58.6 bits), Expect = 1.2e-09, P = 1.2e-09
 Identities = 29/57 (50%), Positives = 40/57 (70%)

Query:     9 EIIKPRTDKRQYRRLVLKNSLQVLLISDPDADKCAASMNVSVGAFCDPVGLEGLAHF 65
             EIIK   DKR+YR L L N ++ LLISDP  DK +A+++V +G+  DP  + GL+HF
Sbjct:    12 EIIKSPEDKREYRGLELANGIKALLISDPTTDKSSAALDVHIGSLSDPPNIAGLSHF 68

GO:0004222 "metalloendopeptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|E1BW46 Gga.21599 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 152 (58.6 bits), Expect = 1.2e-09, P = 1.2e-09
 Identities = 29/57 (50%), Positives = 40/57 (70%)

Query:     9 EIIKPRTDKRQYRRLVLKNSLQVLLISDPDADKCAASMNVSVGAFCDPVGLEGLAHF 65
             EIIK   DKR+YR L L N ++ LLISDP  DK +A+++V +G+  DP  + GL+HF
Sbjct:    12 EIIKSPEDKREYRGLELANGIKALLISDPTTDKSSAALDVHIGSLSDPPNIAGLSHF 68

GO:0001948 "glycoprotein binding" evidence=IEA

GO:0004222 "metalloendopeptidase activity" evidence=IEA

GO:0005102 "receptor binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005615 "extracellular space" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005777 "peroxisome" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0008340 "determination of adult lifespan" evidence=IEA

GO:0009986 "cell surface" evidence=IEA

GO:0010815 "bradykinin catabolic process" evidence=IEA

GO:0010992 "ubiquitin homeostasis" evidence=IEA

GO:0032461 "positive regulation of protein oligomerization" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0043130 "ubiquitin binding" evidence=IEA

GO:0043559 "insulin binding" evidence=IEA

GO:0050435 "beta-amyloid metabolic process" evidence=IEA

GO:0051260 "protein homooligomerization" evidence=IEA

GO:0051603 "proteolysis involved in cellular protein catabolic process" evidence=IEA

GO:1901143 "insulin catabolic process" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: Al_scaffold_0005_2665 annotation not avaliable (980 aa) (Arabidopsis lyrata)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	66
COG1025	937	COG1025, Ptr, Secreted/periplasmic Zn-dependent pe	7e-19
PRK15101	961	PRK15101, PRK15101, protease3; Provisional	6e-12
TIGR02110	696	TIGR02110, PQQ_syn_pqqF, coenzyme PQQ biosynthesis	1e-09
pfam00675	149	pfam00675, Peptidase_M16, Insulinase (Peptidase fa	1e-04
COG0612	438	COG0612, PqqL, Predicted Zn-dependent peptidases [	1e-04

>gnl|CDD|223956 COG1025, Ptr, Secreted/periplasmic Zn-dependent peptidases, insulinase-like [Posttranslational modification, protein turnover, chaperones]

 Score = 77.8 bits (192), Expect = 7e-19
 Identities = 31/57 (54%), Positives = 39/57 (68%)

Query: 10 IIKPRTDKRQYRRLVLKNSLQVLLISDPDADKCAASMNVSVGAFCDPVGLEGLAHFL 66
          I KP  D R+YR + L N L+ LL+SDP ADK +A++ V VG+F DP    GLAHFL
Sbjct: 14 IHKPALDDRKYRAIKLPNGLRALLVSDPQADKSSAALVVPVGSFDDPEEYPGLAHFL 70

Length = 937

>gnl|CDD|185056 PRK15101, PRK15101, protease3; Provisional

 Score = 58.1 bits (141), Expect = 6e-12
 Identities = 26/57 (45%), Positives = 36/57 (63%)

Query: 10 IIKPRTDKRQYRRLVLKNSLQVLLISDPDADKCAASMNVSVGAFCDPVGLEGLAHFL 66
          I K   D RQY+ + L N + VLL+SDP A K  A++ + VG+  DP   +GLAH+L
Sbjct: 34 IRKSEKDPRQYQAIRLDNGMTVLLVSDPQAVKSLAALALPVGSLEDPDAQQGLAHYL 90

Length = 961

>gnl|CDD|233732 TIGR02110, PQQ_syn_pqqF, coenzyme PQQ biosynthesis probable peptidase PqqF

 Score = 51.4 bits (123), Expect = 1e-09
 Identities = 21/46 (45%), Positives = 28/46 (60%)

Query: 21 RRLVLKNSLQVLLISDPDADKCAASMNVSVGAFCDPVGLEGLAHFL 66
          RR+ L N L+V L   PDA + AA + V+ G+  +P    GLAHFL
Sbjct: 1  RRITLPNGLRVHLYHQPDAKRAAALLRVAAGSHDEPSAWPGLAHFL 46

In a subset of species that make coenzyme PQQ (pyrrolo-quinoline-quinone), this probable peptidase is found in the PQQ biosynthesis region and is thought to act as a protease on PqqA (TIGR02107), a probable peptide precursor of the coenzyme. PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 696

>gnl|CDD|216056 pfam00675, Peptidase_M16, Insulinase (Peptidase family M16)

 Score = 36.9 bits (86), Expect = 1e-04
 Identities = 14/37 (37%), Positives = 19/37 (51%)

Query: 30 QVLLISDPDADKCAASMNVSVGAFCDPVGLEGLAHFL 66
          +V    DP AD  A  + +  G+  +P    GLAHFL
Sbjct: 1  RVASEHDPPADTSAVGLWIDAGSRYEPDDNNGLAHFL 37

Length = 149

>gnl|CDD|223685 COG0612, PqqL, Predicted Zn-dependent peptidases [General function prediction only]

 Score = 37.4 bits (87), Expect = 1e-04
 Identities = 15/48 (31%), Positives = 24/48 (50%)

Query: 19 QYRRLVLKNSLQVLLISDPDADKCAASMNVSVGAFCDPVGLEGLAHFL 66
            +   L N L+V+   +P A   +  + V  G+  +P G  G+AHFL
Sbjct: 16 GLQVFTLPNGLRVITYPNPTAPTVSLDVWVKAGSRAEPAGKAGIAHFL 63

Length = 438

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	66
PRK15101	961	protease3; Provisional	99.61
COG1025	937	Ptr Secreted/periplasmic Zn-dependent peptidases,	99.59
KOG0959	974	consensus N-arginine dibasic convertase NRD1 and r	99.59
TIGR02110	696	PQQ_syn_pqqF coenzyme PQQ biosynthesis probable pe	99.3
COG0612	438	PqqL Predicted Zn-dependent peptidases [General fu	99.13
KOG0960	467	consensus Mitochondrial processing peptidase, beta	98.87
PF00675	149	Peptidase_M16: Insulinase (Peptidase family M16) T	98.73
KOG2067	472	consensus Mitochondrial processing peptidase, alph	98.61
KOG2583	429	consensus Ubiquinol cytochrome c reductase, subuni	98.44
PTZ00432	1119	falcilysin; Provisional	97.21
PRK15101	961	protease3; Provisional	96.59
PF03410	590	Peptidase_M44: Protein G1; InterPro: IPR005072 In	85.91

>PRK15101 protease3; Provisional

Probab=99.61  E-value=7.2e-16  Score=113.73  Aligned_cols=60  Identities=43%  Similarity=0.695  Sum_probs=57.2

Q ss_pred             CcceeecCCCccceEEEEccCCCEEEEEEcCCCCeEEEEEEEcccCCCCCCCCCcceeeC
Q 037967            7 DVEIIKPRTDKRQYRRLVLKNSLQVLLISDPDADKCAASMNVSVGAFCDPVGLEGLAHFL   66 (66)
Q Consensus         7 ~~~~~k~~~d~~~~~~~~L~NGl~v~~~~~~~~~~~~~~~~v~~Gs~~ep~~~~GlAHfl   66 (66)
                      ...+.|+..|.+.|++.+|+|||+|++++++..+.+++++++++||++||++++||||||
T Consensus        31 ~~~~~k~~~d~~~~~~~~L~NGL~v~l~~~~~~~~~~~~l~v~~Gs~~ep~~~~GlAHfl   90 (961)
T PRK15101         31 QETIRKSEKDPRQYQAIRLDNGMTVLLVSDPQAVKSLAALALPVGSLEDPDAQQGLAHYL   90 (961)
T ss_pred             cccCcCCCCCccceEEEEeCCCCEEEEEeCCCCcceeEEEEeCcCCCCCCCCCCchHHHH
Confidence            345899999999999999999999999999999999999999999999999999999996

>COG1025 Ptr Secreted/periplasmic Zn-dependent peptidases, insulinase-like [Posttranslational modification, protein turnover, chaperones]

Probab=99.59  E-value=6.6e-16  Score=114.78  Aligned_cols=61  Identities=51%  Similarity=0.782  Sum_probs=58.3

Q ss_pred             CCcceeecCCCccceEEEEccCCCEEEEEEcCCCCeEEEEEEEcccCCCCCCCCCcceeeC
Q 037967            6 DDVEIIKPRTDKRQYRRLVLKNSLQVLLISDPDADKCAASMNVSVGAFCDPVGLEGLAHFL   66 (66)
Q Consensus         6 ~~~~~~k~~~d~~~~~~~~L~NGl~v~~~~~~~~~~~~~~~~v~~Gs~~ep~~~~GlAHfl   66 (66)
                      ....+.+|..|+++|+.++|||||++++++||..+++++++.|++||.+||.+.+||||||
T Consensus        10 ~~~~i~~~~~d~r~y~~I~LpNGl~~LlisDP~a~ks~aAL~V~vGs~~DP~e~~GLAHfl   70 (937)
T COG1025          10 IVLTIHKPALDDRKYRAIKLPNGLRALLVSDPQADKSSAALVVPVGSFDDPEEYPGLAHFL   70 (937)
T ss_pred             chhhcccCcccCcceeEEECCCCceEEEecCCCCCccceeEEeecCCCCChhhcccHHHHH
Confidence            4566899999999999999999999999999999999999999999999999999999996

>KOG0959 consensus N-arginine dibasic convertase NRD1 and related Zn2+-dependent endopeptidases, insulinase superfamily [Posttranslational modification, protein turnover, chaperones]

Probab=99.59  E-value=6.7e-16  Score=115.42  Aligned_cols=63  Identities=51%  Similarity=0.873  Sum_probs=59.9

Q ss_pred             CCCCcceeecCCCccceEEEEccCCCEEEEEEcCCCCeEEEEEEEcccCCCCCCCCCcceeeC
Q 037967            4 GKDDVEIIKPRTDKRQYRRLVLKNSLQVLLISDPDADKCAASMNVSVGAFCDPVGLEGLAHFL   66 (66)
Q Consensus         4 ~~~~~~~~k~~~d~~~~~~~~L~NGl~v~~~~~~~~~~~~~~~~v~~Gs~~ep~~~~GlAHfl   66 (66)
                      .+....+.|+..|.+.|+...|+|||++++++||.++++++++.|++||++||++.+|||||+
T Consensus        12 ~~~~~~~~k~~~d~r~yr~~~L~Ngl~alLisDp~tD~ssaal~V~vGS~~DP~dl~GLAHF~   74 (974)
T KOG0959|consen   12 KREDVSIVKSLGDTREYRGIELTNGLRALLISDPKTDKSSAALDVKVGSFSDPEDLQGLAHFC   74 (974)
T ss_pred             hhcccccccCCCCccceeEEEecCCceEEEecCCCCCccceeeeeeccccCCccccccHHHHH
Confidence            456677999999999999999999999999999999999999999999999999999999996

>TIGR02110 PQQ_syn_pqqF coenzyme PQQ biosynthesis probable peptidase PqqF

Probab=99.30  E-value=2.4e-12  Score=94.23  Aligned_cols=45  Identities=44%  Similarity=0.725  Sum_probs=43.3

Q ss_pred             EEEccCCCEEEEEEcCCCCeEEEEEEEcccCCCCCCCCCcceeeC
Q 037967           22 RLVLKNSLQVLLISDPDADKCAASMNVSVGAFCDPVGLEGLAHFL   66 (66)
Q Consensus        22 ~~~L~NGl~v~~~~~~~~~~~~~~~~v~~Gs~~ep~~~~GlAHfl   66 (66)
                      +++|+|||+|+++++++.+.+++.++|++||++||++++|+|||+
T Consensus         2 ~~tL~NGLrVllv~~p~~p~vav~l~v~aGS~~Ep~~~~GLAHfL   46 (696)
T TIGR02110         2 RITLPNGLRVHLYHQPDAKRAAALLRVAAGSHDEPSAWPGLAHFL   46 (696)
T ss_pred             eEEcCCCCEEEEEECCCCCEEEEEEEEeeccCCCCCCCCcHHHHH
Confidence            578999999999999999999999999999999999999999995

In a subset of species that make coenzyme PQQ (pyrrolo-quinoline-quinone), this probable peptidase is found in the PQQ biosynthesis region and is thought to act as a protease on PqqA (TIGR02107), a probable peptide precursor of the coenzyme. PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.

>COG0612 PqqL Predicted Zn-dependent peptidases [General function prediction only]

Probab=99.13  E-value=8.4e-11  Score=80.96  Aligned_cols=49  Identities=31%  Similarity=0.542  Sum_probs=46.7

Q ss_pred             cceEEEEccCCCEEEEEEcCCCCeEEEEEEEcccCCCCCCCCCcceeeC
Q 037967           18 RQYRRLVLKNSLQVLLISDPDADKCAASMNVSVGAFCDPVGLEGLAHFL   66 (66)
Q Consensus        18 ~~~~~~~L~NGl~v~~~~~~~~~~~~~~~~v~~Gs~~ep~~~~GlAHfl   66 (66)
                      ..++..+|+||+++++.+++..+.+++.+++++||.+|++++.|+||||
T Consensus        15 ~~~~~~~L~nGl~~~~~~~~~~~~vs~~~~v~~Gs~~e~~~~~G~AH~l   63 (438)
T COG0612          15 PGLQVFTLPNGLRVITYPNPTAPTVSLDVWVKAGSRAEPAGKAGIAHFL   63 (438)
T ss_pred             ccceEEEcCCCCEEEEEeCCCCCEEEEEEEEeecccCCCCCcccHHHHH
Confidence            3488999999999999999999999999999999999999999999996

>KOG0960 consensus Mitochondrial processing peptidase, beta subunit, and related enzymes (insulinase superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.87  E-value=2e-09  Score=75.27  Aligned_cols=49  Identities=22%  Similarity=0.270  Sum_probs=45.4

Q ss_pred             ccceEEEEccCCCEEEEEEcCCCCeEEEEEEEcccCCCCCCCCCcceeeC
Q 037967           17 KRQYRRLVLKNSLQVLLISDPDADKCAASMNVSVGAFCDPVGLEGLAHFL   66 (66)
Q Consensus        17 ~~~~~~~~L~NGl~v~~~~~~~~~~~~~~~~v~~Gs~~ep~~~~GlAHfl   66 (66)
                      -++.+..+|+||++|...++ +..++++++|+.+||+.|.+...|.||||
T Consensus        31 ~P~t~vttL~NGlrVaTE~~-~a~TATVGVwidaGSR~EnekNNG~ahFL   79 (467)
T KOG0960|consen   31 VPETEVTTLPNGLRVATEHN-SASTATVGVWIDAGSRFENEKNNGTAHFL   79 (467)
T ss_pred             CCcceEEEcCCCcEEEeccC-CCcceEEEEEeccCccccccccccHHHHH
Confidence            35677899999999999888 89999999999999999999999999996

>PF00675 Peptidase_M16: Insulinase (Peptidase family M16) This is family M16 in the peptidase classification

Probab=98.73  E-value=9.4e-09  Score=61.59  Aligned_cols=37  Identities=35%  Similarity=0.639  Sum_probs=34.4

Q ss_pred             EEEEEEcCCCCeEEEEEEEcccCCCCCCCCCcceeeC
Q 037967           30 QVLLISDPDADKCAASMNVSVGAFCDPVGLEGLAHFL   66 (66)
Q Consensus        30 ~v~~~~~~~~~~~~~~~~v~~Gs~~ep~~~~GlAHfl   66 (66)
                      +|+++++|..+.+++++.+++|+++||++++|+||++
T Consensus         1 ~V~~~~~~~~~~~~~~l~~~~Gs~~e~~~~~G~a~ll   37 (149)
T PF00675_consen    1 KVVLVEDPGSPVVSVSLVFKAGSRYEPPGKPGLAHLL   37 (149)
T ss_dssp             EEEEEESTTSSEEEEEEEES-SGGGSCTTTTTHHHHH
T ss_pred             CEEEEEcCCCCEEEEEEEEeeccCCCCCCCCchhhhh
Confidence            6899999999999999999999999999999999974

; InterPro: IPR011765 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. The majority of the sequences in this entry are metallopeptidases and non-peptidase homologs belong to MEROPS peptidase family M16 (clan ME), subfamilies M16A, M16B and M16C; they include: Insulinase, insulin-degrading enzyme (3.4.24.56 from EC) Mitochondrial processing peptidase alpha subunit, (Alpha-MPP, 3.4.24.64 from EC) Pitrlysin, Protease III precursor (3.4.24.55 from EC) Nardilysin, (3.4.24.61 from EC) Ubiquinol-cytochrome C reductase complex core protein I,mitochondrial precursor (1.10.2.2 from EC) Coenzyme PQQ synthesis protein F (3.4.99 from EC) These proteins do not share many regions of sequence similarity; the most noticeable is in the N-terminal section. This region includes a conserved histidine followed, two residues later by a glutamate and another histidine. In pitrilysin, it has been shown [] that this H-x-x-E-H motif is involved in enzymatic activity; the two histidines bind zinc and the glutamate is necessary for catalytic activity. The proteins classified as non-peptidase homologues either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity. ; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 3P7L_A 3P7O_A 3TUV_A 3GO9_A 1BE3_B 1PP9_B 2A06_B 1SQB_B 1SQP_B 1L0N_B ....

>KOG2067 consensus Mitochondrial processing peptidase, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=98.61  E-value=4.6e-08  Score=68.68  Aligned_cols=47  Identities=23%  Similarity=0.444  Sum_probs=43.6

Q ss_pred             ceEEEEccCCCEEEEEEcCCCCeEEEEEEEcccCCCCCCCCCcceeeC
Q 037967           19 QYRRLVLKNSLQVLLISDPDADKCAASMNVSVGAFCDPVGLEGLAHFL   66 (66)
Q Consensus        19 ~~~~~~L~NGl~v~~~~~~~~~~~~~~~~v~~Gs~~ep~~~~GlAHfl   66 (66)
                      +.+..+|||||+|.....++ +.+++++.|++||++|.+...|++|||
T Consensus        24 ~~kvttL~NGlkvase~~pg-~f~~vGlyIdsGsrYE~~~~~GisH~l   70 (472)
T KOG2067|consen   24 NTKVTTLPNGLKVASENTPG-QFCTVGLYIDSGSRYEAKYFSGISHFL   70 (472)
T ss_pred             cceeeecCCccEEeccCCCC-CceEEEEEEecCccccCcCcccHHHHH
Confidence            67788999999999988885 899999999999999999999999996

>KOG2583 consensus Ubiquinol cytochrome c reductase, subunit QCR2 [Energy production and conversion]

Probab=98.44  E-value=1.4e-07  Score=65.99  Aligned_cols=46  Identities=26%  Similarity=0.396  Sum_probs=41.9

Q ss_pred             eEEEEccCCCEEEEEEcCCCCeEEEEEEEcccCCCCCCCCCcceeeC
Q 037967           20 YRRLVLKNSLQVLLISDPDADKCAASMNVSVGAFCDPVGLEGLAHFL   66 (66)
Q Consensus        20 ~~~~~L~NGl~v~~~~~~~~~~~~~~~~v~~Gs~~ep~~~~GlAHfl   66 (66)
                      -+..+|.|||+|.-++.+ .+++++.+.+++||++||.+++|++|+|
T Consensus        23 ~~~~kl~ngL~Vas~e~~-~~is~l~l~~~AGSRYe~~~~~G~sHll   68 (429)
T KOG2583|consen   23 SKTTKLVNGLTVASREAP-TAISSLSLAFRAGSRYEPADQQGLSHLL   68 (429)
T ss_pred             hhhhccccceEEEeccCC-CcceEEEEEEecCccCCccccccHHHHH
Confidence            345689999999999988 5999999999999999999999999985

>PTZ00432 falcilysin; Provisional

Probab=97.21  E-value=0.00063  Score=52.69  Aligned_cols=45  Identities=20%  Similarity=0.212  Sum_probs=35.7

Q ss_pred             cceEEEEccCCCEEEEEEcCC--CCeEEEEEEEcccCCCCCCCCCcceeeC
Q 037967           18 RQYRRLVLKNSLQVLLISDPD--ADKCAASMNVSVGAFCDPVGLEGLAHFL   66 (66)
Q Consensus        18 ~~~~~~~L~NGl~v~~~~~~~--~~~~~~~~~v~~Gs~~ep~~~~GlAHfl   66 (66)
                      .-+.+.-.+||++|+.+..++  .+..++++++++|+.    +.+|+||||
T Consensus        90 ~~~~~~H~~nGl~vl~~~~~d~~~~~~~f~i~f~T~~~----d~~G~aH~L  136 (1119)
T PTZ00432         90 VATVYSHKKTGLQVISLKTNDSSGKEMCFDFYVPTPPH----NDKGIPHIL  136 (1119)
T ss_pred             EEEEEEEcCCCCEEEEEecCCCccceeEEEEEecCCCC----CCcchhHHH
Confidence            445566678999999988665  357899999999973    458999986

>PRK15101 protease3; Provisional

Probab=96.59  E-value=0.002  Score=48.40  Aligned_cols=46  Identities=17%  Similarity=0.132  Sum_probs=41.4

Q ss_pred             eEEEEccCCCEEEEEEcC---CCCeEEEEEEEcccCCCCCCCCCcceee
Q 037967           20 YRRLVLKNSLQVLLISDP---DADKCAASMNVSVGAFCDPVGLEGLAHF   65 (66)
Q Consensus        20 ~~~~~L~NGl~v~~~~~~---~~~~~~~~~~v~~Gs~~ep~~~~GlAHf   65 (66)
                      ...+.++||++|++.+++   +.|++.+.+.+++|+..+++...|++.+
T Consensus       523 p~~i~~~~g~~vw~~~d~~f~~~Pk~~i~~~~~~~~~~~~~~~~~l~~L  571 (961)
T PRK15101        523 PELIVDEPGLRVVYMPSQYFADEPKADISLVLRNPKAMDSARNQVLFAL  571 (961)
T ss_pred             CeEEEcCCCeEEEEeCCCccccCCCEEEEEEEeCCCccCCHHHHHHHHH
Confidence            467889999999999999   7899999999999999999888888765

>PF03410 Peptidase_M44: Protein G1; InterPro: IPR005072 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=85.91  E-value=0.39  Score=35.28  Aligned_cols=42  Identities=21%  Similarity=0.347  Sum_probs=29.2

Q ss_pred             EEccCCCEEEEEEcCCCCeEEEEEEEcccCCCCCCCCCcceeeC
Q 037967           23 LVLKNSLQVLLISDPDADKCAASMNVSVGAFCDPVGLEGLAHFL   66 (66)
Q Consensus        23 ~~L~NGl~v~~~~~~~~~~~~~~~~v~~Gs~~ep~~~~GlAHfl   66 (66)
                      +.|+||.+|++.+.-. .-+.+++. +-|--.|-.+.-|+||+|
T Consensus         2 IvL~NGVRiFin~~M~-KDIYlGIs-~FGFe~DI~~iLGiAHLL   43 (590)
T PF03410_consen    2 IVLSNGVRIFINPSMK-KDIYLGIS-NFGFENDIGEILGIAHLL   43 (590)
T ss_pred             eEecCceEEEecCccc-cceEEeec-ccccccchHHHHhHHHHH
Confidence            5799999999854332 22344432 466667778899999986

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M44 (clan ME). The active site residues for members of this family and family M16 occur in the motif HXXEHProtein. The type example is the vaccinia virus-type metalloendopeptidase G1 from vaccinia virus, it is a metalloendopeptidase expressed by many Poxviridae which appears to play a role in the maturation of viral proteins.; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0019067 viral assembly, maturation, egress, and release

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	66
3tuv_A	1019	Crystal Structure Of Insulysin With Bound Atp Lengt		5e-12
3p7o_A	1019	Rat Insulin Degrading Enzyme (Insulysin) E111f Muta		5e-12
3p7l_A	978	Rat Insulin Degrading Enzyme (Insulysin) Length = 9		5e-12
3qz2_A	990	The Structure Of Cysteine-Free Human Insulin Degrad		7e-12
3hgz_A	969	Crystal Structure Of Human Insulin-Degrading Enzyme		7e-12
3e4z_A	990	Crystal Structure Of Human Insulin Degrading Enzyme		7e-12
3e4a_A	1019	Human Ide-Inhibitor Complex At 2.6 Angstrom Resolut		7e-12
2wby_A	990	Crystal Structure Of Human Insulin-Degrading Enzyme		7e-12
3cww_A	990	Crystal Structure Of Ide-Bradykinin Complex Length		7e-12
2jg4_A	990	Substrate-Free Ide Structure In Its Closed Conforma		2e-11
2g47_A	990	Crystal Structure Of Human Insulin-Degrading Enzyme		2e-11
1q2l_A	939	Crystal Structure Of Pitrilysin Length = 939		4e-08

>pdb|3TUV|A Chain A, Crystal Structure Of Insulysin With Bound Atp Length = 1019

Iteration: 1
 Score = 65.9 bits (159), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 29/64 (45%), Positives = 44/64 (68%)
Query: 2   AVGKDDVEIIKPRTDKRQYRRLVLKNSLQVLLISDPDADKCAASMNVSVGAFCDPVGLEG 61
           A+ + +  I+K   DKR+YR L L N ++VLLISDP  DK +A+++V +G+  DP  + G
Sbjct: 46  AIQRIEDHIVKSPEDKREYRGLELANGIKVLLISDPTTDKSSAALDVHIGSLSDPPNIPG 105
Query: 62  LAHF 65
           L+HF
Sbjct: 106 LSHF 109

>pdb|3P7O|A Chain A, Rat Insulin Degrading Enzyme (Insulysin) E111f Mutant With Two Bound Peptides Length = 1019

Iteration: 1
 Score = 65.9 bits (159), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 29/64 (45%), Positives = 44/64 (68%)
Query: 2   AVGKDDVEIIKPRTDKRQYRRLVLKNSLQVLLISDPDADKCAASMNVSVGAFCDPVGLEG 61
           A+ + +  I+K   DKR+YR L L N ++VLLISDP  DK +A+++V +G+  DP  + G
Sbjct: 46  AIQRIEDHIVKSPEDKREYRGLELANGIKVLLISDPTTDKSSAALDVHIGSLSDPPNIPG 105
Query: 62  LAHF 65
           L+HF
Sbjct: 106 LSHF 109

>pdb|3P7L|A Chain A, Rat Insulin Degrading Enzyme (Insulysin) Length = 978

Iteration: 1
 Score = 65.9 bits (159), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 29/64 (45%), Positives = 44/64 (68%)
Query: 2  AVGKDDVEIIKPRTDKRQYRRLVLKNSLQVLLISDPDADKCAASMNVSVGAFCDPVGLEG 61
          A+ + +  I+K   DKR+YR L L N ++VLLISDP  DK +A+++V +G+  DP  + G
Sbjct: 5  AIQRIEDHIVKSPEDKREYRGLELANGIKVLLISDPTTDKSSAALDVHIGSLSDPPNIPG 64
Query: 62 LAHF 65
          L+HF
Sbjct: 65 LSHF 68

>pdb|3QZ2|A Chain A, The Structure Of Cysteine-Free Human Insulin Degrading Enzyme Length = 990

Iteration: 1
 Score = 65.5 bits (158), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 29/57 (50%), Positives = 40/57 (70%)
Query: 10 IIKPRTDKRQYRRLVLKNSLQVLLISDPDADKCAASMNVSVGAFCDPVGLEGLAHFL 66
          I K   DKR+YR L L N ++VLLISDP  DK +A+++V +G+  DP  + GL+HFL
Sbjct: 25 ITKSPEDKREYRGLELANGIKVLLISDPTTDKSSAALDVHIGSLSDPPNIAGLSHFL 81

>pdb|3HGZ|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In Complex With Amylin Length = 969

Iteration: 1
 Score = 65.5 bits (158), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 29/57 (50%), Positives = 40/57 (70%)
Query: 10 IIKPRTDKRQYRRLVLKNSLQVLLISDPDADKCAASMNVSVGAFCDPVGLEGLAHFL 66
          I K   DKR+YR L L N ++VLLISDP  DK +A+++V +G+  DP  + GL+HFL
Sbjct: 12 ITKSPEDKREYRGLELANGIKVLLISDPTTDKSSAALDVHIGSLSDPPNIAGLSHFL 68

>pdb|3E4Z|A Chain A, Crystal Structure Of Human Insulin Degrading Enzyme In Complex With Insulin-Like Growth Factor Ii Length = 990

Iteration: 1
 Score = 65.5 bits (158), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 29/57 (50%), Positives = 40/57 (70%)
Query: 10 IIKPRTDKRQYRRLVLKNSLQVLLISDPDADKCAASMNVSVGAFCDPVGLEGLAHFL 66
          I K   DKR+YR L L N ++VLLISDP  DK +A+++V +G+  DP  + GL+HFL
Sbjct: 25 ITKSPEDKREYRGLELANGIKVLLISDPTTDKSSAALDVHIGSLSDPPNIAGLSHFL 81

>pdb|3E4A|A Chain A, Human Ide-Inhibitor Complex At 2.6 Angstrom Resolution Length = 1019

Iteration: 1
 Score = 65.5 bits (158), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 29/57 (50%), Positives = 40/57 (70%)
Query: 10  IIKPRTDKRQYRRLVLKNSLQVLLISDPDADKCAASMNVSVGAFCDPVGLEGLAHFL 66
           I K   DKR+YR L L N ++VLLISDP  DK +A+++V +G+  DP  + GL+HFL
Sbjct: 54  ITKSPEDKREYRGLELANGIKVLLISDPTTDKSSAALDVHIGSLSDPPNIAGLSHFL 110

>pdb|2WBY|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In Complex With Insulin Length = 990

Iteration: 1
 Score = 65.5 bits (158), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 29/57 (50%), Positives = 40/57 (70%)
Query: 10 IIKPRTDKRQYRRLVLKNSLQVLLISDPDADKCAASMNVSVGAFCDPVGLEGLAHFL 66
          I K   DKR+YR L L N ++VLLISDP  DK +A+++V +G+  DP  + GL+HFL
Sbjct: 25 ITKSPEDKREYRGLELANGIKVLLISDPTTDKSSAALDVHIGSLSDPPNIAGLSHFL 81

>pdb|3CWW|A Chain A, Crystal Structure Of Ide-Bradykinin Complex Length = 990

Iteration: 1
 Score = 65.5 bits (158), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 29/57 (50%), Positives = 40/57 (70%)
Query: 10 IIKPRTDKRQYRRLVLKNSLQVLLISDPDADKCAASMNVSVGAFCDPVGLEGLAHFL 66
          I K   DKR+YR L L N ++VLLISDP  DK +A+++V +G+  DP  + GL+HFL
Sbjct: 25 ITKSPEDKREYRGLELANGIKVLLISDPTTDKSSAALDVHIGSLSDPPNIAGLSHFL 81

>pdb|2JG4|A Chain A, Substrate-Free Ide Structure In Its Closed Conformation Length = 990

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 28/56 (50%), Positives = 39/56 (69%)
Query: 10 IIKPRTDKRQYRRLVLKNSLQVLLISDPDADKCAASMNVSVGAFCDPVGLEGLAHF 65
          I K   DKR+YR L L N ++VLLISDP  DK +A+++V +G+  DP  + GL+HF
Sbjct: 25 ITKSPEDKREYRGLELANGIKVLLISDPTTDKSSAALDVHIGSLSDPPNIAGLSHF 80

>pdb|2G47|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In Complex With Amyloid-Beta (1-40) Length = 990

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 28/56 (50%), Positives = 39/56 (69%)
Query: 10 IIKPRTDKRQYRRLVLKNSLQVLLISDPDADKCAASMNVSVGAFCDPVGLEGLAHF 65
          I K   DKR+YR L L N ++VLLISDP  DK +A+++V +G+  DP  + GL+HF
Sbjct: 25 ITKSPEDKREYRGLELANGIKVLLISDPTTDKSSAALDVHIGSLSDPPNIAGLSHF 80

>pdb|1Q2L|A Chain A, Crystal Structure Of Pitrilysin Length = 939

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 26/57 (45%), Positives = 36/57 (63%)
Query: 10 IIKPRTDKRQYRRLVLKNSLQVLLISDPDADKCAASMNVSVGAFCDPVGLEGLAHFL 66
          I K   D RQY+ + L N + VLL+SDP A K  +++ V VG+  DP   +GLAH+L
Sbjct: 11 IRKSDKDNRQYQAIRLDNGMVVLLVSDPQAVKSLSALVVPVGSLEDPEAYQGLAHYL 67
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	66
3cww_A	990	Insulysin, insulin-degrading enzyme, insulinase; A	3e-26
1q2l_A	939	Protease III; hydrolase; 2.20A {Escherichia coli s	2e-25
3amj_B	424	Zinc peptidase inactive subunit; alpha/beta, zinc	5e-06
3ami_A	445	Zinc peptidase; alpha/beta, zinc binding, hydrolas	8e-06
3eoq_A	406	Putative zinc protease; two similar domains of bet	4e-05
3go9_A	492	Insulinase family protease; IDP00573, structural g	1e-04
3hdi_A	421	Processing protease; CAGE structure, M16B peptidas	3e-04

>3cww_A Insulysin, insulin-degrading enzyme, insulinase; A-beta degrading enzyme, criptidase, kinins, hydrolase; 1.96A {Homo sapiens} PDB: 3ofi_A 2wc0_A 3h44_A 3n56_A 3n57_A 2wby_A 3qz2_A 3e4z_A 2wk3_A 3e4a_A* 2g47_A 2g48_A 2g49_A 2g54_A 2g56_A 2jbu_A 3e50_A 2jg4_A 3hgz_A 2yb3_A* ... Length = 990

 Score = 98.4 bits (244), Expect = 3e-26
 Identities = 30/65 (46%), Positives = 43/65 (66%)

Query: 2  AVGKDDVEIIKPRTDKRQYRRLVLKNSLQVLLISDPDADKCAASMNVSVGAFCDPVGLEG 61
          A+ +    I K   DKR+YR L L N ++VLLISDP  DK +A+++V +G+  DP  + G
Sbjct: 17 AIKRIGNHITKSPEDKREYRGLELANGIKVLLISDPTTDKSSAALDVHIGSLSDPPNIAG 76

Query: 62 LAHFL 66
          L+HFL
Sbjct: 77 LSHFL 81

>1q2l_A Protease III; hydrolase; 2.20A {Escherichia coli str} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1 Length = 939

 Score = 96.0 bits (238), Expect = 2e-25
 Identities = 26/58 (44%), Positives = 36/58 (62%)

Query: 9  EIIKPRTDKRQYRRLVLKNSLQVLLISDPDADKCAASMNVSVGAFCDPVGLEGLAHFL 66
           I K   D RQY+ + L N + VLL+SDP A K  +++ V VG+  DP   +GLAH+L
Sbjct: 10 TIRKSDKDNRQYQAIRLDNGMVVLLVSDPQAVKSLSALVVPVGSLEDPEAYQGLAHYL 67

>3amj_B Zinc peptidase inactive subunit; alpha/beta, zinc binding, hydrolase; 3.00A {Sphingomonas} Length = 424

 Score = 40.7 bits (96), Expect = 5e-06
 Identities = 6/48 (12%), Positives = 15/48 (31%)

Query: 19 QYRRLVLKNSLQVLLISDPDADKCAASMNVSVGAFCDPVGLEGLAHFL 66
          +       +  QV  + +         ++   G+  +P    G+A   
Sbjct: 3  KIEHWTAPSGAQVYYVENRTLPMLDVQVDFDAGSAREPADQVGVASMT 50

>3ami_A Zinc peptidase; alpha/beta, zinc binding, hydrolase; 2.40A {Sphingomonas} PDB: 3amj_C Length = 445

 Score = 40.0 bits (94), Expect = 8e-06
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 19 QYRRLVLKNSLQVLLISDPDADKCAASMNVSVGAFCDPVGLEGLAHFL 66
                L N L+V++  D  A      +   VG+  +  G  G+AH L
Sbjct: 6  STFETTLPNGLKVVVREDHRAPTLVHMVWYRVGSMDETTGTTGVAHAL 53

>3eoq_A Putative zinc protease; two similar domains of beta(2)-alpha(2)-beta(2)-alpha(5)- beta structure, hydrolase; 2.29A {Thermus thermophilus} Length = 406

 Score = 37.9 bits (89), Expect = 4e-05
 Identities = 15/47 (31%), Positives = 22/47 (46%)

Query: 20 YRRLVLKNSLQVLLISDPDADKCAASMNVSVGAFCDPVGLEGLAHFL 66
          +R   L+N L+V+    P A   A    V  GA  +     G++HFL
Sbjct: 2  FREAELRNGLRVIAEVVPGARSVALGYFVKTGARDETKEESGVSHFL 48

>3go9_A Insulinase family protease; IDP00573, structural genomics, for structural genomics of infectious diseases, csgid, HYDR; HET: MSE; 1.62A {Yersinia pestis} Length = 492

 Score = 36.8 bits (85), Expect = 1e-04
 Identities = 13/60 (21%), Positives = 23/60 (38%), Gaps = 5/60 (8%)

Query: 9  EIIKPRTDKRQYRRLVLKNSLQVLLISDPDADKCAASMN--VSVGAFCDPVGLEGLAHFL 66
          E ++P    +Q +   L N     L++ P        +   V+ G+  +     G AH L
Sbjct: 18 EALQPDPAWQQGK---LDNGFSWQLLATPQRPSDRIELRLIVNTGSLSENTQEVGFAHLL 74

>3hdi_A Processing protease; CAGE structure, M16B peptidase, metallopeptidase, peptidasome, protease, hydrolase; 2.70A {Bacillus halodurans c-125} Length = 421

 Score = 35.6 bits (83), Expect = 3e-04
 Identities = 8/47 (17%), Positives = 19/47 (40%)

Query: 20 YRRLVLKNSLQVLLISDPDADKCAASMNVSVGAFCDPVGLEGLAHFL 66
             + L N ++++          +  + V  G+  +     G++HFL
Sbjct: 2  INTMTLDNGVRIITEKMSTVRSVSIGIWVGTGSRYESAEENGISHFL 48

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	66
1q2l_A	939	Protease III; hydrolase; 2.20A {Escherichia coli s	99.56
3cww_A	990	Insulysin, insulin-degrading enzyme, insulinase; A	99.54
3eoq_A	406	Putative zinc protease; two similar domains of bet	99.35
3hdi_A	421	Processing protease; CAGE structure, M16B peptidas	99.31
3go9_A	492	Insulinase family protease; IDP00573, structural g	99.24
3ami_A	445	Zinc peptidase; alpha/beta, zinc binding, hydrolas	99.22
1hr6_A	475	Alpha-MPP, mitochondrial processing peptidase alph	99.16
3amj_B	424	Zinc peptidase inactive subunit; alpha/beta, zinc	99.11
1pp9_A	446	Ubiquinol-cytochrome C reductase complex core Pro	99.1
1hr6_B	443	Beta-MPP, mitochondrial processing peptidase beta	99.1
3gwb_A	434	Peptidase M16 inactive domain family protein; pept	99.05
3cx5_A	431	Cytochrome B-C1 complex subunit 1, mitochondrial;	99.02
1pp9_B	439	Ubiquinol-cytochrome C reductase complex core Pro	99.01
2fge_A	995	Atprep2;, zinc metalloprotease (insulinase family)	98.75
3d3y_A	425	Uncharacterized protein; APC29635, conserved prote	98.4
3s5m_A	1193	Falcilysin; M16 metalloprotease, peptidase, hydrol	98.26
3cx5_B	352	Cytochrome B-C1 complex subunit 2, mitochondrial;	97.51
1q2l_A	939	Protease III; hydrolase; 2.20A {Escherichia coli s	94.81
2fge_A	995	Atprep2;, zinc metalloprotease (insulinase family)	94.29
3cww_A	990	Insulysin, insulin-degrading enzyme, insulinase; A	88.19

>1q2l_A Protease III; hydrolase; 2.20A {Escherichia coli str} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1

Probab=99.56  E-value=1.9e-15  Score=108.78  Aligned_cols=60  Identities=43%  Similarity=0.696  Sum_probs=57.1

Q ss_pred             CcceeecCCCccceEEEEccCCCEEEEEEcCCCCeEEEEEEEcccCCCCCCCCCcceeeC
Q 037967            7 DVEIIKPRTDKRQYRRLVLKNSLQVLLISDPDADKCAASMNVSVGAFCDPVGLEGLAHFL   66 (66)
Q Consensus         7 ~~~~~k~~~d~~~~~~~~L~NGl~v~~~~~~~~~~~~~~~~v~~Gs~~ep~~~~GlAHfl   66 (66)
                      .+.++||+.|.+.|+..+|+|||+|++++++..+.+++++++++||++||++.+|+||||
T Consensus         8 ~~~~~~~~~d~~~~~~~~L~NGl~v~~~~~~~~~~~~~~l~v~~Gs~~e~~~~~GlAH~l   67 (939)
T 1q2l_A            8 QETIRKSDKDNRQYQAIRLDNGMVVLLVSDPQAVKSLSALVVPVGSLEDPEAYQGLAHYL   67 (939)
T ss_dssp             CSCCCCCTTCCCEEEEEEETTSCEEEEEECTTCSSEEEEEEESCCGGGCCGGGTTHHHHH
T ss_pred             cccCcCCCCCCcceEEEEecCCCEEEEEECCCCCceEEEEEeCccCCCCCCCCCchHHHH
Confidence            456899999999999999999999999999999999999999999999999999999985

>3cww_A Insulysin, insulin-degrading enzyme, insulinase; A-beta degrading enzyme, criptidase, kinins, hydrolase; 1.96A {Homo sapiens} PDB: 3ofi_A 2wc0_A 3h44_A 3n56_A 3n57_A 2wby_A 3qz2_A 3e4z_A 2wk3_A 3e4a_A* 2g47_A 2g48_A 2g49_A 2g54_A 2g56_A 2jbu_A 3e50_A 2jg4_A 3hgz_A 2yb3_A* ...

Probab=99.54  E-value=3.8e-15  Score=107.88  Aligned_cols=62  Identities=47%  Similarity=0.805  Sum_probs=58.8

Q ss_pred             CCCcceeecCCCccceEEEEccCCCEEEEEEcCCCCeEEEEEEEcccCCCCCCCCCcceeeC
Q 037967            5 KDDVEIIKPRTDKRQYRRLVLKNSLQVLLISDPDADKCAASMNVSVGAFCDPVGLEGLAHFL   66 (66)
Q Consensus         5 ~~~~~~~k~~~d~~~~~~~~L~NGl~v~~~~~~~~~~~~~~~~v~~Gs~~ep~~~~GlAHfl   66 (66)
                      +....++||..|++.|+..+|+|||+|++++++..+++++++++++||++||++.+|+||||
T Consensus        20 ~~~~~~~~~~~d~~~~~~~~L~NGl~v~~~~~~~~~~~~~~l~v~~Gs~~ep~~~~GlAH~l   81 (990)
T 3cww_A           20 RIGNHITKSPEDKREYRGLELANGIKVLLISDPTTDKSSAALDVHIGSLSDPPNIAGLSHFL   81 (990)
T ss_dssp             EECSCCCCCTTCCCEEEEEEETTCCEEEEEECTTCSEEEEEEEESCCGGGSCTTSTTHHHHH
T ss_pred             ccCCcccCCCCCCcceEEEEeCCCCEEEEEECCCCCcEEEEEEecccCCCCCCCCCChHHHH
Confidence            45567999999999999999999999999999999999999999999999999999999985

>3eoq_A Putative zinc protease; two similar domains of beta(2)-alpha(2)-beta(2)-alpha(5)- beta structure, hydrolase; 2.29A {Thermus thermophilus}

Probab=99.35  E-value=5.4e-13  Score=88.44  Aligned_cols=47  Identities=32%  Similarity=0.429  Sum_probs=45.2

Q ss_pred             eEEEEccCCCEEEEEEcCCCCeEEEEEEEcccCCCCCCCCCcceeeC
Q 037967           20 YRRLVLKNSLQVLLISDPDADKCAASMNVSVGAFCDPVGLEGLAHFL   66 (66)
Q Consensus        20 ~~~~~L~NGl~v~~~~~~~~~~~~~~~~v~~Gs~~ep~~~~GlAHfl   66 (66)
                      ++..+|+|||+|++++++..+.+++++++++||++||++.+|+||||
T Consensus         2 ~~~~~L~NGl~v~~~~~~~~~~~~~~l~~~~Gs~~e~~~~~G~ah~l   48 (406)
T 3eoq_A            2 FREAELRNGLRVIAEVVPGARSVALGYFVKTGARDETKEESGVSHFL   48 (406)
T ss_dssp             EEEEECTTSCEEEEEECTTCSCEEEEEEESCSGGGSCGGGTTHHHHH
T ss_pred             ceeEEcCCCCEEEEEECCCCCeEEEEEEEccccCCCCCCCCCHHHHH
Confidence            67899999999999999999999999999999999999999999985

>3hdi_A Processing protease; CAGE structure, M16B peptidase, metallopeptidase, peptidasome, protease, hydrolase; 2.70A {Bacillus halodurans c-125}

Probab=99.31  E-value=1.2e-12  Score=86.89  Aligned_cols=47  Identities=17%  Similarity=0.348  Sum_probs=45.2

Q ss_pred             eEEEEccCCCEEEEEEcCCCCeEEEEEEEcccCCCCCCCCCcceeeC
Q 037967           20 YRRLVLKNSLQVLLISDPDADKCAASMNVSVGAFCDPVGLEGLAHFL   66 (66)
Q Consensus        20 ~~~~~L~NGl~v~~~~~~~~~~~~~~~~v~~Gs~~ep~~~~GlAHfl   66 (66)
                      |+..+|+||++|++++++..+.+++.+++++||++||++.+|+|||+
T Consensus         2 ~~~~~L~NGl~v~~~~~~~~~~~~~~l~~~~Gs~~e~~~~~G~ah~l   48 (421)
T 3hdi_A            2 INTMTLDNGVRIITEKMSTVRSVSIGIWVGTGSRYESAEENGISHFL   48 (421)
T ss_dssp             CEEEECTTSCEEEEEECTTCSEEEEEEEESCCGGGCCGGGTTHHHHH
T ss_pred             ceEEEcCCCCEEEEEECCCCCEEEEEEEEccccCCCCCCCCcHHHHH
Confidence            78899999999999999999999999999999999999999999985

>3go9_A Insulinase family protease; IDP00573, structural genomics, for structural genomics of infectious diseases, csgid, HYDR; HET: MSE; 1.62A {Yersinia pestis}

Probab=99.24  E-value=4.8e-12  Score=86.94  Aligned_cols=50  Identities=22%  Similarity=0.408  Sum_probs=45.5

Q ss_pred             ccceEEEEccCCCEEEEEEcCCC--CeEEEEEEEcccCCCCCCCCCcceeeC
Q 037967           17 KRQYRRLVLKNSLQVLLISDPDA--DKCAASMNVSVGAFCDPVGLEGLAHFL   66 (66)
Q Consensus        17 ~~~~~~~~L~NGl~v~~~~~~~~--~~~~~~~~v~~Gs~~ep~~~~GlAHfl   66 (66)
                      ++.++..+|+|||+|++++++..  +.+++.+++++||++|++++.|+|||+
T Consensus        23 dp~~~~~~L~NGl~v~~~~~~~~~~~~v~~~l~~~~Gs~~e~~~~~Glahll   74 (492)
T 3go9_A           23 DPAWQQGKLDNGFSWQLLATPQRPSDRIELRLIVNTGSLSENTQEVGFAHLL   74 (492)
T ss_dssp             CTTEEEEECTTSCEEEEEECTTSTTSCEEEEEEESCCGGGCCGGGTTHHHHH
T ss_pred             CCCeEEEECCCCCEEEEEECCCCCCCeEEEEEEEecccCCCCCCCcCHHHHH
Confidence            46799999999999999998754  579999999999999999999999985

>3ami_A Zinc peptidase; alpha/beta, zinc binding, hydrolase; 2.40A {Sphingomonas} PDB: 3amj_C

Probab=99.22  E-value=1.1e-11  Score=82.97  Aligned_cols=49  Identities=27%  Similarity=0.312  Sum_probs=46.3

Q ss_pred             cceEEEEccCCCEEEEEEcCCCCeEEEEEEEcccCCCCCCCCCcceeeC
Q 037967           18 RQYRRLVLKNSLQVLLISDPDADKCAASMNVSVGAFCDPVGLEGLAHFL   66 (66)
Q Consensus        18 ~~~~~~~L~NGl~v~~~~~~~~~~~~~~~~v~~Gs~~ep~~~~GlAHfl   66 (66)
                      ..++..+|+||++|++++++..+.+++.+++++||++||++..|+|||+
T Consensus         5 ~~~~~~~L~NGl~v~~~~~~~~~~v~~~~~~~~Gs~~e~~~~~Glah~l   53 (445)
T 3ami_A            5 ASTFETTLPNGLKVVVREDHRAPTLVHMVWYRVGSMDETTGTTGVAHAL   53 (445)
T ss_dssp             GGEEEEECTTSCEEEEEECTTSSEEEEEEEESCCGGGCCTTCTTHHHHH
T ss_pred             cCcEEEECCCCCEEEEEECCCCCeEEEEEEEeeccCCCCCCCccHHHHH
Confidence            4688899999999999999999999999999999999999999999985

>1hr6_A Alpha-MPP, mitochondrial processing peptidase alpha subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_A 1hr8_A* 1hr9_A*

Probab=99.16  E-value=2e-11  Score=82.66  Aligned_cols=49  Identities=22%  Similarity=0.362  Sum_probs=44.8

Q ss_pred             ccceEEEEccCCCEEEEEEcCCCCeEEEEEEEcccCCCCCCCCCcceeeC
Q 037967           17 KRQYRRLVLKNSLQVLLISDPDADKCAASMNVSVGAFCDPVGLEGLAHFL   66 (66)
Q Consensus        17 ~~~~~~~~L~NGl~v~~~~~~~~~~~~~~~~v~~Gs~~ep~~~~GlAHfl   66 (66)
                      ++.++..+|+||++|++.+.+. +.+++.+++++||++|+++..|+||||
T Consensus         3 ~~~~~~~~L~NGl~v~~~~~~~-~~~~~~l~~~~Gs~~e~~~~~Glah~l   51 (475)
T 1hr6_A            3 TDNFKLSSLANGLKVATSNTPG-HFSALGLYIDAGSRFEGRNLKGCTHIL   51 (475)
T ss_dssp             TTCCEEEECTTSCEEEEESCCC-SSEEEEEEESCCGGGCTTTTTTHHHHH
T ss_pred             CCCceEEECCCCCEEEEEeCCC-CEEEEEEEEccccCCCCCCCCcHHHHH
Confidence            4678899999999999988774 899999999999999999999999985

>3amj_B Zinc peptidase inactive subunit; alpha/beta, zinc binding, hydrolase; 3.00A {Sphingomonas}

Probab=99.11  E-value=7.1e-11  Score=78.07  Aligned_cols=48  Identities=13%  Similarity=0.216  Sum_probs=45.5

Q ss_pred             ceEEEEccCCCEEEEEEcCCCCeEEEEEEEcccCCCCCCCCCcceeeC
Q 037967           19 QYRRLVLKNSLQVLLISDPDADKCAASMNVSVGAFCDPVGLEGLAHFL   66 (66)
Q Consensus        19 ~~~~~~L~NGl~v~~~~~~~~~~~~~~~~v~~Gs~~ep~~~~GlAHfl   66 (66)
                      .++..+|+||++|++.+++..+.+++.+++++|+.+||++..|+|||+
T Consensus         3 ~~~~~~L~NGl~v~~~~~~~~~~~~~~l~~~~Gs~~e~~~~~g~ahll   50 (424)
T 3amj_B            3 KIEHWTAPSGAQVYYVENRTLPMLDVQVDFDAGSAREPADQVGVASMT   50 (424)
T ss_dssp             CCEEEECTTSCEEEEEECCSSSEEEEEEEESCSGGGSCTTSTTHHHHH
T ss_pred             ccEEEECCCCcEEEEEECCCCCEEEEEEEEecCCccCCCccchHHHHH
Confidence            478899999999999999999999999999999999999999999985

>1pp9_A Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_A* 1be3_A* 1l0n_A* 1ntk_A* 1ntm_A* 1ntz_A* 1nu1_A* 1l0l_A* 1ppj_A* 1sqq_A* 1sqv_A* 1sqx_A* 2a06_A* 2fyu_A* 2ybb_A* 1sqb_A* 1sqp_A* 1qcr_A* 1bcc_A* 2bcc_A* ...

Probab=99.10  E-value=5.7e-11  Score=79.50  Aligned_cols=51  Identities=16%  Similarity=0.233  Sum_probs=46.0

Q ss_pred             CCccceEEEEccCCCEEEEEEcCCCCeEEEEEEEcccCCCCCCCCCcceeeC
Q 037967           15 TDKRQYRRLVLKNSLQVLLISDPDADKCAASMNVSVGAFCDPVGLEGLAHFL   66 (66)
Q Consensus        15 ~d~~~~~~~~L~NGl~v~~~~~~~~~~~~~~~~v~~Gs~~ep~~~~GlAHfl   66 (66)
                      ...+.++..+|+||++|++.+.+. +.+++.+++++|+++||++..|+|||+
T Consensus         9 ~~~~~~~~~~L~NGl~v~~~~~~~-~~~~~~l~~~~Gs~~e~~~~~Glahll   59 (446)
T 1pp9_A            9 QSVPETQVSQLDNGLRVASEQSSQ-PTCTVGVWIDAGSRYESEKNNGAGYFV   59 (446)
T ss_dssp             TTSCCCEEEECTTCCEEEEEECSC-SEEEEEEEESCSGGGCCTTTTTHHHHH
T ss_pred             ccccCceEEECCCCCEEEEEeCCC-CEEEEEEEEccccCCCCCCCCcHHHHH
Confidence            334678899999999999998885 799999999999999999999999985

>1hr6_B Beta-MPP, mitochondrial processing peptidase beta subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_B 1hr8_B* 1hr9_B*

Probab=99.10  E-value=7.6e-11  Score=78.42  Aligned_cols=49  Identities=27%  Similarity=0.331  Sum_probs=45.6

Q ss_pred             cceEEEEccCCCEEEEEEcCCCCeEEEEEEEcccCCCCCCCCCcceeeC
Q 037967           18 RQYRRLVLKNSLQVLLISDPDADKCAASMNVSVGAFCDPVGLEGLAHFL   66 (66)
Q Consensus        18 ~~~~~~~L~NGl~v~~~~~~~~~~~~~~~~v~~Gs~~ep~~~~GlAHfl   66 (66)
                      +.++..+|+||++|++.+++..+.+++.+++++|+++||++..|+|||+
T Consensus         5 ~~~~~~~L~NGl~v~~~~~~~~~~~~~~~~~~~Gs~~e~~~~~G~ah~l   53 (443)
T 1hr6_B            5 PGTRTSKLPNGLTIATEYIPNTSSATVGIFVDAGSRAENVKNNGTAHFL   53 (443)
T ss_dssp             CCCEEEECTTSCEEEEEECSSCSEEEEEEEEECSGGGCCTTTTTHHHHH
T ss_pred             CCceEEECCCCCEEEEEECCCCCEEEEEEEEccccCCCCCCCCcHHHHH
Confidence            5678899999999999999987799999999999999999999999985

>3gwb_A Peptidase M16 inactive domain family protein; peptidase M16 family, PFL_5859, structural genomics, PSI-2, structure initiative; 1.90A {Pseudomonas fluorescens}

Probab=99.05  E-value=1.7e-10  Score=76.29  Aligned_cols=52  Identities=12%  Similarity=0.123  Sum_probs=45.7

Q ss_pred             CCCccceEEEEccCCCEEEEEEcCCCCeEEEEEEEcccCCCCCCCCCcceeeC
Q 037967           14 RTDKRQYRRLVLKNSLQVLLISDPDADKCAASMNVSVGAFCDPVGLEGLAHFL   66 (66)
Q Consensus        14 ~~d~~~~~~~~L~NGl~v~~~~~~~~~~~~~~~~v~~Gs~~ep~~~~GlAHfl   66 (66)
                      ....+.++..+|+||++|++.+++..+++++.+++++|+.+| ++..|+|||+
T Consensus         8 ~~~~~~~~~~~L~NGl~v~~~~~~~~~~~~~~~~~~~Gs~~e-~~~~g~a~ll   59 (434)
T 3gwb_A            8 SHRNLNVQTWSTAEGAKVLFVEARELPMFDLRLIFAAGSSQD-GNAPGVALLT   59 (434)
T ss_dssp             ----CCCEEEECTTCCEEEEEECCSSSEEEEEEEESCSGGGC-TTSTTHHHHH
T ss_pred             cccCCCCEEEEcCCCeEEEEEECCCCCEEEEEEEEecccccC-CcchhHHHHH
Confidence            334567899999999999999999999999999999999999 8999999985

>3cx5_A Cytochrome B-C1 complex subunit 1, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1p84_A* 2ibz_A* 1kb9_A* 3cxh_A* 1ezv_A* 1kyo_A*

Probab=99.02  E-value=1.4e-10  Score=76.47  Aligned_cols=45  Identities=18%  Similarity=0.208  Sum_probs=42.7

Q ss_pred             EEEccCCCEEEEEEcCCCCeEEEEEEEcccCCCCCCCCCcceeeC
Q 037967           22 RLVLKNSLQVLLISDPDADKCAASMNVSVGAFCDPVGLEGLAHFL   66 (66)
Q Consensus        22 ~~~L~NGl~v~~~~~~~~~~~~~~~~v~~Gs~~ep~~~~GlAHfl   66 (66)
                      ..+|+||++|++.+++..+.+++.+++++|+++||++..|+|||+
T Consensus         3 ~~~L~NGl~v~~~~~~~~~~~~~~l~~~~Gs~~e~~~~~g~ahll   47 (431)
T 3cx5_A            3 VTQLSNGIVVATEHNPSAHTASVGVVFGSGAANENPYNNGVSNLW   47 (431)
T ss_dssp             CEEEESSSEEEEEECTTCSSEEEEEEESCCGGGSCTTTTTHHHHH
T ss_pred             EEECCCCCEEEEEECCCCCEEEEEEEEecCccCCCCCCcchHHHH
Confidence            568999999999999999999999999999999999999999985

>1pp9_B Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_B* 1be3_B* 1l0n_B* 1ntk_B* 1ntm_B* 1ntz_B* 1nu1_B* 1l0l_B* 1ppj_B* 1sqq_B* 1sqv_B* 1sqx_B* 2a06_B* 2fyu_B* 2ybb_B* 1sqb_B* 1sqp_B* 1qcr_B* 2bcc_B* 3bcc_B* ...

Probab=99.01  E-value=3.1e-10  Score=75.16  Aligned_cols=51  Identities=16%  Similarity=0.196  Sum_probs=46.6

Q ss_pred             CCccceEEEEccCCCEEEEEEcCCCCeEEEEEEEcccCCCCCCCCCcceeeC
Q 037967           15 TDKRQYRRLVLKNSLQVLLISDPDADKCAASMNVSVGAFCDPVGLEGLAHFL   66 (66)
Q Consensus        15 ~d~~~~~~~~L~NGl~v~~~~~~~~~~~~~~~~v~~Gs~~ep~~~~GlAHfl   66 (66)
                      .+...++..+|+||++|++.++ ..+.+++.+++++|+++|+++..|+|||+
T Consensus        19 ~~~~~~~~~~L~nGl~v~~~~~-~~~~~~~~~~~~~Gs~~e~~~~~g~a~ll   69 (439)
T 1pp9_B           19 PHPQDLEFTRLPNGLVIASLEN-YAPASRIGLFIKAGSRYENSNNLGTSHLL   69 (439)
T ss_dssp             C-CCCCEEEECTTSCEEEEECC-CCSEEEEEEEESCSGGGCCTTSTTHHHHH
T ss_pred             ccCCCceEEECCCCcEEEEEeC-CCceEEEEEEEeccccCCCCCcCcHHHHH
Confidence            3567899999999999999999 78999999999999999999999999985

>2fge_A Atprep2;, zinc metalloprotease (insulinase family); peptidasome, protease-peptide complex, hydrolase, plant protein; 2.10A {Arabidopsis thaliana} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1

Probab=98.75  E-value=5.2e-09  Score=76.19  Aligned_cols=51  Identities=20%  Similarity=0.209  Sum_probs=44.7

Q ss_pred             eecCCCccceEEEEccCCCEEEEEEcCCCCeEEEEEEEcccCCCCCCCCCcceeeC
Q 037967           11 IKPRTDKRQYRRLVLKNSLQVLLISDPDADKCAASMNVSVGAFCDPVGLEGLAHFL   66 (66)
Q Consensus        11 ~k~~~d~~~~~~~~L~NGl~v~~~~~~~~~~~~~~~~v~~Gs~~ep~~~~GlAHfl   66 (66)
                      ..+..+.+.|++.+|+|||+|+++++++.+.     ++.+|+++||++.+|+||||
T Consensus        29 ~~~~~~~~~~~~~~l~nGl~v~~~~~~~~~~-----~~~vg~~~e~~~~~GlAH~l   79 (995)
T 2fge_A           29 FISECKSKAILFKHKKTGCEVMSVSNEDENK-----VFGVVFRTPPKDSTGIPHIL   79 (995)
T ss_dssp             EETTTTEEEEEEEETTTCCEEEEEECSCSSE-----EEEEEEECCCSSSSCHHHHH
T ss_pred             ecccccceEEEEEECCCCCEEEEEEcCCCcc-----EEEEEeCCCCcCCCChHHHH
Confidence            4566777889999999999999999998776     36789999999999999985

>3d3y_A Uncharacterized protein; APC29635, conserved protein, enterococcus faecalis V583, STR genomics, PSI-2, protein structure initiative; 1.95A {Enterococcus faecalis}

Probab=98.40  E-value=1.1e-07  Score=62.31  Aligned_cols=41  Identities=7%  Similarity=0.045  Sum_probs=37.7

Q ss_pred             EEccCCCEEEEEEcCCCCeEEEEEEEcccCCCCCCCCCcceeeC
Q 037967           23 LVLKNSLQVLLISDPDADKCAASMNVSVGAFCDPVGLEGLAHFL   66 (66)
Q Consensus        23 ~~L~NGl~v~~~~~~~~~~~~~~~~v~~Gs~~ep~~~~GlAHfl   66 (66)
                      ++|+||++|++.+++..+.+++.+++++|+.+|+   .|+|||+
T Consensus         6 ~~L~nG~~v~~~~~~~~~~~~~~~~~~~g~~~e~---~g~a~ll   46 (425)
T 3d3y_A            6 VQLVKGVNLHVIPTEKYKTVRLLVRFNTRLNHET---ITKRTLL   46 (425)
T ss_dssp             EEEETTEEEEEEECSSCSEEEEEEEEEEECCTTT---HHHHHHH
T ss_pred             eeccCCcEEEEEecCccceEEEEEEEeCCCCccc---hhHHHHH
Confidence            7899999999999999999999999999998776   6999984

>3s5m_A Falcilysin; M16 metalloprotease, peptidase, hydrolase; 1.55A {Plasmodium falciparum} PDB: 3s5i_A 3s5k_A 3s5h_A

Probab=98.26  E-value=3.5e-07  Score=69.32  Aligned_cols=54  Identities=13%  Similarity=0.009  Sum_probs=42.7

Q ss_pred             eecCCCccceEEEEccCCCEEEEEEcCCCCeEEEEEEEcccCCCCCCCCCcceeeC
Q 037967           11 IKPRTDKRQYRRLVLKNSLQVLLISDPDADKCAASMNVSVGAFCDPVGLEGLAHFL   66 (66)
Q Consensus        11 ~k~~~d~~~~~~~~L~NGl~v~~~~~~~~~~~~~~~~v~~Gs~~ep~~~~GlAHfl   66 (66)
                      .-|..+.+.|++..|+||++|+++++++.+.+..  ++.+|+.+||++.+|+||||
T Consensus        78 ~~p~~~~~~~~~~~l~nGl~vl~i~~~~~~~~~~--~f~vg~~tep~~~~GvAH~l  131 (1193)
T 3s5m_A           78 YNEEFKMTYTVYQHKKAKTQVISLGTNDPLDVEQ--AFAFYVKTLTHSGKGIPHIL  131 (1193)
T ss_dssp             EETTTTEEEEEEEETTTCCEEEEEEECCTTCCCE--EEEEEEECCCSSSSCHHHHH
T ss_pred             cCCCccccceEEEECCCCCEEEEEECCCCCeEEE--EEEEEECCCCCCCchHHHHH
Confidence            3455566788999999999999999998754333  34567788999999999985

>3cx5_B Cytochrome B-C1 complex subunit 2, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1kb9_B* 1kyo_B* 1p84_B* 2ibz_B* 1ezv_B* 3cxh_B*

Probab=97.51  E-value=5.8e-05  Score=48.67  Aligned_cols=35  Identities=26%  Similarity=0.345  Sum_probs=29.0

Q ss_pred             CEEEEEEcCCCCeEEEEEEEcccCCCCCCCCCcceeeC
Q 037967           29 LQVLLISDPDADKCAASMNVSVGAFCDPVGLEGLAHFL   66 (66)
Q Consensus        29 l~v~~~~~~~~~~~~~~~~v~~Gs~~ep~~~~GlAHfl   66 (66)
                      |+|+. +++..+.+++++++++||++|  +..|+|||+
T Consensus         1 l~v~~-~~~~~~~v~~~~~~~~Gs~~e--~~~G~ah~l   35 (352)
T 3cx5_B            1 LTVSA-RDAPTKISTLAVKVHGGSRYA--TKDGVAHLL   35 (352)
T ss_dssp             CEEEE-ECCSCSEEEEEEEESCSGGGC--SSTTHHHHH
T ss_pred             CEEEE-eeCCCceEEEEEEEeeeccCC--CcccHHHHH
Confidence            56776 455578999999999999997  479999985

>1q2l_A Protease III; hydrolase; 2.20A {Escherichia coli str} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1

Probab=94.81  E-value=0.012  Score=42.50  Aligned_cols=45  Identities=13%  Similarity=0.067  Sum_probs=37.6

Q ss_pred             EEEEccCCCEEEEEEcCCC---CeEEEEEEEcccCCCCCCCCCcceee
Q 037967           21 RRLVLKNSLQVLLISDPDA---DKCAASMNVSVGAFCDPVGLEGLAHF   65 (66)
Q Consensus        21 ~~~~L~NGl~v~~~~~~~~---~~~~~~~~v~~Gs~~ep~~~~GlAHf   65 (66)
                      ..++|.||++|++.+++..   |+..+.+.+.+|...+++...|++++
T Consensus       501 ~~~~l~ng~~v~~~~~~~f~~pp~~~i~l~~~~~~~~~~~~~~~~~~l  548 (939)
T 1q2l_A          501 ELIVDESNLRVVYAPSRYFASEPKADVSLILRNPKAMDSARNQVMFAL  548 (939)
T ss_dssp             EEEEEETTEEEEEECCSSCTTSSEEEEEEEEECGGGGSSHHHHHHHHH
T ss_pred             EEEEECCCceEeecCCCccCCCCcEEEEEEEeCCcccCCHHHHHHHHH
Confidence            4678999999999999864   39999999999998887766677765

>2fge_A Atprep2;, zinc metalloprotease (insulinase family); peptidasome, protease-peptide complex, hydrolase, plant protein; 2.10A {Arabidopsis thaliana} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1

Probab=94.29  E-value=0.062  Score=39.27  Aligned_cols=41  Identities=17%  Similarity=0.079  Sum_probs=32.9

Q ss_pred             EEccCCCEEEEEEcCCCCeEEEEEEEcccCCCCCCCCCcceee
Q 037967           23 LVLKNSLQVLLISDPDADKCAASMNVSVGAFCDPVGLEGLAHF   65 (66)
Q Consensus        23 ~~L~NGl~v~~~~~~~~~~~~~~~~v~~Gs~~ep~~~~GlAHf   65 (66)
                      ..+.||++|++.+++..+.+.+.+.++.|++  +++..|++++
T Consensus       556 ~~~~nG~~v~~~~~~~~~~v~~~~~~~~~~~--~~~~~~~~~l  596 (995)
T 2fge_A          556 VGDINGVKVLRHDLFTNDIIYTEVVFDIGSL--KHELLPLVPL  596 (995)
T ss_dssp             EEESSSSEEEEEECCCSSEEEEEEEEECTTS--CTTTGGGHHH
T ss_pred             eeecCCceEEEEecCCCCeEEEEEEeeCCCC--CHHHhhhHHH
Confidence            3458999999999998899999999999987  4455555544

>3cww_A Insulysin, insulin-degrading enzyme, insulinase; A-beta degrading enzyme, criptidase, kinins, hydrolase; 1.96A {Homo sapiens} PDB: 3ofi_A 2wc0_A 3h44_A 3n56_A 3n57_A 2wby_A 3qz2_A 3e4z_A 2wk3_A 3e4a_A* 2g47_A 2g48_A 2g49_A 2g54_A 2g56_A 2jbu_A 3e50_A 2jg4_A 3hgz_A 2yb3_A* ...

Probab=88.19  E-value=0.19  Score=36.57  Aligned_cols=45  Identities=7%  Similarity=-0.108  Sum_probs=35.0

Q ss_pred             EEEEccCCCEEEEEEcCC--CCeEEEEEEEcccCCCCCCCCCcceee
Q 037967           21 RRLVLKNSLQVLLISDPD--ADKCAASMNVSVGAFCDPVGLEGLAHF   65 (66)
Q Consensus        21 ~~~~L~NGl~v~~~~~~~--~~~~~~~~~v~~Gs~~ep~~~~GlAHf   65 (66)
                      ...++.||++|++.+++.  .|...+.+.+..+...+++...|++++
T Consensus       520 ~~~~~~ng~~v~~~~~~~f~~P~~~i~~~~~~~~~~~~~~~~~~~~L  566 (990)
T 3cww_A          520 ALIKDTAMSKLWFKQDDKFFLPKANLNFEFFSPFAYVDPLHSNMAYL  566 (990)
T ss_dssp             EEEEECSSEEEEEEECSSCCCSEEEEEEEEECGGGTSSHHHHHHHHH
T ss_pred             eeeecCCCceEeeccCCccCCCcEEEEEEEeCCCCCCCHHHHHHHHH
Confidence            457789999999999887  458888888888777777665566554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	66
d1q2la4	240	d.185.1.1 (A:24-263) Protease III {Escherichia col	2e-15
d1hr6b1	222	d.185.1.1 (B:24-245) Mitochondrial processing pept	9e-11
d3cx5a1	213	d.185.1.1 (A:27-239) Cytochrome bc1 core subunit 1	2e-08
d1hr6a1	220	d.185.1.1 (A:14-233) Mitochondrial processing pept	4e-08
d1ppja1	232	d.185.1.1 (A:2-233) Cytochrome bc1 core subunit 1	2e-06
d1ppjb1	219	d.185.1.1 (B:17-235) Cytochrome bc1 core subunit 2	2e-06
d3cx5b1	202	d.185.1.1 (B:17-218) Cytochrome bc1 core subunit 2	1e-04
d2fgea4	257	d.185.1.1 (A:15-271) Presequence protease 1, PREP1	6e-04
d3lkfa_	299	f.6.1.1 (A:) Leukocidin F (HlgB) {Staphylococcus a	0.003

>d1q2la4 d.185.1.1 (A:24-263) Protease III {Escherichia coli [TaxId: 562]} Length = 240

class: Alpha and beta proteins (a+b)
fold: LuxS/MPP-like metallohydrolase
superfamily: LuxS/MPP-like metallohydrolase
family: MPP-like
domain: Protease III
species: Escherichia coli [TaxId: 562]

 Score = 65.2 bits (157), Expect = 2e-15
 Identities = 25/56 (44%), Positives = 35/56 (62%)

Query: 10 IIKPRTDKRQYRRLVLKNSLQVLLISDPDADKCAASMNVSVGAFCDPVGLEGLAHF 65
          I K   D RQY+ + L N + VLL+SDP A K  +++ V VG+  DP   +GLAH+
Sbjct: 11 IRKSDKDNRQYQAIRLDNGMVVLLVSDPQAVKSLSALVVPVGSLEDPEAYQGLAHY 66

>d1hr6b1 d.185.1.1 (B:24-245) Mitochondrial processing peptidase (MPP) beta chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 222

class: Alpha and beta proteins (a+b)
fold: LuxS/MPP-like metallohydrolase
superfamily: LuxS/MPP-like metallohydrolase
family: MPP-like
domain: Mitochondrial processing peptidase (MPP) beta chain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 52.4 bits (124), Expect = 9e-11
 Identities = 12/47 (25%), Positives = 17/47 (36%)

Query: 19 QYRRLVLKNSLQVLLISDPDADKCAASMNVSVGAFCDPVGLEGLAHF 65
            R   L N L +     P+       + V  G+  + V   G AHF
Sbjct: 2  GTRTSKLPNGLTIATEYIPNTSSATVGIFVDAGSRAENVKNNGTAHF 48

>d3cx5a1 d.185.1.1 (A:27-239) Cytochrome bc1 core subunit 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 213

class: Alpha and beta proteins (a+b)
fold: LuxS/MPP-like metallohydrolase
superfamily: LuxS/MPP-like metallohydrolase
family: MPP-like
domain: Cytochrome bc1 core subunit 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.2 bits (108), Expect = 2e-08
 Identities = 8/41 (19%), Positives = 16/41 (39%)

Query: 25 LKNSLQVLLISDPDADKCAASMNVSVGAFCDPVGLEGLAHF 65
          L N + V    +P A   +  +    GA  +     G+++ 
Sbjct: 6  LSNGIVVATEHNPSAHTASVGVVFGSGAANENPYNNGVSNL 46

>d1hr6a1 d.185.1.1 (A:14-233) Mitochondrial processing peptidase (MPP) alpha chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 220

class: Alpha and beta proteins (a+b)
fold: LuxS/MPP-like metallohydrolase
superfamily: LuxS/MPP-like metallohydrolase
family: MPP-like
domain: Mitochondrial processing peptidase (MPP) alpha chain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.1 bits (105), Expect = 4e-08
 Identities = 14/53 (26%), Positives = 23/53 (43%), Gaps = 3/53 (5%)

Query: 14 RTDKRQYRRLVLKNSLQVLLISDPDADKCAASMNVSVGAFCDPVGLEGLAHFL 66
          RTD   ++   L N L+V   + P     A  + +  G+  +   L+G  H L
Sbjct: 2  RTDN--FKLSSLANGLKVATSNTP-GHFSALGLYIDAGSRFEGRNLKGCTHIL 51

>d1ppja1 d.185.1.1 (A:2-233) Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [TaxId: 9913]} Length = 232

class: Alpha and beta proteins (a+b)
fold: LuxS/MPP-like metallohydrolase
superfamily: LuxS/MPP-like metallohydrolase
family: MPP-like
domain: Cytochrome bc1 core subunit 1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 40.8 bits (94), Expect = 2e-06
 Identities = 8/47 (17%), Positives = 16/47 (34%), Gaps = 1/47 (2%)

Query: 19 QYRRLVLKNSLQVLLISDPDADKCAASMNVSVGAFCDPVGLEGLAHF 65
          + +   L N L+V          C   + +  G+  +     G  +F
Sbjct: 12 ETQVSQLDNGLRVASE-QSSQPTCTVGVWIDAGSRYESEKNNGAGYF 57

>d1ppjb1 d.185.1.1 (B:17-235) Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [TaxId: 9913]} Length = 219

class: Alpha and beta proteins (a+b)
fold: LuxS/MPP-like metallohydrolase
superfamily: LuxS/MPP-like metallohydrolase
family: MPP-like
domain: Cytochrome bc1 core subunit 2
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 40.3 bits (93), Expect = 2e-06
 Identities = 8/51 (15%), Positives = 17/51 (33%), Gaps = 1/51 (1%)

Query: 16 DKRQYRRLVLKNSLQVLLISDPDADKCAASMNVSVGAFCDPVGLEGLAHFL 66
            +      L N L +  + +  A      + +  G+  +     G +H L
Sbjct: 4  HPQDLEFTRLPNGLVIASLENY-APASRIGLFIKAGSRYENSNNLGTSHLL 53

>d3cx5b1 d.185.1.1 (B:17-218) Cytochrome bc1 core subunit 2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 202

class: Alpha and beta proteins (a+b)
fold: LuxS/MPP-like metallohydrolase
superfamily: LuxS/MPP-like metallohydrolase
family: MPP-like
domain: Cytochrome bc1 core subunit 2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 35.8 bits (81), Expect = 1e-04
 Identities = 10/35 (28%), Positives = 16/35 (45%)

Query: 32 LLISDPDADKCAASMNVSVGAFCDPVGLEGLAHFL 66
          L +S  DA    +++ V V         +G+AH L
Sbjct: 1  LTVSARDAPTKISTLAVKVHGGSRYATKDGVAHLL 35

>d2fgea4 d.185.1.1 (A:15-271) Presequence protease 1, PREP1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 257

class: Alpha and beta proteins (a+b)
fold: LuxS/MPP-like metallohydrolase
superfamily: LuxS/MPP-like metallohydrolase
family: MPP-like
domain: Presequence protease 1, PREP1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 33.7 bits (76), Expect = 6e-04
 Identities = 10/41 (24%), Positives = 16/41 (39%), Gaps = 5/41 (12%)

Query: 26 KNSLQVLLISDPDADKCAASMNVSVGAFCDPVGLEGLAHFL 66
          K   +V+ +S+ D +K        V     P    G+ H L
Sbjct: 30 KTGCEVMSVSNEDENKV-----FGVVFRTPPKDSTGIPHIL 65

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	66
d1q2la4	240	Protease III {Escherichia coli [TaxId: 562]}	99.65
d3cx5a1	213	Cytochrome bc1 core subunit 1 {Baker's yeast (Sacc	99.42
d1hr6b1	222	Mitochondrial processing peptidase (MPP) beta chai	99.41
d1ppjb1	219	Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [T	99.33
d1ppja1	232	Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [T	99.28
d1hr6a1	220	Mitochondrial processing peptidase (MPP) alpha cha	99.21
d2fgea4	257	Presequence protease 1, PREP1 {Thale cress (Arabid	98.32
d3cx5b1	202	Cytochrome bc1 core subunit 2 {Baker's yeast (Sacc	98.12
d1q2la1	229	Protease III {Escherichia coli [TaxId: 562]}	97.95

>d1q2la4 d.185.1.1 (A:24-263) Protease III {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: LuxS/MPP-like metallohydrolase
superfamily: LuxS/MPP-like metallohydrolase
family: MPP-like
domain: Protease III
species: Escherichia coli [TaxId: 562]

Probab=99.65  E-value=5.5e-17  Score=100.79  Aligned_cols=60  Identities=43%  Similarity=0.696  Sum_probs=56.5

Q ss_pred             CcceeecCCCccceEEEEccCCCEEEEEEcCCCCeEEEEEEEcccCCCCCCCCCcceeeC
Q 037967            7 DVEIIKPRTDKRQYRRLVLKNSLQVLLISDPDADKCAASMNVSVGAFCDPVGLEGLAHFL   66 (66)
Q Consensus         7 ~~~~~k~~~d~~~~~~~~L~NGl~v~~~~~~~~~~~~~~~~v~~Gs~~ep~~~~GlAHfl   66 (66)
                      ...+.|+..|.++|+.++|+|||+|++++++..+.+++++++++||++||++..|+|||+
T Consensus         8 ~~~~~k~~~d~~~~~~~~L~NGl~V~~~~~~~~~~v~~~l~~~~Gs~~e~~~~~Gla~ll   67 (240)
T d1q2la4           8 QETIRKSDKDNRQYQAIRLDNGMVVLLVSDPQAVKSLSALVVPVGSLEDPEAYQGLAHYL   67 (240)
T ss_dssp             CSCCCCCTTCCCEEEEEEETTSCEEEEEECTTCSSEEEEEEESCCGGGCCGGGTTHHHHH
T ss_pred             cccCCCCCCCCcceEEEEcCCCCEEEEEECCCCCEEEEEEEEeCCccccccchHHHHHHH
Confidence            356789999999999999999999999999999999999999999999999999999985

>d3cx5a1 d.185.1.1 (A:27-239) Cytochrome bc1 core subunit 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: LuxS/MPP-like metallohydrolase
superfamily: LuxS/MPP-like metallohydrolase
family: MPP-like
domain: Cytochrome bc1 core subunit 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.42  E-value=3.5e-14  Score=86.96  Aligned_cols=45  Identities=18%  Similarity=0.208  Sum_probs=42.8

Q ss_pred             EEEccCCCEEEEEEcCCCCeEEEEEEEcccCCCCCCCCCcceeeC
Q 037967           22 RLVLKNSLQVLLISDPDADKCAASMNVSVGAFCDPVGLEGLAHFL   66 (66)
Q Consensus        22 ~~~L~NGl~v~~~~~~~~~~~~~~~~v~~Gs~~ep~~~~GlAHfl   66 (66)
                      ..+|+|||+|+++++++.+.+++++++++||++|+++.+|+|||+
T Consensus         3 ~~~L~NGl~v~~~~~~~~~~v~i~~~~~~Gs~~E~~~~~G~ahll   47 (213)
T d3cx5a1           3 VTQLSNGIVVATEHNPSAHTASVGVVFGSGAANENPYNNGVSNLW   47 (213)
T ss_dssp             CEEEESSSEEEEEECTTCSSEEEEEEESCCGGGSCTTTTTHHHHH
T ss_pred             eEEcCCCCEEEEEECCCCCEEEEEEEEccccCCCCCCCccHHHHH
Confidence            468999999999999999999999999999999999999999985

>d1hr6b1 d.185.1.1 (B:24-245) Mitochondrial processing peptidase (MPP) beta chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: LuxS/MPP-like metallohydrolase
superfamily: LuxS/MPP-like metallohydrolase
family: MPP-like
domain: Mitochondrial processing peptidase (MPP) beta chain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.41  E-value=1e-13  Score=83.92  Aligned_cols=48  Identities=27%  Similarity=0.344  Sum_probs=45.4

Q ss_pred             ceEEEEccCCCEEEEEEcCCCCeEEEEEEEcccCCCCCCCCCcceeeC
Q 037967           19 QYRRLVLKNSLQVLLISDPDADKCAASMNVSVGAFCDPVGLEGLAHFL   66 (66)
Q Consensus        19 ~~~~~~L~NGl~v~~~~~~~~~~~~~~~~v~~Gs~~ep~~~~GlAHfl   66 (66)
                      .++..+|+|||+|++++++..+.+++++++++|+++|+++++|+|||+
T Consensus         2 ~~~~~~L~NGl~v~~~~~~~~~~~~i~l~~~~Gs~~e~~~~~G~s~ll   49 (222)
T d1hr6b1           2 GTRTSKLPNGLTIATEYIPNTSSATVGIFVDAGSRAENVKNNGTAHFL   49 (222)
T ss_dssp             CCEEEECTTSCEEEEEECSSCSEEEEEEEEECSGGGCCTTTTTHHHHH
T ss_pred             CcEEEEcCCCCEEEEEECCCCCEEEEEEEECccccCcCCCCCccHHHH
Confidence            467899999999999999999999999999999999999999999984

>d1ppjb1 d.185.1.1 (B:17-235) Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: LuxS/MPP-like metallohydrolase
superfamily: LuxS/MPP-like metallohydrolase
family: MPP-like
domain: Cytochrome bc1 core subunit 2
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.33  E-value=5e-13  Score=82.09  Aligned_cols=48  Identities=17%  Similarity=0.209  Sum_probs=42.9

Q ss_pred             cceEEEEccCCCEEEEEEcCCCCeEEEEEEEcccCCCCCCCCCcceeeC
Q 037967           18 RQYRRLVLKNSLQVLLISDPDADKCAASMNVSVGAFCDPVGLEGLAHFL   66 (66)
Q Consensus        18 ~~~~~~~L~NGl~v~~~~~~~~~~~~~~~~v~~Gs~~ep~~~~GlAHfl   66 (66)
                      .++++.+|+|||+|+..++ ..+.+++++++++||++||++..|+|||+
T Consensus         6 ~~~~~~~L~NGl~v~~~~~-~~p~v~i~~~v~~Gs~~e~~~~~G~ahll   53 (219)
T d1ppjb1           6 QDLEFTRLPNGLVIASLEN-YAPASRIGLFIKAGSRYENSNNLGTSHLL   53 (219)
T ss_dssp             CCCEEEECTTSCEEEEECC-CCSEEEEEEEESCSGGGCCTTSTTHHHHH
T ss_pred             CceeEEECCCCCEEEEEeC-CCCEEEEEEEEcccccccCCCCccHHHHH
Confidence            4688999999999976555 46999999999999999999999999985

>d1ppja1 d.185.1.1 (A:2-233) Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: LuxS/MPP-like metallohydrolase
superfamily: LuxS/MPP-like metallohydrolase
family: MPP-like
domain: Cytochrome bc1 core subunit 1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.28  E-value=1.4e-12  Score=79.80  Aligned_cols=50  Identities=16%  Similarity=0.235  Sum_probs=44.0

Q ss_pred             CccceEEEEccCCCEEEEEEcCCCCeEEEEEEEcccCCCCCCCCCcceeeC
Q 037967           16 DKRQYRRLVLKNSLQVLLISDPDADKCAASMNVSVGAFCDPVGLEGLAHFL   66 (66)
Q Consensus        16 d~~~~~~~~L~NGl~v~~~~~~~~~~~~~~~~v~~Gs~~ep~~~~GlAHfl   66 (66)
                      ..+++++.+|+|||+|++. +...+.+++.+++++||++||++.+|+|||+
T Consensus         9 ~~p~~~~~~L~NGl~V~~~-~~~~~~~~i~l~~~~Gs~~e~~~~~G~a~ll   58 (232)
T d1ppja1           9 SVPETQVSQLDNGLRVASE-QSSQPTCTVGVWIDAGSRYESEKNNGAGYFV   58 (232)
T ss_dssp             TSCCCEEEECTTSCEEEEE-ECCCSEEEEEEEESCSGGGCCTTTTTHHHHH
T ss_pred             cCCCcEEEECCCCCEEEEE-cCCCCEEEEEEEEcccccccCCCCcccHHHH
Confidence            3457899999999998765 5667899999999999999999999999985

>d1hr6a1 d.185.1.1 (A:14-233) Mitochondrial processing peptidase (MPP) alpha chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: LuxS/MPP-like metallohydrolase
superfamily: LuxS/MPP-like metallohydrolase
family: MPP-like
domain: Mitochondrial processing peptidase (MPP) alpha chain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.21  E-value=4.2e-12  Score=77.94  Aligned_cols=47  Identities=23%  Similarity=0.379  Sum_probs=42.7

Q ss_pred             ceEEEEccCCCEEEEEEcCCCCeEEEEEEEcccCCCCCCCCCcceeeC
Q 037967           19 QYRRLVLKNSLQVLLISDPDADKCAASMNVSVGAFCDPVGLEGLAHFL   66 (66)
Q Consensus        19 ~~~~~~L~NGl~v~~~~~~~~~~~~~~~~v~~Gs~~ep~~~~GlAHfl   66 (66)
                      .|+..+|+||++|++.+.+. +.+++++++++|+++||++.+|+|||+
T Consensus         5 ~~~~~~L~NGl~v~~~~~~~-~~~~v~l~~~~G~~~e~~~~~G~a~ll   51 (220)
T d1hr6a1           5 NFKLSSLANGLKVATSNTPG-HFSALGLYIDAGSRFEGRNLKGCTHIL   51 (220)
T ss_dssp             CCEEEECTTSCEEEEESCCC-SSEEEEEEESCCGGGCTTTTTTHHHHH
T ss_pred             CceEEEcCCCCEEEEEeCCC-CEEEEEEEEcccccccCCCCchHHHHH
Confidence            58999999999998777774 789999999999999999999999985

>d2fgea4 d.185.1.1 (A:15-271) Presequence protease 1, PREP1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: LuxS/MPP-like metallohydrolase
superfamily: LuxS/MPP-like metallohydrolase
family: MPP-like
domain: Presequence protease 1, PREP1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.32  E-value=1.6e-07  Score=58.77  Aligned_cols=44  Identities=23%  Similarity=0.260  Sum_probs=34.7

Q ss_pred             cceEEEEccCCCEEEEEEcCCCCeEEEEEEEcccCCCCCCCCCcceeeC
Q 037967           18 RQYRRLVLKNSLQVLLISDPDADKCAASMNVSVGAFCDPVGLEGLAHFL   66 (66)
Q Consensus        18 ~~~~~~~L~NGl~v~~~~~~~~~~~~~~~~v~~Gs~~ep~~~~GlAHfl   66 (66)
                      ..+.+.-.+||++|+++++++...+     +.+|+.++|.+.+|+||||
T Consensus        22 ~~~~~~h~~~G~~v~~i~~~~~~~~-----f~i~~~t~p~~~~G~aH~L   65 (257)
T d2fgea4          22 KAILFKHKKTGCEVMSVSNEDENKV-----FGVVFRTPPKDSTGIPHIL   65 (257)
T ss_dssp             EEEEEEETTTCCEEEEEECSCSSEE-----EEEEEECCCSSSSCHHHHH
T ss_pred             eeEEEEEcCCCCEEEEEecCCCccE-----EEEEeCCCCCCCcChhHHH
Confidence            3344445689999999999986553     3568899999999999986

>d3cx5b1 d.185.1.1 (B:17-218) Cytochrome bc1 core subunit 2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: LuxS/MPP-like metallohydrolase
superfamily: LuxS/MPP-like metallohydrolase
family: MPP-like
domain: Cytochrome bc1 core subunit 2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.12  E-value=6e-07  Score=52.70  Aligned_cols=35  Identities=26%  Similarity=0.373  Sum_probs=28.8

Q ss_pred             CEEEEEEcCCCCeEEEEEEEcccCCCCCCCCCcceeeC
Q 037967           29 LQVLLISDPDADKCAASMNVSVGAFCDPVGLEGLAHFL   66 (66)
Q Consensus        29 l~v~~~~~~~~~~~~~~~~v~~Gs~~ep~~~~GlAHfl   66 (66)
                      |+|+....+ .+.+++++++++||++||+  +|+|||+
T Consensus         1 l~v~~~d~~-~~~~~~~l~~~~Gs~~e~~--~Glahll   35 (202)
T d3cx5b1           1 LTVSARDAP-TKISTLAVKVHGGSRYATK--DGVAHLL   35 (202)
T ss_dssp             CEEEEECCS-CSEEEEEEEESCSGGGCSS--TTHHHHH
T ss_pred             CEEEeccCC-CCeEEEEEEEeecCCCCCc--chHHHHH
Confidence            466664455 6999999999999999985  7999985

>d1q2la1 d.185.1.1 (A:504-732) Protease III {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: LuxS/MPP-like metallohydrolase
superfamily: LuxS/MPP-like metallohydrolase
family: MPP-like
domain: Protease III
species: Escherichia coli [TaxId: 562]

Probab=97.95  E-value=1.4e-06  Score=51.88  Aligned_cols=58  Identities=14%  Similarity=0.090  Sum_probs=47.2

Q ss_pred             ceeecCCCccceEEEEccCCCEEEEEEcCC---CCeEEEEEEEcccCCCCCCCCCcceeeC
Q 037967            9 EIIKPRTDKRQYRRLVLKNSLQVLLISDPD---ADKCAASMNVSVGAFCDPVGLEGLAHFL   66 (66)
Q Consensus         9 ~~~k~~~d~~~~~~~~L~NGl~v~~~~~~~---~~~~~~~~~v~~Gs~~ep~~~~GlAHfl   66 (66)
                      .++++..+........++||++|++.++..   .|++.+.+.+++|+..+++...|++|++
T Consensus         9 ~l~~~~~~~~~P~~~~~~~g~~v~~~~d~~f~~~P~~~i~~~~~~~~~~~~~~~~~l~~L~   69 (229)
T d1q2la1           9 SLIKSEKKYDHPELIVDESNLRVVYAPSRYFASEPKADVSLILRNPKAMDSARNQVMFALN   69 (229)
T ss_dssp             CCCCCSSCCSSCEEEEEETTEEEEEECCSSCTTSSEEEEEEEEECGGGGSSHHHHHHHHHH
T ss_pred             ccCCCCcCCCCCEEEEeCCCeEEEEECCCccCCCCEEEEEEEEEecccccChhHHHHHHHH
Confidence            344545454556778889999999999863   6899999999999999999999998864