Citrus Sinensis ID: 037969

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300
Protein Sequence
ARALRNKSLHEWKNALRELQTPSVVNFEGVPAETYSSIELSFKYLKGEQLKKIFLLCSLIGNSFWFTDLFKYSMGLGIFQGVNRMVDARNKLYALVHELRDSCLLLEGDSSEQFSMHDVVYDVVVSIACRDQHVFLVRNEVVWEWPDEDALKKCSAISLLNSSIHEVSEEFECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPSSIGLLANLQTLCLDQSMLGDIAIIGKLKNLEILSFLNSDIVRLPGELGQLTKLRLLDLTDCLQLKFIVPNVLSSFTRLEELYM
Secondary Structure (PSIPRED)
ccccccccHHHHHHHHHHHccccccccccccccHHHHHHHHHcccccHHHHHHHHHHHHccccccHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHcccccccccccEEEcHHHHHHHHHHHHcccEEEEEccccccccccccccccEEEEEEEccccccccccccccccEEEEEccccccccccccHHHcccccccEEEccccccccccHHHcccccccEEccccccccccHHHHccccccEEEccccccccccHHHcccccccEEEccccccccccccccccccccccEEcc
Secondary Structure Prediction (SSPRO)
ccHHccccHHHHHHHHHHHHcccccccccccccccHHHEEcHcccccHHHHHHHHHHHcccccccHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHccccccccEEEEHHHHHHHHHHHHcccccEEEEEcccccccccccHHHHEEEEEEcccccccccccccccccEEEEEEccccccccccHHHHHHccccEEEEccccccccccccHHHHHHHHEEEcccccccccccHHHHHHcEEEEcccccHHHccHHHHHHHccEEEEcccccccccccccHHHHHHHccEEcc
Coil and Loop (DISEMBL)
ARALRNKSLHEWKNALRelqtpsvvnfegvpaetySSIELSFKYLKGEQLKKIFLLCSLignsfwftDLFKYSMGLGIFQGVNRMVDARNKLYALVHELRDSclllegdsseqfsmhDVVYDVVVSIACRDQHVFLVRNEvvwewpdedalkkCSAISLLNSSIHEVSEEFECLQLEFLHisqntfvevnipdnifkgmKTLRVIDLTRMRLFSLPSSIGLLANLQTLCLDQSMLGDIAIIGKLKNLEILSFLNSdivrlpgelgqltklrlldltdclqlkfivpnvlssFTRLEELYM
Flexible Loop (DISEMBL)
aralrnkslhewknalrelqtpsvvnfEGVPAETYSSIELSFKYLKGEQLKKIFLLCSLIGNSFWFTDLFKYSMGLGIFQGVNRMVDARNKLYALVHELRDSCLLLEGDSSEQFSMHDVVYDVVVSIACRDQHVFLVRNEVVWEWPDEDALKKCSAISLLNSSIHEVSEEFECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPSSIGLLANLQTLCLDQSMLGDIAIIGKLKNLEILSFLNSDIVRLPGELGQLTKLRLLDLTDCLqlkfivpnvlssftrleelym
Low Complexity Region (SEG)
ARALRNKSLHEWKNALRELQTPSVVNFEGVPAETYSSIELSFKYLKGEQLKKIFLLCSLIGNSFWFTDLFKYSMGLGIFQGVNRMVDARNKLYALVHELRDSCLLLEGDSSEQFSMHDVVYDVVVSIACRDQHVFLVRNEVVWEWPDEDALKKCSAISLLNSSIHEVSEEFECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPSSIGLLANLQTLCLDQSMLGDIAIIGKLKNLEILSFLNSDIVRLPGElgqltklrlldltdclqlkFIVPNVLSSFTRLEELYM
Disordered region (IsUnstruct)
*************NALRELQTPSVVNFEGVPAETYSSIELSFKYLKGEQLKKIFLLCSLIGNSFWFTDLFKYSMGLGIFQGVNRMVDARNKLYALVHELRDSCLLLEGDSSEQFSMHDVVYDVVVSIACRDQHVFLVRNEVVWEWPDEDALKKCSAISLLNSSIHEVSEEFECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPSSIGLLANLQTLCLDQSMLGDIAIIGKLKNLEILSFLNSDIVRLPGELGQLTKLRLLDLTDCLQLKFIVPNVLSSFTRL*****
Disordered Region (DISOPRED)
**A*RNKSLHEWKNALRELQTPS*****GVPAETYSSIELSFKYLKGEQLKKIFLLCSLIGNSFWFTDLFKYSMGLGIFQGVNRMVDARNKLYALVHELRDSCLLLEGDSSEQFSMHDVVYDVVVSIACRDQHVFLVRNEVVWEWPDEDALKKCSAISLLNSSIHEVSEEFECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPSSIGLLANLQTLCLDQSMLGDIAIIGKLKNLEILSFLNSDIVRLPGELGQLTKLRLLDLTDCLQLKFIVPNVLSSFTRLEELYM
Disordered Region (DISEMBL)
ARALRNKSLHEWKNALRELQTPSVVNFEGVPAETYSSIELSFKYLKGEQLKKIFLLCSLIGNSFWFTDLFKYSMGLGIFQGVNRMVDARNKLYALVHELRDSCLLLEGDSSEQFSMHDVVYDVVVSIACRDQHVFLVRNEVVWEWPDEDALKKCSAISLLNSSIHEVSEEFECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPSSIGLLANLQTLCLDQSMLGDIAIIGKLKNLEILSFLNSDIVRLPGELGQLTKLRLLDLTDCLQLKFIVPNVLSSFTRLEELYM
Disordered Region (DISPRO)
*****NKSLHEWKNALRELQTPSVVNFEGVPAETYSSIELSFKYLKGEQLKKIFLLCSLIGNSFWFTDLFKYSMGLGIFQGVNRMVDARNKLYALVHELRDSCLLLEGDSSEQFSMHDVVYDVVVSIACRDQHVFLVRNEVVWEWPDEDALKKCSAISLLNSSIHEVSEEFECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPSSIGLLANLQTLCLDQSMLGDIAIIGKLKNLEILSFLNSDIVRLPGELGQLTKLRLLDLTDCLQLKFIVPNVLSSFTRLEELYM
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
ARALRNKSLHEWKNALRELQTPSVVNFEGVPAETYSSIELSFKYLKGEQLKKIFLLCSLIGNSFWFTDLFKYSMGLGIFQGVNRMVDARNKLYALVHELRDSCLLLEGDSSEQFSMHDVVYDVVVSIACRDQHVFLVRNEVVWEWPDEDALKKCSAISLLNSSIHEVSEEFECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPSSIGLLANLQTLCLDQSMLGDIAIIGKLKNLEILSFLNSDIVRLPGELGQLTKLRLLDLTDCLQLKFIVPNVLSSFTRLEELYM
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	300	2.2.26 [Sep-21-2011]
O81825	919	Probable disease resistan	yes	no	0.98	0.319	0.277	7e-21
Q9T048	985	Disease resistance protei	no	no	0.98	0.298	0.288	4e-20
Q42484	909	Disease resistance protei	no	no	0.803	0.265	0.293	4e-15
Q9FLB4	874	Putative disease resistan	no	no	0.806	0.276	0.289	2e-14
O64973	889	Disease resistance protei	no	no	0.866	0.292	0.296	2e-14
Q9SH22	884	Probable disease resistan	no	no	0.966	0.328	0.261	2e-14
Q9SI85	893	Probable disease resistan	no	no	0.96	0.322	0.258	2e-12
Q9C8K0	854	Probable disease resistan	no	no	0.783	0.275	0.280	4e-12
Q8RXS5	888	Probable disease resistan	no	no	0.87	0.293	0.297	7e-12
Q8L3R3	885	Disease resistance protei	no	no	0.73	0.247	0.282	2e-11

>sp|O81825|DRL28_ARATH Probable disease resistance protein At4g27220 OS=Arabidopsis thaliana GN=At4g27220 PE=2 SV=1

 Score =  101 bits (251), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 86/310 (27%), Positives = 150/310 (48%), Gaps = 16/310 (5%)

Query: 1   ARALRNKSLHE-WKNALRELQ--TPSVVNFEGVPAETYSSIELSFKYLKGEQLKKIFLLC 57
            R LR K   E WK+ L  L+   PS+   E +    + +++LS+ +L+ + +K  FL C
Sbjct: 316 GRTLRGKPQVEVWKHTLNLLKRSAPSIDTEEKI----FGTLKLSYDFLQ-DNMKSCFLFC 370

Query: 58  SLIGN--SFWFTDLFKYSMGLGIFQGVNRMVDARNKLYALVHELRDSCLLLEGDSSEQFS 115
           +L     S   ++L  Y +  G+  G +   D  N+   LV  L+DSCLL +GDS +   
Sbjct: 371 ALFPEDYSIKVSELIMYWVAEGLLDGQHHYEDMMNEGVTLVERLKDSCLLEDGDSCDTVK 430

Query: 116 MHDVVYDVVV---SIACRDQHVFLVRNEVVWEWPDEDALKKCSAISLLNSSIHEVSEE-F 171
           MHDVV D  +   S      H  ++    + E+P +  +     +SL+ + +  +     
Sbjct: 431 MHDVVRDFAIWFMSSQGEGFHSLVMAGRGLIEFPQDKFVSSVQRVSLMANKLERLPNNVI 490

Query: 172 ECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPSSIGLLANLQTLCLD 231
           E ++   L +  N+ V+  +P+   +    LR++DL+ +R+ +LP S   L +L++L L 
Sbjct: 491 EGVETLVLLLQGNSHVK-EVPNGFLQAFPNLRILDLSGVRIRTLPDSFSNLHSLRSLVLR 549

Query: 232 Q-SMLGDIAIIGKLKNLEILSFLNSDIVRLPGELGQLTKLRLLDLTDCLQLKFIVPNVLS 290
               L ++  +  L  L+ L    S I  LP  L  L+ LR + +++  QL+ I    + 
Sbjct: 550 NCKKLRNLPSLESLVKLQFLDLHESAIRELPRGLEALSSLRYICVSNTYQLQSIPAGTIL 609

Query: 291 SFTRLEELYM 300
             + LE L M
Sbjct: 610 QLSSLEVLDM 619

Probable disease resistance protein.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9T048|DRL27_ARATH Disease resistance protein At4g27190 OS=Arabidopsis thaliana GN=At4g27190 PE=2 SV=1

 Score = 99.0 bits (245), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 89/309 (28%), Positives = 156/309 (50%), Gaps = 15/309 (4%)

Query: 3   ALRNK-SLHEWKNALRELQTPSVVNFEGVPAETYSSIELSFKYLKGEQLKKIFLLCSLIG 61
           A+R K ++  W + L +L + SV   + +  + +  ++LS+ +L+ ++ K  FLLC+L  
Sbjct: 348 AMRGKKNVKLWNHVLSKL-SKSVPWIKSIEEKIFQPLKLSYDFLE-DKAKFCFLLCALFP 405

Query: 62  N--SFWFTDLFKYSMGLGIFQGVNRMVDARNKLYALVHELRDSCLLLEGDSSEQFSMHDV 119
              S   T++ +Y M  G  + +    D+ N+    V  L+D CLL +GD  +   MHDV
Sbjct: 406 EDYSIEVTEVVRYWMAEGFMEELGSQEDSMNEGITTVESLKDYCLLEDGDRRDTVKMHDV 465

Query: 120 VYDV---VVSIACRDQHVFLVRNEVVWEWPDEDALKKCSAISLLNS---SIHEVSEEFEC 173
           V D    ++S +  D H  ++    + +   +        +SL+N+   S+ ++ EEF C
Sbjct: 466 VRDFAIWIMSSSQDDSHSLVMSGTGLQDIRQDKLAPSLRRVSLMNNKLESLPDLVEEF-C 524

Query: 174 LQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPS-SIGLLANLQTLCL-D 231
           ++   L + Q  F+   +P    +   TLR+++L+  R+ S PS S+  L +L +L L D
Sbjct: 525 VKTSVL-LLQGNFLLKEVPIGFLQAFPTLRILNLSGTRIKSFPSCSLLRLFSLHSLFLRD 583

Query: 232 QSMLGDIAIIGKLKNLEILSFLNSDIVRLPGELGQLTKLRLLDLTDCLQLKFIVPNVLSS 291
              L  +  +  L  LE+L    + I+  P  L +L + R LDL+  L L+ I   V+S 
Sbjct: 584 CFKLVKLPSLETLAKLELLDLCGTHILEFPRGLEELKRFRHLDLSRTLHLESIPARVVSR 643

Query: 292 FTRLEELYM 300
            + LE L M
Sbjct: 644 LSSLETLDM 652

Disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q42484|RPS2_ARATH Disease resistance protein RPS2 OS=Arabidopsis thaliana GN=RPS2 PE=1 SV=1

 Score = 82.4 bits (202), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 83/283 (29%), Positives = 129/283 (45%), Gaps = 42/283 (14%)

Query: 31  PAE------TYSSIELSFKYLKGEQLKKIFLLCSLIG--NSFWFTDLFKYSMGLGIF--- 79
           PAE       ++ ++ S+  L+ + L+  FL C+L    +S     L +Y +G G     
Sbjct: 379 PAEMKGMNYVFALLKFSYDNLESDLLRSCFLYCALFPEEHSIEIEQLVEYWVGEGFLTSS 438

Query: 80  QGVNRMVDARNKLYALVHELRDSCLLLEGDSSEQFSMHDVVYDVVVSIACRD---QHVFL 136
            GVN +     K Y L+ +L+ +CLL  GD   Q  MH+VV    + +A      + + L
Sbjct: 439 HGVNTIY----KGYFLIGDLKAACLLETGDEKTQVKMHNVVRSFALWMASEQGTYKELIL 494

Query: 137 VRNEVVW-EWPDEDALKKCSAISLLNSSIHEVSEEFECLQLEFLHISQNTFVEVNIPDNI 195
           V   +   E P  +  ++   ISLL++ I  + E+  C +L  L + QN+ ++  IP   
Sbjct: 495 VEPSMGHTEAPKAENWRQALVISLLDNRIQTLPEKLICPKLTTLMLQQNSSLK-KIPTGF 553

Query: 196 FKGMKTLRVIDLTRMRLFSLPSSIGLLANLQTLCLDQSMLGDIAIIGKLKNLEILSFLNS 255
           F  M  LRV+DL+   +  +P SI  L  L  L    SM G                  +
Sbjct: 554 FMHMPVLRVLDLSFTSITEIPLSIKYLVELYHL----SMSG------------------T 591

Query: 256 DIVRLPGELGQLTKLRLLDLTDCLQLKFIVPNVLSSFTRLEEL 298
            I  LP ELG L KL+ LDL     L+ I  + +   ++LE L
Sbjct: 592 KISVLPQELGNLRKLKHLDLQRTQFLQTIPRDAICWLSKLEVL 634

Disease resistance (R) protein that specifically recognizes the AvrRpt2 type III effector avirulence protein from Pseudomonas syringae. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Acts via its interaction with RIN4, and probably triggers the plant resistance when RIN4 is degraded by AvrRpt2.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FLB4|DRL31_ARATH Putative disease resistance protein At5g05400 OS=Arabidopsis thaliana GN=At5g05400 PE=2 SV=1

 Score = 80.5 bits (197), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 82/283 (28%), Positives = 128/283 (45%), Gaps = 41/283 (14%)

Query: 5   RNKSLHEWKNALRELQTPSVVNFEGVPAETYSSIELSFKYLKGEQLKKIFLLCSLIGNSF 64
           R KS+ EW +A        V  F G+ A+  S ++ S+  LK E+ K  FL  +L    +
Sbjct: 361 RKKSIEEWHDA--------VGVFSGIEADILSILKFSYDDLKCEKTKSCFLFSALFPEDY 412

Query: 65  WF--TDLFKYSMGLGIFQGVNRMVDARNKLYALVHELRDSCLLLEGDSSEQFSMHDVVYD 122
                DL +Y +G GI  G   +     K Y ++  L  + LL E ++ E+  MHDVV +
Sbjct: 413 EIGKDDLIEYWVGQGIILGSKGI---NYKGYTIIGTLTRAYLLKESETKEKVKMHDVVRE 469

Query: 123 VV--VSIACRDQ---HVFLVR-NEVVWEWPDEDALKKCSAISLLNSSIHEVSEEFECLQL 176
           +   +S  C DQ   +V +V  N  + + P  +  K    +SL+ + I E  E   C +L
Sbjct: 470 MALWISSGCGDQKQKNVLVVEANAQLRDIPKIEDQKAVRRMSLIYNQIEEACESLHCPKL 529

Query: 177 EFLHISQNTFVEVNI-----------------PDNI----FKGMKTLRVIDLTRMRLFSL 215
           E L +  N   +++                  P+ I    F  + +LR ++L+   + SL
Sbjct: 530 ETLLLRDNRLRKISREFLSHVPILMVLDLSLNPNLIELPSFSPLYSLRFLNLSCTGITSL 589

Query: 216 PSSIGLLANLQTLCLDQS-MLGDIAIIGKLKNLEILSFLNSDI 257
           P  +  L NL  L L+ + ML  I  I  L NLE+L    S I
Sbjct: 590 PDGLYALRNLLYLNLEHTYMLKRIYEIHDLPNLEVLKLYASGI 632

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|O64973|RPS5_ARATH Disease resistance protein RPS5 OS=Arabidopsis thaliana GN=RPS5 PE=1 SV=2

 Score = 80.1 bits (196), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 86/290 (29%), Positives = 139/290 (47%), Gaps = 30/290 (10%)

Query: 6   NKSLHEWKNALRELQTPSVVNFEGVPAETYSSIELSFKYLKGEQLKKIFLLCSLIGNSFW 65
            +++HEW +A+ ++ T S ++F G+  E    ++ S+  L GE +K  FL CSL    + 
Sbjct: 365 KRTVHEWCHAI-DVLTSSAIDFSGMEDEILHVLKYSYDNLNGELMKSCFLYCSLFPEDYL 423

Query: 66  FTD--LFKYSMGLGIF---QGVNRMVDARNKLYALVHELRDSCLLLEGDSSE-QFSMHDV 119
                L  Y +  G     +G  R +   N+ Y ++  L  +CLLLE + ++    MHDV
Sbjct: 424 IDKEGLVDYWISEGFINEKEGRERNI---NQGYEIIGTLVRACLLLEEERNKSNVKMHDV 480

Query: 120 VYDVVVSIAC---RDQHVFLVRNEV-VWEWPDEDALKKCSAISLLNSSIHEVSEEFECLQ 175
           V ++ + I+    + +   +VR  V + E P          ISL+N+ I E+ +  EC  
Sbjct: 481 VREMALWISSDLGKQKEKCIVRAGVGLREVPKVKDWNTVRKISLMNNEIEEIFDSHECAA 540

Query: 176 LEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMR-LFSLPSSIGLLA-----NLQTLC 229
           L  L + +N  V+++     F+ M  L V+DL+  + L  LP  I  LA     NL   C
Sbjct: 541 LTTLFLQKNDVVKISA--EFFRCMPHLVVLDLSENQSLNELPEEISELASLRYFNLSYTC 598

Query: 230 LDQSMLGDIAIIGKLK--NLEILSFLNSDIVRLPGELGQLTKLRLLDLTD 277
           + Q  +G +  + KL   NLE +S L S +      +  L  LR L L D
Sbjct: 599 IHQLPVG-LWTLKKLIHLNLEHMSSLGSIL-----GISNLWNLRTLGLRD 642

Disease resistance (R) protein that specifically recognizes the avrPphB type III effector avirulence protein from Pseudomonas syringae. Also confers resistance against Hyaloperonospora parasitica (downy mildew). Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Requires PBS1 to trigger the defense reaction against avrPphB. Probably triggers the defense mechanism when PBS1 is cleaved by avrPphB, suggesting that it detects indirectly the protease activity of avrPphB, and possibly binds to the cleaved RPS5.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SH22|DRL20_ARATH Probable disease resistance protein At1g63360 OS=Arabidopsis thaliana GN=At1g63360 PE=2 SV=1

 Score = 79.7 bits (195), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 89/340 (26%), Positives = 145/340 (42%), Gaps = 50/340 (14%)

Query: 6   NKSLHEWKNALRELQTPSVVNFEGVPAETYSSIELSFKYLKGEQLKKIFLLCSLIGNSFW 65
            +++ EW++A+  L +     F G+  +    ++ S+  LKGEQ+K   L C+L      
Sbjct: 361 KRTIQEWRHAIHVLNS-YAAEFIGMEDKVLPLLKYSYDNLKGEQVKSSLLYCALYPEDAK 419

Query: 66  F--TDLFKYSMGLGIFQGVNRMVDARNKLYALVHELRDSCLLLE---GDSSEQFSMHDVV 120
               DL ++ +   I  G   +  A +K Y ++  L  + LL+E   GD      MHDVV
Sbjct: 420 ILKEDLIEHWICEEIIDGSEGIEKAEDKGYEIIGCLVRASLLMEWDDGDGRRAVCMHDVV 479

Query: 121 YDVVVSIACR---DQHVFLVRNEV-VWEWPDEDALKKCSAISLLNSSIHEVSEEFECLQL 176
            ++ + IA      +  F+VR  V V E P          +SL+ + IH +   +EC++L
Sbjct: 480 REMALWIASELGIQKEAFIVRAGVGVREIPKIKNWNVVRRMSLMENKIHHLVGSYECMEL 539

Query: 177 EFLHISQNTFVEV-----NIPDNIFKGMKTLRVIDLTRMR-LFSLPSSIGLLANLQTLCL 230
             L + +  +  +      I    F  M  L V+DL+  + LF LP  I  L +L+ L L
Sbjct: 540 TTLLLGKREYGSIRSQLKTISSEFFNCMPKLAVLDLSHNKSLFELPEEISNLVSLKYLNL 599

Query: 231 ------------------------DQSMLGDIAIIGKLKNLEILSFLNSDIVRLPGELGQ 266
                                       L  I  I  L NL++L    S   RLP +L  
Sbjct: 600 LYTEISHLPKGIQELKKIIHLNLEYTRKLESITGISSLHNLKVLKLFRS---RLPWDLNT 656

Query: 267 LTKLRLLDLTDCLQL-------KFIVPNVLSSFTRLEELY 299
           + +L  L+  + L         +F+  + L S +RL E+Y
Sbjct: 657 VKELETLEHLEILTTTIDPRAKQFLSSHRLLSHSRLLEIY 696

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SI85|DRL14_ARATH Probable disease resistance protein At1g62630 OS=Arabidopsis thaliana GN=At1g62630 PE=3 SV=2

 Score = 73.6 bits (179), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 89/344 (25%), Positives = 146/344 (42%), Gaps = 56/344 (16%)

Query: 6   NKSLHEWKNALRELQTPSVVNFEGVPAETYSSIELSFKYLKGEQLKKIFLLCSLIGNSFW 65
            +++ EW+NA+  L +     F G+  +    ++ S+  LKGE +K   L C+L      
Sbjct: 361 KRTIQEWRNAIHVLNS-YAAEFIGMEDKILPLLKYSYDNLKGEHVKSSLLYCALYPEDAK 419

Query: 66  F--TDLFKYSMGLGIFQGVNRMVDARNKLYALVHELRDSCLLLE-----GDSSEQFSMHD 118
               DL ++ +   I  G   +  A +K Y ++  L  + LL+E     G SS    MHD
Sbjct: 420 IRKEDLIEHWICEEIIDGSEGIEKAEDKGYDIIGSLVRASLLMECVDLKGKSS--VIMHD 477

Query: 119 VVYDVVVSIACR---DQHVFLVRNEV-VWEWPDEDALKKCSAISLLNSSIHEVSEEFECL 174
           VV ++ + IA      +  F+VR  V V E P          +SL+ + IH +   +EC+
Sbjct: 478 VVREMALWIASELGIQKEAFIVRAGVGVREIPKVKNWNVVRRMSLMGNKIHHLVGSYECM 537

Query: 175 QLEFLHISQNTFVEV-------NIPDNIFKGMKTLRVIDLTRMR-LFSLPSSIGLLANLQ 226
           +L  L + +  +  +        I    F  M  L V+DL+  + LF LP  I  L +L+
Sbjct: 538 ELTTLLLGEGEYGSIWRWSEIKTISSEFFNCMPKLAVLDLSHNQSLFELPEEISNLVSLK 597

Query: 227 TLCLDQ------------------------SMLGDIAIIGKLKNLEILSFLNSDIVRLPG 262
            L L                          S L  I  I  L NL++L    S   RLP 
Sbjct: 598 YLNLSHTGIRHLSKGIQELKKIIHLNLEHTSKLESIDGISSLHNLKVLKLYGS---RLPW 654

Query: 263 ELGQLTKLRLLDLTDCLQL-------KFIVPNVLSSFTRLEELY 299
           +L  + +L  L+  + L         +F+  + L S +RL +++
Sbjct: 655 DLNTVKELETLEHLEILTTTIDPRAKQFLSSHRLMSRSRLLQIF 698

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C8K0|DRL5_ARATH Probable disease resistance protein At1g51480 OS=Arabidopsis thaliana GN=At1g51480 PE=2 SV=2

 Score = 72.4 bits (176), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 74/264 (28%), Positives = 120/264 (45%), Gaps = 29/264 (10%)

Query: 7   KSLHEWKNALRELQTPSVVNFEGVPAETYSSIELSFKYLKGEQLKKIFLLCSLIGNSFWF 66
           +++ EW +A+  L +P+   F G+       ++ S+  LK  ++K  FL CSL    F  
Sbjct: 362 ETIQEWHHAINVLNSPAGHKFPGMEERILLVLKFSYDSLKNGEIKLCFLYCSLFPEDFEI 421

Query: 67  --TDLFKYSMGLGIFQGVNRMVD-ARNKLYALVHELRDSCLLLEGDSSEQFSMHDVVYDV 123
               L +Y +  G +   NR  D   N+ Y ++  L  + LL+E + + +  MH V+ ++
Sbjct: 422 EKEKLIEYWICEG-YINPNRYEDGGTNQGYDIIGLLVRAHLLIECELTTKVKMHYVIREM 480

Query: 124 VVSIAC------------RDQHVFLVRNEVVWEWPDEDALKKCSAISLLNSSIHEVSEEF 171
            + I                 HV ++ N++ WE            +SL+++ I ++S   
Sbjct: 481 ALWINSDFGKQQETICVKSGAHVRMIPNDINWE--------IVRQVSLISTQIEKISCSS 532

Query: 172 ECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDL-TRMRLFSLPSSIGLLANLQTLCL 230
           +C  L  L +  N    VNI    F  M  L V+DL T M L  LP  I  L +LQ L L
Sbjct: 533 KCSNLSTLLLPYNKL--VNISVGFFLFMPKLVVLDLSTNMSLIELPEEISNLCSLQYLNL 590

Query: 231 DQSMLGDIAIIGKLKNLEILSFLN 254
             S  G  ++ G +K L  L +LN
Sbjct: 591 --SSTGIKSLPGGMKKLRKLIYLN 612

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8RXS5|DRL40_ARATH Probable disease resistance protein At5g63020 OS=Arabidopsis thaliana GN=At5g63020 PE=2 SV=2

 Score = 71.6 bits (174), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 83/279 (29%), Positives = 140/279 (50%), Gaps = 18/279 (6%)

Query: 7   KSLHEWKNALRELQTPSVVNFEGVPAETYSSIELSFKYLKGEQLKKIFLLCSLI--GNSF 64
           +++ EW++A+ ++ T S   F G+  E    ++ S+  LK EQLK  F  C+L    ++ 
Sbjct: 364 RTVQEWRSAI-DVLTSSAAEFSGMEDEILPILKYSYDNLKSEQLKLCFQYCALFPEDHNI 422

Query: 65  WFTDLFKYSMGLGIFQGVNRMVDARNKLYALVHELRDSCLLLEGDSSEQFSMHDVVYDVV 124
              DL  Y +G G F   N+   A N+ Y ++  L  SCLL+E ++ E   MHDVV ++ 
Sbjct: 423 EKNDLVDYWIGEG-FIDRNKG-KAENQGYEIIGILVRSCLLME-ENQETVKMHDVVREMA 479

Query: 125 VSIAC---RDQHVFLVRNEV-VWEWPDEDALKKCSAISLLNSSIHEVSEEFECLQLEFLH 180
           + IA    + +  F+V+  +     P+ +  K    +SL+ ++I  + +  E  QL  L 
Sbjct: 480 LWIASDFGKQKENFIVQAGLQSRNIPEIEKWKVARRVSLMFNNIESIRDAPESPQLITLL 539

Query: 181 ISQNTFVEVNIPDNIFKGMKTLRVIDLTRMR-LFSLPSSIGLLANLQTLCLDQSMLGDIA 239
           + +N     +I  + F+ M  L V+DL+  R L  LP+ I    +LQ L L ++ +  I 
Sbjct: 540 LRKNFL--GHISSSFFRLMPMLVVLDLSMNRDLRHLPNEISECVSLQYLSLSRTRI-RIW 596

Query: 240 IIGKLKNLEILSFLNSDIVRLPGE---LGQLTKLRLLDL 275
             G L  L  L +LN +  R+      +  LT L++L L
Sbjct: 597 PAG-LVELRKLLYLNLEYTRMVESICGISGLTSLKVLRL 634

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8L3R3|RFL1_ARATH Disease resistance protein RFL1 OS=Arabidopsis thaliana GN=RFL1 PE=3 SV=2

 Score = 70.1 bits (170), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 65/230 (28%), Positives = 108/230 (46%), Gaps = 11/230 (4%)

Query: 7   KSLHEWKNALRELQTPSVVNFEGVPAETYSSIELSFKYLKGEQLKKIFLLCSLIGNSFWF 66
           +++ EW++A   L   S  +F G+  E    ++ S+  L GE  K  FL CSL    F  
Sbjct: 366 RTIQEWRHATEVLT--SATDFSGMEDEILPILKYSYDSLNGEDAKSCFLYCSLFPEDFEI 423

Query: 67  TD--LFKYSMGLGIFQGVNRMVDARNKLYALVHELRDSCLLLEGDSSEQ-FSMHDVVYDV 123
               L +Y +  G  +       A N+ Y ++  L  S LLLEG   +   SMHD+V ++
Sbjct: 424 RKEMLIEYWICEGFIKEKQGREKAFNQGYDILGTLVRSSLLLEGAKDKDVVSMHDMVREM 483

Query: 124 VVSI----ACRDQHVFLVRNEVVWEWPDEDALKKCSAISLLNSSIHEVSEEFECLQLEFL 179
            + I        +   +     + E P+ +  +    +SL+N++  ++    EC++L  L
Sbjct: 484 ALWIFSDLGKHKERCIVQAGIGLDELPEVENWRAVKRMSLMNNNFEKILGSPECVELITL 543

Query: 180 HISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFS-LPSSIGLLANLQTL 228
            + QN +  V+I    F+ M +L V+DL+     S LP  I  L +LQ L
Sbjct: 544 FL-QNNYKLVDISMEFFRCMPSLAVLDLSENHSLSELPEEISELVSLQYL 592

Disease resistance (R) protein.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	300
224083434	1144	cc-nbs-lrr resistance protein [Populus t	0.986	0.258	0.518	4e-73
255563252	1603	Disease resistance protein RPS5, putativ	0.983	0.184	0.478	4e-69
224111296	1315	cc-nbs-lrr resistance protein [Populus t	0.98	0.223	0.460	9e-67
147777048	1460	hypothetical protein VITISV_009359 [Viti	1.0	0.205	0.450	3e-65
359488027	1520	PREDICTED: disease resistance protein At	1.0	0.197	0.443	5e-65
296087872	1152	unnamed protein product [Vitis vinifera]	1.0	0.260	0.443	5e-65
359488288	1340	PREDICTED: LOW QUALITY PROTEIN: probable	0.96	0.214	0.461	7e-65
224111284	1340	cc-nbs-lrr resistance protein [Populus t	0.963	0.215	0.475	8e-64
147865073	1694	hypothetical protein VITISV_021876 [Viti	1.0	0.177	0.447	4e-63
255574526	1232	Disease resistance protein RFL1, putativ	0.983	0.239	0.453	3e-62

>gi|224083434|ref|XP_002307025.1| cc-nbs-lrr resistance protein [Populus trichocarpa] gi|222856474|gb|EEE94021.1| cc-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  280 bits (717), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 156/301 (51%), Positives = 210/301 (69%), Gaps = 5/301 (1%)

Query: 1   ARALRNKSLHEWKNALRELQTPSVVNFEGVPAETYSSIELSFKYLKGEQLKKIFLLCSLI 60
           ARAL+NK+L +WKNALREL+ PS  NF GV  + Y++IELS+ +L+ ++LK  FLLCS +
Sbjct: 355 ARALKNKNLSQWKNALRELKRPSPRNFAGVQEDVYAAIELSYNHLESKELKSTFLLCSRM 414

Query: 61  GNSFWFTDLFKYSMGLGIFQGVNRMVDARNKLYALVHELRDSCLLLEGDSSEQFSMHDVV 120
           G +    DL KY MGLG+F G   + +A++++++LVH+L+ S LLLE  S  QFSMHD V
Sbjct: 415 GYNASTRDLLKYGMGLGLFSGFVTVEEAQDRVHSLVHKLKASGLLLENHSDWQFSMHDAV 474

Query: 121 YDVVVSIACRDQHVFLVRNEVVWEWPDEDALKKCSAISLLNSSIHEVSEEFECLQLEFLH 180
            DV +SIA RD HVF+  +EV  +W  ++ LKK   I L  SS  E+  E E  QL+FLH
Sbjct: 475 RDVAISIAFRDCHVFVGGDEVEPKWSAKNMLKKYKEIWL--SSNIELLREMEYPQLKFLH 532

Query: 181 I-SQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPSSIGLLANLQTLCLDQSMLGDIA 239
           + S++  +E  I  NI +GM  L+V+ LT + L SLPS +  L NL+TLCL QS LG+IA
Sbjct: 533 VRSEDPSLE--ISSNICRGMHKLKVLVLTNISLVSLPSPLHFLKNLRTLCLHQSSLGEIA 590

Query: 240 IIGKLKNLEILSFLNSDIVRLPGELGQLTKLRLLDLTDCLQLKFIVPNVLSSFTRLEELY 299
            IG+LK LEILSF  S+I  LP ++GQLTKLR+LDL+DC +L  I PN+ S+ + LEEL 
Sbjct: 591 DIGELKKLEILSFAKSNIKHLPRQIGQLTKLRMLDLSDCFELDVIPPNIFSNLSMLEELC 650

Query: 300 M 300
           M
Sbjct: 651 M 651

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255563252|ref|XP_002522629.1| Disease resistance protein RPS5, putative [Ricinus communis] gi|223538105|gb|EEF39716.1| Disease resistance protein RPS5, putative [Ricinus communis]

 Score =  267 bits (683), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 145/303 (47%), Positives = 206/303 (67%), Gaps = 8/303 (2%)

Query: 1   ARALRNKSLHEWKNALRELQTPSVVNFEGVPAETYSSIELSFKYLKGEQLKKIFLLCSLI 60
           ARAL+NK L+ WK+A+++L   S  + E +  + YS++ELS+ +L G ++K +FLLC L+
Sbjct: 353 ARALKNKDLYVWKDAVKQL---SRCDNEEIQEKVYSALELSYNHLIGAEVKSLFLLCGLL 409

Query: 61  GNS-FWFTDLFKYSMGLGIFQGVNRMVDARNKLYALVHELRDSCLLLEGDSSEQFSMHDV 119
           G S     DL  YS GLG+F+G++ + DARN+++ L+ +L+ +CLLL+ D   +  +HDV
Sbjct: 410 GKSDIAILDLLMYSTGLGLFKGIDTLGDARNRVHKLISDLKAACLLLDSDIKGRVKIHDV 469

Query: 120 VYDVVVSIACRDQHVFLVRN-EVVWEWPDEDALKKCSAISLLNSSIHEVSEEFECLQLE- 177
           V DV +SIA R QH+F VRN  ++ EWP++D  K C+ ISL  + IH + E  EC +LE 
Sbjct: 470 VRDVAISIASRMQHLFTVRNGALLKEWPNKDVCKSCTRISLPYNDIHGLPEVLECPELEL 529

Query: 178 FLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPSSIGLLANLQTLCLDQSMLGD 237
           FL  +Q+  + + +PD  F+  K LRV++ T M   SLP S+G L NL TLCLD   L D
Sbjct: 530 FLLFTQD--ISLKVPDLCFELTKNLRVLNFTGMHFSSLPPSLGFLKNLFTLCLDWCALRD 587

Query: 238 IAIIGKLKNLEILSFLNSDIVRLPGELGQLTKLRLLDLTDCLQLKFIVPNVLSSFTRLEE 297
           +AIIG+L  L ILSF +SDIV LP E+ QLTKL+ LDL+ CL+LK I   ++S  T+LEE
Sbjct: 588 VAIIGELTGLTILSFKHSDIVELPREIRQLTKLKFLDLSHCLKLKVIPAKIISELTQLEE 647

Query: 298 LYM 300
           LYM
Sbjct: 648 LYM 650

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224111296|ref|XP_002332952.1| cc-nbs-lrr resistance protein [Populus trichocarpa] gi|222834264|gb|EEE72741.1| cc-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  259 bits (662), Expect = 9e-67,   Method: Compositional matrix adjust.
 Identities = 139/302 (46%), Positives = 205/302 (67%), Gaps = 8/302 (2%)

Query: 1   ARALRNKSLHEWKNALRELQTPSVVNFEGVPAETYSSIELSFKYLKGEQLKKIFLLCS-L 59
           ARAL+NK L+ WK AL++L   +  + + +  + Y  +ELS+K L+G+++K +FLLC  L
Sbjct: 347 ARALKNKDLYAWKKALKQL---TRFDKDDIDDQVYLGLELSYKSLRGDEIKSLFLLCGQL 403

Query: 60  IGNSFWFTDLFKYSMGLGIFQGVNRMVDARNKLYALVHELRDSCLLLEGDSSEQFSMHDV 119
             N+   +DL +Y +GL +F+G + + + RN L  LV EL+ SCLLLEGD      MHDV
Sbjct: 404 RSNNILISDLLRYGIGLDLFKGCSTLEETRNSLLTLVDELKASCLLLEGDKDGSVKMHDV 463

Query: 120 VYDVVVSIACRDQHVFLVRNEVVWEWPDEDALKKCSAISLLNSSIHEVSEEFECLQLE-F 178
           V+   +S+A RD HV  V +E   EWP  D L++ +AISL    I ++    EC  L  F
Sbjct: 464 VHSFAISVALRDHHVLTVADEF-KEWPANDVLQQYTAISLPFRKIPDLPAILECPNLNSF 522

Query: 179 LHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPSSIGLLANLQTLCLDQSMLGDI 238
           L ++++  ++  IPD+ F+ MK L+++DLT + L  LPSS+  L NLQTLCLD  +L DI
Sbjct: 523 LLLNKDPSLQ--IPDSFFREMKELKILDLTEVNLSPLPSSLQFLENLQTLCLDHCVLEDI 580

Query: 239 AIIGKLKNLEILSFLNSDIVRLPGELGQLTKLRLLDLTDCLQLKFIVPNVLSSFTRLEEL 298
           +IIG+L  L++LS ++S+IVRLP E+G++T+L+LLDL++C +L+ I PN LSS TRLE+L
Sbjct: 581 SIIGELNKLKVLSLMSSNIVRLPREIGKVTRLQLLDLSNCERLEVISPNALSSLTRLEDL 640

Query: 299 YM 300
           YM
Sbjct: 641 YM 642

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147777048|emb|CAN65562.1| hypothetical protein VITISV_009359 [Vitis vinifera]

 Score =  254 bits (649), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 136/302 (45%), Positives = 193/302 (63%), Gaps = 2/302 (0%)

Query: 1   ARALRNKSLHEWKNALRELQTPSVVNFEGVPAETYSSIELSFKYLKGEQLKKIFLLCSLI 60
           A+AL+NK++  WK+AL++L++ +  N  G+  + YSS++LS+++L+G+++K + LLC L 
Sbjct: 349 AKALKNKNVAIWKDALQQLESQTSTNITGMETKVYSSLKLSYEHLEGDEMKSLCLLCGLC 408

Query: 61  GNSFWFTDLFKYSMGLGIFQGVNRMVDARNKLYALVHELRDSCLLLEGDSSEQFSMHDVV 120
            +  + +DL KY +GL +FQG N + +A+N++  LV +L+ S  LLE   +    MHD+V
Sbjct: 409 YSQIYISDLLKYGVGLRLFQGTNTLEEAKNRIDTLVDKLKSSNFLLETGHNAVVRMHDLV 468

Query: 121 YDVVVSIACRDQHVFLVRNEVVW--EWPDEDALKKCSAISLLNSSIHEVSEEFECLQLEF 178
                 IA    HVF  +   V   EWP  D L+K + +SL +  IHE+ E   C +LE 
Sbjct: 469 RSTARKIASEQLHVFTHQKTTVRVEEWPRTDELQKVTWVSLGDCDIHELPEGLLCPELEL 528

Query: 179 LHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPSSIGLLANLQTLCLDQSMLGDI 238
               Q T   V IP   F+GMK L V+D + M+L SLP S+  LANL+TLCLD   LGDI
Sbjct: 529 FQCYQKTSSAVKIPHTFFEGMKQLEVLDFSNMQLPSLPLSLQCLANLRTLCLDGCKLGDI 588

Query: 239 AIIGKLKNLEILSFLNSDIVRLPGELGQLTKLRLLDLTDCLQLKFIVPNVLSSFTRLEEL 298
            II KLK LEILS ++SDI +LP E+ QLT LRL DL D  +LK I P+V+SS  RLE+L
Sbjct: 589 VIIAKLKKLEILSLIDSDIEQLPREIAQLTHLRLFDLKDSSKLKVIPPDVISSLFRLEDL 648

Query: 299 YM 300
            M
Sbjct: 649 CM 650

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359488027|ref|XP_002269288.2| PREDICTED: disease resistance protein At4g27190-like [Vitis vinifera]

 Score =  253 bits (647), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 133/300 (44%), Positives = 193/300 (64%)

Query: 1   ARALRNKSLHEWKNALRELQTPSVVNFEGVPAETYSSIELSFKYLKGEQLKKIFLLCSLI 60
           A+AL+NK L  W++ALR+L+     N +G+ A  YS++ELS+K+L+G+++K +FLLC L+
Sbjct: 352 AKALKNKGLSIWEDALRQLKRSIPTNIKGMDAMVYSTLELSYKHLEGDEVKSLFLLCGLM 411

Query: 61  GNSFWFTDLFKYSMGLGIFQGVNRMVDARNKLYALVHELRDSCLLLEGDSSEQFSMHDVV 120
            N  +  DL KY MGL +FQG N + +A+N++  LV  L+ S LLL+   +    MHDVV
Sbjct: 412 SNKIYIDDLLKYGMGLRLFQGTNTLEEAKNRIDTLVDSLKASKLLLDTGHNSFVRMHDVV 471

Query: 121 YDVVVSIACRDQHVFLVRNEVVWEWPDEDALKKCSAISLLNSSIHEVSEEFECLQLEFLH 180
            DV ++I  +   VF +R + + EWP  D L+ C+ +SL  + I E+  E  C +LE   
Sbjct: 472 RDVAIAIVSKVHRVFSLREDELVEWPKMDELQTCTKMSLAYNDICELPIELVCPELELFL 531

Query: 181 ISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPSSIGLLANLQTLCLDQSMLGDIAI 240
                   + IP+  F+ MK L+V+DL+ M   SLPSS+  L NL+TL L+   LGDI+I
Sbjct: 532 FYHTIDYHLKIPETFFEEMKKLKVLDLSNMHFTSLPSSLRCLTNLRTLSLNWCKLGDISI 591

Query: 241 IGKLKNLEILSFLNSDIVRLPGELGQLTKLRLLDLTDCLQLKFIVPNVLSSFTRLEELYM 300
           I +LK LE  SF+ S+I +LP E+ QLT LRL DL DC +L+ I PNV+SS ++LE L M
Sbjct: 592 IVELKKLEFFSFMGSNIEKLPREIAQLTHLRLFDLRDCSKLREIPPNVISSLSKLENLCM 651

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296087872|emb|CBI35155.3| unnamed protein product [Vitis vinifera]

 Score =  253 bits (647), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 133/300 (44%), Positives = 193/300 (64%)

Query: 1   ARALRNKSLHEWKNALRELQTPSVVNFEGVPAETYSSIELSFKYLKGEQLKKIFLLCSLI 60
           A+AL+NK L  W++ALR+L+     N +G+ A  YS++ELS+K+L+G+++K +FLLC L+
Sbjct: 172 AKALKNKGLSIWEDALRQLKRSIPTNIKGMDAMVYSTLELSYKHLEGDEVKSLFLLCGLM 231

Query: 61  GNSFWFTDLFKYSMGLGIFQGVNRMVDARNKLYALVHELRDSCLLLEGDSSEQFSMHDVV 120
            N  +  DL KY MGL +FQG N + +A+N++  LV  L+ S LLL+   +    MHDVV
Sbjct: 232 SNKIYIDDLLKYGMGLRLFQGTNTLEEAKNRIDTLVDSLKASKLLLDTGHNSFVRMHDVV 291

Query: 121 YDVVVSIACRDQHVFLVRNEVVWEWPDEDALKKCSAISLLNSSIHEVSEEFECLQLEFLH 180
            DV ++I  +   VF +R + + EWP  D L+ C+ +SL  + I E+  E  C +LE   
Sbjct: 292 RDVAIAIVSKVHRVFSLREDELVEWPKMDELQTCTKMSLAYNDICELPIELVCPELELFL 351

Query: 181 ISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPSSIGLLANLQTLCLDQSMLGDIAI 240
                   + IP+  F+ MK L+V+DL+ M   SLPSS+  L NL+TL L+   LGDI+I
Sbjct: 352 FYHTIDYHLKIPETFFEEMKKLKVLDLSNMHFTSLPSSLRCLTNLRTLSLNWCKLGDISI 411

Query: 241 IGKLKNLEILSFLNSDIVRLPGELGQLTKLRLLDLTDCLQLKFIVPNVLSSFTRLEELYM 300
           I +LK LE  SF+ S+I +LP E+ QLT LRL DL DC +L+ I PNV+SS ++LE L M
Sbjct: 412 IVELKKLEFFSFMGSNIEKLPREIAQLTHLRLFDLRDCSKLREIPPNVISSLSKLENLCM 471

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359488288|ref|XP_003633735.1| PREDICTED: LOW QUALITY PROTEIN: probable disease resistance protein At1g61310-like [Vitis vinifera]

 Score =  253 bits (646), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 139/301 (46%), Positives = 195/301 (64%), Gaps = 13/301 (4%)

Query: 1   ARALRNKSLHEWKNALRELQTPSVVNFEGVPAETYSSIELSFKYLKGEQLKKIFLLCSLI 60
           A+AL+NK++  WK+AL++L+T +  N  G+  + YS+++LS+K+L+G+++K +FLLC L 
Sbjct: 352 AKALKNKNVSIWKDALKQLKTQTSTNITGMGTKVYSTLKLSYKHLEGDEVKSLFLLCGLF 411

Query: 61  GNSFWFTDLFKYSMGLGIFQGVNRMVDARNKLYALVHELRDSCLLLEGDSSEQFSMHDVV 120
            N     DL KY MGL +FQG N + +A+N++  LV  L+ S LLLE   +  F MHDVV
Sbjct: 412 SNYIDIRDLLKYGMGLRLFQGTNTLEEAKNRIETLVDNLKASNLLLETRYNAVFRMHDVV 471

Query: 121 YDVVVSIACRDQHVFLVRNEV-VWEWPDEDALKKCSAISLLNSSIHEVSEEFECLQLEFL 179
            +V + IA ++ HVF  +  V + EWP+ D L+K + I L    I E+ E          
Sbjct: 472 QNVAIEIASKEHHVFTFQTGVRMEEWPNMDELQKFTMIYLDCCDIRELPEGL-------- 523

Query: 180 HISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPSSIGLLANLQTLCLDQSMLGDIA 239
               N    + IP+  F+GMK L+V+D T M L SLPSS+  LANL+TLCLD   LGDI 
Sbjct: 524 ----NHNSSLKIPNTFFEGMKQLKVLDFTNMHLPSLPSSLHCLANLRTLCLDACKLGDIT 579

Query: 240 IIGKLKNLEILSFLNSDIVRLPGELGQLTKLRLLDLTDCLQLKFIVPNVLSSFTRLEELY 299
           II +LK LEILS ++SDI +LP EL QLT LRLLDL    +LK I P+V+SS ++LE+L 
Sbjct: 580 IIAELKKLEILSLMDSDIEQLPRELSQLTHLRLLDLKGSSKLKVIPPDVISSLSQLEDLC 639

Query: 300 M 300
           M
Sbjct: 640 M 640

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224111284|ref|XP_002332949.1| cc-nbs-lrr resistance protein [Populus trichocarpa] gi|222834261|gb|EEE72738.1| cc-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  249 bits (637), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 146/307 (47%), Positives = 207/307 (67%), Gaps = 18/307 (5%)

Query: 1   ARALRNKSLHEWKNALRELQTPSVVNFEGVPAETYSSIELSFKYLKGEQLKKIFLLCS-L 59
           ARAL+N+ L+ WK+AL++L   +  + + +  + YS +ELS+K L+G+++K +FLLC   
Sbjct: 347 ARALKNEDLYAWKDALKQL---TRFDKDEIDNQVYSCLELSYKALRGDEIKSLFLLCGQF 403

Query: 60  IGNSFWFTDLFKYSMGLGIFQGVNRMVDARNKLYALVHELRDSCLLLEGDSSEQFSMHDV 119
           +      +DL KY++GL +F+G + + +ARN+L  LV EL+ SCLLLEGD   +  MHDV
Sbjct: 404 LTYDSSISDLLKYAIGLDLFKGRSTLEEARNRLRTLVDELKASCLLLEGDKDGRVKMHDV 463

Query: 120 VYDVVVSIACRDQHVFLVRNEVVWEWPDEDALKKCSAISLLNSSIHEVSEEFECLQLEFL 179
           V     S+A RD HV +V +E   EWP  D L++ +AISL    I ++    EC  L   
Sbjct: 464 VQSFAFSVASRDHHVLIVADEFK-EWPTSDVLQQYTAISLPYRKIPDLPAILECPNL--- 519

Query: 180 HISQNTFVEVN------IPDNIFKGMKTLRVIDLTRMRLFSLPSSIGLLANLQTLCLDQS 233
               N+F+ +N      IPDN F+ MK L+V+DLTR+ L  LPSS+  L NLQTLCLD  
Sbjct: 520 ----NSFILLNKDPSLQIPDNFFREMKELKVLDLTRVNLSPLPSSLQFLENLQTLCLDGC 575

Query: 234 MLGDIAIIGKLKNLEILSFLNSDIVRLPGELGQLTKLRLLDLTDCLQLKFIVPNVLSSFT 293
           +L DI+I+G+LK L++LS ++SDIV LP E+G+LT+L LLDL++C +L+ I PNVLSS T
Sbjct: 576 VLEDISIVGELKKLKVLSLISSDIVCLPREIGKLTRLLLLDLSNCERLEVISPNVLSSLT 635

Query: 294 RLEELYM 300
           RLEELYM
Sbjct: 636 RLEELYM 642

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147865073|emb|CAN83232.1| hypothetical protein VITISV_021876 [Vitis vinifera]

 Score =  247 bits (631), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 135/302 (44%), Positives = 194/302 (64%), Gaps = 2/302 (0%)

Query: 1   ARALRNKSLHEWKNALRELQTPSVVNFEGVPAETYSSIELSFKYLKGEQLKKIFLLCSLI 60
           A+AL+NK++  WK+AL++L + +  N  G+  + YSS++LS+++L+G+++K +FLLC L 
Sbjct: 349 AKALKNKNVSIWKDALQQLNSQTSTNITGMETKVYSSLKLSYEHLEGDEVKSLFLLCGLF 408

Query: 61  GNSFWFTDLFKYSMGLGIFQGVNRMVDARNKLYALVHELRDSCLLLEGDSSEQFSMHDVV 120
            N  +  DL KY MGL +FQG N + +A+N++  LV  L+ S LLLE   +    MHDVV
Sbjct: 409 SNYIYIRDLLKYGMGLRLFQGTNTLEEAKNRIDTLVDNLKSSNLLLETGHNAVVRMHDVV 468

Query: 121 YDVVVSIACRDQHVFLVRNEV--VWEWPDEDALKKCSAISLLNSSIHEVSEEFECLQLEF 178
             V + I+ +D HVF ++     V +WP  D L+K   ++     IHE+ E   C +L+ 
Sbjct: 469 RSVALDISSKDHHVFTLQQTTGRVEKWPRIDELQKVIWVNQDECDIHELPEGLVCPKLKL 528

Query: 179 LHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPSSIGLLANLQTLCLDQSMLGDI 238
                 T   V IP+  F+GMK L+V+D T+M L SLPSS+  LANLQTL L    LGDI
Sbjct: 529 FICCLKTNSAVKIPNTFFEGMKQLQVLDFTQMHLPSLPSSLQCLANLQTLLLYGCKLGDI 588

Query: 239 AIIGKLKNLEILSFLNSDIVRLPGELGQLTKLRLLDLTDCLQLKFIVPNVLSSFTRLEEL 298
            II +LK LEILS ++SDI +LP E+ QLT LRLLDL+D   +K I   V+SS ++LE+L
Sbjct: 589 GIITELKKLEILSLIDSDIEQLPREIAQLTHLRLLDLSDSSTIKVIPSGVISSLSQLEDL 648

Query: 299 YM 300
            M
Sbjct: 649 CM 650

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255574526|ref|XP_002528174.1| Disease resistance protein RFL1, putative [Ricinus communis] gi|223532386|gb|EEF34181.1| Disease resistance protein RFL1, putative [Ricinus communis]

 Score =  244 bits (624), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 137/302 (45%), Positives = 199/302 (65%), Gaps = 7/302 (2%)

Query: 1   ARALRNKSLHEWKNALRELQTPSVVNFEGVPAETYSSIELSFKYLKGEQLKKIFLLCSLI 60
           A+AL+ K+L  WKNA +E+   S V+ +GV  + +S++ELS+ +L   +++ +FLLC L+
Sbjct: 342 AKALKGKNLSVWKNASKEI---SKVD-DGVQGKLFSALELSYNHLDDNEVRSLFLLCGLL 397

Query: 61  GNS-FWFTDLFKYSMGLGIFQGVNRMVDARNKLYALVHELRDSCLLLEGDSSEQFSMHDV 119
           G S     DL KYS+GLG+      +  AR +++A++ EL+ SCLLL+G+ +    +HD+
Sbjct: 398 GKSDIRIQDLLKYSIGLGLLYDTRTVDYARRRVHAMISELKSSCLLLDGEMNGFVKIHDL 457

Query: 120 VYDVVVSIACRDQHVFLVRNEVVWE-WPDEDALKKCSAISLLNSSIHEVSEEFECLQLEF 178
           + D  VSIA R+Q VF + N +  E WPDEDALK C+ ISL   ++ ++ E  E   LEF
Sbjct: 458 IQDFAVSIAYREQQVFTINNYIRLEVWPDEDALKSCTRISLPCLNVVKLPEVLESPNLEF 517

Query: 179 LHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPSSIGLLANLQTLCLDQSMLGDI 238
           L +S      + IP + F+G+  L+V+D   M   SLP S+G L +L+TLCLD  +L DI
Sbjct: 518 LLLSTEE-PSLRIPGSFFQGIPILKVLDFCGMSFSSLPPSLGCLEHLRTLCLDHCLLHDI 576

Query: 239 AIIGKLKNLEILSFLNSDIVRLPGELGQLTKLRLLDLTDCLQLKFIVPNVLSSFTRLEEL 298
           AIIG+LK LEIL+F +SDIV LP E+G+L++L+LLDL+ C +L     NVLS    LEEL
Sbjct: 577 AIIGELKKLEILTFAHSDIVELPREIGELSRLKLLDLSHCSKLNVFPANVLSRLCLLEEL 636

Query: 299 YM 300
           YM
Sbjct: 637 YM 638

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	300
TAIR|locus:2131689	919	AT4G27220 [Arabidopsis thalian	0.846	0.276	0.270	4.1e-20
TAIR|locus:2136447	985	AT4G27190 [Arabidopsis thalian	0.85	0.258	0.270	8.8e-19
TAIR|locus:2201996	889	RPS5 "AT1G12220" [Arabidopsis	0.806	0.272	0.299	2.4e-17
TAIR|locus:2166320	888	AT5G63020 [Arabidopsis thalian	0.82	0.277	0.302	7.4e-16
TAIR|locus:2197739	762	AT1G61300 [Arabidopsis thalian	0.816	0.321	0.295	6.1e-15
TAIR|locus:2005517	909	RPS2 "RESISTANT TO P. SYRINGAE	0.783	0.258	0.277	7.9e-15
TAIR|locus:2034765	884	AT1G12290 [Arabidopsis thalian	0.813	0.276	0.298	5.4e-14
TAIR|locus:2031356	884	AT1G63360 [Arabidopsis thalian	0.83	0.281	0.271	5.4e-14
TAIR|locus:2201986	885	RFL1 "AT1G12210" [Arabidopsis	0.736	0.249	0.293	1.2e-13
TAIR|locus:2008440	899	AT1G61180 [Arabidopsis thalian	0.786	0.262	0.299	9.5e-13

TAIR|locus:2131689 AT4G27220 [Arabidopsis thaliana (taxid:3702)]

 Score = 250 (93.1 bits), Expect = 4.1e-20, P = 4.1e-20
 Identities = 73/270 (27%), Positives = 134/270 (49%)

Query:     2 RALRNKSLHE-WKNALRELQ--TPSVVNFEGVPAETYSSIELSFKYLKGEQLKKIFLLCS 58
             R LR K   E WK+ L  L+   PS+   E +    + +++LS+ +L+ + +K  FL C+
Sbjct:   317 RTLRGKPQVEVWKHTLNLLKRSAPSIDTEEKI----FGTLKLSYDFLQ-DNMKSCFLFCA 371

Query:    59 LIGNSFWF--TDLFKYSMGLGIFQGVNRMVDARNKLYALVHELRDSCLLLEGDSSEQFSM 116
             L    +    ++L  Y +  G+  G +   D  N+   LV  L+DSCLL +GDS +   M
Sbjct:   372 LFPEDYSIKVSELIMYWVAEGLLDGQHHYEDMMNEGVTLVERLKDSCLLEDGDSCDTVKM 431

Query:   117 HDVVYDVVV-SIACRDQ--HVFLVRNEVVWEWPDEDALKKCSAISLLNSSIHEVSEE-FE 172
             HDVV D  +  ++ + +  H  ++    + E+P +  +     +SL+ + +  +     E
Sbjct:   432 HDVVRDFAIWFMSSQGEGFHSLVMAGRGLIEFPQDKFVSSVQRVSLMANKLERLPNNVIE 491

Query:   173 CLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPSSIGLLANLQTLCLDQ 232
              ++   L +  N+ V+  +P+   +    LR++DL+ +R+ +LP S   L +L++L L  
Sbjct:   492 GVETLVLLLQGNSHVK-EVPNGFLQAFPNLRILDLSGVRIRTLPDSFSNLHSLRSLVLRN 550

Query:   233 -SMLGDIAIIGKLKNLEILSFLNSDIVRLP 261
                L ++  +  L  L+ L    S I  LP
Sbjct:   551 CKKLRNLPSLESLVKLQFLDLHESAIRELP 580

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2136447 AT4G27190 [Arabidopsis thaliana (taxid:3702)]

 Score = 238 (88.8 bits), Expect = 8.8e-19, P = 8.8e-19
 Identities = 73/270 (27%), Positives = 135/270 (50%)

Query:     3 ALRNK-SLHEWKNALRELQTPSVVNFEGVPAETYSSIELSFKYLKGEQLKKIFLLCSLIG 61
             A+R K ++  W + L +L + SV   + +  + +  ++LS+ +L+ ++ K  FLLC+L  
Sbjct:   348 AMRGKKNVKLWNHVLSKL-SKSVPWIKSIEEKIFQPLKLSYDFLE-DKAKFCFLLCALFP 405

Query:    62 NSFWF--TDLFKYSMGLGIFQGVNRMVDARNKLYALVHELRDSCLLLEGDSSEQFSMHDV 119
               +    T++ +Y M  G  + +    D+ N+    V  L+D CLL +GD  +   MHDV
Sbjct:   406 EDYSIEVTEVVRYWMAEGFMEELGSQEDSMNEGITTVESLKDYCLLEDGDRRDTVKMHDV 465

Query:   120 VYDV---VVSIACRDQHVFLVRNEVVWEWPDEDALKKCSAISLLNS---SIHEVSEEFEC 173
             V D    ++S +  D H  ++    + +   +        +SL+N+   S+ ++ EEF C
Sbjct:   466 VRDFAIWIMSSSQDDSHSLVMSGTGLQDIRQDKLAPSLRRVSLMNNKLESLPDLVEEF-C 524

Query:   174 LQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPS-SIGLLANLQTLCL-D 231
             ++   L + Q  F+   +P    +   TLR+++L+  R+ S PS S+  L +L +L L D
Sbjct:   525 VKTSVL-LLQGNFLLKEVPIGFLQAFPTLRILNLSGTRIKSFPSCSLLRLFSLHSLFLRD 583

Query:   232 QSMLGDIAIIGKLKNLEILSFLNSDIVRLP 261
                L  +  +  L  LE+L    + I+  P
Sbjct:   584 CFKLVKLPSLETLAKLELLDLCGTHILEFP 613

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2201996 RPS5 "AT1G12220" [Arabidopsis thaliana (taxid:3702)]

 Score = 224 (83.9 bits), Expect = 2.4e-17, P = 2.4e-17
 Identities = 80/267 (29%), Positives = 131/267 (49%)

Query:     7 KSLHEWKNALRELQTPSVVNFEGVPAETYSSIELSFKYLKGEQLKKIFLLCSLIGNSFWF 66
             +++HEW +A+ ++ T S ++F G+  E    ++ S+  L GE +K  FL CSL    +  
Sbjct:   366 RTVHEWCHAI-DVLTSSAIDFSGMEDEILHVLKYSYDNLNGELMKSCFLYCSLFPEDYLI 424

Query:    67 TD--LFKYSMGLGIF---QGVNRMVDARNKLYALVHELRDSCLLLEGDSSEQ-FSMHDVV 120
                 L  Y +  G     +G  R +   N+ Y ++  L  +CLLLE + ++    MHDVV
Sbjct:   425 DKEGLVDYWISEGFINEKEGRERNI---NQGYEIIGTLVRACLLLEEERNKSNVKMHDVV 481

Query:   121 YDVVVSIAC---RDQHVFLVRNEV-VWEWPDEDALKKCSAISLLNSSIHEVSEEFECLQL 176
              ++ + I+    + +   +VR  V + E P          ISL+N+ I E+ +  EC  L
Sbjct:   482 REMALWISSDLGKQKEKCIVRAGVGLREVPKVKDWNTVRKISLMNNEIEEIFDSHECAAL 541

Query:   177 EFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMR-LFSLPSSIGLLA-----NLQTLCL 230
               L + +N  V+++     F+ M  L V+DL+  + L  LP  I  LA     NL   C+
Sbjct:   542 TTLFLQKNDVVKISA--EFFRCMPHLVVLDLSENQSLNELPEEISELASLRYFNLSYTCI 599

Query:   231 DQSMLGDIAIIGKL--KNLEILSFLNS 255
              Q  +G +  + KL   NLE +S L S
Sbjct:   600 HQLPVG-LWTLKKLIHLNLEHMSSLGS 625

GO:0009626 "plant-type hypersensitive response" evidence=IMP

GO:0006952 "defense response" evidence=IMP;TAS

GO:0009816 "defense response to bacterium, incompatible interaction" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0008219 "cell death" evidence=IMP

GO:0038023 "signaling receptor activity" evidence=IMP

GO:0000166 "nucleotide binding" evidence=IMP

GO:0005622 "intracellular" evidence=ISS

TAIR|locus:2166320 AT5G63020 [Arabidopsis thaliana (taxid:3702)]

 Score = 210 (79.0 bits), Expect = 7.4e-16, P = 7.4e-16
 Identities = 79/261 (30%), Positives = 134/261 (51%)

Query:     7 KSLHEWKNALRELQTPSVVNFEGVPAETYSSIELSFKYLKGEQLKKIFLLCSLI--GNSF 64
             +++ EW++A+ ++ T S   F G+  E    ++ S+  LK EQLK  F  C+L    ++ 
Sbjct:   364 RTVQEWRSAI-DVLTSSAAEFSGMEDEILPILKYSYDNLKSEQLKLCFQYCALFPEDHNI 422

Query:    65 WFTDLFKYSMGLGIFQGVNRMVDARNKLYALVHELRDSCLLLEGDSSEQFSMHDVVYDVV 124
                DL  Y +G G F   N+   A N+ Y ++  L  SCLL+E ++ E   MHDVV ++ 
Sbjct:   423 EKNDLVDYWIGEG-FIDRNKG-KAENQGYEIIGILVRSCLLME-ENQETVKMHDVVREMA 479

Query:   125 VSIAC---RDQHVFLVRNEVVWE-WPDEDALKKCSAISLLNSSIHEVSEEFECLQLEFLH 180
             + IA    + +  F+V+  +     P+ +  K    +SL+ ++I  + +  E  QL  L 
Sbjct:   480 LWIASDFGKQKENFIVQAGLQSRNIPEIEKWKVARRVSLMFNNIESIRDAPESPQLITLL 539

Query:   181 ISQNTFVEVNIPDNIFKGMKTLRVIDLTRMR-LFSLPSSIGLLANLQTLCLDQSMLGDIA 239
             + +N F+  +I  + F+ M  L V+DL+  R L  LP+ I    +LQ L L ++ +  I 
Sbjct:   540 LRKN-FLG-HISSSFFRLMPMLVVLDLSMNRDLRHLPNEISECVSLQYLSLSRTRIR-IW 596

Query:   240 IIGKLKNLEILSFLNSDIVRL 260
               G L  L  L +LN +  R+
Sbjct:   597 PAG-LVELRKLLYLNLEYTRM 616

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2197739 AT1G61300 [Arabidopsis thaliana (taxid:3702)]

 Score = 205 (77.2 bits), Expect = 6.1e-15, P = 6.1e-15
 Identities = 77/261 (29%), Positives = 133/261 (50%)

Query:     9 LHEWKNALRELQTPSVVNFEGVPAETYSSIELSFKYLKGEQLKKIFLLCSLI--GNSFWF 66
             + EW++A+ ++ T S   F  +  +    ++ S+  L  E +K  FL C+L    +  + 
Sbjct:   253 VQEWEHAI-DVLTRSAAEFSNMGNKILPILKYSYDSLGDEHIKSCFLYCALFPEDDEIYN 311

Query:    67 TDLFKYSMGLGIFQGVNRMVD-ARNKLYALVHELRDSCLLLEGDSSEQFSMHDVVYDVVV 125
               L  Y +  G F G ++++  ARNK Y ++  L  + LL +   +E   MHDVV ++ +
Sbjct:   312 EKLIDYWICEG-FIGEDQVIKRARNKGYEMLGTLTLANLLTKV-GTEHVVMHDVVREMAL 369

Query:   126 SIAC---RDQHVFLVRNEV-VWEWPDEDALKKCSAISLLNSSIHEVSEEFECLQLEFLHI 181
              IA    + +  F+VR  V + E P+         +SL+++ I E++ E +C +L  L +
Sbjct:   370 WIASDFGKQKENFVVRARVGLHERPEAKDWGAVRRMSLMDNHIEEITCESKCSELTTLFL 429

Query:   182 SQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFS-LPSSIGLLANLQTLCLDQSMLGDIAI 240
               N     N+     + M+ L V+DL+  R F+ LP  I  L +LQ L L  + +  + +
Sbjct:   430 QSNQLK--NLSGEFIRYMQKLVVLDLSYNRDFNKLPEQISGLVSLQFLDLSNTSIKQLPV 487

Query:   241 IGKLKNLEILSFLN-SDIVRL 260
              G LK L+ L+FLN +  VRL
Sbjct:   488 -G-LKKLKKLTFLNLAYTVRL 506

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2005517 RPS2 "RESISTANT TO P. SYRINGAE 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 205 (77.2 bits), Expect = 7.9e-15, P = 7.9e-15
 Identities = 69/249 (27%), Positives = 122/249 (48%)

Query:    11 EWKNALRELQTPSVVNFEGVPAETYSSIELSFKYLKGEQLKKIFLLCSLIG--NSFWFTD 68
             EW +A  E+ T      +G+    ++ ++ S+  L+ + L+  FL C+L    +S     
Sbjct:   367 EWIHA-SEVLTRFPAEMKGMNY-VFALLKFSYDNLESDLLRSCFLYCALFPEEHSIEIEQ 424

Query:    69 LFKYSMGLGIFQGVNRMVDARNKLYALVHELRDSCLLLEGDSSEQFSMHDVVYDVVVSIA 128
             L +Y +G G F   +  V+   K Y L+ +L+ +CLL  GD   Q  MH+VV    + +A
Sbjct:   425 LVEYWVGEG-FLTSSHGVNTIYKGYFLIGDLKAACLLETGDEKTQVKMHNVVRSFALWMA 483

Query:   129 CRD---QHVFLVRNEVVW-EWPDEDALKKCSAISLLNSSIHEVSEEFECLQLEFLHISQN 184
                   + + LV   +   E P  +  ++   ISLL++ I  + E+  C +L  L + QN
Sbjct:   484 SEQGTYKELILVEPSMGHTEAPKAENWRQALVISLLDNRIQTLPEKLICPKLTTLMLQQN 543

Query:   185 TFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPSSIGLLANLQTLCLDQSMLG----DIAI 240
             + ++  IP   F  M  LRV+DL+   +  +P SI  L  L  L +  + +     ++  
Sbjct:   544 SSLK-KIPTGFFMHMPVLRVLDLSFTSITEIPLSIKYLVELYHLSMSGTKISVLPQELGN 602

Query:   241 IGKLKNLEI 249
             + KLK+L++
Sbjct:   603 LRKLKHLDL 611

GO:0000166 "nucleotide binding" evidence=IEA

GO:0006952 "defense response" evidence=ISS;TAS

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0009626 "plant-type hypersensitive response" evidence=IMP

GO:0016045 "detection of bacterium" evidence=RCA;IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005886 "plasma membrane" evidence=IDA

GO:0042742 "defense response to bacterium" evidence=RCA;IMP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0045087 "innate immune response" evidence=RCA

GO:0050776 "regulation of immune response" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

GO:0051707 "response to other organism" evidence=RCA

TAIR|locus:2034765 AT1G12290 [Arabidopsis thaliana (taxid:3702)]

 Score = 201 (75.8 bits), Expect = 5.4e-14, P = 5.4e-14
 Identities = 77/258 (29%), Positives = 118/258 (45%)

Query:     7 KSLHEWKNALRELQTPSVVNFEGVPAETYSSIELSFKYLKGEQLKKIFLLCSLIGNSFWF 66
             K+  EW  A+ ++ T    NF  V       ++ S+  L+ E +K  FL CSL       
Sbjct:   365 KTTQEWDRAV-DVSTTYAANFGAVKERILPILKYSYDNLESESVKTCFLYCSLFPEDDLI 423

Query:    67 TD--LFKYSMGLGIFQGVNRMVDARNKLYALVHELRDSCLLLEG---DSSEQFSMHDVVY 121
                 L  Y +  G   G      A  + Y ++  L  + LL+EG   ++     MHDVV 
Sbjct:   424 EKERLIDYWICEGFIDGDENKKGAVGEGYEILGTLVCASLLVEGGKFNNKSYVKMHDVVR 483

Query:   122 DVVVSIAC---RDQHVFLVRNEV-VWEWPDEDALKKCSAISLLNSSIHEVSEEFECLQLE 177
             ++ + IA    + +   +VR    + E P     K  S +SL+N+ I E+    EC +L 
Sbjct:   484 EMALWIASDLRKHKDNCIVRAGFRLNEIPKVKDWKVVSRMSLVNNRIKEIHGSPECPKLT 543

Query:   178 FLHISQNTFVEVNIPDNIFKGMKTLRVIDLT-RMRLFSLPSSIGLLANLQTLCLDQSMLG 236
              L +  N  + VNI    F+ M  L V+DL+  + L  LP  I  L +L+ L L  S +G
Sbjct:   544 TLFLQDNRHL-VNISGEFFRSMPRLVVLDLSWNVNLSGLPDQISELVSLRYLDLSYSSIG 602

Query:   237 DIAIIGKLKNLEILSFLN 254
              + + G LK L+ L  LN
Sbjct:   603 RLPV-GLLK-LKKLMHLN 618

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

TAIR|locus:2031356 AT1G63360 [Arabidopsis thaliana (taxid:3702)]

 Score = 201 (75.8 bits), Expect = 5.4e-14, P = 5.4e-14
 Identities = 73/269 (27%), Positives = 127/269 (47%)

Query:     7 KSLHEWKNALRELQTPSVVNFEGVPAETYSSIELSFKYLKGEQLKKIFLLCSLIGNSFWF 66
             +++ EW++A+  L + +   F G+  +    ++ S+  LKGEQ+K   L C+L       
Sbjct:   362 RTIQEWRHAIHVLNSYAA-EFIGMEDKVLPLLKYSYDNLKGEQVKSSLLYCALYPEDAKI 420

Query:    67 T--DLFKYSMGLGIFQGVNRMVDARNKLYALVHELRDSCLLLE---GDSSEQFSMHDVVY 121
                DL ++ +   I  G   +  A +K Y ++  L  + LL+E   GD      MHDVV 
Sbjct:   421 LKEDLIEHWICEEIIDGSEGIEKAEDKGYEIIGCLVRASLLMEWDDGDGRRAVCMHDVVR 480

Query:   122 DVVVSIACR---DQHVFLVRNEV-VWEWPDEDALKKCSAISLLNSSIHEVSEEFECLQLE 177
             ++ + IA      +  F+VR  V V E P          +SL+ + IH +   +EC++L 
Sbjct:   481 EMALWIASELGIQKEAFIVRAGVGVREIPKIKNWNVVRRMSLMENKIHHLVGSYECMELT 540

Query:   178 FLHISQNTFVEVN-----IPDNIFKGMKTLRVIDLTRMR-LFSLPSSIGLLANLQTLCLD 231
              L + +  +  +      I    F  M  L V+DL+  + LF LP  I  L +L+ L L 
Sbjct:   541 TLLLGKREYGSIRSQLKTISSEFFNCMPKLAVLDLSHNKSLFELPEEISNLVSLKYLNL- 599

Query:   232 QSMLGDIAIIGK-LKNLEILSFLNSDIVR 259
               +  +I+ + K ++ L+ +  LN +  R
Sbjct:   600 --LYTEISHLPKGIQELKKIIHLNLEYTR 626

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2201986 RFL1 "AT1G12210" [Arabidopsis thaliana (taxid:3702)]

 Score = 199 (75.1 bits), Expect = 1.2e-13, P = 1.2e-13
 Identities = 68/232 (29%), Positives = 115/232 (49%)

Query:     7 KSLHEWKNALRELQTPSVVNFEGVPAETYSSIELSFKYLKGEQLKKIFLLCSLIGNSFWF 66
             +++ EW++A  E+ T S  +F G+  E    ++ S+  L GE  K  FL CSL    F  
Sbjct:   366 RTIQEWRHAT-EVLT-SATDFSGMEDEILPILKYSYDSLNGEDAKSCFLYCSLFPEDFEI 423

Query:    67 TD--LFKYSMGLGIFQGVNRMVDARNKLYALVHELRDSCLLLEGDSSEQF-SMHDVVYDV 123
                 L +Y +  G  +       A N+ Y ++  L  S LLLEG   +   SMHD+V ++
Sbjct:   424 RKEMLIEYWICEGFIKEKQGREKAFNQGYDILGTLVRSSLLLEGAKDKDVVSMHDMVREM 483

Query:   124 VVSIAC---RDQHVFLVRNEV-VWEWPDEDALKKCSAISLLNSSIHEVSEEFECLQLEFL 179
              + I     + +   +V+  + + E P+ +  +    +SL+N++  ++    EC++L  L
Sbjct:   484 ALWIFSDLGKHKERCIVQAGIGLDELPEVENWRAVKRMSLMNNNFEKILGSPECVELITL 543

Query:   180 HISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFS-LPSSIGLLANLQTLCL 230
              + QN +  V+I    F+ M +L V+DL+     S LP  I  L +LQ L L
Sbjct:   544 FL-QNNYKLVDISMEFFRCMPSLAVLDLSENHSLSELPEEISELVSLQYLDL 594

GO:0005575 "cellular_component" evidence=ND

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0009617 "response to bacterium" evidence=ISS

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

TAIR|locus:2008440 AT1G61180 [Arabidopsis thaliana (taxid:3702)]

 Score = 193 (73.0 bits), Expect = 9.5e-13, P = 9.5e-13
 Identities = 77/257 (29%), Positives = 131/257 (50%)

Query:     9 LHEWKNALRELQTPSVVNFEGVPAETYSSIELSFKYLKGEQLKKIFLLCSLI--GNSFWF 66
             + EW++A+    T S   F  +  +    ++ S+  L  E +K  FL C+L       + 
Sbjct:   364 VQEWEHAIHVFNT-SAAEFSDMQNKILPILKYSYDSLGDEHIKSCFLYCALFPEDGEIYN 422

Query:    67 TDLFKYSMGLGIFQGVNRMVD-ARNKLYALVHELRDSCLLLEGDSSEQFSMHDVVYDVVV 125
               L  Y +  G F G ++++  ARNK YA++  L  + LL +   +    MHDVV ++ +
Sbjct:   423 EKLIDYWICEG-FIGEDQVIKRARNKGYAMLGTLTRANLLTKV-GTYYCVMHDVVREMAL 480

Query:   126 SIAC---RDQHVFLVRNEV-VWEWP---DEDALKKCSAISLLNSSIHEVSEEFECLQLEF 178
              IA    + +  F+V+  V + E P   D  A++K   +SL+++ I E++ E +C +L  
Sbjct:   481 WIASDFGKQKENFVVQAGVGLHEIPKVKDWGAVRK---MSLMDNDIEEITCESKCSELTT 537

Query:   179 LHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFS-LPSSIGLLANLQTLCLDQSMLGD 237
             L +  N     N+P    + M+ L V+DL+  R F+ LP  I  L +LQ L L  + +  
Sbjct:   538 LFLQSNKLK--NLPGAFIRYMQKLVVLDLSYNRDFNKLPEQISGLVSLQFLDLSNTSIEH 595

Query:   238 IAIIGKLKNLEILSFLN 254
             + I G LK L+ L+FL+
Sbjct:   596 MPI-G-LKELKKLTFLD 610

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00050016 cc-nbs-lrr resistance protein (1144 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	300
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	5e-06
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-04
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	4e-04
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	0.003

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 47.3 bits (112), Expect = 5e-06
 Identities = 41/144 (28%), Positives = 64/144 (44%), Gaps = 4/144 (2%)

Query: 158 SLLNSSIHEVSEEFECLQLEFLHISQNTFVEVN-IPDNIFKGMKTLRVIDLTRMRLFSLP 216
           SL  +     S   E L+L  L         +  IP  I      L+ +DL+  ++ SLP
Sbjct: 97  SLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLP 156

Query: 217 SSIGLLANLQTLCLDQSMLGDI-AIIGKLKNLEILSFLNSDIVRLPGELGQLTKLRLLDL 275
           S +  L NL+ L L  + L D+  ++  L NL  L    + I  LP E+  L+ L  LDL
Sbjct: 157 SPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDL 216

Query: 276 TDCLQLKFIVPNVLSSFTRLEELY 299
           ++   ++    + LS+   L  L 
Sbjct: 217 SNNSIIEL--LSSLSNLKNLSGLE 238

Length = 394

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 43.3 bits (102), Expect = 1e-04
 Identities = 37/113 (32%), Positives = 58/113 (51%), Gaps = 5/113 (4%)

Query: 191 IPDNIFKGMKTLRVIDLTRMRLFSLPSSIGLLANLQTLCLDQSML-GDI-AIIGKLKNLE 248
           IPD+IF    +LR ++L+    F+     G + NL+TL L  +ML G+I   IG   +L+
Sbjct: 109 IPDDIFTTSSSLRYLNLSNNN-FTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLK 167

Query: 249 ILSFLNSDIV-RLPGELGQLTKLRLLDLTDCLQLKFIVPNVLSSFTRLEELYM 300
           +L    + +V ++P  L  LT L  L L    QL   +P  L     L+ +Y+
Sbjct: 168 VLDLGGNVLVGKIPNSLTNLTSLEFLTLASN-QLVGQIPRELGQMKSLKWIYL 219

Length = 968

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 41.1 bits (96), Expect = 4e-04
 Identities = 36/147 (24%), Positives = 53/147 (36%), Gaps = 26/147 (17%)

Query: 175 QLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPSSIGLLANLQTLCLDQSM 234
            L+ L +S N    +  P      +K L +       L  LP  +  L+NL  L L  + 
Sbjct: 141 NLKELDLSDNKIESLPSPLRNLPNLKNLDLSFN---DLSDLPKLLSNLSNLNNLDLSGNK 197

Query: 235 LGDI-AIIGKLKNLEILSFLNSDIVRLPGELGQLTKLRLLDLTDCLQLKFIV-------- 285
           + D+   I  L  LE L   N+ I+ L   L  L  L  L+L    +L+ +         
Sbjct: 198 ISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLEL-SNNKLEDLPESIGNLSN 256

Query: 286 -------------PNVLSSFTRLEELY 299
                         + L S T L EL 
Sbjct: 257 LETLDLSNNQISSISSLGSLTNLRELD 283

Length = 394

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 38.4 bits (89), Expect = 0.003
 Identities = 34/129 (26%), Positives = 56/129 (43%), Gaps = 7/129 (5%)

Query: 174 LQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPSSIGLLA-NLQTLCLDQ 232
           L L  L ++ N    +    +    +  L  +DL    +  +P  IGLL  NL+ L L  
Sbjct: 93  LPLPSLDLNLN---RLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSD 149

Query: 233 SMLGDIAI-IGKLKNLEILSFLNSDIVRLPGELGQLTKLRLLDLTDCLQLKFIVPNVLSS 291
           + +  +   +  L NL+ L    +D+  LP  L  L+ L  LDL+        +P  +  
Sbjct: 150 NKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGN--KISDLPPEIEL 207

Query: 292 FTRLEELYM 300
            + LEEL +
Sbjct: 208 LSALEELDL 216

Length = 394

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	300
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	100.0
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.95
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.77
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.75
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.6
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.6
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.55
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.53
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.39
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.39
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.36
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.33
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.3
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.28
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.26
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.22
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.22
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.21
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.18
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.13
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.12
PF00931	287	NB-ARC: NB-ARC domain; InterPro: IPR002182 This is	99.1
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.08
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.07
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.03
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.0
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.0
PLN03150	623	hypothetical protein; Provisional	98.89
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.88
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.87
PLN03150	623	hypothetical protein; Provisional	98.83
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.81
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.8
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.79
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.78
KOG4237	498	consensus Extracellular matrix protein slit, conta	98.75
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.68
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.52
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.45
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.44
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.4
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.38
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	98.38
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.34
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.28
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.24
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.23
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.22
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.19
PRK15386	426	type III secretion protein GogB; Provisional	98.15
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.02
PRK15386	426	type III secretion protein GogB; Provisional	97.96
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.79
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	97.72
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	97.66
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	97.47
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.46
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	97.42
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.38
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.37
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.22
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.14
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.72
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.7
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	96.62
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.54
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	95.94
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	95.69
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	95.31
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	95.26
KOG0473	326	consensus Leucine-rich repeat protein [Function un	95.19
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	94.99
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	94.23
smart00370	26	LRR Leucine-rich repeats, outliers.	94.23
KOG1947	482	consensus Leucine rich repeat proteins, some prote	93.69
KOG0473	326	consensus Leucine-rich repeat protein [Function un	93.5
KOG3864	221	consensus Uncharacterized conserved protein [Funct	93.47
smart00370	26	LRR Leucine-rich repeats, outliers.	93.2
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	93.2
KOG3864	221	consensus Uncharacterized conserved protein [Funct	91.65
KOG4341	483	consensus F-box protein containing LRR [General fu	90.9
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	87.2
KOG1947	482	consensus Leucine rich repeat proteins, some prote	85.21
KOG4341	483	consensus F-box protein containing LRR [General fu	81.67

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=100.00  E-value=2.2e-44  Score=340.60  Aligned_cols=275  Identities=28%  Similarity=0.454  Sum_probs=240.9

Q ss_pred             CcccCCC-ChhHHHHHHHHhcCCCCCCCCCCCcccccceeeccccCCchhHHHHHHHhhhcCCCCCHH--HHHhhhhhcc
Q 037969            1 ARALRNK-SLHEWKNALRELQTPSVVNFEGVPAETYSSIELSFKYLKGEQLKKIFLLCSLIGNSFWFT--DLFKYSMGLG   77 (300)
Q Consensus         1 g~~L~~k-~~~~W~~~l~~l~~~~~~~~~~~~~~i~~~l~lsy~~L~~~~lk~cfl~~a~fp~~~~~~--~Li~~w~aeg   77 (300)
                      |+.|+.| +.++|+++.+.+......+.+++++.|.++|++|||+||++ +|.||+|||.||+||.|.  +|+..|||||
T Consensus       363 G~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~~iLklSyd~L~~~-lK~CFLycalFPED~~I~~e~Li~yWiaEG  441 (889)
T KOG4658|consen  363 GGLLACKKTVQEWRRALNVLKSSLAADFSGMEESILPILKLSYDNLPEE-LKSCFLYCALFPEDYEIKKEKLIEYWIAEG  441 (889)
T ss_pred             HHHhcCCCcHHHHHHHHccccccccCCCCchhhhhHHhhhccHhhhhHH-HHHHHHhhccCCcccccchHHHHHHHHhcc
Confidence            6789999 99999999999988766666777888999999999999977 999999999999999999  9999999999


Q ss_pred             cccCchhHHHHHHHHHHHHHHHHHhcccccCC---CCCcEEechhHHHHHHHHhh-----cCCcEEEEeccccccCCCcc
Q 037969           78 IFQGVNRMVDARNKLYALVHELRDSCLLLEGD---SSEQFSMHDVVYDVVVSIAC-----RDQHVFLVRNEVVWEWPDED  149 (300)
Q Consensus        78 ~i~~~~~~e~~~~~~~~~~~~L~~~~~~~~~~---~~~~~~~hdl~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~  149 (300)
                      |+++....+.+++.+++++.+|++++++....   ...+|+|||+++++|..++.     +++ .....+.+..+.|...
T Consensus       442 fi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~~~~~~~kmHDvvRe~al~ias~~~~~~e~-~iv~~~~~~~~~~~~~  520 (889)
T KOG4658|consen  442 FIDPLDGGETAEDVGYDYIEELVRASLLIEERDEGRKETVKMHDVVREMALWIASDFGKQEEN-QIVSDGVGLSEIPQVK  520 (889)
T ss_pred             CcCccccccchhcchHHHHHHHHHHHHHhhcccccceeEEEeeHHHHHHHHHHhccccccccc-eEEECCcCcccccccc
Confidence            99985556668999999999999999998765   44779999999999999998     566 3333334555567667


Q ss_pred             ccCCccEEEeecCCCcccCccccCCCccEEecccCc--cccccCchhHHhcCCcccEEEeeCC-cCCcCCcccccCCCCc
Q 037969          150 ALKKCSAISLLNSSIHEVSEEFECLQLEFLHISQNT--FVEVNIPDNIFKGMKTLRVIDLTRM-RLFSLPSSIGLLANLQ  226 (300)
Q Consensus       150 ~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~--~~~~~l~~~~~~~l~~L~~L~l~~~-~~~~lp~~i~~l~~L~  226 (300)
                      .....|++++.++.+..++....+++|++|-+.+|.  +  ..++..+|..++.|++|||++| .+.++|+.|+.|.+||
T Consensus       521 ~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l--~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~Lr  598 (889)
T KOG4658|consen  521 SWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWL--LEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLR  598 (889)
T ss_pred             chhheeEEEEeccchhhccCCCCCCccceEEEeecchhh--hhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhh
Confidence            778899999999999888888888899999999986  5  7788888899999999999976 5678999999999999


Q ss_pred             EEEccCCCCCC-cccccCCCCcCEEEccCC-CCCCCchhhcCCCCCCEEeccCCC
Q 037969          227 TLCLDQSMLGD-IAIIGKLKNLEILSFLNS-DIVRLPGELGQLTKLRLLDLTDCL  279 (300)
Q Consensus       227 ~L~l~~~~l~~-p~~~~~l~~L~~L~l~~~-~l~~lp~~~~~l~~L~~L~l~~~~  279 (300)
                      ||+++++.++. |.++++|+.|.+|++..+ .+..+|.....|++|++|.+....
T Consensus       599 yL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~  653 (889)
T KOG4658|consen  599 YLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA  653 (889)
T ss_pred             cccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc
Confidence            99999999999 999999999999999998 556667667779999999997764

>PLN03210 Resistant to P

Probab=99.95  E-value=9.2e-28  Score=237.79  Aligned_cols=272  Identities=19%  Similarity=0.268  Sum_probs=199.3

Q ss_pred             CcccCCCChhHHHHHHHHhcCCCCCCCCCCCcccccceeeccccCCchhHHHHHHHhhhcCCCCCHHHHHhhhhhccccc
Q 037969            1 ARALRNKSLHEWKNALRELQTPSVVNFEGVPAETYSSIELSFKYLKGEQLKKIFLLCSLIGNSFWFTDLFKYSMGLGIFQ   80 (300)
Q Consensus         1 g~~L~~k~~~~W~~~l~~l~~~~~~~~~~~~~~i~~~l~lsy~~L~~~~lk~cfl~~a~fp~~~~~~~Li~~w~aeg~i~   80 (300)
                      |+.|++|+..+|+.++++++...       +.+|.++|++||++|++++.|.||+||||||.+..++. +..|+|.+...
T Consensus       396 gs~L~~k~~~~W~~~l~~L~~~~-------~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~~-v~~~l~~~~~~  467 (1153)
T PLN03210        396 GSYLRGRDKEDWMDMLPRLRNGL-------DGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVND-IKLLLANSDLD  467 (1153)
T ss_pred             HHHHcCCCHHHHHHHHHHHHhCc-------cHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHHH-HHHHHHhcCCC
Confidence            67899999999999999987532       34599999999999986437999999999999987763 55677766543


Q ss_pred             CchhHHHHHHHHHHHHHHHHHhcccccCCCCCcEEechhHHHHHHHHhhcCC------cEEEEeccc-------------
Q 037969           81 GVNRMVDARNKLYALVHELRDSCLLLEGDSSEQFSMHDVVYDVVVSIACRDQ------HVFLVRNEV-------------  141 (300)
Q Consensus        81 ~~~~~e~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~hdl~~~~~~~~~~~~~------~~~~~~~~~-------------  141 (300)
                      ..           ..++.|+++++++..  .++++|||+++++|+.+++++.      .+. .....             
T Consensus       468 ~~-----------~~l~~L~~ksLi~~~--~~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l-~~~~di~~vl~~~~g~~~  533 (1153)
T PLN03210        468 VN-----------IGLKNLVDKSLIHVR--EDIVEMHSLLQEMGKEIVRAQSNEPGEREFL-VDAKDICDVLEDNTGTKK  533 (1153)
T ss_pred             ch-----------hChHHHHhcCCEEEc--CCeEEhhhHHHHHHHHHHHhhcCCCCcceeE-eCHHHHHHHHHhCcccce
Confidence            21           127788999999765  3579999999999999986542      111 11000             


Q ss_pred             ----------ccc--CC--CccccCCccEEEeecCCC-------cccCccc-cC-CCccEEecccCccccccCchhHHhc
Q 037969          142 ----------VWE--WP--DEDALKKCSAISLLNSSI-------HEVSEEF-EC-LQLEFLHISQNTFVEVNIPDNIFKG  198 (300)
Q Consensus       142 ----------~~~--~~--~~~~~~~l~~L~l~~~~~-------~~~~~~~-~~-~~L~~L~l~~~~~~~~~l~~~~~~~  198 (300)
                                ...  +.  ....+.+++.|.+..+..       ..+|..+ .+ ++|+.|.+.++..  ..+|..+  .
T Consensus       534 v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l--~~lP~~f--~  609 (1153)
T PLN03210        534 VLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPL--RCMPSNF--R  609 (1153)
T ss_pred             eeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCC--CCCCCcC--C
Confidence                      000  00  113456677776654432       1244433 33 4688888888887  7888765  4


Q ss_pred             CCcccEEEeeCCcCCcCCcccccCCCCcEEEccCCC-CCCcccccCCCCcCEEEccCC-CCCCCchhhcCCCCCCEEecc
Q 037969          199 MKTLRVIDLTRMRLFSLPSSIGLLANLQTLCLDQSM-LGDIAIIGKLKNLEILSFLNS-DIVRLPGELGQLTKLRLLDLT  276 (300)
Q Consensus       199 l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~-l~~p~~~~~l~~L~~L~l~~~-~l~~lp~~~~~l~~L~~L~l~  276 (300)
                      +.+|+.|++.++.+..+|..+..+++|++|+++++. +..++.++.+++|++|++++| .+..+|.+++++++|+.|+++
T Consensus       610 ~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~  689 (1153)
T PLN03210        610 PENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMS  689 (1153)
T ss_pred             ccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeCC
Confidence            688888888888888888888888889999988775 444556788888999999888 677888888888899999998


Q ss_pred             CCCCccccchhhhcCCCCCCeeeC
Q 037969          277 DCLQLKFIVPNVLSSFTRLEELYM  300 (300)
Q Consensus       277 ~~~~l~~lp~~~l~~L~~L~~L~l  300 (300)
                      +|..++.+|.. + ++++|+.|++
T Consensus       690 ~c~~L~~Lp~~-i-~l~sL~~L~L  711 (1153)
T PLN03210        690 RCENLEILPTG-I-NLKSLYRLNL  711 (1153)
T ss_pred             CCCCcCccCCc-C-CCCCCCEEeC
Confidence            88888888875 3 6777777754

syringae 6; Provisional

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.77  E-value=6.1e-21  Score=143.31  Aligned_cols=140  Identities=30%  Similarity=0.480  Sum_probs=104.4

Q ss_pred             cccCCccEEEeecCCCcccCccc-cCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCc--CCcccccCCCC
Q 037969          149 DALKKCSAISLLNSSIHEVSEEF-ECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFS--LPSSIGLLANL  225 (300)
Q Consensus       149 ~~~~~l~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~--lp~~i~~l~~L  225 (300)
                      ..+.+++.|.+.+|+++++|..+ .+++|+.|++.-|.+  ..+|.++ +.++.|.+||+.+|++.+  +|..+..+..|
T Consensus        53 a~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl--~~lprgf-gs~p~levldltynnl~e~~lpgnff~m~tl  129 (264)
T KOG0617|consen   53 AELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRL--NILPRGF-GSFPALEVLDLTYNNLNENSLPGNFFYMTTL  129 (264)
T ss_pred             HHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhh--hcCcccc-CCCchhhhhhccccccccccCCcchhHHHHH
Confidence            55666677777777776666655 677777777776666  6666665 667777777777776664  67666667777


Q ss_pred             cEEEccCCCCCC-cccccCCCCcCEEEccCCCCCCCchhhcCCCCCCEEeccCCCCccccchhhhcCCC
Q 037969          226 QTLCLDQSMLGD-IAIIGKLKNLEILSFLNSDIVRLPGELGQLTKLRLLDLTDCLQLKFIVPNVLSSFT  293 (300)
Q Consensus       226 ~~L~l~~~~l~~-p~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~l~~L~  293 (300)
                      +.|.+++|.++. |+.++++++||.|.++.|++-++|..++.++.|+.|++.+|+ +..+|++ ++++.
T Consensus       130 ralyl~dndfe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnr-l~vlppe-l~~l~  196 (264)
T KOG0617|consen  130 RALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNR-LTVLPPE-LANLD  196 (264)
T ss_pred             HHHHhcCCCcccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccce-eeecChh-hhhhh
Confidence            777777777776 788888888888888888888888888888888888888888 8888887 66543

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.75  E-value=2e-20  Score=140.53  Aligned_cols=153  Identities=27%  Similarity=0.393  Sum_probs=140.0

Q ss_pred             ccCCCccccCCccEEEeecCCCcccCccc-cCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCcCCccccc
Q 037969          143 WEWPDEDALKKCSAISLLNSSIHEVSEEF-ECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPSSIGL  221 (300)
Q Consensus       143 ~~~~~~~~~~~l~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~  221 (300)
                      ..++..-.++++++|.+++|++..+|+.+ .+.+|++|++.+|++  .++|.++ +.++.|+.|+++.|++..+|..+|.
T Consensus        24 ~~~~gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqi--e~lp~~i-ssl~klr~lnvgmnrl~~lprgfgs  100 (264)
T KOG0617|consen   24 EELPGLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQI--EELPTSI-SSLPKLRILNVGMNRLNILPRGFGS  100 (264)
T ss_pred             hhcccccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchh--hhcChhh-hhchhhhheecchhhhhcCccccCC
Confidence            34455556778899999999998888777 999999999999999  9999998 8999999999999999999999999


Q ss_pred             CCCCcEEEccCCCCCC---cccccCCCCcCEEEccCCCCCCCchhhcCCCCCCEEeccCCCCccccchhhhcCCCCCCee
Q 037969          222 LANLQTLCLDQSMLGD---IAIIGKLKNLEILSFLNSDIVRLPGELGQLTKLRLLDLTDCLQLKFIVPNVLSSFTRLEEL  298 (300)
Q Consensus       222 l~~L~~L~l~~~~l~~---p~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L  298 (300)
                      ++-|+.||+++|.+..   |..+.-++.|+.|.+++|.++-+|+.++++++|+.|.+.+|. +-++|++ ++.|+.|++|
T Consensus       101 ~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdnd-ll~lpke-ig~lt~lrel  178 (264)
T KOG0617|consen  101 FPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDND-LLSLPKE-IGDLTRLREL  178 (264)
T ss_pred             CchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCc-hhhCcHH-HHHHHHHHHH
Confidence            9999999999999876   788889999999999999999999999999999999999998 8899998 9999999887


Q ss_pred             eC
Q 037969          299 YM  300 (300)
Q Consensus       299 ~l  300 (300)
                      ++
T Consensus       179 hi  180 (264)
T KOG0617|consen  179 HI  180 (264)
T ss_pred             hc
Confidence            64

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.60  E-value=7e-15  Score=145.40  Aligned_cols=145  Identities=23%  Similarity=0.395  Sum_probs=62.3

Q ss_pred             cCCccEEEeecCCC-cccCccc-cCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCc-CCcccccCCCCcE
Q 037969          151 LKKCSAISLLNSSI-HEVSEEF-ECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFS-LPSSIGLLANLQT  227 (300)
Q Consensus       151 ~~~l~~L~l~~~~~-~~~~~~~-~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~-lp~~i~~l~~L~~  227 (300)
                      +++++.|++++|.+ ..+|..+ .+++|++|++++|.+ .+.+|..+ +++++|++|++++|.+.. +|..++++++|++
T Consensus       139 l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l-~~~~p~~~-~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~  216 (968)
T PLN00113        139 IPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVL-VGKIPNSL-TNLTSLEFLTLASNQLVGQIPRELGQMKSLKW  216 (968)
T ss_pred             cCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcc-cccCChhh-hhCcCCCeeeccCCCCcCcCChHHcCcCCccE
Confidence            34444444444444 2333333 444555555554443 12333332 444444444444444443 3444444444444


Q ss_pred             EEccCCCCCC--cccccCCCCcCEEEccCCCCC-CCchhhcCCCCCCEEeccCCCCccccchhhhcCCCCCCee
Q 037969          228 LCLDQSMLGD--IAIIGKLKNLEILSFLNSDIV-RLPGELGQLTKLRLLDLTDCLQLKFIVPNVLSSFTRLEEL  298 (300)
Q Consensus       228 L~l~~~~l~~--p~~~~~l~~L~~L~l~~~~l~-~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L  298 (300)
                      |++++|.+..  |..++.+++|++|++++|.+. .+|..++++++|++|++++|...+.+|.. +..+++|++|
T Consensus       217 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L  289 (968)
T PLN00113        217 IYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPS-IFSLQKLISL  289 (968)
T ss_pred             EECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchh-HhhccCcCEE
Confidence            4444444432  344444444444444444333 34444444444444444444422333332 3344444433

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.60  E-value=6.2e-15  Score=145.78  Aligned_cols=147  Identities=26%  Similarity=0.368  Sum_probs=116.1

Q ss_pred             ccCCccEEEeecCCCc-ccCccccCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCc-CCcccccCCCCcE
Q 037969          150 ALKKCSAISLLNSSIH-EVSEEFECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFS-LPSSIGLLANLQT  227 (300)
Q Consensus       150 ~~~~l~~L~l~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~-lp~~i~~l~~L~~  227 (300)
                      .++++++|++++|.+. .+|. ..+++|++|++++|.+ .+.+|..+ +.+++|++|++++|.+.. +|..++++++|++
T Consensus       116 ~l~~L~~L~Ls~n~l~~~~p~-~~l~~L~~L~Ls~n~~-~~~~p~~~-~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~  192 (968)
T PLN00113        116 TSSSLRYLNLSNNNFTGSIPR-GSIPNLETLDLSNNML-SGEIPNDI-GSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEF  192 (968)
T ss_pred             cCCCCCEEECcCCccccccCc-cccCCCCEEECcCCcc-cccCChHH-hcCCCCCEEECccCcccccCChhhhhCcCCCe
Confidence            5667778888777763 3332 3577888888888877 24566665 788889999998888764 7888888889999


Q ss_pred             EEccCCCCCC--cccccCCCCcCEEEccCCCCC-CCchhhcCCCCCCEEeccCCCCccccchhhhcCCCCCCeeeC
Q 037969          228 LCLDQSMLGD--IAIIGKLKNLEILSFLNSDIV-RLPGELGQLTKLRLLDLTDCLQLKFIVPNVLSSFTRLEELYM  300 (300)
Q Consensus       228 L~l~~~~l~~--p~~~~~l~~L~~L~l~~~~l~-~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l  300 (300)
                      |++++|.+..  |..++++++|++|++++|.+. .+|..++++++|++|++++|...+.+|.. ++++++|++|++
T Consensus       193 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L  267 (968)
T PLN00113        193 LTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSS-LGNLKNLQYLFL  267 (968)
T ss_pred             eeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChh-HhCCCCCCEEEC
Confidence            9998888765  788888899999999888776 78888888999999999988855677776 888888888864

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.55  E-value=1e-16  Score=142.36  Aligned_cols=154  Identities=23%  Similarity=0.300  Sum_probs=138.7

Q ss_pred             cccCCCc-cccCCccEEEeecCCCcccCccc-cCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCcCCccc
Q 037969          142 VWEWPDE-DALKKCSAISLLNSSIHEVSEEF-ECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPSSI  219 (300)
Q Consensus       142 ~~~~~~~-~~~~~l~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~i  219 (300)
                      +.++|.. ..+.+++.++++.|.+..+|+.. ++++|+.|++++|.+  .++.-.+ ..+.+|.+|+++.|+++.+|+.+
T Consensus       211 l~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~i--teL~~~~-~~W~~lEtLNlSrNQLt~LP~av  287 (1255)
T KOG0444|consen  211 LDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKI--TELNMTE-GEWENLETLNLSRNQLTVLPDAV  287 (1255)
T ss_pred             hhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCce--eeeeccH-HHHhhhhhhccccchhccchHHH
Confidence            4455654 77889999999999999999887 999999999999999  7777666 77899999999999999999999


Q ss_pred             ccCCCCcEEEccCCCCC--C-cccccCCCCcCEEEccCCCCCCCchhhcCCCCCCEEeccCCCCccccchhhhcCCCCCC
Q 037969          220 GLLANLQTLCLDQSMLG--D-IAIIGKLKNLEILSFLNSDIVRLPGELGQLTKLRLLDLTDCLQLKFIVPNVLSSFTRLE  296 (300)
Q Consensus       220 ~~l~~L~~L~l~~~~l~--~-p~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~l~~L~~L~  296 (300)
                      ++|+.|+.|.+.+|.+.  . |++||++.+|+.+...+|.++-.|.+++.+.+|+.|.++.|+ +-.+|.. |.-|+.|+
T Consensus       288 cKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~Nr-LiTLPea-IHlL~~l~  365 (1255)
T KOG0444|consen  288 CKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDHNR-LITLPEA-IHLLPDLK  365 (1255)
T ss_pred             hhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCchhhhhhHHHHHhcccccc-eeechhh-hhhcCCcc
Confidence            99999999999999855  4 899999999999999999999999999999999999999998 8889987 88899999


Q ss_pred             eeeC
Q 037969          297 ELYM  300 (300)
Q Consensus       297 ~L~l  300 (300)
                      .|++
T Consensus       366 vLDl  369 (1255)
T KOG0444|consen  366 VLDL  369 (1255)
T ss_pred             eeec
Confidence            8875

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.53  E-value=1.2e-15  Score=135.73  Aligned_cols=147  Identities=27%  Similarity=0.398  Sum_probs=111.1

Q ss_pred             cccCCccEEEeecCCCcccCccc-cCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCcCCcccccCCCCcE
Q 037969          149 DALKKCSAISLLNSSIHEVSEEF-ECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPSSIGLLANLQT  227 (300)
Q Consensus       149 ~~~~~l~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~  227 (300)
                      -.+..++.|++++|++.++|... ..+++-+|++++|++  ..+|..+|-++.-|-+|||++|++..+|+.+..|.+|++
T Consensus       100 F~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~I--etIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~Lqt  177 (1255)
T KOG0444|consen  100 FRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNI--ETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQT  177 (1255)
T ss_pred             cccccceeeecchhhhhhcchhhhhhcCcEEEEcccCcc--ccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhh
Confidence            56788999999999999999877 788999999999999  999999999999999999999999999999999999999


Q ss_pred             EEccCCCCCC--cccccCCCCcCEEEccCCC--CCCCchhhcCCCCCCEEeccCCCCccccchhhhcCCCCCCeee
Q 037969          228 LCLDQSMLGD--IAIIGKLKNLEILSFLNSD--IVRLPGELGQLTKLRLLDLTDCLQLKFIVPNVLSSFTRLEELY  299 (300)
Q Consensus       228 L~l~~~~l~~--p~~~~~l~~L~~L~l~~~~--l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~  299 (300)
                      |+|++|.+.-  ...+..+++|++|.+++++  +..+|.++-.|.+|+.++++.|. +..+|.- +-++++|+.|+
T Consensus       178 L~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~-Lp~vPec-ly~l~~LrrLN  251 (1255)
T KOG0444|consen  178 LKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENN-LPIVPEC-LYKLRNLRRLN  251 (1255)
T ss_pred             hhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccC-CCcchHH-Hhhhhhhheec
Confidence            9999996543  3444455555555555552  22555555555555555555555 5555544 45555555554

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.39  E-value=3.8e-14  Score=125.17  Aligned_cols=147  Identities=20%  Similarity=0.275  Sum_probs=109.0

Q ss_pred             cCCccEEEeecCCCcccCc--cccCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCcC-CcccccCCCCcE
Q 037969          151 LKKCSAISLLNSSIHEVSE--EFECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSL-PSSIGLLANLQT  227 (300)
Q Consensus       151 ~~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L~~  227 (300)
                      +++++.|++..|.+..+..  +-+++.|+.|.+..|.+  ..+.++.|-.+.++++|+|+.|+++.+ -.++.+|+.|+.
T Consensus       220 L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I--~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~  297 (873)
T KOG4194|consen  220 LPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDI--SKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQ  297 (873)
T ss_pred             cchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCc--ccccCcceeeecccceeecccchhhhhhcccccccchhhh
Confidence            4555555555555543321  12556666666666666  666666666777788888888888776 345778888999


Q ss_pred             EEccCCCCCC--cccccCCCCcCEEEccCCCCCCCchh-hcCCCCCCEEeccCCCCccccchhhhcCCCCCCeeeC
Q 037969          228 LCLDQSMLGD--IAIIGKLKNLEILSFLNSDIVRLPGE-LGQLTKLRLLDLTDCLQLKFIVPNVLSSFTRLEELYM  300 (300)
Q Consensus       228 L~l~~~~l~~--p~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l  300 (300)
                      |++++|.+..  +.++...++|++|+|+.|+++++|++ +..|..|+.|.+++|+ +..+.++.+..+++|++|+|
T Consensus       298 L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Ns-i~~l~e~af~~lssL~~LdL  372 (873)
T KOG4194|consen  298 LDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNS-IDHLAEGAFVGLSSLHKLDL  372 (873)
T ss_pred             hccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccc-hHHHHhhHHHHhhhhhhhcC
Confidence            9999998887  78888889999999999999888764 6777888888888888 78888777888888888875

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.39  E-value=5.3e-14  Score=119.13  Aligned_cols=126  Identities=27%  Similarity=0.443  Sum_probs=102.7

Q ss_pred             EEeecCCCcccCccc-cCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCcCCcccccCCCCcEEEccCCCC
Q 037969          157 ISLLNSSIHEVSEEF-ECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPSSIGLLANLQTLCLDQSML  235 (300)
Q Consensus       157 L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l  235 (300)
                      +.++.+.++-+|... .+++|..|++++|.+  ..+|... +.+..||.|+++.|++..+|+.+..+..++++-.+++++
T Consensus       417 l~lsnn~isfv~~~l~~l~kLt~L~L~NN~L--n~LP~e~-~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi  493 (565)
T KOG0472|consen  417 LVLSNNKISFVPLELSQLQKLTFLDLSNNLL--NDLPEEM-GSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQI  493 (565)
T ss_pred             HHhhcCccccchHHHHhhhcceeeecccchh--hhcchhh-hhhhhhheecccccccccchHHHhhHHHHHHHHhccccc
Confidence            344445555555544 788888899988888  8888876 678889999999998888888888888888888888888


Q ss_pred             CC--cccccCCCCcCEEEccCCCCCCCchhhcCCCCCCEEeccCCCCccccchh
Q 037969          236 GD--IAIIGKLKNLEILSFLNSDIVRLPGELGQLTKLRLLDLTDCLQLKFIVPN  287 (300)
Q Consensus       236 ~~--p~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~  287 (300)
                      ..  +..++.+.+|.+|++..|.+..+|+.+|+|++|++|++++|+ +. .|++
T Consensus       494 ~~vd~~~l~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNp-fr-~Pr~  545 (565)
T KOG0472|consen  494 GSVDPSGLKNMRNLTTLDLQNNDLQQIPPILGNMTNLRHLELDGNP-FR-QPRH  545 (565)
T ss_pred             cccChHHhhhhhhcceeccCCCchhhCChhhccccceeEEEecCCc-cC-CCHH
Confidence            87  466899999999999999999999999999999999999998 44 6665

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.36  E-value=5.4e-14  Score=119.09  Aligned_cols=141  Identities=27%  Similarity=0.348  Sum_probs=108.1

Q ss_pred             cEEEeecCCCcccCccc-cCCCccE-EecccCccccccCchhHHhcCCcccEEEeeCCcCCcCCcccccCCCCcEEEccC
Q 037969          155 SAISLLNSSIHEVSEEF-ECLQLEF-LHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPSSIGLLANLQTLCLDQ  232 (300)
Q Consensus       155 ~~L~l~~~~~~~~~~~~-~~~~L~~-L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~  232 (300)
                      +..+++.|++.++|+.. .+..+.+ +.++.|.+  ..+|. +.+.+++|..|++++|-+..+|..++.+..||.|+++.
T Consensus       391 t~VnfskNqL~elPk~L~~lkelvT~l~lsnn~i--sfv~~-~l~~l~kLt~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~  467 (565)
T KOG0472|consen  391 TSVNFSKNQLCELPKRLVELKELVTDLVLSNNKI--SFVPL-ELSQLQKLTFLDLSNNLLNDLPEEMGSLVRLQTLNLSF  467 (565)
T ss_pred             EEEecccchHhhhhhhhHHHHHHHHHHHhhcCcc--ccchH-HHHhhhcceeeecccchhhhcchhhhhhhhhheecccc
Confidence            34444444444444432 2222222 23333333  33333 34889999999999999999999999999999999999


Q ss_pred             CCCCC-cccccCCCCcCEEEccCCCCCCCchh-hcCCCCCCEEeccCCCCccccchhhhcCCCCCCeeeC
Q 037969          233 SMLGD-IAIIGKLKNLEILSFLNSDIVRLPGE-LGQLTKLRLLDLTDCLQLKFIVPNVLSSFTRLEELYM  300 (300)
Q Consensus       233 ~~l~~-p~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l  300 (300)
                      |++.. |..+..+..|+++..+.+.+.++|.+ +++|.+|.+|++.+|. +..+|+. +|+|++|++|.+
T Consensus       468 NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNd-lq~IPp~-LgnmtnL~hLeL  535 (565)
T KOG0472|consen  468 NRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNND-LQQIPPI-LGNMTNLRHLEL  535 (565)
T ss_pred             cccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCc-hhhCChh-hccccceeEEEe
Confidence            99988 88888888888888888899988777 9999999999999988 9999998 999999999875

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.33  E-value=1.6e-12  Score=101.18  Aligned_cols=123  Identities=24%  Similarity=0.371  Sum_probs=53.1

Q ss_pred             cCCccEEEeecCCCcccCccc-cCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCcCCccc-ccCCCCcEE
Q 037969          151 LKKCSAISLLNSSIHEVSEEF-ECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPSSI-GLLANLQTL  228 (300)
Q Consensus       151 ~~~l~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~i-~~l~~L~~L  228 (300)
                      ..+++.|+++++.+..+.... .+.+|+.|++++|.+  ..++.  +..++.|++|++++|+++++++.+ ..+++|+.|
T Consensus        18 ~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I--~~l~~--l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L   93 (175)
T PF14580_consen   18 PVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQI--TKLEG--LPGLPRLKTLDLSNNRISSISEGLDKNLPNLQEL   93 (175)
T ss_dssp             ------------------S--TT-TT--EEE-TTS----S--TT------TT--EEE--SS---S-CHHHHHH-TT--EE
T ss_pred             ccccccccccccccccccchhhhhcCCCEEECCCCCC--ccccC--ccChhhhhhcccCCCCCCccccchHHhCCcCCEE
Confidence            345788999999887776655 678899999999988  77765  477889999999999998886655 368889999


Q ss_pred             EccCCCCCC---cccccCCCCcCEEEccCCCCCCCch----hhcCCCCCCEEeccC
Q 037969          229 CLDQSMLGD---IAIIGKLKNLEILSFLNSDIVRLPG----ELGQLTKLRLLDLTD  277 (300)
Q Consensus       229 ~l~~~~l~~---p~~~~~l~~L~~L~l~~~~l~~lp~----~~~~l~~L~~L~l~~  277 (300)
                      ++++|.+..   ...+..+++|+.|++.+|.++..+.    -+..+++|+.||-..
T Consensus        94 ~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~  149 (175)
T PF14580_consen   94 YLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQD  149 (175)
T ss_dssp             E-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred             ECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEE
Confidence            999998776   4677788899999999988875554    267788888888543

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.30  E-value=2.6e-12  Score=113.76  Aligned_cols=148  Identities=21%  Similarity=0.306  Sum_probs=93.1

Q ss_pred             cccCCccEEEeecCCCcccCccc-cCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCcCCc-ccccCCCCc
Q 037969          149 DALKKCSAISLLNSSIHEVSEEF-ECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPS-SIGLLANLQ  226 (300)
Q Consensus       149 ~~~~~l~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L~  226 (300)
                      ..+++++.+.+..|.+..+|... ...+++.|++.+|.+  ..+...-++.++.||+|||+.|.++++|. ++..=.+++
T Consensus        99 ~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I--~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~  176 (873)
T KOG4194|consen   99 YNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLI--SSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIK  176 (873)
T ss_pred             hcCCcceeeeeccchhhhcccccccccceeEEeeecccc--ccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCce
Confidence            45566666777666666666665 444577777777766  55555445666777777777777776653 344445677


Q ss_pred             EEEccCCCCCC--cccccCCCCcCEEEccCCCCCCCchh-hcCCCCCCEEeccCCCCccccchhhhcCCCCCCeee
Q 037969          227 TLCLDQSMLGD--IAIIGKLKNLEILSFLNSDIVRLPGE-LGQLTKLRLLDLTDCLQLKFIVPNVLSSFTRLEELY  299 (300)
Q Consensus       227 ~L~l~~~~l~~--p~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~  299 (300)
                      +|+|++|.+..  -..+..+.+|.+|.|+.|.++.+|.- +.+|++|+.|++..|+ ++.+.--.+..|++|+.|.
T Consensus       177 ~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~-irive~ltFqgL~Sl~nlk  251 (873)
T KOG4194|consen  177 KLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNR-IRIVEGLTFQGLPSLQNLK  251 (873)
T ss_pred             EEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccc-eeeehhhhhcCchhhhhhh
Confidence            77777777665  35566666777777777777777654 4447777777777666 4444322355555555543

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.28  E-value=4.9e-12  Score=98.48  Aligned_cols=134  Identities=24%  Similarity=0.271  Sum_probs=52.8

Q ss_pred             cCCCcccCccccCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCcCCcccccCCCCcEEEccCCCCCC-cc
Q 037969          161 NSSIHEVSEEFECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPSSIGLLANLQTLCLDQSMLGD-IA  239 (300)
Q Consensus       161 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~-p~  239 (300)
                      .+.+...+...+..+++.|++.+|.+  ..+.. +...+.+|++|++++|.++.++ .+..+++|++|++++|.++. .+
T Consensus         6 ~~~i~~~~~~~n~~~~~~L~L~~n~I--~~Ie~-L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~   81 (175)
T PF14580_consen    6 ANMIEQIAQYNNPVKLRELNLRGNQI--STIEN-LGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISE   81 (175)
T ss_dssp             --------------------------------S---TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CH
T ss_pred             cccccccccccccccccccccccccc--ccccc-hhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCcccc
Confidence            34455666666777899999999999  66653 3225789999999999999985 57889999999999999998 44


Q ss_pred             cc-cCCCCcCEEEccCCCCCCCc--hhhcCCCCCCEEeccCCCCccccc---hhhhcCCCCCCeee
Q 037969          240 II-GKLKNLEILSFLNSDIVRLP--GELGQLTKLRLLDLTDCLQLKFIV---PNVLSSFTRLEELY  299 (300)
Q Consensus       240 ~~-~~l~~L~~L~l~~~~l~~lp--~~~~~l~~L~~L~l~~~~~l~~lp---~~~l~~L~~L~~L~  299 (300)
                      .+ ..+++|++|++++|++..+-  ..+..+++|+.|++.+|+ +...+   .-++..+++|+.||
T Consensus        82 ~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NP-v~~~~~YR~~vi~~lP~Lk~LD  146 (175)
T PF14580_consen   82 GLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNP-VCEKKNYRLFVIYKLPSLKVLD  146 (175)
T ss_dssp             HHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-G-GGGSTTHHHHHHHH-TT-SEET
T ss_pred             chHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCc-ccchhhHHHHHHHHcChhheeC
Confidence            45 46899999999999887442  357889999999999998 44333   23588899999886

>PLN03210 Resistant to P

Probab=99.26  E-value=3.7e-11  Score=120.21  Aligned_cols=131  Identities=24%  Similarity=0.330  Sum_probs=107.7

Q ss_pred             cCCccEEEeecCCCcccCccccCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCc-CCcCCcccccCCCCcEEE
Q 037969          151 LKKCSAISLLNSSIHEVSEEFECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMR-LFSLPSSIGLLANLQTLC  229 (300)
Q Consensus       151 ~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~-~~~lp~~i~~l~~L~~L~  229 (300)
                      ..++|.|.+.++.+..+|..+...+|+.|++.++.+  ..++..+ ..+++|++|+++++. +..+|. ++.+++|++|+
T Consensus       588 p~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l--~~L~~~~-~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~  663 (1153)
T PLN03210        588 PPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKL--EKLWDGV-HSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLK  663 (1153)
T ss_pred             CcccEEEEecCCCCCCCCCcCCccCCcEEECcCccc--ccccccc-ccCCCCCEEECCCCCCcCcCCc-cccCCcccEEE
Confidence            356889999998888899888888999999999888  7888776 788999999998764 555664 78889999999


Q ss_pred             ccCCC-CCC-cccccCCCCcCEEEccCC-CCCCCchhhcCCCCCCEEeccCCCCccccch
Q 037969          230 LDQSM-LGD-IAIIGKLKNLEILSFLNS-DIVRLPGELGQLTKLRLLDLTDCLQLKFIVP  286 (300)
Q Consensus       230 l~~~~-l~~-p~~~~~l~~L~~L~l~~~-~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~  286 (300)
                      +++|. +.. |..++.+++|+.|++++| .++.+|..+ ++++|++|++++|..++.+|.
T Consensus       664 L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~  722 (1153)
T PLN03210        664 LSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPD  722 (1153)
T ss_pred             ecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCcccccc
Confidence            98876 445 888889999999999988 788888766 788888888888877776664

syringae 6; Provisional

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.22  E-value=1e-10  Score=110.72  Aligned_cols=35  Identities=20%  Similarity=0.376  Sum_probs=17.3

Q ss_pred             cccEEEeeCCcCCcCCcccccCCCCcEEEccCCCCCC
Q 037969          201 TLRVIDLTRMRLFSLPSSIGLLANLQTLCLDQSMLGD  237 (300)
Q Consensus       201 ~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~  237 (300)
                      +|+.|++++|+++.+|..+.  .+|++|++++|.+..
T Consensus       263 ~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~  297 (754)
T PRK15370        263 ALQSLDLFHNKISCLPENLP--EELRYLSVYDNSIRT  297 (754)
T ss_pred             CCCEEECcCCccCccccccC--CCCcEEECCCCcccc
Confidence            44555555555555444332  245555555555443

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.22  E-value=5.1e-11  Score=112.74  Aligned_cols=119  Identities=20%  Similarity=0.285  Sum_probs=94.6

Q ss_pred             EEEeccccccCCCccccCCccEEEeecCCCcccCccccCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCc
Q 037969          135 FLVRNEVVWEWPDEDALKKCSAISLLNSSIHEVSEEFECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFS  214 (300)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~  214 (300)
                      ..+.+..+..+|.. ..++++.|++++|.+..+|... +++|+.|++.+|.+  ..+|..+   ..+|+.|++++|.++.
T Consensus       183 L~L~~~~LtsLP~~-Ip~~L~~L~Ls~N~LtsLP~~l-~~nL~~L~Ls~N~L--tsLP~~l---~~~L~~L~Ls~N~L~~  255 (754)
T PRK15370        183 LRLKILGLTTIPAC-IPEQITTLILDNNELKSLPENL-QGNIKTLYANSNQL--TSIPATL---PDTIQEMELSINRITE  255 (754)
T ss_pred             EEeCCCCcCcCCcc-cccCCcEEEecCCCCCcCChhh-ccCCCEEECCCCcc--ccCChhh---hccccEEECcCCccCc
Confidence            34445556666652 3567999999999998888755 36899999999999  7888765   3579999999999999


Q ss_pred             CCcccccCCCCcEEEccCCCCCC-cccccCCCCcCEEEccCCCCCCCchhh
Q 037969          215 LPSSIGLLANLQTLCLDQSMLGD-IAIIGKLKNLEILSFLNSDIVRLPGEL  264 (300)
Q Consensus       215 lp~~i~~l~~L~~L~l~~~~l~~-p~~~~~l~~L~~L~l~~~~l~~lp~~~  264 (300)
                      +|..+.  .+|++|++++|.+.. |..+.  ++|+.|++++|+++.+|..+
T Consensus       256 LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~l  302 (754)
T PRK15370        256 LPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDNSIRTLPAHL  302 (754)
T ss_pred             CChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCCccccCcccc
Confidence            998765  589999999999888 66554  58999999999988877643

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.21  E-value=1.2e-12  Score=107.22  Aligned_cols=132  Identities=25%  Similarity=0.280  Sum_probs=111.9

Q ss_pred             cccCCccEEEeecCCCcccCccc-cCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCcCCcccccCCCCcE
Q 037969          149 DALKKCSAISLLNSSIHEVSEEF-ECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPSSIGLLANLQT  227 (300)
Q Consensus       149 ~~~~~l~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~  227 (300)
                      ..++.++.+++++|.++.+..+. -.|++|.|++++|.+  ..+..  +..+++|+.|||++|.++++-..-.++-|.++
T Consensus       281 dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i--~~v~n--La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKt  356 (490)
T KOG1259|consen  281 DTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRI--RTVQN--LAELPQLQLLDLSGNLLAECVGWHLKLGNIKT  356 (490)
T ss_pred             chHhhhhhccccccchhhhhhhhhhccceeEEeccccce--eeehh--hhhcccceEeecccchhHhhhhhHhhhcCEee
Confidence            34566788999999998888877 678999999999998  66655  47889999999999998887555567888999


Q ss_pred             EEccCCCCCCcccccCCCCcCEEEccCCCCCCCc--hhhcCCCCCCEEeccCCCCccccc
Q 037969          228 LCLDQSMLGDIAIIGKLKNLEILSFLNSDIVRLP--GELGQLTKLRLLDLTDCLQLKFIV  285 (300)
Q Consensus       228 L~l~~~~l~~p~~~~~l~~L~~L~l~~~~l~~lp--~~~~~l~~L~~L~l~~~~~l~~lp  285 (300)
                      |.+.+|.+...++++++.+|..|++++|+++.+.  .+||+|++|+++.+.+|+ +..+|
T Consensus       357 L~La~N~iE~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NP-l~~~v  415 (490)
T KOG1259|consen  357 LKLAQNKIETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNP-LAGSV  415 (490)
T ss_pred             eehhhhhHhhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCC-ccccc
Confidence            9999999988899999999999999999998653  469999999999999998 55554

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.18  E-value=8.3e-13  Score=116.42  Aligned_cols=140  Identities=26%  Similarity=0.404  Sum_probs=78.6

Q ss_pred             CccEEEeecCCCcccCccc-cCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCcCCcccccCCCCcEEEcc
Q 037969          153 KCSAISLLNSSIHEVSEEF-ECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPSSIGLLANLQTLCLD  231 (300)
Q Consensus       153 ~l~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~  231 (300)
                      .+..+.+..|.+..+|..+ ++..|..++++.|++  ..+|..+ + .--|++|.+++|+++.+|+.++.+..|..||.+
T Consensus        99 ~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~Nql--S~lp~~l-C-~lpLkvli~sNNkl~~lp~~ig~~~tl~~ld~s  174 (722)
T KOG0532|consen   99 SLESLILYHNCIRTIPEAICNLEALTFLDLSSNQL--SHLPDGL-C-DLPLKVLIVSNNKLTSLPEEIGLLPTLAHLDVS  174 (722)
T ss_pred             HHHHHHHHhccceecchhhhhhhHHHHhhhccchh--hcCChhh-h-cCcceeEEEecCccccCCcccccchhHHHhhhh
Confidence            3444455555555555444 555566666666655  5555554 2 233566666666666666666655556666666


Q ss_pred             CCCCCC-cccccCCCCcCEEEccCCCCCCCchhhcCCCCCCEEeccCCCCccccchhhhcCCCCCCeee
Q 037969          232 QSMLGD-IAIIGKLKNLEILSFLNSDIVRLPGELGQLTKLRLLDLTDCLQLKFIVPNVLSSFTRLEELY  299 (300)
Q Consensus       232 ~~~l~~-p~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~  299 (300)
                      .|.+.. |+.++.+.+|+.|.++.|.+..+|..++.| .|..||++.|+ +..+|-. |.+|+.||+|.
T Consensus       175 ~nei~slpsql~~l~slr~l~vrRn~l~~lp~El~~L-pLi~lDfScNk-is~iPv~-fr~m~~Lq~l~  240 (722)
T KOG0532|consen  175 KNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELCSL-PLIRLDFSCNK-ISYLPVD-FRKMRHLQVLQ  240 (722)
T ss_pred             hhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHhCC-ceeeeecccCc-eeecchh-hhhhhhheeee
Confidence            665555 555555666666666655555555555532 45555655555 5555555 55555555553

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.13  E-value=2.5e-10  Score=107.77  Aligned_cols=69  Identities=16%  Similarity=0.146  Sum_probs=36.0

Q ss_pred             CCcEEEccCCCCCC-cccccCCCCcCEEEccCCCCCCCchhhcCCCCCCEEeccCCCCccccchhhhcCCCCCCeeeC
Q 037969          224 NLQTLCLDQSMLGD-IAIIGKLKNLEILSFLNSDIVRLPGELGQLTKLRLLDLTDCLQLKFIVPNVLSSFTRLEELYM  300 (300)
Q Consensus       224 ~L~~L~l~~~~l~~-p~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l  300 (300)
                      +|+.|++++|.+.. |..   .++|+.|++++|.++.+|..   ..+|+.|++++|. ++.+|.. ++++++|+.|+|
T Consensus       383 ~L~~LdLs~N~Lt~LP~l---~s~L~~LdLS~N~LssIP~l---~~~L~~L~Ls~Nq-Lt~LP~s-l~~L~~L~~LdL  452 (788)
T PRK15387        383 GLKELIVSGNRLTSLPVL---PSELKELMVSGNRLTSLPML---PSGLLSLSVYRNQ-LTRLPES-LIHLSSETTVNL  452 (788)
T ss_pred             ccceEEecCCcccCCCCc---ccCCCEEEccCCcCCCCCcc---hhhhhhhhhccCc-ccccChH-HhhccCCCeEEC
Confidence            34555555555544 321   23455555555555555532   2245556666655 5566655 666666666653

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.12  E-value=4.4e-12  Score=117.55  Aligned_cols=81  Identities=32%  Similarity=0.470  Sum_probs=42.3

Q ss_pred             cCCcccEEEeeCCcCCcCCcc-cccCCCCcEEEccCCCCCC-cccccCCCCcCEEEccCCCCCCCchhhcCCCCCCEEec
Q 037969          198 GMKTLRVIDLTRMRLFSLPSS-IGLLANLQTLCLDQSMLGD-IAIIGKLKNLEILSFLNSDIVRLPGELGQLTKLRLLDL  275 (300)
Q Consensus       198 ~l~~L~~L~l~~~~~~~lp~~-i~~l~~L~~L~l~~~~l~~-p~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l  275 (300)
                      ++++|++|+|++|++..+|++ +.++..|+.|+++||.++. |.++.+++.|++|...+|.+..+| .+.+++.|+.+|+
T Consensus       381 ~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fP-e~~~l~qL~~lDl  459 (1081)
T KOG0618|consen  381 NFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFP-ELAQLPQLKVLDL  459 (1081)
T ss_pred             cccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeech-hhhhcCcceEEec
Confidence            344555555555555555432 4445555555555555555 555555555555555555555555 4555555555555


Q ss_pred             cCCC
Q 037969          276 TDCL  279 (300)
Q Consensus       276 ~~~~  279 (300)
                      +.|.
T Consensus       460 S~N~  463 (1081)
T KOG0618|consen  460 SCNN  463 (1081)
T ss_pred             ccch
Confidence            5544

>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []

Probab=99.10  E-value=3.1e-12  Score=109.23  Aligned_cols=80  Identities=28%  Similarity=0.455  Sum_probs=63.0

Q ss_pred             CcccCCC-ChhHHHHHHHHhcCCCCCCCCCCCcccccceeeccccCCchhHHHHHHHhhhcCCCCCHH--HHHhhhhhcc
Q 037969            1 ARALRNK-SLHEWKNALRELQTPSVVNFEGVPAETYSSIELSFKYLKGEQLKKIFLLCSLIGNSFWFT--DLFKYSMGLG   77 (300)
Q Consensus         1 g~~L~~k-~~~~W~~~l~~l~~~~~~~~~~~~~~i~~~l~lsy~~L~~~~lk~cfl~~a~fp~~~~~~--~Li~~w~aeg   77 (300)
                      |++|+.+ +..+|+++++++....... .+....+..++.+||+.||++ +|.||+|||+||+++.|+  .|+++|+|+|
T Consensus       203 a~~l~~~~~~~~w~~~~~~l~~~~~~~-~~~~~~~~~~l~~s~~~L~~~-~~~~f~~L~~f~~~~~i~~~~li~lW~~e~  280 (287)
T PF00931_consen  203 ASYLRSKSTVDEWEEALEELENSLRES-RDYDRSVFSALELSYDSLPDE-LRRCFLYLSIFPEGVPIPRERLIRLWVAEG  280 (287)
T ss_dssp             HHHHHHHHSSSSHHHHHHHHHHCHTCS-SGSCHHHHHHHHHHHHSSHTC-CHHHHHHGGGSGTTS-EEHHHHHHHHTT-H
T ss_pred             ccccccccccccccccccccccccccc-ccccccccccceechhcCCcc-HHHHHhhCcCCCCCceECHHHHHHHHHHCC
Confidence            3456555 7899999998877644321 223556999999999999998 999999999999999988  9999999999


Q ss_pred             cccCc
Q 037969           78 IFQGV   82 (300)
Q Consensus        78 ~i~~~   82 (300)
                      +|+..
T Consensus       281 ~i~~~  285 (287)
T PF00931_consen  281 FISSK  285 (287)
T ss_dssp             HTC--
T ss_pred             CCccc
Confidence            99763

This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.08  E-value=7.4e-11  Score=100.06  Aligned_cols=61  Identities=26%  Similarity=0.389  Sum_probs=36.4

Q ss_pred             ccccCCCCcCEEEccCCCCCCCch-hhcCCCCCCEEeccCCCCccccchhhhcCCCCCCeeeC
Q 037969          239 AIIGKLKNLEILSFLNSDIVRLPG-ELGQLTKLRLLDLTDCLQLKFIVPNVLSSFTRLEELYM  300 (300)
Q Consensus       239 ~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l  300 (300)
                      ..+.++++|+.|++++|.++.+-+ ++..+..++.|++..|+ +..+..+++..+..|++|+|
T Consensus       268 ~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~-l~~v~~~~f~~ls~L~tL~L  329 (498)
T KOG4237|consen  268 KCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNK-LEFVSSGMFQGLSGLKTLSL  329 (498)
T ss_pred             HHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcch-HHHHHHHhhhccccceeeee
Confidence            335577777777777777765533 35555566666666665 55555555555555555543

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.07  E-value=1.2e-11  Score=114.81  Aligned_cols=129  Identities=22%  Similarity=0.360  Sum_probs=111.2

Q ss_pred             cccCCccEEEeecCCC--cccCccccCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCcCCcccccCCCCc
Q 037969          149 DALKKCSAISLLNSSI--HEVSEEFECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPSSIGLLANLQ  226 (300)
Q Consensus       149 ~~~~~l~~L~l~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~  226 (300)
                      .....+..|.+.+|.+  ..+|...++.+|++|.+.+|.+  ..+|++.+.++..|+.|+|+||+++.+|..+.++..|+
T Consensus       356 ~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL--~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~  433 (1081)
T KOG0618|consen  356 NNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRL--NSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLH  433 (1081)
T ss_pred             hhhHHHHHHHHhcCcccccchhhhccccceeeeeeccccc--ccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhH
Confidence            3455577788888888  4577777999999999999999  99999999999999999999999999999999999999


Q ss_pred             EEEccCCCCCCcccccCCCCcCEEEccCCCCC--CCchhhcCCCCCCEEeccCCCC
Q 037969          227 TLCLDQSMLGDIAIIGKLKNLEILSFLNSDIV--RLPGELGQLTKLRLLDLTDCLQ  280 (300)
Q Consensus       227 ~L~l~~~~l~~p~~~~~l~~L~~L~l~~~~l~--~lp~~~~~l~~L~~L~l~~~~~  280 (300)
                      +|...+|.+...+.+.+++.|+.+|++.|+++  .+|...-. ++|++|++++|..
T Consensus       434 tL~ahsN~l~~fPe~~~l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~~  488 (1081)
T KOG0618|consen  434 TLRAHSNQLLSFPELAQLPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGNTR  488 (1081)
T ss_pred             HHhhcCCceeechhhhhcCcceEEecccchhhhhhhhhhCCC-cccceeeccCCcc
Confidence            99999999888338999999999999999887  44443322 7999999999984

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.03  E-value=2.5e-09  Score=101.08  Aligned_cols=94  Identities=18%  Similarity=0.144  Sum_probs=48.5

Q ss_pred             EEeccccccCCCccccCCccEEEeecCCCcccCccccCCCccEEecccCccccccCchhH----------------HhcC
Q 037969          136 LVRNEVVWEWPDEDALKKCSAISLLNSSIHEVSEEFECLQLEFLHISQNTFVEVNIPDNI----------------FKGM  199 (300)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~----------------~~~l  199 (300)
                      .+....+..+|. ....+++.|.+..|.+..+|..  .++|++|++++|.+  ..+|...                ...+
T Consensus       207 dLs~~~LtsLP~-~l~~~L~~L~L~~N~Lt~LP~l--p~~Lk~LdLs~N~L--tsLP~lp~sL~~L~Ls~N~L~~Lp~lp  281 (788)
T PRK15387        207 NVGESGLTTLPD-CLPAHITTLVIPDNNLTSLPAL--PPELRTLEVSGNQL--TSLPVLPPGLLELSIFSNPLTHLPALP  281 (788)
T ss_pred             EcCCCCCCcCCc-chhcCCCEEEccCCcCCCCCCC--CCCCcEEEecCCcc--CcccCcccccceeeccCCchhhhhhch
Confidence            344444555554 2223556666666666555542  35566666666655  4444311                0011


Q ss_pred             CcccEEEeeCCcCCcCCcccccCCCCcEEEccCCCCCC
Q 037969          200 KTLRVIDLTRMRLFSLPSSIGLLANLQTLCLDQSMLGD  237 (300)
Q Consensus       200 ~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~  237 (300)
                      ..|+.|++++|.++.+|..   +++|++|++++|.+..
T Consensus       282 ~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~L~~  316 (788)
T PRK15387        282 SGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLAS  316 (788)
T ss_pred             hhcCEEECcCCcccccccc---ccccceeECCCCcccc
Confidence            3445555555555555542   3567777777776655

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.00  E-value=3.2e-11  Score=106.60  Aligned_cols=134  Identities=25%  Similarity=0.377  Sum_probs=122.4

Q ss_pred             cccCCccEEEeecCCCcccCccccCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCcCCcccccCCCCcEE
Q 037969          149 DALKKCSAISLLNSSIHEVSEEFECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPSSIGLLANLQTL  228 (300)
Q Consensus       149 ~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L  228 (300)
                      ..+..++.++++.|++..+|..+..--|+.|.+++|.+  +.+|+.+ +....|..|+.+.|.+..+|+.++.+..|+.|
T Consensus       118 ~~L~~lt~l~ls~NqlS~lp~~lC~lpLkvli~sNNkl--~~lp~~i-g~~~tl~~ld~s~nei~slpsql~~l~slr~l  194 (722)
T KOG0532|consen  118 CNLEALTFLDLSSNQLSHLPDGLCDLPLKVLIVSNNKL--TSLPEEI-GLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDL  194 (722)
T ss_pred             hhhhHHHHhhhccchhhcCChhhhcCcceeEEEecCcc--ccCCccc-ccchhHHHhhhhhhhhhhchHHhhhHHHHHHH
Confidence            56677889999999999999888777899999999999  9999998 68899999999999999999999999999999


Q ss_pred             EccCCCCCC-cccccCCCCcCEEEccCCCCCCCchhhcCCCCCCEEeccCCCCccccchh
Q 037969          229 CLDQSMLGD-IAIIGKLKNLEILSFLNSDIVRLPGELGQLTKLRLLDLTDCLQLKFIVPN  287 (300)
Q Consensus       229 ~l~~~~l~~-p~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~  287 (300)
                      .++.|.+.. |+.++.|+ |..||++.|++..+|-+|.+|+.|++|-|.+|+ +.+=|..
T Consensus       195 ~vrRn~l~~lp~El~~Lp-Li~lDfScNkis~iPv~fr~m~~Lq~l~LenNP-LqSPPAq  252 (722)
T KOG0532|consen  195 NVRRNHLEDLPEELCSLP-LIRLDFSCNKISYLPVDFRKMRHLQVLQLENNP-LQSPPAQ  252 (722)
T ss_pred             HHhhhhhhhCCHHHhCCc-eeeeecccCceeecchhhhhhhhheeeeeccCC-CCCChHH
Confidence            999999888 88888777 999999999999999999999999999999998 7776654

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.00  E-value=3.9e-10  Score=100.70  Aligned_cols=159  Identities=26%  Similarity=0.402  Sum_probs=114.2

Q ss_pred             EEeccccccCCCccccC--CccEEEeecCCCcccCcc-ccCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcC
Q 037969          136 LVRNEVVWEWPDEDALK--KCSAISLLNSSIHEVSEE-FECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRL  212 (300)
Q Consensus       136 ~~~~~~~~~~~~~~~~~--~l~~L~l~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~  212 (300)
                      ......+..++......  +++.|++.++.+..+|.. ..+++|+.|++.+|++  ..+|... ...+.|+.|++++|.+
T Consensus       122 ~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l--~~l~~~~-~~~~~L~~L~ls~N~i  198 (394)
T COG4886         122 DLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDL--SDLPKLL-SNLSNLNNLDLSGNKI  198 (394)
T ss_pred             ecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchh--hhhhhhh-hhhhhhhheeccCCcc
Confidence            34444455555543332  788888888888777633 4788888888888888  7777644 3678888888888888


Q ss_pred             CcCCcccccCCCCcEEEccCCCCCC-cccccCCCCcCEEEccCCCCCCCchhhcCCCCCCEEeccCCCCccccchhhhcC
Q 037969          213 FSLPSSIGLLANLQTLCLDQSMLGD-IAIIGKLKNLEILSFLNSDIVRLPGELGQLTKLRLLDLTDCLQLKFIVPNVLSS  291 (300)
Q Consensus       213 ~~lp~~i~~l~~L~~L~l~~~~l~~-p~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~l~~  291 (300)
                      +.+|..++.+..|+++.+++|.... +..+.++.++..+.+.++.+..+|..++.+++++.|++++|. +..++.  ++.
T Consensus       199 ~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~-i~~i~~--~~~  275 (394)
T COG4886         199 SDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQ-ISSISS--LGS  275 (394)
T ss_pred             ccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccchhccccccceecccccc-cccccc--ccc
Confidence            8888777667778888888885333 677777777777777777777667777788888888888877 666665  677


Q ss_pred             CCCCCeeeC
Q 037969          292 FTRLEELYM  300 (300)
Q Consensus       292 L~~L~~L~l  300 (300)
                      +.+|+.|++
T Consensus       276 ~~~l~~L~~  284 (394)
T COG4886         276 LTNLRELDL  284 (394)
T ss_pred             cCccCEEec
Confidence            777777653

>PLN03150 hypothetical protein; Provisional

Probab=98.89  E-value=5.6e-09  Score=98.12  Aligned_cols=108  Identities=24%  Similarity=0.393  Sum_probs=68.4

Q ss_pred             ccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCc-CCcccccCCCCcEEEccCCCCCC--cccccCCCCcCEEEc
Q 037969          176 LEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFS-LPSSIGLLANLQTLCLDQSMLGD--IAIIGKLKNLEILSF  252 (300)
Q Consensus       176 L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~-lp~~i~~l~~L~~L~l~~~~l~~--p~~~~~l~~L~~L~l  252 (300)
                      ++.|++.+|.+ .+.+|..+ +.+++|+.|+|++|.+.. +|..++.+++|++|++++|.+..  |..++.+++|++|++
T Consensus       420 v~~L~L~~n~L-~g~ip~~i-~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~L  497 (623)
T PLN03150        420 IDGLGLDNQGL-RGFIPNDI-SKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNL  497 (623)
T ss_pred             EEEEECCCCCc-cccCCHHH-hCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEEC
Confidence            55566666665 34556554 667777777777777663 56667777777777777777664  566677777777777


Q ss_pred             cCCCCC-CCchhhcCC-CCCCEEeccCCCCccccc
Q 037969          253 LNSDIV-RLPGELGQL-TKLRLLDLTDCLQLKFIV  285 (300)
Q Consensus       253 ~~~~l~-~lp~~~~~l-~~L~~L~l~~~~~l~~lp  285 (300)
                      ++|+++ .+|..++.+ .++..+++.+|..+...|
T Consensus       498 s~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p  532 (623)
T PLN03150        498 NGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP  532 (623)
T ss_pred             cCCcccccCChHHhhccccCceEEecCCccccCCC
Confidence            777665 666666543 355566666665444433

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.88  E-value=1.2e-09  Score=97.60  Aligned_cols=147  Identities=27%  Similarity=0.386  Sum_probs=124.9

Q ss_pred             cccCCccEEEeecCCCcccCccccCC--CccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCcCCcccccCCCCc
Q 037969          149 DALKKCSAISLLNSSIHEVSEEFECL--QLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPSSIGLLANLQ  226 (300)
Q Consensus       149 ~~~~~l~~L~l~~~~~~~~~~~~~~~--~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~  226 (300)
                      .....++.+.+..+.+..++......  +|+.|++.+|.+  ..+|..+ ..++.|+.|+++.|++..+|...+.+.+|+
T Consensus       113 ~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i--~~l~~~~-~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~  189 (394)
T COG4886         113 LELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKI--ESLPSPL-RNLPNLKNLDLSFNDLSDLPKLLSNLSNLN  189 (394)
T ss_pred             hcccceeEEecCCcccccCccccccchhhcccccccccch--hhhhhhh-hccccccccccCCchhhhhhhhhhhhhhhh
Confidence            44467889999999998888877543  899999999999  8886555 789999999999999999998888899999


Q ss_pred             EEEccCCCCCC-cccccCCCCcCEEEccCCCCCCCchhhcCCCCCCEEeccCCCCccccchhhhcCCCCCCeeeC
Q 037969          227 TLCLDQSMLGD-IAIIGKLKNLEILSFLNSDIVRLPGELGQLTKLRLLDLTDCLQLKFIVPNVLSSFTRLEELYM  300 (300)
Q Consensus       227 ~L~l~~~~l~~-p~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l  300 (300)
                      .|++++|.+.. |..+..+.+|+++.+++|.+...+..+.++.++..+.+.+++ +..++.. ++.+++|++|++
T Consensus       190 ~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~-~~~~~~~-~~~l~~l~~L~~  262 (394)
T COG4886         190 NLDLSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNK-LEDLPES-IGNLSNLETLDL  262 (394)
T ss_pred             heeccCCccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCce-eeeccch-hccccccceecc
Confidence            99999999998 776677778999999999777788889999999999988887 5655554 788888888764

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.87  E-value=1.8e-09  Score=104.03  Aligned_cols=131  Identities=25%  Similarity=0.312  Sum_probs=109.2

Q ss_pred             cccCccccCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCc--CCcCCc-ccccCCCCcEEEccCCC-CCC-cc
Q 037969          165 HEVSEEFECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMR--LFSLPS-SIGLLANLQTLCLDQSM-LGD-IA  239 (300)
Q Consensus       165 ~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~--~~~lp~-~i~~l~~L~~L~l~~~~-l~~-p~  239 (300)
                      ...|...+....|...+-+|.+  ..++...  ..+.|++|-+.++.  +..++. .+..++.|++||+++|. +.. |.
T Consensus       514 ~~~~~~~~~~~~rr~s~~~~~~--~~~~~~~--~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~  589 (889)
T KOG4658|consen  514 SEIPQVKSWNSVRRMSLMNNKI--EHIAGSS--ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPS  589 (889)
T ss_pred             cccccccchhheeEEEEeccch--hhccCCC--CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCCh
Confidence            3466666777888888888888  7777654  45589999999986  566654 47789999999999876 555 99


Q ss_pred             cccCCCCcCEEEccCCCCCCCchhhcCCCCCCEEeccCCCCccccchhhhcCCCCCCeeeC
Q 037969          240 IIGKLKNLEILSFLNSDIVRLPGELGQLTKLRLLDLTDCLQLKFIVPNVLSSFTRLEELYM  300 (300)
Q Consensus       240 ~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l  300 (300)
                      .|+.|-+|++|+++++.+..+|.++++|++|.+|++..+..+..+|. +...|++|++|.+
T Consensus       590 ~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~-i~~~L~~Lr~L~l  649 (889)
T KOG4658|consen  590 SIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPG-ILLELQSLRVLRL  649 (889)
T ss_pred             HHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccc-hhhhcccccEEEe
Confidence            99999999999999999999999999999999999999987777755 3777999999864

>PLN03150 hypothetical protein; Provisional

Probab=98.83  E-value=1.1e-08  Score=96.26  Aligned_cols=97  Identities=24%  Similarity=0.350  Sum_probs=84.5

Q ss_pred             cccEEEeeCCcCCc-CCcccccCCCCcEEEccCCCCCC--cccccCCCCcCEEEccCCCCC-CCchhhcCCCCCCEEecc
Q 037969          201 TLRVIDLTRMRLFS-LPSSIGLLANLQTLCLDQSMLGD--IAIIGKLKNLEILSFLNSDIV-RLPGELGQLTKLRLLDLT  276 (300)
Q Consensus       201 ~L~~L~l~~~~~~~-lp~~i~~l~~L~~L~l~~~~l~~--p~~~~~l~~L~~L~l~~~~l~-~lp~~~~~l~~L~~L~l~  276 (300)
                      .++.|+|+++.+.. +|..++.+++|+.|+|++|.+..  |..++.+++|+.|++++|.++ .+|..++++++|++|+++
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            37889999999986 79999999999999999999985  788999999999999999988 799999999999999999


Q ss_pred             CCCCccccchhhhcCC-CCCCee
Q 037969          277 DCLQLKFIVPNVLSSF-TRLEEL  298 (300)
Q Consensus       277 ~~~~l~~lp~~~l~~L-~~L~~L  298 (300)
                      +|...+.+|.. ++.+ .++..+
T Consensus       499 ~N~l~g~iP~~-l~~~~~~~~~l  520 (623)
T PLN03150        499 GNSLSGRVPAA-LGGRLLHRASF  520 (623)
T ss_pred             CCcccccCChH-HhhccccCceE
Confidence            99977889976 5543 344443

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.81  E-value=4.3e-09  Score=91.10  Aligned_cols=147  Identities=20%  Similarity=0.257  Sum_probs=100.5

Q ss_pred             CCccEEEeecCCCcc-----cCccc-cC-CCccEEecccCccccc---cCchhHHhcCCcccEEEeeCCcCCc-----CC
Q 037969          152 KKCSAISLLNSSIHE-----VSEEF-EC-LQLEFLHISQNTFVEV---NIPDNIFKGMKTLRVIDLTRMRLFS-----LP  216 (300)
Q Consensus       152 ~~l~~L~l~~~~~~~-----~~~~~-~~-~~L~~L~l~~~~~~~~---~l~~~~~~~l~~L~~L~l~~~~~~~-----lp  216 (300)
                      ++++.|++.+|.+..     +.... .+ ++|+.|++.+|.+...   .++.. +..+.+|++|++++|.++.     ++
T Consensus       108 ~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~l~  186 (319)
T cd00116         108 SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKA-LRANRDLKELNLANNGIGDAGIRALA  186 (319)
T ss_pred             CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHH-HHhCCCcCEEECcCCCCchHHHHHHH
Confidence            448999999887742     22222 45 7899999999987210   22222 3667789999999998873     44


Q ss_pred             cccccCCCCcEEEccCCCCCC------cccccCCCCcCEEEccCCCCCCC-chhhc-----CCCCCCEEeccCCCCc---
Q 037969          217 SSIGLLANLQTLCLDQSMLGD------IAIIGKLKNLEILSFLNSDIVRL-PGELG-----QLTKLRLLDLTDCLQL---  281 (300)
Q Consensus       217 ~~i~~l~~L~~L~l~~~~l~~------p~~~~~l~~L~~L~l~~~~l~~l-p~~~~-----~l~~L~~L~l~~~~~l---  281 (300)
                      ..+..+++|++|++++|.+..      ...+..+++|++|++++|.++.. +..+.     ..+.|++|++++|...   
T Consensus       187 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~  266 (319)
T cd00116         187 EGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDG  266 (319)
T ss_pred             HHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHH
Confidence            455666799999999998764      24566788899999999987731 11221     2479999999999732   


Q ss_pred             -cccchhhhcCCCCCCeeeC
Q 037969          282 -KFIVPNVLSSFTRLEELYM  300 (300)
Q Consensus       282 -~~lp~~~l~~L~~L~~L~l  300 (300)
                       ..++.. +..+++|+.+++
T Consensus       267 ~~~l~~~-~~~~~~L~~l~l  285 (319)
T cd00116         267 AKDLAEV-LAEKESLLELDL  285 (319)
T ss_pred             HHHHHHH-HhcCCCccEEEC
Confidence             223333 566678887764

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.80  E-value=8.6e-09  Score=89.20  Aligned_cols=149  Identities=21%  Similarity=0.236  Sum_probs=103.6

Q ss_pred             ccCCccEEEeecCCCc-ccCccc-cC---CCccEEecccCccccc---cCchhHHhcC-CcccEEEeeCCcCCc-----C
Q 037969          150 ALKKCSAISLLNSSIH-EVSEEF-EC---LQLEFLHISQNTFVEV---NIPDNIFKGM-KTLRVIDLTRMRLFS-----L  215 (300)
Q Consensus       150 ~~~~l~~L~l~~~~~~-~~~~~~-~~---~~L~~L~l~~~~~~~~---~l~~~~~~~l-~~L~~L~l~~~~~~~-----l  215 (300)
                      ..++++.|+++++.+. ..+..+ .+   ++|+.|++.+|.+...   .+...+ ..+ ++|+.|++++|.++.     +
T Consensus        79 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l-~~~~~~L~~L~L~~n~l~~~~~~~~  157 (319)
T cd00116          79 KGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGL-KDLPPALEKLVLGRNRLEGASCEAL  157 (319)
T ss_pred             hcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHH-HhCCCCceEEEcCCCcCCchHHHHH
Confidence            4668999999998874 233222 33   4599999999887110   122222 455 899999999999882     4


Q ss_pred             CcccccCCCCcEEEccCCCCCC------cccccCCCCcCEEEccCCCCC-----CCchhhcCCCCCCEEeccCCCCccc-
Q 037969          216 PSSIGLLANLQTLCLDQSMLGD------IAIIGKLKNLEILSFLNSDIV-----RLPGELGQLTKLRLLDLTDCLQLKF-  283 (300)
Q Consensus       216 p~~i~~l~~L~~L~l~~~~l~~------p~~~~~l~~L~~L~l~~~~l~-----~lp~~~~~l~~L~~L~l~~~~~l~~-  283 (300)
                      +..+..+.+|++|++++|.+..      +..+..+++|++|++++|.+.     .++..+..+++|++|++++|. +.. 
T Consensus       158 ~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~-l~~~  236 (319)
T cd00116         158 AKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNN-LTDA  236 (319)
T ss_pred             HHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCc-CchH
Confidence            5556777889999999999873      244566779999999999876     344557788999999999998 442 


Q ss_pred             cchhhhcC----CCCCCeeeC
Q 037969          284 IVPNVLSS----FTRLEELYM  300 (300)
Q Consensus       284 lp~~~l~~----L~~L~~L~l  300 (300)
                      -+..+...    .+.|++|++
T Consensus       237 ~~~~l~~~~~~~~~~L~~L~l  257 (319)
T cd00116         237 GAAALASALLSPNISLLTLSL  257 (319)
T ss_pred             HHHHHHHHHhccCCCceEEEc
Confidence            12221122    367877764

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.79  E-value=5.5e-09  Score=67.05  Aligned_cols=58  Identities=33%  Similarity=0.521  Sum_probs=33.2

Q ss_pred             CccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCcCC-cccccCCCCcEEEccCCC
Q 037969          175 QLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLP-SSIGLLANLQTLCLDQSM  234 (300)
Q Consensus       175 ~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp-~~i~~l~~L~~L~l~~~~  234 (300)
                      +|+.|++.+|.+  ..+|+..|.++++|++|++++|.++.+| ..+..+++|++|++++|.
T Consensus         2 ~L~~L~l~~n~l--~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNNKL--TEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSSTE--SEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCCCCC--CccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            455556665555  5555555555666666666666665543 345555556666655554

...

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.78  E-value=1.8e-09  Score=88.85  Aligned_cols=121  Identities=26%  Similarity=0.315  Sum_probs=94.5

Q ss_pred             CCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCcCCcccccCCCCcEEEccCCCCCCccc-ccCCCCcCEEEc
Q 037969          174 LQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPSSIGLLANLQTLCLDQSMLGDIAI-IGKLKNLEILSF  252 (300)
Q Consensus       174 ~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~p~~-~~~l~~L~~L~l  252 (300)
                      ..|+.+++++|.+  ..+.++. .-.+.+++|++++|.+..+-. +..+++|+.||+++|.+....+ -.++.|.++|.+
T Consensus       284 q~LtelDLS~N~I--~~iDESv-KL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~L  359 (490)
T KOG1259|consen  284 QELTELDLSGNLI--TQIDESV-KLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKL  359 (490)
T ss_pred             hhhhhccccccch--hhhhhhh-hhccceeEEeccccceeeehh-hhhcccceEeecccchhHhhhhhHhhhcCEeeeeh
Confidence            4678888888888  7777766 667888899999888887754 7788888999999888877433 347778888999


Q ss_pred             cCCCCCCCchhhcCCCCCCEEeccCCCCccccch-hhhcCCCCCCeeeC
Q 037969          253 LNSDIVRLPGELGQLTKLRLLDLTDCLQLKFIVP-NVLSSFTRLEELYM  300 (300)
Q Consensus       253 ~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~-~~l~~L~~L~~L~l  300 (300)
                      .+|.++.+ .++++|-+|..||+++|+ +..+.. ..||+|+.|+++.|
T Consensus       360 a~N~iE~L-SGL~KLYSLvnLDl~~N~-Ie~ldeV~~IG~LPCLE~l~L  406 (490)
T KOG1259|consen  360 AQNKIETL-SGLRKLYSLVNLDLSSNQ-IEELDEVNHIGNLPCLETLRL  406 (490)
T ss_pred             hhhhHhhh-hhhHhhhhheeccccccc-hhhHHHhcccccccHHHHHhh
Confidence            98888877 478899999999999998 555432 22899998887643

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=98.75  E-value=4.7e-10  Score=95.27  Aligned_cols=140  Identities=23%  Similarity=0.312  Sum_probs=99.1

Q ss_pred             EeccccccCCCccccCCccEEEeecCCCcccCccc--cCCCccEEecccCccccccCchhHHhcCCcccEEEeeC-CcCC
Q 037969          137 VRNEVVWEWPDEDALKKCSAISLLNSSIHEVSEEF--ECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTR-MRLF  213 (300)
Q Consensus       137 ~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~-~~~~  213 (300)
                      .++.++.++|. .-......+.+..|+++.+|+..  .+++||.|+++.|.+  ..+.+..|.++..+..|-+-+ |+|+
T Consensus        53 Cr~~GL~eVP~-~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~I--s~I~p~AF~GL~~l~~Lvlyg~NkI~  129 (498)
T KOG4237|consen   53 CRGKGLTEVPA-NLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNI--SFIAPDAFKGLASLLSLVLYGNNKIT  129 (498)
T ss_pred             ccCCCcccCcc-cCCCcceEEEeccCCcccCChhhccchhhhceecccccch--hhcChHhhhhhHhhhHHHhhcCCchh
Confidence            44455666665 34455677778888887777654  777888888888877  677666677777776655554 7777


Q ss_pred             cCCcc-cccCCCCcEEEccCCCCCC--cccccCCCCcCEEEccCCCCCCCch-hhcCCCCCCEEeccCCC
Q 037969          214 SLPSS-IGLLANLQTLCLDQSMLGD--IAIIGKLKNLEILSFLNSDIVRLPG-ELGQLTKLRLLDLTDCL  279 (300)
Q Consensus       214 ~lp~~-i~~l~~L~~L~l~~~~l~~--p~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~  279 (300)
                      .+|+. ++.|..|+-|.+.-|.+..  ...+..+++|..|.+.+|.+..++. .+..+.+++++++..|.
T Consensus       130 ~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np  199 (498)
T KOG4237|consen  130 DLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNP  199 (498)
T ss_pred             hhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCc
Confidence            77654 6777777777777777665  4667777788888887777777776 46777777777776665

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.68  E-value=2e-08  Score=64.43  Aligned_cols=56  Identities=32%  Similarity=0.455  Sum_probs=32.7

Q ss_pred             cccEEEeeCCcCCcCC-cccccCCCCcEEEccCCCCCC--cccccCCCCcCEEEccCCC
Q 037969          201 TLRVIDLTRMRLFSLP-SSIGLLANLQTLCLDQSMLGD--IAIIGKLKNLEILSFLNSD  256 (300)
Q Consensus       201 ~L~~L~l~~~~~~~lp-~~i~~l~~L~~L~l~~~~l~~--p~~~~~l~~L~~L~l~~~~  256 (300)
                      +|++|++++|+++.+| ..+..+++|++|++++|.+..  +..+..+++|++|++++|+
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            4566666666666654 345556666666666666555  3455566666666666554

...

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.52  E-value=3e-08  Score=85.47  Aligned_cols=59  Identities=27%  Similarity=0.342  Sum_probs=38.8

Q ss_pred             cCCCCcEEEccCCCCCC-c--ccccCCCCcCEEEccCCCCC--CCchh-----hcCCCCCCEEeccCCC
Q 037969          221 LLANLQTLCLDQSMLGD-I--AIIGKLKNLEILSFLNSDIV--RLPGE-----LGQLTKLRLLDLTDCL  279 (300)
Q Consensus       221 ~l~~L~~L~l~~~~l~~-p--~~~~~l~~L~~L~l~~~~l~--~lp~~-----~~~l~~L~~L~l~~~~  279 (300)
                      .++.|+.|+|++|.+.. +  ...+.++.|..|+++.|.+.  .+|+.     ...+++|++|++..|+
T Consensus       244 i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~  312 (505)
T KOG3207|consen  244 ILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENN  312 (505)
T ss_pred             hhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCc
Confidence            45667777777777655 3  56677777777777777666  33433     3456777777777777

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.45  E-value=3.8e-07  Score=53.90  Aligned_cols=41  Identities=41%  Similarity=0.579  Sum_probs=28.1

Q ss_pred             CCcCEEEccCCCCCCCchhhcCCCCCCEEeccCCCCccccch
Q 037969          245 KNLEILSFLNSDIVRLPGELGQLTKLRLLDLTDCLQLKFIVP  286 (300)
Q Consensus       245 ~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~  286 (300)
                      ++|++|++++|+++.+|+.+++|++|+.|++++|+ +..+|.
T Consensus         1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~-i~~i~~   41 (44)
T PF12799_consen    1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNP-ISDISP   41 (44)
T ss_dssp             TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSC-CSBEGG
T ss_pred             CcceEEEccCCCCcccCchHhCCCCCCEEEecCCC-CCCCcC
Confidence            46777777777777777767777777777777776 555554

...

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.44  E-value=8.6e-08  Score=90.29  Aligned_cols=127  Identities=20%  Similarity=0.197  Sum_probs=90.6

Q ss_pred             CCccEEEeecCCC--cccC-ccc-cCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCcCCcccccCCCCcE
Q 037969          152 KKCSAISLLNSSI--HEVS-EEF-ECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPSSIGLLANLQT  227 (300)
Q Consensus       152 ~~l~~L~l~~~~~--~~~~-~~~-~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~  227 (300)
                      .++++|++.+...  ..=| ... .+|.|++|.+.+-.+...++ ..++.++++|+.||+++++++.+ ..++.|++|+.
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF-~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~  199 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDF-SQLCASFPNLRSLDISGTNISNL-SGISRLKNLQV  199 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhH-HHHhhccCccceeecCCCCccCc-HHHhccccHHH
Confidence            4677888877544  1111 122 68889999988766632222 23457789999999999988888 67889999999


Q ss_pred             EEccCCCCCC---cccccCCCCcCEEEccCCCCCCCch-------hhcCCCCCCEEeccCCCC
Q 037969          228 LCLDQSMLGD---IAIIGKLKNLEILSFLNSDIVRLPG-------ELGQLTKLRLLDLTDCLQ  280 (300)
Q Consensus       228 L~l~~~~l~~---p~~~~~l~~L~~L~l~~~~l~~lp~-------~~~~l~~L~~L~l~~~~~  280 (300)
                      |.+++-.+..   ...+..|++|+.||++......-+.       .-..|++||.||.+++..
T Consensus       200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi  262 (699)
T KOG3665|consen  200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDI  262 (699)
T ss_pred             HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcch
Confidence            9988887775   4778889999999998864332221       234588999999888764

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.40  E-value=5.5e-08  Score=83.90  Aligned_cols=150  Identities=21%  Similarity=0.230  Sum_probs=96.5

Q ss_pred             cccCCccEEEeecCCCc---ccCccc-cCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCc--CCcccccC
Q 037969          149 DALKKCSAISLLNSSIH---EVSEEF-ECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFS--LPSSIGLL  222 (300)
Q Consensus       149 ~~~~~l~~L~l~~~~~~---~~~~~~-~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~--lp~~i~~l  222 (300)
                      ..+++++.|+++.|-+.   .+.... .+|+|+.|+++.|.+... .....-..+.+|+.|.++.|.++.  +-...-.+
T Consensus       143 k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~-~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~f  221 (505)
T KOG3207|consen  143 KILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNF-ISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTF  221 (505)
T ss_pred             hhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCC-ccccchhhhhhhheEEeccCCCCHHHHHHHHHhC
Confidence            56777888888877662   233333 788888888887776211 111111346778888888887763  33334567


Q ss_pred             CCCcEEEccCCC-CCC-cccccCCCCcCEEEccCCCCCCCc--hhhcCCCCCCEEeccCCCCccccc--hh----hhcCC
Q 037969          223 ANLQTLCLDQSM-LGD-IAIIGKLKNLEILSFLNSDIVRLP--GELGQLTKLRLLDLTDCLQLKFIV--PN----VLSSF  292 (300)
Q Consensus       223 ~~L~~L~l~~~~-l~~-p~~~~~l~~L~~L~l~~~~l~~lp--~~~~~l~~L~~L~l~~~~~l~~lp--~~----~l~~L  292 (300)
                      ++|..|++.+|. +.. -....-++.|+.|+|++|++-.++  .-++.++.|+.|.++.|. +.++.  +.    ....+
T Consensus       222 Psl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tg-i~si~~~d~~s~~kt~~f  300 (505)
T KOG3207|consen  222 PSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTG-IASIAEPDVESLDKTHTF  300 (505)
T ss_pred             CcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccC-cchhcCCCccchhhhccc
Confidence            788888888884 222 233345677899999999877666  347889999999998887 44432  10    02456


Q ss_pred             CCCCeeeC
Q 037969          293 TRLEELYM  300 (300)
Q Consensus       293 ~~L~~L~l  300 (300)
                      ++|+.|++
T Consensus       301 ~kL~~L~i  308 (505)
T KOG3207|consen  301 PKLEYLNI  308 (505)
T ss_pred             ccceeeec
Confidence            67776653

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.38  E-value=2.3e-07  Score=87.42  Aligned_cols=128  Identities=22%  Similarity=0.261  Sum_probs=98.8

Q ss_pred             cCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCc--CCcccccCCCCcEEEccCCCCCCcccccCCCCcCE
Q 037969          172 ECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFS--LPSSIGLLANLQTLCLDQSMLGDIAIIGKLKNLEI  249 (300)
Q Consensus       172 ~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~--lp~~i~~l~~L~~L~l~~~~l~~p~~~~~l~~L~~  249 (300)
                      .-.+|+.|++.|........|..+...+|.|+.|.+.+-.+..  +-.-..++++|..||++++.++...+++.|++|+.
T Consensus       120 sr~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~  199 (699)
T KOG3665|consen  120 SRQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQV  199 (699)
T ss_pred             HHHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccccHHH
Confidence            3468999999998776677777787789999999999876643  33445688999999999999998999999999999


Q ss_pred             EEccCCCCCCCc--hhhcCCCCCCEEeccCCCCcccc--ch---hhhcCCCCCCeee
Q 037969          250 LSFLNSDIVRLP--GELGQLTKLRLLDLTDCLQLKFI--VP---NVLSSFTRLEELY  299 (300)
Q Consensus       250 L~l~~~~l~~lp--~~~~~l~~L~~L~l~~~~~l~~l--p~---~~l~~L~~L~~L~  299 (300)
                      |.+++=.++.-+  ..+.+|++|+.||++..+.....  ..   +.-..|++|+.|+
T Consensus       200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLD  256 (699)
T KOG3665|consen  200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLD  256 (699)
T ss_pred             HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEe
Confidence            999876665322  35889999999999987643322  11   1123478888876

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=98.38  E-value=6.5e-07  Score=69.85  Aligned_cols=103  Identities=20%  Similarity=0.350  Sum_probs=72.0

Q ss_pred             cCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCcCCcccc-cCCCCcEEEccCCCCCC---cccccCCCCc
Q 037969          172 ECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPSSIG-LLANLQTLCLDQSMLGD---IAIIGKLKNL  247 (300)
Q Consensus       172 ~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~i~-~l~~L~~L~l~~~~l~~---p~~~~~l~~L  247 (300)
                      -..+...+++.+|.+  ..++.  |..++.|.+|.+++|+|+.+-+.++ .+++|+.|.+.+|++..   ...+..++.|
T Consensus        40 ~~d~~d~iDLtdNdl--~~l~~--lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L  115 (233)
T KOG1644|consen   40 TLDQFDAIDLTDNDL--RKLDN--LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKL  115 (233)
T ss_pred             cccccceecccccch--hhccc--CCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCcc
Confidence            344566777777777  66655  5677888888888888887644443 45668888888887665   4666777788


Q ss_pred             CEEEccCCCCCCCchh----hcCCCCCCEEeccCC
Q 037969          248 EILSFLNSDIVRLPGE----LGQLTKLRLLDLTDC  278 (300)
Q Consensus       248 ~~L~l~~~~l~~lp~~----~~~l~~L~~L~l~~~  278 (300)
                      ++|.+-+|.++.-+.-    +..+++|+.||...-
T Consensus       116 ~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kV  150 (233)
T KOG1644|consen  116 EYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV  150 (233)
T ss_pred             ceeeecCCchhcccCceeEEEEecCcceEeehhhh
Confidence            8888888777655432    667788888887653

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.34  E-value=7.6e-07  Score=52.59  Aligned_cols=36  Identities=31%  Similarity=0.505  Sum_probs=16.4

Q ss_pred             cccEEEeeCCcCCcCCcccccCCCCcEEEccCCCCC
Q 037969          201 TLRVIDLTRMRLFSLPSSIGLLANLQTLCLDQSMLG  236 (300)
Q Consensus       201 ~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~  236 (300)
                      +|++|++++|+++.+|+.++++++|++|++++|.++
T Consensus         2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCC
Confidence            344445555554444444444444444444444443

...

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.28  E-value=8.7e-08  Score=86.06  Aligned_cols=82  Identities=21%  Similarity=0.311  Sum_probs=38.1

Q ss_pred             cccCCccEEEeecCCCcccCccccCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCcCCcc-cccCCCCcE
Q 037969          149 DALKKCSAISLLNSSIHEVSEEFECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPSS-IGLLANLQT  227 (300)
Q Consensus       149 ~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~-i~~l~~L~~  227 (300)
                      ..+.+++.|++++|.+..+.....++.|+.|++.+|.+  ..+..  +..+..|+.+++++|.+..+... ...+..++.
T Consensus       115 ~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~N~i--~~~~~--~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~  190 (414)
T KOG0531|consen  115 SSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLSGNLI--SDISG--LESLKSLKLLDLSYNRIVDIENDELSELISLEE  190 (414)
T ss_pred             hhhhcchheeccccccccccchhhccchhhheeccCcc--hhccC--CccchhhhcccCCcchhhhhhhhhhhhccchHH
Confidence            33444555555555554444444444455555555554  44333  23344555555555555444321 234444444


Q ss_pred             EEccCCC
Q 037969          228 LCLDQSM  234 (300)
Q Consensus       228 L~l~~~~  234 (300)
                      +.+.+|.
T Consensus       191 l~l~~n~  197 (414)
T KOG0531|consen  191 LDLGGNS  197 (414)
T ss_pred             HhccCCc
Confidence            4444444

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.24  E-value=7.5e-08  Score=70.46  Aligned_cols=108  Identities=16%  Similarity=0.270  Sum_probs=81.9

Q ss_pred             ccEEEeecCCCcccCccc----cCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCcCCcccccCCCCcEEE
Q 037969          154 CSAISLLNSSIHEVSEEF----ECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPSSIGLLANLQTLC  229 (300)
Q Consensus       154 l~~L~l~~~~~~~~~~~~----~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~  229 (300)
                      +..++++.|.+..+++..    ....|...++++|.+  ..+|+.+-..++.+..|++++|.+.++|..+..++.|+.|+
T Consensus        29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~f--k~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lN  106 (177)
T KOG4579|consen   29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGF--KKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLN  106 (177)
T ss_pred             hhhcccccchhhHHHHHHHHHhCCceEEEEecccchh--hhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcc
Confidence            344566666654444432    445667778888888  88888775566788888888888888888888888888888


Q ss_pred             ccCCCCCC-cccccCCCCcCEEEccCCCCCCCchh
Q 037969          230 LDQSMLGD-IAIIGKLKNLEILSFLNSDIVRLPGE  263 (300)
Q Consensus       230 l~~~~l~~-p~~~~~l~~L~~L~l~~~~l~~lp~~  263 (300)
                      ++.|.+.. |..+..|.+|-.|+..++...++|-.
T Consensus       107 l~~N~l~~~p~vi~~L~~l~~Lds~~na~~eid~d  141 (177)
T KOG4579|consen  107 LRFNPLNAEPRVIAPLIKLDMLDSPENARAEIDVD  141 (177)
T ss_pred             cccCccccchHHHHHHHhHHHhcCCCCccccCcHH
Confidence            88888877 87777788888888888877777765

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.23  E-value=2.4e-07  Score=83.27  Aligned_cols=125  Identities=25%  Similarity=0.356  Sum_probs=98.5

Q ss_pred             cCCccEEEeecCCCcccCc-cccCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCcCCcccccCCCCcEEE
Q 037969          151 LKKCSAISLLNSSIHEVSE-EFECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPSSIGLLANLQTLC  229 (300)
Q Consensus       151 ~~~l~~L~l~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~  229 (300)
                      +..+..+++..+.+..+-. ...+.+++.+++.+|.+  ..+...+ ..+.+|++|++++|.|+++. .+..+..|+.|+
T Consensus        71 l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i--~~i~~~l-~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~  146 (414)
T KOG0531|consen   71 LTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKI--EKIENLL-SSLVNLQVLDLSFNKITKLE-GLSTLTLLKELN  146 (414)
T ss_pred             hHhHHhhccchhhhhhhhcccccccceeeeeccccch--hhcccch-hhhhcchheecccccccccc-chhhccchhhhe
Confidence            4455666677777755333 44788899999999988  6666533 67899999999999998874 366777799999


Q ss_pred             ccCCCCCCcccccCCCCcCEEEccCCCCCCCchh-hcCCCCCCEEeccCCC
Q 037969          230 LDQSMLGDIAIIGKLKNLEILSFLNSDIVRLPGE-LGQLTKLRLLDLTDCL  279 (300)
Q Consensus       230 l~~~~l~~p~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~  279 (300)
                      +.+|.+...+.+..+++|+.+++++|.+..+... ...+.+++.+++.+|.
T Consensus       147 l~~N~i~~~~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~  197 (414)
T KOG0531|consen  147 LSGNLISDISGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNS  197 (414)
T ss_pred             eccCcchhccCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCc
Confidence            9999988877777899999999999988877653 5788899999998887

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.22  E-value=1.5e-07  Score=68.95  Aligned_cols=111  Identities=21%  Similarity=0.269  Sum_probs=91.5

Q ss_pred             CCccEEecccCccccccCchhH--HhcCCcccEEEeeCCcCCcCCccccc-CCCCcEEEccCCCCCC-cccccCCCCcCE
Q 037969          174 LQLEFLHISQNTFVEVNIPDNI--FKGMKTLRVIDLTRMRLFSLPSSIGL-LANLQTLCLDQSMLGD-IAIIGKLKNLEI  249 (300)
Q Consensus       174 ~~L~~L~l~~~~~~~~~l~~~~--~~~l~~L~~L~l~~~~~~~lp~~i~~-l~~L~~L~l~~~~l~~-p~~~~~l~~L~~  249 (300)
                      ..+..++++.|++  ..+++..  .....+|...+|++|.+.++|+.+.. ++....+++.+|.+.+ |..+..++.|+.
T Consensus        27 kE~h~ldLssc~l--m~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~  104 (177)
T KOG4579|consen   27 KELHFLDLSSCQL--MYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRS  104 (177)
T ss_pred             HHhhhcccccchh--hHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhh
Confidence            3456678888887  6666533  24556788899999999999988754 4589999999999999 988999999999


Q ss_pred             EEccCCCCCCCchhhcCCCCCCEEeccCCCCccccchh
Q 037969          250 LSFLNSDIVRLPGELGQLTKLRLLDLTDCLQLKFIVPN  287 (300)
Q Consensus       250 L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~  287 (300)
                      |+++.|.+...|+-+..|.+|..|+..++. ...+|-.
T Consensus       105 lNl~~N~l~~~p~vi~~L~~l~~Lds~~na-~~eid~d  141 (177)
T KOG4579|consen  105 LNLRFNPLNAEPRVIAPLIKLDMLDSPENA-RAEIDVD  141 (177)
T ss_pred             cccccCccccchHHHHHHHhHHHhcCCCCc-cccCcHH
Confidence            999999999999999999999999998887 5566543

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.19  E-value=2.2e-08  Score=91.45  Aligned_cols=129  Identities=25%  Similarity=0.230  Sum_probs=94.2

Q ss_pred             cCCccEEEeecCCCcccCccc-cCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCcCCcccccCCCCcEEE
Q 037969          151 LKKCSAISLLNSSIHEVSEEF-ECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPSSIGLLANLQTLC  229 (300)
Q Consensus       151 ~~~l~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~  229 (300)
                      +..+...+.+.|.+..+.... -++.++.|+++.|++  .... . +..+++|+.|||++|.++.+|.--..=..|+.|.
T Consensus       163 Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~--~~v~-~-Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~  238 (1096)
T KOG1859|consen  163 WNKLATASFSYNRLVLMDESLQLLPALESLNLSHNKF--TKVD-N-LRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLN  238 (1096)
T ss_pred             hhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhh--hhhH-H-HHhcccccccccccchhccccccchhhhhheeee
Confidence            445666677777776555555 567888899998888  5554 3 4788899999999998888775322223488899


Q ss_pred             ccCCCCCCcccccCCCCcCEEEccCCCCC---CCchhhcCCCCCCEEeccCCCCccccc
Q 037969          230 LDQSMLGDIAIIGKLKNLEILSFLNSDIV---RLPGELGQLTKLRLLDLTDCLQLKFIV  285 (300)
Q Consensus       230 l~~~~l~~p~~~~~l~~L~~L~l~~~~l~---~lp~~~~~l~~L~~L~l~~~~~l~~lp  285 (300)
                      +++|.+...-++.+|.+|+.||+++|-+.   ++ ..++.|..|+.|+|.+|+ +..-|
T Consensus       239 lrnN~l~tL~gie~LksL~~LDlsyNll~~hseL-~pLwsLs~L~~L~LeGNP-l~c~p  295 (1096)
T KOG1859|consen  239 LRNNALTTLRGIENLKSLYGLDLSYNLLSEHSEL-EPLWSLSSLIVLWLEGNP-LCCAP  295 (1096)
T ss_pred             ecccHHHhhhhHHhhhhhhccchhHhhhhcchhh-hHHHHHHHHHHHhhcCCc-cccCH
Confidence            99988887777888889999999888555   33 236677888888888887 44433

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.15  E-value=1.1e-05  Score=70.82  Aligned_cols=32  Identities=25%  Similarity=0.295  Sum_probs=21.6

Q ss_pred             CCcCEEEccCCCCCCCchhhcCCCCCCEEeccCC
Q 037969          245 KNLEILSFLNSDIVRLPGELGQLTKLRLLDLTDC  278 (300)
Q Consensus       245 ~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~  278 (300)
                      ++|++|++++|....+|..+.  .+|++|+++.+
T Consensus       156 sSLk~L~Is~c~~i~LP~~LP--~SLk~L~ls~n  187 (426)
T PRK15386        156 PSLKTLSLTGCSNIILPEKLP--ESLQSITLHIE  187 (426)
T ss_pred             CcccEEEecCCCcccCccccc--ccCcEEEeccc
Confidence            468888888886655665443  47777777654

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.02  E-value=2e-07  Score=85.44  Aligned_cols=99  Identities=21%  Similarity=0.308  Sum_probs=68.1

Q ss_pred             CccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCcCCcccccCCCCcEEEccCCCCCCcccc--cCCCCcCEEEc
Q 037969          175 QLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPSSIGLLANLQTLCLDQSMLGDIAII--GKLKNLEILSF  252 (300)
Q Consensus       175 ~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~p~~~--~~l~~L~~L~l  252 (300)
                      .|.+.++++|.+  ..+..++ .-++.++.|+|++|+++++- .+..++.|++|||++|.+...+.+  ..+ .|+.|.+
T Consensus       165 ~L~~a~fsyN~L--~~mD~SL-qll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~l  239 (1096)
T KOG1859|consen  165 KLATASFSYNRL--VLMDESL-QLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNL  239 (1096)
T ss_pred             hHhhhhcchhhH--HhHHHHH-HHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhh-hheeeee
Confidence            344445555555  4444443 56677888888888887764 677788888888888887762222  222 3888888


Q ss_pred             cCCCCCCCchhhcCCCCCCEEeccCCC
Q 037969          253 LNSDIVRLPGELGQLTKLRLLDLTDCL  279 (300)
Q Consensus       253 ~~~~l~~lp~~~~~l~~L~~L~l~~~~  279 (300)
                      ++|.++++ .++.+|.+|+.||++.|-
T Consensus       240 rnN~l~tL-~gie~LksL~~LDlsyNl  265 (1096)
T KOG1859|consen  240 RNNALTTL-RGIENLKSLYGLDLSYNL  265 (1096)
T ss_pred             cccHHHhh-hhHHhhhhhhccchhHhh
Confidence            88888877 468888888888888775

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.96  E-value=2.6e-05  Score=68.50  Aligned_cols=117  Identities=18%  Similarity=0.294  Sum_probs=77.4

Q ss_pred             cCCccEEEeecCCCcccCccccCCCccEEecccCccccccCchhHHhcCCcccEEEeeCC-cCCcCCcccccCCCCcEEE
Q 037969          151 LKKCSAISLLNSSIHEVSEEFECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRM-RLFSLPSSIGLLANLQTLC  229 (300)
Q Consensus       151 ~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~-~~~~lp~~i~~l~~L~~L~  229 (300)
                      ..+++.|++++|.+..+|..  -++|++|.+.+|..+ ..+|+.+   ..+|++|.+++| .+..+|+.      |+.|+
T Consensus        51 ~~~l~~L~Is~c~L~sLP~L--P~sLtsL~Lsnc~nL-tsLP~~L---P~nLe~L~Ls~Cs~L~sLP~s------Le~L~  118 (426)
T PRK15386         51 ARASGRLYIKDCDIESLPVL--PNELTEITIENCNNL-TTLPGSI---PEGLEKLTVCHCPEISGLPES------VRSLE  118 (426)
T ss_pred             hcCCCEEEeCCCCCcccCCC--CCCCcEEEccCCCCc-ccCCchh---hhhhhheEccCcccccccccc------cceEE
Confidence            46688999999988888832  236999999876553 6677654   368999999988 67667754      66677


Q ss_pred             ccCCCCCCcccccCC-CCcCEEEccCCC-C--CCCchhhcCC-CCCCEEeccCCCCccccch
Q 037969          230 LDQSMLGDIAIIGKL-KNLEILSFLNSD-I--VRLPGELGQL-TKLRLLDLTDCLQLKFIVP  286 (300)
Q Consensus       230 l~~~~l~~p~~~~~l-~~L~~L~l~~~~-l--~~lp~~~~~l-~~L~~L~l~~~~~l~~lp~  286 (300)
                      +.++....   +..+ ++|+.|.+.+++ .  ..+|.   .+ ++|++|++++|..+ .+|.
T Consensus       119 L~~n~~~~---L~~LPssLk~L~I~~~n~~~~~~lp~---~LPsSLk~L~Is~c~~i-~LP~  173 (426)
T PRK15386        119 IKGSATDS---IKNVPNGLTSLSINSYNPENQARIDN---LISPSLKTLSLTGCSNI-ILPE  173 (426)
T ss_pred             eCCCCCcc---cccCcchHhheecccccccccccccc---ccCCcccEEEecCCCcc-cCcc
Confidence            76654322   2223 257777775432 1  12221   23 58999999999843 4454

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.79  E-value=8.1e-05  Score=58.40  Aligned_cols=100  Identities=19%  Similarity=0.246  Sum_probs=82.9

Q ss_pred             CccEEEeecCCCcccCccccCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCcCC--cccccCCCCcEEEc
Q 037969          153 KCSAISLLNSSIHEVSEEFECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLP--SSIGLLANLQTLCL  230 (300)
Q Consensus       153 ~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp--~~i~~l~~L~~L~l  230 (300)
                      ....+++.+|.+..++....++.|.+|.+..|.+  ..+.+.+...+++|.+|.|.+|++.++.  ..+..++.|++|.+
T Consensus        43 ~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrI--t~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl  120 (233)
T KOG1644|consen   43 QFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRI--TRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL  120 (233)
T ss_pred             ccceecccccchhhcccCCCccccceEEecCCcc--eeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence            4567889999988888877899999999999999  8888877667788999999999988753  23556789999999


Q ss_pred             cCCCCCC-----cccccCCCCcCEEEccC
Q 037969          231 DQSMLGD-----IAIIGKLKNLEILSFLN  254 (300)
Q Consensus       231 ~~~~l~~-----p~~~~~l~~L~~L~l~~  254 (300)
                      -+|.+..     .--+.++++|++||.++
T Consensus       121 l~Npv~~k~~YR~yvl~klp~l~~LDF~k  149 (233)
T KOG1644|consen  121 LGNPVEHKKNYRLYVLYKLPSLRTLDFQK  149 (233)
T ss_pred             cCCchhcccCceeEEEEecCcceEeehhh
Confidence            9998765     35678999999999875

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=97.72  E-value=2e-05  Score=66.64  Aligned_cols=130  Identities=18%  Similarity=0.239  Sum_probs=96.6

Q ss_pred             ccCCccEEEeecCCCcccCc-----cc-cCCCccEEecccCccccccC--chhHHhcCCcccEEEeeCCcCCc-----CC
Q 037969          150 ALKKCSAISLLNSSIHEVSE-----EF-ECLQLEFLHISQNTFVEVNI--PDNIFKGMKTLRVIDLTRMRLFS-----LP  216 (300)
Q Consensus       150 ~~~~l~~L~l~~~~~~~~~~-----~~-~~~~L~~L~l~~~~~~~~~l--~~~~~~~l~~L~~L~l~~~~~~~-----lp  216 (300)
                      ..+.+|.+..+.|.+..-+.     .+ ..+.|+.+.+..|.+....+  -..-+..+++|++|||+.|.++.     +.
T Consensus       155 ~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~La  234 (382)
T KOG1909|consen  155 SKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALA  234 (382)
T ss_pred             CCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHH
Confidence            34578899998888744332     23 55789999998887722111  11224788999999999998874     45


Q ss_pred             cccccCCCCcEEEccCCCCCC--c----ccc-cCCCCcCEEEccCCCCC-----CCchhhcCCCCCCEEeccCCC
Q 037969          217 SSIGLLANLQTLCLDQSMLGD--I----AII-GKLKNLEILSFLNSDIV-----RLPGELGQLTKLRLLDLTDCL  279 (300)
Q Consensus       217 ~~i~~l~~L~~L~l~~~~l~~--p----~~~-~~l~~L~~L~l~~~~l~-----~lp~~~~~l~~L~~L~l~~~~  279 (300)
                      +.++.+++|+.|++++|.++.  -    ..+ ...++|++|.+.+|.++     .+..++...+.|+.|.+++|+
T Consensus       235 kaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~  309 (382)
T KOG1909|consen  235 KALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNR  309 (382)
T ss_pred             HHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence            667888999999999999875  2    222 24689999999999887     344567788999999999998

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=97.66  E-value=3.4e-06  Score=69.80  Aligned_cols=127  Identities=20%  Similarity=0.223  Sum_probs=56.4

Q ss_pred             cCCccEEEeecCCC-cccCccc-cCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCc--C---CcccccCC
Q 037969          151 LKKCSAISLLNSSI-HEVSEEF-ECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFS--L---PSSIGLLA  223 (300)
Q Consensus       151 ~~~l~~L~l~~~~~-~~~~~~~-~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~--l---p~~i~~l~  223 (300)
                      .++++.|++.++.+ +.+...+ +-.+|+.|+++.+.-....--.-++.+++.|..|++++|.+..  +   -..|+  .
T Consensus       209 C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~his--e  286 (419)
T KOG2120|consen  209 CSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHIS--E  286 (419)
T ss_pred             HHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhc--h
Confidence            34455555555555 2222222 4456666666654432222222334566666666666664432  0   01111  2


Q ss_pred             CCcEEEccCCC--CCC--ccc-ccCCCCcCEEEccCC-CCC-CCchhhcCCCCCCEEeccCCC
Q 037969          224 NLQTLCLDQSM--LGD--IAI-IGKLKNLEILSFLNS-DIV-RLPGELGQLTKLRLLDLTDCL  279 (300)
Q Consensus       224 ~L~~L~l~~~~--l~~--p~~-~~~l~~L~~L~l~~~-~l~-~lp~~~~~l~~L~~L~l~~~~  279 (300)
                      +|..|+++|+.  +..  ... ...+++|..|++++| .++ ..-..+.+++.|++|.++.|.
T Consensus       287 ~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY  349 (419)
T KOG2120|consen  287 TLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCY  349 (419)
T ss_pred             hhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhc
Confidence            33444444433  111  111 234555555555555 333 222334555555555555554

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=97.47  E-value=6.6e-05  Score=63.52  Aligned_cols=106  Identities=16%  Similarity=0.178  Sum_probs=59.1

Q ss_pred             cCCCccEEecccCccccccCch----hHHhcCCcccEEEeeCCcCCc-----CCcccccCCCCcEEEccCCCCCC-----
Q 037969          172 ECLQLEFLHISQNTFVEVNIPD----NIFKGMKTLRVIDLTRMRLFS-----LPSSIGLLANLQTLCLDQSMLGD-----  237 (300)
Q Consensus       172 ~~~~L~~L~l~~~~~~~~~l~~----~~~~~l~~L~~L~l~~~~~~~-----lp~~i~~l~~L~~L~l~~~~l~~-----  237 (300)
                      .-++||++....|.+  ..-+.    ..|...+.|+.+.+..|.|..     +...+...++|+.||+++|.++.     
T Consensus       155 ~~~~Lrv~i~~rNrl--en~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~  232 (382)
T KOG1909|consen  155 SKPKLRVFICGRNRL--ENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVA  232 (382)
T ss_pred             CCcceEEEEeecccc--ccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHH
Confidence            445666666666655  33222    224455666666666665542     23345566667777777776553     


Q ss_pred             -cccccCCCCcCEEEccCCCCCC-----Cchhh-cCCCCCCEEeccCCC
Q 037969          238 -IAIIGKLKNLEILSFLNSDIVR-----LPGEL-GQLTKLRLLDLTDCL  279 (300)
Q Consensus       238 -p~~~~~l~~L~~L~l~~~~l~~-----lp~~~-~~l~~L~~L~l~~~~  279 (300)
                       -..+..+++|+.|++++|.++.     +-..+ ...++|+.|.+.+|.
T Consensus       233 LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNe  281 (382)
T KOG1909|consen  233 LAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNE  281 (382)
T ss_pred             HHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcch
Confidence             1455566667777777766551     22222 224667777776665

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.46  E-value=5.1e-05  Score=61.77  Aligned_cols=61  Identities=23%  Similarity=0.364  Sum_probs=26.9

Q ss_pred             cCCcccEEEeeCC--cCCc-CCcccccCCCCcEEEccCCCCCC---cccccCCCCcCEEEccCCCCC
Q 037969          198 GMKTLRVIDLTRM--RLFS-LPSSIGLLANLQTLCLDQSMLGD---IAIIGKLKNLEILSFLNSDIV  258 (300)
Q Consensus       198 ~l~~L~~L~l~~~--~~~~-lp~~i~~l~~L~~L~l~~~~l~~---p~~~~~l~~L~~L~l~~~~l~  258 (300)
                      .+++|+.|.++.|  ++.. ++...-.+++|+++++++|.++.   ......+++|..|++..|..+
T Consensus        63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~  129 (260)
T KOG2739|consen   63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVT  129 (260)
T ss_pred             CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCcc
Confidence            3444455555444  2221 22223333555555555555443   233344445555555555444

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=97.42  E-value=5.3e-06  Score=68.70  Aligned_cols=146  Identities=19%  Similarity=0.212  Sum_probs=99.2

Q ss_pred             CccEEEeecCCCc--ccCccc-cCCCccEEecccCccccccCchhHHhcCCcccEEEeeCC-cCCcC--CcccccCCCCc
Q 037969          153 KCSAISLLNSSIH--EVSEEF-ECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRM-RLFSL--PSSIGLLANLQ  226 (300)
Q Consensus       153 ~l~~L~l~~~~~~--~~~~~~-~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~-~~~~l--p~~i~~l~~L~  226 (300)
                      .+++++++...+.  .+.... .|.+|+.|.+.|+.+ ...+-..+ ..-.+|+.|+++++ .+++.  ---+.+++.|.
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~L-dD~I~~~i-AkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~  263 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRL-DDPIVNTI-AKNSNLVRLNLSMCSGFTENALQLLLSSCSRLD  263 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhcccccccc-CcHHHHHH-hccccceeeccccccccchhHHHHHHHhhhhHh
Confidence            4678888877763  333333 788999999998887 23344444 55678999999987 45542  23367889999


Q ss_pred             EEEccCCCCCCc--c-cccC-CCCcCEEEccCC--CCC--CCchhhcCCCCCCEEeccCCCCccccchhhhcCCCCCCee
Q 037969          227 TLCLDQSMLGDI--A-IIGK-LKNLEILSFLNS--DIV--RLPGELGQLTKLRLLDLTDCLQLKFIVPNVLSSFTRLEEL  298 (300)
Q Consensus       227 ~L~l~~~~l~~p--~-~~~~-l~~L~~L~l~~~--~l~--~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L  298 (300)
                      .|++++|.+..+  . .+.. -++|..|+++||  ++.  .+..-..+.++|.+||+++|..++.--...+.+++.|++|
T Consensus       264 ~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~l  343 (419)
T KOG2120|consen  264 ELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHL  343 (419)
T ss_pred             hcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheee
Confidence            999999987652  1 1111 257899999998  332  2222256789999999999976664322236677777777


Q ss_pred             eC
Q 037969          299 YM  300 (300)
Q Consensus       299 ~l  300 (300)
                      .+
T Consensus       344 Sl  345 (419)
T KOG2120|consen  344 SL  345 (419)
T ss_pred             eh
Confidence            54

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.38  E-value=1.2e-05  Score=65.95  Aligned_cols=78  Identities=19%  Similarity=0.240  Sum_probs=41.1

Q ss_pred             CCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCcCCcccccCCCCcEEEccCCCCCC---cccccCCCCcCE
Q 037969          173 CLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPSSIGLLANLQTLCLDQSMLGD---IAIIGKLKNLEI  249 (300)
Q Consensus       173 ~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~---p~~~~~l~~L~~  249 (300)
                      +.+.+.|+..||.+  ..+  +++..|+.|.+|.|+-|.|+++. .+...++|+.|.|+.|.+..   ..-+.++++|++
T Consensus        18 l~~vkKLNcwg~~L--~DI--sic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~   92 (388)
T KOG2123|consen   18 LENVKKLNCWGCGL--DDI--SICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRT   92 (388)
T ss_pred             HHHhhhhcccCCCc--cHH--HHHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhh
Confidence            34455555555555  333  23455666666666666665552 24455555666665555554   233445555555


Q ss_pred             EEccCC
Q 037969          250 LSFLNS  255 (300)
Q Consensus       250 L~l~~~  255 (300)
                      |-|..|
T Consensus        93 LWL~EN   98 (388)
T KOG2123|consen   93 LWLDEN   98 (388)
T ss_pred             HhhccC
Confidence            555444

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.37  E-value=6.2e-05  Score=62.52  Aligned_cols=162  Identities=12%  Similarity=0.199  Sum_probs=97.6

Q ss_pred             EeccccccCCCc----cccCCccEEEeecCCCc-ccCcc-ccCCCccEEecccCccccccCchhHHhcCCcccEEEeeCC
Q 037969          137 VRNEVVWEWPDE----DALKKCSAISLLNSSIH-EVSEE-FECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRM  210 (300)
Q Consensus       137 ~~~~~~~~~~~~----~~~~~l~~L~l~~~~~~-~~~~~-~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~  210 (300)
                      ...+.+..|...    ..++.++.|+++.|.+. .+... ....+|++|.+.|..+..... .+....++.++.|+++.|
T Consensus        78 L~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~-~s~l~~lP~vtelHmS~N  156 (418)
T KOG2982|consen   78 LTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQS-TSSLDDLPKVTELHMSDN  156 (418)
T ss_pred             cccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhh-hhhhhcchhhhhhhhccc
Confidence            344445555543    56778888888888772 22222 366788888888766521222 333466777777777776


Q ss_pred             cCCcC---Cccc---------------------------ccCCCCcEEEccCCCCCC---cccccCCCCcCEEEccCCCC
Q 037969          211 RLFSL---PSSI---------------------------GLLANLQTLCLDQSMLGD---IAIIGKLKNLEILSFLNSDI  257 (300)
Q Consensus       211 ~~~~l---p~~i---------------------------~~l~~L~~L~l~~~~l~~---p~~~~~l~~L~~L~l~~~~l  257 (300)
                      ++..+   -+.+                           .-++++..+.+..|.++.   -++...++.+-.|+++.+++
T Consensus       157 ~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~i  236 (418)
T KOG2982|consen  157 SLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNI  236 (418)
T ss_pred             hhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhccccc
Confidence            43321   0001                           123455555555555544   24555677777888888877


Q ss_pred             CCCc--hhhcCCCCCCEEeccCCCCccccchh-----hhcCCCCCCeee
Q 037969          258 VRLP--GELGQLTKLRLLDLTDCLQLKFIVPN-----VLSSFTRLEELY  299 (300)
Q Consensus       258 ~~lp--~~~~~l~~L~~L~l~~~~~l~~lp~~-----~l~~L~~L~~L~  299 (300)
                      ....  ..+..++.|+.|.+.+++....+..+     .++.|++++.|+
T Consensus       237 dswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLN  285 (418)
T KOG2982|consen  237 DSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLN  285 (418)
T ss_pred             ccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEec
Confidence            6432  35778889999999988865544321     367788887764

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.22  E-value=0.00017  Score=58.82  Aligned_cols=98  Identities=23%  Similarity=0.346  Sum_probs=66.7

Q ss_pred             CCcccEEEeeCCcCCcCCcccccCCCCcEEEccCC--CCCC--cccccCCCCcCEEEccCCCCC---CCchhhcCCCCCC
Q 037969          199 MKTLRVIDLTRMRLFSLPSSIGLLANLQTLCLDQS--MLGD--IAIIGKLKNLEILSFLNSDIV---RLPGELGQLTKLR  271 (300)
Q Consensus       199 l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~--~l~~--p~~~~~l~~L~~L~l~~~~l~---~lp~~~~~l~~L~  271 (300)
                      +..|+.|++.+..++++ ..+..|++|++|.++.|  .+..  +....++++|++|++++|.+.   .++ ...++.+|.
T Consensus        42 ~~~le~ls~~n~gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~-pl~~l~nL~  119 (260)
T KOG2739|consen   42 FVELELLSVINVGLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLR-PLKELENLK  119 (260)
T ss_pred             ccchhhhhhhccceeec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccc-hhhhhcchh
Confidence            34455555555555443 23446789999999999  4443  344456699999999999776   443 467888999


Q ss_pred             EEeccCCCCccccc---hhhhcCCCCCCeee
Q 037969          272 LLDLTDCLQLKFIV---PNVLSSFTRLEELY  299 (300)
Q Consensus       272 ~L~l~~~~~l~~lp---~~~l~~L~~L~~L~  299 (300)
                      .|++..|.... +-   ..++.-+++|+.|+
T Consensus       120 ~Ldl~n~~~~~-l~dyre~vf~ll~~L~~LD  149 (260)
T KOG2739|consen  120 SLDLFNCSVTN-LDDYREKVFLLLPSLKYLD  149 (260)
T ss_pred             hhhcccCCccc-cccHHHHHHHHhhhhcccc
Confidence            99999997433 32   34466678887764

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.14  E-value=0.00015  Score=60.25  Aligned_cols=124  Identities=19%  Similarity=0.221  Sum_probs=82.1

Q ss_pred             ccEEEeecCCCcccCcc---c-cCCCccEEecccCccccccCch--hHHhcCCcccEEEeeCCcCCcCCccc-ccCCCCc
Q 037969          154 CSAISLLNSSIHEVSEE---F-ECLQLEFLHISQNTFVEVNIPD--NIFKGMKTLRVIDLTRMRLFSLPSSI-GLLANLQ  226 (300)
Q Consensus       154 l~~L~l~~~~~~~~~~~---~-~~~~L~~L~l~~~~~~~~~l~~--~~~~~l~~L~~L~l~~~~~~~lp~~i-~~l~~L~  226 (300)
                      +..+.+-++.+......   . .++.++.+++.+|.+  ....+  .++.+++.|++|+++.|++...-.+. -.+.+|+
T Consensus        47 ~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~i--SdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~  124 (418)
T KOG2982|consen   47 LELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLI--SDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLR  124 (418)
T ss_pred             hhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchh--ccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceE
Confidence            33455555655433322   1 677889999999888  44332  45678899999999999876533333 3667899


Q ss_pred             EEEccCCCCCC---cccccCCCCcCEEEccCCCCCCCc---hhhcCC-CCCCEEeccCCC
Q 037969          227 TLCLDQSMLGD---IAIIGKLKNLEILSFLNSDIVRLP---GELGQL-TKLRLLDLTDCL  279 (300)
Q Consensus       227 ~L~l~~~~l~~---p~~~~~l~~L~~L~l~~~~l~~lp---~~~~~l-~~L~~L~l~~~~  279 (300)
                      +|.|.++.+..   -..+..+|.++.|.++.|+++.+-   .++... +.+++|+...|.
T Consensus       125 ~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~  184 (418)
T KOG2982|consen  125 VLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCL  184 (418)
T ss_pred             EEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcH
Confidence            99999888764   366778888899988888665331   122222 356666666664

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.72  E-value=0.00055  Score=33.67  Aligned_cols=19  Identities=21%  Similarity=0.541  Sum_probs=9.7

Q ss_pred             cCEEEccCCCCCCCchhhc
Q 037969          247 LEILSFLNSDIVRLPGELG  265 (300)
Q Consensus       247 L~~L~l~~~~l~~lp~~~~  265 (300)
                      |++|++++|+++.+|.+++
T Consensus         2 L~~Ldls~n~l~~ip~~~~   20 (22)
T PF00560_consen    2 LEYLDLSGNNLTSIPSSFS   20 (22)
T ss_dssp             ESEEEETSSEESEEGTTTT
T ss_pred             ccEEECCCCcCEeCChhhc
Confidence            4555555555555554443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.70  E-value=7.3e-05  Score=61.55  Aligned_cols=97  Identities=22%  Similarity=0.252  Sum_probs=67.8

Q ss_pred             cCCccEEEeecCCCcccCccccCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCcCC--cccccCCCCcEE
Q 037969          151 LKKCSAISLLNSSIHEVSEEFECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLP--SSIGLLANLQTL  228 (300)
Q Consensus       151 ~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp--~~i~~l~~L~~L  228 (300)
                      +.+++.|++.++.+..+.-..+++.|++|.++-|.+  ..+.+  +..++.|+.|.|..|.|..+-  .-+.++++|+.|
T Consensus        18 l~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkI--ssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L   93 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKI--SSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL   93 (388)
T ss_pred             HHHhhhhcccCCCccHHHHHHhcccceeEEeecccc--ccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence            345666777777776665555778888888888877  55554  467788888888888877753  346678888888


Q ss_pred             EccCCCCCC--c-----ccccCCCCcCEEE
Q 037969          229 CLDQSMLGD--I-----AIIGKLKNLEILS  251 (300)
Q Consensus       229 ~l~~~~l~~--p-----~~~~~l~~L~~L~  251 (300)
                      .|..|.-..  +     ..+..|+||+.|+
T Consensus        94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             hhccCCcccccchhHHHHHHHHcccchhcc
Confidence            887776332  2     4566778888776

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=96.62  E-value=0.0071  Score=44.60  Aligned_cols=116  Identities=18%  Similarity=0.328  Sum_probs=56.1

Q ss_pred             cCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCcCCc-ccccCCCCcEEEccCCCCCC--cccccCCCCcC
Q 037969          172 ECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPS-SIGLLANLQTLCLDQSMLGD--IAIIGKLKNLE  248 (300)
Q Consensus       172 ~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~~l~~--p~~~~~l~~L~  248 (300)
                      ++++|+.+.+.. ..  ..+++..|.++..|+.+.+..+ +..++. .+.....++.+.+.. .+..  ...+..+++|+
T Consensus        10 ~~~~l~~i~~~~-~~--~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~   84 (129)
T PF13306_consen   10 NCSNLESITFPN-TI--KKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLK   84 (129)
T ss_dssp             T-TT--EEEETS-T----EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTEC
T ss_pred             CCCCCCEEEECC-Ce--eEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccccc
Confidence            556777777664 34  5666666777777888888764 666543 355565788888865 3333  34556678888


Q ss_pred             EEEccCCCCCCCchh-hcCCCCCCEEeccCCCCccccchhhhcCCCCCC
Q 037969          249 ILSFLNSDIVRLPGE-LGQLTKLRLLDLTDCLQLKFIVPNVLSSFTRLE  296 (300)
Q Consensus       249 ~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~l~~lp~~~l~~L~~L~  296 (300)
                      .+.+..+ +..++.. +.+. +|+.+.+..  .+..++...+.+.++|+
T Consensus        85 ~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~--~~~~i~~~~F~~~~~l~  129 (129)
T PF13306_consen   85 NIDIPSN-ITEIGSSSFSNC-NLKEINIPS--NITKIEENAFKNCTKLK  129 (129)
T ss_dssp             EEEETTT--BEEHTTTTTT--T--EEE-TT--B-SS----GGG------
T ss_pred             ccccCcc-ccEEchhhhcCC-CceEEEECC--CccEECCccccccccCC
Confidence            8888654 5555544 4554 788887765  25566666666666653

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.54  E-value=0.001  Score=32.70  Aligned_cols=21  Identities=38%  Similarity=0.494  Sum_probs=13.1

Q ss_pred             cccEEEeeCCcCCcCCccccc
Q 037969          201 TLRVIDLTRMRLFSLPSSIGL  221 (300)
Q Consensus       201 ~L~~L~l~~~~~~~lp~~i~~  221 (300)
                      +|++|++++|.++.+|+++++
T Consensus         1 ~L~~Ldls~n~l~~ip~~~~~   21 (22)
T PF00560_consen    1 NLEYLDLSGNNLTSIPSSFSN   21 (22)
T ss_dssp             TESEEEETSSEESEEGTTTTT
T ss_pred             CccEEECCCCcCEeCChhhcC
Confidence            356667777766666665543

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=95.94  E-value=0.0053  Score=27.98  Aligned_cols=16  Identities=38%  Similarity=0.638  Sum_probs=6.1

Q ss_pred             CcCEEEccCCCCCCCc
Q 037969          246 NLEILSFLNSDIVRLP  261 (300)
Q Consensus       246 ~L~~L~l~~~~l~~lp  261 (300)
                      +|+.|++++|+++++|
T Consensus         2 ~L~~L~l~~n~L~~lP   17 (17)
T PF13504_consen    2 NLRTLDLSNNRLTSLP   17 (17)
T ss_dssp             T-SEEEETSS--SSE-
T ss_pred             ccCEEECCCCCCCCCc
Confidence            4555555555554443

...

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=95.69  E-value=0.021  Score=47.34  Aligned_cols=15  Identities=20%  Similarity=0.379  Sum_probs=6.8

Q ss_pred             CCCCcCEEEccCCCC
Q 037969          243 KLKNLEILSFLNSDI  257 (300)
Q Consensus       243 ~l~~L~~L~l~~~~l  257 (300)
                      -+.+|+.|+++.|-+
T Consensus       212 y~~~LevLDlqDNtf  226 (388)
T COG5238         212 YSHSLEVLDLQDNTF  226 (388)
T ss_pred             HhCcceeeeccccch
Confidence            334444444444433

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=95.31  E-value=0.011  Score=26.88  Aligned_cols=16  Identities=56%  Similarity=0.845  Sum_probs=6.6

Q ss_pred             cccEEEeeCCcCCcCC
Q 037969          201 TLRVIDLTRMRLFSLP  216 (300)
Q Consensus       201 ~L~~L~l~~~~~~~lp  216 (300)
                      +|++|++++|+++++|
T Consensus         2 ~L~~L~l~~n~L~~lP   17 (17)
T PF13504_consen    2 NLRTLDLSNNRLTSLP   17 (17)
T ss_dssp             T-SEEEETSS--SSE-
T ss_pred             ccCEEECCCCCCCCCc
Confidence            4555555555555443

...

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=95.26  E-value=0.054  Score=39.80  Aligned_cols=103  Identities=18%  Similarity=0.303  Sum_probs=62.1

Q ss_pred             CchhHHhcCCcccEEEeeCCcCCcCCc-ccccCCCCcEEEccCCCCCC--cccccCCCCcCEEEccCCCCCCCchh-hcC
Q 037969          191 IPDNIFKGMKTLRVIDLTRMRLFSLPS-SIGLLANLQTLCLDQSMLGD--IAIIGKLKNLEILSFLNSDIVRLPGE-LGQ  266 (300)
Q Consensus       191 l~~~~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~~l~~--p~~~~~l~~L~~L~l~~~~l~~lp~~-~~~  266 (300)
                      +++..|.+..+|+.+.+.. .++.+++ .+....+|+.+.+..+ +..  -..+..+++++.+.+.. .+..++.. +..
T Consensus         3 i~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~   79 (129)
T PF13306_consen    3 IGNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSN   79 (129)
T ss_dssp             E-TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT
T ss_pred             ECHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccc
Confidence            4556678888999999985 5777654 4677778999999875 655  35677887899999976 55555554 566


Q ss_pred             CCCCCEEeccCCCCccccchhhhcCCCCCCeee
Q 037969          267 LTKLRLLDLTDCLQLKFIVPNVLSSFTRLEELY  299 (300)
Q Consensus       267 l~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~  299 (300)
                      .++|+.+.+..+  +..++...+.+. +|+.+.
T Consensus        80 ~~~l~~i~~~~~--~~~i~~~~f~~~-~l~~i~  109 (129)
T PF13306_consen   80 CTNLKNIDIPSN--ITEIGSSSFSNC-NLKEIN  109 (129)
T ss_dssp             -TTECEEEETTT---BEEHTTTTTT--T--EEE
T ss_pred             cccccccccCcc--ccEEchhhhcCC-CceEEE
Confidence            899999999653  567776656665 776654

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=95.19  E-value=0.00034  Score=56.23  Aligned_cols=83  Identities=14%  Similarity=0.124  Sum_probs=53.6

Q ss_pred             cCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCcCCcccccCCCCcEEEccCCCCCC-cccccCCCCcCEE
Q 037969          172 ECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPSSIGLLANLQTLCLDQSMLGD-IAIIGKLKNLEIL  250 (300)
Q Consensus       172 ~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~-p~~~~~l~~L~~L  250 (300)
                      .+...+.|+++.|..  ..+-..+ +-+..|..|+++.+.+..+|+.++.+..++.+++..|..+. |.+.++.++++++
T Consensus        40 ~~kr~tvld~~s~r~--vn~~~n~-s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~  116 (326)
T KOG0473|consen   40 SFKRVTVLDLSSNRL--VNLGKNF-SILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKN  116 (326)
T ss_pred             ccceeeeehhhhhHH--Hhhccch-HHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchh
Confidence            556666677776665  4444333 55566666677776666677777766666666666666665 6667777777777


Q ss_pred             EccCCCC
Q 037969          251 SFLNSDI  257 (300)
Q Consensus       251 ~l~~~~l  257 (300)
                      ++.+|.+
T Consensus       117 e~k~~~~  123 (326)
T KOG0473|consen  117 EQKKTEF  123 (326)
T ss_pred             hhccCcc
Confidence            7666653

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=94.99  E-value=0.034  Score=46.17  Aligned_cols=109  Identities=19%  Similarity=0.249  Sum_probs=76.3

Q ss_pred             ccCCCccEEecccCccccccCch---hHHhcCCcccEEEeeCCcCCcC-Cc-------------ccccCCCCcEEEccCC
Q 037969          171 FECLQLEFLHISQNTFVEVNIPD---NIFKGMKTLRVIDLTRMRLFSL-PS-------------SIGLLANLQTLCLDQS  233 (300)
Q Consensus       171 ~~~~~L~~L~l~~~~~~~~~l~~---~~~~~l~~L~~L~l~~~~~~~l-p~-------------~i~~l~~L~~L~l~~~  233 (300)
                      .+||+|+..++++|.+ +...|+   .+.+.-..|..|.+++|.+..+ ..             .+.+-+.|++.....|
T Consensus        89 lkcp~l~~v~LSDNAf-g~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrN  167 (388)
T COG5238          89 LKCPRLQKVDLSDNAF-GSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRN  167 (388)
T ss_pred             hcCCcceeeecccccc-CcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccc
Confidence            3788899999998887 234443   2236677889999998876532 11             2234578999999999


Q ss_pred             CCCC-c-----ccccCCCCcCEEEccCCCCCC------CchhhcCCCCCCEEeccCCCC
Q 037969          234 MLGD-I-----AIIGKLKNLEILSFLNSDIVR------LPGELGQLTKLRLLDLTDCLQ  280 (300)
Q Consensus       234 ~l~~-p-----~~~~~l~~L~~L~l~~~~l~~------lp~~~~~l~~L~~L~l~~~~~  280 (300)
                      ++.. +     ..+..-.+|+++.+..|.|+.      +--++..+.+|+.|++.+|..
T Consensus       168 Rlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtf  226 (388)
T COG5238         168 RLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTF  226 (388)
T ss_pred             hhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccch
Confidence            8776 4     233344689999999998761      112356788999999999873

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=94.23  E-value=0.048  Score=27.76  Aligned_cols=19  Identities=32%  Similarity=0.452  Sum_probs=10.6

Q ss_pred             CCcCEEEccCCCCCCCchh
Q 037969          245 KNLEILSFLNSDIVRLPGE  263 (300)
Q Consensus       245 ~~L~~L~l~~~~l~~lp~~  263 (300)
                      ++|++|++.+|.++.+|..
T Consensus         2 ~~L~~L~L~~N~l~~lp~~   20 (26)
T smart00369        2 PNLRELDLSNNQLSSLPPG   20 (26)
T ss_pred             CCCCEEECCCCcCCcCCHH
Confidence            4555555555555555554

>smart00370 LRR Leucine-rich repeats, outliers

Probab=94.23  E-value=0.048  Score=27.76  Aligned_cols=19  Identities=32%  Similarity=0.452  Sum_probs=10.6

Q ss_pred             CCcCEEEccCCCCCCCchh
Q 037969          245 KNLEILSFLNSDIVRLPGE  263 (300)
Q Consensus       245 ~~L~~L~l~~~~l~~lp~~  263 (300)
                      ++|++|++.+|.++.+|..
T Consensus         2 ~~L~~L~L~~N~l~~lp~~   20 (26)
T smart00370        2 PNLRELDLSNNQLSSLPPG   20 (26)
T ss_pred             CCCCEEECCCCcCCcCCHH
Confidence            4555555555555555554

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=93.69  E-value=0.028  Score=51.34  Aligned_cols=110  Identities=25%  Similarity=0.294  Sum_probs=59.0

Q ss_pred             cCCCccEEecccCccccccCchhHHhcCCcccEEEeeCC--cCCc----CCcccccCCCCcEEEccCCC-CCC--ccccc
Q 037969          172 ECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRM--RLFS----LPSSIGLLANLQTLCLDQSM-LGD--IAIIG  242 (300)
Q Consensus       172 ~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~--~~~~----lp~~i~~l~~L~~L~l~~~~-l~~--p~~~~  242 (300)
                      .+++|+.+.+.++......--..+....+.|+.|+++++  .+..    .+.....+.+|+.|+++++. +.+  ...+.
T Consensus       186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~  265 (482)
T KOG1947|consen  186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA  265 (482)
T ss_pred             hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence            356666666665543211101223355677777777662  1111    11223344667777777766 443  33333


Q ss_pred             C-CCCcCEEEccCCC-CC--CCchhhcCCCCCCEEeccCCCCc
Q 037969          243 K-LKNLEILSFLNSD-IV--RLPGELGQLTKLRLLDLTDCLQL  281 (300)
Q Consensus       243 ~-l~~L~~L~l~~~~-l~--~lp~~~~~l~~L~~L~l~~~~~l  281 (300)
                      . +++|++|.+.+|. ++  .+-.....++.|++|+++.|..+
T Consensus       266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~  308 (482)
T KOG1947|consen  266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL  308 (482)
T ss_pred             hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence            3 6677777766663 44  33333445666777777777654

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=93.50  E-value=0.0025  Score=51.42  Aligned_cols=80  Identities=13%  Similarity=0.129  Sum_probs=40.7

Q ss_pred             CccEEEeecCCCcccCccc-cCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCcCCcccccCCCCcEEEcc
Q 037969          153 KCSAISLLNSSIHEVSEEF-ECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPSSIGLLANLQTLCLD  231 (300)
Q Consensus       153 ~l~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~  231 (300)
                      ..+.|+++.+....+...+ .++.+..|+++.|.+  ..+|..+ ++...++.+++..|..+..|.+.+.+++++++++.
T Consensus        43 r~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~--~~~~~d~-~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~k  119 (326)
T KOG0473|consen   43 RVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQI--KFLPKDA-KQQRETVNAASHKNNHSQQPKSQKKEPHPKKNEQK  119 (326)
T ss_pred             eeeeehhhhhHHHhhccchHHHHHHHHHhccHhhH--hhChhhH-HHHHHHHHHHhhccchhhCCccccccCCcchhhhc
Confidence            3444555544443222222 334444555555555  5555544 55555555555555555555555555555555555


Q ss_pred             CCCC
Q 037969          232 QSML  235 (300)
Q Consensus       232 ~~~l  235 (300)
                      ++.+
T Consensus       120 ~~~~  123 (326)
T KOG0473|consen  120 KTEF  123 (326)
T ss_pred             cCcc
Confidence            5543

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.47  E-value=0.019  Score=45.42  Aligned_cols=79  Identities=20%  Similarity=0.245  Sum_probs=56.6

Q ss_pred             cccEEEeeCCcCCcC-CcccccCCCCcEEEccCCC-CCC--cccccC-CCCcCEEEccCC-CCCCC-chhhcCCCCCCEE
Q 037969          201 TLRVIDLTRMRLFSL-PSSIGLLANLQTLCLDQSM-LGD--IAIIGK-LKNLEILSFLNS-DIVRL-PGELGQLTKLRLL  273 (300)
Q Consensus       201 ~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~~~-l~~--p~~~~~-l~~L~~L~l~~~-~l~~l-p~~~~~l~~L~~L  273 (300)
                      .++.++=+++.|... -+.+.+++.++.|.+.+|. +.+  .+-++. .++|+.|++++| +|++- -..+.++++|+.|
T Consensus       102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L  181 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL  181 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence            466777777777653 3557778888888888876 333  444444 478999999999 88832 2468889999999


Q ss_pred             eccCCC
Q 037969          274 DLTDCL  279 (300)
Q Consensus       274 ~l~~~~  279 (300)
                      ++.+-+
T Consensus       182 ~l~~l~  187 (221)
T KOG3864|consen  182 HLYDLP  187 (221)
T ss_pred             HhcCch
Confidence            887644

>smart00370 LRR Leucine-rich repeats, outliers

Probab=93.20  E-value=0.091  Score=26.69  Aligned_cols=22  Identities=36%  Similarity=0.549  Sum_probs=19.0

Q ss_pred             CCCCCEEeccCCCCccccchhhh
Q 037969          267 LTKLRLLDLTDCLQLKFIVPNVL  289 (300)
Q Consensus       267 l~~L~~L~l~~~~~l~~lp~~~l  289 (300)
                      |++|++|++++|. +..+|.+++
T Consensus         1 L~~L~~L~L~~N~-l~~lp~~~f   22 (26)
T smart00370        1 LPNLRELDLSNNQ-LSSLPPGAF   22 (26)
T ss_pred             CCCCCEEECCCCc-CCcCCHHHc
Confidence            5789999999998 999998754

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=93.20  E-value=0.091  Score=26.69  Aligned_cols=22  Identities=36%  Similarity=0.549  Sum_probs=19.0

Q ss_pred             CCCCCEEeccCCCCccccchhhh
Q 037969          267 LTKLRLLDLTDCLQLKFIVPNVL  289 (300)
Q Consensus       267 l~~L~~L~l~~~~~l~~lp~~~l  289 (300)
                      |++|++|++++|. +..+|.+++
T Consensus         1 L~~L~~L~L~~N~-l~~lp~~~f   22 (26)
T smart00369        1 LPNLRELDLSNNQ-LSSLPPGAF   22 (26)
T ss_pred             CCCCCEEECCCCc-CCcCCHHHc
Confidence            5789999999998 999998754

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.65  E-value=0.032  Score=44.12  Aligned_cols=79  Identities=23%  Similarity=0.402  Sum_probs=52.0

Q ss_pred             CccEEecccCccccccCchhHHhcCCcccEEEeeCCcCC-c-CCccc-ccCCCCcEEEccCCC-CCC--cccccCCCCcC
Q 037969          175 QLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLF-S-LPSSI-GLLANLQTLCLDQSM-LGD--IAIIGKLKNLE  248 (300)
Q Consensus       175 ~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~-~-lp~~i-~~l~~L~~L~l~~~~-l~~--p~~~~~l~~L~  248 (300)
                      .++.++-+++.+. ..--+. +.+++.++.|.+.++.-- . --+-+ +..++|+.|++++|. |++  ...+.++++|+
T Consensus       102 ~IeaVDAsds~I~-~eGle~-L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr  179 (221)
T KOG3864|consen  102 KIEAVDASDSSIM-YEGLEH-LRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLR  179 (221)
T ss_pred             eEEEEecCCchHH-HHHHHH-HhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhH
Confidence            4566666666662 222222 367788888888877422 1 01112 245789999999887 665  78899999999


Q ss_pred             EEEccCC
Q 037969          249 ILSFLNS  255 (300)
Q Consensus       249 ~L~l~~~  255 (300)
                      .|.+.+-
T Consensus       180 ~L~l~~l  186 (221)
T KOG3864|consen  180 RLHLYDL  186 (221)
T ss_pred             HHHhcCc
Confidence            9988763

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=90.90  E-value=0.15  Score=44.98  Aligned_cols=36  Identities=28%  Similarity=0.467  Sum_probs=14.9

Q ss_pred             CCCcCEEEccCCCCC--CCchhhcCCCCCCEEeccCCC
Q 037969          244 LKNLEILSFLNSDIV--RLPGELGQLTKLRLLDLTDCL  279 (300)
Q Consensus       244 l~~L~~L~l~~~~l~--~lp~~~~~l~~L~~L~l~~~~  279 (300)
                      +..|..+.+.+|...  ..-..+...++|+.+++-+|.
T Consensus       400 ~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q  437 (483)
T KOG4341|consen  400 LEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ  437 (483)
T ss_pred             ccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence            334444444444222  122233344445555554444

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=87.20  E-value=0.41  Score=24.37  Aligned_cols=18  Identities=28%  Similarity=0.458  Sum_probs=12.7

Q ss_pred             CCcCEEEccCCCCCCCch
Q 037969          245 KNLEILSFLNSDIVRLPG  262 (300)
Q Consensus       245 ~~L~~L~l~~~~l~~lp~  262 (300)
                      ++|+.|++++|+++++|.
T Consensus         2 ~~L~~L~vs~N~Lt~LPe   19 (26)
T smart00364        2 PSLKELNVSNNQLTSLPE   19 (26)
T ss_pred             cccceeecCCCccccCcc
Confidence            357777777777777775

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=85.21  E-value=0.48  Score=43.23  Aligned_cols=127  Identities=23%  Similarity=0.283  Sum_probs=75.7

Q ss_pred             cCCccEEEeecCCC-cc--c-CccccCCCccEEecccCccccccCc---hhHHhcCCcccEEEeeCCc-CCcC-Ccccc-
Q 037969          151 LKKCSAISLLNSSI-HE--V-SEEFECLQLEFLHISQNTFVEVNIP---DNIFKGMKTLRVIDLTRMR-LFSL-PSSIG-  220 (300)
Q Consensus       151 ~~~l~~L~l~~~~~-~~--~-~~~~~~~~L~~L~l~~~~~~~~~l~---~~~~~~l~~L~~L~l~~~~-~~~l-p~~i~-  220 (300)
                      .+.++.+.+..+.. ..  + +....+++|+.|++.++.......+   ......+.+|+.|+++++. ++.. -..+. 
T Consensus       187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~  266 (482)
T KOG1947|consen  187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS  266 (482)
T ss_pred             CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence            45666777766543 22  2 2233889999999986311001111   1233556889999999887 5542 12222 


Q ss_pred             cCCCCcEEEccCCC-CCC--c-ccccCCCCcCEEEccCC-CCC--CCchhhcCCCCCCEEeccC
Q 037969          221 LLANLQTLCLDQSM-LGD--I-AIIGKLKNLEILSFLNS-DIV--RLPGELGQLTKLRLLDLTD  277 (300)
Q Consensus       221 ~l~~L~~L~l~~~~-l~~--p-~~~~~l~~L~~L~l~~~-~l~--~lp~~~~~l~~L~~L~l~~  277 (300)
                      ..++|++|.+..|. ++.  . .....+++|++|++++| .++  .+.....++++|+.|.+..
T Consensus       267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~  330 (482)
T KOG1947|consen  267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLS  330 (482)
T ss_pred             hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhh
Confidence            36789999988777 554  3 44456788999999998 443  2333344455555554443

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=81.67  E-value=0.99  Score=39.98  Aligned_cols=109  Identities=19%  Similarity=0.205  Sum_probs=47.9

Q ss_pred             cCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCc-CCcC--CcccccCCCCcEEEccCCCCCC---c-ccccCC
Q 037969          172 ECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMR-LFSL--PSSIGLLANLQTLCLDQSMLGD---I-AIIGKL  244 (300)
Q Consensus       172 ~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~-~~~l--p~~i~~l~~L~~L~l~~~~l~~---p-~~~~~l  244 (300)
                      .+..|+.+...++.......-..+..+..+|++|.+.+++ ++..  -.--.+.+.|+.+++.++....   . .--.++
T Consensus       292 ~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C  371 (483)
T KOG4341|consen  292 GCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNC  371 (483)
T ss_pred             hhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCC
Confidence            3455555555554332111112222344566666666553 2221  0011234455555655554221   1 222345


Q ss_pred             CCcCEEEccCC-CCCCC-----chhhcCCCCCCEEeccCCCC
Q 037969          245 KNLEILSFLNS-DIVRL-----PGELGQLTKLRLLDLTDCLQ  280 (300)
Q Consensus       245 ~~L~~L~l~~~-~l~~l-----p~~~~~l~~L~~L~l~~~~~  280 (300)
                      +.||.|.+++| .++..     ..+-..+..|..+.+++|+.
T Consensus       372 ~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~  413 (483)
T KOG4341|consen  372 PRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPL  413 (483)
T ss_pred             chhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCC
Confidence            55666666655 22211     22223445566666666653

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	300
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-16
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	6e-16
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	6e-12
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-11
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-15
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-13
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-11
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-08
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-14
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-08
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-14
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	9e-09
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-07
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-13
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-11
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-09
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	9e-05
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-13
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	6e-08
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-07
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-13
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-11
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	9e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-06
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	8e-13
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-10
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-10
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-12
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-10
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-10
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-08
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-08
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-08
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	9e-06
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	6e-12
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-06
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-05
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-04
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-11
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-10
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-11
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-11
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	8e-10
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-08
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-08
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-05
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	7e-11
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-10
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-08
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-05
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	8e-11
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-07
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	8e-07
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	7e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-10
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-09
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-08
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	8e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-04
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-10
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-10
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-10
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-09
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	9e-05
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-10
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-09
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-08
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-10
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-10
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-10
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-10
1o6v_A	466	Internalin A; bacterial infection, extracellular r	9e-09
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-05
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-10
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	9e-07
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-10
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-10
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-08
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	8e-08
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-07
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-06
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-06
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-04
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-10
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-04
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-10
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-09
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-08
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-08
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	6e-10
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-08
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	6e-08
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	5e-05
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-04
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	6e-10
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-09
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	5e-04
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	7e-10
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-08
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	8e-10
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-09
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	9e-10
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-07
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-09
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-09
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-09
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-04
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-09
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-08
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	5e-08
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	8e-04
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-09
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-09
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-08
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	6e-08
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-07
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-09
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	5e-06
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	7e-09
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-07
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	4e-07
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	8e-09
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	8e-09
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-08
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	6e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	6e-05
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-08
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	6e-05
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-07
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-07
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-06
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-06
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-07
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	6e-07
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	9e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-05
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	8e-04
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	4e-07
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	4e-07
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	5e-07
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-05
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-05
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-05
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	1e-06
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-06
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-05
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	6e-04
2a5y_B	549	CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis	1e-06
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-06
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-06
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	9e-06
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-05
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-06
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-05
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	4e-05
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	3e-06
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	4e-04
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	5e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04
3m19_A	251	Variable lymphocyte receptor A diversity region; a	1e-05
3m19_A	251	Variable lymphocyte receptor A diversity region; a	3e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	7e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-04
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-05
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	4e-05
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	4e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	3e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	7e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-05
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	4e-05
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	5e-05
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-04
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	5e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	3e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	8e-04

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 78.1 bits (193), Expect = 1e-16
 Identities = 32/156 (20%), Positives = 69/156 (44%), Gaps = 10/156 (6%)

Query: 151 LKKCSAISLLNSSI---HEVSEEFECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDL 207
           ++ C  ++ L   +       E    + L+ L +         +P +I   ++ L+ + +
Sbjct: 157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRS--LPASIAN-LQNLKSLKI 213

Query: 208 TRMRLFSLPSSIGLLANLQTLCL-DQSMLGDI-AIIGKLKNLEILSFLN-SDIVRLPGEL 264
               L +L  +I  L  L+ L L   + L +   I G    L+ L   + S+++ LP ++
Sbjct: 214 RNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDI 273

Query: 265 GQLTKLRLLDLTDCLQLKFIVPNVLSSFTRLEELYM 300
            +LT+L  LDL  C+ L  + P++++       + +
Sbjct: 274 HRLTQLEKLDLRGCVNLSRL-PSLIAQLPANCIILV 308

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 75.8 bits (187), Expect = 6e-16
 Identities = 38/154 (24%), Positives = 66/154 (42%), Gaps = 16/154 (10%)

Query: 159 LLNSSIHEVSEEFECLQ-LEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRM-RLFSLP 216
           +  + + E+ +  +    LE L +++N      +P +I   +  LR + +     L  LP
Sbjct: 111 IDAAGLMELPDTMQQFAGLETLTLARNPLRA--LPASIAS-LNRLRELSIRACPELTELP 167

Query: 217 SSIG---------LLANLQTLCLDQSMLGDI-AIIGKLKNLEILSFLNSDIVRLPGELGQ 266
             +           L NLQ+L L+ + +  + A I  L+NL+ L   NS +  L   +  
Sbjct: 168 EPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHH 227

Query: 267 LTKLRLLDLTDCLQLKFIVPNVLSSFTRLEELYM 300
           L KL  LDL  C  L+   P +      L+ L +
Sbjct: 228 LPKLEELDLRGCTALRNY-PPIFGGRAPLKRLIL 260

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 64.2 bits (157), Expect = 6e-12
 Identities = 33/130 (25%), Positives = 51/130 (39%), Gaps = 8/130 (6%)

Query: 158 SLLNSSIHEVSEEFECLQ-LEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRM-RLFSL 215
            L  + I  +      LQ L+ L I  +      +   I   +  L  +DL     L + 
Sbjct: 189 RLEWTGIRSLPASIANLQNLKSLKIRNSPLSA--LGPAIHH-LPKLEELDLRGCTALRNY 245

Query: 216 PSSIGLLANLQTLCL-DQSMLGDI-AIIGKLKNLEILSFL-NSDIVRLPGELGQLTKLRL 272
           P   G  A L+ L L D S L  +   I +L  LE L      ++ RLP  + QL    +
Sbjct: 246 PPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCI 305

Query: 273 LDLTDCLQLK 282
           + +   LQ +
Sbjct: 306 ILVPPHLQAQ 315

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 61.5 bits (150), Expect = 4e-11
 Identities = 20/108 (18%), Positives = 38/108 (35%), Gaps = 5/108 (4%)

Query: 196 FKGMKTLRVIDLTRMRLFSLPSSIGLLA--NLQTLCLDQSMLGDI-AIIGKLKNLEILSF 252
                  ++   T   L +    +          L L    L        +L +L+ ++ 
Sbjct: 52  QANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTI 111

Query: 253 LNSDIVRLPGELGQLTKLRLLDLTDCLQLKFIVPNVLSSFTRLEELYM 300
             + ++ LP  + Q   L  L L     L+ + P  ++S  RL EL +
Sbjct: 112 DAAGLMELPDTMQQFAGLETLTLARN-PLRAL-PASIASLNRLRELSI 157

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 72.0 bits (177), Expect = 1e-14
 Identities = 24/130 (18%), Positives = 50/130 (38%), Gaps = 4/130 (3%)

Query: 175 QLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPSSIGLLANLQTLCLDQ-- 232
           QL  L +S N             G  +L+ +DL+   + ++ S+   L  L+ L      
Sbjct: 53  QLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSN 112

Query: 233 -SMLGDIAIIGKLKNLEILSFLNSDIVRLP-GELGQLTKLRLLDLTDCLQLKFIVPNVLS 290
              + + ++   L+NL  L   ++       G    L+ L +L +      +  +P++ +
Sbjct: 113 LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFT 172

Query: 291 SFTRLEELYM 300
               L  L +
Sbjct: 173 ELRNLTFLDL 182

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 53.5 bits (129), Expect = 2e-08
 Identities = 24/131 (18%), Positives = 49/131 (37%), Gaps = 9/131 (6%)

Query: 176 LEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPSSIGL---LANLQTLCLDQ 232
              L +  N     ++P  +F  +  L  + L+   L              +L+ L L  
Sbjct: 30  ATRLELESNKLQ--SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87

Query: 233 SMLGDI-AIIGKLKNLEILSFLNSDIVRLP--GELGQLTKLRLLDLTDCLQLKFIVPNVL 289
           + +  + +    L+ LE L F +S++ ++        L  L  LD++     +     + 
Sbjct: 88  NGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT-HTRVAFNGIF 146

Query: 290 SSFTRLEELYM 300
           +  + LE L M
Sbjct: 147 NGLSSLEVLKM 157

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 53.5 bits (129), Expect = 2e-08
 Identities = 26/143 (18%), Positives = 56/143 (39%), Gaps = 8/143 (5%)

Query: 164 IHEVSEEFECL-QLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPSSI-GL 221
           +  +S  F  L QLE L    +   ++    ++F  ++ L  +D++        + I   
Sbjct: 90  VITMSSNFLGLEQLEHLDFQHSNLKQM-SEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG 148

Query: 222 LANLQTLCLDQ-SMLGDIA--IIGKLKNLEILSFLNSDIVRLPGE-LGQLTKLRLLDLTD 277
           L++L+ L +   S   +    I  +L+NL  L      + +L       L+ L++L+++ 
Sbjct: 149 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 208

Query: 278 CLQLKFIVPNVLSSFTRLEELYM 300
                 +          L+ L  
Sbjct: 209 N-NFFSLDTFPYKCLNSLQVLDY 230

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 70.8 bits (174), Expect = 6e-14
 Identities = 30/158 (18%), Positives = 61/158 (38%), Gaps = 4/158 (2%)

Query: 147 DEDALKKCSAISLLNSSIHEVSEEFECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVID 206
               LK    ++  ++       E +   LEFL +S+N             G  +L+ +D
Sbjct: 320 PTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLD 379

Query: 207 LTRMRLFSLPSSIGLLANLQTLCLDQSMLGDI---AIIGKLKNLEILSFLNSDIVRL-PG 262
           L+   + ++ S+   L  L+ L    S L  +   ++   L+NL  L   ++       G
Sbjct: 380 LSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG 439

Query: 263 ELGQLTKLRLLDLTDCLQLKFIVPNVLSSFTRLEELYM 300
               L+ L +L +      +  +P++ +    L  L +
Sbjct: 440 IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDL 477

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 55.0 bits (133), Expect = 9e-09
 Identities = 31/129 (24%), Positives = 59/129 (45%), Gaps = 6/129 (4%)

Query: 176 LEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSL-PSSIGLLANLQTLCLDQSM 234
            + L +S N      +    F     L+V+DL+R  + ++   +   L++L TL L  + 
Sbjct: 30  TKNLDLSFNPLRH--LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87

Query: 235 LGDIA--IIGKLKNLEILSFLNSDIVRL-PGELGQLTKLRLLDLTDCLQLKFIVPNVLSS 291
           +  +A      L +L+ L  + +++  L    +G L  L+ L++   L   F +P   S+
Sbjct: 88  IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 147

Query: 292 FTRLEELYM 300
            T LE L +
Sbjct: 148 LTNLEHLDL 156

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 49.6 bits (119), Expect = 6e-07
 Identities = 27/128 (21%), Positives = 47/128 (36%), Gaps = 5/128 (3%)

Query: 174 LQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPSSIGLLANLQTLCLDQS 233
           L +E   ++   +   +I D +F  +  +    L  + +  +          Q L L   
Sbjct: 257 LTIEEFRLAYLDYYLDDIID-LFNCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNC 314

Query: 234 MLGDIAIIGKLKNLEILSFLNSDIVRLPGELGQLTKLRLLDLTD-CLQLKFIVPNVLSSF 292
             G      KLK+L+ L+F ++       E+  L  L  LDL+   L  K          
Sbjct: 315 KFGQF-PTLKLKSLKRLTFTSNKGGNAFSEVD-LPSLEFLDLSRNGLSFKGCCSQSDFGT 372

Query: 293 TRLEELYM 300
           T L+ L +
Sbjct: 373 TSLKYLDL 380

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 46.9 bits (112), Expect = 4e-06
 Identities = 21/136 (15%), Positives = 49/136 (36%), Gaps = 10/136 (7%)

Query: 173 CLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLT--RMRLFSLPSSIGLLANLQTLCL 230
              L+ L   +      ++ +     +KTL+ +++    ++ F LP     L NL+ L L
Sbjct: 99  LSSLQKLVAVETNLA--SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDL 156

Query: 231 DQSMLGDI--AIIGKLKNLEI----LSFLNSDIVRLPGELGQLTKLRLLDLTDCLQLKFI 284
             + +  I    +  L  + +    L    + +  +     +  +L  L L +      +
Sbjct: 157 SSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNV 216

Query: 285 VPNVLSSFTRLEELYM 300
           +   +     LE   +
Sbjct: 217 MKTCIQGLAGLEVHRL 232

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 69.7 bits (171), Expect = 2e-13
 Identities = 31/148 (20%), Positives = 58/148 (39%), Gaps = 12/148 (8%)

Query: 162 SSIHEVSEEFECL-QLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSL--PSS 218
            +    + +   L  L+ L++S N  +  ++    FK    L ++DL   RL      S 
Sbjct: 363 ETSDCCNLQLRNLSHLQSLNLSYNEPL--SLKTEAFKECPQLELLDLAFTRLKVKDAQSP 420

Query: 219 IGLLANLQTLCLDQSMLGDIA--IIGKLKNLEILS----FLNSDIVRLPGELGQLTKLRL 272
              L  L+ L L  S+L   +  +   L  L+ L+          ++    L  L +L +
Sbjct: 421 FQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEI 480

Query: 273 LDLTDCLQLKFIVPNVLSSFTRLEELYM 300
           L L+ C  L  I  +  +S   +  + +
Sbjct: 481 LVLSFC-DLSSIDQHAFTSLKMMNHVDL 507

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 61.6 bits (150), Expect = 7e-11
 Identities = 36/181 (19%), Positives = 70/181 (38%), Gaps = 14/181 (7%)

Query: 132 QHVFLVRNEVVWEWPDEDA---LKKCSAISLLNSSIHEVSEE----FECLQLEFLHISQN 184
           Q +     + +           ++     +  +    ++S         + +E +++ ++
Sbjct: 205 QSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKH 264

Query: 185 TFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPSSIGLLANLQTLCLDQSMLGDI--AIIG 242
            F   NI  N F     L+ +DLT   L  LPS +  L+ L+ L L  +   ++      
Sbjct: 265 YFF--NISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISAS 322

Query: 243 KLKNLEILSFL-NSDIVRL-PGELGQLTKLRLLDLTDC-LQLKFIVPNVLSSFTRLEELY 299
              +L  LS   N+  + L  G L  L  LR LDL+   ++        L + + L+ L 
Sbjct: 323 NFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLN 382

Query: 300 M 300
           +
Sbjct: 383 L 383

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 55.8 bits (135), Expect = 5e-09
 Identities = 25/129 (19%), Positives = 50/129 (38%), Gaps = 7/129 (5%)

Query: 175 QLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPSSI-GLLANLQTLCLDQS 233
            L FL +++       I ++ F+    L  + LT   L  +  +       L+ L   Q+
Sbjct: 58  NLTFLDLTRCQIY--WIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQT 115

Query: 234 MLGDI--AIIGKLKNLEILSFLNSDIVRLP-GELGQLTKLRLLDLTDCLQLKFIVPNVLS 290
            +  I    +   K LE L   ++ I  +   +     KL++LD  +   + ++    +S
Sbjct: 116 GISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNN-AIHYLSKEDMS 174

Query: 291 SFTRLEELY 299
           S  +   L 
Sbjct: 175 SLQQATNLS 183

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 54.3 bits (131), Expect = 2e-08
 Identities = 29/129 (22%), Positives = 47/129 (36%), Gaps = 7/129 (5%)

Query: 176 LEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPS-SIGLLANLQTLCLDQSM 234
            E L  S N      I +  F  +  L  +DLTR +++ +   +      L TL L  + 
Sbjct: 35  TECLEFSFNVLPT--IQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANP 92

Query: 235 LGDIA--IIGKLKNLEILSFLNSDIVRL-PGELGQLTKLRLLDLTDCLQLKFIVPNVLSS 291
           L  +A   +   K L+ L F+ + I  +    L     L  L L     +  I       
Sbjct: 93  LIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSN-HISSIKLPKGFP 151

Query: 292 FTRLEELYM 300
             +L+ L  
Sbjct: 152 TEKLKVLDF 160

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 42.7 bits (101), Expect = 9e-05
 Identities = 20/134 (14%), Positives = 35/134 (26%), Gaps = 8/134 (5%)

Query: 173 CLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLP-SSIGLLANLQTLCLD 231
              L+ L   Q       I        KTL  + L    + S+          L+ L   
Sbjct: 104 PKALKHLFFIQTGISS--IDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQ 161

Query: 232 QSMLGDI--AIIGKLKNLEILSFLNSD--IVRLPGELGQLTKLRLLDLTDCLQLKFIVPN 287
            + +  +    +  L+    LS   +   I  +          + L+      L  I   
Sbjct: 162 NNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKG 221

Query: 288 -VLSSFTRLEELYM 300
              S+   L     
Sbjct: 222 LKNSTIQSLWLGTF 235

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 68.1 bits (167), Expect = 3e-13
 Identities = 33/128 (25%), Positives = 55/128 (42%), Gaps = 7/128 (5%)

Query: 175 QLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPSSIGLLANLQTLCLDQSM 234
           Q+  + +  N      I +  F+GMK L  I +    + ++P   GL  +L  L LD + 
Sbjct: 146 QMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQ--GLPPSLTELHLDGNK 203

Query: 235 LGDI--AIIGKLKNLEILSFLNSDIVRLP-GELGQLTKLRLLDLTDCLQLKFIVPNVLSS 291
           +  +  A +  L NL  L    + I  +  G L     LR L L +  +L   VP  L+ 
Sbjct: 204 ITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNN-KLV-KVPGGLAD 261

Query: 292 FTRLEELY 299
              ++ +Y
Sbjct: 262 HKYIQVVY 269

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 51.9 bits (125), Expect = 6e-08
 Identities = 24/145 (16%), Positives = 46/145 (31%), Gaps = 20/145 (13%)

Query: 159 LLNSSIHEVSEE-FECL-QLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLP 216
           L  + I +V     + L  L  L +S N+     + +        LR + L   +L  +P
Sbjct: 199 LDGNKITKVDAASLKGLNNLAKLGLSFNSIS--AVDNGSLANTPHLRELHLNNNKLVKVP 256

Query: 217 SSIGLLANLQTLCLDQSMLGDIAIIGKLKNLEILSFLNSDIVRLPGELGQLTKLRLLDLT 276
             +     +Q + L               N   +S + S+    PG   +      + L 
Sbjct: 257 GGLADHKYIQVVYLHN-------------NN--ISAIGSNDFCPPGYNTKKASYSGVSLF 301

Query: 277 D-CLQLKFIVPNVLSSFTRLEELYM 300
              +Q   I P+          + +
Sbjct: 302 SNPVQYWEIQPSTFRCVYVRAAVQL 326

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 50.8 bits (122), Expect = 2e-07
 Identities = 24/132 (18%), Positives = 49/132 (37%), Gaps = 15/132 (11%)

Query: 175 QLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPSSIGLLANLQTLCLDQSM 234
            L  L +  N      I    F  +  L  + L++ +L  LP    +   LQ L + ++ 
Sbjct: 77  NLHTLILINNKIS--KISPGAFAPLVKLERLYLSKNQLKELPE--KMPKTLQELRVHENE 132

Query: 235 LGDI--AIIGKLKNLEILSF----LNSDIVRLPGELGQLTKLRLLDLTDCLQLKFIVPNV 288
           +  +  ++   L  + ++      L S  +   G    + KL  + + D   +  I   +
Sbjct: 133 ITKVRKSVFNGLNQMIVVELGTNPLKSSGIE-NGAFQGMKKLSYIRIADT-NITTIPQGL 190

Query: 289 LSSFTRLEELYM 300
                 L EL++
Sbjct: 191 ---PPSLTELHL 199

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 68.2 bits (167), Expect = 4e-13
 Identities = 28/155 (18%), Positives = 60/155 (38%), Gaps = 6/155 (3%)

Query: 151 LKKCSAISLLNSSIHEVSEEFECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRM 210
           LK    ++  ++       E +   LEFL +S+N             G  +L+ +DL+  
Sbjct: 324 LKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFN 383

Query: 211 RLFSLPSSIGLLANLQTLCLDQ---SMLGDIAIIGKLKNLEILSFLNSDIVRLP-GELGQ 266
            + ++ S+   L  L+ L         + + ++   L+NL  L   ++       G    
Sbjct: 384 GVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG 443

Query: 267 LTKLRLLDLTDCLQLK-FIVPNVLSSFTRLEELYM 300
           L+ L +L +      +   +P++ +    L  L +
Sbjct: 444 LSSLEVLKMAGN-SFQENFLPDIFTELRNLTFLDL 477

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 63.2 bits (154), Expect = 2e-11
 Identities = 29/156 (18%), Positives = 67/156 (42%), Gaps = 8/156 (5%)

Query: 151 LKKCSAISLLNSSIHEVSEEFECL-QLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTR 209
                 + L  + +  +S  F  L QLE L    +   +++   ++F  ++ L  +D++ 
Sbjct: 372 TTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMS-EFSVFLSLRNLIYLDISH 430

Query: 210 MRLFSLPSSI-GLLANLQTLCLDQSMLGDI---AIIGKLKNLEILSFLNSDIVRLPGE-L 264
                  + I   L++L+ L +  +   +     I  +L+NL  L      + +L     
Sbjct: 431 THTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAF 490

Query: 265 GQLTKLRLLDLTDCLQLKFIVPNVLSSFTRLEELYM 300
             L+ L++L++    QLK +   +    T L+++++
Sbjct: 491 NSLSSLQVLNMASN-QLKSVPDGIFDRLTSLQKIWL 525

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 56.3 bits (136), Expect = 4e-09
 Identities = 33/131 (25%), Positives = 59/131 (45%), Gaps = 8/131 (6%)

Query: 175 QLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPSSI-GLLANLQTLCLDQS 233
           +L+ L +S+       I D  ++ +  L  + LT   + SL       L++LQ L   ++
Sbjct: 53  ELQVLDLSRCEIQ--TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET 110

Query: 234 MLGDIA--IIGKLKNLEILSFLNSDI--VRLPGELGQLTKLRLLDLTDCLQLKFIVPNVL 289
            L  +    IG LK L+ L+  ++ I   +LP     LT L  LDL+   +++ I    L
Sbjct: 111 NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN-KIQSIYCTDL 169

Query: 290 SSFTRLEELYM 300
               ++  L +
Sbjct: 170 RVLHQMPLLNL 180

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 55.1 bits (133), Expect = 9e-09
 Identities = 29/130 (22%), Positives = 59/130 (45%), Gaps = 8/130 (6%)

Query: 176 LEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPS-SIGLLANLQTLCLDQSM 234
            + L +S N      +    F     L+V+DL+R  + ++   +   L++L TL L  + 
Sbjct: 30  TKNLDLSFNPLRH--LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87

Query: 235 LGDIA--IIGKLKNLEILSFLNSDIVRLP-GELGQLTKLRLLDLTDCLQLKFI-VPNVLS 290
           +  +A      L +L+ L  + +++  L    +G L  L+ L++     ++   +P   S
Sbjct: 88  IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN-LIQSFKLPEYFS 146

Query: 291 SFTRLEELYM 300
           + T LE L +
Sbjct: 147 NLTNLEHLDL 156

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 48.2 bits (115), Expect = 2e-06
 Identities = 24/153 (15%), Positives = 54/153 (35%), Gaps = 12/153 (7%)

Query: 157 ISLLNSSIHEVSEE-FECL-QLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFS 214
           + L  + I  ++   F  L  L+ L   +      ++ +     +KTL+ +++    + S
Sbjct: 81  LILTGNPIQSLALGAFSGLSSLQKLVAVETNLA--SLENFPIGHLKTLKELNVAHNLIQS 138

Query: 215 L--PSSIGLLANLQTLCLDQSMLGDIA--IIGKLKNLEI----LSFLNSDIVRLPGELGQ 266
              P     L NL+ L L  + +  I    +  L  + +    L    + +  +     +
Sbjct: 139 FKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK 198

Query: 267 LTKLRLLDLTDCLQLKFIVPNVLSSFTRLEELY 299
             +L  L L +      ++   +     LE   
Sbjct: 199 EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHR 231

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 67.6 bits (165), Expect = 8e-13
 Identities = 21/160 (13%), Positives = 53/160 (33%), Gaps = 18/160 (11%)

Query: 157 ISLLNSSIHEVSEEFECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLP 216
           I     +I    ++++ +    + +S N   +   P  +F     +  I L+   + S+P
Sbjct: 656 IGSEGRNISCSMDDYKGINASTVTLSYNEIQK--FPTELFATGSPISTIILSNNLMTSIP 713

Query: 217 S--------SIGLLANLQTLCLDQSMLGDI---AIIGKLKNLEILSFLNSDIVRLPGELG 265
                    +      L T+ L  + L  +        L  L  +    +     P +  
Sbjct: 714 ENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPL 773

Query: 266 QLTKLRLLDLTDCL-----QLKFIVPNVLSSFTRLEELYM 300
             ++L+   +         ++    P  +++   L +L +
Sbjct: 774 NSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQI 813

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 61.4 bits (149), Expect = 1e-10
 Identities = 23/148 (15%), Positives = 46/148 (31%), Gaps = 9/148 (6%)

Query: 158 SLLNSSIHEVSEEFECLQ-LEFLHISQNTFVEVN----IPDNIFKGMKTLRVIDLTRMRL 212
                 +H      +  Q L    + Q+          I  +    +K  ++ +LT  R+
Sbjct: 379 RKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTN-RI 437

Query: 213 FSLPSSIGLLANLQTLCLDQSMLGDIAIIGKLKNLEILSFLNSDIVRLPGELGQLTKLRL 272
             +  +I  L  LQ +    S          +   +  S               L  L  
Sbjct: 438 TFISKAIQRLTKLQIIYFANSPFT--YDNIAVDWEDANSDYAKQYENEELSWSNLKDLTD 495

Query: 273 LDLTDCLQLKFIVPNVLSSFTRLEELYM 300
           ++L +C  +  + P+ L     L+ L +
Sbjct: 496 VELYNCPNMTQL-PDFLYDLPELQSLNI 522

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 60.3 bits (146), Expect = 3e-10
 Identities = 22/153 (14%), Positives = 53/153 (34%), Gaps = 15/153 (9%)

Query: 161 NSSIHEVSEEFECL-QLEFLHISQNTFVEV--------NIPDNIFKGMKTLRVIDLTRMR 211
             ++ ++ +    L +L+ L+I+ N  +           + D+       +++  +    
Sbjct: 501 CPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDED-TGPKIQIFYMGYNN 559

Query: 212 LFSLPSSIGL--LANLQTLCLDQSMLGDIAIIGKLKNLEILSFLNSDIVRLPGELGQ-LT 268
           L   P+S  L  +  L  L    + +  +   G    L  L    + I  +P +      
Sbjct: 560 LEEFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTD 619

Query: 269 KLRLLDLTDCLQLKFIVPNV-LSSFTRLEELYM 300
           ++  L  +   +LK+I       S   +  +  
Sbjct: 620 QVEGLGFSHN-KLKYIPNIFNAKSVYVMGSVDF 651

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 53.0 bits (127), Expect = 5e-08
 Identities = 24/200 (12%), Positives = 57/200 (28%), Gaps = 48/200 (24%)

Query: 146 PDEDALKKCSAISLLNSS---IHEVSEEFECLQLEFLHISQNTFVEVNIPDNIFKGMK-- 200
           P   +L+K   + LL+     +  +      ++L  L +  N   E  IP++        
Sbjct: 564 PASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIEE--IPEDFCAFTDQV 621

Query: 201 -----------------------TLRVIDLTRMRLFSLPSSIGL------LANLQTLCLD 231
                                   +  +D +  ++ S   +I          N  T+ L 
Sbjct: 622 EGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLS 681

Query: 232 QSMLGDI--AIIGKLKNLEIL--------SFLNSDIVRLPGELGQLTKLRLLDLTDCLQL 281
            + +      +      +  +        S   + +    G       L  +DL    +L
Sbjct: 682 YNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFN-KL 740

Query: 282 KFIVPNV-LSSFTRLEELYM 300
             +  +   ++   L  + +
Sbjct: 741 TSLSDDFRATTLPYLSNMDV 760

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 49.1 bits (117), Expect = 1e-06
 Identities = 19/166 (11%), Positives = 47/166 (28%), Gaps = 26/166 (15%)

Query: 161 NSSIHEVSEEFECL-QLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPSSI 219
             +   V +    L +L+ L    ++           +    +      R+R+      +
Sbjct: 333 FGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFL 392

Query: 220 GLLANLQTLCLDQSMLGDIAIIGKLKNLEILSF-------LNSDIVRLPGELGQLTKLRL 272
                L    L Q  +     +  +K    +S        L + I  +   + +LTKL++
Sbjct: 393 DYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQI 452

Query: 273 LDLTDC------------------LQLKFIVPNVLSSFTRLEELYM 300
           +   +                    +         S+   L ++ +
Sbjct: 453 IYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVEL 498

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 64.9 bits (159), Expect = 4e-12
 Identities = 32/149 (21%), Positives = 60/149 (40%), Gaps = 8/149 (5%)

Query: 151 LKKCSAISLLNSSIHEVSEEFECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRM 210
           L +     L  +S+ +V  + E   +  L ++       +I     + +  L  ++L   
Sbjct: 21  LAEGIRAVLQKASVTDVVTQEELESITKLVVAGEKV--ASIQG--IEYLTNLEYLNLNGN 76

Query: 211 RLFSLPSSIGLLANLQTLCLDQSMLGDIAIIGKLKNLEILSFLNSDIVRLPGELGQLTKL 270
           ++  +   +  L  L  L +  + + DI+ +  L NL  L     +I  +   L  LTK+
Sbjct: 77  QITDIS-PLSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNEDNISDIS-PLANLTKM 134

Query: 271 RLLDLTDCLQLKFIVPNVLSSFTRLEELY 299
             L+L     L  + P  LS+ T L  L 
Sbjct: 135 YSLNLGANHNLSDLSP--LSNMTGLNYLT 161

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 59.1 bits (144), Expect = 3e-10
 Identities = 26/155 (16%), Positives = 69/155 (44%), Gaps = 8/155 (5%)

Query: 146 PDEDALKKCSAISLLNSSIHEVSEEFECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVI 205
             ++ L+  + + +    +  +        LE+L+++ N   +++        +  L  +
Sbjct: 38  VTQEELESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISP----LSNLVKLTNL 93

Query: 206 DLTRMRLFSLPSSIGLLANLQTLCLDQSMLGDIAIIGKLKNLEILSFLNSDIVRLPGELG 265
            +   ++ +  S++  L NL+ L L++  + DI+ +  L  +  L+   +  +     L 
Sbjct: 94  YIGTNKI-TDISALQNLTNLRELYLNEDNISDISPLANLTKMYSLNLGANHNLSDLSPLS 152

Query: 266 QLTKLRLLDLTDCLQLKFIVPNVLSSFTRLEELYM 300
            +T L  L +T+  ++K + P  +++ T L  L +
Sbjct: 153 NMTGLNYLTVTES-KVKDVTP--IANLTDLYSLSL 184

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 59.1 bits (144), Expect = 3e-10
 Identities = 31/150 (20%), Positives = 61/150 (40%), Gaps = 8/150 (5%)

Query: 151 LKKCSAISLLNSSIHEVSEEFECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRM 210
           L K + + +  + I ++S       L  L+++++     +I       +  +  ++L   
Sbjct: 87  LVKLTNLYIGTNKITDISALQNLTNLRELYLNEDNIS--DISP--LANLTKMYSLNLGAN 142

Query: 211 RLFSLPSSIGLLANLQTLCLDQSMLGDIAIIGKLKNLEILSFLNSDIVRLPGELGQLTKL 270
              S  S +  +  L  L + +S + D+  I  L +L  LS   + I  +   L  LT L
Sbjct: 143 HNLSDLSPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDIS-PLASLTSL 201

Query: 271 RLLDLTDCLQLKFIVPNVLSSFTRLEELYM 300
                    Q+  I P  +++ TRL  L +
Sbjct: 202 HYFTAYVN-QITDITP--VANMTRLNSLKI 228

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 54.1 bits (131), Expect = 1e-08
 Identities = 25/144 (17%), Positives = 60/144 (41%), Gaps = 9/144 (6%)

Query: 158 SLLNSSIHEVSEEFECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPS 217
           +   + I +++      +L  L I  N   +++        +  L  +++   ++  + +
Sbjct: 205 TAYVNQITDITPVANMTRLNSLKIGNNKITDLSP----LANLSQLTWLEIGTNQISDINA 260

Query: 218 SIGLLANLQTLCLDQSMLGDIAIIGKLKNLEILSFLNSDIVRL-PGELGQLTKLRLLDLT 276
            +  L  L+ L +  + + DI+++  L  L  L   N+ +       +G LT L  L L+
Sbjct: 261 -VKDLTKLKMLNVGSNQISDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLS 319

Query: 277 DCLQLKFIVPNVLSSFTRLEELYM 300
               +  I P  L+S ++++    
Sbjct: 320 QN-HITDIRP--LASLSKMDSADF 340

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 54.1 bits (131), Expect = 1e-08
 Identities = 23/104 (22%), Positives = 40/104 (38%), Gaps = 5/104 (4%)

Query: 197 KGMKTLRVIDLTRMRLFSLPSSIGLLANLQTLCLDQSMLGDIAIIGKLKNLEILSFLNSD 256
             +       L +  +  + +    L ++  L +    +  I  I  L NLE L+   + 
Sbjct: 19  ADLAEGIRAVLQKASVTDVVT-QEELESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQ 77

Query: 257 IVRLPGELGQLTKLRLLDLTDCLQLKFIVPNVLSSFTRLEELYM 300
           I  +   L  L KL  L +    ++  I    L + T L ELY+
Sbjct: 78  ITDIS-PLSNLVKLTNLYIGTN-KITDISA--LQNLTNLRELYL 117

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 52.9 bits (128), Expect = 3e-08
 Identities = 25/140 (17%), Positives = 57/140 (40%), Gaps = 9/140 (6%)

Query: 161 NSSIHEVSEEFECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPSSIG 220
           N ++ ++S       L +L ++++     ++       +  L  + L   ++  + S + 
Sbjct: 142 NHNLSDLSPLSNMTGLNYLTVTESKVK--DVTP--IANLTDLYSLSLNYNQIEDI-SPLA 196

Query: 221 LLANLQTLCLDQSMLGDIAIIGKLKNLEILSFLNSDIVRLPGELGQLTKLRLLDLTDCLQ 280
            L +L       + + DI  +  +  L  L   N+ I  L   L  L++L  L++    Q
Sbjct: 197 SLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTN-Q 254

Query: 281 LKFIVPNVLSSFTRLEELYM 300
           +  I    +   T+L+ L +
Sbjct: 255 ISDINA--VKDLTKLKMLNV 272

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 45.6 bits (109), Expect = 9e-06
 Identities = 29/129 (22%), Positives = 62/129 (48%), Gaps = 8/129 (6%)

Query: 151 LKKCSAISLLNSSIHEVSEEFECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRM 210
           + + +++ + N+ I ++S      QL +L I  N   ++N      K +  L+++++   
Sbjct: 220 MTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDINA----VKDLTKLKMLNVGSN 275

Query: 211 RLFSLPSSIGLLANLQTLCLDQSMLGDIAI--IGKLKNLEILSFLNSDIVRLPGELGQLT 268
           ++  + S +  L+ L +L L+ + LG+  +  IG L NL  L    + I  +   L  L+
Sbjct: 276 QISDI-SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIR-PLASLS 333

Query: 269 KLRLLDLTD 277
           K+   D  +
Sbjct: 334 KMDSADFAN 342

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 63.9 bits (156), Expect = 6e-12
 Identities = 34/130 (26%), Positives = 49/130 (37%), Gaps = 6/130 (4%)

Query: 175 QLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPSSI-GLLANLQTLCLDQS 233
            LE L +S N  +   +    F G+  L  + L R  L  L   +   LA LQ L L  +
Sbjct: 81  LLEQLDLSDNAQLRS-VDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDN 139

Query: 234 MLGDIA--IIGKLKNLEILSFLNSDIVRLP-GELGQLTKLRLLDLTDCLQLKFIVPNVLS 290
            L  +       L NL  L    + I  +P      L  L  L L    ++  + P+   
Sbjct: 140 ALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQN-RVAHVHPHAFR 198

Query: 291 SFTRLEELYM 300
              RL  LY+
Sbjct: 199 DLGRLMTLYL 208

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 46.5 bits (111), Expect = 4e-06
 Identities = 25/130 (19%), Positives = 47/130 (36%), Gaps = 8/130 (6%)

Query: 176 LEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPSSI-GLLANLQTLCLDQ-S 233
            + + +  N     ++P   F+  + L ++ L    L  + ++    LA L+ L L   +
Sbjct: 34  SQRIFLHGNRIS--HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 234 MLGDIA--IIGKLKNLEILSFLNSDIVRLP-GELGQLTKLRLLDLTDCLQLKFIVPNVLS 290
            L  +       L  L  L      +  L  G    L  L+ L L D   L+ +  +   
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDN-ALQALPDDTFR 150

Query: 291 SFTRLEELYM 300
               L  L++
Sbjct: 151 DLGNLTHLFL 160

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 44.2 bits (105), Expect = 2e-05
 Identities = 24/104 (23%), Positives = 43/104 (41%), Gaps = 5/104 (4%)

Query: 200 KTLRVIDLTRMRLFSLPSSIGLLANLQTLCLDQSMLGDI--AIIGKLKNLEILSFLNSDI 257
           +        +  L ++P   G+ A  Q + L  + +  +  A     +NL IL   ++ +
Sbjct: 11  EPKVTTSCPQQGLQAVPV--GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVL 68

Query: 258 VRL-PGELGQLTKLRLLDLTDCLQLKFIVPNVLSSFTRLEELYM 300
            R+       L  L  LDL+D  QL+ + P       RL  L++
Sbjct: 69  ARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHL 112

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 41.9 bits (99), Expect = 1e-04
 Identities = 24/123 (19%), Positives = 47/123 (38%), Gaps = 26/123 (21%)

Query: 158 SLLNSSIHEVSEE-FECL-QLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSL 215
            L ++++  + ++ F  L  L  L +  N     ++P+  F+G+ +L  + L + R+  +
Sbjct: 135 YLQDNALQALPDDTFRDLGNLTHLFLHGNRIS--SVPERAFRGLHSLDRLLLHQNRVAHV 192

Query: 216 PSSIGLLANLQTLCLDQSMLGDIAIIGKLKNLEILSFLNSDIVRLPGE-LGQLTKLRLLD 274
                   +L                     L  L    +++  LP E L  L  L+ L 
Sbjct: 193 HP--HAFRDLG-------------------RLMTLYLFANNLSALPTEALAPLRALQYLR 231

Query: 275 LTD 277
           L D
Sbjct: 232 LND 234

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 63.5 bits (155), Expect = 1e-11
 Identities = 17/127 (13%), Positives = 43/127 (33%), Gaps = 6/127 (4%)

Query: 176 LEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLP--SSIGLLANLQTLCLDQS 233
            + ++++ N      + D        ++ +DL    + ++           L+ L L  +
Sbjct: 122 KKNIYLANNKITM--LRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179

Query: 234 MLGDIAIIGKLKNLEILSFLNSDIVRLPGELGQLTKLRLLDLTDCLQLKFIVPNVLSSFT 293
            + D+        L+ L   ++ +  +  E      +  + L +  +L  I    L    
Sbjct: 180 FIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNN-KLVLI-EKALRFSQ 237

Query: 294 RLEELYM 300
            LE   +
Sbjct: 238 NLEHFDL 244

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 58.5 bits (142), Expect = 5e-10
 Identities = 20/104 (19%), Positives = 42/104 (40%), Gaps = 3/104 (2%)

Query: 175 QLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPSSIGLLANLQTLCLDQSM 234
           ++++L +  N    VN  + +     TL  ++L    ++ +   + + A L+TL L  + 
Sbjct: 145 RVQYLDLKLNEIDTVNFAE-LAASSDTLEHLNLQYNFIYDVKGQV-VFAKLKTLDLSSNK 202

Query: 235 LGDI-AIIGKLKNLEILSFLNSDIVRLPGELGQLTKLRLLDLTD 277
           L  +         +  +S  N+ +V +   L     L   DL  
Sbjct: 203 LAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRG 246

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 56.2 bits (136), Expect = 3e-09
 Identities = 19/156 (12%), Positives = 55/156 (35%), Gaps = 25/156 (16%)

Query: 163 SIHEVSEEFECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLP-SSIGL 221
           +IHE+ +     + +   ++ ++  +     ++ +    ++ +DL+   L  +  + +  
Sbjct: 1   AIHEIKQNGN--RYKIEKVTDSSLKQ--ALASLRQSAWNVKELDLSGNPLSQISAADLAP 56

Query: 222 LANLQTLCLDQSMLGDIAIIGKLKNLEILSFLNSDIVRLPGELGQLTKLRL--------- 272
              L+ L L  ++L +   +  L  L  L   N+ +  L      +  L           
Sbjct: 57  FTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELL-VGPSIETLHAANNNISRVS 115

Query: 273 ---------LDLTDCLQLKFIVPNVLSSFTRLEELY 299
                    + L +  ++  +        +R++ L 
Sbjct: 116 CSRGQGKKNIYLANN-KITMLRDLDEGCRSRVQYLD 150

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 64.3 bits (157), Expect = 1e-11
 Identities = 23/162 (14%), Positives = 52/162 (32%), Gaps = 15/162 (9%)

Query: 151 LKKCSAISLLNSSIHEVSEEFECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRM 210
             +            E  +      L  + +     +   +P  +   +  +++I++   
Sbjct: 226 AWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTK-LPTFLKA-LPEMQLINVACN 283

Query: 211 RLFSLP---------SSIGLLANLQTLCLDQSMLGDIAI---IGKLKNLEILSFLNSDIV 258
           R  S           +   +   +Q + +  + L    +   + K+K L +L  L + + 
Sbjct: 284 RGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLE 343

Query: 259 RLPGELGQLTKLRLLDLTDCLQLKFIVPNVLSSFTRLEELYM 300
                 G   KL  L+L    Q+  I  N      ++E L  
Sbjct: 344 GKLPAFGSEIKLASLNLAYN-QITEIPANFCGFTEQVENLSF 384

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 62.0 bits (151), Expect = 6e-11
 Identities = 20/157 (12%), Positives = 59/157 (37%), Gaps = 13/157 (8%)

Query: 155 SAISLLNSSIHEVSEEFECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFS 214
            +   L      +++     +++ ++I  N      +  ++ K MK L +++    +L  
Sbjct: 286 ISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQK-MKKLGMLECLYNQLEG 344

Query: 215 LPSSIGLLANLQTLCLDQSMLGDI--AIIGKLKNLEILSFLNSDIVRLP--GELGQLTKL 270
              + G    L +L L  + + +I     G  + +E LSF ++ +  +P   +   ++ +
Sbjct: 345 KLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVM 404

Query: 271 RLLDLTDCLQLKFIVPNVLSSF-------TRLEELYM 300
             +D +   ++  +                 +  + +
Sbjct: 405 SAIDFSYN-EIGSVDGKNFDPLDPTPFKGINVSSINL 440

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 58.5 bits (142), Expect = 8e-10
 Identities = 20/179 (11%), Positives = 54/179 (30%), Gaps = 32/179 (17%)

Query: 151 LKKCSAISLLNSSIHEVSEEFECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRM 210
            K+   +    + +     E +   L    I+ +   + +I  +          I     
Sbjct: 137 QKQKMRMHYQKTFVDYDPRE-DFSDLIKDCINSDPQ-QKSIKKSSRI-TLKDTQIGQLSN 193

Query: 211 RLFSLPSSIGLLANLQTLCLDQSMLGDIAI---------------------IGKLKNLEI 249
            +  +  ++  L  L+   +  S      I                        LK+L  
Sbjct: 194 NITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTD 253

Query: 250 LSFL-NSDIVRLPGELGQLTKLRLLDLTDC-------LQLKFIVPNVLSSFTRLEELYM 300
           +      ++ +LP  L  L +++L+++          L+  +          +++ +Y+
Sbjct: 254 VEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYI 312

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 53.9 bits (130), Expect = 3e-08
 Identities = 22/153 (14%), Positives = 54/153 (35%), Gaps = 15/153 (9%)

Query: 158 SLLNSSIHEVSEEFECLQ-LEFLHISQNTFVEVNIPDNIFKG-MKTLRVIDLTRMRLFSL 215
            +  +S+ + +E F+    L  + +  N   +  + D+     +  L  IDL+       
Sbjct: 471 EIPKNSLKDENENFKNTYLLTSIDLRFNKLTK--LSDDFRATTLPYLVGIDLSYNSFSKF 528

Query: 216 PSSIGLLANLQTLCLDQ-------SMLGDI-AIIGKLKNLEILSFLNSDIVRLPGELGQL 267
           P+     + L+   +           L +    I    +L  L   ++DI ++  ++   
Sbjct: 529 PTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKI--T 586

Query: 268 TKLRLLDLTDCLQLKFIVPNVLSSFTRLEELYM 300
             + +LD+ D      I  + +  +       +
Sbjct: 587 PNISVLDIKDN-PNISIDLSYVCPYIEAGMYML 618

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 53.1 bits (128), Expect = 4e-08
 Identities = 17/146 (11%), Positives = 40/146 (27%), Gaps = 23/146 (15%)

Query: 175 QLEFLHISQNTFVEVNIPDNIFKG-MKTLRVIDL--------TRMRLFSLPSSIGLLANL 225
           Q+E L  + N      IP+      +  +  ID                L  +     N+
Sbjct: 378 QVENLSFAHNKLKY--IPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINV 435

Query: 226 QTLCLDQSMLGDI--AIIGKLKNLEIL--------SFLNSDIVRLPGELGQLTKLRLLDL 275
            ++ L  + +      +      L  +            + +            L  +DL
Sbjct: 436 SSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDL 495

Query: 276 TDCLQLKFIVPNV-LSSFTRLEELYM 300
               +L  +  +   ++   L  + +
Sbjct: 496 RFN-KLTKLSDDFRATTLPYLVGIDL 520

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 45.8 bits (109), Expect = 1e-05
 Identities = 20/164 (12%), Positives = 44/164 (26%), Gaps = 32/164 (19%)

Query: 166 EVSEEFECL-QLEFLHISQNTF---VEVNIPDNIFKGMKTLRVIDLTRMRLFSLPSSIGL 221
            V +    L +LE L +  +       +  P  I     +       RM      + +  
Sbjct: 96  RVPDAIGQLTELEVLALGSHGEKVNERLFGPKGI-SANMSDEQKQKMRMHY--QKTFVDY 152

Query: 222 LANLQTLCLDQSMLGDIAIIGKLK-------NLEILSFLNSDIVRLPGELGQLTKLRLLD 274
                   L +  +        +K           +  L+++I  +   + +LTKLR   
Sbjct: 153 DPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFY 212

Query: 275 LTDC------------------LQLKFIVPNVLSSFTRLEELYM 300
           + +                    Q          +   L ++ +
Sbjct: 213 MGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEV 256

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 61.7 bits (149), Expect = 7e-11
 Identities = 31/143 (21%), Positives = 58/143 (40%), Gaps = 11/143 (7%)

Query: 159 LLNSSIHEVSEEFECLQLEFLHISQNTFVEVNIPDNI-FKGMKTLRVIDLTRMRLFSLPS 217
            +++ I ++  +    +    ++ +      ++ D +    + ++  I      + S+  
Sbjct: 6   TVSTPIKQIFPDDAFAETIKDNLKKK-----SVTDAVTQNELNSIDQIIANNSDIKSV-Q 59

Query: 218 SIGLLANLQTLCLDQSMLGDIAIIGKLKNLEILSFLNSDIVRLPGELGQLTKLRLLDLTD 277
            I  L N+  L L+ + L DI  +  LKNL  L    + I  L   L  L KL+ L L  
Sbjct: 60  GIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLSS-LKDLKKLKSLSLEH 118

Query: 278 CLQLKFIVPNVLSSFTRLEELYM 300
              +  I    L    +LE LY+
Sbjct: 119 N-GISDING--LVHLPQLESLYL 138

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 60.5 bits (146), Expect = 2e-10
 Identities = 33/153 (21%), Positives = 68/153 (44%), Gaps = 11/153 (7%)

Query: 149 DALKKCSAISLLNSSIHEVSEEFECLQLEFLHISQNTFVEVNIPD-NIFKGMKTLRVIDL 207
           DA  +    +L   S+ +   + E   ++ +  + +     +I      + +  +  + L
Sbjct: 18  DAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNS-----DIKSVQGIQYLPNVTKLFL 72

Query: 208 TRMRLFSLPSSIGLLANLQTLCLDQSMLGDIAIIGKLKNLEILSFLNSDIVRLPGELGQL 267
              +L  +   +  L NL  L LD++ + D++ +  LK L+ LS  ++ I  + G L  L
Sbjct: 73  NGNKLTDI-KPLTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNGISDING-LVHL 130

Query: 268 TKLRLLDLTDCLQLKFIVPNVLSSFTRLEELYM 300
            +L  L L +  ++  I    LS  T+L+ L +
Sbjct: 131 PQLESLYLGNN-KITDITV--LSRLTKLDTLSL 160

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 53.2 bits (127), Expect = 4e-08
 Identities = 32/153 (20%), Positives = 67/153 (43%), Gaps = 11/153 (7%)

Query: 149 DALKKCSAISLLNSSIHEVSEEFECLQLEFLHISQNTFVEVNIPD-NIFKGMKTLRVIDL 207
             L   + + L  + + ++        L +L + +N      I D +  K +K L+ + L
Sbjct: 62  QYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDEN-----KIKDLSSLKDLKKLKSLSL 116

Query: 208 TRMRLFSLPSSIGLLANLQTLCLDQSMLGDIAIIGKLKNLEILSFLNSDIVRLPGELGQL 267
               +  + + +  L  L++L L  + + DI ++ +L  L+ LS  ++ I  +   L  L
Sbjct: 117 EHNGISDI-NGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP-LAGL 174

Query: 268 TKLRLLDLTDCLQLKFIVPNVLSSFTRLEELYM 300
           TKL+ L L+    +  +    L+    L+ L +
Sbjct: 175 TKLQNLYLSKN-HISDLRA--LAGLKNLDVLEL 204

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 44.3 bits (104), Expect = 3e-05
 Identities = 32/150 (21%), Positives = 64/150 (42%), Gaps = 11/150 (7%)

Query: 151 LKKCSAISLLNSSIHEVSEEFECLQLEFLHISQNTFVEVNIPD-NIFKGMKTLRVIDLTR 209
           LKK  ++SL ++ I +++      QLE L++  N      I D  +   +  L  + L  
Sbjct: 108 LKKLKSLSLEHNGISDINGLVHLPQLESLYLGNN-----KITDITVLSRLTKLDTLSLED 162

Query: 210 MRLFSLPSSIGLLANLQTLCLDQSMLGDIAIIGKLKNLEILSFLNSDIV-RLPGELGQLT 268
            ++  +   +  L  LQ L L ++ + D+  +  LKNL++L   + + + +       L 
Sbjct: 163 NQISDI-VPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQECLNKPINHQSNLV 221

Query: 269 KLRLLDLTDCLQLKFIVPNVLSSFTRLEEL 298
               +  TD      + P ++S     E+ 
Sbjct: 222 VPNTVKNTD---GSLVTPEIISDDGDYEKP 248

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 60.8 bits (148), Expect = 8e-11
 Identities = 32/157 (20%), Positives = 60/157 (38%), Gaps = 10/157 (6%)

Query: 148 EDALKKCSAISLLNSSIHEVSEE-FECL-QLEFLHISQNTFVEVNIPDNIFKGMKTLRVI 205
            +       + + ++ I +V +  F  L  +  + +  N           F G+K L  +
Sbjct: 119 PNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLK-LNYL 177

Query: 206 DLTRMRLFSLPSSIGLLANLQTLCLDQSMLGDI--AIIGKLKNLEILSFLNSDIVRLP-G 262
            ++  +L  +P    L   L  L LD + +  I    + +   L  L   ++ I  +  G
Sbjct: 178 RISEAKLTGIPK--DLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENG 235

Query: 263 ELGQLTKLRLLDLTDCLQLKFIVPNVLSSFTRLEELY 299
            L  L  LR L L +  +L  + P  L     L+ +Y
Sbjct: 236 SLSFLPTLRELHLDNN-KLSRV-PAGLPDLKLLQVVY 270

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 50.8 bits (122), Expect = 1e-07
 Identities = 30/128 (23%), Positives = 52/128 (40%), Gaps = 7/128 (5%)

Query: 176 LEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPSSIGLLA--NLQTLCLDQS 233
           L  L I  N   +  +P  +F G++ +  I++    L +     G      L  L + ++
Sbjct: 125 LVELRIHDNRIRK--VPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEA 182

Query: 234 MLGDIAIIGKLKNLEILSFLNSDIVRLPGE-LGQLTKLRLLDLTDCLQLKFIVPNVLSSF 292
            L  I      + L  L   ++ I  +  E L + +KL  L L    Q++ I    LS  
Sbjct: 183 KLTGIP-KDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHN-QIRMIENGSLSFL 240

Query: 293 TRLEELYM 300
             L EL++
Sbjct: 241 PTLRELHL 248

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 48.9 bits (117), Expect = 8e-07
 Identities = 29/150 (19%), Positives = 66/150 (44%), Gaps = 14/150 (9%)

Query: 157 ISLLNSSIHEVSEE-FECL-QLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFS 214
           + L N+ I E+ ++ F+ L  L  L +  N      I +  F  ++ L+ + +++  L  
Sbjct: 59  LDLQNNDISELRKDDFKGLQHLYALVLVNNKIS--KIHEKAFSPLRKLQKLYISKNHLVE 116

Query: 215 LPSSIGLLANLQTLCLDQSMLGDIA--IIGKLKNLEILSFLNSDIVRLPGELGQLTKLRL 272
           +P    L ++L  L +  + +  +   +   L+N+  +    + +     E G    L+L
Sbjct: 117 IPP--NLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKL 174

Query: 273 --LDLTDCLQLKFIVPNVLSSFTRLEELYM 300
             L +++  +L  I  ++      L EL++
Sbjct: 175 NYLRISEA-KLTGIPKDL---PETLNELHL 200

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 45.8 bits (109), Expect = 7e-06
 Identities = 22/145 (15%), Positives = 45/145 (31%), Gaps = 20/145 (13%)

Query: 159 LLNSSIHEVSEE-FECL-QLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLP 216
           L ++ I  +  E      +L  L +  N      I +     + TLR + L   +L  +P
Sbjct: 200 LDHNKIQAIELEDLLRYSKLYRLGLGHNQIR--MIENGSLSFLPTLRELHLDNNKLSRVP 257

Query: 217 SSIGLLANLQTLCLDQSMLGDIAIIGKLKNLEILSFLNSDIVRLPGELGQLTKLRLLDLT 276
           + +  L  LQ + L  +          +  + +  F         G   +      + L 
Sbjct: 258 AGLPDLKLLQVVYLHTN---------NITKVGVNDFCP------VGFGVKRAYYNGISLF 302

Query: 277 D-CLQLKFIVPNVLSSFTRLEELYM 300
           +  +    + P      T    +  
Sbjct: 303 NNPVPYWEVQPATFRCVTDRLAIQF 327

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 60.8 bits (148), Expect = 1e-10
 Identities = 30/148 (20%), Positives = 54/148 (36%), Gaps = 4/148 (2%)

Query: 157 ISLLNSSIHEVSEEFECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLP 216
           ++L  +      ++     L +L +S+N             G  +LR +DL+      + 
Sbjct: 333 LTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMS 392

Query: 217 SSIGLLANLQTLCLDQSMLGDIAIIGKLKNLEILSFL----NSDIVRLPGELGQLTKLRL 272
           ++   L  LQ L    S L  +       +LE L +L     +  +   G    LT L  
Sbjct: 393 ANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNT 452

Query: 273 LDLTDCLQLKFIVPNVLSSFTRLEELYM 300
           L +         + NV ++ T L  L +
Sbjct: 453 LKMAGNSFKDNTLSNVFANTTNLTFLDL 480

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 57.0 bits (138), Expect = 2e-09
 Identities = 25/129 (19%), Positives = 52/129 (40%), Gaps = 6/129 (4%)

Query: 176 LEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSL-PSSIGLLANLQTLCLDQSM 234
            + + +S N      +    F     L+ +DL+R  + ++   +   L +L  L L  + 
Sbjct: 34  TKNIDLSFNPLKI--LKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP 91

Query: 235 LGDIA--IIGKLKNLEILSFLNSDIVRLP-GELGQLTKLRLLDLTDCLQLKFIVPNVLSS 291
           +   +      L +LE L  + + +  L    +GQL  L+ L++         +P   S+
Sbjct: 92  IQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSN 151

Query: 292 FTRLEELYM 300
            T L  + +
Sbjct: 152 LTNLVHVDL 160

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 54.3 bits (131), Expect = 2e-08
 Identities = 33/133 (24%), Positives = 60/133 (45%), Gaps = 12/133 (9%)

Query: 175 QLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSL-PSSIGLLANLQTLCLDQS 233
           +L++L +S+       I D  + G+  L  + LT   + S  P S   L +L+ L   ++
Sbjct: 57  ELQWLDLSRCEIE--TIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVET 114

Query: 234 MLGDI--AIIGKLKNLEILS----FLNSDIVRLPGELGQLTKLRLLDLTDCLQLKFIVPN 287
            L  +    IG+L  L+ L+    F++S   +LP     LT L  +DL+    ++ I  N
Sbjct: 115 KLASLESFPIGQLITLKKLNVAHNFIHS--CKLPAYFSNLTNLVHVDLSYN-YIQTITVN 171

Query: 288 VLSSFTRLEELYM 300
            L       ++ +
Sbjct: 172 DLQFLRENPQVNL 184

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 50.8 bits (122), Expect = 2e-07
 Identities = 27/152 (17%), Positives = 48/152 (31%), Gaps = 12/152 (7%)

Query: 157 ISLLNSSIHEVSEE-FECL-QLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLT--RMRL 212
           + L  + I   S   F  L  LE L   +       +       + TL+ +++    +  
Sbjct: 85  LILTGNPIQSFSPGSFSGLTSLENLVAVETKLAS--LESFPIGQLITLKKLNVAHNFIHS 142

Query: 213 FSLPSSIGLLANLQTLCLDQSMLGDI------AIIGKLKNLEILSFLNSDIVRLPGELGQ 266
             LP+    L NL  + L  + +  I       +    +    L    + I  +  +  Q
Sbjct: 143 CKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQ 202

Query: 267 LTKLRLLDLTDCLQLKFIVPNVLSSFTRLEEL 298
             KL  L L        I+   L +   L   
Sbjct: 203 GIKLHELTLRGNFNSSNIMKTCLQNLAGLHVH 234

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 49.3 bits (118), Expect = 8e-07
 Identities = 21/127 (16%), Positives = 46/127 (36%), Gaps = 24/127 (18%)

Query: 175 QLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPSSIGLLANLQTLCLDQSM 234
            L  L ++ N+F + N   N+F     L  +DL++ +L  +                   
Sbjct: 449 SLNTLKMAGNSFKD-NTLSNVFANTTNLTFLDLSKCQLEQISWG---------------- 491

Query: 235 LGDIAIIGKLKNLEILSFLNSDIVRLPGE-LGQLTKLRLLDLTDCLQLKFIVPNVLSSFT 293
                +   L  L++L+  +++++ L      QL  L  LD +   +++     +     
Sbjct: 492 -----VFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFN-RIETSKGILQHFPK 545

Query: 294 RLEELYM 300
            L    +
Sbjct: 546 SLAFFNL 552

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 48.1 bits (115), Expect = 2e-06
 Identities = 20/129 (15%), Positives = 42/129 (32%), Gaps = 8/129 (6%)

Query: 174 LQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPSSIGLLANLQTLCLDQS 233
           + ++   ++       +I    F  +  +  + L  + +  L          Q+L + + 
Sbjct: 261 VTIDEFRLTYTNDFSDDI--VKFHCLANVSAMSLAGVSIKYLEDVPKHF-KWQSLSIIRC 317

Query: 234 MLGDIAIIGKLKNLEILSFLNSDIVRLPGELGQLTKLRLLDLTDCLQLKFIVPNVLSSF- 292
            L     +  L  L+ L+   +    +  +   L  L  LDL+    L F      S   
Sbjct: 318 QLKQFPTLD-LPFLKSLTLTMNKG-SISFKKVALPSLSYLDLSRN-ALSFSGCCSYSDLG 374

Query: 293 -TRLEELYM 300
              L  L +
Sbjct: 375 TNSLRHLDL 383

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 40.8 bits (96), Expect = 4e-04
 Identities = 18/103 (17%), Positives = 32/103 (31%), Gaps = 6/103 (5%)

Query: 201 TLRVIDLTRMRLFSLPSSIGLLANLQTLCLDQSMLGDI--AIIGKLKNLEILSFLNSDIV 258
                     +L  +P    + ++ + + L  + L  +          L+ L     +I 
Sbjct: 12  PNITYQCMDQKLSKVPD--DIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIE 69

Query: 259 RL-PGELGQLTKLRLLDLTDCLQLKFIVPNVLSSFTRLEELYM 300
            +       L  L  L LT    ++   P   S  T LE L  
Sbjct: 70  TIEDKAWHGLHHLSNLILTGN-PIQSFSPGSFSGLTSLENLVA 111

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 60.5 bits (147), Expect = 1e-10
 Identities = 35/150 (23%), Positives = 62/150 (41%), Gaps = 9/150 (6%)

Query: 157 ISLLNSSIHEVSEE-FECL-QLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFS 214
           + L  + I  ++++ F     LE L +++N      +    F  +  LR + L   RL  
Sbjct: 37  LDLGKNRIKTLNQDEFASFPHLEELELNENIVS--AVEPGAFNNLFNLRTLGLRSNRLKL 94

Query: 215 LPSSI-GLLANLQTLCLDQSMLGDIA--IIGKLKNLEILSFLNSDIVRLP-GELGQLTKL 270
           +P  +   L+NL  L + ++ +  +   +   L NL+ L   ++D+V +       L  L
Sbjct: 95  IPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSL 154

Query: 271 RLLDLTDCLQLKFIVPNVLSSFTRLEELYM 300
             L L  C  L  I    LS    L  L +
Sbjct: 155 EQLTLEKC-NLTSIPTEALSHLHGLIVLRL 183

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 60.1 bits (146), Expect = 2e-10
 Identities = 28/131 (21%), Positives = 45/131 (34%), Gaps = 9/131 (6%)

Query: 175 QLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPS-SIGLLANLQTLCLDQS 233
            L+ L +  N  V   I    F G+ +L  + L +  L S+P+ ++  L  L  L L   
Sbjct: 129 NLKSLEVGDNDLVY--ISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHL 186

Query: 234 MLGDIAIIGKLKNLEILSFL----NSDIVRLPGELGQLTKLRLLDLTDCLQLKFIVPNVL 289
            +  I      K L  L  L       +  +         L  L +T C  L  +    +
Sbjct: 187 NINAIR-DYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHC-NLTAVPYLAV 244

Query: 290 SSFTRLEELYM 300
                L  L +
Sbjct: 245 RHLVYLRFLNL 255

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 59.7 bits (145), Expect = 3e-10
 Identities = 29/130 (22%), Positives = 57/130 (43%), Gaps = 7/130 (5%)

Query: 175 QLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPSSI-GLLANLQTLCLDQS 233
            L  L IS+N  V   + D +F+ +  L+ +++    L  +       L +L+ L L++ 
Sbjct: 105 NLTKLDISENKIVI--LLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKC 162

Query: 234 MLGDIA--IIGKLKNLEILSFLNSDIVRLP-GELGQLTKLRLLDLTDCLQLKFIVPNVLS 290
            L  I    +  L  L +L   + +I  +      +L +L++L+++    L  + PN L 
Sbjct: 163 NLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLY 222

Query: 291 SFTRLEELYM 300
               L  L +
Sbjct: 223 GLN-LTSLSI 231

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 57.4 bits (139), Expect = 2e-09
 Identities = 29/160 (18%), Positives = 59/160 (36%), Gaps = 30/160 (18%)

Query: 147 DEDALKKCSAISLL----NSSIHEVSEE-FECLQLEFLHISQNTFVEVNIPDNIFKGMKT 201
            + + K+   + +L       +  ++      L L  L I+        +P    + +  
Sbjct: 192 RDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTA--VPYLAVRHLVY 249

Query: 202 LRVIDLTRMRLFSLPSSI-GLLANLQTLCLDQSMLGDIAIIGKLKNLEILSFLNSDIVRL 260
           LR ++L+   + ++  S+   L  LQ + L            +L  +E  +F        
Sbjct: 250 LRFLNLSYNPISTIEGSMLHELLRLQEIQLVGG---------QLAVVEPYAFRG------ 294

Query: 261 PGELGQLTKLRLLDLTDCLQLKFIVPNVLSSFTRLEELYM 300
                 L  LR+L+++   QL  +  +V  S   LE L +
Sbjct: 295 ------LNYLRVLNVSGN-QLTTLEESVFHSVGNLETLIL 327

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 42.8 bits (101), Expect = 9e-05
 Identities = 20/124 (16%), Positives = 39/124 (31%), Gaps = 26/124 (20%)

Query: 157 ISLLNSSIHEVSEE-FECL-QLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFS 214
           +S+ + ++  V       L  L FL++S N      I  ++   +  L+ I L   +L  
Sbjct: 229 LSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIST--IEGSMLHELLRLQEIQLVGGQLAV 286

Query: 215 LPSSIGLLANLQTLCLDQSMLGDIAIIGKLKNLEILSFLNSDIVRLPGEL-GQLTKLRLL 273
           +                            L  L +L+   + +  L   +   +  L  L
Sbjct: 287 VEP--YAFRG-------------------LNYLRVLNVSGNQLTTLEESVFHSVGNLETL 325

Query: 274 DLTD 277
            L  
Sbjct: 326 ILDS 329

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 60.2 bits (146), Expect = 2e-10
 Identities = 17/127 (13%), Positives = 44/127 (34%), Gaps = 6/127 (4%)

Query: 176 LEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPSS--IGLLANLQTLCLDQS 233
            + ++++ N      + D        ++ +DL    + ++  +        L+ L L  +
Sbjct: 122 KKNIYLANNKITM--LRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179

Query: 234 MLGDIAIIGKLKNLEILSFLNSDIVRLPGELGQLTKLRLLDLTDCLQLKFIVPNVLSSFT 293
            + D+        L+ L   ++ +  +  E      +  + L +  +L  I    L    
Sbjct: 180 FIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNN-KLVLI-EKALRFSQ 237

Query: 294 RLEELYM 300
            LE   +
Sbjct: 238 NLEHFDL 244

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 57.5 bits (139), Expect = 2e-09
 Identities = 27/156 (17%), Positives = 59/156 (37%), Gaps = 5/156 (3%)

Query: 147 DEDALKKCSAISLLNSSIHEVSE-EFECL-QLEFLHISQNTFVEVNIPDNIFKGMKTLRV 204
                +    I L N+ I  + + +  C  ++++L +  N    VN  + +     TL  
Sbjct: 115 SCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAE-LAASSDTLEH 173

Query: 205 IDLTRMRLFSLPSSIGLLANLQTLCLDQSMLGDI-AIIGKLKNLEILSFLNSDIVRLPGE 263
           ++L    ++ +   + + A L+TL L  + L  +         +  +S  N+ +V +   
Sbjct: 174 LNLQYNFIYDVKGQV-VFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKA 232

Query: 264 LGQLTKLRLLDLTDCLQLKFIVPNVLSSFTRLEELY 299
           L     L   DL         + +  S   R++ + 
Sbjct: 233 LRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVA 268

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 52.9 bits (127), Expect = 5e-08
 Identities = 18/155 (11%), Positives = 55/155 (35%), Gaps = 23/155 (14%)

Query: 163 SIHEVSEEFECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSL-PSSIGL 221
           +IHE+ +     + +   ++ ++  +     ++ +    ++ +DL+   L  +  + +  
Sbjct: 1   AIHEIKQNGN--RYKIEKVTDSSLKQ--ALASLRQSAWNVKELDLSGNPLSQISAADLAP 56

Query: 222 LANLQTLCLDQSMLGDIAIIGKLKNLEILSFLNSDIVRLPG-----------------EL 264
              L+ L L  ++L +   +  L  L  L   N+ +  L                     
Sbjct: 57  FTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSC 116

Query: 265 GQLTKLRLLDLTDCLQLKFIVPNVLSSFTRLEELY 299
            +    + + L +  ++  +        +R++ L 
Sbjct: 117 SRGQGKKNIYLANN-KITMLRDLDEGCRSRVQYLD 150

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 60.4 bits (147), Expect = 2e-10
 Identities = 30/147 (20%), Positives = 58/147 (39%), Gaps = 11/147 (7%)

Query: 155 SAISLLNSSIHEVSEEFECLQLEFLHISQNTFVEVNIPDNI-FKGMKTLRVIDLTRMRLF 213
           SA    ++ I+++  +    +     + +      N+ D +    +  +  +   R+ + 
Sbjct: 5   SATITQDTPINQIFTDTALAEKMKTVLGKT-----NVTDTVSQTDLDQVTTLQADRLGIK 59

Query: 214 SLPSSIGLLANLQTLCLDQSMLGDIAIIGKLKNLEILSFLNSDIVRLPGELGQLTKLRLL 273
           S+   +  L NL  +    + L DI  +  L  L  +   N+ I  +   L  LT L  L
Sbjct: 60  SI-DGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADIT-PLANLTNLTGL 117

Query: 274 DLTDCLQLKFIVPNVLSSFTRLEELYM 300
            L +  Q+  I P  L + T L  L +
Sbjct: 118 TLFNN-QITDIDP--LKNLTNLNRLEL 141

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 60.0 bits (146), Expect = 2e-10
 Identities = 31/151 (20%), Positives = 63/151 (41%), Gaps = 9/151 (5%)

Query: 149 DALKKCSAISLLNSSIHEVSEEFECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLT 208
            AL +     L  +++ +   + +  Q+  L   +     +   D + + +  L  I+ +
Sbjct: 21  TALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRL---GIKSIDGV-EYLNNLTQINFS 76

Query: 209 RMRLFSLPSSIGLLANLQTLCLDQSMLGDIAIIGKLKNLEILSFLNSDIVRLPGELGQLT 268
             +L  +   +  L  L  + ++ + + DI  +  L NL  L+  N+ I  +   L  LT
Sbjct: 77  NNQLTDIT-PLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDID-PLKNLT 134

Query: 269 KLRLLDLTDCLQLKFIVPNVLSSFTRLEELY 299
            L  L+L+    +  I    LS  T L++L 
Sbjct: 135 NLNRLELSSN-TISDISA--LSGLTSLQQLS 162

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 60.0 bits (146), Expect = 2e-10
 Identities = 29/150 (19%), Positives = 60/150 (40%), Gaps = 9/150 (6%)

Query: 151 LKKCSAISLLNSSIHEVSEEFECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRM 210
           L    ++   N+ I +++       L+ L ++ N   ++         +  L  +DL   
Sbjct: 198 LTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT----LASLTNLTDLDLANN 253

Query: 211 RLFSLPSSIGLLANLQTLCLDQSMLGDIAIIGKLKNLEILSFLNSDIVRLPGELGQLTKL 270
           ++ +L   +  L  L  L L  + + +I+ +  L  L  L    + +  +   +  L  L
Sbjct: 254 QISNLAP-LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDIS-PISNLKNL 311

Query: 271 RLLDLTDCLQLKFIVPNVLSSFTRLEELYM 300
             L L     +  I P  +SS T+L+ L+ 
Sbjct: 312 TYLTLYFN-NISDISP--VSSLTKLQRLFF 338

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 58.8 bits (143), Expect = 5e-10
 Identities = 38/141 (26%), Positives = 60/141 (42%), Gaps = 9/141 (6%)

Query: 160 LNSSIHEVSEEFECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPSSI 219
             + + ++        LE L IS N   ++++       +  L  +  T  ++  +   +
Sbjct: 163 FGNQVTDLKPLANLTTLERLDISSNKVSDISV----LAKLTNLESLIATNNQISDITP-L 217

Query: 220 GLLANLQTLCLDQSMLGDIAIIGKLKNLEILSFLNSDIVRLPGELGQLTKLRLLDLTDCL 279
           G+L NL  L L+ + L DI  +  L NL  L   N+ I  L   L  LTKL  L L    
Sbjct: 218 GILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGAN- 275

Query: 280 QLKFIVPNVLSSFTRLEELYM 300
           Q+  I P  L+  T L  L +
Sbjct: 276 QISNISP--LAGLTALTNLEL 294

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 55.0 bits (133), Expect = 9e-09
 Identities = 33/150 (22%), Positives = 59/150 (39%), Gaps = 10/150 (6%)

Query: 151 LKKCSAISLLNSSIHEVSEEFECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRM 210
           L + + +      I  +        L  ++ S N     +I     K +  L  I +   
Sbjct: 45  LDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLT--DITP--LKNLTKLVDILMNNN 100

Query: 211 RLFSLPSSIGLLANLQTLCLDQSMLGDIAIIGKLKNLEILSFLNSDIVRLPGELGQLTKL 270
           ++  +   +  L NL  L L  + + DI  +  L NL  L   ++ I  +   L  LT L
Sbjct: 101 QIADITP-LANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDIS-ALSGLTSL 158

Query: 271 RLLDLTDCLQLKFIVPNVLSSFTRLEELYM 300
           + L   +  Q+  + P  L++ T LE L +
Sbjct: 159 QQLSFGN--QVTDLKP--LANLTTLERLDI 184

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 45.7 bits (109), Expect = 1e-05
 Identities = 20/156 (12%), Positives = 52/156 (33%), Gaps = 10/156 (6%)

Query: 147 DEDALKKCSAISLLNSS---IHEVSEEFECLQLEFLHISQNTFVEVNIPDNIFKGMKTLR 203
           +   L   +A++ L  +   + ++S       L +L +  N   +++        +  L+
Sbjct: 279 NISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP----VSSLTKLQ 334

Query: 204 VIDLTRMRLFSLPSSIGLLANLQTLCLDQSMLGDIAIIGKLKNLEILSFLNSDIVRLPGE 263
            +     ++  + S +  L N+  L    + + D+  +  L  +  L   +      P  
Sbjct: 335 RLFFYNNKVSDVSS-LANLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQAWTNAPVN 393

Query: 264 LGQLTKLRLLDLTDCLQLKFIVPNVLSSFTRLEELY 299
                 + + +    +    I P  +S      E  
Sbjct: 394 Y--KANVSIPNTVKNVTGALIAPATISDGGSYTEPD 427

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 59.6 bits (145), Expect = 3e-10
 Identities = 30/131 (22%), Positives = 54/131 (41%), Gaps = 9/131 (6%)

Query: 175 QLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLP-SSIGLLANLQTLCLDQS 233
           QL  L +  NT     +   + + +  L+V++L    L  L   +     NL  L L  +
Sbjct: 50  QLTSLDVGFNTIS--KLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSN 107

Query: 234 MLGDI--AIIGKLKNLEILSFLNSDIVRL-PGELGQLTKLRLLDLTDCLQLKFIVPNVLS 290
            +  I      K KNL  L   ++ +     G   QL  L+ L L++  +++ +    L 
Sbjct: 108 SIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNN-KIQALKSEELD 166

Query: 291 SF--TRLEELY 299
            F  + L++L 
Sbjct: 167 IFANSSLKKLE 177

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 55.8 bits (135), Expect = 7e-09
 Identities = 25/146 (17%), Positives = 60/146 (41%), Gaps = 14/146 (9%)

Query: 168 SEEFECL-QLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPSS-IGLLANL 225
              F  +  L+ L + +     V+   + F+ ++ L ++DL+   + ++    +  L  L
Sbjct: 447 RNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKL 506

Query: 226 QTLCLDQSMLGDI----------AIIGKLKNLEILSFLNSDIVRL-PGELGQLTKLRLLD 274
           + L L  + L  +            +  L +L IL+  ++    +       L +L+++D
Sbjct: 507 EILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIID 566

Query: 275 LTDCLQLKFIVPNVLSSFTRLEELYM 300
           L     L  +  +V ++   L+ L +
Sbjct: 567 LGLN-NLNTLPASVFNNQVSLKSLNL 591

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 54.6 bits (132), Expect = 2e-08
 Identities = 26/127 (20%), Positives = 50/127 (39%), Gaps = 22/127 (17%)

Query: 175 QLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSL-PSSIGLLANLQTLCLDQS 233
            LE L +  N   +  +    ++G++ +  I L+  +   L  +S  L+ +LQ L L + 
Sbjct: 406 HLEVLDLGLNEIGQ-ELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRV 464

Query: 234 MLGDIAIIGKLKNLEILSFLNSDIVRLPGELGQLTKLRLLDLTDCLQLKFIVPNVLSSFT 293
            L                    ++   P     L  L +LDL++   +  I  ++L    
Sbjct: 465 AL-------------------KNVDSSPSPFQPLRNLTILDLSNN-NIANINDDMLEGLE 504

Query: 294 RLEELYM 300
           +LE L +
Sbjct: 505 KLEILDL 511

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 54.6 bits (132), Expect = 2e-08
 Identities = 27/135 (20%), Positives = 54/135 (40%), Gaps = 12/135 (8%)

Query: 175 QLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDL--TRMRLFSLPSSIGL---LANLQTLC 229
            LE L++  N      I  N+F G+  L+ + L  +   L +L +   +    + L  L 
Sbjct: 330 CLEHLNMEDNDIPG--IKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILN 387

Query: 230 LDQSMLGDI--AIIGKLKNLEILSFLNSDIVRL--PGELGQLTKLRLLDLTDCLQLKFIV 285
           L ++ +  I       L +LE+L    ++I +     E   L  +  + L+   +   + 
Sbjct: 388 LTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYN-KYLQLT 446

Query: 286 PNVLSSFTRLEELYM 300
            N  +    L+ L +
Sbjct: 447 RNSFALVPSLQRLML 461

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 53.1 bits (128), Expect = 5e-08
 Identities = 23/143 (16%), Positives = 50/143 (34%), Gaps = 18/143 (12%)

Query: 160 LNSSIHEVSEEFECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSL-PSS 218
           L+++ +      +   L  L +S N      + ++ F  +  L    L    +  L   S
Sbjct: 234 LSTTSNTTFLGLKWTNLTMLDLSYNNLNV--VGNDSFAWLPQLEYFFLEYNNIQHLFSHS 291

Query: 219 IGLLANLQTLCLDQSMLGDIAIIGKLKNLEILSFLNSDIVRL-PGELGQLTKLRLLDLTD 277
           +  L N++ L L              ++    S   + + ++       L  L  L++ D
Sbjct: 292 LHGLFNVRYLNLK-------------RSFTKQSISLASLPKIDDFSFQWLKCLEHLNMED 338

Query: 278 CLQLKFIVPNVLSSFTRLEELYM 300
              +  I  N+ +    L+ L +
Sbjct: 339 N-DIPGIKSNMFTGLINLKYLSL 360

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 51.9 bits (125), Expect = 1e-07
 Identities = 24/103 (23%), Positives = 44/103 (42%), Gaps = 6/103 (5%)

Query: 201 TLRVIDLTRMRLFSLPSSIGLLANLQTLCLDQSMLGDI--AIIGKLKNLEILSFLNSDIV 258
           +  V D + ++L  +P    L  N+  L L  + L  +  A   +   L  L    + I 
Sbjct: 5   SHEVADCSHLKLTQVPD--DLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTIS 62

Query: 259 RL-PGELGQLTKLRLLDLTDCLQLKFIVPNVLSSFTRLEELYM 300
           +L P    +L  L++L+L    +L  +     +  T L EL++
Sbjct: 63  KLEPELCQKLPMLKVLNLQHN-ELSQLSDKTFAFCTNLTELHL 104

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 50.0 bits (120), Expect = 4e-07
 Identities = 35/137 (25%), Positives = 55/137 (40%), Gaps = 12/137 (8%)

Query: 173 CLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSL-PSSIGLLANLQTLCLD 231
           C  L  LH+  N+  +  I +N F   K L  +DL+   L S    +   L NLQ L L 
Sbjct: 96  CTNLTELHLMSNSIQK--IKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLS 153

Query: 232 ----QSMLGDIAIIGKLKNLEILSFLNSDIVRL-PGELGQLTKLRLLDLTDCLQLKFIVP 286
               Q++  +   I    +L+ L   ++ I    PG    + +L  L L +  QL   + 
Sbjct: 154 NNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNV-QLGPSLT 212

Query: 287 NVLSSF---TRLEELYM 300
             L      T +  L +
Sbjct: 213 EKLCLELANTSIRNLSL 229

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 49.2 bits (118), Expect = 9e-07
 Identities = 24/137 (17%), Positives = 46/137 (33%), Gaps = 14/137 (10%)

Query: 175 QLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPS---SIGLLANLQTLCLD 231
            L  L +S N              ++ L+ + L+  ++ +L S    I   ++L+ L L 
Sbjct: 122 NLITLDLSHNGLSS--TKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELS 179

Query: 232 QSMLGDI--AIIGKLKNLEILS----FLNSDIVRLPGELGQLTKLRLLDLTDCLQLKFIV 285
            + + +        +  L  L      L   +          T +R L L++  QL    
Sbjct: 180 SNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNS-QLSTTS 238

Query: 286 PNVLSS--FTRLEELYM 300
                   +T L  L +
Sbjct: 239 NTTFLGLKWTNLTMLDL 255

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 59.5 bits (145), Expect = 4e-10
 Identities = 33/139 (23%), Positives = 63/139 (45%), Gaps = 10/139 (7%)

Query: 170 EFECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLF-SLPSSIGLLANLQTL 228
                 L++L +++N F    IPD +     TL  +DL+    + ++P   G  + L++L
Sbjct: 265 PLPLKSLQYLSLAENKF-TGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESL 323

Query: 229 CLDQSML-GDI--AIIGKLKNLEILSFLNSDIV-RLPGELGQLT-KLRLLDLTDCLQLKF 283
            L  +   G++    + K++ L++L    ++    LP  L  L+  L  LDL+       
Sbjct: 324 ALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSN-NFSG 382

Query: 284 IVPNVL--SSFTRLEELYM 300
            +   L  +    L+ELY+
Sbjct: 383 PILPNLCQNPKNTLQELYL 401

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 59.2 bits (144), Expect = 4e-10
 Identities = 30/164 (18%), Positives = 58/164 (35%), Gaps = 15/164 (9%)

Query: 146 PDEDALKKCSAISLLN------SSIHEVSEEFECLQLEFLHISQNTFVEVNIPDNIFK-- 197
               +L  CS +  LN          +VS   +   LE L +S N+              
Sbjct: 117 TTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSI-SGANVVGWVLSD 175

Query: 198 GMKTLRVIDLTRMRLFSLPSSIGLLANLQTLCLDQSML-GDIAIIGKLKNLEILSFLNSD 256
           G   L+ + ++  ++ S    +    NL+ L +  +     I  +G    L+ L    + 
Sbjct: 176 GCGELKHLAISGNKI-SGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNK 234

Query: 257 IV-RLPGELGQLTKLRLLDLTDCLQLKFIVPNVLSSFTRLEELY 299
           +       +   T+L+LL+++   Q    +P        L+ L 
Sbjct: 235 LSGDFSRAISTCTELKLLNISSN-QFVGPIPP--LPLKSLQYLS 275

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 55.3 bits (134), Expect = 1e-08
 Identities = 36/134 (26%), Positives = 61/134 (45%), Gaps = 11/134 (8%)

Query: 173 CLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLF-SLPSSIGLLANLQTLCLD 231
           C +L  LH+S N      IP ++   +  LR + L    L   +P  +  +  L+TL LD
Sbjct: 417 CSELVSLHLSFNYLSG-TIPSSLGS-LSKLRDLKLWLNMLEGEIPQELMYVKTLETLILD 474

Query: 232 QSML-GDI-AIIGKLKNLEILSFLNSDIV-RLPGELGQLTKLRLLDLTDCLQLKF--IVP 286
            + L G+I + +    NL  +S  N+ +   +P  +G+L  L +L L++     F   +P
Sbjct: 475 FNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNN---SFSGNIP 531

Query: 287 NVLSSFTRLEELYM 300
             L     L  L +
Sbjct: 532 AELGDCRSLIWLDL 545

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 52.2 bits (126), Expect = 8e-08
 Identities = 32/136 (23%), Positives = 54/136 (39%), Gaps = 8/136 (5%)

Query: 171 FECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLF-SLPSSIG--LLANLQT 227
            +   L+ L +S N F    +P+++     +L  +DL+       +  ++       LQ 
Sbjct: 340 LKMRGLKVLDLSFNEFSG-ELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQE 398

Query: 228 LCLDQSML-GDI-AIIGKLKNLEILSFLNSDIV-RLPGELGQLTKLRLLDLTDCLQLKFI 284
           L L  +   G I   +     L  L    + +   +P  LG L+KLR L L     L+  
Sbjct: 399 LYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLN-MLEGE 457

Query: 285 VPNVLSSFTRLEELYM 300
           +P  L     LE L +
Sbjct: 458 IPQELMYVKTLETLIL 473

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 51.1 bits (123), Expect = 2e-07
 Identities = 29/153 (18%), Positives = 45/153 (29%), Gaps = 27/153 (17%)

Query: 171 FECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLF-SLPSSIGLLANLQTLC 229
                LE L +  N      IP  +      L  I L+  RL   +P  IG L NL  L 
Sbjct: 463 MYVKTLETLILDFNDL-TGEIPSGLSN-CTNLNWISLSNNRLTGEIPKWIGRLENLAILK 520

Query: 230 LDQSML-GDI-AIIGKLKNLEILSF---------------------LNSDIVRLPGELGQ 266
           L  +   G+I A +G  ++L  L                        N    +    +  
Sbjct: 521 LSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKN 580

Query: 267 LTKLRLLDLTD-CLQLKFIVPNVLSSFTRLEEL 298
               +        L+ + I    L+  +     
Sbjct: 581 DGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPC 613

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 48.0 bits (115), Expect = 2e-06
 Identities = 21/107 (19%), Positives = 42/107 (39%), Gaps = 8/107 (7%)

Query: 202 LRVIDLTRMRLF----SLPSSIGLLANLQTLCLDQSML-GDIAIIGKLKNLEILSFLNSD 256
           +  IDL+   L     ++ SS+  L  L++L L  S + G ++      +L  L    + 
Sbjct: 52  VTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNS 111

Query: 257 IV-RLP--GELGQLTKLRLLDLTDCLQLKFIVPNVLSSFTRLEELYM 300
           +   +     LG  + L+ L+++          +       LE L +
Sbjct: 112 LSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDL 158

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 46.4 bits (111), Expect = 6e-06
 Identities = 20/128 (15%), Positives = 40/128 (31%), Gaps = 5/128 (3%)

Query: 173 CLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLF-SLPSSIG-LLANLQTLCL 230
              L  L +S N+F   NIP  +    ++L  +DL       ++P+++      +    +
Sbjct: 513 LENLAILKLSNNSFSG-NIPAELGD-CRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFI 570

Query: 231 DQSMLGDIAIIGKLKNLEILSFLNSDIVRLPGELGQLTKLRLLDLTDCLQLKFIVPNVLS 290
                  I   G  K       L         +L +L+     ++T              
Sbjct: 571 AGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITS-RVYGGHTSPTFD 629

Query: 291 SFTRLEEL 298
           +   +  L
Sbjct: 630 NNGSMMFL 637

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 44.1 bits (105), Expect = 4e-05
 Identities = 30/152 (19%), Positives = 58/152 (38%), Gaps = 13/152 (8%)

Query: 155 SAISLLNSSIHEVSEEFECLQLEFLHISQNTFV-EVNIPDNIFKGMKTLRVIDLTRMRLF 213
             I+    +             +  H + N    +    + + + + T    ++T     
Sbjct: 563 GKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNR-LSTRNPCNITSRVYG 621

Query: 214 -SLPSSIGLLANLQTLCLDQSML-GDI-AIIGKLKNLEILS----FLNSDIVRLPGELGQ 266
                +     ++  L +  +ML G I   IG +  L IL+     ++  I   P E+G 
Sbjct: 622 GHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSI---PDEVGD 678

Query: 267 LTKLRLLDLTDCLQLKFIVPNVLSSFTRLEEL 298
           L  L +LDL+   +L   +P  +S+ T L E+
Sbjct: 679 LRGLNILDLS-SNKLDGRIPQAMSALTMLTEI 709

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 41.0 bits (97), Expect = 4e-04
 Identities = 20/118 (16%), Positives = 40/118 (33%), Gaps = 11/118 (9%)

Query: 191 IPDNIFKGMKTLRVIDLTRMRLFSLPSSIGLLANLQTLCLDQSMLG----DIAIIGKLKN 246
           +  ++   +  L  + L+   +    S     A+L +L L ++ L      +  +G    
Sbjct: 69  VSSSLLS-LTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSG 127

Query: 247 LEIL--SFLNSDIVRLPGELGQLTKLRLLDLTDCLQLKFIVP---NVLSSFTRLEELY 299
           L+ L  S    D         +L  L +LDL+    +         +      L+ L 
Sbjct: 128 LKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSAN-SISGANVVGWVLSDGCGELKHLA 184

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 57.3 bits (139), Expect = 4e-10
 Identities = 29/138 (21%), Positives = 52/138 (37%), Gaps = 21/138 (15%)

Query: 181 ISQNTFVEVNIPDNIFK------------------GMKTLRVIDLTRMRLFSLPSSIGLL 222
             + +   VNIPD+ FK                   M +L  I L  + +  L + I   
Sbjct: 7   GLKASQDNVNIPDSTFKAYLNGLLGQSSTANITEAQMNSLTYITLANINVTDL-TGIEYA 65

Query: 223 ANLQTLCLDQSMLGDIAIIGKLKNLEILSFLNSDIV-RLPGELGQLTKLRLLDLTDCLQL 281
            N++ L ++     +   I  L NLE L  +  D+       L  LT L LLD++     
Sbjct: 66  HNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHS-AH 124

Query: 282 KFIVPNVLSSFTRLEELY 299
              +   +++  ++  + 
Sbjct: 125 DDSILTKINTLPKVNSID 142

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 52.7 bits (127), Expect = 1e-08
 Identities = 24/153 (15%), Positives = 58/153 (37%), Gaps = 12/153 (7%)

Query: 151 LKKCSAISLLNSSIHEVSEEFECLQLEFLHISQNTFVEVNIPD-NIFKGMKTLRVIDLTR 209
           +   + I+L N ++ +++       ++ L I+       +  + N   G+  L  + +  
Sbjct: 43  MNSLTYITLANINVTDLTGIEYAHNIKDLTINNI-----HATNYNPISGLSNLERLRIMG 97

Query: 210 MRLFSL-PSSIGLLANLQTLCLDQSMLGDIAI--IGKLKNLEILSFLNSDIVRLPGELGQ 266
             + S    ++  L +L  L +  S   D  +  I  L  +  +    +  +     L  
Sbjct: 98  KDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKT 157

Query: 267 LTKLRLLDLTDCLQLKFIVPNVLSSFTRLEELY 299
           L +L+ L++     +       +  F +L +LY
Sbjct: 158 LPELKSLNIQFD-GVHDYRG--IEDFPKLNQLY 187

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 45.7 bits (109), Expect = 3e-06
 Identities = 22/105 (20%), Positives = 40/105 (38%), Gaps = 5/105 (4%)

Query: 175 QLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRL-FSLPSSIGLLANLQTLCLDQ- 232
            LE L I         IP+    G+ +L ++D++      S+ + I  L  + ++ L   
Sbjct: 89  NLERLRIMGKDVTSDKIPN--LSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYN 146

Query: 233 SMLGDIAIIGKLKNLEILSFLNSDIVRLPGELGQLTKLRLLDLTD 277
             + DI  +  L  L+ L+     +    G +    KL  L    
Sbjct: 147 GAITDIMPLKTLPELKSLNIQFDGVHDYRG-IEDFPKLNQLYAFS 190

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 39.9 bits (94), Expect = 3e-04
 Identities = 14/86 (16%), Positives = 27/86 (31%), Gaps = 5/86 (5%)

Query: 175 QLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPSSIGLLANLQTLCLDQSM 234
            L  L IS +   +  +       +  +  IDL+     +    +  L  L++L +    
Sbjct: 113 SLTLLDISHSAHDDSILTK--INTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDG 170

Query: 235 LGDIAIIGKLKNLEILSFLN---SDI 257
           + D   I     L  L   +      
Sbjct: 171 VHDYRGIEDFPKLNQLYAFSQTIGGK 196

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 58.9 bits (143), Expect = 4e-10
 Identities = 29/158 (18%), Positives = 60/158 (37%), Gaps = 9/158 (5%)

Query: 147 DEDALKKCSAISLLNSSIHEVSEEFECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVID 206
                 + + + L ++++ + +       L  + +S N   +  I  + F  M+ L  + 
Sbjct: 221 RGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEK--IMYHPFVKMQRLERLY 278

Query: 207 LTRMRLFSLPSSIGLLANLQTLCLDQSMLGDI-AIIGKLKNLEILSFLNSDIVRLPGELG 265
           ++  RL +L      +  L+ L L  + L  +     +   LE L   ++ IV L   L 
Sbjct: 279 ISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLK--LS 336

Query: 266 QLTKLRLLDLTD----CLQLKFIVPNVLSSFTRLEELY 299
               L+ L L+     C  L+ +  NV        + +
Sbjct: 337 THHTLKNLTLSHNDWDCNSLRALFRNVARPAVDDADQH 374

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 55.4 bits (134), Expect = 5e-09
 Identities = 30/156 (19%), Positives = 57/156 (36%), Gaps = 13/156 (8%)

Query: 147 DEDALKKCSAISLLNSSIHEVSEEFECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVID 206
           D   +      ++  + +  ++     + +E L  S N+     +   +      L ++ 
Sbjct: 181 DLSLIPSLFHANVSYNLLSTLAI---PIAVEELDASHNSINV--VRGPVNVE---LTILK 232

Query: 207 LTRMRLFSLPSSIGLLANLQTLCLDQSMLGDIA--IIGKLKNLEILSFLNSDIVRLPGEL 264
           L    L      +     L  + L  + L  I      K++ LE L   N+ +V L    
Sbjct: 233 LQHNNLTDTAWLLNY-PGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYG 291

Query: 265 GQLTKLRLLDLTDCLQLKFIVPNVLSSFTRLEELYM 300
             +  L++LDL+    L  +       F RLE LY+
Sbjct: 292 QPIPTLKVLDLSHN-HLLHV-ERNQPQFDRLENLYL 325

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 54.3 bits (131), Expect = 1e-08
 Identities = 30/144 (20%), Positives = 59/144 (40%), Gaps = 24/144 (16%)

Query: 175 QLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPSSIGLLANLQTLCLDQSM 234
           +L  L +S N      I D+ F+   +L+ + L+  RL  +   + L+ +L    +  ++
Sbjct: 142 KLTTLSMSNNNLE--RIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNL 197

Query: 235 LGDIAIIGKLK------------------NLEILSFLNSDIVRLPGELGQLTKLRLLDLT 276
           L  +AI   ++                   L IL   ++++      L     L  +DL+
Sbjct: 198 LSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAW-LLNYPGLVEVDLS 256

Query: 277 DCLQLKFIVPNVLSSFTRLEELYM 300
              +L+ I+ +      RLE LY+
Sbjct: 257 YN-ELEKIMYHPFVKMQRLERLYI 279

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 53.9 bits (130), Expect = 2e-08
 Identities = 29/156 (18%), Positives = 65/156 (41%), Gaps = 9/156 (5%)

Query: 146 PDEDALKKCSAISLLNSSIHEVSEE-FECL-QLEFLHISQNTFVEVNIPDNIFKGMKTLR 203
            ++  L     ++  NS++ ++     +   Q+E L+++     E  I    F    T++
Sbjct: 39  FEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEE--IDTYAFAYAHTIQ 96

Query: 204 VIDLTRMRLFSLPSSIGL-LANLQTLCLDQSMLGDIA--IIGKLKNLEILSFLNSDIVRL 260
            + +    +  LP  +   +  L  L L+++ L  +   I      L  LS  N+++ R+
Sbjct: 97  KLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERI 156

Query: 261 PGELGQ-LTKLRLLDLTDCLQLKFIVPNVLSSFTRL 295
             +  Q  T L+ L L+   +L  +  +++ S    
Sbjct: 157 EDDTFQATTSLQNLQLSSN-RLTHVDLSLIPSLFHA 191

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 58.3 bits (142), Expect = 6e-10
 Identities = 20/109 (18%), Positives = 41/109 (37%), Gaps = 7/109 (6%)

Query: 173 CLQLEFLHISQNTFV-EVNIPDNIFKGMKTLRVIDLTRMRLFS--LPSSIGLLANLQTLC 229
             ++  L +S         IP ++   +  L  + +  +      +P +I  L  L  L 
Sbjct: 49  TYRVNNLDLSGLNLPKPYPIPSSLAN-LPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLY 107

Query: 230 LDQSML-GDI-AIIGKLKNLEILSFLNSDIV-RLPGELGQLTKLRLLDL 275
           +  + + G I   + ++K L  L F  + +   LP  +  L  L  +  
Sbjct: 108 ITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITF 156

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 54.1 bits (131), Expect = 1e-08
 Identities = 30/103 (29%), Positives = 42/103 (40%), Gaps = 6/103 (5%)

Query: 176 LEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLF-SLPSSIGLLANLQTLCLDQSM 234
              + IS+N      IP         L  +DL+R  L        G   N Q + L ++ 
Sbjct: 176 FTSMTISRNRLTG-KIPPTF--ANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNS 232

Query: 235 L-GDIAIIGKLKNLEILSFLNSDIV-RLPGELGQLTKLRLLDL 275
           L  D+  +G  KNL  L   N+ I   LP  L QL  L  L++
Sbjct: 233 LAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNV 275

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 52.2 bits (126), Expect = 6e-08
 Identities = 34/136 (25%), Positives = 56/136 (41%), Gaps = 15/136 (11%)

Query: 173 CLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLF-SLPSSIGLLANLQTLCLD 231
             QL +L+I+        IPD + + +KTL  +D +   L  +LP SI  L NL  +  D
Sbjct: 100 LTQLHYLYITHTNVSG-AIPDFLSQ-IKTLVTLDFSYNALSGTLPPSISSLPNLVGITFD 157

Query: 232 QSML-GDI-AIIGKLKNLE---ILS--FLNSDIVRLPGELGQLTKLRLLDLTDCLQLKFI 284
            + + G I    G    L     +S   L   I   P     L  L  +DL+    L+  
Sbjct: 158 GNRISGAIPDSYGSFSKLFTSMTISRNRLTGKI---PPTFANL-NLAFVDLSRN-MLEGD 212

Query: 285 VPNVLSSFTRLEELYM 300
              +  S    +++++
Sbjct: 213 ASVLFGSDKNTQKIHL 228

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 43.3 bits (103), Expect = 5e-05
 Identities = 21/93 (22%), Positives = 31/93 (33%), Gaps = 11/93 (11%)

Query: 215 LPSSIGLLANLQTLCLDQSML-GDIAI---IGKLKNLEILSFLNSDIVRL----PGELGQ 266
           L  +      +  L L    L     I   +  L  L  L      I  L    P  + +
Sbjct: 42  LCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYI--GGINNLVGPIPPAIAK 99

Query: 267 LTKLRLLDLTDCLQLKFIVPNVLSSFTRLEELY 299
           LT+L  L +T    +   +P+ LS    L  L 
Sbjct: 100 LTQLHYLYITHT-NVSGAIPDFLSQIKTLVTLD 131

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 41.8 bits (99), Expect = 1e-04
 Identities = 18/86 (20%), Positives = 40/86 (46%), Gaps = 5/86 (5%)

Query: 171 FECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLF-SLPSSIGLLANLQTLC 229
                 + +H+++N+    ++        K L  +DL   R++ +LP  +  L  L +L 
Sbjct: 218 GSDKNTQKIHLAKNSL-AFDLGK--VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLN 274

Query: 230 LDQSML-GDIAIIGKLKNLEILSFLN 254
           +  + L G+I   G L+  ++ ++ N
Sbjct: 275 VSFNNLCGEIPQGGNLQRFDVSAYAN 300

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 58.6 bits (142), Expect = 6e-10
 Identities = 27/129 (20%), Positives = 51/129 (39%), Gaps = 6/129 (4%)

Query: 175 QLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPSSIGLLANLQTLCLDQSM 234
            L  L + +   +   I +  F+G+  LR ++L    L  +P+    L  L  L L  + 
Sbjct: 161 SLRRLDLGELKRLS-YISEGAFEGLSNLRYLNLAMCNLREIPNLTP-LIKLDELDLSGNH 218

Query: 235 LGDIA--IIGKLKNLEILSFLNSDIVRLP-GELGQLTKLRLLDLTDCLQLKFIVPNVLSS 291
           L  I       L +L+ L  + S I  +       L  L  ++L     L  +  ++ + 
Sbjct: 219 LSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHN-NLTLLPHDLFTP 277

Query: 292 FTRLEELYM 300
              LE +++
Sbjct: 278 LHHLERIHL 286

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 57.8 bits (140), Expect = 1e-09
 Identities = 33/130 (25%), Positives = 55/130 (42%), Gaps = 6/130 (4%)

Query: 175 QLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPSSI-GLLANLQTLCLDQS 233
               L++ +N      I  N FK ++ L ++ L+R  + ++       LANL TL L  +
Sbjct: 65  NTRLLNLHENQIQ--IIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN 122

Query: 234 MLGDIA--IIGKLKNLEILSFLNSDIVRLP-GELGQLTKLRLLDLTDCLQLKFIVPNVLS 290
            L  I       L  L+ L   N+ I  +P     ++  LR LDL +  +L +I      
Sbjct: 123 RLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFE 182

Query: 291 SFTRLEELYM 300
             + L  L +
Sbjct: 183 GLSNLRYLNL 192

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 40.1 bits (94), Expect = 5e-04
 Identities = 17/98 (17%), Positives = 42/98 (42%), Gaps = 5/98 (5%)

Query: 158 SLLNSSIHEVSEEFECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPS 217
           +L   ++ E+      ++L+ L +S N      I    F+G+  L+ + + + ++  +  
Sbjct: 191 NLAMCNLREIPNLTPLIKLDELDLSGNHLS--AIRPGSFQGLMHLQKLWMIQSQIQVIER 248

Query: 218 -SIGLLANLQTLCLDQSMLGDIA--IIGKLKNLEILSF 252
            +   L +L  + L  + L  +   +   L +LE +  
Sbjct: 249 NAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHL 286

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 58.2 bits (141), Expect = 7e-10
 Identities = 22/154 (14%), Positives = 54/154 (35%), Gaps = 16/154 (10%)

Query: 159 LLNSSIHEVSEE-FECL-QLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLP 216
               +  ++  + F  L  LE L I  +            K ++ +  + L   +   L 
Sbjct: 157 GNMDTFTKIQRKDFAGLTFLEELEIDASDLQS--YEPKSLKSIQNVSHLILHMKQHILLL 214

Query: 217 SSI-GLLANLQTLCLDQSMLGDIAI----------IGKLKNLEILSFLNSDIVRLPGELG 265
                + ++++ L L  + L               + K      +   +  + ++   L 
Sbjct: 215 EIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLN 274

Query: 266 QLTKLRLLDLTDCLQLKFIVPNVLSSFTRLEELY 299
           Q++ L  L+ +   QLK +   +    T L++++
Sbjct: 275 QISGLLELEFSRN-QLKSVPDGIFDRLTSLQKIW 307

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 54.0 bits (130), Expect = 2e-08
 Identities = 28/130 (21%), Positives = 54/130 (41%), Gaps = 7/130 (5%)

Query: 176 LEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPSSI-GLLANLQTLCLDQSM 234
           ++ L +S N      I ++  +    L+ + LT   + ++       L +L+ L L  + 
Sbjct: 54  VKSLDLSNNRIT--YISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY 111

Query: 235 LGDI--AIIGKLKNLEILSFLNSDIVRLP--GELGQLTKLRLLDLTDCLQLKFIVPNVLS 290
           L ++  +    L +L  L+ L +    L        LTKL++L + +      I     +
Sbjct: 112 LSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFA 171

Query: 291 SFTRLEELYM 300
             T LEEL +
Sbjct: 172 GLTFLEELEI 181

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 58.2 bits (141), Expect = 8e-10
 Identities = 26/131 (19%), Positives = 54/131 (41%), Gaps = 6/131 (4%)

Query: 173 CLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPSSIGLLANLQTLCLDQ 232
              L  L + +   +E  I +  F+G+  L+ ++L    +  +P+    L  L+ L +  
Sbjct: 170 VPSLMRLDLGELKKLE-YISEGAFEGLFNLKYLNLGMCNIKDMPNLTP-LVGLEELEMSG 227

Query: 233 SMLGDIA--IIGKLKNLEILSFLNSDIVRLPGE-LGQLTKLRLLDLTDCLQLKFIVPNVL 289
           +   +I       L +L+ L  +NS +  +       L  L  L+L     L  +  ++ 
Sbjct: 228 NHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHN-NLSSLPHDLF 286

Query: 290 SSFTRLEELYM 300
           +    L EL++
Sbjct: 287 TPLRYLVELHL 297

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 56.3 bits (136), Expect = 4e-09
 Identities = 30/130 (23%), Positives = 52/130 (40%), Gaps = 6/130 (4%)

Query: 175 QLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPSSI-GLLANLQTLCLDQS 233
              +L++ +N      I  + F+ +  L V+ L R  +  +       LA+L TL L  +
Sbjct: 76  NTRYLNLMENNIQM--IQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN 133

Query: 234 MLGDIA--IIGKLKNLEILSFLNSDIVRLP-GELGQLTKLRLLDLTDCLQLKFIVPNVLS 290
            L  I       L  L  L   N+ I  +P     ++  L  LDL +  +L++I      
Sbjct: 134 WLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFE 193

Query: 291 SFTRLEELYM 300
               L+ L +
Sbjct: 194 GLFNLKYLNL 203

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 57.4 bits (139), Expect = 9e-10
 Identities = 28/152 (18%), Positives = 62/152 (40%), Gaps = 11/152 (7%)

Query: 149 DALKKCSAISLLNSSIHEVSEEFECLQLEFLHISQNTFVEVNIPD-NIFKGMKTLRVIDL 207
            AL     I+   S++ +   + +   +  L           +      + +  L  ++L
Sbjct: 16  PALANAIKIAAGKSNVTDTVTQADLDGITTLSAFGT-----GVTTIEGVQYLNNLIGLEL 70

Query: 208 TRMRLFSLPSSIGLLANLQTLCLDQSMLGDIAIIGKLKNLEILSFLNSDIVRLPGELGQL 267
              ++  L + +  L  +  L L  + L +++ I  L++++ L   ++ I  +   L  L
Sbjct: 71  KDNQITDL-APLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTP-LAGL 128

Query: 268 TKLRLLDLTDCLQLKFIVPNVLSSFTRLEELY 299
           + L++L L    Q+  I P  L+  T L+ L 
Sbjct: 129 SNLQVLYLDLN-QITNISP--LAGLTNLQYLS 157

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 49.3 bits (118), Expect = 4e-07
 Identities = 28/149 (18%), Positives = 61/149 (40%), Gaps = 7/149 (4%)

Query: 151 LKKCSAISLLNSSIHEVSEEFECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRM 210
           L+    + L ++ I +V+       L+ L++  N     NI      G+  L+ + +   
Sbjct: 106 LQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQIT--NISP--LAGLTNLQYLSIGNA 161

Query: 211 RLFSLPSSIGLLANLQTLCLDQSMLGDIAIIGKLKNLEILSFLNSDIVRLPGELGQLTKL 270
           ++  L + +  L+ L TL  D + + DI+ +  L NL  +   N+ I  +   L   + L
Sbjct: 162 QVSDL-TPLANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQISDVSP-LANTSNL 219

Query: 271 RLLDLTDCLQLKFIVPNVLSSFTRLEELY 299
            ++ LT+   +        ++      + 
Sbjct: 220 FIVTLTNQ-TITNQPVFYNNNLVVPNVVK 247

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 57.8 bits (140), Expect = 1e-09
 Identities = 27/130 (20%), Positives = 51/130 (39%), Gaps = 7/130 (5%)

Query: 176 LEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPSSI-GLLANLQTLCLDQSM 234
           ++ L +S N      I     +    L+V+ L   R+ ++       L +L+ L L  + 
Sbjct: 28  MKSLDLSFNKITY--IGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNH 85

Query: 235 LGDIA--IIGKLKNLEILSFLNSDIVRLP--GELGQLTKLRLLDLTDCLQLKFIVPNVLS 290
           L  ++    G L +L+ L+ + +    L        LT L+ L + +      I     +
Sbjct: 86  LSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFA 145

Query: 291 SFTRLEELYM 300
             T L EL +
Sbjct: 146 GLTSLNELEI 155

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 56.3 bits (136), Expect = 3e-09
 Identities = 23/138 (16%), Positives = 54/138 (39%), Gaps = 13/138 (9%)

Query: 172 ECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPSSIG-LLANLQTLCL 230
           E + +  LHI Q           ++  ++ ++ I +   ++F +P S    L +L+ L L
Sbjct: 284 ETVTIRRLHIPQFYLFY--DLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDL 341

Query: 231 DQSMLGDIAI-----IGKLKNLEILSFLN---SDIVRLPGELGQLTKLRLLDLTDCLQLK 282
            ++++ +  +      G   +L+ L         + +    L  L  L  LD++      
Sbjct: 342 SENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRN-TFH 400

Query: 283 FIVPNVLSSFTRLEELYM 300
            + P+      ++  L +
Sbjct: 401 PM-PDSCQWPEKMRFLNL 417

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 56.3 bits (136), Expect = 4e-09
 Identities = 28/140 (20%), Positives = 63/140 (45%), Gaps = 10/140 (7%)

Query: 162 SSIHEVSEEFECL-QLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPSSIG 220
            S+ +  E    L  L  L IS+NTF    +PD+  +  + +R ++L+   +  + +   
Sbjct: 374 RSMQKTGEILLTLKNLTSLDISRNTFHP--MPDS-CQWPEKMRFLNLSSTGIRVVKT--C 428

Query: 221 LLANLQTLCLDQSMLGDIAIIGKLKNLEILSFLNSDIVRLPGELGQLTKLRLLDLTDCLQ 280
           +   L+ L +  + L   ++   L  L+ L    + +  LP +      L ++ ++   Q
Sbjct: 429 IPQTLEVLDVSNNNLDSFSLF--LPRLQELYISRNKLKTLP-DASLFPVLLVMKISRN-Q 484

Query: 281 LKFIVPNVLSSFTRLEELYM 300
           LK +   +    T L+++++
Sbjct: 485 LKSVPDGIFDRLTSLQKIWL 504

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 44.7 bits (106), Expect = 2e-05
 Identities = 26/142 (18%), Positives = 60/142 (42%), Gaps = 16/142 (11%)

Query: 151 LKKCSAISLLNSSIHEVSEEFECLQ-LEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTR 209
           LK  +++ +  ++ H + +  +  + + FL++S        +   I +   TL V+D++ 
Sbjct: 386 LKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRV--VKTCIPQ---TLEVLDVSN 440

Query: 210 MRLFSLPSSIGLLANLQTLCLDQSMLGDIAIIGKLKNLEILSFLNSDIVRLP-GELGQLT 268
             L S       L  LQ L + ++ L  +        L ++    + +  +P G   +LT
Sbjct: 441 NNLDSFSLF---LPRLQELYISRNKLKTLPDASLFPVLLVMKISRNQLKSVPDGIFDRLT 497

Query: 269 KLRLLDLT------DCLQLKFI 284
            L+ + L        C ++ ++
Sbjct: 498 SLQKIWLHTNPWDCSCPRIDYL 519

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 40.9 bits (96), Expect = 3e-04
 Identities = 17/129 (13%), Positives = 44/129 (34%), Gaps = 4/129 (3%)

Query: 175 QLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPS-SIGLLANLQTLCLDQS 233
            L+ L I         I    F G+ +L  +++  + L +  S S+  + ++  L L  S
Sbjct: 124 NLQTLRIGNVETFSE-IRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLS 182

Query: 234 MLGDI--AIIGKLKNLEILSFLNSDIVRLPGELGQLTKLRLLDLTDCLQLKFIVPNVLSS 291
               +       L ++  L   ++++ R       + ++         +   +     + 
Sbjct: 183 ESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNE 242

Query: 292 FTRLEELYM 300
             +L    +
Sbjct: 243 LLKLLRYIL 251

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 56.7 bits (137), Expect = 2e-09
 Identities = 25/111 (22%), Positives = 48/111 (43%), Gaps = 5/111 (4%)

Query: 191 IPDNIFKGMKTLRVIDLTRMRLFSLPSSI-GLLANLQTLCLDQSMLGDIAIIGKLKNLEI 249
           +P ++ K      ++ L+   L++   +       L  L LD++ L  + + G L  L  
Sbjct: 25  LPPDLPK---DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGT 81

Query: 250 LSFLNSDIVRLPGELGQLTKLRLLDLTDCLQLKFIVPNVLSSFTRLEELYM 300
           L   ++ +  LP     L  L +LD++   +L  +    L     L+ELY+
Sbjct: 82  LDLSHNQLQSLPLLGQTLPALTVLDVSFN-RLTSLPLGALRGLGELQELYL 131

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 53.2 bits (128), Expect = 3e-08
 Identities = 28/129 (21%), Positives = 53/129 (41%), Gaps = 8/129 (6%)

Query: 175 QLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPSSIGLLANLQTLCLDQSM 234
           +L  L++ +    ++ +       +  L  +DL+  +L SLP     L  L  L +  + 
Sbjct: 56  RLTQLNLDRAELTKLQV----DGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNR 111

Query: 235 LGDIA--IIGKLKNLEILSFLNSDIVRLP-GELGQLTKLRLLDLTDCLQLKFIVPNVLSS 291
           L  +    +  L  L+ L    +++  LP G L    KL  L L +   L  +   +L+ 
Sbjct: 112 LTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN-NLTELPAGLLNG 170

Query: 292 FTRLEELYM 300
              L+ L +
Sbjct: 171 LENLDTLLL 179

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 52.4 bits (126), Expect = 5e-08
 Identities = 33/127 (25%), Positives = 52/127 (40%), Gaps = 6/127 (4%)

Query: 176 LEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPSSIGLLANLQTLCLDQSML 235
              LH+S+N                 L  ++L R  L  L     L   L TL L  + L
Sbjct: 33  TTILHLSENLLY--TFSLATLMPYTRLTQLNLDRAELTKLQVDGTL-PVLGTLDLSHNQL 89

Query: 236 GDI-AIIGKLKNLEILSFLNSDIVRLP-GELGQLTKLRLLDLTDCLQLKFIVPNVLSSFT 293
             +  +   L  L +L    + +  LP G L  L +L+ L L    +LK + P +L+   
Sbjct: 90  QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN-ELKTLPPGLLTPTP 148

Query: 294 RLEELYM 300
           +LE+L +
Sbjct: 149 KLEKLSL 155

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 39.3 bits (92), Expect = 8e-04
 Identities = 26/141 (18%), Positives = 53/141 (37%), Gaps = 10/141 (7%)

Query: 146 PDEDALKKCSAISLLNSSIHEVSEEFECL-QLEFLHISQNTFVEVNIPDNIFKGMKTLRV 204
             +  L     + L ++ +  +    + L  L  L +S N     ++P    +G+  L+ 
Sbjct: 71  QVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLT--SLPLGALRGLGELQE 128

Query: 205 IDLTRMRLFSLPSSI-GLLANLQTLCLDQSMLGDI--AIIGKLKNLEILSFLNSDIVRLP 261
           + L    L +LP  +      L+ L L  + L ++   ++  L+NL+ L    + +  +P
Sbjct: 129 LYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIP 188

Query: 262 GELGQLTKLRLLDLT----DC 278
                   L    L      C
Sbjct: 189 KGFFGSHLLPFAFLHGNPWLC 209

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 56.9 bits (137), Expect = 3e-09
 Identities = 29/158 (18%), Positives = 60/158 (37%), Gaps = 9/158 (5%)

Query: 147 DEDALKKCSAISLLNSSIHEVSEEFECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVID 206
                 + + + L ++++ + +       L  + +S N   +  I  + F  M+ L  + 
Sbjct: 227 RGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEK--IMYHPFVKMQRLERLY 284

Query: 207 LTRMRLFSLPSSIGLLANLQTLCLDQSMLGDI-AIIGKLKNLEILSFLNSDIVRLPGELG 265
           ++  RL +L      +  L+ L L  + L  +     +   LE L   ++ IV L   L 
Sbjct: 285 ISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLK--LS 342

Query: 266 QLTKLRLLDLTD----CLQLKFIVPNVLSSFTRLEELY 299
               L+ L L+     C  L+ +  NV        + +
Sbjct: 343 THHTLKNLTLSHNDWDCNSLRALFRNVARPAVDDADQH 380

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 56.1 bits (135), Expect = 4e-09
 Identities = 30/156 (19%), Positives = 56/156 (35%), Gaps = 13/156 (8%)

Query: 147 DEDALKKCSAISLLNSSIHEVSEEFECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVID 206
           D   +      ++  + +  ++     + +E L  S N+     +   +   +  L    
Sbjct: 187 DLSLIPSLFHANVSYNLLSTLAIP---IAVEELDASHNSINV--VRGPVNVELTIL---K 238

Query: 207 LTRMRLFSLPSSIGLLANLQTLCLDQSMLGDIA--IIGKLKNLEILSFLNSDIVRLPGEL 264
           L    L      +     L  + L  + L  I      K++ LE L   N+ +V L    
Sbjct: 239 LQHNNLTDTAWLLNY-PGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYG 297

Query: 265 GQLTKLRLLDLTDCLQLKFIVPNVLSSFTRLEELYM 300
             +  L++LDL+    L  +       F RLE LY+
Sbjct: 298 QPIPTLKVLDLSHN-HLLHV-ERNQPQFDRLENLYL 331

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 53.4 bits (128), Expect = 4e-08
 Identities = 30/144 (20%), Positives = 59/144 (40%), Gaps = 24/144 (16%)

Query: 175 QLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPSSIGLLANLQTLCLDQSM 234
           +L  L +S N      I D+ F+   +L+ + L+  RL  +   + L+ +L    +  ++
Sbjct: 148 KLTTLSMSNNNLER--IEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNL 203

Query: 235 LGDIAIIGKLK------------------NLEILSFLNSDIVRLPGELGQLTKLRLLDLT 276
           L  +AI   ++                   L IL   ++++      L     L  +DL+
Sbjct: 204 LSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAW-LLNYPGLVEVDLS 262

Query: 277 DCLQLKFIVPNVLSSFTRLEELYM 300
              +L+ I+ +      RLE LY+
Sbjct: 263 YN-ELEKIMYHPFVKMQRLERLYI 285

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 52.6 bits (126), Expect = 6e-08
 Identities = 29/156 (18%), Positives = 65/156 (41%), Gaps = 9/156 (5%)

Query: 146 PDEDALKKCSAISLLNSSIHEVSEE-FECL-QLEFLHISQNTFVEVNIPDNIFKGMKTLR 203
            ++  L     ++  NS++ ++     +   Q+E L+++     E  I    F    T++
Sbjct: 45  FEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEE--IDTYAFAYAHTIQ 102

Query: 204 VIDLTRMRLFSLPSSIGL-LANLQTLCLDQSMLGDIA--IIGKLKNLEILSFLNSDIVRL 260
            + +    +  LP  +   +  L  L L+++ L  +   I      L  LS  N+++ R+
Sbjct: 103 KLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERI 162

Query: 261 PGELGQ-LTKLRLLDLTDCLQLKFIVPNVLSSFTRL 295
             +  Q  T L+ L L+   +L  +  +++ S    
Sbjct: 163 EDDTFQATTSLQNLQLSSN-RLTHVDLSLIPSLFHA 197

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 51.5 bits (123), Expect = 1e-07
 Identities = 20/127 (15%), Positives = 41/127 (32%), Gaps = 12/127 (9%)

Query: 175 QLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPSSI-GLLANLQTLCLDQS 233
            L  L + +N      +P  IF     L  + ++   L  +         +LQ L L  +
Sbjct: 124 LLTVLVLERNDLSS--LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN 181

Query: 234 MLGDIAIIGKLKNLEILSFLNSDIVRLPGELGQLTKLRLLDLTDCLQLKFIVPNVLSSFT 293
            L  +  +  + +L   +   + +  L         +  LD +    +  +   V     
Sbjct: 182 RLTHVD-LSLIPSLFHANVSYNLLSTLAI----PIAVEELDASHN-SINVVRGPV---NV 232

Query: 294 RLEELYM 300
            L  L +
Sbjct: 233 ELTILKL 239

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 56.3 bits (136), Expect = 3e-09
 Identities = 28/133 (21%), Positives = 54/133 (40%), Gaps = 7/133 (5%)

Query: 172 ECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPSSI-GLLANLQTLCL 230
           E   ++   +S++      +  ++F     L  + L +  +  +  +    L +L  L L
Sbjct: 273 EASGVKTCDLSKSKIFA--LLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNL 330

Query: 231 DQSMLGDI--AIIGKLKNLEILSFLNSDIVRLP-GELGQLTKLRLLDLTDCLQLKFIVPN 287
            Q+ LG I   +   L  LE+L    + I  L       L  L+ L L    QLK +   
Sbjct: 331 SQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTN-QLKSVPDG 389

Query: 288 VLSSFTRLEELYM 300
           +    T L+++++
Sbjct: 390 IFDRLTSLQKIWL 402

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 46.7 bits (111), Expect = 5e-06
 Identities = 28/106 (26%), Positives = 43/106 (40%), Gaps = 6/106 (5%)

Query: 201 TLRVIDLTRMRLFSLPS-SIGLLANLQTLCLDQSMLGDIAIIG---KLKNLEILSFLNSD 256
            +  +DL+   +  L   S   L +LQ L ++Q   G +        L +L IL    + 
Sbjct: 31  HVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ 90

Query: 257 IVRLP-GELGQLTKLRLLDLTDC-LQLKFIVPNVLSSFTRLEELYM 300
            ++L  G    L  L +L LT C L    +  N     T LE L +
Sbjct: 91  FLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVL 136

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 54.6 bits (132), Expect = 7e-09
 Identities = 31/131 (23%), Positives = 56/131 (42%), Gaps = 8/131 (6%)

Query: 175 QLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPSSI-GLLANLQTLCLDQS 233
           +L+ L +S+       I D  ++ +  L  + LT   + SL       L++LQ L   ++
Sbjct: 53  ELQVLDLSRCEIQ--TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET 110

Query: 234 MLGDIA--IIGKLKNLEILSFLNSDIVRLP--GELGQLTKLRLLDLTDCLQLKFIVPNVL 289
            L  +    IG LK L+ L+  ++ I           LT L  LDL+   +++ I    L
Sbjct: 111 NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN-KIQSIYCTDL 169

Query: 290 SSFTRLEELYM 300
               ++  L +
Sbjct: 170 RVLHQMPLLNL 180

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 50.0 bits (120), Expect = 2e-07
 Identities = 32/134 (23%), Positives = 58/134 (43%), Gaps = 11/134 (8%)

Query: 175 QLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPSSI-GLLANLQTLCLDQS 233
            L  L ++ N     ++    F G+ +L+ +      L SL +   G L  L+ L +  +
Sbjct: 77  HLSTLILTGNPIQ--SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN 134

Query: 234 MLGDIAIIG---KLKNLEILSFLNSDIVRLP-GELGQLTKLRLLDLTDCL---QLKFIVP 286
           ++    +      L NLE L   ++ I  +   +L  L ++ LL+L+  L    + FI P
Sbjct: 135 LIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQP 194

Query: 287 NVLSSFTRLEELYM 300
                  RL+EL +
Sbjct: 195 GAFKE-IRLKELAL 207

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 49.2 bits (118), Expect = 4e-07
 Identities = 28/115 (24%), Positives = 54/115 (46%), Gaps = 4/115 (3%)

Query: 190 NIPDNIFKGMKTLRVIDLTRMRLFSLPSSI-GLLANLQTLCLDQSMLGDIA--IIGKLKN 246
           ++    F     L+V+DL+R  + ++       L++L TL L  + +  +A      L +
Sbjct: 42  HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS 101

Query: 247 LEILSFLNSDIVRLP-GELGQLTKLRLLDLTDCLQLKFIVPNVLSSFTRLEELYM 300
           L+ L  + +++  L    +G L  L+ L++   L   F +P   S+ T LE L +
Sbjct: 102 LQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDL 156

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 54.7 bits (132), Expect = 8e-09
 Identities = 30/146 (20%), Positives = 56/146 (38%), Gaps = 9/146 (6%)

Query: 155 SAISLLNSSIHEVSEEFECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFS 214
           S    + + I ++  +    +    ++ + +  +          + ++  I      + S
Sbjct: 5   SETITVPTPIKQIFSDDAFAETIKDNLKKKSVTDAVT----QNELNSIDQIIANNSDIKS 60

Query: 215 LPSSIGLLANLQTLCLDQSMLGDIAIIGKLKNLEILSFLNSDIVRLPGELGQLTKLRLLD 274
           +   I  L N+  L L+ + L DI  +  LKNL  L    + +  L   L  L KL+ L 
Sbjct: 61  V-QGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLS 118

Query: 275 LTDCLQLKFIVPNVLSSFTRLEELYM 300
           L     +  I    L    +LE LY+
Sbjct: 119 LEHN-GISDING--LVHLPQLESLYL 141

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 54.7 bits (132), Expect = 8e-09
 Identities = 33/153 (21%), Positives = 68/153 (44%), Gaps = 11/153 (7%)

Query: 149 DALKKCSAISLLNSSIHEVSEEFECLQLEFLHISQNTFVEVNIPD-NIFKGMKTLRVIDL 207
           DA  +    +L   S+ +   + E   ++ +  + +     +I      + +  +  + L
Sbjct: 21  DAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNS-----DIKSVQGIQYLPNVTKLFL 75

Query: 208 TRMRLFSLPSSIGLLANLQTLCLDQSMLGDIAIIGKLKNLEILSFLNSDIVRLPGELGQL 267
              +L  +   +  L NL  L LD++ + D++ +  LK L+ LS  ++ I  + G L  L
Sbjct: 76  NGNKLTDI-KPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDING-LVHL 133

Query: 268 TKLRLLDLTDCLQLKFIVPNVLSSFTRLEELYM 300
            +L  L L +  ++  I    LS  T+L+ L +
Sbjct: 134 PQLESLYLGNN-KITDITV--LSRLTKLDTLSL 163

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 47.7 bits (114), Expect = 1e-06
 Identities = 31/153 (20%), Positives = 67/153 (43%), Gaps = 11/153 (7%)

Query: 149 DALKKCSAISLLNSSIHEVSEEFECLQLEFLHISQNTFVEVNIPD-NIFKGMKTLRVIDL 207
             L   + + L  + + ++        L +L + +N      + D +  K +K L+ + L
Sbjct: 65  QYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDEN-----KVKDLSSLKDLKKLKSLSL 119

Query: 208 TRMRLFSLPSSIGLLANLQTLCLDQSMLGDIAIIGKLKNLEILSFLNSDIVRLPGELGQL 267
               +  + + +  L  L++L L  + + DI ++ +L  L+ LS  ++ I  +   L  L
Sbjct: 120 EHNGISDI-NGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP-LAGL 177

Query: 268 TKLRLLDLTDCLQLKFIVPNVLSSFTRLEELYM 300
           TKL+ L L+    +  +    L+    L+ L +
Sbjct: 178 TKLQNLYLSKN-HISDLRA--LAGLKNLDVLEL 207

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 54.6 bits (132), Expect = 1e-08
 Identities = 26/125 (20%), Positives = 47/125 (37%), Gaps = 12/125 (9%)

Query: 175 QLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPSSIGLLANLQTLCLDQSM 234
            LEF+    N   E  +P+   + +  L  I      L  LP       +L+++    ++
Sbjct: 174 SLEFIAAGNNQLEE--LPE--LQNLPFLTAIYADNNSLKKLPDLPL---SLESIVAGNNI 226

Query: 235 LGDIAIIGKLKNLEILSFLNSDIVRLPGELGQLTKLRLLDLTDCLQLKFIVPNVLSSFTR 294
           L ++  +  L  L  +   N+ +  LP     L  L + D      L  + P +  S T 
Sbjct: 227 LEELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRD----NYLTDL-PELPQSLTF 281

Query: 295 LEELY 299
           L+   
Sbjct: 282 LDVSE 286

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 51.5 bits (124), Expect = 1e-07
 Identities = 28/142 (19%), Positives = 51/142 (35%), Gaps = 17/142 (11%)

Query: 159 LLNSSIHEVSEEFECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPSS 218
           L N  +  + E      LE L  S N+  E  +P+     +K+L V +     L  LP  
Sbjct: 78  LNNLGLSSLPELPP--HLESLVASCNSLTE--LPELPQS-LKSLLVDNNNLKALSDLPP- 131

Query: 219 IGLLANLQTLCLDQSMLGDIAIIGKLKNLEILSFLNSDIVRLPGELGQLTKLRLLDLTDC 278
                 L+ L +  + L  +  +     L+I+   N+ + +LP     L  +   +    
Sbjct: 132 -----LLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGN---- 182

Query: 279 LQLKFIVPNVLSSFTRLEELYM 300
              +      L +   L  +Y 
Sbjct: 183 --NQLEELPELQNLPFLTAIYA 202

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 49.2 bits (118), Expect = 6e-07
 Identities = 27/127 (21%), Positives = 48/127 (37%), Gaps = 9/127 (7%)

Query: 149 DALKKCSAISLLNSSIHEVSEEFECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLT 208
           D       I+  N+ + E+ E      L  ++   N+  +  +PD        L  I   
Sbjct: 170 DLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKK--LPDLPLS----LESIVAG 223

Query: 209 RMRLFSLPSSIGLLANLQTLCLDQSMLGDIAIIGKLKNLEILSFLNSDIVRLPGELGQLT 268
              L  LP  +  L  L T+  D ++L  +       +LE L+  ++ +  LP     LT
Sbjct: 224 NNILEELPE-LQNLPFLTTIYADNNLLKTLP--DLPPSLEALNVRDNYLTDLPELPQSLT 280

Query: 269 KLRLLDL 275
            L + + 
Sbjct: 281 FLDVSEN 287

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 45.4 bits (108), Expect = 1e-05
 Identities = 19/128 (14%), Positives = 41/128 (32%), Gaps = 16/128 (12%)

Query: 172 ECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPSSIGLLANLQTLCLD 231
              +LE L  S N   E  +P+      + L+ + +    L   P     + +L+     
Sbjct: 335 LPPRLERLIASFNHLAE--VPELP----QNLKQLHVEYNPLREFPDIPESVEDLRMNSHL 388

Query: 232 QSMLGDIAIIGKLKNLEILSFLNSDIVRLPGELGQLTKLRLLDLTDCLQLKFIVPNVLSS 291
                   +    +NL+ L    + +   P     +  LR+       ++         +
Sbjct: 389 AE------VPELPQNLKQLHVETNPLREFPDIPESVEDLRMNS----ERVVDPYEFAHET 438

Query: 292 FTRLEELY 299
             +LE+  
Sbjct: 439 TDKLEDDV 446

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 43.4 bits (103), Expect = 5e-05
 Identities = 26/148 (17%), Positives = 58/148 (39%), Gaps = 18/148 (12%)

Query: 149 DALKKCSAISLLNSSIHEVSEEFECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLT 208
           D      A+++ ++ + ++ E  +   L FL +S+N F        + +    L  ++ +
Sbjct: 254 DLPPSLEALNVRDNYLTDLPELPQ--SLTFLDVSENIF------SGLSELPPNLYYLNAS 305

Query: 209 RMRLFSLPSSIGLLANLQTLCLDQSMLGDIAIIGKLKNLEILSFLNSDIVRLPGELGQLT 268
              + SL     L  +L+ L +  + L ++        LE L    + +  +P     L 
Sbjct: 306 SNEIRSLC---DLPPSLEELNVSNNKLIELP--ALPPRLERLIASFNHLAEVPELPQNLK 360

Query: 269 KLRLLDLTDCLQLKFIVPNVLSSFTRLE 296
           +L +    +   L+   P++  S   L 
Sbjct: 361 QLHV----EYNPLREF-PDIPESVEDLR 383

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 43.1 bits (102), Expect = 6e-05
 Identities = 25/139 (17%), Positives = 47/139 (33%), Gaps = 21/139 (15%)

Query: 149 DALKKCSAISLLNSSIHEVSEEFECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLT 208
           D      +I   N+ + E+ E      L  ++   N      +PD       +L  +++ 
Sbjct: 212 DLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKT--LPDLP----PSLEALNVR 265

Query: 209 RMRLFSLPSSIGLLANLQTLCLDQSMLGDI---------------AIIGKLKNLEILSFL 253
              L  LP     L  L       S L ++               ++     +LE L+  
Sbjct: 266 DNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVS 325

Query: 254 NSDIVRLPGELGQLTKLRL 272
           N+ ++ LP    +L +L  
Sbjct: 326 NNKLIELPALPPRLERLIA 344

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 54.0 bits (129), Expect = 2e-08
 Identities = 22/111 (19%), Positives = 46/111 (41%), Gaps = 6/111 (5%)

Query: 169 EEFECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPSSIGLLANLQTL 228
            + E   +  LH++      +   +     +  +  +DL+  RL +LP ++  L  L+ L
Sbjct: 436 LKMEYADVRVLHLAHKDLTVLCHLEQ----LLLVTHLDLSHNRLRALPPALAALRCLEVL 491

Query: 229 CLDQSMLGDIAIIGKLKNLEILSFLNSDIVRLPG--ELGQLTKLRLLDLTD 277
               + L ++  +  L  L+ L   N+ + +      L    +L LL+L  
Sbjct: 492 QASDNALENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQG 542

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 43.2 bits (101), Expect = 6e-05
 Identities = 19/91 (20%), Positives = 38/91 (41%), Gaps = 3/91 (3%)

Query: 210 MRLFSLPSSIGLLANLQTLCLDQSMLGDIAIIGKLKNLEILSFLNSDIVRLPGELGQLTK 269
             L          A+++ L L    L  +  + +L  +  L   ++ +  LP  L  L  
Sbjct: 428 KFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRC 487

Query: 270 LRLLDLTDCLQLKFIVPNVLSSFTRLEELYM 300
           L +L  +D   L+ +    +++  RL+EL +
Sbjct: 488 LEVLQASDN-ALENVDG--VANLPRLQELLL 515

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 51.8 bits (124), Expect = 1e-07
 Identities = 26/136 (19%), Positives = 46/136 (33%), Gaps = 26/136 (19%)

Query: 175 QLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPSSIGLLANLQTLCLDQSM 234
            +  L I  N      +P    +    LR ++++  +L SLP     L  L       + 
Sbjct: 62  HITTLVIPDNNLTS--LPALPPE----LRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTH 115

Query: 235 LGDI---------------AIIGKLKNLEILSFLNSDIVRLPGELGQLTKLRLLDLTDCL 279
           L  +               ++      L+ LS  ++ +  LP    +L KL   +     
Sbjct: 116 LPALPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLASLPALPSELCKLWAYN----N 171

Query: 280 QLKFIVPNVLSSFTRL 295
           QL  + P + S    L
Sbjct: 172 QLTSL-PMLPSGLQEL 186

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 49.9 bits (119), Expect = 5e-07
 Identities = 26/140 (18%), Positives = 47/140 (33%), Gaps = 16/140 (11%)

Query: 158 SLLNSSIHEVSEEFECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPS 217
           S+ ++ +  +       +L  L    N      +P         L+ + ++  RL SLP 
Sbjct: 187 SVSDNQLASLPTLPS--ELYKLWAYNNRLTS--LPALP----SGLKELIVSGNRLTSLPV 238

Query: 218 SIGLLANLQTLCLDQSMLGDI-AIIGKLKNLEILSFLNSDIVRLPGELGQLTKLRLLDLT 276
                  L+ L +  + L  +  +      L  LS   + + RLP  L  L+    ++L 
Sbjct: 239 LPS---ELKELMVSGNRLTSLPMLPS---GLLSLSVYRNQLTRLPESLIHLSSETTVNLE 292

Query: 277 DCLQLKFIVPNVLSSFTRLE 296
               L       L   T   
Sbjct: 293 GN-PLSERTLQALREITSAP 311

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 48.4 bits (115), Expect = 1e-06
 Identities = 28/171 (16%), Positives = 54/171 (31%), Gaps = 39/171 (22%)

Query: 149 DALKKCSAISLLNSSIHEVSEEFECLQ-LEFLHISQNTFVEVNIPDNIFKGMKTLRVIDL 207
               +   + +  + +  +      L  L              +P         L  + +
Sbjct: 78  ALPPELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTHLPA--LPSG-------LCKLWI 128

Query: 208 TRMRLFSLPSSIGLLANLQTLCLDQSMLGDI-AIIGKLK-----------------NLEI 249
              +L SLP        LQ L +  + L  + A+  +L                   L+ 
Sbjct: 129 FGNQLTSLPVLPP---GLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPMLPSGLQE 185

Query: 250 LSFLNSDIVRLPGELGQLTKLRLLDLTDCLQLKFIVPNVLSSFTRLEELYM 300
           LS  ++ +  LP    +L KL   +     +L  + P + S    L+EL +
Sbjct: 186 LSVSDNQLASLPTLPSELYKLWAYN----NRLTSL-PALPSG---LKELIV 228

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 47.6 bits (113), Expect = 3e-06
 Identities = 16/75 (21%), Positives = 34/75 (45%), Gaps = 6/75 (8%)

Query: 202 LRVIDLTRMRLFSLPSSIGLLANLQTLCLDQSMLGDI-AIIGKLKNLEILSFLNSDIVRL 260
             V+++    L +LP  +   A++ TL +  + L  + A+  +L+ LE+     + +  L
Sbjct: 42  NAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPALPPELRTLEVS---GNQLTSL 96

Query: 261 PGELGQLTKLRLLDL 275
           P     L +L +   
Sbjct: 97  PVLPPGLLELSIFSN 111

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 50.6 bits (121), Expect = 2e-07
 Identities = 32/132 (24%), Positives = 50/132 (37%), Gaps = 10/132 (7%)

Query: 175 QLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPSSI-GLLANLQTLCLDQS 233
            L  L +S N      I    F  +  LR +DL+   L +L   +   L  L+ L L  +
Sbjct: 65  NLHSLLLSHNHLNF--ISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNN 122

Query: 234 MLGDIA--IIGKLKNLEILSFLNSDIVRLPGE----LGQLTKLRLLDLTDCLQLKFIVPN 287
            +  +       +  L+ L    + I R P E      +L KL LLDL+   +LK +   
Sbjct: 123 HIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSN-KLKKLPLT 181

Query: 288 VLSSFTRLEELY 299
            L       +  
Sbjct: 182 DLQKLPAWVKNG 193

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 49.1 bits (117), Expect = 6e-07
 Identities = 25/115 (21%), Positives = 44/115 (38%), Gaps = 9/115 (7%)

Query: 191 IPDNIFKGMKTLRVIDLTRMRLFSLPSSIGL--LANLQTLCLDQSMLGDIA--IIGKLKN 246
           +P ++      L   DL+   L  L +      L NL +L L  + L  I+      + N
Sbjct: 33  VPQSLPSYTALL---DLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPN 89

Query: 247 LEILSFLNSDIVRLP-GELGQLTKLRLLDLTDCLQLKFIVPNVLSSFTRLEELYM 300
           L  L   ++ +  L       L  L +L L     +  +  N      +L++LY+
Sbjct: 90  LRYLDLSSNHLHTLDEFLFSDLQALEVLLL-YNNHIVVVDRNAFEDMAQLQKLYL 143

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 42.5 bits (100), Expect = 1e-04
 Identities = 20/99 (20%), Positives = 38/99 (38%), Gaps = 7/99 (7%)

Query: 206 DLTRMRLFSLPSSIGLLANLQTLCLDQSMLGDI---AIIGKLKNLEILSFLNSDIVRLP- 261
             ++ +L ++P    L +    L L  + L  +       +L NL  L   ++ +  +  
Sbjct: 24  SCSKQQLPNVPQ--SLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISS 81

Query: 262 GELGQLTKLRLLDLTDCLQLKFIVPNVLSSFTRLEELYM 300
                +  LR LDL+    L  +   + S    LE L +
Sbjct: 82  EAFVPVPNLRYLDLSSN-HLHTLDEFLFSDLQALEVLLL 119

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 51.0 bits (122), Expect = 2e-07
 Identities = 26/131 (19%), Positives = 55/131 (41%), Gaps = 12/131 (9%)

Query: 174 LQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPSSI-GLLANLQTLCLDQ 232
             +  L +S       ++   +F+ +K L+V++L   ++  +       L NLQ L L  
Sbjct: 266 SSVRHLDLSHGFVF--SLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSY 323

Query: 233 SMLGDI--AIIGKLKNLEILSFLNSDIVRLPGE-LGQLTKLRLLDLTDCLQLKFIVPNVL 289
           ++LG++  +    L  +  +    + I  +  +    L KL+ LDL D   L  I     
Sbjct: 324 NLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDN-ALTTI----- 377

Query: 290 SSFTRLEELYM 300
                + ++++
Sbjct: 378 HFIPSIPDIFL 388

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 49.0 bits (117), Expect = 9e-07
 Identities = 34/170 (20%), Positives = 63/170 (37%), Gaps = 27/170 (15%)

Query: 157 ISLLNSSIHEVSEE-FECLQ-LEFLHISQNTFVEVNIPDN-------------IFKGMKT 201
           I L  + I  + ++ F+ L+ L+ L +  N    ++   +             + K   T
Sbjct: 343 IDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLT 402

Query: 202 LRVIDLTRMRLFSLP--SSIGLLANLQTLCLDQSMLGDI---AIIGKLKNLEILSFLNSD 256
             +I L+  RL +L     +  + +LQ L L+Q+            +  +LE L    + 
Sbjct: 403 ANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENM 462

Query: 257 IVRL------PGELGQLTKLRLLDLTDCLQLKFIVPNVLSSFTRLEELYM 300
           +               L+ L++L L     L  + P V S  T L  L +
Sbjct: 463 LQLAWETELCWDVFEGLSHLQVLYLNHN-YLNSLPPGVFSHLTALRGLSL 511

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 49.0 bits (117), Expect = 1e-06
 Identities = 33/167 (19%), Positives = 68/167 (40%), Gaps = 26/167 (15%)

Query: 157 ISLLNSSIHEVSEE-FECLQ-LEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFS 214
           ++L  + I+++++E F  L  L+ L++S N   E  +  + F G+  +  IDL +  +  
Sbjct: 295 LNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGE--LYSSNFYGLPKVAYIDLQKNHIAI 352

Query: 215 LPSSI-GLLANLQTLCLDQSMLGDIAIIGKLKNL-----------------EILSFLNSD 256
           +       L  LQTL L  + L  I  I  + ++                  ++    + 
Sbjct: 353 IQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENR 412

Query: 257 IVRLPGE--LGQLTKLRLLDLTDCLQLKFIVPNVL-SSFTRLEELYM 300
           +  L     L ++  L++L L    +      +   S    LE+L++
Sbjct: 413 LENLDILYFLLRVPHLQILILNQN-RFSSCSGDQTPSENPSLEQLFL 458

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 45.2 bits (107), Expect = 2e-05
 Identities = 23/127 (18%), Positives = 40/127 (31%), Gaps = 21/127 (16%)

Query: 175 QLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPSSI-GLLANLQTLCLDQS 233
           QL+ L +    +  + I    F+ +  LR++DL   +++ L       L +L  L L   
Sbjct: 49  QLQLLELGSQ-YTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFC 107

Query: 234 MLGDIAIIGKLKNLEILSFLNSDIVRLPGELGQLTKLRLLDLTDCLQLKFIVPNVLSSFT 293
            L D  +                     G    L  L  LDL+        +        
Sbjct: 108 GLSDAVLK-------------------DGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLN 148

Query: 294 RLEELYM 300
            L+ +  
Sbjct: 149 SLKSIDF 155

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 42.1 bits (99), Expect = 1e-04
 Identities = 25/112 (22%), Positives = 39/112 (34%), Gaps = 6/112 (5%)

Query: 195 IFKGMKTLRVIDLTRMRLFSLPSSI-GLLANLQTLCLD---QSMLGDIAIIGKLKNLEIL 250
           + + + T   + L+   + ++ +S    L  LQ L L      +  D      L NL IL
Sbjct: 19  VPQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRIL 78

Query: 251 SFLNSDIVRLP-GELGQLTKLRLLDLTDC-LQLKFIVPNVLSSFTRLEELYM 300
              +S I  L       L  L  L L  C L    +      +   L  L +
Sbjct: 79  DLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDL 130

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 42.1 bits (99), Expect = 2e-04
 Identities = 28/163 (17%), Positives = 63/163 (38%), Gaps = 15/163 (9%)

Query: 151 LKKCSAISLLNSSIHEVSEE-FECLQ-LEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLT 208
           L     + L +S I+ +  + F+ L  L  L +      +  + D  F+ +K L  +DL+
Sbjct: 72  LPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLS 131

Query: 209 RMRLFSLP--SSIGLLANLQTLCLDQSMLGDIAIIG----KLKNLEILSFLNSDIVRLP- 261
           + ++ SL    S G L +L+++    + +  +        + K L   S   + +     
Sbjct: 132 KNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVS 191

Query: 262 ------GELGQLTKLRLLDLTDCLQLKFIVPNVLSSFTRLEEL 298
                     +   L +LD++       I  N  ++ ++ +  
Sbjct: 192 VDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAF 234

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 39.8 bits (93), Expect = 8e-04
 Identities = 29/128 (22%), Positives = 52/128 (40%), Gaps = 9/128 (7%)

Query: 157 ISLLNSSIHEVSEEFEC---LQLEFLHISQNTFVEVN---IPDNIFKGMKTLRVIDLTRM 210
           + L  +     S +        LE L + +N         +  ++F+G+  L+V+ L   
Sbjct: 431 LILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHN 490

Query: 211 RLFSLPSSI-GLLANLQTLCLDQSMLGDIAIIGKLKNLEILSFLNSDIVRLPGELGQLTK 269
            L SLP  +   L  L+ L L+ + L  ++      NLEIL    + ++           
Sbjct: 491 YLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPANLEILDISRNQLLAPN--PDVFVS 548

Query: 270 LRLLDLTD 277
           L +LD+T 
Sbjct: 549 LSVLDITH 556

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 49.6 bits (119), Expect = 4e-07
 Identities = 33/115 (28%), Positives = 54/115 (46%), Gaps = 5/115 (4%)

Query: 190 NIPDNIFKGMKTLRVIDLTRMRLFSLPSSI-GLLANLQTLCLDQSMLGDI--AIIGKLKN 246
           ++P   F  +  LR++ L   +L +LP+ I   L NL+TL +  + L  +   +  +L N
Sbjct: 51  SLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVN 110

Query: 247 LEILSFLNSDIVRLP-GELGQLTKLRLLDLTDCLQLKFIVPNVLSSFTRLEELYM 300
           L  L    + +  LP      LTKL  L L    +L+ +   V    T L+EL +
Sbjct: 111 LAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYN-ELQSLPKGVFDKLTSLKELRL 164

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 49.2 bits (118), Expect = 4e-07
 Identities = 38/130 (29%), Positives = 62/130 (47%), Gaps = 7/130 (5%)

Query: 175 QLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPSSI-GLLANLQTLCLDQS 233
           +L  L+++ N      +P  IFK +K L  + +T  +L +LP  +   L NL  L LD++
Sbjct: 62  KLRLLYLNDNKLQ--TLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRN 119

Query: 234 MLGDI--AIIGKLKNLEILSFLNSDIVRLP-GELGQLTKLRLLDLTDCLQLKFIVPNVLS 290
            L  +   +   L  L  LS   +++  LP G   +LT L+ L L +  QLK +      
Sbjct: 120 QLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNN-QLKRVPEGAFD 178

Query: 291 SFTRLEELYM 300
             T L+ L +
Sbjct: 179 KLTELKTLKL 188

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 49.9 bits (119), Expect = 5e-07
 Identities = 24/128 (18%), Positives = 60/128 (46%), Gaps = 3/128 (2%)

Query: 175 QLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPSSIGL--LANLQTLCLDQ 232
           +LE L +  N   E++    +   MK+L+ +D+++  +             +L +L +  
Sbjct: 349 ELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSS 408

Query: 233 SMLGDIAIIGKLKNLEILSFLNSDIVRLPGELGQLTKLRLLDLTDCLQLKFIVPNVLSSF 292
           ++L D         +++L   ++ I  +P ++ +L  L+ L++    QLK +   +    
Sbjct: 409 NILTDTIFRCLPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASN-QLKSVPDGIFDRL 467

Query: 293 TRLEELYM 300
           T L+++++
Sbjct: 468 TSLQKIWL 475

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 45.6 bits (108), Expect = 1e-05
 Identities = 22/145 (15%), Positives = 41/145 (28%), Gaps = 24/145 (16%)

Query: 157 ISLLNSSIHEVSEEFECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLP 216
             +       + E F  + ++   +S        +       +     +D +   L    
Sbjct: 285 SDVFGFPQSYIYEIFSNMNIKNFTVSGTRM----VHMLCPSKISPFLHLDFSNNLLTDTV 340

Query: 217 SSI-GLLANLQTLCLDQSMLGDIAIIGKLKNLEILSFLNSDIVRLPGELGQLTKLRLLDL 275
               G L  L+TL L  +         +LK L           ++     Q+  L+ LD+
Sbjct: 341 FENCGHLTELETLILQMN---------QLKELS----------KIAEMTTQMKSLQQLDI 381

Query: 276 TDCLQLKFIVPNVLSSFTRLEELYM 300
           +             S    L  L M
Sbjct: 382 SQNSVSYDEKKGDCSWTKSLLSLNM 406

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 44.9 bits (106), Expect = 2e-05
 Identities = 24/126 (19%), Positives = 44/126 (34%), Gaps = 8/126 (6%)

Query: 175 QLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPSSIGLLANLQTLCLDQ-- 232
           +L  L IS N      +  ++FK  + L  +DL+  +L  +        NL+ L L    
Sbjct: 46  KLRILIISHNRIQY--LDISVFKFNQELEYLDLSHNKLVKISC--HPTVNLKHLDLSFNA 101

Query: 233 -SMLGDIAIIGKLKNLEILSFLNSDIVRLP-GELGQLTKLRLLDLTDCLQLKFIVPNVLS 290
              L      G +  L+ L    + + +     +  L   ++L +      +   P  L 
Sbjct: 102 FDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQ 161

Query: 291 SFTRLE 296
            F    
Sbjct: 162 DFNTES 167

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 43.7 bits (103), Expect = 4e-05
 Identities = 28/126 (22%), Positives = 52/126 (41%), Gaps = 7/126 (5%)

Query: 176 LEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPSSI-GLLANLQTLCLDQSM 234
              L+ISQN   E  +  +    +  LR++ ++  R+  L  S+      L+ L L  + 
Sbjct: 23  TTILNISQNYISE--LWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK 80

Query: 235 LGDIAIIGKLKNLEILSFLNSDIVRLP--GELGQLTKLRLLDLTDCLQLKFIVPNVLSSF 292
           L  I+      NL+ L    +    LP   E G +++L+ L L+    L+      ++  
Sbjct: 81  LVKIS-CHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTT-HLEKSSVLPIAHL 138

Query: 293 TRLEEL 298
              + L
Sbjct: 139 NISKVL 144

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 48.8 bits (116), Expect = 1e-06
 Identities = 28/157 (17%), Positives = 53/157 (33%), Gaps = 9/157 (5%)

Query: 151 LKKCSAISLLNSSIHEVSEEFECLQLEFLHISQNTFVEVNIPD--NIFKGMKTLRVIDLT 208
           +++ S        +HE+++      LE L+     F +++  D   I +  ++L  + + 
Sbjct: 171 MEESSFSEKDGKWLHELAQH--NTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVG 228

Query: 209 RMRLFSLPSSIGLLANLQTLCL-----DQSMLGDIAIIGKLKNLEILSFLNSDIVRLPGE 263
              +  L       ANL+  C      D  M      +   + L  L         +P  
Sbjct: 229 DFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPIL 288

Query: 264 LGQLTKLRLLDLTDCLQLKFIVPNVLSSFTRLEELYM 300
                ++R LDL   L        ++     LE L  
Sbjct: 289 FPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLET 325

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 47.7 bits (114), Expect = 1e-06
 Identities = 19/132 (14%), Positives = 39/132 (29%), Gaps = 8/132 (6%)

Query: 175 QLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLP--SSIGLLANLQTLCLDQ 232
           ++  + I     +   I  +  K +  L+ + +    L   P  + +        L +  
Sbjct: 81  KVTHIEIRNTRNL-TYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITD 139

Query: 233 ----SMLGDIAIIGKLKNLEILSFLNSDIVRLPGELGQLTKLRLLDLTDCLQLKFIVPNV 288
               + +   A  G       L   N+    + G     TKL  + L     L  I  + 
Sbjct: 140 NPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDA 199

Query: 289 LSS-FTRLEELY 299
               ++    L 
Sbjct: 200 FGGVYSGPSLLD 211

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 43.5 bits (103), Expect = 3e-05
 Identities = 22/133 (16%), Positives = 47/133 (35%), Gaps = 10/133 (7%)

Query: 176 LEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTR-MRLFSLPSSI-GLLANLQTLCLDQS 233
            + L + +       IP + F  +  +  I ++  + L  L S     L+ +  + +  +
Sbjct: 33  TQTLKLIETHLRT--IPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNT 90

Query: 234 -MLGDIA--IIGKLKNLEILSFLNSDIVRLPGE--LGQLTKLRLLDLTDCLQLKFIVPNV 288
             L  I    + +L  L+ L   N+ +   P    +       +L++TD   +  I  N 
Sbjct: 91  RNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNA 150

Query: 289 LSSFTR-LEELYM 300
                     L +
Sbjct: 151 FQGLCNETLTLKL 163

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 39.6 bits (93), Expect = 6e-04
 Identities = 21/103 (20%), Positives = 43/103 (41%), Gaps = 7/103 (6%)

Query: 202 LRVIDLTRMRLFSLPSSIGLLANLQTLCLDQSMLGDI--AIIGKLKNLEILS-FLNSDIV 258
                +T   +  +PS   L  + QTL L ++ L  I       L N+  +   ++  + 
Sbjct: 13  EEDFRVTCKDIQRIPS---LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQ 69

Query: 259 RLP-GELGQLTKLRLLDLTDCLQLKFIVPNVLSSFTRLEELYM 300
           +L       L+K+  +++ +   L +I P+ L     L+ L +
Sbjct: 70  QLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGI 112

>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A* Length = 549

 Score = 48.8 bits (116), Expect = 1e-06
 Identities = 15/140 (10%), Positives = 41/140 (29%), Gaps = 14/140 (10%)

Query: 1   ARALRNKSLHEWKNALRELQTPSVVNFEGVPAETYSSI----ELSFKYLKGEQLKKIFLL 56
            ++   K+  +      +L++  +V  E +   +Y S+    +   + L  E  +     
Sbjct: 337 FKSCEPKTFEKMAQLNNKLESRGLVGVECITPYSYKSLAMALQRCVEVLSDE-DRSALAF 395

Query: 57  CSLIGNSFWFT--DLFKYSMGLGIFQGVNRMVD-ARNKLYALVHELRDSCLLLEGDSSEQ 113
             ++                         ++ D   ++L      L     LL G     
Sbjct: 396 AVVMPPGVDIPVKLWSCVIPVDICSNEEEQLDDEVADRL----KRLSKRGALLSGKRMPV 451

Query: 114 --FSMHDVVYDVVVSIACRD 131
             F +  +++  +  +    
Sbjct: 452 LTFKIDHIIHMFLKHVVDAQ 471

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 47.7 bits (114), Expect = 2e-06
 Identities = 30/153 (19%), Positives = 63/153 (41%), Gaps = 12/153 (7%)

Query: 149 DALKKCSAISLLNSSIHEVSEEFECLQLEFLHISQNTFVEVNIPD-NIFKGMKTLRVIDL 207
             L      +L   S+ ++  + E   ++  +   +     NI      +    L+ + L
Sbjct: 16  PGLANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNS-----NIQSLAGMQFFTNLKELHL 70

Query: 208 TRMRLFSLPSSIGLLANLQTLCLDQSMLGDIAIIGKLKNLEILSFLNSDIVRLPGELGQL 267
           +  ++  L S +  L  L+ L ++++ L ++  I     L  L   N+++      L  L
Sbjct: 71  SHNQISDL-SPLKDLTKLEELSVNRNRLKNLNGIPSA-CLSRLFLDNNELRDTDS-LIHL 127

Query: 268 TKLRLLDLTDCLQLKFIVPNVLSSFTRLEELYM 300
             L +L + +  +LK IV   L   ++LE L +
Sbjct: 128 KNLEILSIRNN-KLKSIVM--LGFLSKLEVLDL 157

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 46.9 bits (112), Expect = 2e-06
 Identities = 24/141 (17%), Positives = 55/141 (39%), Gaps = 10/141 (7%)

Query: 151 LKKCSAISLLNSSIHEVSEEFECLQLEFLHISQNTFVEVNIPD-NIFKGMKTLRVIDLTR 209
           L K   +S+  + +  +        L  L +  N      + D +    +K L ++ +  
Sbjct: 84  LTKLEELSVNRNRLKNL-NGIPSACLSRLFLDNN-----ELRDTDSLIHLKNLEILSIRN 137

Query: 210 MRLFSLPSSIGLLANLQTLCLDQSMLGDIAIIGKLKNLEILSFLNSDIVRLPGELGQLTK 269
            +L S+   +G L+ L+ L L  + + +   + +LK +  +       V  P  +    +
Sbjct: 138 NKLKSI-VMLGFLSKLEVLDLHGNEITNTGGLTRLKKVNWIDLTGQKCVNEP--VKYQPE 194

Query: 270 LRLLDLTDCLQLKFIVPNVLS 290
           L + +       ++I P  +S
Sbjct: 195 LYITNTVKDPDGRWISPYYIS 215

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 45.0 bits (107), Expect = 9e-06
 Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 4/84 (4%)

Query: 217 SSIGLLANLQTLCLDQSMLGDIAIIGKLKNLEILSFLNSDIVRLPGELGQLTKLRLLDLT 276
                LAN     L +  + D+    +L  ++  +  NS+I  L G +   T L+ L L+
Sbjct: 13  FPDPGLANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLAG-MQFFTNLKELHLS 71

Query: 277 DCLQLKFIVPNVLSSFTRLEELYM 300
              Q+  + P  L   T+LEEL +
Sbjct: 72  HN-QISDLSP--LKDLTKLEELSV 92

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 45.0 bits (107), Expect = 1e-05
 Identities = 25/139 (17%), Positives = 53/139 (38%), Gaps = 10/139 (7%)

Query: 161 NSSIHEVSEEFECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPSSIG 220
            + I++V  +         ++ + +  ++       K +  ++  +     + SL + + 
Sbjct: 6   PTPINQVFPDPGLANAVKQNLGKQSVTDLVS----QKELSGVQNFNGDNSNIQSL-AGMQ 60

Query: 221 LLANLQTLCLDQSMLGDIAIIGKLKNLEILSFLNSDIVRLPGELGQLTKLRLLDLTDCLQ 280
              NL+ L L  + + D++ +  L  LE LS   + +  L G       L  L L +  +
Sbjct: 61  FFTNLKELHLSHNQISDLSPLKDLTKLEELSVNRNRLKNLNG--IPSACLSRLFLDNN-E 117

Query: 281 LKFIVPNVLSSFTRLEELY 299
           L+      L     LE L 
Sbjct: 118 LRDTDS--LIHLKNLEILS 134

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 47.5 bits (113), Expect = 2e-06
 Identities = 20/131 (15%), Positives = 46/131 (35%), Gaps = 6/131 (4%)

Query: 175 QLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPSSIGL-LANLQTLCLDQ- 232
           +L  + I +   +   I    F+ +  L+ + ++   +  LP    +       L +   
Sbjct: 80  KLHEIRIEKANNLL-YINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDN 138

Query: 233 ---SMLGDIAIIGKLKNLEILSFLNSDIVRLPGELGQLTKLRLLDLTDCLQLKFIVPNVL 289
                +   + +G      IL    + I  +       T+L  L+L+D   L+ +  +V 
Sbjct: 139 INIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVF 198

Query: 290 SSFTRLEELYM 300
              +    L +
Sbjct: 199 HGASGPVILDI 209

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 44.8 bits (106), Expect = 2e-05
 Identities = 20/105 (19%), Positives = 38/105 (36%), Gaps = 8/105 (7%)

Query: 201 TLRVIDLTRMRLFSLPSSIGLLANLQTLCLDQ---SMLGDIAIIGKLKNLEILSFLNSDI 257
           + RV      ++  +PS   L  N   L        ++   A  G   +LE +    +D+
Sbjct: 10  SNRVFLCQESKVTEIPS--DLPRNAIELRFVLTKLRVIQKGAFSG-FGDLEKIEISQNDV 66

Query: 258 VRL--PGELGQLTKLRLLDLTDCLQLKFIVPNVLSSFTRLEELYM 300
           + +        L KL  + +     L +I P    +   L+ L +
Sbjct: 67  LEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLI 111

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 43.7 bits (103), Expect = 4e-05
 Identities = 25/132 (18%), Positives = 45/132 (34%), Gaps = 9/132 (6%)

Query: 176 LEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSL--PSSIGLLANLQTLCLDQS 233
              L           I    F G   L  I++++  +  +        L  L  + ++++
Sbjct: 32  AIELRFVLTKLRV--IQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89

Query: 234 -MLGDIA--IIGKLKNLEILSFLNSDIVRLP-GELGQLTKLRLLDLTDCLQLKFIVPNVL 289
             L  I       L NL+ L   N+ I  LP        +  LLD+ D + +  I  N  
Sbjct: 90  NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSF 149

Query: 290 SSFT-RLEELYM 300
              +     L++
Sbjct: 150 VGLSFESVILWL 161

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 46.6 bits (111), Expect = 3e-06
 Identities = 25/125 (20%), Positives = 52/125 (41%), Gaps = 6/125 (4%)

Query: 179 LHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPSSI-GLLANLQTLCLDQSMLGD 237
           L ++ N F  +     IFK +  LR I+ +  ++  +        + +  + L  + L +
Sbjct: 37  LRLNNNEFTVLE-ATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLEN 95

Query: 238 I--AIIGKLKNLEILSFLNSDIVRLP-GELGQLTKLRLLDLTDCLQLKFIVPNVLSSFTR 294
           +   +   L++L+ L   ++ I  +       L+ +RLL L D  Q+  + P    +   
Sbjct: 96  VQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDN-QITTVAPGAFDTLHS 154

Query: 295 LEELY 299
           L  L 
Sbjct: 155 LSTLN 159

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 40.0 bits (94), Expect = 4e-04
 Identities = 15/115 (13%), Positives = 38/115 (33%), Gaps = 9/115 (7%)

Query: 191 IPDNIFKGMKTLRVIDLTRMRLFSLPSSIGL--LANLQTLCLDQSMLGDIA--IIGKLKN 246
           IP++I +    L    L       L ++     L  L+ +    + + DI          
Sbjct: 26  IPEHIPQYTAEL---RLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASG 82

Query: 247 LEILSFLNSDIVRLP-GELGQLTKLRLLDLTDCLQLKFIVPNVLSSFTRLEELYM 300
           +  +   ++ +  +       L  L+ L L    ++  +  +     + +  L +
Sbjct: 83  VNEILLTSNRLENVQHKMFKGLESLKTLMLRSN-RITCVGNDSFIGLSSVRLLSL 136

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 39.6 bits (93), Expect = 5e-04
 Identities = 18/94 (19%), Positives = 37/94 (39%), Gaps = 7/94 (7%)

Query: 211 RLFSLPSSIGLLANLQTLCLDQ---SMLGDIAIIGKLKNLEILSFLNSDIVRLP-GELGQ 266
           +L  +P    +      L L+    ++L    I  KL  L  ++F N+ I  +  G    
Sbjct: 22  KLNKIPE--HIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEG 79

Query: 267 LTKLRLLDLTDCLQLKFIVPNVLSSFTRLEELYM 300
            + +  + LT   +L+ +   +      L+ L +
Sbjct: 80  ASGVNEILLTSN-RLENVQHKMFKGLESLKTLML 112

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.0 bits (108), Expect = 9e-06
 Identities = 50/343 (14%), Positives = 99/343 (28%), Gaps = 99/343 (28%)

Query: 5   RNKSLHEWKNALRELQTPSVVNFEGV-PAETYSSIELSFKYLKG------EQLKKIF-LL 56
           R K + ++ +A          +   + P E      L  KYL         ++       
Sbjct: 273 RFKQVTDFLSAATTTHISLDHHSMTLTPDE---VKSLLLKYLDCRPQDLPREVLTTNPRR 329

Query: 57  CSLIGNS---------FW-------FTDLFKYSM-------------GLGIFQ-GVNRMV 86
            S+I  S          W        T + + S+              L +F    +   
Sbjct: 330 LSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPT 389

Query: 87  DARNKLYA---------LVHELRDSCLLLEGDSSEQFSMHDVVYDVVVSIACRDQ-HVFL 136
              + ++          +V++L    L+ +       S+  +  ++ V +      H  +
Sbjct: 390 ILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSI 449

Query: 137 VRN-EVVWEWPDEDALKK------CSAIS--LLNSSIHEVSEEFECLQLEFLHISQNTFV 187
           V +  +   +  +D +         S I   L N    E    F  + L+F       F+
Sbjct: 450 VDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDF------RFL 503

Query: 188 EVNIPDNIFKGMKTLRVIDLTRMRLFSLPSSIGLLANLQTLCLDQSMLGDIAIIGKLKNL 247
           E  I                 R    +  +S  +L  LQ L   +  + D     +    
Sbjct: 504 EQKI-----------------RHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVN 546

Query: 248 EILSFL---NSDIVRLPGELGQLTKLRLLDLTDCLQLKFIVPN 287
            IL FL     +++                 TD L++  +  +
Sbjct: 547 AILDFLPKIEENLICSK-------------YTDLLRIALMAED 576

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.9 bits (100), Expect = 9e-05
 Identities = 41/295 (13%), Positives = 83/295 (28%), Gaps = 83/295 (28%)

Query: 46  KGEQLKKIFLLCSLIGNSFWFTDLFKY-----SMGLGIFQGVNRMVDARNKLYA------ 94
           K E++ + F+   L  N  +     K      SM   ++      ++ R++LY       
Sbjct: 74  KQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMY------IEQRDRLYNDNQVFA 127

Query: 95  --------LVHELRDSCLLLEGDSSEQFSMHDVVY-------DVVVSIACRDQHVFLVR- 138
                      +LR +   L      +     ++          V    C    V     
Sbjct: 128 KYNVSRLQPYLKLRQA---LLELRPAKNV---LIDGVLGSGKTWVALDVCLSYKVQCKMD 181

Query: 139 NEVVWEWPDEDALKKCSAISLLNSSIHEVSEEFECLQLEFLHISQNTFVEVNIPDNIFKG 198
            ++ W             ++L   + +      E LQ     I  N     +   NI   
Sbjct: 182 FKIFW-------------LNL--KNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLR 226

Query: 199 MKTLRVIDLTRMRLFSLPSSIGLLANLQTL---------CLDQSML--GDIAIIGKLKNL 247
           + +++      ++     + + +L N+Q           C  + +L      +       
Sbjct: 227 IHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSC--KILLTTRFKQVT------ 278

Query: 248 EILSFLNSDIVRLPGELGQLTKLRLLDL--------TDCL--QLKFIVPNVLSSF 292
           + LS   +  + L      LT   +  L           L  ++    P  LS  
Sbjct: 279 DFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSII 333

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.4 bits (96), Expect = 3e-04
 Identities = 33/247 (13%), Positives = 76/247 (30%), Gaps = 50/247 (20%)

Query: 5   RNKSLHEWKNALRELQTPSVVNFEGVPAETYSSIELSFKYLKGEQLKKIFLLCSLIGNSF 64
           R +   + + AL EL+    V  +GV     +        +  +      + C +    F
Sbjct: 133 RLQPYLKLRQALLELRPAKNVLIDGVLGSGKTW-------VALDVCLSYKVQCKMDFKIF 185

Query: 65  WFTDLFKYSMGLGIFQGVNRMVDARNKLYALVHELRDSCLLLEGDSSEQFSMHDVVYDVV 124
           W        + L        +++   KL   +    +     +  S+ +  +H +  ++ 
Sbjct: 186 W--------LNLKNCNSPETVLEMLQKLLYQIDP--NWTSRSDHSSNIKLRIHSIQAELR 235

Query: 125 VSIACRD-QHVFLV-RNEVVWEWPDEDALK-KCSAISLLNSSIHEVSEEFECLQLEFLHI 181
             +  +  ++  LV  N  V      +A    C    LL +   +V+        +FL  
Sbjct: 236 RLLKSKPYENCLLVLLN--VQNAKAWNAFNLSCK--ILLTTRFKQVT--------DFLSA 283

Query: 182 SQNTFVEVNIPDNIFKGMKTLRVI-DLTRMRLFSLPS---SIGLLANLQTLCLDQSMLGD 237
           +  T + ++         +   ++      R   LP    +                   
Sbjct: 284 ATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRR-------------- 329

Query: 238 IAIIGKL 244
           ++II + 
Sbjct: 330 LSIIAES 336

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 44.7 bits (106), Expect = 1e-05
 Identities = 31/115 (26%), Positives = 52/115 (45%), Gaps = 5/115 (4%)

Query: 190 NIPDNIFKGMKTLRVIDLTRMRLFSLPSSI-GLLANLQTLCLDQSMLGDI--AIIGKLKN 246
            + D  F+G+  L  ++L   +L +L + +   L  L TL L  + L  +   +   L  
Sbjct: 49  TLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQ 108

Query: 247 LEILSFLNSDIVRLP-GELGQLTKLRLLDLTDCLQLKFIVPNVLSSFTRLEELYM 300
           L+ L    + +  LP G   +LTKL+ L L +  QL+ I        T L+ L +
Sbjct: 109 LDKLYLGGNQLKSLPSGVFDRLTKLKELRL-NTNQLQSIPAGAFDKLTNLQTLSL 162

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 43.9 bits (104), Expect = 3e-05
 Identities = 28/129 (21%), Positives = 54/129 (41%), Gaps = 7/129 (5%)

Query: 175 QLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPSSI-GLLANLQTLCLDQS 233
           +L +L++  N      +   +F  +  L  + L   +L SLP  +   L  L  L L  +
Sbjct: 60  KLTWLNLDYNQLQ--TLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGN 117

Query: 234 MLGDI--AIIGKLKNLEILSFLNSDIVRLP-GELGQLTKLRLLDLTDCLQLKFIVPNVLS 290
            L  +   +  +L  L+ L    + +  +P G   +LT L+ L L+   QL+ +      
Sbjct: 118 QLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTN-QLQSVPHGAFD 176

Query: 291 SFTRLEELY 299
              +L+ + 
Sbjct: 177 RLGKLQTIT 185

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 45.1 bits (107), Expect = 1e-05
 Identities = 18/127 (14%), Positives = 37/127 (29%), Gaps = 13/127 (10%)

Query: 173 CLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPSSIGLLANLQTLCLDQ 232
             +L +L+   N   +++           L  ++  R  L  +   +     L  L    
Sbjct: 105 LTKLTYLNCDTNKLTKLD-----VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHL 157

Query: 233 SMLGDIAIIGKLKNLEILSFLNSDIVRLPGELGQLTKLRLLDLTDCLQLKFIVPNVLSSF 292
           +       +     L  L    + I  L   + Q   L  L+      +  +    L+  
Sbjct: 158 NKKITKLDVTPQTQLTTLDCSFNKITELD--VSQNKLLNRLNCDTN-NITKL---DLNQN 211

Query: 293 TRLEELY 299
            +L  L 
Sbjct: 212 IQLTFLD 218

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 43.9 bits (104), Expect = 3e-05
 Identities = 25/160 (15%), Positives = 52/160 (32%), Gaps = 24/160 (15%)

Query: 157 ISLLNSSIHEVSEEFECLQLEFLHISQNTFVEVNIPDNI----------------FKGMK 200
           +    +      +     QL  L  S N   E+++  N                      
Sbjct: 153 LDCHLNKKITKLDVTPQTQLTTLDCSFNKITELDVSQNKLLNRLNCDTNNITKLDLNQNI 212

Query: 201 TLRVIDLTRMRLFSLPSSIGLLANLQTLCLDQSMLGDIAIIGKLKNLEILSFLNSDIVRL 260
            L  +D +  +L  +   +  L  L       + L ++  +  L  L  L  + +D++ +
Sbjct: 213 QLTFLDCSSNKLTEID--VTPLTQLTYFDCSVNPLTEL-DVSTLSKLTTLHCIQTDLLEI 269

Query: 261 PGELGQLTKLRLLDLTDCLQLKFIVPNVLSSFTRLEELYM 300
              L   T+L       C ++K +    ++  T+L  L  
Sbjct: 270 D--LTHNTQLIYFQAEGCRKIKEL---DVTHNTQLYLLDC 304

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 43.1 bits (102), Expect = 7e-05
 Identities = 19/105 (18%), Positives = 37/105 (35%), Gaps = 8/105 (7%)

Query: 196 FKGMKTLRVIDLTRMRLFSLPSSIGLLANLQTLCLDQSMLGDIAIIGKLKNLEILSFLNS 255
            + + TL  +D     +  +   I  L  L  L    + +  +  + +  NL  L+  ++
Sbjct: 38  EEQLATLTSLDCHNSSITDMTG-IEKLTGLTKLICTSNNITTL-DLSQNTNLTYLACDSN 95

Query: 256 DIVRLPGELGQLTKLRLLDLTDCLQLKFIVPNVLSSFTRLEELYM 300
            +  L   +  LTKL  L+         +    +S    L  L  
Sbjct: 96  KLTNLD--VTPLTKLTYLNCDTNK----LTKLDVSQNPLLTYLNC 134

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 42.4 bits (100), Expect = 1e-04
 Identities = 30/127 (23%), Positives = 48/127 (37%), Gaps = 13/127 (10%)

Query: 173 CLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPSSIGLLANLQTLCLDQ 232
            +QL FL  S N   E+++       +  L   D +   L  L  S   L+ L TL   Q
Sbjct: 211 NIQLTFLDCSSNKLTEIDV-----TPLTQLTYFDCSVNPLTELDVST--LSKLTTLHCIQ 263

Query: 233 SMLGDIAIIGKLKNLEILSFLNSDIVRLPGELGQLTKLRLLDLTDCLQLKFIVPNVLSSF 292
           + L +I +      L          ++   ++   T+L LLD      +  +    LS  
Sbjct: 264 TDLLEIDL-THNTQLIYFQAEGCRKIKEL-DVTHNTQLYLLDCQAA-GITEL---DLSQN 317

Query: 293 TRLEELY 299
            +L  LY
Sbjct: 318 PKLVYLY 324

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 41.2 bits (97), Expect = 3e-04
 Identities = 28/122 (22%), Positives = 42/122 (34%), Gaps = 11/122 (9%)

Query: 179 LHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPSSIGLLANLQTLCLDQSMLGDI 238
           L   Q        PD+ F        +        +   S   LA L +L    S + D+
Sbjct: 3   LKAGQTQSFNDWFPDDNFA-----SEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDM 57

Query: 239 AIIGKLKNLEILSFLNSDIVRLPGELGQLTKLRLLDLTDCLQLKFIVPNVLSSFTRLEEL 298
             I KL  L  L   +++I  L   L Q T L  L      +L  +    ++  T+L  L
Sbjct: 58  TGIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSN-KLTNL---DVTPLTKLTYL 111

Query: 299 YM 300
             
Sbjct: 112 NC 113

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 45.3 bits (107), Expect = 1e-05
 Identities = 20/126 (15%), Positives = 38/126 (30%), Gaps = 25/126 (19%)

Query: 175 QLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPSSIGLLANLQTLCLDQSM 234
            LE L +  N      +P+      ++L  +D++   L SLP+      + +        
Sbjct: 161 SLEVLSVRNNQLTF--LPE----LPESLEALDVSTNLLESLPAVPVRNHHSEET------ 208

Query: 235 LGDIAIIGKLKNLEILSFLNSDIVRLPGELGQLTKLRLLDLTDCLQLKFIVPNVLSSFTR 294
                               + I  +P  +  L     + L D   L   +   LS  T 
Sbjct: 209 ------------EIFFRCRENRITHIPENILSLDPTCTIILEDN-PLSSRIRESLSQQTA 255

Query: 295 LEELYM 300
             + + 
Sbjct: 256 QPDYHG 261

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 43.8 bits (103), Expect = 4e-05
 Identities = 33/153 (21%), Positives = 60/153 (39%), Gaps = 29/153 (18%)

Query: 138 RNEVVWEWPDEDALKKCSAISLLNSSIHEVSEEFECLQLEFLHISQNTFVEVNIPDNIFK 197
           RNE V     E  + + S + L   ++  + +     Q+  L I+QN  +   +P+    
Sbjct: 46  RNEAV-SLLKECLINQFSELQLNRLNLSSLPDNL-PPQITVLEITQNALIS--LPELP-- 99

Query: 198 GMKTLRVIDLTRMRLFSLPSSIGLLANLQTLCLDQSMLGDI-AIIGKLK----------- 245
              +L  +D    RL +LP       +L+ L +D + L  +  +   L+           
Sbjct: 100 --ASLEYLDACDNRLSTLPELPA---SLKHLDVDNNQLTMLPELPALLEYINADNNQLTM 154

Query: 246 ------NLEILSFLNSDIVRLPGELGQLTKLRL 272
                 +LE+LS  N+ +  LP     L  L +
Sbjct: 155 LPELPTSLEVLSVRNNQLTFLPELPESLEALDV 187

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 41.1 bits (96), Expect = 4e-04
 Identities = 19/126 (15%), Positives = 50/126 (39%), Gaps = 11/126 (8%)

Query: 151 LKKCSAISLLNSSIHEVSEEFECLQ-LEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTR 209
           L + S  + ++ +  +    ++  +       ++N  V + + + +         + L R
Sbjct: 13  LSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSL-LKECLINQ---FSELQLNR 68

Query: 210 MRLFSLPSSIGLLANLQTLCLDQSMLGDI-AIIGKLKNLEILSFLNSDIVRLPGELGQLT 268
           + L SLP ++     +  L + Q+ L  +  +   L+ L+     ++ +  LP     L 
Sbjct: 69  LNLSSLPDNLP--PQITVLEITQNALISLPELPASLEYLDAC---DNRLSTLPELPASLK 123

Query: 269 KLRLLD 274
            L + +
Sbjct: 124 HLDVDN 129

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 43.5 bits (103), Expect = 3e-05
 Identities = 25/112 (22%), Positives = 51/112 (45%), Gaps = 7/112 (6%)

Query: 171 FECL-QLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPSSI-GLLANLQTL 228
           F    +L  + +S N   E  +  + F+G+++L  + L   ++  LP S+   L +LQ L
Sbjct: 52  FSPYKKLRRIDLSNNQISE--LAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLL 109

Query: 229 CLDQSMLGDI--AIIGKLKNLEILSFLNSDIVRLP-GELGQLTKLRLLDLTD 277
            L+ + +  +       L NL +LS  ++ +  +  G    L  ++ + L  
Sbjct: 110 LLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQ 161

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 39.2 bits (92), Expect = 7e-04
 Identities = 17/93 (18%), Positives = 33/93 (35%), Gaps = 6/93 (6%)

Query: 211 RLFSLPSSIGLLANLQTLCLDQSMLGDI--AIIGKLKNLEILSFLNSDIVRLP-GELGQL 267
            L  +P+   L   +  + L+Q+ +  I        K L  +   N+ I  L       L
Sbjct: 22  GLTEIPT--NLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGL 79

Query: 268 TKLRLLDLTDCLQLKFIVPNVLSSFTRLEELYM 300
             L  L L    ++  +  ++      L+ L +
Sbjct: 80  RSLNSLVLYGN-KITELPKSLFEGLFSLQLLLL 111

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 44.0 bits (103), Expect = 3e-05
 Identities = 17/74 (22%), Positives = 28/74 (37%), Gaps = 3/74 (4%)

Query: 229 CLDQSMLGDIAIIGKLKNLEILSFL-NSDIVRLP-GELGQLTKLRLLDLTDCLQLKFIVP 286
           C     L  +  +   +NL  L       +  L   +L  L +LR L +     L+F+ P
Sbjct: 15  CTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAP 73

Query: 287 NVLSSFTRLEELYM 300
           +      RL  L +
Sbjct: 74  DAFHFTPRLSRLNL 87

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 43.5 bits (103), Expect = 4e-05
 Identities = 31/127 (24%), Positives = 53/127 (41%), Gaps = 25/127 (19%)

Query: 175 QLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPSSI-GLLANLQTLCLDQS 233
            L +L ++ N    +  P+ +F  +  L+ + L   +L SLP  +   L NL  L L  +
Sbjct: 86  NLTYLILTGNQLQSL--PNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHN 143

Query: 234 MLGDIAIIGKLKNLEILSFLNSDIVRLPGELGQLTKLRLLDLTDCLQLKFIVPNVLSSFT 293
                    +L++L              G   +LT L  LDL    QL+ +   V    T
Sbjct: 144 ---------QLQSLP------------KGVFDKLTNLTELDL-SYNQLQSLPEGVFDKLT 181

Query: 294 RLEELYM 300
           +L++L +
Sbjct: 182 QLKDLRL 188

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 43.7 bits (103), Expect = 5e-05
 Identities = 26/129 (20%), Positives = 45/129 (34%), Gaps = 10/129 (7%)

Query: 171 FECL-QLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPSSIGLLANLQTLC 229
              L +L  L +S N      +  ++F   + L  +D++  RL ++      +A+L+ L 
Sbjct: 72  ISFLSELRVLRLSHNRIRS--LDFHVFLFNQDLEYLDVSHNRLQNISC--CPMASLRHLD 127

Query: 230 LDQ---SMLGDIAIIGKLKNLEILSFLNSDIVRLPGELGQLTKLRLLDLTDCLQLKFIVP 286
           L      +L      G L  L  L    +   +L   L  +  L L  +   L    I  
Sbjct: 128 LSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLD--LLPVAHLHLSCILLDLVSYHIKG 185

Query: 287 NVLSSFTRL 295
               S    
Sbjct: 186 GETESLQIP 194

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 42.6 bits (100), Expect = 1e-04
 Identities = 23/150 (15%), Positives = 45/150 (30%), Gaps = 9/150 (6%)

Query: 157 ISLLNSSIHEVSEEFECLQLEFLHISQNTFVEV---NIPDNIFKGMKTLRVIDLTRMRLF 213
           I        ++ + F    +E+L+I   T  E             +K+L +  +      
Sbjct: 259 IETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFL 318

Query: 214 SLPSSIG-LLANLQTLCLDQSMLGDIAII--GKLKNLEILSFLNSDIVRLP-GELGQLTK 269
               ++  + A +    L  S    I ++      +   L+F  +            L +
Sbjct: 319 FSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKR 378

Query: 270 LRLLDLTDCLQLKFIVPNVLSSFTRLEELY 299
           L+ L L     LK     V      +  L 
Sbjct: 379 LQTLILQRN-GLKNF-FKVALMTKNMSSLE 406

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 40.6 bits (95), Expect = 5e-04
 Identities = 27/156 (17%), Positives = 53/156 (33%), Gaps = 31/156 (19%)

Query: 173 CLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPSSIGLLANLQTLCLD- 231
                FL+ +QN F +          +K L+ + L R  L +      +  N+ +L    
Sbjct: 352 PSSFTFLNFTQNVFTD--SVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLD 409

Query: 232 ------QSMLGDIAIIGKLK---------------------NLEILSFLNSDIVRLPGEL 264
                  S   D                              +++L   N+ I+ +P ++
Sbjct: 410 VSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIMSIPKDV 469

Query: 265 GQLTKLRLLDLTDCLQLKFIVPNVLSSFTRLEELYM 300
             L  L+ L++    QLK +   V    T L+ +++
Sbjct: 470 THLQALQELNVASN-QLKSVPDGVFDRLTSLQYIWL 504

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 40.9 bits (96), Expect = 1e-04
 Identities = 21/106 (19%), Positives = 37/106 (34%), Gaps = 2/106 (1%)

Query: 196 FKGMKTLRVIDLTRMRLFSLPSSIGLLANLQTLCLDQSMLGDIAIIGKLKNLEILSFLNS 255
              ++ L V+D  +     +        NL+ L L    L  ++ + KL  L+ L    +
Sbjct: 23  PAAVREL-VLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSEN 81

Query: 256 DIVRLPGELGQ-LTKLRLLDLTDCLQLKFIVPNVLSSFTRLEELYM 300
            I      L + L  L  L+L+            L     L+ L +
Sbjct: 82  RIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDL 127

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 40.0 bits (94), Expect = 2e-04
 Identities = 20/99 (20%), Positives = 33/99 (33%), Gaps = 1/99 (1%)

Query: 203 RVIDLTRMRLFSLPSSIGLLANLQTLCLDQSMLGDIAIIGKLKNLEILSFLNSDIVRLPG 262
            V+D +R     L         L+ L      L  IA + KL  L+ L   ++ +     
Sbjct: 22  LVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGGLE 81

Query: 263 ELGQ-LTKLRLLDLTDCLQLKFIVPNVLSSFTRLEELYM 300
            L +    L  L+L+            L     L+ L +
Sbjct: 82  VLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDL 120

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 40.0 bits (94), Expect = 2e-04
 Identities = 19/82 (23%), Positives = 39/82 (47%), Gaps = 5/82 (6%)

Query: 222 LANLQTLCLDQSMLGDIAIIG---KLKNLEILSFLNSDIVRLPGELGQLTKLRLLDLTDC 278
            ++++ L LD S   +  + G   + + LE LS +N  +  +   L +L KL+ L+L+D 
Sbjct: 16  PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIAN-LPKLNKLKKLELSDN 74

Query: 279 LQLKFIVPNVLSSFTRLEELYM 300
            ++   +  +      L  L +
Sbjct: 75  -RVSGGLEVLAEKCPNLTHLNL 95

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 39.6 bits (93), Expect = 3e-04
 Identities = 21/106 (19%), Positives = 41/106 (38%), Gaps = 1/106 (0%)

Query: 196 FKGMKTLRVIDLTRMRLFSLPSSIGLLANLQTLCLDQSMLGDIAIIGKLKNLEILSFLNS 255
           +      R +DL   ++  + +    L     +    + +  +     L+ L+ L   N+
Sbjct: 15  YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNN 74

Query: 256 DIVRLPGELGQ-LTKLRLLDLTDCLQLKFIVPNVLSSFTRLEELYM 300
            I R+   L Q L  L  L LT+   ++    + L+S   L  L +
Sbjct: 75  RICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCI 120

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 38.9 bits (91), Expect = 8e-04
 Identities = 17/86 (19%), Positives = 36/86 (41%), Gaps = 3/86 (3%)

Query: 215 LPSSIGLLANLQTLCLDQSMLGDIAIIGKLKNLEILSFLNSDIVRLPGELGQLTKLRLLD 274
           + +++  L   + L L  + +  I+ +  ++NL ILS   + I ++         L  L 
Sbjct: 40  MDATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELW 99

Query: 275 LTDCLQLKFIVPNVLSSFTRLEELYM 300
           ++   Q+  +    +     L  LYM
Sbjct: 100 ISYN-QIASLSG--IEKLVNLRVLYM 122

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	300
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.82
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.81
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.8
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.79
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.78
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.78
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.76
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.76
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.75
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.75
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.75
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.74
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.74
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.74
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.73
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.73
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.73
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.73
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.73
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.72
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.72
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.72
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.71
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.7
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.7
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.7
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.7
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.69
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.69
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.69
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.69
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.69
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.68
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.68
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.68
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.68
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.68
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.68
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.68
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.68
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.67
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.67
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.67
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.67
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.67
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.67
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.67
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.67
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.67
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.67
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.67
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.67
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.67
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.66
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.66
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.66
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.66
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.66
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.66
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.65
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.65
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.65
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.64
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.64
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.64
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.64
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.64
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.64
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.63
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.63
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.63
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.63
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.63
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.62
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.62
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.62
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.62
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.62
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.62
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.62
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.61
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.61
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.61
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.61
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.6
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.6
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.6
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.6
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.6
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.6
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.59
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.59
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.59
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.59
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.58
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.58
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.58
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.58
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.58
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.58
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.58
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.58
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.57
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.57
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.56
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.56
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.56
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.55
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.55
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.54
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.53
2a5y_B	549	CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis	99.53
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.52
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.51
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.51
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.5
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.49
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.49
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.48
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.46
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.46
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.46
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.44
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.42
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.39
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.39
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.38
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.38
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.38
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.36
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.36
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.3
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.27
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.19
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.15
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	99.14
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.12
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.11
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.1
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.0
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	98.99
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.98
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.91
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.83
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	98.81
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.78
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.67
1z6t_A	591	APAF-1, apoptotic protease activating factor 1; ca	98.64
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.43
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.38
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.35
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.31
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.28
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.26
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.2
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.19
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.18
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.16
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	96.79
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	96.46
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	96.25
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.15
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.06
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	96.02
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	95.96
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	95.42
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	95.23
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	94.82

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.82  E-value=4.2e-19  Score=153.17  Aligned_cols=164  Identities=24%  Similarity=0.352  Sum_probs=124.0

Q ss_pred             EEEeccccccCCC-ccccCCccEEEeecCCCcccCccc-cCCCccEEecccCccccccCchhH--------HhcCCcccE
Q 037969          135 FLVRNEVVWEWPD-EDALKKCSAISLLNSSIHEVSEEF-ECLQLEFLHISQNTFVEVNIPDNI--------FKGMKTLRV  204 (300)
Q Consensus       135 ~~~~~~~~~~~~~-~~~~~~l~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~l~~~~--------~~~l~~L~~  204 (300)
                      ..+.++.+..+|. ...+++++.|++++|.+..+|..+ .+++|++|++++|... +.+|..+        +.++++|++
T Consensus       109 L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~-~~~p~~~~~~~~~~~~~~l~~L~~  187 (328)
T 4fcg_A          109 MTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPEL-TELPEPLASTDASGEHQGLVNLQS  187 (328)
T ss_dssp             EEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEETTC-CCCCSCSEEEC-CCCEEESTTCCE
T ss_pred             EECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCCCCc-cccChhHhhccchhhhccCCCCCE
Confidence            4445555555554 356777888888888777777655 7778888888776552 5666654        124788888


Q ss_pred             EEeeCCcCCcCCcccccCCCCcEEEccCCCCCC-cccccCCCCcCEEEccCCCCC-CCchhhcCCCCCCEEeccCCCCcc
Q 037969          205 IDLTRMRLFSLPSSIGLLANLQTLCLDQSMLGD-IAIIGKLKNLEILSFLNSDIV-RLPGELGQLTKLRLLDLTDCLQLK  282 (300)
Q Consensus       205 L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~-p~~~~~l~~L~~L~l~~~~l~-~lp~~~~~l~~L~~L~l~~~~~l~  282 (300)
                      |++++|.++.+|..++.+++|++|++++|.+.. |+.++.+++|++|++++|++. .+|..++.+++|++|++++|...+
T Consensus       188 L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~  267 (328)
T 4fcg_A          188 LRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLL  267 (328)
T ss_dssp             EEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCC
T ss_pred             EECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchh
Confidence            888888888888888888888888888888887 777888888888888887544 777788888888888888888788


Q ss_pred             ccchhhhcCCCCCCeeeC
Q 037969          283 FIVPNVLSSFTRLEELYM  300 (300)
Q Consensus       283 ~lp~~~l~~L~~L~~L~l  300 (300)
                      .+|.. ++.+++|++|++
T Consensus       268 ~~p~~-~~~l~~L~~L~L  284 (328)
T 4fcg_A          268 TLPLD-IHRLTQLEKLDL  284 (328)
T ss_dssp             BCCTT-GGGCTTCCEEEC
T ss_pred             hcchh-hhcCCCCCEEeC
Confidence            88876 788888888875

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.81  E-value=4.1e-19  Score=153.28  Aligned_cols=162  Identities=19%  Similarity=0.304  Sum_probs=129.2

Q ss_pred             EEEeccccccCCCc-cccCCccEEEeecCCC-cccCccc----------cCCCccEEecccCccccccCchhHHhcCCcc
Q 037969          135 FLVRNEVVWEWPDE-DALKKCSAISLLNSSI-HEVSEEF----------ECLQLEFLHISQNTFVEVNIPDNIFKGMKTL  202 (300)
Q Consensus       135 ~~~~~~~~~~~~~~-~~~~~l~~L~l~~~~~-~~~~~~~----------~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L  202 (300)
                      ..+.++.+..+|.. ..+++++.|++++|.. ..+|..+          .+++|+.|++.+|.+  ..+|..+ ..+++|
T Consensus       132 L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l--~~lp~~l-~~l~~L  208 (328)
T 4fcg_A          132 LTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGI--RSLPASI-ANLQNL  208 (328)
T ss_dssp             EEEESCCCCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECC--CCCCGGG-GGCTTC
T ss_pred             EECCCCccccCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCc--CcchHhh-cCCCCC
Confidence            44555556666643 6678888888888655 6666654          388899999988888  6888775 788889


Q ss_pred             cEEEeeCCcCCcCCcccccCCCCcEEEccCCCCCC--cccccCCCCcCEEEccCCC-CCCCchhhcCCCCCCEEeccCCC
Q 037969          203 RVIDLTRMRLFSLPSSIGLLANLQTLCLDQSMLGD--IAIIGKLKNLEILSFLNSD-IVRLPGELGQLTKLRLLDLTDCL  279 (300)
Q Consensus       203 ~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~--p~~~~~l~~L~~L~l~~~~-l~~lp~~~~~l~~L~~L~l~~~~  279 (300)
                      ++|++++|.++.+|+.++.+++|++|++++|.+..  |..++.+++|++|++++|+ +..+|..++++++|++|++++|.
T Consensus       209 ~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~  288 (328)
T 4fcg_A          209 KSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCV  288 (328)
T ss_dssp             CEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCT
T ss_pred             CEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCC
Confidence            99999998888888888888889999998887665  6778888889999998884 45788888888999999999888


Q ss_pred             CccccchhhhcCCCCCCeeeC
Q 037969          280 QLKFIVPNVLSSFTRLEELYM  300 (300)
Q Consensus       280 ~l~~lp~~~l~~L~~L~~L~l  300 (300)
                      ..+.+|.. ++++++|+.+++
T Consensus       289 ~~~~iP~~-l~~L~~L~~l~l  308 (328)
T 4fcg_A          289 NLSRLPSL-IAQLPANCIILV  308 (328)
T ss_dssp             TCCCCCGG-GGGSCTTCEEEC
T ss_pred             chhhccHH-HhhccCceEEeC
Confidence            88888887 888888888754

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.80  E-value=1.4e-18  Score=145.91  Aligned_cols=163  Identities=25%  Similarity=0.375  Sum_probs=139.3

Q ss_pred             EEEeccccccCCCccccCCccEEEeecCCCcccCccccCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCc
Q 037969          135 FLVRNEVVWEWPDEDALKKCSAISLLNSSIHEVSEEFECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFS  214 (300)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~  214 (300)
                      ....+..+..++....+++++.|++++|.+..++....+++|++|++.+|.+  ..++...+..+++|++|++++|.++.
T Consensus        46 L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l--~~~~~~~~~~l~~L~~L~L~~n~l~~  123 (272)
T 3rfs_A           46 IIANNSDIKSVQGIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQL--QSLPNGVFDKLTNLKELVLVENQLQS  123 (272)
T ss_dssp             EECTTSCCCCCTTGGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCC--CCCCTTTTTTCTTCCEEECTTSCCCC
T ss_pred             eeeCCCCcccccccccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCcc--CccChhHhcCCcCCCEEECCCCcCCc
Confidence            3455555666677778899999999999998777666999999999999999  78888777899999999999999998


Q ss_pred             CCcc-cccCCCCcEEEccCCCCCC-c-ccccCCCCcCEEEccCCCCCCCchh-hcCCCCCCEEeccCCCCccccchhhhc
Q 037969          215 LPSS-IGLLANLQTLCLDQSMLGD-I-AIIGKLKNLEILSFLNSDIVRLPGE-LGQLTKLRLLDLTDCLQLKFIVPNVLS  290 (300)
Q Consensus       215 lp~~-i~~l~~L~~L~l~~~~l~~-p-~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~l~~lp~~~l~  290 (300)
                      +|.. ++.+++|++|++++|.+.. + ..++.+++|++|++++|.++.+|.. ++.+++|++|++++|. +..+|+..++
T Consensus       124 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~  202 (272)
T 3rfs_A          124 LPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQ-LKSVPDGVFD  202 (272)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTT
T ss_pred             cCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCc-CCccCHHHHh
Confidence            7654 7899999999999999888 4 4578999999999999999988765 5889999999999998 6777776688


Q ss_pred             CCCCCCeeeC
Q 037969          291 SFTRLEELYM  300 (300)
Q Consensus       291 ~L~~L~~L~l  300 (300)
                      .+++|++|++
T Consensus       203 ~l~~L~~L~l  212 (272)
T 3rfs_A          203 RLTSLQYIWL  212 (272)
T ss_dssp             TCTTCCEEEC
T ss_pred             CCcCCCEEEc
Confidence            9999999875

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.79  E-value=3.3e-18  Score=141.95  Aligned_cols=162  Identities=19%  Similarity=0.347  Sum_probs=135.8

Q ss_pred             EEEeccccccCCCccccCCccEEEeecCCCcccCcc-c-cCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcC
Q 037969          135 FLVRNEVVWEWPDEDALKKCSAISLLNSSIHEVSEE-F-ECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRL  212 (300)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~-~-~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~  212 (300)
                      ....+..+..+|.. ..++++.|++++|.+..++.. + .+++|+.|++++|.+  ..++...+..+++|++|++++|.+
T Consensus        19 l~~~~~~l~~~p~~-~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l--~~~~~~~~~~l~~L~~L~L~~n~l   95 (251)
T 3m19_A           19 VDCQGKSLDSVPSG-IPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQL--QTLSAGVFDDLTELGTLGLANNQL   95 (251)
T ss_dssp             EECTTCCCSSCCSC-CCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCC--CCCCTTTTTTCTTCCEEECTTSCC
T ss_pred             EecCCCCccccCCC-CCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcC--CccCHhHhccCCcCCEEECCCCcc
Confidence            34455556666653 346899999999999766543 3 899999999999999  777777678999999999999999


Q ss_pred             CcCC-cccccCCCCcEEEccCCCCCC-c-ccccCCCCcCEEEccCCCCCCCch-hhcCCCCCCEEeccCCCCccccchhh
Q 037969          213 FSLP-SSIGLLANLQTLCLDQSMLGD-I-AIIGKLKNLEILSFLNSDIVRLPG-ELGQLTKLRLLDLTDCLQLKFIVPNV  288 (300)
Q Consensus       213 ~~lp-~~i~~l~~L~~L~l~~~~l~~-p-~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~l~~lp~~~  288 (300)
                      +.+| ..++.+++|++|++++|.+.. + ..+..+++|++|++++|.++.+|. .++.+++|++|++++|. +..+|...
T Consensus        96 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~  174 (251)
T 3m19_A           96 ASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQ-LQSVPHGA  174 (251)
T ss_dssp             CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTT
T ss_pred             cccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCc-CCccCHHH
Confidence            9975 457899999999999999988 4 446889999999999999998887 58899999999999998 77888766


Q ss_pred             hcCCCCCCeeeC
Q 037969          289 LSSFTRLEELYM  300 (300)
Q Consensus       289 l~~L~~L~~L~l  300 (300)
                      +..+++|++|++
T Consensus       175 ~~~l~~L~~L~l  186 (251)
T 3m19_A          175 FDRLGKLQTITL  186 (251)
T ss_dssp             TTTCTTCCEEEC
T ss_pred             HhCCCCCCEEEe
Confidence            889999999875

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.78  E-value=5.9e-18  Score=141.98  Aligned_cols=163  Identities=25%  Similarity=0.373  Sum_probs=121.7

Q ss_pred             EEEeccccccCCC--ccccCCccEEEeecCCCcccCccc--cCCCccEEecccCccccccCchhHHhcCCcccEEEeeCC
Q 037969          135 FLVRNEVVWEWPD--EDALKKCSAISLLNSSIHEVSEEF--ECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRM  210 (300)
Q Consensus       135 ~~~~~~~~~~~~~--~~~~~~l~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~  210 (300)
                      ..+.+..+..++.  ...+++++.|++++|.+..++...  .+++|++|++++|.+  ..+|...|..+++|++|++++|
T Consensus        42 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l--~~~~~~~~~~l~~L~~L~l~~n  119 (270)
T 2o6q_A           42 LDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKL--QALPIGVFDQLVNLAELRLDRN  119 (270)
T ss_dssp             EECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCC--CCCCTTTTTTCSSCCEEECCSS
T ss_pred             EECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcC--CcCCHhHcccccCCCEEECCCC
Confidence            3344444555543  255677888888888877666543  678888888888887  7777766677888888888888


Q ss_pred             cCCcCC-cccccCCCCcEEEccCCCCCC-c-ccccCCCCcCEEEccCCCCCCCchh-hcCCCCCCEEeccCCCCccccch
Q 037969          211 RLFSLP-SSIGLLANLQTLCLDQSMLGD-I-AIIGKLKNLEILSFLNSDIVRLPGE-LGQLTKLRLLDLTDCLQLKFIVP  286 (300)
Q Consensus       211 ~~~~lp-~~i~~l~~L~~L~l~~~~l~~-p-~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~l~~lp~  286 (300)
                      .++.+| ..++.+++|++|++++|.+.. | ..++.+++|++|++++|.++.+|.. +.++++|++|++++|. +..+|.
T Consensus       120 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~  198 (270)
T 2o6q_A          120 QLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQ-LKRVPE  198 (270)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC-CSCCCT
T ss_pred             ccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCc-CCcCCH
Confidence            888764 446788888888888888777 4 4477888888888888888877764 6778888888888887 677777


Q ss_pred             hhhcCCCCCCeeeC
Q 037969          287 NVLSSFTRLEELYM  300 (300)
Q Consensus       287 ~~l~~L~~L~~L~l  300 (300)
                      ..+..+++|+.|++
T Consensus       199 ~~~~~l~~L~~L~l  212 (270)
T 2o6q_A          199 GAFDSLEKLKMLQL  212 (270)
T ss_dssp             TTTTTCTTCCEEEC
T ss_pred             HHhccccCCCEEEe
Confidence            66778888888765

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.78  E-value=7.8e-18  Score=141.23  Aligned_cols=161  Identities=24%  Similarity=0.369  Sum_probs=132.4

Q ss_pred             EEeccccccCCCccccCCccEEEeecCCCcccCc-cc-cCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCC
Q 037969          136 LVRNEVVWEWPDEDALKKCSAISLLNSSIHEVSE-EF-ECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLF  213 (300)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~-~~-~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~  213 (300)
                      ...+..+..+|. ...++++.|+++++.+..++. .+ .+++|++|++.+|.+  ..+|..+|..+++|++|++++|.++
T Consensus        22 ~~~~~~l~~ip~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l--~~i~~~~~~~l~~L~~L~l~~n~l~   98 (270)
T 2o6q_A           22 DCSSKKLTAIPS-NIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKL--QTLPAGIFKELKNLETLWVTDNKLQ   98 (270)
T ss_dssp             ECTTSCCSSCCS-CCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCC--SCCCTTTTSSCTTCCEEECCSSCCC
T ss_pred             EccCCCCCccCC-CCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCcc--CeeChhhhcCCCCCCEEECCCCcCC
Confidence            344455666665 334678999999999977775 33 889999999999998  7888887788999999999999999


Q ss_pred             cCCc-ccccCCCCcEEEccCCCCCC--cccccCCCCcCEEEccCCCCCCCchh-hcCCCCCCEEeccCCCCccccchhhh
Q 037969          214 SLPS-SIGLLANLQTLCLDQSMLGD--IAIIGKLKNLEILSFLNSDIVRLPGE-LGQLTKLRLLDLTDCLQLKFIVPNVL  289 (300)
Q Consensus       214 ~lp~-~i~~l~~L~~L~l~~~~l~~--p~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~l~~lp~~~l  289 (300)
                      .+|. .+..+++|++|++++|.+..  +..++.+++|++|++++|.++.+|.. ++.+++|++|++++|. +..+|...+
T Consensus        99 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~  177 (270)
T 2o6q_A           99 ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQ-LKRVPEGAF  177 (270)
T ss_dssp             CCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTT
T ss_pred             cCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCc-CcEeChhHh
Confidence            8764 46889999999999999887  45678999999999999999988876 7889999999999998 777877668


Q ss_pred             cCCCCCCeeeC
Q 037969          290 SSFTRLEELYM  300 (300)
Q Consensus       290 ~~L~~L~~L~l  300 (300)
                      ..+++|++|++
T Consensus       178 ~~l~~L~~L~L  188 (270)
T 2o6q_A          178 DKLTELKTLKL  188 (270)
T ss_dssp             TTCTTCCEEEC
T ss_pred             ccCCCcCEEEC
Confidence            88999998875

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.76  E-value=7.7e-18  Score=134.57  Aligned_cols=144  Identities=17%  Similarity=0.226  Sum_probs=126.0

Q ss_pred             cccCCccEEEeecCCCcccCccccCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCc-CCcccccCCCCcE
Q 037969          149 DALKKCSAISLLNSSIHEVSEEFECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFS-LPSSIGLLANLQT  227 (300)
Q Consensus       149 ~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~-lp~~i~~l~~L~~  227 (300)
                      ..+++++.|+++++.+..+|....+++|+.|++.+|.+  ..++ . +..+++|++|++++|.++. .|..++.+++|++
T Consensus        41 ~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~--~~~~-~-l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~  116 (197)
T 4ezg_A           41 AQMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHA--TNYN-P-ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL  116 (197)
T ss_dssp             HHHHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCC--SCCG-G-GTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred             hhcCCccEEeccCCCccChHHHhcCCCCCEEEccCCCC--Ccch-h-hhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence            45678999999999998888656999999999999977  5555 3 4789999999999999987 6788999999999


Q ss_pred             EEccCCCCCC--cccccCCCCcCEEEccCCC-CCCCchhhcCCCCCCEEeccCCCCccccchhhhcCCCCCCeeeC
Q 037969          228 LCLDQSMLGD--IAIIGKLKNLEILSFLNSD-IVRLPGELGQLTKLRLLDLTDCLQLKFIVPNVLSSFTRLEELYM  300 (300)
Q Consensus       228 L~l~~~~l~~--p~~~~~l~~L~~L~l~~~~-l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l  300 (300)
                      |++++|.+..  |..++.+++|++|++++|. ++.+| .+..+++|++|++++|. +..++.  +..+++|++|++
T Consensus       117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~-i~~~~~--l~~l~~L~~L~l  188 (197)
T 4ezg_A          117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDG-VHDYRG--IEDFPKLNQLYA  188 (197)
T ss_dssp             EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBC-CCCCTT--GGGCSSCCEEEE
T ss_pred             EEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCC-CcChHH--hccCCCCCEEEe
Confidence            9999999986  7889999999999999997 88887 68999999999999998 777773  889999999874

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.76  E-value=1.6e-17  Score=135.88  Aligned_cols=139  Identities=22%  Similarity=0.300  Sum_probs=100.9

Q ss_pred             eccccccCCCccccCCccEEEeecCCCcccC-ccc-cCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCcC
Q 037969          138 RNEVVWEWPDEDALKKCSAISLLNSSIHEVS-EEF-ECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSL  215 (300)
Q Consensus       138 ~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~-~~~-~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~l  215 (300)
                      .+..+..+|. ...++++.|++++|.+..++ ..+ .+++|+.|++++|.+  ..+|...|..+++|++|++++|.++.+
T Consensus        27 ~~~~l~~ip~-~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l--~~i~~~~~~~l~~L~~L~Ls~N~l~~l  103 (229)
T 3e6j_A           27 RSKRHASVPA-GIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL--GALPVGVFDSLTQLTVLDLGTNQLTVL  103 (229)
T ss_dssp             TTSCCSSCCS-CCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC--CCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred             cCCCcCccCC-CCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCC--CCcChhhcccCCCcCEEECCCCcCCcc
Confidence            3444555554 33467788888888775553 333 777888888888887  777776667778888888888888776


Q ss_pred             Ccc-cccCCCCcEEEccCCCCCC-cccccCCCCcCEEEccCCCCCCCchh-hcCCCCCCEEeccCCC
Q 037969          216 PSS-IGLLANLQTLCLDQSMLGD-IAIIGKLKNLEILSFLNSDIVRLPGE-LGQLTKLRLLDLTDCL  279 (300)
Q Consensus       216 p~~-i~~l~~L~~L~l~~~~l~~-p~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~  279 (300)
                      |.. +..+++|++|++++|.+.. |..+..+++|++|++++|.++.+|.. +..+++|+.|++++|+
T Consensus       104 ~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~  170 (229)
T 3e6j_A          104 PSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNP  170 (229)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred             ChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCC
Confidence            544 5777888888888888777 77777788888888888877777643 6777788888888776

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.75  E-value=4.1e-17  Score=138.31  Aligned_cols=157  Identities=20%  Similarity=0.322  Sum_probs=134.9

Q ss_pred             EEEeccccccCCCccccCCccEEEeecCCCcccCccccCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCc
Q 037969          135 FLVRNEVVWEWPDEDALKKCSAISLLNSSIHEVSEEFECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFS  214 (300)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~  214 (300)
                      ..+.+..+..++....+++++.|++++|.+..++....+++|+.|++++|.+  ..++.  +..+++|++|++++|.++.
T Consensus        51 L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n~l--~~~~~--l~~l~~L~~L~L~~n~i~~  126 (291)
T 1h6t_A           51 IIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKV--KDLSS--LKDLKKLKSLSLEHNGISD  126 (291)
T ss_dssp             EECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCC--CCGGG--GTTCTTCCEEECTTSCCCC
T ss_pred             EEccCCCcccChhHhcCCCCCEEEccCCccCCCcccccCCCCCEEECCCCcC--CCChh--hccCCCCCEEECCCCcCCC
Confidence            4455556666666677889999999999998777755899999999999998  77665  5889999999999999998


Q ss_pred             CCcccccCCCCcEEEccCCCCCCcccccCCCCcCEEEccCCCCCCCchhhcCCCCCCEEeccCCCCccccchhhhcCCCC
Q 037969          215 LPSSIGLLANLQTLCLDQSMLGDIAIIGKLKNLEILSFLNSDIVRLPGELGQLTKLRLLDLTDCLQLKFIVPNVLSSFTR  294 (300)
Q Consensus       215 lp~~i~~l~~L~~L~l~~~~l~~p~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~l~~L~~  294 (300)
                      ++ .++.+++|++|++++|.+...+.++.+++|++|++++|.++.++. +..+++|++|++++|. +..+|.  +..+++
T Consensus       127 ~~-~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~-i~~l~~--l~~l~~  201 (291)
T 1h6t_A          127 IN-GLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNH-ISDLRA--LAGLKN  201 (291)
T ss_dssp             CG-GGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCBCGG--GTTCTT
T ss_pred             Ch-hhcCCCCCCEEEccCCcCCcchhhccCCCCCEEEccCCccccchh-hcCCCccCEEECCCCc-CCCChh--hccCCC
Confidence            74 588999999999999998887788999999999999999998876 8999999999999998 777875  889999


Q ss_pred             CCeeeC
Q 037969          295 LEELYM  300 (300)
Q Consensus       295 L~~L~l  300 (300)
                      |+.|++
T Consensus       202 L~~L~l  207 (291)
T 1h6t_A          202 LDVLEL  207 (291)
T ss_dssp             CSEEEE
T ss_pred             CCEEEC
Confidence            998874

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.75  E-value=2.1e-17  Score=140.01  Aligned_cols=147  Identities=24%  Similarity=0.280  Sum_probs=101.4

Q ss_pred             cccCCccEEEeecCCCcccCccccCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCcCC-cccccCCCCcE
Q 037969          149 DALKKCSAISLLNSSIHEVSEEFECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLP-SSIGLLANLQT  227 (300)
Q Consensus       149 ~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp-~~i~~l~~L~~  227 (300)
                      ..+++++.|++++|.+..++....+++|++|++++|.+  ..+|..+ ..+++|++|++++|.++.+| ..++.+++|++
T Consensus        52 ~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l--~~l~~~~-~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~  128 (290)
T 1p9a_G           52 MPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQL--QSLPLLG-QTLPALTVLDVSFNRLTSLPLGALRGLGELQE  128 (290)
T ss_dssp             TTCTTCCEEECTTSCCCEEECCSCCTTCCEEECCSSCC--SSCCCCT-TTCTTCCEEECCSSCCCCCCSSTTTTCTTCCE
T ss_pred             hcCCCCCEEECCCCccCcccCCCCCCcCCEEECCCCcC--CcCchhh-ccCCCCCEEECCCCcCcccCHHHHcCCCCCCE
Confidence            44566677777777766665555677777777777777  6666644 66777777777777777764 45677777777


Q ss_pred             EEccCCCCCC-c-ccccCCCCcCEEEccCCCCCCCchh-hcCCCCCCEEeccCCCCccccchhhhcCCCCCCeeeC
Q 037969          228 LCLDQSMLGD-I-AIIGKLKNLEILSFLNSDIVRLPGE-LGQLTKLRLLDLTDCLQLKFIVPNVLSSFTRLEELYM  300 (300)
Q Consensus       228 L~l~~~~l~~-p-~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l  300 (300)
                      |++++|.+.. | ..+..+++|+.|++++|.++.+|.. +.++++|++|++++|. +..+|.. +..+.+|+.|++
T Consensus       129 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~-l~~ip~~-~~~~~~L~~l~L  202 (290)
T 1p9a_G          129 LYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENS-LYTIPKG-FFGSHLLPFAFL  202 (290)
T ss_dssp             EECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSC-CCCCCTT-TTTTCCCSEEEC
T ss_pred             EECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCc-CCccChh-hcccccCCeEEe
Confidence            7777777766 3 4456777777777777777777765 3567777777777777 6677766 566667776654

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.75  E-value=3.1e-17  Score=138.56  Aligned_cols=162  Identities=24%  Similarity=0.334  Sum_probs=112.1

Q ss_pred             EEeccccccCCC--ccccCCccEEEeecCCCccc-Cccc-cCCCccEEecccCc-cccccCchhHHhcCCcccEEEeeCC
Q 037969          136 LVRNEVVWEWPD--EDALKKCSAISLLNSSIHEV-SEEF-ECLQLEFLHISQNT-FVEVNIPDNIFKGMKTLRVIDLTRM  210 (300)
Q Consensus       136 ~~~~~~~~~~~~--~~~~~~l~~L~l~~~~~~~~-~~~~-~~~~L~~L~l~~~~-~~~~~l~~~~~~~l~~L~~L~l~~~  210 (300)
                      .+.+..+..++.  ...+++++.|++++|.+..+ +..+ .+++|++|++++|. +  ..++...+..+++|++|++++|
T Consensus        38 ~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l--~~~~~~~~~~l~~L~~L~l~~n  115 (285)
T 1ozn_A           38 FLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL--RSVDPATFHGLGRLHTLHLDRC  115 (285)
T ss_dssp             ECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTC--CCCCTTTTTTCTTCCEEECTTS
T ss_pred             EeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCc--cccCHHHhcCCcCCCEEECCCC
Confidence            334444444442  24566777777777777555 3333 67778888888776 5  5564444577788888888888


Q ss_pred             cCCcC-CcccccCCCCcEEEccCCCCCC-c-ccccCCCCcCEEEccCCCCCCCchh-hcCCCCCCEEeccCCCCccccch
Q 037969          211 RLFSL-PSSIGLLANLQTLCLDQSMLGD-I-AIIGKLKNLEILSFLNSDIVRLPGE-LGQLTKLRLLDLTDCLQLKFIVP  286 (300)
Q Consensus       211 ~~~~l-p~~i~~l~~L~~L~l~~~~l~~-p-~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~l~~lp~  286 (300)
                      .++.+ |..++.+++|++|++++|.+.. + ..++.+++|++|++++|.++.+|.. +..+++|++|++++|. +..+++
T Consensus       116 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~  194 (285)
T 1ozn_A          116 GLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNR-VAHVHP  194 (285)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCEECT
T ss_pred             cCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCc-ccccCH
Confidence            87775 5567778888888888888776 3 4477788888888888888777664 7778888888888887 455533


Q ss_pred             hhhcCCCCCCeeeC
Q 037969          287 NVLSSFTRLEELYM  300 (300)
Q Consensus       287 ~~l~~L~~L~~L~l  300 (300)
                      ..++.+++|++|++
T Consensus       195 ~~~~~l~~L~~L~l  208 (285)
T 1ozn_A          195 HAFRDLGRLMTLYL  208 (285)
T ss_dssp             TTTTTCTTCCEEEC
T ss_pred             hHccCcccccEeeC
Confidence            33778888888764

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.74  E-value=6.1e-17  Score=138.41  Aligned_cols=156  Identities=17%  Similarity=0.288  Sum_probs=103.9

Q ss_pred             EEeccccccCCCccccCCccEEEeecCCCcccCccccCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCcC
Q 037969          136 LVRNEVVWEWPDEDALKKCSAISLLNSSIHEVSEEFECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSL  215 (300)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~l  215 (300)
                      .+.++.+..++....+++++.|++++|.+..++....+++|+.|++++|.+  ..++.  +..+++|++|++++|.++.+
T Consensus        69 ~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l--~~~~~--l~~l~~L~~L~l~~n~l~~~  144 (308)
T 1h6u_A           69 ELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQI--TDVTP--LAGLSNLQVLYLDLNQITNI  144 (308)
T ss_dssp             ECCSSCCCCCGGGTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEECTTSCC--CCCGG--GTTCTTCCEEECCSSCCCCC
T ss_pred             EccCCcCCCChhHccCCCCCEEEccCCcCCCchhhcCCCCCCEEECCCCCC--CCchh--hcCCCCCCEEECCCCccCcC
Confidence            344444444444455666677777776666665544667777777777766  55554  46677777777777777766


Q ss_pred             CcccccCCCCcEEEccCCCCCCcccccCCCCcCEEEccCCCCCCCchhhcCCCCCCEEeccCCCCccccchhhhcCCCCC
Q 037969          216 PSSIGLLANLQTLCLDQSMLGDIAIIGKLKNLEILSFLNSDIVRLPGELGQLTKLRLLDLTDCLQLKFIVPNVLSSFTRL  295 (300)
Q Consensus       216 p~~i~~l~~L~~L~l~~~~l~~p~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~l~~L~~L  295 (300)
                      |. ++.+++|++|++++|.+...+.+..+++|+.|++++|.++.+|. +..+++|++|++++|. +..+++  +..+++|
T Consensus       145 ~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~N~-l~~~~~--l~~l~~L  219 (308)
T 1h6u_A          145 SP-LAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP-LASLPNLIEVHLKNNQ-ISDVSP--LANTSNL  219 (308)
T ss_dssp             GG-GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECTTSC-CCBCGG--GTTCTTC
T ss_pred             cc-ccCCCCccEEEccCCcCCCChhhcCCCCCCEEECCCCccCcChh-hcCCCCCCEEEccCCc-cCcccc--ccCCCCC
Confidence            54 66777777777777777663237777777777777777776664 6777777777777777 566664  6777777


Q ss_pred             CeeeC
Q 037969          296 EELYM  300 (300)
Q Consensus       296 ~~L~l  300 (300)
                      +.|++
T Consensus       220 ~~L~l  224 (308)
T 1h6u_A          220 FIVTL  224 (308)
T ss_dssp             CEEEE
T ss_pred             CEEEc
Confidence            77653

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.74  E-value=3.3e-17  Score=138.82  Aligned_cols=157  Identities=20%  Similarity=0.255  Sum_probs=107.9

Q ss_pred             eccccccCCCccccCCccEEEeecCCCcccCc-cc-cCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCcC
Q 037969          138 RNEVVWEWPDEDALKKCSAISLLNSSIHEVSE-EF-ECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSL  215 (300)
Q Consensus       138 ~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~-~~-~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~l  215 (300)
                      .+..+..+|. ...++++.|++++|.+..++. .+ .+++|+.|++.+|.+  ..++..  ..+++|++|++++|.++.+
T Consensus        18 ~~~~l~~ip~-~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l--~~~~~~--~~l~~L~~L~Ls~N~l~~l   92 (290)
T 1p9a_G           18 DKRNLTALPP-DLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL--TKLQVD--GTLPVLGTLDLSHNQLQSL   92 (290)
T ss_dssp             TTSCCSSCCS-CCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCC--CEEECC--SCCTTCCEEECCSSCCSSC
T ss_pred             CCCCCCcCCC-CCCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCcc--CcccCC--CCCCcCCEEECCCCcCCcC
Confidence            3344445554 233567777777777755442 23 677777777777777  555552  5677777777777777777


Q ss_pred             CcccccCCCCcEEEccCCCCCC-c-ccccCCCCcCEEEccCCCCCCCchh-hcCCCCCCEEeccCCCCccccchhhhcCC
Q 037969          216 PSSIGLLANLQTLCLDQSMLGD-I-AIIGKLKNLEILSFLNSDIVRLPGE-LGQLTKLRLLDLTDCLQLKFIVPNVLSSF  292 (300)
Q Consensus       216 p~~i~~l~~L~~L~l~~~~l~~-p-~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~l~~lp~~~l~~L  292 (300)
                      |..+..+++|++|++++|.+.. | ..+..+++|++|++++|.++.+|.. +..+++|+.|++++|. +..+|...+..+
T Consensus        93 ~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l  171 (290)
T 1p9a_G           93 PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN-LTELPAGLLNGL  171 (290)
T ss_dssp             CCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC-CSCCCTTTTTTC
T ss_pred             chhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCc-CCccCHHHhcCc
Confidence            7777777777777777777776 3 5577777777777777777766655 4667777777777777 667776656677


Q ss_pred             CCCCeeeC
Q 037969          293 TRLEELYM  300 (300)
Q Consensus       293 ~~L~~L~l  300 (300)
                      ++|++|++
T Consensus       172 ~~L~~L~L  179 (290)
T 1p9a_G          172 ENLDTLLL  179 (290)
T ss_dssp             TTCCEEEC
T ss_pred             CCCCEEEC
Confidence            77777764

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.74  E-value=4.2e-17  Score=136.93  Aligned_cols=148  Identities=28%  Similarity=0.381  Sum_probs=130.7

Q ss_pred             ccccCCccEEEeecCCCcccCccccCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCcCCc-ccccCCCCc
Q 037969          148 EDALKKCSAISLLNSSIHEVSEEFECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPS-SIGLLANLQ  226 (300)
Q Consensus       148 ~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L~  226 (300)
                      ...+++++.|++.++.+..++....+++|+.|++++|.+  ..++ . +..+++|++|++++|.++.+|. .++.+++|+
T Consensus        37 ~~~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l--~~~~-~-l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  112 (272)
T 3rfs_A           37 QNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKL--HDIS-A-LKELTNLTYLILTGNQLQSLPNGVFDKLTNLK  112 (272)
T ss_dssp             HHHHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCC--CCCG-G-GTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred             cccccceeeeeeCCCCcccccccccCCCCcEEECCCCCC--CCch-h-hcCCCCCCEEECCCCccCccChhHhcCCcCCC
Confidence            356788999999999998888877999999999999998  6665 3 4899999999999999999765 478999999


Q ss_pred             EEEccCCCCCC-c-ccccCCCCcCEEEccCCCCCCCchh-hcCCCCCCEEeccCCCCccccchhhhcCCCCCCeeeC
Q 037969          227 TLCLDQSMLGD-I-AIIGKLKNLEILSFLNSDIVRLPGE-LGQLTKLRLLDLTDCLQLKFIVPNVLSSFTRLEELYM  300 (300)
Q Consensus       227 ~L~l~~~~l~~-p-~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l  300 (300)
                      +|++++|.+.. + ..++.+++|++|++++|.++.+|.. ++.+++|++|++++|. +..+|+..++.+++|++|++
T Consensus       113 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L  188 (272)
T 3rfs_A          113 ELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQ-LQSLPEGVFDKLTQLKDLRL  188 (272)
T ss_dssp             EEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEEC
T ss_pred             EEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCC-cCccCHHHhcCCccCCEEEC
Confidence            99999999988 4 5579999999999999999988776 5899999999999998 77888776789999999975

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.73  E-value=5.8e-17  Score=136.93  Aligned_cols=149  Identities=21%  Similarity=0.317  Sum_probs=128.6

Q ss_pred             cccCCccEEEeecCC-Cccc-Cccc-cCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCcCCc-ccccCCC
Q 037969          149 DALKKCSAISLLNSS-IHEV-SEEF-ECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPS-SIGLLAN  224 (300)
Q Consensus       149 ~~~~~l~~L~l~~~~-~~~~-~~~~-~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~  224 (300)
                      ..+++++.|++++|. +..+ +..+ .+++|+.|++.+|.+  ..++...+..+++|++|++++|.++.+|. .++.+++
T Consensus        77 ~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l--~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~  154 (285)
T 1ozn_A           77 TGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGL--QELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGN  154 (285)
T ss_dssp             TTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCC--CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred             CCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcC--CEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCC
Confidence            557889999999997 7666 4444 899999999999999  77766666889999999999999999765 4889999


Q ss_pred             CcEEEccCCCCCC-c-ccccCCCCcCEEEccCCCCCCC-chhhcCCCCCCEEeccCCCCccccchhhhcCCCCCCeeeC
Q 037969          225 LQTLCLDQSMLGD-I-AIIGKLKNLEILSFLNSDIVRL-PGELGQLTKLRLLDLTDCLQLKFIVPNVLSSFTRLEELYM  300 (300)
Q Consensus       225 L~~L~l~~~~l~~-p-~~~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l  300 (300)
                      |++|++++|.+.. + ..+..+++|++|++++|.++.+ |..++++++|+.|++++|. +..+|...+..+++|++|++
T Consensus       155 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l  232 (285)
T 1ozn_A          155 LTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANN-LSALPTEALAPLRALQYLRL  232 (285)
T ss_dssp             CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CSCCCHHHHTTCTTCCEEEC
T ss_pred             ccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCc-CCcCCHHHcccCcccCEEec
Confidence            9999999999987 4 4588999999999999999865 7789999999999999998 77788766899999999875

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.73  E-value=3.5e-17  Score=133.06  Aligned_cols=141  Identities=21%  Similarity=0.342  Sum_probs=109.0

Q ss_pred             EEeccccccCCCccccCCccEEEeecCCCcccCc-cc-cCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCC
Q 037969          136 LVRNEVVWEWPDEDALKKCSAISLLNSSIHEVSE-EF-ECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLF  213 (300)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~-~~-~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~  213 (300)
                      ...+..+..+|. ...++++.|++++|.+..++. .+ .+++|+.|++++|.+  ..+++..|.++++|++|++++|.++
T Consensus        17 ~c~~~~l~~iP~-~l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i--~~~~~~~~~~l~~L~~L~Ls~N~l~   93 (220)
T 2v9t_B           17 DCRGKGLTEIPT-NLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQI--SELAPDAFQGLRSLNSLVLYGNKIT   93 (220)
T ss_dssp             ECTTSCCSSCCS-SCCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCC--CEECTTTTTTCSSCCEEECCSSCCC
T ss_pred             EcCCCCcCcCCC-ccCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcC--CCcCHHHhhCCcCCCEEECCCCcCC
Confidence            344555666665 234678888888888877664 23 788888888888888  6665445588888888888888888


Q ss_pred             cCCcc-cccCCCCcEEEccCCCCCC--cccccCCCCcCEEEccCCCCCCCchh-hcCCCCCCEEeccCCC
Q 037969          214 SLPSS-IGLLANLQTLCLDQSMLGD--IAIIGKLKNLEILSFLNSDIVRLPGE-LGQLTKLRLLDLTDCL  279 (300)
Q Consensus       214 ~lp~~-i~~l~~L~~L~l~~~~l~~--p~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~  279 (300)
                      .+|.. +..+++|++|++++|.+..  |..+..+++|++|++++|.++.+|.. +..+++|++|++++|+
T Consensus        94 ~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~  163 (220)
T 2v9t_B           94 ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNP  163 (220)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             ccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCC
Confidence            87655 5778888888888888887  56788888888888888888877764 7778888888888887

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.73  E-value=1.1e-16  Score=136.80  Aligned_cols=157  Identities=25%  Similarity=0.346  Sum_probs=135.0

Q ss_pred             EEEeccccccCCCccccCCccEEEeecCCCcccCccccCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCc
Q 037969          135 FLVRNEVVWEWPDEDALKKCSAISLLNSSIHEVSEEFECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFS  214 (300)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~  214 (300)
                      ..+.+..+..++....+++++.|++++|.+..++....+++|+.|++++|.+  ..++.  +..+++|++|++++|.++.
T Consensus        46 L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l--~~~~~--~~~l~~L~~L~l~~n~l~~  121 (308)
T 1h6u_A           46 LSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPL--KNVSA--IAGLQSIKTLDLTSTQITD  121 (308)
T ss_dssp             EECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCC--SCCGG--GTTCTTCCEEECTTSCCCC
T ss_pred             EEeeCCCccCchhhhccCCCCEEEccCCcCCCChhHccCCCCCEEEccCCcC--CCchh--hcCCCCCCEEECCCCCCCC
Confidence            4455555666776677899999999999998888755899999999999998  77764  5889999999999999999


Q ss_pred             CCcccccCCCCcEEEccCCCCCCcccccCCCCcCEEEccCCCCCCCchhhcCCCCCCEEeccCCCCccccchhhhcCCCC
Q 037969          215 LPSSIGLLANLQTLCLDQSMLGDIAIIGKLKNLEILSFLNSDIVRLPGELGQLTKLRLLDLTDCLQLKFIVPNVLSSFTR  294 (300)
Q Consensus       215 lp~~i~~l~~L~~L~l~~~~l~~p~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~l~~L~~  294 (300)
                      +|. ++.+++|++|++++|.+...+.++.+++|++|++++|.++.+|. +..+++|++|++++|. +..+|.  +..+++
T Consensus       122 ~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~--l~~l~~  196 (308)
T 1h6u_A          122 VTP-LAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNK-ISDISP--LASLPN  196 (308)
T ss_dssp             CGG-GTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCCGG--GGGCTT
T ss_pred             chh-hcCCCCCCEEECCCCccCcCccccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCc-cCcChh--hcCCCC
Confidence            875 88999999999999999884448899999999999999998887 8999999999999998 777776  789999


Q ss_pred             CCeeeC
Q 037969          295 LEELYM  300 (300)
Q Consensus       295 L~~L~l  300 (300)
                      |++|++
T Consensus       197 L~~L~L  202 (308)
T 1h6u_A          197 LIEVHL  202 (308)
T ss_dssp             CCEEEC
T ss_pred             CCEEEc
Confidence            999875

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.73  E-value=5.1e-17  Score=132.07  Aligned_cols=141  Identities=23%  Similarity=0.290  Sum_probs=101.8

Q ss_pred             EEeccccccCCCccccCCccEEEeecCCCcccCc--cc-cCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcC
Q 037969          136 LVRNEVVWEWPDEDALKKCSAISLLNSSIHEVSE--EF-ECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRL  212 (300)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~--~~-~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~  212 (300)
                      ...+..+..+|. .....++.|++++|.+..++.  .+ .+++|+.|++++|.+  ..+++..|..+++|++|++++|.+
T Consensus        17 ~~s~n~l~~iP~-~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i--~~i~~~~~~~l~~L~~L~Ls~N~l   93 (220)
T 2v70_A           17 DCSNQKLNKIPE-HIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKI--TDIEEGAFEGASGVNEILLTSNRL   93 (220)
T ss_dssp             ECCSSCCSSCCS-CCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCC--CEECTTTTTTCTTCCEEECCSSCC
T ss_pred             EeCCCCcccCcc-CCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcC--CEECHHHhCCCCCCCEEECCCCcc
Confidence            344455555554 334456788888888766532  22 778888888888887  666665567788888888888888


Q ss_pred             CcCCc-ccccCCCCcEEEccCCCCCC--cccccCCCCcCEEEccCCCCCCC-chhhcCCCCCCEEeccCCC
Q 037969          213 FSLPS-SIGLLANLQTLCLDQSMLGD--IAIIGKLKNLEILSFLNSDIVRL-PGELGQLTKLRLLDLTDCL  279 (300)
Q Consensus       213 ~~lp~-~i~~l~~L~~L~l~~~~l~~--p~~~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l~~~~  279 (300)
                      +.+|. .++.+++|++|++++|.+..  |..+..+++|++|++++|.++.+ |..+..+++|++|++++|+
T Consensus        94 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~  164 (220)
T 2v70_A           94 ENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANP  164 (220)
T ss_dssp             CCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred             CccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcC
Confidence            77644 47778888888888888776  56677788888888888887766 5567778888888888877

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.73  E-value=5.3e-17  Score=135.64  Aligned_cols=143  Identities=28%  Similarity=0.339  Sum_probs=104.3

Q ss_pred             ccccCCccEEEeecCCCcccCccccCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCcCCcccccCCCCcE
Q 037969          148 EDALKKCSAISLLNSSIHEVSEEFECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPSSIGLLANLQT  227 (300)
Q Consensus       148 ~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~  227 (300)
                      ...+++++.|++.+|.+..++....+++|+.|++++|.+  ..++.  +..+++|++|++++|.++.+|....  .+|++
T Consensus        37 ~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i--~~~~~--l~~l~~L~~L~L~~N~l~~l~~~~~--~~L~~  110 (263)
T 1xeu_A           37 QKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQI--SDLSP--LKDLTKLEELSVNRNRLKNLNGIPS--ACLSR  110 (263)
T ss_dssp             HHHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCC--CCCGG--GTTCSSCCEEECCSSCCSCCTTCCC--SSCCE
T ss_pred             hhhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCcc--CCChh--hccCCCCCEEECCCCccCCcCcccc--CcccE
Confidence            345667778888887777777555777888888888777  66666  4777888888888887777765433  77888


Q ss_pred             EEccCCCCCCcccccCCCCcCEEEccCCCCCCCchhhcCCCCCCEEeccCCCCccccchhhhcCCCCCCeeeC
Q 037969          228 LCLDQSMLGDIAIIGKLKNLEILSFLNSDIVRLPGELGQLTKLRLLDLTDCLQLKFIVPNVLSSFTRLEELYM  300 (300)
Q Consensus       228 L~l~~~~l~~p~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l  300 (300)
                      |++++|.+..++.++.+++|++|++++|.++.+| .++.+++|++|++++|. +..++ . +..+++|+.|++
T Consensus       111 L~L~~N~l~~~~~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~-i~~~~-~-l~~l~~L~~L~l  179 (263)
T 1xeu_A          111 LFLDNNELRDTDSLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNE-ITNTG-G-LTRLKKVNWIDL  179 (263)
T ss_dssp             EECCSSCCSBSGGGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSC-CCBCT-T-STTCCCCCEEEE
T ss_pred             EEccCCccCCChhhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCc-CcchH-H-hccCCCCCEEeC
Confidence            8888887777556777788888888888777775 57777888888888877 55553 2 677777777753

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.72  E-value=8.6e-17  Score=136.35  Aligned_cols=143  Identities=29%  Similarity=0.374  Sum_probs=130.0

Q ss_pred             cccCCccEEEeecCCCcccCccccCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCcCCcccccCCCCcEE
Q 037969          149 DALKKCSAISLLNSSIHEVSEEFECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPSSIGLLANLQTL  228 (300)
Q Consensus       149 ~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L  228 (300)
                      ..+++++.|++.++.+..++....+++|+.|++++|.+  ..+++  +..+++|++|++++|.++.+|. ++.+++|++|
T Consensus        43 ~~l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l--~~~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L  117 (291)
T 1h6t_A           43 NELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKL--TDIKP--LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSL  117 (291)
T ss_dssp             HHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCC--CCCGG--GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEE
T ss_pred             hhcCcccEEEccCCCcccChhHhcCCCCCEEEccCCcc--CCCcc--cccCCCCCEEECCCCcCCCChh-hccCCCCCEE
Confidence            45778999999999998888767999999999999999  77777  5899999999999999999765 8999999999


Q ss_pred             EccCCCCCCcccccCCCCcCEEEccCCCCCCCchhhcCCCCCCEEeccCCCCccccchhhhcCCCCCCeeeC
Q 037969          229 CLDQSMLGDIAIIGKLKNLEILSFLNSDIVRLPGELGQLTKLRLLDLTDCLQLKFIVPNVLSSFTRLEELYM  300 (300)
Q Consensus       229 ~l~~~~l~~p~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l  300 (300)
                      ++++|.+..++.+..+++|++|++++|.++.+ ..++.+++|++|++++|. +..+++  +..+++|++|++
T Consensus       118 ~L~~n~i~~~~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~-l~~~~~--l~~l~~L~~L~L  185 (291)
T 1h6t_A          118 SLEHNGISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQ-ISDIVP--LAGLTKLQNLYL  185 (291)
T ss_dssp             ECTTSCCCCCGGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSC-CCCCGG--GTTCTTCCEEEC
T ss_pred             ECCCCcCCCChhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCc-cccchh--hcCCCccCEEEC
Confidence            99999998877899999999999999999988 579999999999999998 777776  889999999975

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.72  E-value=3.8e-17  Score=134.49  Aligned_cols=162  Identities=15%  Similarity=0.166  Sum_probs=105.8

Q ss_pred             EEeccccccCCC--ccccCCccEEEeecCC-CcccCcc-c-cCCCccEEeccc-CccccccCchhHHhcCCcccEEEeeC
Q 037969          136 LVRNEVVWEWPD--EDALKKCSAISLLNSS-IHEVSEE-F-ECLQLEFLHISQ-NTFVEVNIPDNIFKGMKTLRVIDLTR  209 (300)
Q Consensus       136 ~~~~~~~~~~~~--~~~~~~l~~L~l~~~~-~~~~~~~-~-~~~~L~~L~l~~-~~~~~~~l~~~~~~~l~~L~~L~l~~  209 (300)
                      .+.++.+..++.  ...+++++.|++++|. +..++.. + .+++|+.|++++ |.+  ..++...|..+++|++|++++
T Consensus        37 ~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l--~~i~~~~f~~l~~L~~L~l~~  114 (239)
T 2xwt_C           37 KLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNL--TYIDPDALKELPLLKFLGIFN  114 (239)
T ss_dssp             EEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTC--CEECTTSEECCTTCCEEEEEE
T ss_pred             EEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCe--eEcCHHHhCCCCCCCEEeCCC
Confidence            344444444443  2456677777777775 6666542 2 677777777776 666  666655556777777777777


Q ss_pred             CcCCcCCcccccCCCCc---EEEccCC-CCCC-c-ccccCCCCcC-EEEccCCCCCCCchhhcCCCCCCEEeccCCCCcc
Q 037969          210 MRLFSLPSSIGLLANLQ---TLCLDQS-MLGD-I-AIIGKLKNLE-ILSFLNSDIVRLPGELGQLTKLRLLDLTDCLQLK  282 (300)
Q Consensus       210 ~~~~~lp~~i~~l~~L~---~L~l~~~-~l~~-p-~~~~~l~~L~-~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~  282 (300)
                      |.++.+|. ++.+.+|+   +|++++| .+.. + ..+..+++|+ +|++++|.++.+|......++|+.|++++|+.++
T Consensus       115 n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~n~~l~  193 (239)
T 2xwt_C          115 TGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLT  193 (239)
T ss_dssp             ECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEECTTCTTCC
T ss_pred             CCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcCCCCCcc
Confidence            77777665 66666666   7777777 6665 3 4466777777 7777777777776665555677777777774466


Q ss_pred             ccchhhhcCC-CCCCeeeC
Q 037969          283 FIVPNVLSSF-TRLEELYM  300 (300)
Q Consensus       283 ~lp~~~l~~L-~~L~~L~l  300 (300)
                      .+|...+..+ ++|++|++
T Consensus       194 ~i~~~~~~~l~~~L~~L~l  212 (239)
T 2xwt_C          194 VIDKDAFGGVYSGPSLLDV  212 (239)
T ss_dssp             EECTTTTTTCSBCCSEEEC
T ss_pred             cCCHHHhhccccCCcEEEC
Confidence            6665556666 77776654

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.72  E-value=1e-16  Score=132.97  Aligned_cols=144  Identities=23%  Similarity=0.341  Sum_probs=127.3

Q ss_pred             CccEEEeecCCCcccCccccCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCcCC-cccccCCCCcEEEcc
Q 037969          153 KCSAISLLNSSIHEVSEEFECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLP-SSIGLLANLQTLCLD  231 (300)
Q Consensus       153 ~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp-~~i~~l~~L~~L~l~  231 (300)
                      +.+.+++.++.+..+|..+. ++++.|++.+|.+  ..++...+..+++|++|++++|.++.++ ..+..+++|++|+++
T Consensus        15 ~~~~l~~~~~~l~~~p~~~~-~~l~~L~L~~n~l--~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~   91 (251)
T 3m19_A           15 GKKEVDCQGKSLDSVPSGIP-ADTEKLDLQSTGL--ATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA   91 (251)
T ss_dssp             GGTEEECTTCCCSSCCSCCC-TTCCEEECTTSCC--CCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred             CCeEEecCCCCccccCCCCC-CCCCEEEccCCCc--CccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence            45789999999988887654 6899999999999  7777766789999999999999999964 558999999999999


Q ss_pred             CCCCCC-c-ccccCCCCcCEEEccCCCCCCCchh-hcCCCCCCEEeccCCCCccccchhhhcCCCCCCeeeC
Q 037969          232 QSMLGD-I-AIIGKLKNLEILSFLNSDIVRLPGE-LGQLTKLRLLDLTDCLQLKFIVPNVLSSFTRLEELYM  300 (300)
Q Consensus       232 ~~~l~~-p-~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l  300 (300)
                      +|.+.. + ..+..+++|++|++++|.++.+|.. +..+++|++|++++|. +..+|...++.+++|++|+|
T Consensus        92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L  162 (251)
T 3m19_A           92 NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQ-LQSIPAGAFDKLTNLQTLSL  162 (251)
T ss_dssp             TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEEC
T ss_pred             CCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCc-CCccCHHHcCcCcCCCEEEC
Confidence            999988 4 6678999999999999999998876 5889999999999998 78888766899999999985

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.71  E-value=2.3e-16  Score=146.35  Aligned_cols=155  Identities=20%  Similarity=0.320  Sum_probs=120.0

Q ss_pred             EeccccccCCCccccCCccEEEeecCCCcccCccccCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCcCC
Q 037969          137 VRNEVVWEWPDEDALKKCSAISLLNSSIHEVSEEFECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLP  216 (300)
Q Consensus       137 ~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp  216 (300)
                      +.+..+..++....+++|+.|++++|.+..++....+++|+.|++++|.+  ..+|.  +..+++|+.|+|++|.+..+|
T Consensus        50 l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l--~~l~~--l~~l~~L~~L~Ls~N~l~~l~  125 (605)
T 1m9s_A           50 ANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKI--KDLSS--LKDLKKLKSLSLEHNGISDIN  125 (605)
T ss_dssp             CTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCC--CCCTT--STTCTTCCEEECTTSCCCCCG
T ss_pred             CcCCCCCCChHHccCCCCCEEEeeCCCCCCChhhccCCCCCEEECcCCCC--CCChh--hccCCCCCEEEecCCCCCCCc
Confidence            34444555566667788888888888887777655888888888888887  66653  477888888888888888764


Q ss_pred             cccccCCCCcEEEccCCCCCCcccccCCCCcCEEEccCCCCCCCchhhcCCCCCCEEeccCCCCccccchhhhcCCCCCC
Q 037969          217 SSIGLLANLQTLCLDQSMLGDIAIIGKLKNLEILSFLNSDIVRLPGELGQLTKLRLLDLTDCLQLKFIVPNVLSSFTRLE  296 (300)
Q Consensus       217 ~~i~~l~~L~~L~l~~~~l~~p~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~l~~L~~L~  296 (300)
                       .++.+++|+.|+|++|.+...+.++.+++|+.|++++|.++.+++ +..+++|+.|++++|. +..+|.  +..+++|+
T Consensus       126 -~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~-i~~l~~--l~~l~~L~  200 (605)
T 1m9s_A          126 -GLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNH-ISDLRA--LAGLKNLD  200 (605)
T ss_dssp             -GGGGCTTCSEEECCSSCCCCCGGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCBCGG--GTTCTTCS
T ss_pred             -cccCCCccCEEECCCCccCCchhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCC-CCCChH--HccCCCCC
Confidence             477888888888888888776678888888888888888887766 7888888888888887 666654  78888888


Q ss_pred             eeeC
Q 037969          297 ELYM  300 (300)
Q Consensus       297 ~L~l  300 (300)
                      .|+|
T Consensus       201 ~L~L  204 (605)
T 1m9s_A          201 VLEL  204 (605)
T ss_dssp             EEEC
T ss_pred             EEEc
Confidence            8765

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.70  E-value=3.2e-16  Score=126.14  Aligned_cols=144  Identities=21%  Similarity=0.314  Sum_probs=119.9

Q ss_pred             EeccccccCCCccccCCccEEEeecCCCcccCccc--cCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCc
Q 037969          137 VRNEVVWEWPDEDALKKCSAISLLNSSIHEVSEEF--ECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFS  214 (300)
Q Consensus       137 ~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~  214 (300)
                      ..+..+..+|. ...++++.|+++++.+..++...  .+++|+.|++.+|.+  ..+|...|..+++|++|++++|.++.
T Consensus        14 c~~~~l~~~p~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l--~~~~~~~~~~l~~L~~L~Ls~n~l~~   90 (208)
T 2o6s_A           14 CYSQGRTSVPT-GIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKL--QSLPNGVFNKLTSLTYLNLSTNQLQS   90 (208)
T ss_dssp             CCSSCCSSCCS-CCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCC--CCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred             ecCCCccCCCC-CCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCcc--CccChhhcCCCCCcCEEECCCCcCCc
Confidence            34444555554 34568999999999997777643  899999999999999  78888777889999999999999999


Q ss_pred             CCcc-cccCCCCcEEEccCCCCCC-c-ccccCCCCcCEEEccCCCCCCCchh-hcCCCCCCEEeccCCCCccc
Q 037969          215 LPSS-IGLLANLQTLCLDQSMLGD-I-AIIGKLKNLEILSFLNSDIVRLPGE-LGQLTKLRLLDLTDCLQLKF  283 (300)
Q Consensus       215 lp~~-i~~l~~L~~L~l~~~~l~~-p-~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~l~~  283 (300)
                      +|.. ++.+++|++|++++|.+.. + ..+..+++|++|++++|.++.+|.. +.++++|++|++++|.....
T Consensus        91 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~  163 (208)
T 2o6s_A           91 LPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT  163 (208)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCC
T ss_pred             cCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecC
Confidence            8654 6899999999999999988 4 4578999999999999999988876 78899999999999974433

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.70  E-value=1.2e-16  Score=139.73  Aligned_cols=161  Identities=24%  Similarity=0.299  Sum_probs=134.3

Q ss_pred             EEEeccccccCCCccccCCccEEEeecCCCcccCccc---cCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCc
Q 037969          135 FLVRNEVVWEWPDEDALKKCSAISLLNSSIHEVSEEF---ECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMR  211 (300)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~  211 (300)
                      ....+..+..+|. .....++.|++++|.+..++...   .+++|+.|++++|.+  ..++...|..+++|++|+|++|.
T Consensus        23 l~c~~~~l~~iP~-~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i--~~i~~~~~~~l~~L~~L~Ls~N~   99 (361)
T 2xot_A           23 LSCSKQQLPNVPQ-SLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHL--NFISSEAFVPVPNLRYLDLSSNH   99 (361)
T ss_dssp             EECCSSCCSSCCS-SCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCC--CEECTTTTTTCTTCCEEECCSSC
T ss_pred             EEeCCCCcCccCc-cCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcC--CccChhhccCCCCCCEEECCCCc
Confidence            4455566777775 34567899999999997776543   789999999999999  88887767999999999999999


Q ss_pred             CCcCCc-ccccCCCCcEEEccCCCCCC--cccccCCCCcCEEEccCCCCCCCchhh----cCCCCCCEEeccCCCCcccc
Q 037969          212 LFSLPS-SIGLLANLQTLCLDQSMLGD--IAIIGKLKNLEILSFLNSDIVRLPGEL----GQLTKLRLLDLTDCLQLKFI  284 (300)
Q Consensus       212 ~~~lp~-~i~~l~~L~~L~l~~~~l~~--p~~~~~l~~L~~L~l~~~~l~~lp~~~----~~l~~L~~L~l~~~~~l~~l  284 (300)
                      ++.+|. .+..+.+|++|++++|.+..  +..+..+++|++|++++|.++.+|..+    ..+++|++|++++|. +..+
T Consensus       100 l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~-l~~l  178 (361)
T 2xot_A          100 LHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNK-LKKL  178 (361)
T ss_dssp             CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSC-CCCC
T ss_pred             CCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCC-CCcc
Confidence            999754 68999999999999999987  678999999999999999999999875    679999999999998 8888


Q ss_pred             chhhhcCCCCC--Ceee
Q 037969          285 VPNVLSSFTRL--EELY  299 (300)
Q Consensus       285 p~~~l~~L~~L--~~L~  299 (300)
                      |...+..++++  +.|+
T Consensus       179 ~~~~~~~l~~~~l~~l~  195 (361)
T 2xot_A          179 PLTDLQKLPAWVKNGLY  195 (361)
T ss_dssp             CHHHHHHSCHHHHTTEE
T ss_pred             CHHHhhhccHhhcceEE
Confidence            87657777653  5554

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.70  E-value=1.9e-16  Score=133.06  Aligned_cols=152  Identities=24%  Similarity=0.314  Sum_probs=118.3

Q ss_pred             ccccCCCccccCCccEEEeecCCCcccCc-cc-cCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCcCC-c
Q 037969          141 VVWEWPDEDALKKCSAISLLNSSIHEVSE-EF-ECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLP-S  217 (300)
Q Consensus       141 ~~~~~~~~~~~~~l~~L~l~~~~~~~~~~-~~-~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp-~  217 (300)
                      .+..+|. ...++++.|++++|.+..++. .+ .+++|++|++++|.+  ..++...+..+++|++|++++|.++.++ .
T Consensus        18 ~l~~ip~-~l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l--~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~   94 (276)
T 2z62_A           18 NFYKIPD-NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEI--QTIEDGAYQSLSHLSTLILTGNPIQSLALG   94 (276)
T ss_dssp             CCSSCCS-SSCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCC--CEECTTTTTTCTTCCEEECTTCCCCEECTT
T ss_pred             CccccCC-CCCCCccEEECCCCcccccCHhHhccccCCcEEECCCCcC--CccCHHHccCCcCCCEEECCCCccCccChh
Confidence            3444554 234578899999998876664 33 788999999999888  7777666688899999999999888864 6


Q ss_pred             ccccCCCCcEEEccCCCCCC-c-ccccCCCCcCEEEccCCCCCC--CchhhcCCCCCCEEeccCCCCccccchhhhcCCC
Q 037969          218 SIGLLANLQTLCLDQSMLGD-I-AIIGKLKNLEILSFLNSDIVR--LPGELGQLTKLRLLDLTDCLQLKFIVPNVLSSFT  293 (300)
Q Consensus       218 ~i~~l~~L~~L~l~~~~l~~-p-~~~~~l~~L~~L~l~~~~l~~--lp~~~~~l~~L~~L~l~~~~~l~~lp~~~l~~L~  293 (300)
                      .+..+++|++|++++|.+.. + ..++.+++|++|++++|.++.  +|..++++++|++|++++|. +..+|...+..++
T Consensus        95 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~  173 (276)
T 2z62_A           95 AFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRVLH  173 (276)
T ss_dssp             TTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC-CCEECGGGGHHHH
T ss_pred             hhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCC-CCcCCHHHhhhhh
Confidence            68888999999999998877 3 468888999999999998875  68888899999999999988 6666544455555


Q ss_pred             CCC
Q 037969          294 RLE  296 (300)
Q Consensus       294 ~L~  296 (300)
                      +|+
T Consensus       174 ~L~  176 (276)
T 2z62_A          174 QMP  176 (276)
T ss_dssp             TCT
T ss_pred             hcc
Confidence            555

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.70  E-value=1e-16  Score=149.63  Aligned_cols=155  Identities=23%  Similarity=0.295  Sum_probs=130.3

Q ss_pred             eccccccCCCccccCCccEEEeecCCCcccCcc-c-cCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCcC
Q 037969          138 RNEVVWEWPDEDALKKCSAISLLNSSIHEVSEE-F-ECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSL  215 (300)
Q Consensus       138 ~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~-~-~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~l  215 (300)
                      .+.++..+|. ...++++.|++++|.+..++.. + ++++|++|++++|.+  ..+|+..|.++++|++|+|++|+++.+
T Consensus        39 ~~~~l~~vP~-~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i--~~i~~~~f~~L~~L~~L~Ls~N~l~~l  115 (635)
T 4g8a_A           39 MELNFYKIPD-NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEI--QTIEDGAYQSLSHLSTLILTGNPIQSL  115 (635)
T ss_dssp             TTSCCSSCCS-SSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCC--CEECTTTTTTCTTCCEEECTTCCCCEE
T ss_pred             CCCCcCccCC-CCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcC--CCcChhHhcCCCCCCEEEccCCcCCCC
Confidence            3445667775 3456899999999999888753 3 899999999999999  889888789999999999999999998


Q ss_pred             Cc-ccccCCCCcEEEccCCCCCC-c-ccccCCCCcCEEEccCCCCC--CCchhhcCCCCCCEEeccCCCCccccchhhhc
Q 037969          216 PS-SIGLLANLQTLCLDQSMLGD-I-AIIGKLKNLEILSFLNSDIV--RLPGELGQLTKLRLLDLTDCLQLKFIVPNVLS  290 (300)
Q Consensus       216 p~-~i~~l~~L~~L~l~~~~l~~-p-~~~~~l~~L~~L~l~~~~l~--~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~l~  290 (300)
                      |+ .++++++|++|++++|.+.. + ..++.+++|++|++++|.++  .+|..++.+++|++|++++|. +..++...+.
T Consensus       116 ~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~l~  194 (635)
T 4g8a_A          116 ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLR  194 (635)
T ss_dssp             CGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC-CCEECGGGGH
T ss_pred             CHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcc-cccccccccc
Confidence            65 58999999999999999988 4 56899999999999999887  467889999999999999998 6666554465


Q ss_pred             CCCCCC
Q 037969          291 SFTRLE  296 (300)
Q Consensus       291 ~L~~L~  296 (300)
                      .+.+++
T Consensus       195 ~L~~l~  200 (635)
T 4g8a_A          195 VLHQMP  200 (635)
T ss_dssp             HHHTCT
T ss_pred             chhhhh
Confidence            555443

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.69  E-value=4.2e-16  Score=127.45  Aligned_cols=143  Identities=21%  Similarity=0.300  Sum_probs=126.3

Q ss_pred             ccEEEeecCCCcccCccccCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCcCCcc-cccCCCCcEEEccC
Q 037969          154 CSAISLLNSSIHEVSEEFECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPSS-IGLLANLQTLCLDQ  232 (300)
Q Consensus       154 l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~-i~~l~~L~~L~l~~  232 (300)
                      .+.++.+++.+..+|.... ++|+.|++++|.+  ..+++..|..+++|++|++++|.++.+|.. +..+++|++|++++
T Consensus        21 ~~~v~c~~~~l~~ip~~~~-~~L~~L~Ls~n~i--~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~   97 (229)
T 3e6j_A           21 GTTVDCRSKRHASVPAGIP-TNAQILYLHDNQI--TKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT   97 (229)
T ss_dssp             TTEEECTTSCCSSCCSCCC-TTCSEEECCSSCC--CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEeEccCCCcCccCCCCC-CCCCEEEcCCCcc--CccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence            3568888888888887554 8999999999999  777666668999999999999999998754 68999999999999


Q ss_pred             CCCCC-c-ccccCCCCcCEEEccCCCCCCCchhhcCCCCCCEEeccCCCCccccchhhhcCCCCCCeeeC
Q 037969          233 SMLGD-I-AIIGKLKNLEILSFLNSDIVRLPGELGQLTKLRLLDLTDCLQLKFIVPNVLSSFTRLEELYM  300 (300)
Q Consensus       233 ~~l~~-p-~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l  300 (300)
                      |.+.. + ..+..+++|++|++++|.++.+|..+..+++|++|++++|. +..+|...+..+++|++|++
T Consensus        98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l  166 (229)
T 3e6j_A           98 NQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQ-LKSIPHGAFDRLSSLTHAYL  166 (229)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEEC
T ss_pred             CcCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCc-CCccCHHHHhCCCCCCEEEe
Confidence            99988 4 45789999999999999999999999999999999999998 88888766899999999875

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.69  E-value=2.6e-16  Score=141.56  Aligned_cols=36  Identities=17%  Similarity=0.280  Sum_probs=16.6

Q ss_pred             cCCccEEEeecCCCcccCcc-c-cCCCccEEecccCcc
Q 037969          151 LKKCSAISLLNSSIHEVSEE-F-ECLQLEFLHISQNTF  186 (300)
Q Consensus       151 ~~~l~~L~l~~~~~~~~~~~-~-~~~~L~~L~l~~~~~  186 (300)
                      +++++.|++++|.+..++.. + .+++|+.|++++|.+
T Consensus       122 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l  159 (452)
T 3zyi_A          122 LASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPI  159 (452)
T ss_dssp             CTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCC
T ss_pred             cccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCc
Confidence            44444455554444444332 1 445555555555444

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.69  E-value=1.7e-16  Score=147.87  Aligned_cols=158  Identities=24%  Similarity=0.321  Sum_probs=131.5

Q ss_pred             EEEeccccccCCCccccCCccEEEeecCCCcccCc-cc-cCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcC
Q 037969          135 FLVRNEVVWEWPDEDALKKCSAISLLNSSIHEVSE-EF-ECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRL  212 (300)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~-~~-~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~  212 (300)
                      ....+..+..+|. ...++++.|++++|.+..++. .+ ++++|++|++++|.+  ..+++..|.++++|++|++++|.+
T Consensus        16 ~~c~~~~l~~ip~-~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l--~~i~~~~~~~l~~L~~L~Ls~n~l   92 (606)
T 3vq2_A           16 YQCMDQKLSKVPD-DIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEI--ETIEDKAWHGLHHLSNLILTGNPI   92 (606)
T ss_dssp             EECTTSCCSSCCT-TSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCC--CEECTTTTTTCTTCCEEECTTCCC
T ss_pred             eEccCCCcccCCC-CCCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcc--cccCHHHhhchhhcCEeECCCCcc
Confidence            3445556677776 345789999999999977665 33 899999999999998  777666668999999999999999


Q ss_pred             CcC-CcccccCCCCcEEEccCCCCCC--cccccCCCCcCEEEccCCCCC--CCchhhcCCCCCCEEeccCCCCccccchh
Q 037969          213 FSL-PSSIGLLANLQTLCLDQSMLGD--IAIIGKLKNLEILSFLNSDIV--RLPGELGQLTKLRLLDLTDCLQLKFIVPN  287 (300)
Q Consensus       213 ~~l-p~~i~~l~~L~~L~l~~~~l~~--p~~~~~l~~L~~L~l~~~~l~--~lp~~~~~l~~L~~L~l~~~~~l~~lp~~  287 (300)
                      +.+ |..++.+++|++|++++|.+..  +..++.+++|++|++++|.++  .+|..++++++|++|++++|. +..+++.
T Consensus        93 ~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~-l~~~~~~  171 (606)
T 3vq2_A           93 QSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNY-IQTITVN  171 (606)
T ss_dssp             CCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSC-CCEECTT
T ss_pred             cccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCc-ceecChh
Confidence            997 8889999999999999999987  478999999999999999887  589999999999999999998 6666544


Q ss_pred             hhcCCCCCC
Q 037969          288 VLSSFTRLE  296 (300)
Q Consensus       288 ~l~~L~~L~  296 (300)
                      .++.+++|+
T Consensus       172 ~~~~l~~L~  180 (606)
T 3vq2_A          172 DLQFLRENP  180 (606)
T ss_dssp             TTHHHHHCT
T ss_pred             hhhhhhccc
Confidence            366655554

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.69  E-value=2.8e-16  Score=140.85  Aligned_cols=36  Identities=17%  Similarity=0.346  Sum_probs=16.7

Q ss_pred             cCCccEEEeecCCCcccCcc-c-cCCCccEEecccCcc
Q 037969          151 LKKCSAISLLNSSIHEVSEE-F-ECLQLEFLHISQNTF  186 (300)
Q Consensus       151 ~~~l~~L~l~~~~~~~~~~~-~-~~~~L~~L~l~~~~~  186 (300)
                      +++++.|++++|.+..++.. + .+++|+.|++++|.+
T Consensus       111 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i  148 (440)
T 3zyj_A          111 LANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPI  148 (440)
T ss_dssp             CSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCC
T ss_pred             CccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcc
Confidence            34444555555544444431 1 445555555555444

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.69  E-value=5e-16  Score=126.22  Aligned_cols=142  Identities=23%  Similarity=0.344  Sum_probs=125.2

Q ss_pred             cEEEeecCCCcccCccccCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCcC-CcccccCCCCcEEEccCC
Q 037969          155 SAISLLNSSIHEVSEEFECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSL-PSSIGLLANLQTLCLDQS  233 (300)
Q Consensus       155 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~~  233 (300)
                      +.++..++.+..+|.... ++++.|++.+|.+  ..++...|..+++|++|++++|.++.+ |..+..+++|++|++++|
T Consensus        14 ~~v~c~~~~l~~iP~~l~-~~l~~L~l~~n~i--~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N   90 (220)
T 2v9t_B           14 NIVDCRGKGLTEIPTNLP-ETITEIRLEQNTI--KVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN   90 (220)
T ss_dssp             TEEECTTSCCSSCCSSCC-TTCCEEECCSSCC--CEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCcCcCCCccC-cCCCEEECCCCcC--CCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence            567888888888887554 7899999999999  788876678999999999999999986 788999999999999999


Q ss_pred             CCCC-c-ccccCCCCcCEEEccCCCCCCC-chhhcCCCCCCEEeccCCCCccccchhhhcCCCCCCeeeC
Q 037969          234 MLGD-I-AIIGKLKNLEILSFLNSDIVRL-PGELGQLTKLRLLDLTDCLQLKFIVPNVLSSFTRLEELYM  300 (300)
Q Consensus       234 ~l~~-p-~~~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l  300 (300)
                      .+.. | ..+..+++|++|++++|.++.+ |..+..+++|++|++++|. +..+|...+..+++|++|++
T Consensus        91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L  159 (220)
T 2v9t_B           91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNK-LQTIAKGTFSPLRAIQTMHL  159 (220)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEEC
T ss_pred             cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCc-CCEECHHHHhCCCCCCEEEe
Confidence            9998 5 4468899999999999999977 4568999999999999999 78888766899999999875

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.68  E-value=2e-16  Score=132.95  Aligned_cols=149  Identities=18%  Similarity=0.250  Sum_probs=107.7

Q ss_pred             cccCCccEEEeecCCCcccCc-cc-cCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCc--CCcccccCCC
Q 037969          149 DALKKCSAISLLNSSIHEVSE-EF-ECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFS--LPSSIGLLAN  224 (300)
Q Consensus       149 ~~~~~l~~L~l~~~~~~~~~~-~~-~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~--lp~~i~~l~~  224 (300)
                      ..+++++.|++++|.+..++. .+ .+++|+.|++.+|.+  ..++...+..+++|++|++++|.++.  +|..++.+++
T Consensus        73 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l--~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~  150 (276)
T 2z62_A           73 QSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNL--ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTN  150 (276)
T ss_dssp             TTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCC--CCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTT
T ss_pred             cCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCc--cccCchhcccCCCCCEEECcCCccceecCchhhccCCC
Confidence            445667777777777755542 23 677777777777777  55555334677777777777777776  5677777777


Q ss_pred             CcEEEccCCCCCC--cccccCCCCcC----EEEccCCCCCCCchhhcCCCCCCEEeccCCCCccccchhhhcCCCCCCee
Q 037969          225 LQTLCLDQSMLGD--IAIIGKLKNLE----ILSFLNSDIVRLPGELGQLTKLRLLDLTDCLQLKFIVPNVLSSFTRLEEL  298 (300)
Q Consensus       225 L~~L~l~~~~l~~--p~~~~~l~~L~----~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L  298 (300)
                      |++|++++|.+..  +..+..+++|+    .|++++|.++.+|.......+|+.|++++|. ++.+|...++.+++|++|
T Consensus       151 L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L  229 (276)
T 2z62_A          151 LEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQ-LKSVPDGIFDRLTSLQKI  229 (276)
T ss_dssp             CCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSC-CSCCCTTTTTTCCSCCEE
T ss_pred             CCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCCCcccEEECCCCc-eeecCHhHhcccccccEE
Confidence            8888887777766  34555555555    7777777777777666666689999999998 788887767889999988


Q ss_pred             eC
Q 037969          299 YM  300 (300)
Q Consensus       299 ~l  300 (300)
                      ++
T Consensus       230 ~l  231 (276)
T 2z62_A          230 WL  231 (276)
T ss_dssp             EC
T ss_pred             Ec
Confidence            75

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.68  E-value=2.8e-16  Score=134.59  Aligned_cols=97  Identities=22%  Similarity=0.296  Sum_probs=40.9

Q ss_pred             cccEEEeeCCcCCc-CCcccccCCCCcEEEccCCCCCC--cccccCCCCcCEEEccCCCCCCCchhhcCCCCCCEEeccC
Q 037969          201 TLRVIDLTRMRLFS-LPSSIGLLANLQTLCLDQSMLGD--IAIIGKLKNLEILSFLNSDIVRLPGELGQLTKLRLLDLTD  277 (300)
Q Consensus       201 ~L~~L~l~~~~~~~-lp~~i~~l~~L~~L~l~~~~l~~--p~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~  277 (300)
                      .|++|++++|.++. .|..++.+. |++|++++|.+..  |..++.+++|++|++++|.++..++.+..+++|++|++++
T Consensus       175 ~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~  253 (313)
T 1ogq_A          175 LFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRN  253 (313)
T ss_dssp             TCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCS
T ss_pred             cCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcC
Confidence            34444444443332 333333333 3333333333332  3334444444444444444443333344444555555555


Q ss_pred             CCCccccchhhhcCCCCCCeee
Q 037969          278 CLQLKFIVPNVLSSFTRLEELY  299 (300)
Q Consensus       278 ~~~l~~lp~~~l~~L~~L~~L~  299 (300)
                      |...+.+|.. ++.+++|++|+
T Consensus       254 N~l~~~~p~~-l~~l~~L~~L~  274 (313)
T 1ogq_A          254 NRIYGTLPQG-LTQLKFLHSLN  274 (313)
T ss_dssp             SCCEECCCGG-GGGCTTCCEEE
T ss_pred             CcccCcCChH-HhcCcCCCEEE
Confidence            5432244443 44455555444

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.68  E-value=9.6e-16  Score=123.33  Aligned_cols=141  Identities=23%  Similarity=0.387  Sum_probs=97.3

Q ss_pred             EEEeecCCCcccCccccCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCcCCcc-cccCCCCcEEEccCCC
Q 037969          156 AISLLNSSIHEVSEEFECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPSS-IGLLANLQTLCLDQSM  234 (300)
Q Consensus       156 ~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~-i~~l~~L~~L~l~~~~  234 (300)
                      .+...++.+..+|... .++++.|++.+|.+  ..++...+..+++|++|++++|.++.+|.. +..+++|++|++++|.
T Consensus        11 ~v~c~~~~l~~~p~~~-~~~l~~L~l~~n~l--~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~   87 (208)
T 2o6s_A           11 TVECYSQGRTSVPTGI-PAQTTYLDLETNSL--KSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ   87 (208)
T ss_dssp             EEECCSSCCSSCCSCC-CTTCSEEECCSSCC--CCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             EEEecCCCccCCCCCC-CCCCcEEEcCCCcc--CcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc
Confidence            4555666666666433 35677777777777  666666566777777777777777776543 5677777777777777


Q ss_pred             CCC-c-ccccCCCCcCEEEccCCCCCCCchh-hcCCCCCCEEeccCCCCccccchhhhcCCCCCCeeeC
Q 037969          235 LGD-I-AIIGKLKNLEILSFLNSDIVRLPGE-LGQLTKLRLLDLTDCLQLKFIVPNVLSSFTRLEELYM  300 (300)
Q Consensus       235 l~~-p-~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l  300 (300)
                      +.. + ..++.+++|++|++++|.++.+|.. +.++++|++|++++|. +..+|...+..+++|++|++
T Consensus        88 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l  155 (208)
T 2o6s_A           88 LQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYIWL  155 (208)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEEC
T ss_pred             CCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCc-cceeCHHHhccCCCccEEEe
Confidence            776 3 3456777777777777777766654 5677777777777776 56666655677777777764

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.68  E-value=1.4e-16  Score=131.13  Aligned_cols=153  Identities=14%  Similarity=0.241  Sum_probs=130.8

Q ss_pred             cccCCCccccCCccEEEeecCCCcccCc-cc-cCCCccEEecccCc-cccccCchhHHhcCCcccEEEeeC-CcCCcCC-
Q 037969          142 VWEWPDEDALKKCSAISLLNSSIHEVSE-EF-ECLQLEFLHISQNT-FVEVNIPDNIFKGMKTLRVIDLTR-MRLFSLP-  216 (300)
Q Consensus       142 ~~~~~~~~~~~~l~~L~l~~~~~~~~~~-~~-~~~~L~~L~l~~~~-~~~~~l~~~~~~~l~~L~~L~l~~-~~~~~lp-  216 (300)
                      +..+|.  ...+++.|++++|.+..++. .+ .+++|+.|++.+|. +  ..+++..|.++++|++|++++ |.++.+| 
T Consensus        23 l~~ip~--~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l--~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~   98 (239)
T 2xwt_C           23 IQRIPS--LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTL--QQLESHSFYNLSKVTHIEIRNTRNLTYIDP   98 (239)
T ss_dssp             CSSCCC--CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSC--CEECTTTEESCTTCCEEEEEEETTCCEECT
T ss_pred             ccccCC--CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCc--ceeCHhHcCCCcCCcEEECCCCCCeeEcCH
Confidence            666666  55689999999999988876 33 89999999999997 7  788876678999999999998 9999976 


Q ss_pred             cccccCCCCcEEEccCCCCCCcccccCCCCcC---EEEccCC-CCCCCchh-hcCCCCCC-EEeccCCCCccccchhhhc
Q 037969          217 SSIGLLANLQTLCLDQSMLGDIAIIGKLKNLE---ILSFLNS-DIVRLPGE-LGQLTKLR-LLDLTDCLQLKFIVPNVLS  290 (300)
Q Consensus       217 ~~i~~l~~L~~L~l~~~~l~~p~~~~~l~~L~---~L~l~~~-~l~~lp~~-~~~l~~L~-~L~l~~~~~l~~lp~~~l~  290 (300)
                      ..+..+++|++|++++|.+...+.++.+++|+   +|++++| .++.+|.. +..+++|+ +|++++|. +..+|...+.
T Consensus        99 ~~f~~l~~L~~L~l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~-l~~i~~~~~~  177 (239)
T 2xwt_C           99 DALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNG-FTSVQGYAFN  177 (239)
T ss_dssp             TSEECCTTCCEEEEEEECCCSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCC-CCEECTTTTT
T ss_pred             HHhCCCCCCCEEeCCCCCCccccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCC-CcccCHhhcC
Confidence            56889999999999999998833388888888   9999999 99988875 88999999 99999998 7799987444


Q ss_pred             CCCCCCeeeC
Q 037969          291 SFTRLEELYM  300 (300)
Q Consensus       291 ~L~~L~~L~l  300 (300)
                      . ++|++|++
T Consensus       178 ~-~~L~~L~L  186 (239)
T 2xwt_C          178 G-TKLDAVYL  186 (239)
T ss_dssp             T-CEEEEEEC
T ss_pred             C-CCCCEEEc
Confidence            4 78888865

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.68  E-value=2.2e-16  Score=135.29  Aligned_cols=148  Identities=19%  Similarity=0.295  Sum_probs=107.6

Q ss_pred             cccCCccEEEeec-CCC-cccCccc-cCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCC-cCCcccccCCC
Q 037969          149 DALKKCSAISLLN-SSI-HEVSEEF-ECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLF-SLPSSIGLLAN  224 (300)
Q Consensus       149 ~~~~~l~~L~l~~-~~~-~~~~~~~-~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~-~lp~~i~~l~~  224 (300)
                      ..+++++.|++++ +.+ ..+|..+ .+++|++|++++|.+ .+.+|..+ ..+++|++|++++|.++ .+|..++.+++
T Consensus        73 ~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l-~~~~p~~~-~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~  150 (313)
T 1ogq_A           73 ANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNV-SGAIPDFL-SQIKTLVTLDFSYNALSGTLPPSISSLPN  150 (313)
T ss_dssp             GGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECC-EEECCGGG-GGCTTCCEEECCSSEEESCCCGGGGGCTT
T ss_pred             hCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCee-CCcCCHHH-hCCCCCCEEeCCCCccCCcCChHHhcCCC
Confidence            5667778888874 666 4566555 778888888887777 23566554 77788888888888777 36777788888


Q ss_pred             CcEEEccCCCCCC--cccccCCC-CcCEEEccCCCCC-CCchhhcCCCCCCEEeccCCCCccccchhhhcCCCCCCeeeC
Q 037969          225 LQTLCLDQSMLGD--IAIIGKLK-NLEILSFLNSDIV-RLPGELGQLTKLRLLDLTDCLQLKFIVPNVLSSFTRLEELYM  300 (300)
Q Consensus       225 L~~L~l~~~~l~~--p~~~~~l~-~L~~L~l~~~~l~-~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l  300 (300)
                      |++|++++|.+..  |..++.++ +|++|++++|.++ .+|..++.++ |++|++++|...+..|. .++.+++|++|++
T Consensus       151 L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~L  228 (313)
T 1ogq_A          151 LVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASV-LFGSDKNTQKIHL  228 (313)
T ss_dssp             CCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGG-GCCTTSCCSEEEC
T ss_pred             CCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCH-HHhcCCCCCEEEC
Confidence            8888888887763  67777777 7888888888776 6777777776 88888888873333444 4788888888865

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.68  E-value=5.4e-16  Score=139.05  Aligned_cols=163  Identities=20%  Similarity=0.276  Sum_probs=139.0

Q ss_pred             EEEeccccccCCC--ccccCCccEEEeecCCCcccCccc--cCCCccEEecccCccccccCchhHHhcCCcccEEEeeCC
Q 037969          135 FLVRNEVVWEWPD--EDALKKCSAISLLNSSIHEVSEEF--ECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRM  210 (300)
Q Consensus       135 ~~~~~~~~~~~~~--~~~~~~l~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~  210 (300)
                      ..+.++.+..++.  ...+++++.|++++|.+..++...  .+++|+.|++.+|... ..++...|.++++|++|++++|
T Consensus       117 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l-~~i~~~~~~~l~~L~~L~L~~n  195 (440)
T 3zyj_A          117 LELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRL-SYISEGAFEGLSNLRYLNLAMC  195 (440)
T ss_dssp             EECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTC-CEECTTTTTTCSSCCEEECTTS
T ss_pred             EECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCc-ceeCcchhhcccccCeecCCCC
Confidence            4455556666654  366789999999999998777633  8999999999985442 6777777799999999999999


Q ss_pred             cCCcCCcccccCCCCcEEEccCCCCCC--cccccCCCCcCEEEccCCCCCCCc-hhhcCCCCCCEEeccCCCCccccchh
Q 037969          211 RLFSLPSSIGLLANLQTLCLDQSMLGD--IAIIGKLKNLEILSFLNSDIVRLP-GELGQLTKLRLLDLTDCLQLKFIVPN  287 (300)
Q Consensus       211 ~~~~lp~~i~~l~~L~~L~l~~~~l~~--p~~~~~l~~L~~L~l~~~~l~~lp-~~~~~l~~L~~L~l~~~~~l~~lp~~  287 (300)
                      .++.+|. +..+++|++|++++|.+..  |..+..+++|+.|++++|.++.++ ..+.++++|++|++++|. +..+|..
T Consensus       196 ~l~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~  273 (440)
T 3zyj_A          196 NLREIPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNN-LTLLPHD  273 (440)
T ss_dssp             CCSSCCC-CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSC-CCCCCTT
T ss_pred             cCccccc-cCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCC-CCccChh
Confidence            9999985 8899999999999999987  688999999999999999999664 458899999999999998 8888887


Q ss_pred             hhcCCCCCCeeeC
Q 037969          288 VLSSFTRLEELYM  300 (300)
Q Consensus       288 ~l~~L~~L~~L~l  300 (300)
                      .+..+++|+.|+|
T Consensus       274 ~~~~l~~L~~L~L  286 (440)
T 3zyj_A          274 LFTPLHHLERIHL  286 (440)
T ss_dssp             TTSSCTTCCEEEC
T ss_pred             HhccccCCCEEEc
Confidence            7899999999875

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.68  E-value=7.7e-16  Score=125.09  Aligned_cols=142  Identities=18%  Similarity=0.329  Sum_probs=122.7

Q ss_pred             cEEEeecCCCcccCccccCCCccEEecccCccccccC-chhHHhcCCcccEEEeeCCcCCcCC-cccccCCCCcEEEccC
Q 037969          155 SAISLLNSSIHEVSEEFECLQLEFLHISQNTFVEVNI-PDNIFKGMKTLRVIDLTRMRLFSLP-SSIGLLANLQTLCLDQ  232 (300)
Q Consensus       155 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l-~~~~~~~l~~L~~L~l~~~~~~~lp-~~i~~l~~L~~L~l~~  232 (300)
                      +.++++++.+..+|..+ .+.++.|++++|.+  ..+ +..+|..+++|++|++++|.++.++ ..++.+++|++|++++
T Consensus        14 ~~l~~s~n~l~~iP~~~-~~~~~~L~L~~N~l--~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   90 (220)
T 2v70_A           14 TTVDCSNQKLNKIPEHI-PQYTAELRLNNNEF--TVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS   90 (220)
T ss_dssp             TEEECCSSCCSSCCSCC-CTTCSEEECCSSCC--CEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEeEeCCCCcccCccCC-CCCCCEEEcCCCcC--CccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence            57899999998888754 34678999999999  666 4455689999999999999999975 4799999999999999


Q ss_pred             CCCCC--cccccCCCCcCEEEccCCCCCCC-chhhcCCCCCCEEeccCCCCccccchhhhcCCCCCCeeeC
Q 037969          233 SMLGD--IAIIGKLKNLEILSFLNSDIVRL-PGELGQLTKLRLLDLTDCLQLKFIVPNVLSSFTRLEELYM  300 (300)
Q Consensus       233 ~~l~~--p~~~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l  300 (300)
                      |.+..  +..+..+++|++|++++|.++.+ |..+..+++|++|++++|. +..+++..+..+++|++|++
T Consensus        91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L  160 (220)
T 2v70_A           91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQ-ITTVAPGAFDTLHSLSTLNL  160 (220)
T ss_dssp             SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSC-CCCBCTTTTTTCTTCCEEEC
T ss_pred             CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCc-CCEECHHHhcCCCCCCEEEe
Confidence            99988  45689999999999999999977 5678999999999999999 77775555999999999875

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.68  E-value=1.5e-16  Score=138.59  Aligned_cols=148  Identities=22%  Similarity=0.221  Sum_probs=73.5

Q ss_pred             cccCCccEEEeecCCCcccCc-cc-cCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCcCCc--ccccCCC
Q 037969          149 DALKKCSAISLLNSSIHEVSE-EF-ECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPS--SIGLLAN  224 (300)
Q Consensus       149 ~~~~~l~~L~l~~~~~~~~~~-~~-~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp~--~i~~l~~  224 (300)
                      ..+++++.|++++|.+..++. .+ .+++|++|++++|.+  ..+|...+..+++|++|++++|.++.+|.  .++.+++
T Consensus        73 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l--~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~  150 (353)
T 2z80_A           73 QRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYL--SNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTK  150 (353)
T ss_dssp             TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC--SSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTT
T ss_pred             ccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcC--CcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCC
Confidence            334455555555555533322 12 455555555555555  44554444555555555555555555443  3455555


Q ss_pred             CcEEEccCCC-CCC--cccccCCCCcCEEEccCCCCCCC-chhhcCCCCCCEEeccCCCCccccchhhhcCCCCCCeee
Q 037969          225 LQTLCLDQSM-LGD--IAIIGKLKNLEILSFLNSDIVRL-PGELGQLTKLRLLDLTDCLQLKFIVPNVLSSFTRLEELY  299 (300)
Q Consensus       225 L~~L~l~~~~-l~~--p~~~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~  299 (300)
                      |++|++++|. +..  +..++.+++|++|++++|.++.+ |..++++++|++|++++|. ++.+|...++.+++|++|+
T Consensus       151 L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~L~~L~  228 (353)
T 2z80_A          151 LQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQ-HILLLEIFVDVTSSVECLE  228 (353)
T ss_dssp             CCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSC-STTHHHHHHHHTTTEEEEE
T ss_pred             CcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCc-cccchhhhhhhcccccEEE
Confidence            5555555552 333  23455555555555555555433 4445555555555555555 4445544334455555554

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.67  E-value=1.8e-16  Score=135.25  Aligned_cols=162  Identities=22%  Similarity=0.263  Sum_probs=127.4

Q ss_pred             EEeccccccCCC-ccccCCccEEEeecCCCcccCc--c-ccCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCc
Q 037969          136 LVRNEVVWEWPD-EDALKKCSAISLLNSSIHEVSE--E-FECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMR  211 (300)
Q Consensus       136 ~~~~~~~~~~~~-~~~~~~l~~L~l~~~~~~~~~~--~-~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~  211 (300)
                      .+..+.+..++. ...+++++.|++++|.+..++.  . ..+++|+.|++.+|.+  ...+...+..+++|++|++++|.
T Consensus        84 ~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l--~~~~~~~~~~l~~L~~L~l~~n~  161 (306)
T 2z66_A           84 DLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT--RVAFNGIFNGLSSLEVLKMAGNS  161 (306)
T ss_dssp             ECCSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCC--EECSTTTTTTCTTCCEEECTTCE
T ss_pred             ECCCCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcC--CccchhhcccCcCCCEEECCCCc
Confidence            344444444443 2567889999999998866654  2 3889999999999988  55555556888999999999999


Q ss_pred             CCc--CCcccccCCCCcEEEccCCCCCC--cccccCCCCcCEEEccCCCCCCCch-hhcCCCCCCEEeccCCCCccccch
Q 037969          212 LFS--LPSSIGLLANLQTLCLDQSMLGD--IAIIGKLKNLEILSFLNSDIVRLPG-ELGQLTKLRLLDLTDCLQLKFIVP  286 (300)
Q Consensus       212 ~~~--lp~~i~~l~~L~~L~l~~~~l~~--p~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~l~~lp~  286 (300)
                      ++.  +|..++.+++|++|++++|.+..  |..+..+++|++|++++|.++.+|. .+..+++|++|++++|...+..|.
T Consensus       162 l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~  241 (306)
T 2z66_A          162 FQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQ  241 (306)
T ss_dssp             EGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSS
T ss_pred             cccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHH
Confidence            886  68889999999999999999887  5778899999999999999987765 578899999999999984444444


Q ss_pred             hhhcCC-CCCCeeeC
Q 037969          287 NVLSSF-TRLEELYM  300 (300)
Q Consensus       287 ~~l~~L-~~L~~L~l  300 (300)
                      . +..+ ++|++|++
T Consensus       242 ~-~~~~~~~L~~L~L  255 (306)
T 2z66_A          242 E-LQHFPSSLAFLNL  255 (306)
T ss_dssp             S-CCCCCTTCCEEEC
T ss_pred             H-HHhhhccCCEEEc
Confidence            4 7777 48988875

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.67  E-value=2.7e-16  Score=122.26  Aligned_cols=131  Identities=24%  Similarity=0.298  Sum_probs=115.1

Q ss_pred             cCCccEEEeecCCCc--ccCccc-cCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCc-CCcccccCCCCc
Q 037969          151 LKKCSAISLLNSSIH--EVSEEF-ECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFS-LPSSIGLLANLQ  226 (300)
Q Consensus       151 ~~~l~~L~l~~~~~~--~~~~~~-~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~-lp~~i~~l~~L~  226 (300)
                      .++++.|++++|.+.  .+|..+ .+++|+.|++.+|.+  ..+ .. +..+++|++|++++|.++. +|..++.+++|+
T Consensus        23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l--~~~-~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~   98 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGL--ISV-SN-LPKLPKLKKLELSENRIFGGLDMLAEKLPNLT   98 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCC--CCC-SS-CCCCSSCCEEEEESCCCCSCCCHHHHHCTTCC
T ss_pred             cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCC--CCh-hh-hccCCCCCEEECcCCcCchHHHHHHhhCCCCC
Confidence            467999999999987  888875 899999999999998  666 33 4889999999999999998 777788899999


Q ss_pred             EEEccCCCCCC-c--ccccCCCCcCEEEccCCCCCCCch----hhcCCCCCCEEeccCCCCccccch
Q 037969          227 TLCLDQSMLGD-I--AIIGKLKNLEILSFLNSDIVRLPG----ELGQLTKLRLLDLTDCLQLKFIVP  286 (300)
Q Consensus       227 ~L~l~~~~l~~-p--~~~~~l~~L~~L~l~~~~l~~lp~----~~~~l~~L~~L~l~~~~~l~~lp~  286 (300)
                      +|++++|.+.. +  ..+..+++|++|++++|.++.+|.    .+..+++|++|++++|. ...+|.
T Consensus        99 ~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~  164 (168)
T 2ell_A           99 HLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRE-DQEAPD  164 (168)
T ss_dssp             EEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETT-SCBCCS
T ss_pred             EEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCC-hhhccc
Confidence            99999999988 4  788999999999999999998887    78899999999999998 677765

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.67  E-value=7.1e-16  Score=138.72  Aligned_cols=163  Identities=18%  Similarity=0.248  Sum_probs=138.5

Q ss_pred             EEEeccccccCCCc--cccCCccEEEeecCCCcccCccc--cCCCccEEecccCccccccCchhHHhcCCcccEEEeeCC
Q 037969          135 FLVRNEVVWEWPDE--DALKKCSAISLLNSSIHEVSEEF--ECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRM  210 (300)
Q Consensus       135 ~~~~~~~~~~~~~~--~~~~~l~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~  210 (300)
                      ..+.++.+..++..  ..+++++.|++++|.+..++...  .+++|+.|++.+|..+ ..++...|..+++|++|++++|
T Consensus       128 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l-~~i~~~~~~~l~~L~~L~L~~n  206 (452)
T 3zyi_A          128 LELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKL-EYISEGAFEGLFNLKYLNLGMC  206 (452)
T ss_dssp             EECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTC-CEECTTTTTTCTTCCEEECTTS
T ss_pred             EECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCc-cccChhhccCCCCCCEEECCCC
Confidence            44455556555543  56889999999999998777633  8999999999985442 7778777789999999999999


Q ss_pred             cCCcCCcccccCCCCcEEEccCCCCCC--cccccCCCCcCEEEccCCCCCCC-chhhcCCCCCCEEeccCCCCccccchh
Q 037969          211 RLFSLPSSIGLLANLQTLCLDQSMLGD--IAIIGKLKNLEILSFLNSDIVRL-PGELGQLTKLRLLDLTDCLQLKFIVPN  287 (300)
Q Consensus       211 ~~~~lp~~i~~l~~L~~L~l~~~~l~~--p~~~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l~~~~~l~~lp~~  287 (300)
                      .++.+|. +..+++|++|++++|.+..  |..+..+++|+.|++++|.++.+ |..+..+++|+.|++++|. +..+|..
T Consensus       207 ~l~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~  284 (452)
T 3zyi_A          207 NIKDMPN-LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNN-LSSLPHD  284 (452)
T ss_dssp             CCSSCCC-CTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CSCCCTT
T ss_pred             ccccccc-ccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCc-CCccChH
Confidence            9999874 8899999999999999987  68899999999999999999866 5568999999999999998 8888887


Q ss_pred             hhcCCCCCCeeeC
Q 037969          288 VLSSFTRLEELYM  300 (300)
Q Consensus       288 ~l~~L~~L~~L~l  300 (300)
                      .+..+++|++|++
T Consensus       285 ~~~~l~~L~~L~L  297 (452)
T 3zyi_A          285 LFTPLRYLVELHL  297 (452)
T ss_dssp             SSTTCTTCCEEEC
T ss_pred             HhccccCCCEEEc
Confidence            7889999999875

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.67  E-value=9.8e-16  Score=135.13  Aligned_cols=87  Identities=17%  Similarity=0.263  Sum_probs=59.5

Q ss_pred             cccCCccEEEeecCCCcccCcc-c-cCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCcC-CcccccCCCC
Q 037969          149 DALKKCSAISLLNSSIHEVSEE-F-ECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSL-PSSIGLLANL  225 (300)
Q Consensus       149 ~~~~~l~~L~l~~~~~~~~~~~-~-~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L  225 (300)
                      ..+++++.|++++|.+..++.. + .+++|+.|++.+|.+  ..+|..+|..+++|++|++++|.++.+ |..++.+++|
T Consensus        90 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l--~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  167 (390)
T 3o6n_A           90 AYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDL--SSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSL  167 (390)
T ss_dssp             TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC--CCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTC
T ss_pred             cCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCcc--CcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCC
Confidence            4566677777777777555432 2 677777777777777  677766666777777777777777765 4456777777


Q ss_pred             cEEEccCCCCCC
Q 037969          226 QTLCLDQSMLGD  237 (300)
Q Consensus       226 ~~L~l~~~~l~~  237 (300)
                      ++|++++|.+..
T Consensus       168 ~~L~l~~n~l~~  179 (390)
T 3o6n_A          168 QNLQLSSNRLTH  179 (390)
T ss_dssp             CEEECCSSCCSB
T ss_pred             CEEECCCCcCCc
Confidence            777777776543

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.67  E-value=1.1e-16  Score=139.26  Aligned_cols=161  Identities=22%  Similarity=0.307  Sum_probs=132.9

Q ss_pred             EEeccccccCCCccccCCccEEEeecCCCcccCc-cc-cCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCC
Q 037969          136 LVRNEVVWEWPDEDALKKCSAISLLNSSIHEVSE-EF-ECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLF  213 (300)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~-~~-~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~  213 (300)
                      ...+..+..+|. ...++++.|++++|.+..++. .+ .+++|+.|++++|.+  ..+++..|.++++|++|++++|.++
T Consensus        37 ~~~~~~l~~iP~-~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l--~~~~~~~~~~l~~L~~L~Ls~n~l~  113 (353)
T 2z80_A           37 KGSSGSLNSIPS-GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGI--NTIEEDSFSSLGSLEHLDLSYNYLS  113 (353)
T ss_dssp             ECCSTTCSSCCT-TCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCC--CEECTTTTTTCTTCCEEECCSSCCS
T ss_pred             eCCCCCcccccc-cccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCcc--CccCHhhcCCCCCCCEEECCCCcCC
Confidence            344555666765 345689999999999987776 33 899999999999998  6776655689999999999999999


Q ss_pred             cCCcc-cccCCCCcEEEccCCCCCC-cc--cccCCCCcCEEEccCC-CCCCCc-hhhcCCCCCCEEeccCCCCccccchh
Q 037969          214 SLPSS-IGLLANLQTLCLDQSMLGD-IA--IIGKLKNLEILSFLNS-DIVRLP-GELGQLTKLRLLDLTDCLQLKFIVPN  287 (300)
Q Consensus       214 ~lp~~-i~~l~~L~~L~l~~~~l~~-p~--~~~~l~~L~~L~l~~~-~l~~lp-~~~~~l~~L~~L~l~~~~~l~~lp~~  287 (300)
                      .+|.. ++.+++|++|++++|.+.. |.  .+..+++|++|++++| .+..++ ..++++++|++|++++|. +..+++.
T Consensus       114 ~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~  192 (353)
T 2z80_A          114 NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD-LQSYEPK  192 (353)
T ss_dssp             SCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT-CCEECTT
T ss_pred             cCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCC-cCccCHH
Confidence            98766 8899999999999999888 54  6889999999999999 577664 568999999999999998 5555333


Q ss_pred             hhcCCCCCCeeeC
Q 037969          288 VLSSFTRLEELYM  300 (300)
Q Consensus       288 ~l~~L~~L~~L~l  300 (300)
                      .++.+++|++|++
T Consensus       193 ~l~~l~~L~~L~l  205 (353)
T 2z80_A          193 SLKSIQNVSHLIL  205 (353)
T ss_dssp             TTTTCSEEEEEEE
T ss_pred             HHhccccCCeecC
Confidence            4899999998864

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.67  E-value=5.1e-16  Score=143.99  Aligned_cols=144  Identities=29%  Similarity=0.379  Sum_probs=130.7

Q ss_pred             ccccCCccEEEeecCCCcccCccccCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCcCCcccccCCCCcE
Q 037969          148 EDALKKCSAISLLNSSIHEVSEEFECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPSSIGLLANLQT  227 (300)
Q Consensus       148 ~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~  227 (300)
                      ...+++++.|++.++.+..++....+++|+.|++++|.+  ..+++  +..+++|+.|+|++|.++.+| .++.+++|++
T Consensus        39 ~~~L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l--~~~~~--l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~  113 (605)
T 1m9s_A           39 QNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKL--TDIKP--LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKS  113 (605)
T ss_dssp             HHHHTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCC--CCCGG--GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCE
T ss_pred             hhcCCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCC--CCChh--hccCCCCCEEECcCCCCCCCh-hhccCCCCCE
Confidence            356788999999999998888777999999999999999  77777  589999999999999999877 6899999999


Q ss_pred             EEccCCCCCCcccccCCCCcCEEEccCCCCCCCchhhcCCCCCCEEeccCCCCccccchhhhcCCCCCCeeeC
Q 037969          228 LCLDQSMLGDIAIIGKLKNLEILSFLNSDIVRLPGELGQLTKLRLLDLTDCLQLKFIVPNVLSSFTRLEELYM  300 (300)
Q Consensus       228 L~l~~~~l~~p~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l  300 (300)
                      |++++|.+..++.+..+++|+.|++++|.++.+ ..++.+++|+.|++++|. +..+++  +..+++|+.|+|
T Consensus       114 L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~-l~~~~~--l~~l~~L~~L~L  182 (605)
T 1m9s_A          114 LSLEHNGISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQ-ISDIVP--LAGLTKLQNLYL  182 (605)
T ss_dssp             EECTTSCCCCCGGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSC-CCCCGG--GTTCTTCCEEEC
T ss_pred             EEecCCCCCCCccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCc-CCCchh--hccCCCCCEEEC
Confidence            999999999877799999999999999999988 579999999999999998 677766  889999999986

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.67  E-value=3.2e-16  Score=133.68  Aligned_cols=130  Identities=23%  Similarity=0.334  Sum_probs=69.4

Q ss_pred             cccCCccEEEeecCCCccc-Cccc-cCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCcC-CcccccCCCC
Q 037969          149 DALKKCSAISLLNSSIHEV-SEEF-ECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSL-PSSIGLLANL  225 (300)
Q Consensus       149 ~~~~~l~~L~l~~~~~~~~-~~~~-~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L  225 (300)
                      ..+++++.|++++|.+... +..+ .+++|+.|++.+|.+....+|..+ ..+++|++|++++|.++.+ |..++.+++|
T Consensus       123 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  201 (306)
T 2z66_A          123 LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIF-TELRNLTFLDLSQCQLEQLSPTAFNSLSSL  201 (306)
T ss_dssp             TTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCC-TTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred             hhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHH-hhCcCCCEEECCCCCcCCcCHHHhcCCCCC
Confidence            3445566666666655322 2222 555666666666655111233332 5556666666666666554 4455556666


Q ss_pred             cEEEccCCCCCC--cccccCCCCcCEEEccCCCCCC-CchhhcCCC-CCCEEeccCCC
Q 037969          226 QTLCLDQSMLGD--IAIIGKLKNLEILSFLNSDIVR-LPGELGQLT-KLRLLDLTDCL  279 (300)
Q Consensus       226 ~~L~l~~~~l~~--p~~~~~l~~L~~L~l~~~~l~~-lp~~~~~l~-~L~~L~l~~~~  279 (300)
                      ++|++++|.+..  +..+..+++|++|++++|.++. .|..+..++ +|++|++++|+
T Consensus       202 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~  259 (306)
T 2z66_A          202 QVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND  259 (306)
T ss_dssp             CEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred             CEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCC
Confidence            666666666554  2345556666666666665553 333455553 56666666655

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.67  E-value=6.3e-16  Score=139.94  Aligned_cols=146  Identities=23%  Similarity=0.317  Sum_probs=68.9

Q ss_pred             cCCccEEEeecCCCccc-Cccc-cCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCcC-CcccccCCCCcE
Q 037969          151 LKKCSAISLLNSSIHEV-SEEF-ECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSL-PSSIGLLANLQT  227 (300)
Q Consensus       151 ~~~l~~L~l~~~~~~~~-~~~~-~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L~~  227 (300)
                      +++++.|++++|.+..+ |..+ ++++|++|++.+|.+  ..+|...|.++++|++|++++|.++.+ |..+..+++|++
T Consensus        55 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l--~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~  132 (477)
T 2id5_A           55 FPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRL--KLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKS  132 (477)
T ss_dssp             CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC--CSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred             CCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcC--CccCcccccCCCCCCEEECCCCccccCChhHccccccCCE
Confidence            44444444444444332 2222 444455555544444  444444334444555555555544442 334444555555


Q ss_pred             EEccCCCCCC--cccccCCCCcCEEEccCCCCCCCchh-hcCCCCCCEEeccCCCCccccchhhhcCCCCCCeee
Q 037969          228 LCLDQSMLGD--IAIIGKLKNLEILSFLNSDIVRLPGE-LGQLTKLRLLDLTDCLQLKFIVPNVLSSFTRLEELY  299 (300)
Q Consensus       228 L~l~~~~l~~--p~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~  299 (300)
                      |++++|.+..  +..+..+++|++|++++|.++.+|.. +.++++|+.|++++|. +..++...+..+++|++|+
T Consensus       133 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~  206 (477)
T 2id5_A          133 LEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLN-INAIRDYSFKRLYRLKVLE  206 (477)
T ss_dssp             EEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCC-CCEECTTCSCSCTTCCEEE
T ss_pred             EECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCc-CcEeChhhcccCcccceee
Confidence            5555554443  33444555555555555555544432 4455555555555554 3334433355555555554

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.67  E-value=8.4e-16  Score=143.00  Aligned_cols=87  Identities=17%  Similarity=0.263  Sum_probs=59.3

Q ss_pred             cccCCccEEEeecCCCcccCcc-c-cCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCcC-CcccccCCCC
Q 037969          149 DALKKCSAISLLNSSIHEVSEE-F-ECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSL-PSSIGLLANL  225 (300)
Q Consensus       149 ~~~~~l~~L~l~~~~~~~~~~~-~-~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L  225 (300)
                      ..+++++.|++++|.+..++.. + .+++|++|++++|.+  ..+|..+|+.+++|++|++++|.++.+ |..++.+++|
T Consensus        96 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l--~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L  173 (597)
T 3oja_B           96 AYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDL--SSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSL  173 (597)
T ss_dssp             TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC--CCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTC
T ss_pred             cCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCC--CCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcC
Confidence            4566677777777777555543 2 677777777777777  667766666777777777777777765 3457777777


Q ss_pred             cEEEccCCCCCC
Q 037969          226 QTLCLDQSMLGD  237 (300)
Q Consensus       226 ~~L~l~~~~l~~  237 (300)
                      ++|++++|.+..
T Consensus       174 ~~L~L~~N~l~~  185 (597)
T 3oja_B          174 QNLQLSSNRLTH  185 (597)
T ss_dssp             CEEECTTSCCSB
T ss_pred             cEEECcCCCCCC
Confidence            777777776543

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.67  E-value=1.1e-15  Score=146.14  Aligned_cols=149  Identities=27%  Similarity=0.362  Sum_probs=98.9

Q ss_pred             cccCCccEEEeecCCCc-ccCccc-cCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCc-CCcc-------
Q 037969          149 DALKKCSAISLLNSSIH-EVSEEF-ECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFS-LPSS-------  218 (300)
Q Consensus       149 ~~~~~l~~L~l~~~~~~-~~~~~~-~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~-lp~~-------  218 (300)
                      ..+++++.|++++|.+. .+|..+ .+++|+.|++.+|.+ .+.+|..+ +.+++|++|++++|.+.. +|..       
T Consensus       487 ~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l-~~~~p~~l-~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~  564 (768)
T 3rgz_A          487 SNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSF-SGNIPAEL-GDCRSLIWLDLNTNLFNGTIPAAMFKQSGK  564 (768)
T ss_dssp             GGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCC-EEECCGGG-GGCTTCCEEECCSSEEESBCCGGGGTTTTC
T ss_pred             hcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcc-cCcCCHHH-cCCCCCCEEECCCCccCCcCChHHhcccch
Confidence            34555666666666663 455444 566666666666665 23555544 566666666666665542 3332       


Q ss_pred             ---------------------------------------------------------------cccCCCCcEEEccCCCC
Q 037969          219 ---------------------------------------------------------------IGLLANLQTLCLDQSML  235 (300)
Q Consensus       219 ---------------------------------------------------------------i~~l~~L~~L~l~~~~l  235 (300)
                                                                                     ++.+.+|++|++++|.+
T Consensus       565 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l  644 (768)
T 3rgz_A          565 IAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNML  644 (768)
T ss_dssp             BCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCC
T ss_pred             hhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcc
Confidence                                                                           22345677777777777


Q ss_pred             CC--cccccCCCCcCEEEccCCCCC-CCchhhcCCCCCCEEeccCCCCccccchhhhcCCCCCCeeeC
Q 037969          236 GD--IAIIGKLKNLEILSFLNSDIV-RLPGELGQLTKLRLLDLTDCLQLKFIVPNVLSSFTRLEELYM  300 (300)
Q Consensus       236 ~~--p~~~~~l~~L~~L~l~~~~l~-~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l  300 (300)
                      ..  |..++.+++|+.|++++|.++ .+|..++++++|+.|++++|...+.+|.. ++.+++|++|++
T Consensus       645 ~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~-l~~l~~L~~L~l  711 (768)
T 3rgz_A          645 SGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQA-MSALTMLTEIDL  711 (768)
T ss_dssp             BSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGG-GGGCCCCSEEEC
T ss_pred             cccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChH-HhCCCCCCEEEC
Confidence            64  677788888888888888777 77878888888888888888866677766 788888887765

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.67  E-value=8.2e-16  Score=122.74  Aligned_cols=141  Identities=16%  Similarity=0.159  Sum_probs=122.8

Q ss_pred             EEEeccccccCCCccccCCccEEEeecCCCcccCccccCCCccEEecccCcccccc-CchhHHhcCCcccEEEeeCCcCC
Q 037969          135 FLVRNEVVWEWPDEDALKKCSAISLLNSSIHEVSEEFECLQLEFLHISQNTFVEVN-IPDNIFKGMKTLRVIDLTRMRLF  213 (300)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-l~~~~~~~l~~L~~L~l~~~~~~  213 (300)
                      ..+.+..+..++....+++++.|++++|.+..++....+++|++|++.+|.+  .. .+..+ +.+++|++|++++|.++
T Consensus        49 L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l--~~~~~~~l-~~l~~L~~L~Ls~n~i~  125 (197)
T 4ezg_A           49 ITLANINVTDLTGIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDV--TSDKIPNL-SGLTSLTLLDISHSAHD  125 (197)
T ss_dssp             EEEESSCCSCCTTGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTC--BGGGSCCC-TTCTTCCEEECCSSBCB
T ss_pred             EeccCCCccChHHHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCcc--CcccChhh-cCCCCCCEEEecCCccC
Confidence            4556666777777788999999999999887777666999999999999998  43 45544 88999999999999999


Q ss_pred             c-CCcccccCCCCcEEEccCCC-CCCcccccCCCCcCEEEccCCCCCCCchhhcCCCCCCEEeccCCC
Q 037969          214 S-LPSSIGLLANLQTLCLDQSM-LGDIAIIGKLKNLEILSFLNSDIVRLPGELGQLTKLRLLDLTDCL  279 (300)
Q Consensus       214 ~-lp~~i~~l~~L~~L~l~~~~-l~~p~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~  279 (300)
                      . .|..++.+++|++|++++|. +...+.+..+++|++|++++|.++.++ .+..+++|++|++++|+
T Consensus       126 ~~~~~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~N~  192 (197)
T 4ezg_A          126 DSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQT  192 (197)
T ss_dssp             GGGHHHHTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECBC-
T ss_pred             cHhHHHHhhCCCCCEEEccCCCCccccHhhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEeeCcc
Confidence            7 67889999999999999998 777557999999999999999999987 78999999999999998

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.67  E-value=9.7e-16  Score=135.18  Aligned_cols=80  Identities=28%  Similarity=0.304  Sum_probs=47.6

Q ss_pred             cccCCCCcEEEccCCCCCC--cccccCCCCcCEEEccCCCCCCCchhhcCCCCCCEEeccCCCCccccchhhhcCCCCCC
Q 037969          219 IGLLANLQTLCLDQSMLGD--IAIIGKLKNLEILSFLNSDIVRLPGELGQLTKLRLLDLTDCLQLKFIVPNVLSSFTRLE  296 (300)
Q Consensus       219 i~~l~~L~~L~l~~~~l~~--p~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~l~~L~~L~  296 (300)
                      ++.+++|++|++++|.+..  |..++.+++|++|++++|.++.+|..+..+++|++|++++|. +..+|.. ++.+++|+
T Consensus       244 l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~-~~~l~~L~  321 (390)
T 3o6n_A          244 LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNH-LLHVERN-QPQFDRLE  321 (390)
T ss_dssp             GGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSC-CCCCGGG-HHHHTTCS
T ss_pred             HcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCCc-ceecCcc-ccccCcCC
Confidence            4445566666666666554  455666666666666666666666555566666666666665 5555554 55556666


Q ss_pred             eeeC
Q 037969          297 ELYM  300 (300)
Q Consensus       297 ~L~l  300 (300)
                      +|++
T Consensus       322 ~L~L  325 (390)
T 3o6n_A          322 NLYL  325 (390)
T ss_dssp             EEEC
T ss_pred             EEEC
Confidence            5543

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.67  E-value=2.9e-15  Score=129.95  Aligned_cols=154  Identities=21%  Similarity=0.274  Sum_probs=91.5

Q ss_pred             EEeccccccCCCccccCCccEEEeecCCCcccCccccCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCcC
Q 037969          136 LVRNEVVWEWPDEDALKKCSAISLLNSSIHEVSEEFECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSL  215 (300)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~l  215 (300)
                      .+.+..+..++....+++++.|++++|.+..++....+++|++|++.+|.+  ..++.  +..+++|++|++++|.++.+
T Consensus        50 ~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i--~~~~~--~~~l~~L~~L~l~~n~i~~~  125 (347)
T 4fmz_A           50 VVAGEKVASIQGIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKI--TDISA--LQNLTNLRELYLNEDNISDI  125 (347)
T ss_dssp             ECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCC--CCCGG--GTTCTTCSEEECTTSCCCCC
T ss_pred             EEeCCccccchhhhhcCCccEEEccCCccccchhhhcCCcCCEEEccCCcc--cCchH--HcCCCcCCEEECcCCcccCc
Confidence            344444555555556666777777777666666544667777777777766  55543  46667777777777766666


Q ss_pred             CcccccCCCCcEEEccCCCCCC-cccccCCCCcCEEEccCCCCCCCchhhcCCCCCCEEeccCCCCccccchhhhcCCCC
Q 037969          216 PSSIGLLANLQTLCLDQSMLGD-IAIIGKLKNLEILSFLNSDIVRLPGELGQLTKLRLLDLTDCLQLKFIVPNVLSSFTR  294 (300)
Q Consensus       216 p~~i~~l~~L~~L~l~~~~l~~-p~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~l~~L~~  294 (300)
                      |. +..+++|++|++++|.... ++.+..+++|++|++++|.+..++. ++.+++|++|++++|. +..++.  +..+++
T Consensus       126 ~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~-l~~~~~--~~~l~~  200 (347)
T 4fmz_A          126 SP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQ-IEDISP--LASLTS  200 (347)
T ss_dssp             GG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSC-CCCCGG--GGGCTT
T ss_pred             hh-hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCc-cccccc--ccCCCc
Confidence            55 5666666666666664333 4446666666666666665555543 5556666666666655 444443  344444


Q ss_pred             CCee
Q 037969          295 LEEL  298 (300)
Q Consensus       295 L~~L  298 (300)
                      |+.|
T Consensus       201 L~~L  204 (347)
T 4fmz_A          201 LHYF  204 (347)
T ss_dssp             CCEE
T ss_pred             ccee
Confidence            4444

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.66  E-value=3.7e-15  Score=129.28  Aligned_cols=125  Identities=20%  Similarity=0.293  Sum_probs=54.7

Q ss_pred             cccCCccEEEeecCCCcccCccccCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCcCCcccccCCCCcEE
Q 037969          149 DALKKCSAISLLNSSIHEVSEEFECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPSSIGLLANLQTL  228 (300)
Q Consensus       149 ~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L  228 (300)
                      ..+++++.|++++|.+..++....+++|+.|++.+|.+  ..++.  +..+++|++|++++|.++.+|. +..+++|++|
T Consensus       174 ~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l--~~~~~--~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L  248 (347)
T 4fmz_A          174 ANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQI--TDITP--VANMTRLNSLKIGNNKITDLSP-LANLSQLTWL  248 (347)
T ss_dssp             GGCTTCSEEECTTSCCCCCGGGGGCTTCCEEECCSSCC--CCCGG--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEE
T ss_pred             ccCCCCCEEEccCCcccccccccCCCccceeecccCCC--CCCch--hhcCCcCCEEEccCCccCCCcc-hhcCCCCCEE
Confidence            34445555555555544444333444444444444443  33322  2344444444444444444433 4444444444


Q ss_pred             EccCCCCCCcccccCCCCcCEEEccCCCCCCCchhhcCCCCCCEEeccCCC
Q 037969          229 CLDQSMLGDIAIIGKLKNLEILSFLNSDIVRLPGELGQLTKLRLLDLTDCL  279 (300)
Q Consensus       229 ~l~~~~l~~p~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~  279 (300)
                      ++++|.+...+.+..+++|++|++++|.++.+| .+..+++|+.|++++|.
T Consensus       249 ~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~L~~n~  298 (347)
T 4fmz_A          249 EIGTNQISDINAVKDLTKLKMLNVGSNQISDIS-VLNNLSQLNSLFLNNNQ  298 (347)
T ss_dssp             ECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSC
T ss_pred             ECCCCccCCChhHhcCCCcCEEEccCCccCCCh-hhcCCCCCCEEECcCCc
Confidence            444444444333444444444444444444432 23444444444444444

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.66  E-value=7.5e-16  Score=142.31  Aligned_cols=155  Identities=23%  Similarity=0.301  Sum_probs=128.4

Q ss_pred             EeccccccCCCccccCCccEEEeecCCCcccCc-c-ccCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCc
Q 037969          137 VRNEVVWEWPDEDALKKCSAISLLNSSIHEVSE-E-FECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFS  214 (300)
Q Consensus       137 ~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~-~-~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~  214 (300)
                      ..+..+..+|. ...++++.|++++|.+..++. . ..+++|++|++++|.+  ..+++..|.++++|++|++++|.++.
T Consensus        14 c~~~~l~~ip~-~l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i--~~i~~~~~~~l~~L~~L~L~~n~l~~   90 (570)
T 2z63_A           14 CMELNFYKIPD-NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEI--QTIEDGAYQSLSHLSTLILTGNPIQS   90 (570)
T ss_dssp             CCSSCCSSCCS-SSCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCC--CEECTTTTTTCTTCCEEECTTCCCCE
T ss_pred             eCCCCccccCC-CccccccEEEccCCccCccChhHhhCCCCceEEECCCCcC--CccCcccccCchhCCEEeCcCCcCCc
Confidence            34445666665 345679999999999976654 3 3899999999999998  77777667899999999999999998


Q ss_pred             CC-cccccCCCCcEEEccCCCCCC-c-ccccCCCCcCEEEccCCCCCC--CchhhcCCCCCCEEeccCCCCccccchhhh
Q 037969          215 LP-SSIGLLANLQTLCLDQSMLGD-I-AIIGKLKNLEILSFLNSDIVR--LPGELGQLTKLRLLDLTDCLQLKFIVPNVL  289 (300)
Q Consensus       215 lp-~~i~~l~~L~~L~l~~~~l~~-p-~~~~~l~~L~~L~l~~~~l~~--lp~~~~~l~~L~~L~l~~~~~l~~lp~~~l  289 (300)
                      +| ..++.+++|++|++++|.+.. + ..++.+++|++|++++|.++.  +|..++++++|++|++++|. +..+++..+
T Consensus        91 ~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~-l~~~~~~~~  169 (570)
T 2z63_A           91 LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDL  169 (570)
T ss_dssp             ECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSC-CCEECGGGG
T ss_pred             cCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCc-cceecHHHc
Confidence            64 679999999999999999887 4 369999999999999998874  78999999999999999998 666655447


Q ss_pred             cCCCCC
Q 037969          290 SSFTRL  295 (300)
Q Consensus       290 ~~L~~L  295 (300)
                      +.+++|
T Consensus       170 ~~l~~L  175 (570)
T 2z63_A          170 RVLHQM  175 (570)
T ss_dssp             HHHHTC
T ss_pred             cchhcc
Confidence            777776

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.66  E-value=7.1e-16  Score=139.59  Aligned_cols=156  Identities=24%  Similarity=0.301  Sum_probs=90.6

Q ss_pred             cccccCCCccccCCccEEEeecCCCcccCc-cc-cCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCcCCc
Q 037969          140 EVVWEWPDEDALKKCSAISLLNSSIHEVSE-EF-ECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPS  217 (300)
Q Consensus       140 ~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~-~~-~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp~  217 (300)
                      ..+..+|. ...++++.|++++|.+..++. .+ .+++|+.|++++|.+  ..+++..|.++++|++|++++|.++.+|.
T Consensus        21 ~~l~~ip~-~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i--~~~~~~~~~~l~~L~~L~L~~n~l~~~~~   97 (477)
T 2id5_A           21 KRFVAVPE-GIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIV--SAVEPGAFNNLFNLRTLGLRSNRLKLIPL   97 (477)
T ss_dssp             CCCSSCCS-CCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCC--CEECTTTTTTCTTCCEEECCSSCCCSCCT
T ss_pred             CCcCcCCC-CCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCcc--CEeChhhhhCCccCCEEECCCCcCCccCc
Confidence            33444443 233456666666666654432 22 566666666666666  44433334666666666666666666554


Q ss_pred             c-cccCCCCcEEEccCCCCCC--cccccCCCCcCEEEccCCCCCCC-chhhcCCCCCCEEeccCCCCccccchhhhcCCC
Q 037969          218 S-IGLLANLQTLCLDQSMLGD--IAIIGKLKNLEILSFLNSDIVRL-PGELGQLTKLRLLDLTDCLQLKFIVPNVLSSFT  293 (300)
Q Consensus       218 ~-i~~l~~L~~L~l~~~~l~~--p~~~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l~~~~~l~~lp~~~l~~L~  293 (300)
                      . ++.+++|++|++++|.+..  +..+..+++|++|++++|.++.+ |..+..+++|++|++++|. +..+|...+..++
T Consensus        98 ~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~l~~l~  176 (477)
T 2id5_A           98 GVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCN-LTSIPTEALSHLH  176 (477)
T ss_dssp             TSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCC-CSSCCHHHHTTCT
T ss_pred             ccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCc-CcccChhHhcccC
Confidence            3 4566666666666666655  35566666666666666666544 3346666666666666665 5555554466666


Q ss_pred             CCCeee
Q 037969          294 RLEELY  299 (300)
Q Consensus       294 ~L~~L~  299 (300)
                      +|+.|+
T Consensus       177 ~L~~L~  182 (477)
T 2id5_A          177 GLIVLR  182 (477)
T ss_dssp             TCCEEE
T ss_pred             CCcEEe
Confidence            666654

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.66  E-value=1.1e-15  Score=142.10  Aligned_cols=80  Identities=28%  Similarity=0.304  Sum_probs=50.2

Q ss_pred             cccCCCCcEEEccCCCCCC--cccccCCCCcCEEEccCCCCCCCchhhcCCCCCCEEeccCCCCccccchhhhcCCCCCC
Q 037969          219 IGLLANLQTLCLDQSMLGD--IAIIGKLKNLEILSFLNSDIVRLPGELGQLTKLRLLDLTDCLQLKFIVPNVLSSFTRLE  296 (300)
Q Consensus       219 i~~l~~L~~L~l~~~~l~~--p~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~l~~L~~L~  296 (300)
                      ++.+++|++|++++|.+..  |..++.+++|++|++++|.++.+|..++.+++|+.|++++|. +..+|.. ++.+++|+
T Consensus       250 l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~-l~~i~~~-~~~l~~L~  327 (597)
T 3oja_B          250 LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNH-LLHVERN-QPQFDRLE  327 (597)
T ss_dssp             GGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSC-CCCCGGG-HHHHTTCS
T ss_pred             hccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCC-CCccCcc-cccCCCCC
Confidence            4455666666666666655  455666666666666666666666666666666666666666 5566655 55666666


Q ss_pred             eeeC
Q 037969          297 ELYM  300 (300)
Q Consensus       297 ~L~l  300 (300)
                      +|++
T Consensus       328 ~L~L  331 (597)
T 3oja_B          328 NLYL  331 (597)
T ss_dssp             EEEC
T ss_pred             EEEC
Confidence            6553

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.66  E-value=8.4e-16  Score=119.41  Aligned_cols=126  Identities=21%  Similarity=0.228  Sum_probs=110.0

Q ss_pred             cCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCcCCcccccCCCCcEEEccCCCCCC--cccccCCCCcCE
Q 037969          172 ECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPSSIGLLANLQTLCLDQSMLGD--IAIIGKLKNLEI  249 (300)
Q Consensus       172 ~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~--p~~~~~l~~L~~  249 (300)
                      ..++|+.|++.+|.+..+.+|..+ ..+++|++|++++|.++.+ ..++.+++|++|++++|.+..  |..+..+++|++
T Consensus        22 ~~~~L~~L~l~~n~l~~~~i~~~~-~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~   99 (168)
T 2ell_A           22 TPAAVRELVLDNCKSNDGKIEGLT-AEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH   99 (168)
T ss_dssp             CTTSCSEEECCSCBCBTTBCSSCC-GGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred             CcccCCEEECCCCCCChhhHHHHH-HhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence            457899999999998212888764 8899999999999999988 778999999999999999987  455566999999


Q ss_pred             EEccCCCCCCCc--hhhcCCCCCCEEeccCCCCccccch---hhhcCCCCCCeeeC
Q 037969          250 LSFLNSDIVRLP--GELGQLTKLRLLDLTDCLQLKFIVP---NVLSSFTRLEELYM  300 (300)
Q Consensus       250 L~l~~~~l~~lp--~~~~~l~~L~~L~l~~~~~l~~lp~---~~l~~L~~L~~L~l  300 (300)
                      |++++|.++.+|  ..++.+++|++|++++|. +..+|.   ..+..+++|++|++
T Consensus       100 L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l  154 (168)
T 2ell_A          100 LNLSGNKLKDISTLEPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDG  154 (168)
T ss_dssp             EECBSSSCCSSGGGGGGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETT
T ss_pred             EeccCCccCcchhHHHHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecC
Confidence            999999999887  689999999999999998 777776   45899999999875

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.66  E-value=2.2e-15  Score=129.92  Aligned_cols=86  Identities=20%  Similarity=0.285  Sum_probs=44.4

Q ss_pred             CcccEEEeeCCcCCcC-CcccccCCCCcEEEccCCCCCC--cccccCCCCcCEEEccCCCCCCCchhhcCCCCCCEEecc
Q 037969          200 KTLRVIDLTRMRLFSL-PSSIGLLANLQTLCLDQSMLGD--IAIIGKLKNLEILSFLNSDIVRLPGELGQLTKLRLLDLT  276 (300)
Q Consensus       200 ~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~~~l~~--p~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~  276 (300)
                      ++|++|++++|.++.+ |..++.+++|++|++++|.+..  +..+..+++|++|++++|.++.+|..+..+++|++|+++
T Consensus       192 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~  271 (330)
T 1xku_A          192 PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLH  271 (330)
T ss_dssp             TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECC
T ss_pred             ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCChhhccCCCcCEEECC
Confidence            3444444444444443 3445555555555555555544  234555555555555555555555555555555555555


Q ss_pred             CCCCccccch
Q 037969          277 DCLQLKFIVP  286 (300)
Q Consensus       277 ~~~~l~~lp~  286 (300)
                      +|. ++.+|.
T Consensus       272 ~N~-i~~~~~  280 (330)
T 1xku_A          272 NNN-ISAIGS  280 (330)
T ss_dssp             SSC-CCCCCT
T ss_pred             CCc-CCccCh
Confidence            555 444443

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.65  E-value=2.5e-15  Score=137.47  Aligned_cols=161  Identities=17%  Similarity=0.288  Sum_probs=132.8

Q ss_pred             EEEeccccccCCCccccCCccEEEeecCCCcc-cCccc-cCCCccEEecccCccccccCch--hHHhcCCcccEEEeeCC
Q 037969          135 FLVRNEVVWEWPDEDALKKCSAISLLNSSIHE-VSEEF-ECLQLEFLHISQNTFVEVNIPD--NIFKGMKTLRVIDLTRM  210 (300)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~-~~~~~-~~~~L~~L~l~~~~~~~~~l~~--~~~~~l~~L~~L~l~~~  210 (300)
                      ..+.+..+...+....+++++.|++++|.+.. +|..+ .+++|+.|++++|.+  ..++.  ..+..+++|++|++++|
T Consensus       307 L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l--~~l~~~~~~~~~l~~L~~L~Ls~N  384 (520)
T 2z7x_B          307 FTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQL--KELSKIAEMTTQMKSLQQLDISQN  384 (520)
T ss_dssp             EEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCC--CBHHHHHHHHTTCTTCCEEECCSS
T ss_pred             EEcCCCccccccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCcc--CccccchHHHhhCCCCCEEECCCC
Confidence            34444444444322567889999999999954 56555 899999999999998  64432  33489999999999999


Q ss_pred             cCCc-CCcc-cccCCCCcEEEccCCCCCC--cccccCCCCcCEEEccCCCCCCCchhhcCCCCCCEEeccCCCCccccch
Q 037969          211 RLFS-LPSS-IGLLANLQTLCLDQSMLGD--IAIIGKLKNLEILSFLNSDIVRLPGELGQLTKLRLLDLTDCLQLKFIVP  286 (300)
Q Consensus       211 ~~~~-lp~~-i~~l~~L~~L~l~~~~l~~--p~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~  286 (300)
                      .++. +|.. +..+++|++|++++|.+..  |..+.  ++|++|++++|.++.+|..+..+++|++|++++|. +..+|.
T Consensus       385 ~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~-l~~l~~  461 (520)
T 2z7x_B          385 SVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQ-LKSVPD  461 (520)
T ss_dssp             CCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSC-CCCCCT
T ss_pred             cCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCcccccchhhhcCCCCCEEECCCCc-CCccCH
Confidence            9998 8865 7889999999999999876  55443  79999999999999999999999999999999998 788998


Q ss_pred             hhhcCCCCCCeeeC
Q 037969          287 NVLSSFTRLEELYM  300 (300)
Q Consensus       287 ~~l~~L~~L~~L~l  300 (300)
                      ..+..+++|++|++
T Consensus       462 ~~~~~l~~L~~L~l  475 (520)
T 2z7x_B          462 GIFDRLTSLQKIWL  475 (520)
T ss_dssp             TTTTTCTTCCEEEC
T ss_pred             HHhccCCcccEEEC
Confidence            66889999999875

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.65  E-value=3.7e-16  Score=118.98  Aligned_cols=122  Identities=21%  Similarity=0.276  Sum_probs=57.4

Q ss_pred             CccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCcCCcccccCCCCcEEEccCCCCCC--cccccCCCCcCEEEc
Q 037969          175 QLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPSSIGLLANLQTLCLDQSMLGD--IAIIGKLKNLEILSF  252 (300)
Q Consensus       175 ~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~--p~~~~~l~~L~~L~l  252 (300)
                      +++.|++.+|.+..+.+|..+ ..+++|++|++++|.++.+ ..++.+++|++|++++|.+..  |..++.+++|++|++
T Consensus        18 ~l~~L~l~~n~l~~~~~~~~~-~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l   95 (149)
T 2je0_A           18 DVKELVLDNSRSNEGKLEGLT-DEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL   95 (149)
T ss_dssp             GCSEEECTTCBCBTTBCCSCC-TTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred             cCeEEEccCCcCChhHHHHHH-hhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence            344444444444001344322 4445555555555555444 344455555555555555444  233334555555555


Q ss_pred             cCCCCCCCc--hhhcCCCCCCEEeccCCCCccccch---hhhcCCCCCCeee
Q 037969          253 LNSDIVRLP--GELGQLTKLRLLDLTDCLQLKFIVP---NVLSSFTRLEELY  299 (300)
Q Consensus       253 ~~~~l~~lp--~~~~~l~~L~~L~l~~~~~l~~lp~---~~l~~L~~L~~L~  299 (300)
                      ++|.++.+|  ..++.+++|++|++++|. +..+|.   ..++.+++|+.|+
T Consensus        96 s~N~i~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~  146 (149)
T 2je0_A           96 SGNKIKDLSTIEPLKKLENLKSLDLFNCE-VTNLNDYRENVFKLLPQLTYLD  146 (149)
T ss_dssp             TTSCCCSHHHHGGGGGCTTCCEEECTTCG-GGGSTTHHHHHHHHCTTCCEET
T ss_pred             CCCcCCChHHHHHHhhCCCCCEEeCcCCc-ccchHHHHHHHHHHCCCccccc
Confidence            555555443  445555555555555554 444443   2345555555554

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.65  E-value=7.6e-16  Score=132.11  Aligned_cols=144  Identities=15%  Similarity=0.130  Sum_probs=96.0

Q ss_pred             CCccEEEeecCCCcccCccccCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCcC-Cccc-ccCCCCcEEE
Q 037969          152 KKCSAISLLNSSIHEVSEEFECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSL-PSSI-GLLANLQTLC  229 (300)
Q Consensus       152 ~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~l-p~~i-~~l~~L~~L~  229 (300)
                      ++++.|++++|.+..++.. .+++|+.|++.+|.+  ..+++..+..+++|++|++++|.++.+ |..+ +.+++|++|+
T Consensus        99 ~~L~~L~l~~n~l~~~~~~-~~~~L~~L~l~~N~l--~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~  175 (317)
T 3o53_A           99 PSIETLHAANNNISRVSCS-RGQGKKNIYLANNKI--TMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLN  175 (317)
T ss_dssp             TTCCEEECCSSCCSEEEEC-CCSSCEEEECCSSCC--CSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEE
T ss_pred             CCcCEEECCCCccCCcCcc-ccCCCCEEECCCCCC--CCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEE
Confidence            5566666666666444322 356677777777777  555554456677777777777777764 3444 3567777777


Q ss_pred             ccCCCCCCcccccCCCCcCEEEccCCCCCCCchhhcCCCCCCEEeccCCCCccccchhhhcCCCCCCeeeC
Q 037969          230 LDQSMLGDIAIIGKLKNLEILSFLNSDIVRLPGELGQLTKLRLLDLTDCLQLKFIVPNVLSSFTRLEELYM  300 (300)
Q Consensus       230 l~~~~l~~p~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l  300 (300)
                      +++|.+...+....+++|++|++++|.++.+|..+..+++|++|++++|. +..+|.. +..+++|+.|++
T Consensus       176 L~~N~l~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~-l~~l~~~-~~~l~~L~~L~l  244 (317)
T 3o53_A          176 LQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNK-LVLIEKA-LRFSQNLEHFDL  244 (317)
T ss_dssp             CTTSCCCEEECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSC-CCEECTT-CCCCTTCCEEEC
T ss_pred             CCCCcCcccccccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCc-ccchhhH-hhcCCCCCEEEc
Confidence            77777766333445777777777777777777777777777777777776 6667765 677777777664

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.64  E-value=3.8e-16  Score=149.89  Aligned_cols=147  Identities=16%  Similarity=0.240  Sum_probs=97.4

Q ss_pred             ccCCccEEEeecCCC-cccCccc-cCCCccEEecccCc-cccc-cCchhHHhcCC-------cccEEEeeCCcCCcCCc-
Q 037969          150 ALKKCSAISLLNSSI-HEVSEEF-ECLQLEFLHISQNT-FVEV-NIPDNIFKGMK-------TLRVIDLTRMRLFSLPS-  217 (300)
Q Consensus       150 ~~~~l~~L~l~~~~~-~~~~~~~-~~~~L~~L~l~~~~-~~~~-~l~~~~~~~l~-------~L~~L~l~~~~~~~lp~-  217 (300)
                      .+++++.|++++|.+ ..+|..+ ++++|+.|++++|. + .+ .+|..+ ..+.       +|++|++++|.++.+|. 
T Consensus       489 ~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~l-sg~~iP~~i-~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~  566 (876)
T 4ecn_A          489 NLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGI-SAAQLKADW-TRLADDEDTGPKIQIFYMGYNNLEEFPAS  566 (876)
T ss_dssp             GCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTS-CHHHHHHHH-HHHHHCTTTTTTCCEEECCSSCCCBCCCH
T ss_pred             cCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCc-ccccchHHH-HhhhhcccccCCccEEEeeCCcCCccCCh
Confidence            566777777777665 5566544 67777777777776 4 23 466554 3443       77777777777777776 


Q ss_pred             -ccccCCCCcEEEccCCCCCCcccccCCCCcCEEEccCCCCCCCchhhcCCCC-CCEEeccCCCCccccchhhhcCCCC-
Q 037969          218 -SIGLLANLQTLCLDQSMLGDIAIIGKLKNLEILSFLNSDIVRLPGELGQLTK-LRLLDLTDCLQLKFIVPNVLSSFTR-  294 (300)
Q Consensus       218 -~i~~l~~L~~L~l~~~~l~~p~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~-L~~L~l~~~~~l~~lp~~~l~~L~~-  294 (300)
                       .++.+++|++|++++|.+...+.++.+++|+.|++++|.++.+|..++++++ |+.|++++|. +..+|.. ++.++. 
T Consensus       567 ~~l~~L~~L~~L~Ls~N~l~~lp~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~-L~~lp~~-~~~~~~~  644 (876)
T 4ecn_A          567 ASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNK-LKYIPNI-FNAKSVY  644 (876)
T ss_dssp             HHHTTCTTCCEEECTTSCCCBCCCCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSC-CCSCCSC-CCTTCSS
T ss_pred             hhhhcCCCCCEEECCCCCcccchhhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCC-CCcCchh-hhccccC
Confidence             6777777777777777766622677777777777777777777777777777 7777777776 5566654 555443 


Q ss_pred             -CCeeeC
Q 037969          295 -LEELYM  300 (300)
Q Consensus       295 -L~~L~l  300 (300)
                       |+.|++
T Consensus       645 ~L~~L~L  651 (876)
T 4ecn_A          645 VMGSVDF  651 (876)
T ss_dssp             CEEEEEC
T ss_pred             CCCEEEC
Confidence             666653

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.64  E-value=3.7e-15  Score=140.65  Aligned_cols=160  Identities=21%  Similarity=0.274  Sum_probs=112.5

Q ss_pred             EeccccccCCCccccCCccEEEeecCCCcccCcc-c-cCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCc
Q 037969          137 VRNEVVWEWPDEDALKKCSAISLLNSSIHEVSEE-F-ECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFS  214 (300)
Q Consensus       137 ~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~-~-~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~  214 (300)
                      ..+..+..+|. ...++++.|++++|.+..++.. + .+++|++|++++|.+  ..+++..+.++++|++|++++|.++.
T Consensus        11 cs~~~L~~ip~-~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l--~~~~~~~~~~l~~L~~L~L~~n~l~~   87 (680)
T 1ziw_A           11 CSHLKLTQVPD-DLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTI--SKLEPELCQKLPMLKVLNLQHNELSQ   87 (680)
T ss_dssp             CCSSCCSSCCS-CSCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCC--CCCCTTHHHHCTTCCEEECCSSCCCC
T ss_pred             CCCCCcccccc-ccCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCcc--CccCHHHHhcccCcCEEECCCCccCc
Confidence            33444555664 2346788888888888666643 3 778888888888877  56655556788888888888888888


Q ss_pred             CCc-ccccCCCCcEEEccCCCCCC--cccccCCCCcCEEEccCCCCCCC-chhhcCCCCCCEEeccCCCCccccchhhhc
Q 037969          215 LPS-SIGLLANLQTLCLDQSMLGD--IAIIGKLKNLEILSFLNSDIVRL-PGELGQLTKLRLLDLTDCLQLKFIVPNVLS  290 (300)
Q Consensus       215 lp~-~i~~l~~L~~L~l~~~~l~~--p~~~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l~~~~~l~~lp~~~l~  290 (300)
                      +|+ .++.+++|++|++++|.+..  |..++.+++|++|++++|.++.. |..++++++|++|++++|. +..+++..++
T Consensus        88 l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~  166 (680)
T 1ziw_A           88 LSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNK-IQALKSEELD  166 (680)
T ss_dssp             CCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSC-CCCBCHHHHG
T ss_pred             cChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCc-ccccCHHHhh
Confidence            765 47788888888888888776  35677888888888888877644 4457778888888888877 5555543333


Q ss_pred             --CCCCCCeeeC
Q 037969          291 --SFTRLEELYM  300 (300)
Q Consensus       291 --~L~~L~~L~l  300 (300)
                        .+++|++|++
T Consensus       167 ~~~~~~L~~L~L  178 (680)
T 1ziw_A          167 IFANSSLKKLEL  178 (680)
T ss_dssp             GGTTCEESEEEC
T ss_pred             ccccccccEEEC
Confidence              3466766654

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.64  E-value=1.5e-15  Score=136.58  Aligned_cols=153  Identities=27%  Similarity=0.411  Sum_probs=124.3

Q ss_pred             EEeccccccCCCccccCCccEEEeecCCCccc-Cccc-cCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCC
Q 037969          136 LVRNEVVWEWPDEDALKKCSAISLLNSSIHEV-SEEF-ECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLF  213 (300)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~-~~~~-~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~  213 (300)
                      ...+..+..+|.  ..+++++|++++|.+..+ |..+ .+++|++|++++|.+ ...+++..|.++++|++|++++|.++
T Consensus        16 ~c~~~~l~~lp~--l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~-~~~i~~~~~~~l~~L~~L~Ls~n~l~   92 (455)
T 3v47_A           16 ICINRGLHQVPE--LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTP-GLVIRNNTFRGLSSLIILKLDYNQFL   92 (455)
T ss_dssp             ECCSSCCSSCCC--CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCST-TCEECTTTTTTCTTCCEEECTTCTTC
T ss_pred             CcCCCCcccCCC--CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcc-cceECcccccccccCCEEeCCCCccC
Confidence            344555667776  457899999999999665 4444 899999999999987 23666666689999999999999999


Q ss_pred             cC-CcccccCCCCcEEEccCCCCCC--ccc--ccCCCCcCEEEccCCCCCCC-chh-hcCCCCCCEEeccCCCCccccch
Q 037969          214 SL-PSSIGLLANLQTLCLDQSMLGD--IAI--IGKLKNLEILSFLNSDIVRL-PGE-LGQLTKLRLLDLTDCLQLKFIVP  286 (300)
Q Consensus       214 ~l-p~~i~~l~~L~~L~l~~~~l~~--p~~--~~~l~~L~~L~l~~~~l~~l-p~~-~~~l~~L~~L~l~~~~~l~~lp~  286 (300)
                      .+ |..++.+++|++|++++|.+..  |..  ++.+++|++|++++|.++.+ |.. ++++++|++|++++|. +..+++
T Consensus        93 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~  171 (455)
T 3v47_A           93 QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNK-VKSICE  171 (455)
T ss_dssp             EECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCC-BSCCCT
T ss_pred             ccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCc-ccccCh
Confidence            85 7889999999999999999987  544  89999999999999999876 555 8899999999999998 444433


Q ss_pred             hhhcCC
Q 037969          287 NVLSSF  292 (300)
Q Consensus       287 ~~l~~L  292 (300)
                      ..+..+
T Consensus       172 ~~l~~l  177 (455)
T 3v47_A          172 EDLLNF  177 (455)
T ss_dssp             TTSGGG
T ss_pred             hhhhcc
Confidence            324443

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.64  E-value=4e-15  Score=139.33  Aligned_cols=125  Identities=15%  Similarity=0.163  Sum_probs=87.5

Q ss_pred             CCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCcCCcccccC--------CCCcEEEccCCCCCC-ccccc-
Q 037969          173 CLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPSSIGLL--------ANLQTLCLDQSMLGD-IAIIG-  242 (300)
Q Consensus       173 ~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l--------~~L~~L~l~~~~l~~-p~~~~-  242 (300)
                      +++|+.|++++|.+  ..+|..++..+++|++|++++|.++.+|..+...        ++|++|++++|.+.. |..+. 
T Consensus       432 ~~~L~~L~Ls~N~l--~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~  509 (636)
T 4eco_A          432 GINVSSINLSNNQI--SKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRA  509 (636)
T ss_dssp             CCCEEEEECCSSCC--CSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGST
T ss_pred             CCCCCEEECcCCcc--CcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCccChhhhh
Confidence            44666777777776  5677766666777777777777777766543322        277777777777776 66665 


Q ss_pred             -CCCCcCEEEccCCCCCCCchhhcCCCCCCEEecc------CCCCccccchhhhcCCCCCCeeeC
Q 037969          243 -KLKNLEILSFLNSDIVRLPGELGQLTKLRLLDLT------DCLQLKFIVPNVLSSFTRLEELYM  300 (300)
Q Consensus       243 -~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~------~~~~l~~lp~~~l~~L~~L~~L~l  300 (300)
                       .+++|++|++++|.++.+|..++++++|++|+++      +|...+.+|.. ++.+++|++|++
T Consensus       510 ~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~-l~~l~~L~~L~L  573 (636)
T 4eco_A          510 TTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEG-ITLCPSLTQLQI  573 (636)
T ss_dssp             TTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTT-GGGCSSCCEEEC
T ss_pred             ccCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCcccccCcccccChHH-HhcCCCCCEEEC
Confidence             7777777887777777777777777777777773      45545666665 777777777764

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.64  E-value=9.9e-16  Score=138.98  Aligned_cols=144  Identities=15%  Similarity=0.119  Sum_probs=99.6

Q ss_pred             CCccEEEeecCCCcccCccccCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCc-CCcccc-cCCCCcEEE
Q 037969          152 KKCSAISLLNSSIHEVSEEFECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFS-LPSSIG-LLANLQTLC  229 (300)
Q Consensus       152 ~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~-lp~~i~-~l~~L~~L~  229 (300)
                      ++++.|++++|.+..++.. .+++|+.|++++|.+  ..+++..++.+++|++|++++|.++. .|..+. .+++|++|+
T Consensus        99 ~~L~~L~L~~N~l~~~~~~-~l~~L~~L~L~~N~l--~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~  175 (487)
T 3oja_A           99 PSIETLHAANNNISRVSCS-RGQGKKNIYLANNKI--TMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLN  175 (487)
T ss_dssp             TTCCEEECCSSCCCCEEEC-CCSSCEEEECCSSCC--CSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEE
T ss_pred             CCcCEEECcCCcCCCCCcc-ccCCCCEEECCCCCC--CCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEe
Confidence            5566666666666444432 456777777777777  55544334677777788887777776 355554 677777888


Q ss_pred             ccCCCCCCcccccCCCCcCEEEccCCCCCCCchhhcCCCCCCEEeccCCCCccccchhhhcCCCCCCeeeC
Q 037969          230 LDQSMLGDIAIIGKLKNLEILSFLNSDIVRLPGELGQLTKLRLLDLTDCLQLKFIVPNVLSSFTRLEELYM  300 (300)
Q Consensus       230 l~~~~l~~p~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l  300 (300)
                      +++|.+...+....+++|++|++++|.++.+|+.++.+++|+.|++++|. +..+|.. ++.+++|+.|++
T Consensus       176 Ls~N~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~-l~~l~~L~~L~l  244 (487)
T 3oja_A          176 LQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNK-LVLIEKA-LRFSQNLEHFDL  244 (487)
T ss_dssp             CTTSCCCEEECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSC-CCEECTT-CCCCTTCCEEEC
T ss_pred             cCCCccccccccccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCc-Ccccchh-hccCCCCCEEEc
Confidence            77777776444446777778888777777777777777778888887777 6667765 777777777764

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.64  E-value=3.1e-15  Score=139.32  Aligned_cols=159  Identities=18%  Similarity=0.239  Sum_probs=128.3

Q ss_pred             EeccccccCCCccccCCccEEEeecCCCcccC-ccc-cCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCc
Q 037969          137 VRNEVVWEWPDEDALKKCSAISLLNSSIHEVS-EEF-ECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFS  214 (300)
Q Consensus       137 ~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~-~~~-~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~  214 (300)
                      ..+..+..+|. ...+.++.|++++|.+..++ ..+ .+++|++|++++|.+  ..+++..|.++++|++|++++|.++.
T Consensus        19 c~~~~l~~iP~-~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i--~~~~~~~~~~l~~L~~L~Ls~n~l~~   95 (606)
T 3t6q_A           19 CENLGLNEIPG-TLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQI--YWIHEDTFQSQHRLDTLVLTANPLIF   95 (606)
T ss_dssp             CTTSCCSSCCT-TSCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCC--CEECTTTTTTCTTCCEEECTTCCCSE
T ss_pred             CCCCCcccCcC-CCCCcCcEEEccCCccCcCChhHhccCccceEEECCCCcc--ceeChhhccCccccCeeeCCCCcccc
Confidence            34445566665 34567899999999997664 344 899999999999988  66655556899999999999999988


Q ss_pred             C-CcccccCCCCcEEEccCCCCCC--cccccCCCCcCEEEccCCCCCCCc-hhhcCCCCCCEEeccCCCCccccchhhhc
Q 037969          215 L-PSSIGLLANLQTLCLDQSMLGD--IAIIGKLKNLEILSFLNSDIVRLP-GELGQLTKLRLLDLTDCLQLKFIVPNVLS  290 (300)
Q Consensus       215 l-p~~i~~l~~L~~L~l~~~~l~~--p~~~~~l~~L~~L~l~~~~l~~lp-~~~~~l~~L~~L~l~~~~~l~~lp~~~l~  290 (300)
                      + |..++.+++|++|++++|.+..  +..++.+++|++|++++|.++.++ +.+..+++|++|++++|. +..+++..++
T Consensus        96 ~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~  174 (606)
T 3t6q_A           96 MAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNA-IHYLSKEDMS  174 (606)
T ss_dssp             ECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSC-CCEECHHHHH
T ss_pred             cChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCc-ccccChhhhh
Confidence            5 7789999999999999999887  678899999999999999988763 344559999999999998 6666555588


Q ss_pred             CCCCCC--eee
Q 037969          291 SFTRLE--ELY  299 (300)
Q Consensus       291 ~L~~L~--~L~  299 (300)
                      .+++|+  +|+
T Consensus       175 ~l~~L~~l~L~  185 (606)
T 3t6q_A          175 SLQQATNLSLN  185 (606)
T ss_dssp             TTTTCCSEEEE
T ss_pred             hhcccceeEEe
Confidence            999988  554

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.63  E-value=7.7e-15  Score=126.46  Aligned_cols=159  Identities=21%  Similarity=0.322  Sum_probs=109.0

Q ss_pred             EeccccccCCCccccCCccEEEeecCCCcccCcc--ccCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCc
Q 037969          137 VRNEVVWEWPDEDALKKCSAISLLNSSIHEVSEE--FECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFS  214 (300)
Q Consensus       137 ~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~  214 (300)
                      +..+.+..+|.. ..++++.|++++|.+..++..  ..+++|+.|++.+|.+.........+..+++|++|++++|.++.
T Consensus       107 Ls~n~l~~l~~~-~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~  185 (330)
T 1xku_A          107 LSKNQLKELPEK-MPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT  185 (330)
T ss_dssp             CCSSCCSBCCSS-CCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS
T ss_pred             CCCCcCCccChh-hcccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc
Confidence            333344444432 225566666666666544432  26667777777766651111223334667777777777777777


Q ss_pred             CCcccccCCCCcEEEccCCCCCC--cccccCCCCcCEEEccCCCCCCCch-hhcCCCCCCEEeccCCCCccccchhhhcC
Q 037969          215 LPSSIGLLANLQTLCLDQSMLGD--IAIIGKLKNLEILSFLNSDIVRLPG-ELGQLTKLRLLDLTDCLQLKFIVPNVLSS  291 (300)
Q Consensus       215 lp~~i~~l~~L~~L~l~~~~l~~--p~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~l~~lp~~~l~~  291 (300)
                      +|..+.  ++|++|++++|.+..  |..+..+++|++|++++|.++.++. .+..+++|++|++++|. +..+|.. +..
T Consensus       186 l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~lp~~-l~~  261 (330)
T 1xku_A          186 IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNK-LVKVPGG-LAD  261 (330)
T ss_dssp             CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSC-CSSCCTT-TTT
T ss_pred             CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCc-CccCChh-hcc
Confidence            766543  678888888888776  5778888999999999998886655 68888999999999998 7788876 888


Q ss_pred             CCCCCeeeC
Q 037969          292 FTRLEELYM  300 (300)
Q Consensus       292 L~~L~~L~l  300 (300)
                      +++|++|++
T Consensus       262 l~~L~~L~l  270 (330)
T 1xku_A          262 HKYIQVVYL  270 (330)
T ss_dssp             CSSCCEEEC
T ss_pred             CCCcCEEEC
Confidence            899988875

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.63  E-value=7.1e-16  Score=141.93  Aligned_cols=155  Identities=21%  Similarity=0.301  Sum_probs=91.8

Q ss_pred             cccccCCCccccCCccEEEeecCCCcccC-ccc-cCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCcCCc
Q 037969          140 EVVWEWPDEDALKKCSAISLLNSSIHEVS-EEF-ECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPS  217 (300)
Q Consensus       140 ~~~~~~~~~~~~~~l~~L~l~~~~~~~~~-~~~-~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp~  217 (300)
                      ..+..+|. ...++++.|++++|.+..++ ..+ .+++|++|++++|.+  ..+++..|..+++|++|++++|.++.+|+
T Consensus        15 ~~l~~ip~-~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i--~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~   91 (549)
T 2z81_A           15 RSFTSIPS-GLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRI--NTIEGDAFYSLGSLEHLDLSDNHLSSLSS   91 (549)
T ss_dssp             SCCSSCCS-CCCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCC--CEECTTTTTTCTTCCEEECTTSCCCSCCH
T ss_pred             Cccccccc-cCCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCc--CccChhhccccccCCEEECCCCccCccCH
Confidence            34444554 22356677777777665443 223 666777777777666  55554444666677777777776666544


Q ss_pred             c-cccCCCCcEEEccCCCCCC---cccccCCCCcCEEEccCCC-CCCCc-hhhcCCCCCCEEeccCCCCccccchhhhcC
Q 037969          218 S-IGLLANLQTLCLDQSMLGD---IAIIGKLKNLEILSFLNSD-IVRLP-GELGQLTKLRLLDLTDCLQLKFIVPNVLSS  291 (300)
Q Consensus       218 ~-i~~l~~L~~L~l~~~~l~~---p~~~~~l~~L~~L~l~~~~-l~~lp-~~~~~l~~L~~L~l~~~~~l~~lp~~~l~~  291 (300)
                      . ++.+++|++|++++|.+..   |..++.+++|++|++++|. +..+| ..++++++|++|++++|...+..|.. ++.
T Consensus        92 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-l~~  170 (549)
T 2z81_A           92 SWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQS-LKS  170 (549)
T ss_dssp             HHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTT-TTT
T ss_pred             HHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhh-hhc
Confidence            3 6666777777777766653   4556666677777776664 45554 34666666666666666633334433 555


Q ss_pred             CCCCCee
Q 037969          292 FTRLEEL  298 (300)
Q Consensus       292 L~~L~~L  298 (300)
                      +++|++|
T Consensus       171 l~~L~~L  177 (549)
T 2z81_A          171 IRDIHHL  177 (549)
T ss_dssp             CSEEEEE
T ss_pred             cccCceE
Confidence            5544444

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.63  E-value=3.5e-15  Score=128.79  Aligned_cols=156  Identities=18%  Similarity=0.303  Sum_probs=67.5

Q ss_pred             eccccccCCCccccCCccEEEeecCCCcccCcc-c-cCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCcC
Q 037969          138 RNEVVWEWPDEDALKKCSAISLLNSSIHEVSEE-F-ECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSL  215 (300)
Q Consensus       138 ~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~-~-~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~l  215 (300)
                      ..+.+..+|... .++++.|++++|.+..++.. + .+++|+.|++.+|.+.....+...+..+ +|++|++++|.++.+
T Consensus       110 ~~n~l~~l~~~~-~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l  187 (332)
T 2ft3_A          110 SKNHLVEIPPNL-PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGI  187 (332)
T ss_dssp             CSSCCCSCCSSC-CTTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSC
T ss_pred             CCCcCCccCccc-cccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCcc
Confidence            333344444322 25566666666666555442 2 5666666666666551001111112222 333333333333332


Q ss_pred             CcccccCCCCcEEEccCCCCCC--cccccCCCCcCEEEccCCCCCCCch-hhcCCCCCCEEeccCCCCccccchhhhcCC
Q 037969          216 PSSIGLLANLQTLCLDQSMLGD--IAIIGKLKNLEILSFLNSDIVRLPG-ELGQLTKLRLLDLTDCLQLKFIVPNVLSSF  292 (300)
Q Consensus       216 p~~i~~l~~L~~L~l~~~~l~~--p~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~l~~lp~~~l~~L  292 (300)
                      |..+.  ++|++|++++|.+..  +..+..+++|++|++++|.++.++. .++.+++|++|++++|. +..+|.. ++.+
T Consensus       188 ~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~lp~~-l~~l  263 (332)
T 2ft3_A          188 PKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNK-LSRVPAG-LPDL  263 (332)
T ss_dssp             CSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSC-CCBCCTT-GGGC
T ss_pred             Ccccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCc-CeecChh-hhcC
Confidence            22211  334444444444443  2344444455555555544444332 34444555555555444 4444443 4444


Q ss_pred             CCCCeee
Q 037969          293 TRLEELY  299 (300)
Q Consensus       293 ~~L~~L~  299 (300)
                      ++|++|+
T Consensus       264 ~~L~~L~  270 (332)
T 2ft3_A          264 KLLQVVY  270 (332)
T ss_dssp             TTCCEEE
T ss_pred             ccCCEEE
Confidence            4444444

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.63  E-value=7.2e-15  Score=141.08  Aligned_cols=124  Identities=15%  Similarity=0.150  Sum_probs=94.6

Q ss_pred             CCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCcCCcccccC--------CCCcEEEccCCCCCC-ccccc--
Q 037969          174 LQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPSSIGLL--------ANLQTLCLDQSMLGD-IAIIG--  242 (300)
Q Consensus       174 ~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l--------~~L~~L~l~~~~l~~-p~~~~--  242 (300)
                      ++|+.|++++|.+  ..+|..++..+++|+.|++++|.++.+|..+...        ++|++|++++|.+.. |..+.  
T Consensus       673 ~~L~~L~Ls~N~L--~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~  750 (876)
T 4ecn_A          673 INASTVTLSYNEI--QKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRAT  750 (876)
T ss_dssp             CCEEEEECCSSCC--CSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTT
T ss_pred             CCcCEEEccCCcC--CccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCccchHHhhhc
Confidence            3677777777777  6777777667888888888888888777665443        278888888888877 77776  


Q ss_pred             CCCCcCEEEccCCCCCCCchhhcCCCCCCEEeccC------CCCccccchhhhcCCCCCCeeeC
Q 037969          243 KLKNLEILSFLNSDIVRLPGELGQLTKLRLLDLTD------CLQLKFIVPNVLSSFTRLEELYM  300 (300)
Q Consensus       243 ~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~------~~~l~~lp~~~l~~L~~L~~L~l  300 (300)
                      .+++|+.|++++|.++.+|..++++++|+.|++++      |...+.+|.. ++.+++|++|+|
T Consensus       751 ~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~-l~~L~~L~~L~L  813 (876)
T 4ecn_A          751 TLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTG-ITTCPSLIQLQI  813 (876)
T ss_dssp             TCTTCCEEECCSSCCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTT-GGGCSSCCEEEC
T ss_pred             cCCCcCEEEeCCCCCCccchhhhcCCCCCEEECCCCCCcccccccccChHH-HhcCCCCCEEEC
Confidence            78888888888888888888888888888888865      5555667765 778888888765

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.63  E-value=3e-15  Score=143.22  Aligned_cols=147  Identities=24%  Similarity=0.319  Sum_probs=120.1

Q ss_pred             cCCccEEEeecCCCc-ccCccc-cCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCc-CCcccccCCCCcE
Q 037969          151 LKKCSAISLLNSSIH-EVSEEF-ECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFS-LPSSIGLLANLQT  227 (300)
Q Consensus       151 ~~~l~~L~l~~~~~~-~~~~~~-~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~-lp~~i~~l~~L~~  227 (300)
                      .++++.|++.+|.+. .+|..+ .+++|+.|++++|.+ .+.+|..+ ..+++|++|++++|.++. +|..++.+++|++
T Consensus       393 ~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~~~p~~l-~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~  470 (768)
T 3rgz_A          393 KNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYL-SGTIPSSL-GSLSKLRDLKLWLNMLEGEIPQELMYVKTLET  470 (768)
T ss_dssp             TCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEE-ESCCCGGG-GGCTTCCEEECCSSCCCSCCCGGGGGCTTCCE
T ss_pred             cCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcc-cCcccHHH-hcCCCCCEEECCCCcccCcCCHHHcCCCCceE
Confidence            556778888887773 566555 788888898888887 24566554 788889999999988885 6888888899999


Q ss_pred             EEccCCCCCC--cccccCCCCcCEEEccCCCCC-CCchhhcCCCCCCEEeccCCCCccccchhhhcCCCCCCeeeC
Q 037969          228 LCLDQSMLGD--IAIIGKLKNLEILSFLNSDIV-RLPGELGQLTKLRLLDLTDCLQLKFIVPNVLSSFTRLEELYM  300 (300)
Q Consensus       228 L~l~~~~l~~--p~~~~~l~~L~~L~l~~~~l~-~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l  300 (300)
                      |++++|.+..  |..++.+++|++|++++|.++ .+|..++++++|++|++++|...+.+|.. ++.+++|+.|++
T Consensus       471 L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~-l~~l~~L~~L~L  545 (768)
T 3rgz_A          471 LILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAE-LGDCRSLIWLDL  545 (768)
T ss_dssp             EECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGG-GGGCTTCCEEEC
T ss_pred             EEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHH-HcCCCCCCEEEC
Confidence            9999998875  778888999999999999887 78888899999999999999866678876 888999988875

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.62  E-value=2.5e-15  Score=131.27  Aligned_cols=142  Identities=18%  Similarity=0.241  Sum_probs=123.0

Q ss_pred             cEEEeecCCCcccCccccCCCccEEecccCccccccCchhHHh-cCCcccEEEeeCCcCCcCC-cccccCCCCcEEEccC
Q 037969          155 SAISLLNSSIHEVSEEFECLQLEFLHISQNTFVEVNIPDNIFK-GMKTLRVIDLTRMRLFSLP-SSIGLLANLQTLCLDQ  232 (300)
Q Consensus       155 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~-~l~~L~~L~l~~~~~~~lp-~~i~~l~~L~~L~l~~  232 (300)
                      +.+++.++.+..+|..+ .+.++.|++++|.+  ..++...|. .+++|++|++++|.++.+| ..+..+++|++|++++
T Consensus        21 ~~l~c~~~~l~~iP~~~-~~~l~~L~Ls~N~l--~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   97 (361)
T 2xot_A           21 NILSCSKQQLPNVPQSL-PSYTALLDLSHNNL--SRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS   97 (361)
T ss_dssp             TEEECCSSCCSSCCSSC-CTTCSEEECCSSCC--CEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEEEeCCCCcCccCccC-CCCCCEEECCCCCC--CccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence            57889999998888754 34689999999999  888887766 8999999999999999975 5699999999999999


Q ss_pred             CCCCC-c-ccccCCCCcCEEEccCCCCCCC-chhhcCCCCCCEEeccCCCCccccchhhh---cCCCCCCeeeC
Q 037969          233 SMLGD-I-AIIGKLKNLEILSFLNSDIVRL-PGELGQLTKLRLLDLTDCLQLKFIVPNVL---SSFTRLEELYM  300 (300)
Q Consensus       233 ~~l~~-p-~~~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l~~~~~l~~lp~~~l---~~L~~L~~L~l  300 (300)
                      |.+.. + ..+..+++|++|++++|.++.+ |..+..+++|++|++++|. +..+|...+   +.+++|+.|+|
T Consensus        98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~~l~~L~~L~L  170 (361)
T 2xot_A           98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQ-ISRFPVELIKDGNKLPKLMLLDL  170 (361)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCSCCGGGTC----CTTCCEEEC
T ss_pred             CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCc-CCeeCHHHhcCcccCCcCCEEEC
Confidence            99988 4 5689999999999999999976 5679999999999999999 888998755   67999999875

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.62  E-value=1.6e-15  Score=118.76  Aligned_cols=127  Identities=17%  Similarity=0.255  Sum_probs=107.3

Q ss_pred             cccCCccEEEeecCCCcccCccccCC-CccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCcCCccc-ccCCCCc
Q 037969          149 DALKKCSAISLLNSSIHEVSEEFECL-QLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPSSI-GLLANLQ  226 (300)
Q Consensus       149 ~~~~~l~~L~l~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~i-~~l~~L~  226 (300)
                      ....+++.|++++|.+..++....+. +|+.|++++|.+  ..++ . +..+++|++|++++|.++.+|+.+ +.+++|+
T Consensus        16 ~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l--~~~~-~-l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~   91 (176)
T 1a9n_A           16 TNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEI--RKLD-G-FPLLRRLKTLLVNNNRICRIGEGLDQALPDLT   91 (176)
T ss_dssp             ECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCC--CEEC-C-CCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred             CCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCC--Cccc-c-cccCCCCCEEECCCCcccccCcchhhcCCCCC
Confidence            44667899999999998887766554 999999999988  6663 3 478899999999999999887654 8899999


Q ss_pred             EEEccCCCCCC-cc--cccCCCCcCEEEccCCCCCCCchh----hcCCCCCCEEeccCCC
Q 037969          227 TLCLDQSMLGD-IA--IIGKLKNLEILSFLNSDIVRLPGE----LGQLTKLRLLDLTDCL  279 (300)
Q Consensus       227 ~L~l~~~~l~~-p~--~~~~l~~L~~L~l~~~~l~~lp~~----~~~l~~L~~L~l~~~~  279 (300)
                      +|++++|.+.. |.  .++.+++|++|++++|.++.+|..    ++.+++|+.|++++|.
T Consensus        92 ~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~  151 (176)
T 1a9n_A           92 ELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVK  151 (176)
T ss_dssp             EEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred             EEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence            99999999887 54  788999999999999998888875    8899999999998887

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.62  E-value=3.3e-15  Score=139.89  Aligned_cols=144  Identities=19%  Similarity=0.203  Sum_probs=124.5

Q ss_pred             cCCccEEEeecCCCcccCccc--cCCCccEEecccCccccccCchhHHhcCC-------cccEEEeeCCcCCcCCcccc-
Q 037969          151 LKKCSAISLLNSSIHEVSEEF--ECLQLEFLHISQNTFVEVNIPDNIFKGMK-------TLRVIDLTRMRLFSLPSSIG-  220 (300)
Q Consensus       151 ~~~l~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~l~~~~~~~l~-------~L~~L~l~~~~~~~lp~~i~-  220 (300)
                      ..+++.|++++|.+..+|...  .+++|+.|++++|.+  ..+|..++....       +|++|++++|.++.+|..+. 
T Consensus       432 ~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l--~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~  509 (636)
T 4eco_A          432 GINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNML--TEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRA  509 (636)
T ss_dssp             CCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCC--SBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGST
T ss_pred             CCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCC--CCcCHHHhccccccccccCCccEEECcCCcCCccChhhhh
Confidence            447888888888888777754  589999999999999  788887755443       99999999999999999987 


Q ss_pred             -cCCCCcEEEccCCCCCC-cccccCCCCcCEEEccC------CCC-CCCchhhcCCCCCCEEeccCCCCccccchhhhcC
Q 037969          221 -LLANLQTLCLDQSMLGD-IAIIGKLKNLEILSFLN------SDI-VRLPGELGQLTKLRLLDLTDCLQLKFIVPNVLSS  291 (300)
Q Consensus       221 -~l~~L~~L~l~~~~l~~-p~~~~~l~~L~~L~l~~------~~l-~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~l~~  291 (300)
                       .+++|++|++++|.+.. |..++.+++|++|++++      |.+ ..+|..++++++|++|++++|. ++.+|.. +. 
T Consensus       510 ~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~ip~~-~~-  586 (636)
T 4eco_A          510 TTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSND-IRKVNEK-IT-  586 (636)
T ss_dssp             TTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSC-CCBCCSC-CC-
T ss_pred             ccCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCc-CCccCHh-Hh-
Confidence             99999999999999998 89999999999999954      544 4889999999999999999999 6999986 44 


Q ss_pred             CCCCCeeeC
Q 037969          292 FTRLEELYM  300 (300)
Q Consensus       292 L~~L~~L~l  300 (300)
                       ++|++|++
T Consensus       587 -~~L~~L~L  594 (636)
T 4eco_A          587 -PNISVLDI  594 (636)
T ss_dssp             -TTCCEEEC
T ss_pred             -CcCCEEEC
Confidence             78998875

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.62  E-value=3.7e-15  Score=138.79  Aligned_cols=143  Identities=17%  Similarity=0.246  Sum_probs=126.1

Q ss_pred             ccEEEeecCCCcccCccccCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCcC-CcccccCCCCcEEEccC
Q 037969          154 CSAISLLNSSIHEVSEEFECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSL-PSSIGLLANLQTLCLDQ  232 (300)
Q Consensus       154 l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~  232 (300)
                      -+.++.+++.+..+|.... +++++|++++|.+  ..+++..|.++++|++|++++|.++.+ |..++.+++|++|++++
T Consensus        13 ~~~~~c~~~~l~~ip~~~~-~~l~~L~Ls~n~l--~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~   89 (606)
T 3vq2_A           13 NITYQCMDQKLSKVPDDIP-SSTKNIDLSFNPL--KILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTG   89 (606)
T ss_dssp             TTEEECTTSCCSSCCTTSC-TTCCEEECTTSCC--CEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTT
T ss_pred             CCceEccCCCcccCCCCCC-CCcCEEECCCCCc--CEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCC
Confidence            3578888888888887554 7899999999999  777776679999999999999999996 66799999999999999


Q ss_pred             CCCCC--cccccCCCCcCEEEccCCCCCCCc-hhhcCCCCCCEEeccCCCCcc-ccchhhhcCCCCCCeeeC
Q 037969          233 SMLGD--IAIIGKLKNLEILSFLNSDIVRLP-GELGQLTKLRLLDLTDCLQLK-FIVPNVLSSFTRLEELYM  300 (300)
Q Consensus       233 ~~l~~--p~~~~~l~~L~~L~l~~~~l~~lp-~~~~~l~~L~~L~l~~~~~l~-~lp~~~l~~L~~L~~L~l  300 (300)
                      |.+..  |..++.+++|++|++++|.++.+| ..++++++|++|++++|.... .+|.. ++++++|++|++
T Consensus        90 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~-~~~l~~L~~L~L  160 (606)
T 3vq2_A           90 NPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAY-FSNLTNLVHVDL  160 (606)
T ss_dssp             CCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGG-GGTCTTCCEEEC
T ss_pred             CcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHh-HhhcCCCCEEEc
Confidence            99887  688999999999999999999877 679999999999999998433 46876 999999999975

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.62  E-value=9.2e-15  Score=135.03  Aligned_cols=161  Identities=17%  Similarity=0.249  Sum_probs=132.0

Q ss_pred             EEEeccccccCCCccccCCccEEEeecCCCcc-cCccc-cCCCccEEecccCccccccCch--hHHhcCCcccEEEeeCC
Q 037969          135 FLVRNEVVWEWPDEDALKKCSAISLLNSSIHE-VSEEF-ECLQLEFLHISQNTFVEVNIPD--NIFKGMKTLRVIDLTRM  210 (300)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~-~~~~~-~~~~L~~L~l~~~~~~~~~l~~--~~~~~l~~L~~L~l~~~  210 (300)
                      ....+..+...+....+++++.|++++|.+.. +|..+ .+++|+.|++.+|.+  ..++.  ..+..+++|++|++++|
T Consensus       336 L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l--~~~~~~~~~~~~l~~L~~L~l~~N  413 (562)
T 3a79_B          336 LSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGL--KNFFKVALMTKNMSSLETLDVSLN  413 (562)
T ss_dssp             EEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCC--CBTTHHHHTTTTCTTCCEEECTTS
T ss_pred             EEccCCCcccccCccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCc--CCcccchhhhcCCCCCCEEECCCC
Confidence            33444444433322567889999999999954 56555 899999999999998  66553  23478999999999999


Q ss_pred             cCCc-CCcc-cccCCCCcEEEccCCCCCC--cccccCCCCcCEEEccCCCCCCCchhhcCCCCCCEEeccCCCCccccch
Q 037969          211 RLFS-LPSS-IGLLANLQTLCLDQSMLGD--IAIIGKLKNLEILSFLNSDIVRLPGELGQLTKLRLLDLTDCLQLKFIVP  286 (300)
Q Consensus       211 ~~~~-lp~~-i~~l~~L~~L~l~~~~l~~--p~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~  286 (300)
                      .++. +|.. +..+++|++|++++|.+..  |..+.  ++|++|++++|.++.+|..+..+++|++|++++|. +..+|.
T Consensus       414 ~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~-l~~l~~  490 (562)
T 3a79_B          414 SLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQ-LKSVPD  490 (562)
T ss_dssp             CCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSC-CCCCCT
T ss_pred             cCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCcccChhhcCCCCCCEEECCCCC-CCCCCH
Confidence            9998 7764 7889999999999999876  44443  79999999999999999999999999999999999 788998


Q ss_pred             hhhcCCCCCCeeeC
Q 037969          287 NVLSSFTRLEELYM  300 (300)
Q Consensus       287 ~~l~~L~~L~~L~l  300 (300)
                      ..+..+++|+.|++
T Consensus       491 ~~~~~l~~L~~L~l  504 (562)
T 3a79_B          491 GVFDRLTSLQYIWL  504 (562)
T ss_dssp             TSTTTCTTCCCEEC
T ss_pred             HHHhcCCCCCEEEe
Confidence            66889999999875

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.62  E-value=7.4e-16  Score=128.66  Aligned_cols=141  Identities=19%  Similarity=0.254  Sum_probs=122.6

Q ss_pred             ccCCccEEEeecCCCcccCccccCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCcCCcccccCCCCcEEE
Q 037969          150 ALKKCSAISLLNSSIHEVSEEFECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPSSIGLLANLQTLC  229 (300)
Q Consensus       150 ~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~  229 (300)
                      .+.++..+.+..+.+..++....+++|+.|++.+|.+  ..++.  +..+++|++|++++|.++.+|. ++.+++|++|+
T Consensus        17 ~l~~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i--~~l~~--l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~   91 (263)
T 1xeu_A           17 GLANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNI--QSLAG--MQFFTNLKELHLSHNQISDLSP-LKDLTKLEELS   91 (263)
T ss_dssp             HHHHHHHHHHTCSCTTSEECHHHHTTCSEEECTTSCC--CCCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEE
T ss_pred             HHHHHHHHHhcCCCcccccchhhcCcCcEEECcCCCc--ccchH--HhhCCCCCEEECCCCccCCChh-hccCCCCCEEE
Confidence            4555667778888887777666999999999999999  78883  4889999999999999999887 99999999999


Q ss_pred             ccCCCCCCcccccCCCCcCEEEccCCCCCCCchhhcCCCCCCEEeccCCCCccccchhhhcCCCCCCeeeC
Q 037969          230 LDQSMLGDIAIIGKLKNLEILSFLNSDIVRLPGELGQLTKLRLLDLTDCLQLKFIVPNVLSSFTRLEELYM  300 (300)
Q Consensus       230 l~~~~l~~p~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l  300 (300)
                      +++|.+...+.+.. ++|++|++++|.++.+| .++.+++|+.|++++|. +..+|.  ++.+++|++|++
T Consensus        92 L~~N~l~~l~~~~~-~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~-i~~~~~--l~~l~~L~~L~L  157 (263)
T 1xeu_A           92 VNRNRLKNLNGIPS-ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNK-LKSIVM--LGFLSKLEVLDL  157 (263)
T ss_dssp             CCSSCCSCCTTCCC-SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSC-CCBCGG--GGGCTTCCEEEC
T ss_pred             CCCCccCCcCcccc-CcccEEEccCCccCCCh-hhcCcccccEEECCCCc-CCCChH--HccCCCCCEEEC
Confidence            99999988333444 99999999999999986 69999999999999999 788874  899999999975

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.62  E-value=1.6e-14  Score=130.46  Aligned_cols=76  Identities=28%  Similarity=0.396  Sum_probs=30.9

Q ss_pred             ccCCCCcEEEccCCCCCCcccccCCCCcCEEEccCCCCCCCchhhcCCCCCCEEeccCCCCccccchhhhcCCCCCCeee
Q 037969          220 GLLANLQTLCLDQSMLGDIAIIGKLKNLEILSFLNSDIVRLPGELGQLTKLRLLDLTDCLQLKFIVPNVLSSFTRLEELY  299 (300)
Q Consensus       220 ~~l~~L~~L~l~~~~l~~p~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~  299 (300)
                      +.+++|++|++++|.+.....+..+++|+.|++++|.++.++ .+.++++|+.|++++|. +...++  +..+++|+.|+
T Consensus       306 ~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~-l~~~~~--~~~l~~L~~L~  381 (466)
T 1o6v_A          306 SNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVS-SLANLTNINWLSAGHNQ-ISDLTP--LANLTRITQLG  381 (466)
T ss_dssp             GGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSC-CCBCGG--GTTCTTCCEEE
T ss_pred             cCCCCCCEEECcCCcCCCchhhccCccCCEeECCCCccCCch-hhccCCCCCEEeCCCCc-cCccch--hhcCCCCCEEe
Confidence            333444444444444333111334444444444444444332 34444444444444444 222222  34444444443

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.61  E-value=7e-15  Score=135.30  Aligned_cols=162  Identities=20%  Similarity=0.275  Sum_probs=123.1

Q ss_pred             EEEeccccccCCCc--cccCCccEEEeecCCCcc-cCc----cccCCCccEEecccCccccccCch--hHHhcCCcccEE
Q 037969          135 FLVRNEVVWEWPDE--DALKKCSAISLLNSSIHE-VSE----EFECLQLEFLHISQNTFVEVNIPD--NIFKGMKTLRVI  205 (300)
Q Consensus       135 ~~~~~~~~~~~~~~--~~~~~l~~L~l~~~~~~~-~~~----~~~~~~L~~L~l~~~~~~~~~l~~--~~~~~l~~L~~L  205 (300)
                      ..+.+..+..+|..  ..+++++.|++++|.+.. +|.    ...+++|+.|++++|.+  ..++.  ..+..+++|++|
T Consensus       315 L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l--~~~~~~~~~~~~l~~L~~L  392 (549)
T 2z81_A          315 ITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHL--RSMQKTGEILLTLKNLTSL  392 (549)
T ss_dssp             EEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCC--CCHHHHHHHGGGCTTCCEE
T ss_pred             EEeccCccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcc--cccccchhhhhcCCCCCEE
Confidence            33444455555543  357888888988888843 322    23678888999988888  66653  445788899999


Q ss_pred             EeeCCcCCcCCcccccCCCCcEEEccCCCCCC-cccc------------------cCCCCcCEEEccCCCCCCCchhhcC
Q 037969          206 DLTRMRLFSLPSSIGLLANLQTLCLDQSMLGD-IAII------------------GKLKNLEILSFLNSDIVRLPGELGQ  266 (300)
Q Consensus       206 ~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~-p~~~------------------~~l~~L~~L~l~~~~l~~lp~~~~~  266 (300)
                      ++++|.++.+|..++.+++|++|++++|.+.. |..+                  +.+++|++|++++|+++.+|. .+.
T Consensus       393 ~Ls~N~l~~lp~~~~~~~~L~~L~Ls~N~l~~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~l~~ip~-~~~  471 (549)
T 2z81_A          393 DISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLKTLPD-ASL  471 (549)
T ss_dssp             ECTTCCCCCCCSCCCCCTTCCEEECTTSCCSCCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCC-GGG
T ss_pred             ECCCCCCccCChhhcccccccEEECCCCCcccccchhcCCceEEECCCCChhhhcccCChhcEEECCCCccCcCCC-ccc
Confidence            99999888888888888888888888887765 3222                  368889999999999998987 577


Q ss_pred             CCCCCEEeccCCCCccccchhhhcCCCCCCeeeC
Q 037969          267 LTKLRLLDLTDCLQLKFIVPNVLSSFTRLEELYM  300 (300)
Q Consensus       267 l~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l  300 (300)
                      +++|++|++++|. +..+|+..++.+++|++|++
T Consensus       472 l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~l  504 (549)
T 2z81_A          472 FPVLLVMKISRNQ-LKSVPDGIFDRLTSLQKIWL  504 (549)
T ss_dssp             CTTCCEEECCSSC-CCCCCTTGGGGCTTCCEEEC
T ss_pred             CccCCEEecCCCc-cCCcCHHHHhcCcccCEEEe
Confidence            8999999999998 66777655889999999875

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.61  E-value=1.4e-15  Score=115.75  Aligned_cols=123  Identities=25%  Similarity=0.308  Sum_probs=109.7

Q ss_pred             cCCccEEEeecCCCc--ccCccc-cCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCc-CCcccccCCCCc
Q 037969          151 LKKCSAISLLNSSIH--EVSEEF-ECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFS-LPSSIGLLANLQ  226 (300)
Q Consensus       151 ~~~l~~L~l~~~~~~--~~~~~~-~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~-lp~~i~~l~~L~  226 (300)
                      .++++.|++++|.+.  .+|..+ .+++|+.|++++|.+  ..+ .. +..+++|++|++++|.++. +|..++.+++|+
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l--~~~-~~-~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~   91 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGL--TSI-AN-LPKLNKLKKLELSDNRVSGGLEVLAEKCPNLT   91 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCC--CCC-TT-CCCCTTCCEEECCSSCCCSCTHHHHHHCTTCC
T ss_pred             CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCC--CCc-hh-hhcCCCCCEEECCCCcccchHHHHhhhCCCCC
Confidence            467999999999997  788775 899999999999998  666 33 5889999999999999998 788888899999


Q ss_pred             EEEccCCCCCC-c--ccccCCCCcCEEEccCCCCCCCch----hhcCCCCCCEEeccC
Q 037969          227 TLCLDQSMLGD-I--AIIGKLKNLEILSFLNSDIVRLPG----ELGQLTKLRLLDLTD  277 (300)
Q Consensus       227 ~L~l~~~~l~~-p--~~~~~l~~L~~L~l~~~~l~~lp~----~~~~l~~L~~L~l~~  277 (300)
                      +|++++|.+.. +  ..++.+++|++|++++|.++.+|.    .++.+++|++|++++
T Consensus        92 ~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A           92 HLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             EEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             EEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence            99999999988 4  889999999999999999998876    689999999999863

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.61  E-value=3.8e-15  Score=139.07  Aligned_cols=140  Identities=20%  Similarity=0.338  Sum_probs=119.9

Q ss_pred             EEEeecCCCcccCccccCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCcCC-cccccCCCCcEEEccCCC
Q 037969          156 AISLLNSSIHEVSEEFECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLP-SSIGLLANLQTLCLDQSM  234 (300)
Q Consensus       156 ~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp-~~i~~l~~L~~L~l~~~~  234 (300)
                      ..+.++..+.++|..+. ++++.|++++|.+  ..+|+..|.++++|++|+|++|.++.+| ..|+++++|++|+|++|.
T Consensus        35 ~~~c~~~~l~~vP~~lp-~~~~~LdLs~N~i--~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~  111 (635)
T 4g8a_A           35 TYQCMELNFYKIPDNLP-FSTKNLDLSFNPL--RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP  111 (635)
T ss_dssp             EEECTTSCCSSCCSSSC-TTCCEEECTTSCC--CEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred             EEECCCCCcCccCCCCC-cCCCEEEeeCCCC--CCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCc
Confidence            44555566778886442 4799999999999  8898877799999999999999999985 468999999999999999


Q ss_pred             CCC-c-ccccCCCCcCEEEccCCCCCCCchh-hcCCCCCCEEeccCCCCccc--cchhhhcCCCCCCeeeC
Q 037969          235 LGD-I-AIIGKLKNLEILSFLNSDIVRLPGE-LGQLTKLRLLDLTDCLQLKF--IVPNVLSSFTRLEELYM  300 (300)
Q Consensus       235 l~~-p-~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~l~~--lp~~~l~~L~~L~~L~l  300 (300)
                      ++. | ..+..+++|++|++++|+++.+|.. ++++++|++|++++|. +..  +|.. ++.+++|++|++
T Consensus       112 l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~-~~~l~~L~~L~L  180 (635)
T 4g8a_A          112 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEY-FSNLTNLEHLDL  180 (635)
T ss_dssp             CCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSC-CCCCCCCGG-GGGCTTCCEEEC
T ss_pred             CCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCc-cccCCCchh-hccchhhhhhcc
Confidence            988 4 5689999999999999999998864 8999999999999998 544  4554 889999999975

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.61  E-value=1.6e-15  Score=118.86  Aligned_cols=129  Identities=17%  Similarity=0.179  Sum_probs=110.4

Q ss_pred             cCccccCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCcCCcccccCCCCcEEEccCCCCCC-cccc-cCC
Q 037969          167 VSEEFECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPSSIGLLANLQTLCLDQSMLGD-IAII-GKL  244 (300)
Q Consensus       167 ~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~-p~~~-~~l  244 (300)
                      .+...++++|+.|++.+|.+  ..+|. +....++|++|++++|.++.+ +.++.+++|++|++++|.+.. |+.+ +.+
T Consensus        12 ~~~~~~~~~L~~L~l~~n~l--~~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l   87 (176)
T 1a9n_A           12 AAQYTNAVRDRELDLRGYKI--PVIEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQAL   87 (176)
T ss_dssp             SCEEECTTSCEEEECTTSCC--CSCCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHC
T ss_pred             HHhcCCcCCceEEEeeCCCC--chhHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcC
Confidence            34455788999999999999  77765 423344999999999999988 678999999999999999988 6554 899


Q ss_pred             CCcCEEEccCCCCCCCch--hhcCCCCCCEEeccCCCCccccchh---hhcCCCCCCeeeC
Q 037969          245 KNLEILSFLNSDIVRLPG--ELGQLTKLRLLDLTDCLQLKFIVPN---VLSSFTRLEELYM  300 (300)
Q Consensus       245 ~~L~~L~l~~~~l~~lp~--~~~~l~~L~~L~l~~~~~l~~lp~~---~l~~L~~L~~L~l  300 (300)
                      ++|++|++++|.++.+|.  .++.+++|++|++++|. +..+|..   .++.+++|+.|++
T Consensus        88 ~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~  147 (176)
T 1a9n_A           88 PDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDF  147 (176)
T ss_dssp             TTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETT
T ss_pred             CCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCC
Confidence            999999999999999987  79999999999999999 7777763   4889999999874

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.60  E-value=1.9e-15  Score=135.93  Aligned_cols=124  Identities=20%  Similarity=0.329  Sum_probs=105.1

Q ss_pred             CCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCcC-CcccccCCCCcEEEccCCCCCC--cccccCCCCcCEE
Q 037969          174 LQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSL-PSSIGLLANLQTLCLDQSMLGD--IAIIGKLKNLEIL  250 (300)
Q Consensus       174 ~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~~~l~~--p~~~~~l~~L~~L  250 (300)
                      ++|+.|++.+|.+  ..+++..++.+++|++|++++|.++.+ |..++.+++|++|++++|.+..  |..++.+++|++|
T Consensus       275 ~~L~~L~l~~n~l--~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  352 (455)
T 3v47_A          275 SGVKTCDLSKSKI--FALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVL  352 (455)
T ss_dssp             SCCCEEECCSSCC--CEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEE
T ss_pred             cCceEEEecCccc--cccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEE
Confidence            5788888888888  555555558899999999999999885 6678899999999999999876  5778899999999


Q ss_pred             EccCCCCCCC-chhhcCCCCCCEEeccCCCCccccchhhhcCCCCCCeeeC
Q 037969          251 SFLNSDIVRL-PGELGQLTKLRLLDLTDCLQLKFIVPNVLSSFTRLEELYM  300 (300)
Q Consensus       251 ~l~~~~l~~l-p~~~~~l~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l  300 (300)
                      ++++|.++.+ |..++.+++|++|++++|. ++.+|...+..+++|++|++
T Consensus       353 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l  402 (455)
T 3v47_A          353 DLSYNHIRALGDQSFLGLPNLKELALDTNQ-LKSVPDGIFDRLTSLQKIWL  402 (455)
T ss_dssp             ECCSSCCCEECTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEEC
T ss_pred             ECCCCcccccChhhccccccccEEECCCCc-cccCCHhHhccCCcccEEEc
Confidence            9999998866 6678999999999999998 77888776788999998875

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.60  E-value=2.8e-14  Score=128.82  Aligned_cols=157  Identities=21%  Similarity=0.304  Sum_probs=132.1

Q ss_pred             EEEeccccccCCCccccCCccEEEeecCCCcccCccccCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCc
Q 037969          135 FLVRNEVVWEWPDEDALKKCSAISLLNSSIHEVSEEFECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFS  214 (300)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~  214 (300)
                      ..+.+..+...+....+++++.|++++|.+..++....+++|+.|++.+|.+  ..++.  +..+++|++|++++|.++.
T Consensus       204 L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l--~~~~~--~~~l~~L~~L~l~~n~l~~  279 (466)
T 1o6v_A          204 LIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQI--SNLAP--LSGLTKLTELKLGANQISN  279 (466)
T ss_dssp             EECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCC--CCCGG--GTTCTTCSEEECCSSCCCC
T ss_pred             EEecCCcccccccccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCcc--ccchh--hhcCCCCCEEECCCCccCc
Confidence            3444555555555567889999999999998887766899999999999998  66665  5889999999999999998


Q ss_pred             CCcccccCCCCcEEEccCCCCCCcccccCCCCcCEEEccCCCCCCCchhhcCCCCCCEEeccCCCCccccchhhhcCCCC
Q 037969          215 LPSSIGLLANLQTLCLDQSMLGDIAIIGKLKNLEILSFLNSDIVRLPGELGQLTKLRLLDLTDCLQLKFIVPNVLSSFTR  294 (300)
Q Consensus       215 lp~~i~~l~~L~~L~l~~~~l~~p~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~l~~L~~  294 (300)
                      +|. +..+++|++|++++|.+.....++.+++|+.|++++|.++.++. ++.+++|+.|++++|. +..++.  +..+++
T Consensus       280 ~~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~-l~~~~~--l~~l~~  354 (466)
T 1o6v_A          280 ISP-LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFYNNK-VSDVSS--LANLTN  354 (466)
T ss_dssp             CGG-GTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSCCGG-GGGCTTCCEEECCSSC-CCCCGG--GTTCTT
T ss_pred             ccc-ccCCCccCeEEcCCCcccCchhhcCCCCCCEEECcCCcCCCchh-hccCccCCEeECCCCc-cCCchh--hccCCC
Confidence            876 88899999999999999884448899999999999999998765 7899999999999998 677754  889999


Q ss_pred             CCeeeC
Q 037969          295 LEELYM  300 (300)
Q Consensus       295 L~~L~l  300 (300)
                      |+.|++
T Consensus       355 L~~L~l  360 (466)
T 1o6v_A          355 INWLSA  360 (466)
T ss_dssp             CCEEEC
T ss_pred             CCEEeC
Confidence            999875

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.60  E-value=8.2e-16  Score=131.89  Aligned_cols=146  Identities=16%  Similarity=0.138  Sum_probs=123.1

Q ss_pred             ccCCccEEEeecCCCcccCcc-c-cCCCccEEecccCccccccCc-hhHHhcCCcccEEEeeCCcCCcCCcccccCCCCc
Q 037969          150 ALKKCSAISLLNSSIHEVSEE-F-ECLQLEFLHISQNTFVEVNIP-DNIFKGMKTLRVIDLTRMRLFSLPSSIGLLANLQ  226 (300)
Q Consensus       150 ~~~~l~~L~l~~~~~~~~~~~-~-~~~~L~~L~l~~~~~~~~~l~-~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~  226 (300)
                      .+++++.|++++|.+..++.. + .+++|+.|++++|.+  ..++ ..++..+++|++|++++|.++.+|.. ..+++|+
T Consensus       118 ~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l--~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~l~~L~  194 (317)
T 3o53_A          118 RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEI--DTVNFAELAASSDTLEHLNLQYNFIYDVKGQ-VVFAKLK  194 (317)
T ss_dssp             CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCC--CEEEGGGGGGGTTTCCEEECTTSCCCEEECC-CCCTTCC
T ss_pred             ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCC--CcccHHHHhhccCcCCEEECCCCcCcccccc-cccccCC
Confidence            467899999999999776543 3 789999999999998  5544 44445789999999999999988654 4589999


Q ss_pred             EEEccCCCCCC-cccccCCCCcCEEEccCCCCCCCchhhcCCCCCCEEeccCCCCc-cccchhhhcCCCCCCeee
Q 037969          227 TLCLDQSMLGD-IAIIGKLKNLEILSFLNSDIVRLPGELGQLTKLRLLDLTDCLQL-KFIVPNVLSSFTRLEELY  299 (300)
Q Consensus       227 ~L~l~~~~l~~-p~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l-~~lp~~~l~~L~~L~~L~  299 (300)
                      +|++++|.+.. |+.+..+++|++|++++|.++.+|..+..+++|+.|++++|... ..+|.. ++.+++|+.|+
T Consensus       195 ~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~-~~~~~~L~~l~  268 (317)
T 3o53_A          195 TLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDF-FSKNQRVQTVA  268 (317)
T ss_dssp             EEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCBHHHHHHH-HHTCHHHHHHH
T ss_pred             EEECCCCcCCcchhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCccCcCHHHH-HhccccceEEE
Confidence            99999999998 77899999999999999999999999999999999999999954 355544 77887776654

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.60  E-value=5.7e-15  Score=142.67  Aligned_cols=161  Identities=22%  Similarity=0.284  Sum_probs=128.5

Q ss_pred             EEEeccccccCCCccccCCccEEEeecCCCccc-Cccc-cCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcC
Q 037969          135 FLVRNEVVWEWPDEDALKKCSAISLLNSSIHEV-SEEF-ECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRL  212 (300)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~-~~~~-~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~  212 (300)
                      .......+..+|.  .+++++.|++++|.+..+ +..+ .+++|++|++++|... ..+++..|.++++|++|+|++|.+
T Consensus         9 ~dcs~~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~-~~i~~~~f~~L~~L~~L~Ls~N~l   85 (844)
T 3j0a_A            9 AFYRFCNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTP-LTIDKEAFRNLPNLRILDLGSSKI   85 (844)
T ss_dssp             EEESCCCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCC-CEECTTTTSSCTTCCEEECTTCCC
T ss_pred             EEccCCCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCc-cccCHHHhcCCCCCCEEECCCCcC
Confidence            4445566777886  678999999999999665 3444 9999999999998552 667555569999999999999999


Q ss_pred             CcC-CcccccCCCCcEEEccCCCCCC--ccc--ccCCCCcCEEEccCCCCCCCc--hhhcCCCCCCEEeccCCCCccccc
Q 037969          213 FSL-PSSIGLLANLQTLCLDQSMLGD--IAI--IGKLKNLEILSFLNSDIVRLP--GELGQLTKLRLLDLTDCLQLKFIV  285 (300)
Q Consensus       213 ~~l-p~~i~~l~~L~~L~l~~~~l~~--p~~--~~~l~~L~~L~l~~~~l~~lp--~~~~~l~~L~~L~l~~~~~l~~lp  285 (300)
                      +.+ |..++++++|++|++++|.+..  |..  ++.+++|++|++++|.++.++  ..++++++|++|++++|......|
T Consensus        86 ~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~  165 (844)
T 3j0a_A           86 YFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCE  165 (844)
T ss_dssp             CEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCS
T ss_pred             cccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCH
Confidence            985 8889999999999999999886  544  899999999999999988653  569999999999999998444444


Q ss_pred             hhhhcCC--CCCCeee
Q 037969          286 PNVLSSF--TRLEELY  299 (300)
Q Consensus       286 ~~~l~~L--~~L~~L~  299 (300)
                      .. ++.+  ++|+.|+
T Consensus       166 ~~-l~~l~~~~L~~L~  180 (844)
T 3j0a_A          166 HE-LEPLQGKTLSFFS  180 (844)
T ss_dssp             GG-GHHHHHCSSCCCE
T ss_pred             HH-cccccCCccceEE
Confidence            43 5554  5555543

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.60  E-value=9.8e-15  Score=116.07  Aligned_cols=121  Identities=24%  Similarity=0.331  Sum_probs=107.6

Q ss_pred             cEEEeecCCCcccCccccCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCcCC-cccccCCCCcEEEccCC
Q 037969          155 SAISLLNSSIHEVSEEFECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLP-SSIGLLANLQTLCLDQS  233 (300)
Q Consensus       155 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp-~~i~~l~~L~~L~l~~~  233 (300)
                      +.++++++.+..+|..+ .++++.|++.+|.+  ..+|.. |..+++|++|++++|.++.++ ..+..+++|++|++++|
T Consensus        13 ~~l~~~~~~l~~ip~~~-~~~l~~L~L~~n~i--~~ip~~-~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N   88 (193)
T 2wfh_A           13 TVVRCSNKGLKVLPKGI-PRDVTELYLDGNQF--TLVPKE-LSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN   88 (193)
T ss_dssp             TEEECTTSCCSSCCSCC-CTTCCEEECCSSCC--CSCCGG-GGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEcCCCCCCcCCCCC-CCCCCEEECCCCcC--chhHHH-hhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence            57888899998888754 36899999999999  889865 489999999999999999975 56899999999999999


Q ss_pred             CCCC--cccccCCCCcCEEEccCCCCCCCchh-hcCCCCCCEEeccCCC
Q 037969          234 MLGD--IAIIGKLKNLEILSFLNSDIVRLPGE-LGQLTKLRLLDLTDCL  279 (300)
Q Consensus       234 ~l~~--p~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~  279 (300)
                      .+..  +..+..+++|++|++++|.++.+|.. +..+++|++|++++|+
T Consensus        89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~  137 (193)
T 2wfh_A           89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANP  137 (193)
T ss_dssp             CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred             ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCC
Confidence            9988  46799999999999999999998875 7889999999999987

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.60  E-value=1.5e-14  Score=124.79  Aligned_cols=146  Identities=25%  Similarity=0.340  Sum_probs=74.6

Q ss_pred             cccCCccEEEeecCCCccc-Cccc-cCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCcCCc-ccccCCCC
Q 037969          149 DALKKCSAISLLNSSIHEV-SEEF-ECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPS-SIGLLANL  225 (300)
Q Consensus       149 ~~~~~l~~L~l~~~~~~~~-~~~~-~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L  225 (300)
                      ..+++++.|++++|.+..+ |..+ .+++|+.|++++|.+  ..+|..++   ++|++|++++|.++.+|. .++.+++|
T Consensus        75 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l--~~l~~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L  149 (332)
T 2ft3_A           75 KGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHL--VEIPPNLP---SSLVELRIHDNRIRKVPKGVFSGLRNM  149 (332)
T ss_dssp             TTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCC--CSCCSSCC---TTCCEEECCSSCCCCCCSGGGSSCSSC
T ss_pred             hCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcC--CccCcccc---ccCCEEECCCCccCccCHhHhCCCccC
Confidence            3444555555555555433 2222 455555555555555  45554331   455555555555555433 35556666


Q ss_pred             cEEEccCCCCCC----cccccCC--------------------CCcCEEEccCCCCCCCc-hhhcCCCCCCEEeccCCCC
Q 037969          226 QTLCLDQSMLGD----IAIIGKL--------------------KNLEILSFLNSDIVRLP-GELGQLTKLRLLDLTDCLQ  280 (300)
Q Consensus       226 ~~L~l~~~~l~~----p~~~~~l--------------------~~L~~L~l~~~~l~~lp-~~~~~l~~L~~L~l~~~~~  280 (300)
                      ++|++++|.+..    +..+..+                    ++|++|++++|.++.++ ..+.++++|++|++++|. 
T Consensus       150 ~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~-  228 (332)
T 2ft3_A          150 NCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQ-  228 (332)
T ss_dssp             CEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSC-
T ss_pred             CEEECCCCccccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCc-
Confidence            666666665531    2333322                    23344444444444333 345566666666666666 


Q ss_pred             ccccchhhhcCCCCCCeeeC
Q 037969          281 LKFIVPNVLSSFTRLEELYM  300 (300)
Q Consensus       281 l~~lp~~~l~~L~~L~~L~l  300 (300)
                      +..++...++.+++|++|++
T Consensus       229 l~~~~~~~~~~l~~L~~L~L  248 (332)
T 2ft3_A          229 IRMIENGSLSFLPTLRELHL  248 (332)
T ss_dssp             CCCCCTTGGGGCTTCCEEEC
T ss_pred             CCcCChhHhhCCCCCCEEEC
Confidence            45555433666666666654

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.59  E-value=1.9e-15  Score=129.18  Aligned_cols=144  Identities=15%  Similarity=0.134  Sum_probs=94.0

Q ss_pred             cCCccEEEeecCCCcccCc-cc-cCCCccEEecccCcccccc--Cch-hHHhcCCcccEEEeeCCcCCcCCcc----ccc
Q 037969          151 LKKCSAISLLNSSIHEVSE-EF-ECLQLEFLHISQNTFVEVN--IPD-NIFKGMKTLRVIDLTRMRLFSLPSS----IGL  221 (300)
Q Consensus       151 ~~~l~~L~l~~~~~~~~~~-~~-~~~~L~~L~l~~~~~~~~~--l~~-~~~~~l~~L~~L~l~~~~~~~lp~~----i~~  221 (300)
                      +++++.|++++|.+..++. .+ .+++|++|++++|.+. +.  ++. ..+..+++|++|++++|.++.+|..    ++.
T Consensus       144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~  222 (310)
T 4glp_A          144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGL-GERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAA  222 (310)
T ss_dssp             CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTC-HHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHH
T ss_pred             ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCc-cchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhc
Confidence            5567777777777754443 23 6777777777777641 11  111 1124566777777777777655442    456


Q ss_pred             CCCCcEEEccCCCCCC--cccccCC---CCcCEEEccCCCCCCCchhhcCCCCCCEEeccCCCCccccchhhhcCCCCCC
Q 037969          222 LANLQTLCLDQSMLGD--IAIIGKL---KNLEILSFLNSDIVRLPGELGQLTKLRLLDLTDCLQLKFIVPNVLSSFTRLE  296 (300)
Q Consensus       222 l~~L~~L~l~~~~l~~--p~~~~~l---~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~l~~L~~L~  296 (300)
                      +++|++|++++|.+..  |+.++.+   ++|++|++++|.++.+|..+.  ++|++|++++|. +..+|.  +..+++|+
T Consensus       223 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~-l~~~~~--~~~l~~L~  297 (310)
T 4glp_A          223 GVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNR-LNRAPQ--PDELPEVD  297 (310)
T ss_dssp             TCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCC-CCSCCC--TTSCCCCS
T ss_pred             CCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhc--CCCCEEECCCCc-CCCCch--hhhCCCcc
Confidence            6777777887777765  5556665   578888888777777777664  678888888777 666654  56777777


Q ss_pred             eeeC
Q 037969          297 ELYM  300 (300)
Q Consensus       297 ~L~l  300 (300)
                      +|++
T Consensus       298 ~L~L  301 (310)
T 4glp_A          298 NLTL  301 (310)
T ss_dssp             CEEC
T ss_pred             EEEC
Confidence            7764

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.59  E-value=3.3e-15  Score=141.65  Aligned_cols=112  Identities=28%  Similarity=0.342  Sum_probs=86.1

Q ss_pred             cCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCcCCcccccCCCCcEEEccCCCCCC-cccccCCCCcCEE
Q 037969          172 ECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPSSIGLLANLQTLCLDQSMLGD-IAIIGKLKNLEIL  250 (300)
Q Consensus       172 ~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~-p~~~~~l~~L~~L  250 (300)
                      .+++|+.|++++|.+  ..+|..++ .+++|++|+|++|.++.+|..++.+++|++|+|++|.+.. |..++.+++|++|
T Consensus       222 ~l~~L~~L~Ls~n~l--~~l~~~~~-~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L  298 (727)
T 4b8c_D          222 DDQLWHALDLSNLQI--FNISANIF-KYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYF  298 (727)
T ss_dssp             CCCCCCEEECTTSCC--SCCCGGGG-GCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEE
T ss_pred             cCCCCcEEECCCCCC--CCCChhhc-CCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEE
Confidence            677788888888877  67777764 6788888888888888778778888888888888888777 7777888888888


Q ss_pred             EccCCCCCCCchhhcCCCCCCEEeccCCCCccccch
Q 037969          251 SFLNSDIVRLPGELGQLTKLRLLDLTDCLQLKFIVP  286 (300)
Q Consensus       251 ~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~  286 (300)
                      +|++|.++.+|..++++++|++|+|++|...+.+|.
T Consensus       299 ~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~  334 (727)
T 4b8c_D          299 YFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLK  334 (727)
T ss_dssp             ECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHHH
T ss_pred             ECCCCCCCccChhhhcCCCccEEeCCCCccCCCChH
Confidence            888887778887788888888888888873334443

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.59  E-value=1.9e-14  Score=114.43  Aligned_cols=121  Identities=18%  Similarity=0.247  Sum_probs=96.7

Q ss_pred             EEEeccccccCCCccccCCccEEEeecCCCcccCccc-cCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCC
Q 037969          135 FLVRNEVVWEWPDEDALKKCSAISLLNSSIHEVSEEF-ECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLF  213 (300)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~  213 (300)
                      ....+..+..+|. ...++++.|++++|.+..+|..+ .+++|+.|++++|.+  ..++...|.++++|++|++++|.++
T Consensus        15 l~~~~~~l~~ip~-~~~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i--~~i~~~~f~~l~~L~~L~Ls~N~l~   91 (193)
T 2wfh_A           15 VRCSNKGLKVLPK-GIPRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRI--STLSNQSFSNMTQLLTLILSYNRLR   91 (193)
T ss_dssp             EECTTSCCSSCCS-CCCTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCC--CCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             EEcCCCCCCcCCC-CCCCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcC--CEeCHhHccCCCCCCEEECCCCccC
Confidence            3445555666665 34567889999999888887655 888999999999988  7777766788899999999999998


Q ss_pred             cCC-cccccCCCCcEEEccCCCCCC-c-ccccCCCCcCEEEccCCCCC
Q 037969          214 SLP-SSIGLLANLQTLCLDQSMLGD-I-AIIGKLKNLEILSFLNSDIV  258 (300)
Q Consensus       214 ~lp-~~i~~l~~L~~L~l~~~~l~~-p-~~~~~l~~L~~L~l~~~~l~  258 (300)
                      .+| ..++.+++|++|++++|.+.. | ..+..+++|+.|++++|.+.
T Consensus        92 ~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A           92 CIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             BCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             EeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence            875 468888999999999998887 4 45788889999999888764

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.59  E-value=1.9e-14  Score=132.19  Aligned_cols=146  Identities=16%  Similarity=0.247  Sum_probs=107.6

Q ss_pred             EEEEeccccccCCCccccCCccEEEeecCCCcccCccccCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCC
Q 037969          134 VFLVRNEVVWEWPDEDALKKCSAISLLNSSIHEVSEEFECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLF  213 (300)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~  213 (300)
                      ...+.++.+..+|  ..+++++.|++++|.+..+|. +. .+|+.|++++|.+  ..+|.    .+++|++|++++|.++
T Consensus        84 ~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l~~ip~-l~-~~L~~L~Ls~N~l--~~lp~----~l~~L~~L~Ls~N~l~  153 (571)
T 3cvr_A           84 VLEITQNALISLP--ELPASLEYLDACDNRLSTLPE-LP-ASLKHLDVDNNQL--TMLPE----LPALLEYINADNNQLT  153 (571)
T ss_dssp             EEECCSSCCSCCC--CCCTTCCEEECCSSCCSCCCC-CC-TTCCEEECCSSCC--SCCCC----CCTTCCEEECCSSCCS
T ss_pred             EEECcCCCCcccc--cccCCCCEEEccCCCCCCcch-hh-cCCCEEECCCCcC--CCCCC----cCccccEEeCCCCccC
Confidence            3455566666666  557788888888888877777 31 2788888888887  66776    4678888888888888


Q ss_pred             cCCcccccCCCCcEEEccCCCCCC-cccccCCCCcCEEEccCCCCCCCchhhcCCCCC-------CEEeccCCCCccccc
Q 037969          214 SLPSSIGLLANLQTLCLDQSMLGD-IAIIGKLKNLEILSFLNSDIVRLPGELGQLTKL-------RLLDLTDCLQLKFIV  285 (300)
Q Consensus       214 ~lp~~i~~l~~L~~L~l~~~~l~~-p~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L-------~~L~l~~~~~l~~lp  285 (300)
                      .+|.   .+++|++|++++|.+.. |. ++  ++|++|++++|.++.+|. +..  +|       +.|++++|. +..+|
T Consensus       154 ~lp~---~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~L~~lp~-~~~--~L~~~~~~L~~L~Ls~N~-l~~lp  223 (571)
T 3cvr_A          154 MLPE---LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNLLESLPA-VPV--RNHHSEETEIFFRCRENR-ITHIP  223 (571)
T ss_dssp             CCCC---CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSCCSSCCC-CC----------CCEEEECCSSC-CCCCC
T ss_pred             cCCC---cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCCCCchhh-HHH--hhhcccccceEEecCCCc-ceecC
Confidence            8776   46778888888888777 55 54  788888888888888877 554  66       888888887 77788


Q ss_pred             hhhhcCCCCCCeeeC
Q 037969          286 PNVLSSFTRLEELYM  300 (300)
Q Consensus       286 ~~~l~~L~~L~~L~l  300 (300)
                      .. +..+++|+.|+|
T Consensus       224 ~~-l~~l~~L~~L~L  237 (571)
T 3cvr_A          224 EN-ILSLDPTCTIIL  237 (571)
T ss_dssp             GG-GGGSCTTEEEEC
T ss_pred             HH-HhcCCCCCEEEe
Confidence            76 666888888765

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.58  E-value=1.8e-14  Score=129.64  Aligned_cols=151  Identities=17%  Similarity=0.170  Sum_probs=108.6

Q ss_pred             EEEeccccccCCCccccCCccEEEeecCCCcccCccccCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCc
Q 037969          135 FLVRNEVVWEWPDEDALKKCSAISLLNSSIHEVSEEFECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFS  214 (300)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~  214 (300)
                      ....+..+..+|....+++++.|++++|.+..+| ...+++|++|++++|.+  ..++   ++.+++|++|++++|.++.
T Consensus        47 L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N~l--~~~~---~~~l~~L~~L~L~~N~l~~  120 (457)
T 3bz5_A           47 LDCHNSSITDMTGIEKLTGLTKLICTSNNITTLD-LSQNTNLTYLACDSNKL--TNLD---VTPLTKLTYLNCDTNKLTK  120 (457)
T ss_dssp             EECCSSCCCCCTTGGGCTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCC--SCCC---CTTCTTCCEEECCSSCCSC
T ss_pred             EEccCCCcccChhhcccCCCCEEEccCCcCCeEc-cccCCCCCEEECcCCCC--ceee---cCCCCcCCEEECCCCcCCe
Confidence            3444555555665566777888888888776665 44777888888888777  5554   3677788888888887777


Q ss_pred             CCcccccCCCCcEEEccCCCCCCcccccCCCCcCEEEccCC-CCCCCchhhcCCCCCCEEeccCCCCccccchhhhcCCC
Q 037969          215 LPSSIGLLANLQTLCLDQSMLGDIAIIGKLKNLEILSFLNS-DIVRLPGELGQLTKLRLLDLTDCLQLKFIVPNVLSSFT  293 (300)
Q Consensus       215 lp~~i~~l~~L~~L~l~~~~l~~p~~~~~l~~L~~L~l~~~-~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~l~~L~  293 (300)
                      +|  ++.+++|++|++++|.+... .++.+++|++|++++| .+..+  .++.+++|++|++++|. ++.+|   ++.++
T Consensus       121 l~--~~~l~~L~~L~l~~N~l~~l-~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~-l~~l~---l~~l~  191 (457)
T 3bz5_A          121 LD--VSQNPLLTYLNCARNTLTEI-DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNK-ITELD---VSQNK  191 (457)
T ss_dssp             CC--CTTCTTCCEEECTTSCCSCC-CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSC-CCCCC---CTTCT
T ss_pred             ec--CCCCCcCCEEECCCCcccee-ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCc-cceec---cccCC
Confidence            75  67778888888888877763 2677778888888887 45555  36778888888888887 66666   56778


Q ss_pred             CCCeeeC
Q 037969          294 RLEELYM  300 (300)
Q Consensus       294 ~L~~L~l  300 (300)
                      +|+.|++
T Consensus       192 ~L~~L~l  198 (457)
T 3bz5_A          192 LLNRLNC  198 (457)
T ss_dssp             TCCEEEC
T ss_pred             CCCEEEC
Confidence            8887764

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.58  E-value=1.1e-14  Score=124.56  Aligned_cols=146  Identities=20%  Similarity=0.169  Sum_probs=92.0

Q ss_pred             cccCCccEEEeecCCCcccCccc-cC-----CCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCc---CCccc
Q 037969          149 DALKKCSAISLLNSSIHEVSEEF-EC-----LQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFS---LPSSI  219 (300)
Q Consensus       149 ~~~~~l~~L~l~~~~~~~~~~~~-~~-----~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~---lp~~i  219 (300)
                      ..+++++.|++++|.+..+|..+ .+     ++|++|++++|.+  ..++...+..+++|++|++++|.+..   +|..+
T Consensus       118 ~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l--~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~  195 (312)
T 1wwl_A          118 ATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHS--LNFSCEQVRVFPALSTLDLSDNPELGERGLISAL  195 (312)
T ss_dssp             CCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSC--CCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHS
T ss_pred             hcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCC--ccchHHHhccCCCCCEEECCCCCcCcchHHHHHH
Confidence            45666777777777775555443 33     6777777777777  55554444667777777777776543   24444


Q ss_pred             --ccCCCCcEEEccCCCCCC-c----ccccCCCCcCEEEccCCCCCCCc--hhhcCCCCCCEEeccCCCCccccchhhhc
Q 037969          220 --GLLANLQTLCLDQSMLGD-I----AIIGKLKNLEILSFLNSDIVRLP--GELGQLTKLRLLDLTDCLQLKFIVPNVLS  290 (300)
Q Consensus       220 --~~l~~L~~L~l~~~~l~~-p----~~~~~l~~L~~L~l~~~~l~~lp--~~~~~l~~L~~L~l~~~~~l~~lp~~~l~  290 (300)
                        +.+++|++|++++|.+.. +    ..+..+++|++|++++|.++..+  ..+..+++|++|++++|. ++.+|.. +.
T Consensus       196 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~-l~~ip~~-~~  273 (312)
T 1wwl_A          196 CPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTG-LKQVPKG-LP  273 (312)
T ss_dssp             CTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSC-CSSCCSS-CC
T ss_pred             HhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCc-cChhhhh-cc
Confidence              667777777777777664 2    22345677777777777776543  234556777777777777 5567665 33


Q ss_pred             CCCCCCeeeC
Q 037969          291 SFTRLEELYM  300 (300)
Q Consensus       291 ~L~~L~~L~l  300 (300)
                        ++|++|++
T Consensus       274 --~~L~~L~L  281 (312)
T 1wwl_A          274 --AKLSVLDL  281 (312)
T ss_dssp             --SEEEEEEC
T ss_pred             --CCceEEEC
Confidence              56666654

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.58  E-value=5.6e-15  Score=126.42  Aligned_cols=143  Identities=20%  Similarity=0.185  Sum_probs=101.2

Q ss_pred             CCccEEEeecCCCcccC-ccc-cCCCccEEecccCcccccc--CchhH-HhcCCcccEEEeeCCcCCcCC---c-ccccC
Q 037969          152 KKCSAISLLNSSIHEVS-EEF-ECLQLEFLHISQNTFVEVN--IPDNI-FKGMKTLRVIDLTRMRLFSLP---S-SIGLL  222 (300)
Q Consensus       152 ~~l~~L~l~~~~~~~~~-~~~-~~~~L~~L~l~~~~~~~~~--l~~~~-~~~l~~L~~L~l~~~~~~~lp---~-~i~~l  222 (300)
                      ++++.|++++|.+..++ ..+ .+++|+.|++++|.+. +.  ++..+ +..+++|++|++++|.++.+|   . .+..+
T Consensus       149 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l  227 (312)
T 1wwl_A          149 PGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPEL-GERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAAR  227 (312)
T ss_dssp             TTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTC-HHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTT
T ss_pred             CCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcC-cchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcC
Confidence            67888888888886655 333 7888888888888751 22  12221 256788888888888887433   2 23466


Q ss_pred             CCCcEEEccCCCCCC-c--ccccCCCCcCEEEccCCCCCCCchhhcCCCCCCEEeccCCCCccccchhhhcCCCCCCeee
Q 037969          223 ANLQTLCLDQSMLGD-I--AIIGKLKNLEILSFLNSDIVRLPGELGQLTKLRLLDLTDCLQLKFIVPNVLSSFTRLEELY  299 (300)
Q Consensus       223 ~~L~~L~l~~~~l~~-p--~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~  299 (300)
                      ++|++|++++|.+.. +  +.+..+++|++|++++|.++.+|..+.  ++|++|++++|+ +..+|.  +..+++|++|+
T Consensus       228 ~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N~-l~~~p~--~~~l~~L~~L~  302 (312)
T 1wwl_A          228 VQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP--AKLSVLDLSYNR-LDRNPS--PDELPQVGNLS  302 (312)
T ss_dssp             CCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC--SEEEEEECCSSC-CCSCCC--TTTSCEEEEEE
T ss_pred             CCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhcc--CCceEEECCCCC-CCCChh--HhhCCCCCEEe
Confidence            788888888888776 3  455667888888888888888887766  788888888887 666665  67788887776


Q ss_pred             C
Q 037969          300 M  300 (300)
Q Consensus       300 l  300 (300)
                      +
T Consensus       303 L  303 (312)
T 1wwl_A          303 L  303 (312)
T ss_dssp             C
T ss_pred             c
Confidence            4

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.58  E-value=1e-14  Score=134.36  Aligned_cols=121  Identities=18%  Similarity=0.252  Sum_probs=108.4

Q ss_pred             CccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCcCCcccccCCCCcEEEccCCCCCCcccccCCCCcCEEEccC
Q 037969          175 QLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPSSIGLLANLQTLCLDQSMLGDIAIIGKLKNLEILSFLN  254 (300)
Q Consensus       175 ~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~p~~~~~l~~L~~L~l~~  254 (300)
                      .|+.|++++|.+  ..+|.  ++.+++|++|++++|.++.+|..++.+++|++|++++|.++.++.++.+++|++|++++
T Consensus       442 ~L~~L~Ls~n~l--~~lp~--~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~l~~l~~L~~L~Ls~  517 (567)
T 1dce_A          442 DVRVLHLAHKDL--TVLCH--LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCN  517 (567)
T ss_dssp             TCSEEECTTSCC--SSCCC--GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCS
T ss_pred             CceEEEecCCCC--CCCcC--ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCcccCCCCCCcEEECCC
Confidence            688999999999  78887  58999999999999999999999999999999999999999844899999999999999


Q ss_pred             CCCCCC--chhhcCCCCCCEEeccCCCCccccchh---hhcCCCCCCeeeC
Q 037969          255 SDIVRL--PGELGQLTKLRLLDLTDCLQLKFIVPN---VLSSFTRLEELYM  300 (300)
Q Consensus       255 ~~l~~l--p~~~~~l~~L~~L~l~~~~~l~~lp~~---~l~~L~~L~~L~l  300 (300)
                      |.++.+  |..++.+++|+.|++++|. +..+|+.   .+..+++|+.|++
T Consensus       518 N~l~~~~~p~~l~~l~~L~~L~L~~N~-l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          518 NRLQQSAAIQPLVSCPRLVLLNLQGNS-LCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             SCCCSSSTTGGGGGCTTCCEEECTTSG-GGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             CCCCCCCCcHHHhcCCCCCEEEecCCc-CCCCccHHHHHHHHCcccCccCC
Confidence            999988  8999999999999999999 6666642   2455899999875

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.58  E-value=2e-14  Score=135.72  Aligned_cols=162  Identities=20%  Similarity=0.257  Sum_probs=131.8

Q ss_pred             EEEeccccccCCC--ccccCCccEEEeecCCCcccC-ccc-cCCCccEEecccCccccccCchhHHhcCCcccEEEeeCC
Q 037969          135 FLVRNEVVWEWPD--EDALKKCSAISLLNSSIHEVS-EEF-ECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRM  210 (300)
Q Consensus       135 ~~~~~~~~~~~~~--~~~~~~l~~L~l~~~~~~~~~-~~~-~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~  210 (300)
                      ..+.++.+..++.  ...+++++.|++++|.+..++ ..+ ++++|++|++++|.+  ..+|+..|.++++|++|++++|
T Consensus        30 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l--~~l~~~~~~~l~~L~~L~L~~n  107 (680)
T 1ziw_A           30 LNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNEL--SQLSDKTFAFCTNLTELHLMSN  107 (680)
T ss_dssp             EECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCC--CCCCTTTTTTCTTCSEEECCSS
T ss_pred             EECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCcc--CccChhhhccCCCCCEEECCCC
Confidence            3445555555554  366889999999999996654 444 899999999999999  8888876689999999999999


Q ss_pred             cCCcCC-cccccCCCCcEEEccCCCCCC--cccccCCCCcCEEEccCCCCCCCchh-h--cCCCCCCEEeccCCCCcccc
Q 037969          211 RLFSLP-SSIGLLANLQTLCLDQSMLGD--IAIIGKLKNLEILSFLNSDIVRLPGE-L--GQLTKLRLLDLTDCLQLKFI  284 (300)
Q Consensus       211 ~~~~lp-~~i~~l~~L~~L~l~~~~l~~--p~~~~~l~~L~~L~l~~~~l~~lp~~-~--~~l~~L~~L~l~~~~~l~~l  284 (300)
                      .++.+| ..++.+++|++|++++|.+..  |..++.+++|++|++++|.++.++.. +  ..+++|++|++++|. +..+
T Consensus       108 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~  186 (680)
T 1ziw_A          108 SIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQ-IKEF  186 (680)
T ss_dssp             CCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCC-CCCB
T ss_pred             ccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCc-cccc
Confidence            999875 679999999999999999887  57789999999999999999977664 3  356899999999998 6666


Q ss_pred             chhhhcCCCCCCeee
Q 037969          285 VPNVLSSFTRLEELY  299 (300)
Q Consensus       285 p~~~l~~L~~L~~L~  299 (300)
                      ++..++.+++|+.|+
T Consensus       187 ~~~~~~~l~~L~~L~  201 (680)
T 1ziw_A          187 SPGCFHAIGRLFGLF  201 (680)
T ss_dssp             CTTGGGGSSEECEEE
T ss_pred             Chhhhhhhhhhhhhh
Confidence            554477776665553

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.58  E-value=1.5e-14  Score=114.94  Aligned_cols=123  Identities=20%  Similarity=0.358  Sum_probs=99.3

Q ss_pred             cEEEeecCCCcccCccccCCCccEEecccCccccccCchh-HHhcCCcccEEEeeCCcCCcC-CcccccCCCCcEEEccC
Q 037969          155 SAISLLNSSIHEVSEEFECLQLEFLHISQNTFVEVNIPDN-IFKGMKTLRVIDLTRMRLFSL-PSSIGLLANLQTLCLDQ  232 (300)
Q Consensus       155 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~-~~~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~  232 (300)
                      +.++++++.++.+|..+. ++++.|++.+|.+  ..++.. .+..+++|++|++++|.++.+ |..++.+++|++|++++
T Consensus        11 ~~l~~s~~~l~~ip~~~~-~~l~~L~l~~n~i--~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~   87 (192)
T 1w8a_A           11 TTVDCTGRGLKEIPRDIP-LHTTELLLNDNEL--GRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TEEECTTSCCSSCCSCCC-TTCSEEECCSCCC--CSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CEEEcCCCCcCcCccCCC-CCCCEEECCCCcC--CccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence            577888888888887542 3888899998888  666653 457888999999999988886 67788889999999999


Q ss_pred             CCCCC--cccccCCCCcCEEEccCCCCCCC-chhhcCCCCCCEEeccCCCC
Q 037969          233 SMLGD--IAIIGKLKNLEILSFLNSDIVRL-PGELGQLTKLRLLDLTDCLQ  280 (300)
Q Consensus       233 ~~l~~--p~~~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l~~~~~  280 (300)
                      |.+..  +..+..+++|++|++++|.++.+ |..+..+++|++|++++|..
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l  138 (192)
T 1w8a_A           88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPF  138 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCB
T ss_pred             CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCc
Confidence            98887  35588888999999999988855 66788888999999988874

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.58  E-value=1.1e-14  Score=133.17  Aligned_cols=148  Identities=18%  Similarity=0.225  Sum_probs=90.4

Q ss_pred             EeccccccCCCccccCCccEEEeecCCCcccCc-cc-cCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCc
Q 037969          137 VRNEVVWEWPDEDALKKCSAISLLNSSIHEVSE-EF-ECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFS  214 (300)
Q Consensus       137 ~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~-~~-~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~  214 (300)
                      ..+..+..+|.. ..++++.|++++|.+..++. .+ .+++|++|++++|.+  ..+++..|.++++|++|++++|.++.
T Consensus         7 ls~n~l~~ip~~-~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l--~~~~~~~~~~l~~L~~L~Ls~N~l~~   83 (520)
T 2z7x_B            7 RSKNGLIHVPKD-LSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRI--QYLDISVFKFNQELEYLDLSHNKLVK   83 (520)
T ss_dssp             CTTSCCSSCCCS-CCTTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCC--CEEEGGGGTTCTTCCEEECCSSCCCE
T ss_pred             cCCCCccccccc-ccccccEEECCCCcccccChhhccccccccEEecCCCcc--CCcChHHhhcccCCCEEecCCCceee
Confidence            334445555542 22667777777777655542 22 667777777777766  55544344667777777777777776


Q ss_pred             CCcccccCCCCcEEEccCCCCCC---cccccCCCCcCEEEccCCCCCCCchhhcCCCCC--CEEeccCCCC--ccccchh
Q 037969          215 LPSSIGLLANLQTLCLDQSMLGD---IAIIGKLKNLEILSFLNSDIVRLPGELGQLTKL--RLLDLTDCLQ--LKFIVPN  287 (300)
Q Consensus       215 lp~~i~~l~~L~~L~l~~~~l~~---p~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L--~~L~l~~~~~--l~~lp~~  287 (300)
                      +|..  .+++|++|++++|.+..   |..++.+++|++|++++|.++.  ..++.+++|  ++|++++|..  .+..|..
T Consensus        84 lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~  159 (520)
T 2z7x_B           84 ISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGETYGEKEDPEG  159 (520)
T ss_dssp             EECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECTTTTSSCCTTT
T ss_pred             cCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch--hhccccccceeeEEEeeccccccccccccc
Confidence            6655  66777777777776654   4567777777777777776654  245556666  7777777664  3444443


Q ss_pred             hhcCC
Q 037969          288 VLSSF  292 (300)
Q Consensus       288 ~l~~L  292 (300)
                       ++.+
T Consensus       160 -l~~l  163 (520)
T 2z7x_B          160 -LQDF  163 (520)
T ss_dssp             -TTTC
T ss_pred             -cccc
Confidence             4443

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.58  E-value=1e-14  Score=115.91  Aligned_cols=118  Identities=19%  Similarity=0.256  Sum_probs=103.8

Q ss_pred             cEEecccCccccccCchhHHhcCCcccEEEeeCCcCCcCCcc--cccCCCCcEEEccCCCCCC--cccccCCCCcCEEEc
Q 037969          177 EFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPSS--IGLLANLQTLCLDQSMLGD--IAIIGKLKNLEILSF  252 (300)
Q Consensus       177 ~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~--i~~l~~L~~L~l~~~~l~~--p~~~~~l~~L~~L~l  252 (300)
                      ++++++++.+  ..+|..++   ..+++|++++|.++.+|..  ++.+++|++|++++|.+..  |..++.+++|++|++
T Consensus        11 ~~l~~s~~~l--~~ip~~~~---~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L   85 (192)
T 1w8a_A           11 TTVDCTGRGL--KEIPRDIP---LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQL   85 (192)
T ss_dssp             TEEECTTSCC--SSCCSCCC---TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred             CEEEcCCCCc--CcCccCCC---CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEEC
Confidence            7899999999  89998663   4899999999999998753  8999999999999999988  678999999999999


Q ss_pred             cCCCCCCCchh-hcCCCCCCEEeccCCCCccccchhhhcCCCCCCeeeC
Q 037969          253 LNSDIVRLPGE-LGQLTKLRLLDLTDCLQLKFIVPNVLSSFTRLEELYM  300 (300)
Q Consensus       253 ~~~~l~~lp~~-~~~l~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l  300 (300)
                      ++|.++.+|.. +..+++|++|++++|. +..+++..++.+++|++|++
T Consensus        86 s~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L  133 (192)
T 1w8a_A           86 GENKIKEISNKMFLGLHQLKTLNLYDNQ-ISCVMPGSFEHLNSLTSLNL  133 (192)
T ss_dssp             CSCCCCEECSSSSTTCTTCCEEECCSSC-CCEECTTSSTTCTTCCEEEC
T ss_pred             CCCcCCccCHHHhcCCCCCCEEECCCCc-CCeeCHHHhhcCCCCCEEEe
Confidence            99999977665 8899999999999999 66564445999999999975

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.57  E-value=6e-15  Score=136.27  Aligned_cols=146  Identities=18%  Similarity=0.332  Sum_probs=101.1

Q ss_pred             CCccEEEeecCCCcccCccc-cCCCccEEecccCccccccC-chhHHhcCCcccEEEeeCCcCCc-CCcccccCCCCcEE
Q 037969          152 KKCSAISLLNSSIHEVSEEF-ECLQLEFLHISQNTFVEVNI-PDNIFKGMKTLRVIDLTRMRLFS-LPSSIGLLANLQTL  228 (300)
Q Consensus       152 ~~l~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~l-~~~~~~~l~~L~~L~l~~~~~~~-lp~~i~~l~~L~~L  228 (300)
                      ++++.|++++|.+..++..+ .+++|+.|++.+|.+  ... |...+..+++|++|++++|.+.. .|..++.+++|++|
T Consensus       373 ~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l--~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  450 (570)
T 2z63_A          373 TSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNL--KQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVL  450 (570)
T ss_dssp             SCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEE--ESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEE
T ss_pred             CccCEEECCCCccccccccccccCCCCEEEccCCcc--ccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEE
Confidence            33444444444443333223 566666666666665  333 22334677778888888877776 46667778888888


Q ss_pred             EccCCCCC--C-cccccCCCCcCEEEccCCCCCCC-chhhcCCCCCCEEeccCCCCccccchhhhcCCCCCCeeeC
Q 037969          229 CLDQSMLG--D-IAIIGKLKNLEILSFLNSDIVRL-PGELGQLTKLRLLDLTDCLQLKFIVPNVLSSFTRLEELYM  300 (300)
Q Consensus       229 ~l~~~~l~--~-p~~~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l  300 (300)
                      ++++|.+.  . |..++.+++|++|++++|.++.+ |..++++++|++|++++|. +..+|+..+..+++|++|++
T Consensus       451 ~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l  525 (570)
T 2z63_A          451 KMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQ-LKSVPDGIFDRLTSLQKIWL  525 (570)
T ss_dssp             ECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEEC
T ss_pred             ECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCc-CCCCCHHHhhcccCCcEEEe
Confidence            88888875  2 67788888888888888888865 6678888888888888887 66666655788888888865

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.57  E-value=4.1e-14  Score=110.78  Aligned_cols=127  Identities=20%  Similarity=0.282  Sum_probs=104.6

Q ss_pred             ccEEEeecCCCcccCccccCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCcCCcc-cccCCCCcEEEccC
Q 037969          154 CSAISLLNSSIHEVSEEFECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPSS-IGLLANLQTLCLDQ  232 (300)
Q Consensus       154 l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~-i~~l~~L~~L~l~~  232 (300)
                      .+.+++.++.+..+|... .++|+.|++.+|.+  ..++...+..+++|++|++++|.++.+|.. ++.+++|++|++++
T Consensus         9 ~~~l~~~~~~l~~~p~~~-~~~l~~L~l~~n~l--~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   85 (177)
T 2o6r_A            9 GTEIRCNSKGLTSVPTGI-PSSATRLELESNKL--QSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE   85 (177)
T ss_dssp             TTEEECCSSCCSSCCTTC-CTTCSEEECCSSCC--CCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEecCCCCccCCCCC-CCCCcEEEeCCCcc--cEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence            356778888887777543 47899999999998  778877778899999999999999987654 68899999999999


Q ss_pred             CCCCC-c-ccccCCCCcCEEEccCCCCCCCchh-hcCCCCCCEEeccCCCCccc
Q 037969          233 SMLGD-I-AIIGKLKNLEILSFLNSDIVRLPGE-LGQLTKLRLLDLTDCLQLKF  283 (300)
Q Consensus       233 ~~l~~-p-~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~l~~  283 (300)
                      |.+.. | ..+..+++|++|++++|.++.+|.. +..+++|++|++++|+....
T Consensus        86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~  139 (177)
T 2o6r_A           86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS  139 (177)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred             CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeecc
Confidence            99888 4 4468899999999999999988876 47799999999999984433

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.56  E-value=7.3e-15  Score=133.28  Aligned_cols=139  Identities=22%  Similarity=0.240  Sum_probs=102.6

Q ss_pred             cCCccEEEeecCCCcccCccccCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCcC-CcccccCCCCcEEE
Q 037969          151 LKKCSAISLLNSSIHEVSEEFECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSL-PSSIGLLANLQTLC  229 (300)
Q Consensus       151 ~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~  229 (300)
                      +++++.|++++|.+..++.   .++|+.|++++|.+  ..++.   ..+++|++|++++|.++.+ |..++.+++|++|+
T Consensus        79 l~~L~~L~Ls~N~l~~l~~---~~~L~~L~L~~N~l--~~~~~---~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  150 (487)
T 3oja_A           79 LSTLRTLDLNNNYVQELLV---GPSIETLHAANNNI--SRVSC---SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLD  150 (487)
T ss_dssp             CTTCCEEECCSSEEEEEEE---CTTCCEEECCSSCC--CCEEE---CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEE
T ss_pred             CCCCCEEEecCCcCCCCCC---CCCcCEEECcCCcC--CCCCc---cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEE
Confidence            3444444444444433322   24455555555555  34433   3467889999999999886 66788999999999


Q ss_pred             ccCCCCCC--ccccc-CCCCcCEEEccCCCCCCCchhhcCCCCCCEEeccCCCCccccchhhhcCCCCCCeeeC
Q 037969          230 LDQSMLGD--IAIIG-KLKNLEILSFLNSDIVRLPGELGQLTKLRLLDLTDCLQLKFIVPNVLSSFTRLEELYM  300 (300)
Q Consensus       230 l~~~~l~~--p~~~~-~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l  300 (300)
                      +++|.+..  |..+. .+++|++|++++|.++.+|. ...+++|++|++++|. +..+|+. ++.+++|+.|++
T Consensus       151 Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L~Ls~N~-l~~~~~~-~~~l~~L~~L~L  221 (487)
T 3oja_A          151 LKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG-QVVFAKLKTLDLSSNK-LAFMGPE-FQSAAGVTWISL  221 (487)
T ss_dssp             CTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC-CCCCTTCCEEECCSSC-CCEECGG-GGGGTTCSEEEC
T ss_pred             CCCCCCCCcChHHHhhhCCcccEEecCCCccccccc-cccCCCCCEEECCCCC-CCCCCHh-HcCCCCccEEEe
Confidence            99999887  56665 78999999999999998865 4569999999999998 7888887 889999999875

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.56  E-value=5.2e-15  Score=140.31  Aligned_cols=106  Identities=27%  Similarity=0.372  Sum_probs=62.0

Q ss_pred             ccCCccEEEeecCCCcccCccc-cCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCcCCcccccCCCCcEE
Q 037969          150 ALKKCSAISLLNSSIHEVSEEF-ECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPSSIGLLANLQTL  228 (300)
Q Consensus       150 ~~~~l~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L  228 (300)
                      .+..++.|++++|.+..+|... .+++|++|++++|.+  ..+|..+ +.+++|++|+|++|.++.+|..++.+.+|++|
T Consensus       222 ~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l--~~lp~~~-~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L  298 (727)
T 4b8c_D          222 DDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSL--TELPAEI-KNLSNLRVLDLSHNRLTSLPAELGSCFQLKYF  298 (727)
T ss_dssp             CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCC--SCCCGGG-GGGTTCCEEECTTSCCSSCCSSGGGGTTCSEE
T ss_pred             cCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcC--cccChhh-hCCCCCCEEeCcCCcCCccChhhcCCCCCCEE
Confidence            3445556666666655555433 556666666666655  4555544 55666666666666666556556666666666


Q ss_pred             EccCCCCCC-cccccCCCCcCEEEccCCCCC
Q 037969          229 CLDQSMLGD-IAIIGKLKNLEILSFLNSDIV  258 (300)
Q Consensus       229 ~l~~~~l~~-p~~~~~l~~L~~L~l~~~~l~  258 (300)
                      +|++|.+.. |..++.+++|++|+|++|.++
T Consensus       299 ~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~  329 (727)
T 4b8c_D          299 YFFDNMVTTLPWEFGNLCNLQFLGVEGNPLE  329 (727)
T ss_dssp             ECCSSCCCCCCSSTTSCTTCCCEECTTSCCC
T ss_pred             ECCCCCCCccChhhhcCCCccEEeCCCCccC
Confidence            666665555 555666666666666666555

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.56  E-value=1.4e-14  Score=123.83  Aligned_cols=146  Identities=16%  Similarity=0.109  Sum_probs=118.0

Q ss_pred             cccCCccEEEeecCCCcc-cCc-----cccCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCc---CC--c
Q 037969          149 DALKKCSAISLLNSSIHE-VSE-----EFECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFS---LP--S  217 (300)
Q Consensus       149 ~~~~~l~~L~l~~~~~~~-~~~-----~~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~---lp--~  217 (300)
                      ..+++++.|++++|.+.. .+.     ...+++|++|++++|.+  ..++...+..+++|++|++++|++..   ++  .
T Consensus       114 ~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l--~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~  191 (310)
T 4glp_A          114 ATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHS--PAFSCEQVRAFPALTSLDLSDNPGLGERGLMAAL  191 (310)
T ss_dssp             CCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSS--CCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTS
T ss_pred             ccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCc--chhhHHHhccCCCCCEEECCCCCCccchhhhHHH
Confidence            457889999999999854 221     12689999999999999  77776666899999999999998764   32  3


Q ss_pred             ccccCCCCcEEEccCCCCCC-cc----cccCCCCcCEEEccCCCCCCC-chhhcCC---CCCCEEeccCCCCccccchhh
Q 037969          218 SIGLLANLQTLCLDQSMLGD-IA----IIGKLKNLEILSFLNSDIVRL-PGELGQL---TKLRLLDLTDCLQLKFIVPNV  288 (300)
Q Consensus       218 ~i~~l~~L~~L~l~~~~l~~-p~----~~~~l~~L~~L~l~~~~l~~l-p~~~~~l---~~L~~L~l~~~~~l~~lp~~~  288 (300)
                      .++.+++|++|++++|.++. +.    .++.+++|++|++++|.++.+ |..++.+   ++|++|++++|. ++.+|.. 
T Consensus       192 ~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~-l~~lp~~-  269 (310)
T 4glp_A          192 CPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAG-LEQVPKG-  269 (310)
T ss_dssp             CTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSC-CCSCCSC-
T ss_pred             hhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCC-CCchhhh-
Confidence            34789999999999999987 33    257889999999999999876 8777777   699999999999 7789886 


Q ss_pred             hcCCCCCCeeeC
Q 037969          289 LSSFTRLEELYM  300 (300)
Q Consensus       289 l~~L~~L~~L~l  300 (300)
                      +.  ++|++|++
T Consensus       270 ~~--~~L~~L~L  279 (310)
T 4glp_A          270 LP--AKLRVLDL  279 (310)
T ss_dssp             CC--SCCSCEEC
T ss_pred             hc--CCCCEEEC
Confidence            43  78888875

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.55  E-value=3.7e-14  Score=131.99  Aligned_cols=102  Identities=20%  Similarity=0.274  Sum_probs=42.9

Q ss_pred             hcCCcccEEEeeCCcCCcC---CcccccCCCCcEEEccCCCCCC--cccccCCCCcCEEEccCCCCCCC-ch-hhcCCCC
Q 037969          197 KGMKTLRVIDLTRMRLFSL---PSSIGLLANLQTLCLDQSMLGD--IAIIGKLKNLEILSFLNSDIVRL-PG-ELGQLTK  269 (300)
Q Consensus       197 ~~l~~L~~L~l~~~~~~~l---p~~i~~l~~L~~L~l~~~~l~~--p~~~~~l~~L~~L~l~~~~l~~l-p~-~~~~l~~  269 (300)
                      ..+++|++|++++|.++..   |..++.+++|++|++++|.+..  |..++.+++|++|++++|.++.. |. .+.++++
T Consensus       347 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~  426 (606)
T 3t6q_A          347 ENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHL  426 (606)
T ss_dssp             TTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTT
T ss_pred             hccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCccc
Confidence            4444444444444444432   3334444444444444444433  23344444444444444443322 11 1444444


Q ss_pred             CCEEeccCCCCccccchhhhcCCCCCCeee
Q 037969          270 LRLLDLTDCLQLKFIVPNVLSSFTRLEELY  299 (300)
Q Consensus       270 L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~  299 (300)
                      |++|++++|. +...++..++.+++|++|+
T Consensus       427 L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~  455 (606)
T 3t6q_A          427 LKVLNLSHSL-LDISSEQLFDGLPALQHLN  455 (606)
T ss_dssp             CCEEECTTCC-CBTTCTTTTTTCTTCCEEE
T ss_pred             CCEEECCCCc-cCCcCHHHHhCCCCCCEEE
Confidence            4444444444 2222222244444444443

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.55  E-value=1.1e-13  Score=124.44  Aligned_cols=151  Identities=12%  Similarity=0.069  Sum_probs=119.9

Q ss_pred             EEEeccccccCCCccccCCccEEEeecCCCcccCccccCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCc
Q 037969          135 FLVRNEVVWEWPDEDALKKCSAISLLNSSIHEVSEEFECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFS  214 (300)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~  214 (300)
                      ..+..+.+..++ ...+++++.|++++|.+..++ ...+++|++|++++|.+  ..+|   ++.+++|++|++++|.++.
T Consensus        69 L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N~l~~~~-~~~l~~L~~L~L~~N~l--~~l~---~~~l~~L~~L~l~~N~l~~  141 (457)
T 3bz5_A           69 LICTSNNITTLD-LSQNTNLTYLACDSNKLTNLD-VTPLTKLTYLNCDTNKL--TKLD---VSQNPLLTYLNCARNTLTE  141 (457)
T ss_dssp             EECCSSCCSCCC-CTTCTTCSEEECCSSCCSCCC-CTTCTTCCEEECCSSCC--SCCC---CTTCTTCCEEECTTSCCSC
T ss_pred             EEccCCcCCeEc-cccCCCCCEEECcCCCCceee-cCCCCcCCEEECCCCcC--Ceec---CCCCCcCCEEECCCCccce
Confidence            445555566554 466788999999999887765 44888999999999988  6665   4788999999999999888


Q ss_pred             CCcccccCCCCcEEEccCCCCCCcccccCCCCcCEEEccCCCCCCCchhhcCCCCCCEEeccCCCCccccchhhhcCCCC
Q 037969          215 LPSSIGLLANLQTLCLDQSMLGDIAIIGKLKNLEILSFLNSDIVRLPGELGQLTKLRLLDLTDCLQLKFIVPNVLSSFTR  294 (300)
Q Consensus       215 lp~~i~~l~~L~~L~l~~~~l~~p~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~l~~L~~  294 (300)
                      +|  ++.+++|++|++++|.....-.++.+++|++|++++|.++.+|  ++.+++|+.|++++|. +..++   ++.+++
T Consensus       142 l~--l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~l~--l~~l~~L~~L~l~~N~-l~~~~---l~~l~~  213 (457)
T 3bz5_A          142 ID--VSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITELD--VSQNKLLNRLNCDTNN-ITKLD---LNQNIQ  213 (457)
T ss_dssp             CC--CTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCCCC--CTTCTTCCEEECCSSC-CSCCC---CTTCTT
T ss_pred             ec--cccCCcCCEEECCCCCcccccccccCCcCCEEECCCCccceec--cccCCCCCEEECcCCc-CCeec---cccCCC
Confidence            75  7788899999999886444225778889999999999988887  7888999999999988 66663   678888


Q ss_pred             CCeeeC
Q 037969          295 LEELYM  300 (300)
Q Consensus       295 L~~L~l  300 (300)
                      |++|++
T Consensus       214 L~~L~L  219 (457)
T 3bz5_A          214 LTFLDC  219 (457)
T ss_dssp             CSEEEC
T ss_pred             CCEEEC
Confidence            888875

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.54  E-value=5.7e-16  Score=123.74  Aligned_cols=142  Identities=22%  Similarity=0.283  Sum_probs=108.5

Q ss_pred             ccEEEeecC--CCcccCccc-cCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCcCCcccccCCCCcEEEc
Q 037969          154 CSAISLLNS--SIHEVSEEF-ECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPSSIGLLANLQTLCL  230 (300)
Q Consensus       154 l~~L~l~~~--~~~~~~~~~-~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l  230 (300)
                      ++...+.+.  .++.+|..+ .+++|++|++++|.+  ..+| . +..+++|++|++++|.++.+|..++.+++|++|++
T Consensus        25 l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l--~~l~-~-~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L  100 (198)
T 1ds9_A           25 AEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNI--EKIS-S-LSGMENLRILSLGRNLIKKIENLDAVADTLEELWI  100 (198)
T ss_dssp             CSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEE--SCCC-C-HHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEE
T ss_pred             hheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCC--cccc-c-cccCCCCCEEECCCCCcccccchhhcCCcCCEEEC
Confidence            445555443  345555544 788999999998888  6777 4 47888999999999988888888888888999999


Q ss_pred             cCCCCCCcccccCCCCcCEEEccCCCCCCCch--hhcCCCCCCEEeccCCCCccccc---------hhhhcCCCCCCeee
Q 037969          231 DQSMLGDIAIIGKLKNLEILSFLNSDIVRLPG--ELGQLTKLRLLDLTDCLQLKFIV---------PNVLSSFTRLEELY  299 (300)
Q Consensus       231 ~~~~l~~p~~~~~l~~L~~L~l~~~~l~~lp~--~~~~l~~L~~L~l~~~~~l~~lp---------~~~l~~L~~L~~L~  299 (300)
                      ++|.+..++.++.+++|++|++++|.++.+|.  .+..+++|++|++++|......|         ...+..+++|+.|+
T Consensus       101 ~~N~l~~l~~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld  180 (198)
T 1ds9_A          101 SYNQIASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             EEEECCCHHHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred             cCCcCCcCCccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence            99988884468888899999999998887765  68888999999999887322222         22367788888775

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.53  E-value=4.7e-14  Score=130.28  Aligned_cols=136  Identities=21%  Similarity=0.255  Sum_probs=71.4

Q ss_pred             EeccccccCCCccccCCccEEEeecCCCcccCc-cc-cCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCc
Q 037969          137 VRNEVVWEWPDEDALKKCSAISLLNSSIHEVSE-EF-ECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFS  214 (300)
Q Consensus       137 ~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~-~~-~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~  214 (300)
                      ..+..+..+|.. ..++++.|++++|.+..++. .+ .+++|++|++++|.+  ..+++..|.++++|++|++++|.++.
T Consensus        38 ls~~~L~~ip~~-~~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l--~~~~~~~~~~l~~L~~L~Ls~N~l~~  114 (562)
T 3a79_B           38 YSNRNLTHVPKD-LPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRI--RSLDFHVFLFNQDLEYLDVSHNRLQN  114 (562)
T ss_dssp             CTTSCCCSCCTT-SCTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCC--CEECTTTTTTCTTCCEEECTTSCCCE
T ss_pred             cCCCCCccCCCC-CCCCcCEEECCCCCccccChhhhccCCCccEEECCCCCC--CcCCHHHhCCCCCCCEEECCCCcCCc
Confidence            334444444432 23555566666665544442 22 555666666666555  44433334555666666666666555


Q ss_pred             CCcccccCCCCcEEEccCCCCCC---cccccCCCCcCEEEccCCCCCCCchhhcCCCCC--CEEeccCCC
Q 037969          215 LPSSIGLLANLQTLCLDQSMLGD---IAIIGKLKNLEILSFLNSDIVRLPGELGQLTKL--RLLDLTDCL  279 (300)
Q Consensus       215 lp~~i~~l~~L~~L~l~~~~l~~---p~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L--~~L~l~~~~  279 (300)
                      +|..  .+++|++|++++|.+..   |..++.+++|++|++++|.++..  .+..+++|  ++|++++|.
T Consensus       115 lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~--~~~~l~~L~L~~L~L~~n~  180 (562)
T 3a79_B          115 ISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL--DLLPVAHLHLSCILLDLVS  180 (562)
T ss_dssp             ECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT--TTGGGTTSCEEEEEEEESS
T ss_pred             cCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC--chhhhhhceeeEEEeeccc
Confidence            5544  55556666666665544   24555566666666666555431  23333444  566665555

>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*

Probab=99.53  E-value=1e-15  Score=140.83  Aligned_cols=94  Identities=11%  Similarity=0.045  Sum_probs=73.7

Q ss_pred             cccccceeeccccCCchhHHHHHH-----------HhhhcCCCCCHHHHHhhhhhc--ccccCch---hHHHHHHHHHHH
Q 037969           32 AETYSSIELSFKYLKGEQLKKIFL-----------LCSLIGNSFWFTDLFKYSMGL--GIFQGVN---RMVDARNKLYAL   95 (300)
Q Consensus        32 ~~i~~~l~lsy~~L~~~~lk~cfl-----------~~a~fp~~~~~~~Li~~w~ae--g~i~~~~---~~e~~~~~~~~~   95 (300)
                      ..+.+++++||++||.+ +|.||+           |||+||+++.++  +++|+|+  ||+....   ..+++.   . +
T Consensus       361 ~~i~~~l~~Sy~~L~~~-lk~~f~~Ls~~er~l~~~ls~fp~~~~i~--i~~w~a~~~G~i~~~~~~~~~~~~~---~-~  433 (549)
T 2a5y_B          361 VGVECITPYSYKSLAMA-LQRCVEVLSDEDRSALAFAVVMPPGVDIP--VKLWSCVIPVDICSNEEEQLDDEVA---D-R  433 (549)
T ss_dssp             STTCCCSSSSSSSHHHH-HHHHHHTSCHHHHHHTTGGGSSCTTCCEE--HHHHHHHSCC-------CCCTHHHH---H-H
T ss_pred             HHHHHHHhcccccccHH-HHHHHhccchhhhhHhhheeeeCCCCeee--eeeeeeeccceeccCCCCCCHHHHH---H-H
Confidence            34999999999999999 999999           999999999999  8899999  9997532   233333   2 6


Q ss_pred             HHHHHHhcccccCC--CCCcEEechhHHHHHHHHhhcCC
Q 037969           96 VHELRDSCLLLEGD--SSEQFSMHDVVYDVVVSIACRDQ  132 (300)
Q Consensus        96 ~~~L~~~~~~~~~~--~~~~~~~hdl~~~~~~~~~~~~~  132 (300)
                      +++|+++++++...  ...+|+|||++++++..++.+++
T Consensus       434 l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~  472 (549)
T 2a5y_B          434 LKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQT  472 (549)
T ss_dssp             HHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHH
T ss_pred             HHHHHHcCCeeEecCCCceEEEeChHHHHHHHHHHHHHH
Confidence            88889999998653  34579999999999998876543

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.52  E-value=5.2e-14  Score=135.98  Aligned_cols=142  Identities=16%  Similarity=0.133  Sum_probs=120.0

Q ss_pred             cEEEeecCCCcccCccccCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCC-cC-CcccccCCCCcEEEccC
Q 037969          155 SAISLLNSSIHEVSEEFECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLF-SL-PSSIGLLANLQTLCLDQ  232 (300)
Q Consensus       155 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~-~l-p~~i~~l~~L~~L~l~~  232 (300)
                      +..+.+++.+..+|.  -.++++.|++++|.+  ..+++..|.++++|++|++++|... .+ |..++++++|++|++++
T Consensus         7 ~~~dcs~~~L~~vP~--lp~~l~~LdLs~N~i--~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~   82 (844)
T 3j0a_A            7 RIAFYRFCNLTQVPQ--VLNTTERLLLSFNYI--RTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGS   82 (844)
T ss_dssp             EEEEESCCCSSCCCS--SCTTCCEEEEESCCC--CEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTT
T ss_pred             eEEEccCCCCCCCCC--CCCCcCEEECCCCcC--CccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCC
Confidence            467778888889998  568999999999999  6665555699999999999999544 45 78899999999999999


Q ss_pred             CCCCC--cccccCCCCcCEEEccCCCCCC-Cchh--hcCCCCCCEEeccCCCCccccchhhhcCCCCCCeeeC
Q 037969          233 SMLGD--IAIIGKLKNLEILSFLNSDIVR-LPGE--LGQLTKLRLLDLTDCLQLKFIVPNVLSSFTRLEELYM  300 (300)
Q Consensus       233 ~~l~~--p~~~~~l~~L~~L~l~~~~l~~-lp~~--~~~l~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l  300 (300)
                      |.+..  |..++.+++|++|++++|.++. +|..  ++++++|++|++++|...+..|...++++++|++|++
T Consensus        83 N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~L  155 (844)
T 3j0a_A           83 SKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDF  155 (844)
T ss_dssp             CCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEE
T ss_pred             CcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEEC
Confidence            99987  7889999999999999999884 5665  8999999999999999434334334899999999974

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.51  E-value=3.6e-13  Score=125.13  Aligned_cols=71  Identities=15%  Similarity=0.141  Sum_probs=54.5

Q ss_pred             CCCcEEEccCCCCCCcccccCCCCcCEEEccCCCCCCCchhhcCCCCCCEEeccCCCCccccchhhhcCCCCCCeeeC
Q 037969          223 ANLQTLCLDQSMLGDIAIIGKLKNLEILSFLNSDIVRLPGELGQLTKLRLLDLTDCLQLKFIVPNVLSSFTRLEELYM  300 (300)
Q Consensus       223 ~~L~~L~l~~~~l~~p~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l  300 (300)
                      ++|++|++++|.+...+  ..+++|++|++++|.++.+|.   .+++|+.|++++|. +..+|.. ++++++|+.|+|
T Consensus       221 ~~L~~L~Ls~N~L~~lp--~~l~~L~~L~Ls~N~L~~lp~---~~~~L~~L~Ls~N~-L~~lp~~-l~~l~~L~~L~L  291 (622)
T 3g06_A          221 SGLKELIVSGNRLTSLP--VLPSELKELMVSGNRLTSLPM---LPSGLLSLSVYRNQ-LTRLPES-LIHLSSETTVNL  291 (622)
T ss_dssp             TTCCEEECCSSCCSCCC--CCCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSC-CCSCCGG-GGGSCTTCEEEC
T ss_pred             CCCCEEEccCCccCcCC--CCCCcCcEEECCCCCCCcCCc---ccccCcEEeCCCCC-CCcCCHH-HhhccccCEEEe
Confidence            55777777777766622  455778888888888888876   56788999999987 7788876 889999998875

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.51  E-value=7.5e-14  Score=121.32  Aligned_cols=160  Identities=21%  Similarity=0.200  Sum_probs=74.7

Q ss_pred             eccccccCCCccccCCccEEEeecCCCcccCcc-c-cCCCccEEecccCccccccCchhHHhcCCcccE-EEeeCCcCCc
Q 037969          138 RNEVVWEWPDEDALKKCSAISLLNSSIHEVSEE-F-ECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRV-IDLTRMRLFS  214 (300)
Q Consensus       138 ~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~-~-~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~-L~l~~~~~~~  214 (300)
                      .+..+..+|. ...++++.|++++|.++.+|.. + ++++|+.|++++|.+. ..+|...|.++++++. +.+.+|+++.
T Consensus        17 ~~~~Lt~iP~-~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~-~~i~~~~f~~L~~l~~~l~~~~N~l~~   94 (350)
T 4ay9_X           17 QESKVTEIPS-DLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVL-EVIEADVFSNLPKLHEIRIEKANNLLY   94 (350)
T ss_dssp             ESTTCCSCCT-TCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTC-CEECTTSBCSCTTCCEEEEEEETTCCE
T ss_pred             cCCCCCccCc-CcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCC-CccChhHhhcchhhhhhhcccCCcccc
Confidence            3344455553 2234566666666666655542 2 5666666666666541 2334333344444332 3333444444


Q ss_pred             C-CcccccCCCCcEEEccCCCCCC-c--------------------------ccccCC-CCcCEEEccCCCCCCCchhhc
Q 037969          215 L-PSSIGLLANLQTLCLDQSMLGD-I--------------------------AIIGKL-KNLEILSFLNSDIVRLPGELG  265 (300)
Q Consensus       215 l-p~~i~~l~~L~~L~l~~~~l~~-p--------------------------~~~~~l-~~L~~L~l~~~~l~~lp~~~~  265 (300)
                      + |..+..+++|++|++++|.+.. |                          ..+..+ ..+++|++++|.++.+|..+.
T Consensus        95 l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f  174 (350)
T 4ay9_X           95 INPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAF  174 (350)
T ss_dssp             ECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSS
T ss_pred             cCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhc
Confidence            3 2334444444444444443222 1                          111112 234555555555555555444


Q ss_pred             CCCCCCEEeccCCCCccccchhhhcCCCCCCeee
Q 037969          266 QLTKLRLLDLTDCLQLKFIVPNVLSSFTRLEELY  299 (300)
Q Consensus       266 ~l~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~  299 (300)
                      ...+|+.|++.++..++.+|.+.++.+++|++|+
T Consensus       175 ~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~Ld  208 (350)
T 4ay9_X          175 NGTQLDELNLSDNNNLEELPNDVFHGASGPVILD  208 (350)
T ss_dssp             TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEE
T ss_pred             cccchhHHhhccCCcccCCCHHHhccCcccchhh
Confidence            4455555555544445555544445555555554

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.50  E-value=3.1e-13  Score=105.77  Aligned_cols=119  Identities=24%  Similarity=0.395  Sum_probs=104.0

Q ss_pred             ccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCcCCc-ccccCCCCcEEEccCCCCCC-c-ccccCCCCcCEEEc
Q 037969          176 LEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPS-SIGLLANLQTLCLDQSMLGD-I-AIIGKLKNLEILSF  252 (300)
Q Consensus       176 L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~~l~~-p-~~~~~l~~L~~L~l  252 (300)
                      .+.+++.++.+  ..+|..+   .++|++|++++|.++.+|. .++.+++|++|++++|.+.. + ..++.+++|++|++
T Consensus         9 ~~~l~~~~~~l--~~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l   83 (177)
T 2o6r_A            9 GTEIRCNSKGL--TSVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYL   83 (177)
T ss_dssp             TTEEECCSSCC--SSCCTTC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCEEEecCCCC--ccCCCCC---CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEEC
Confidence            46788888888  8888754   4799999999999999765 46899999999999999988 4 45789999999999


Q ss_pred             cCCCCCCCchh-hcCCCCCCEEeccCCCCccccchhhhcCCCCCCeeeC
Q 037969          253 LNSDIVRLPGE-LGQLTKLRLLDLTDCLQLKFIVPNVLSSFTRLEELYM  300 (300)
Q Consensus       253 ~~~~l~~lp~~-~~~l~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l  300 (300)
                      ++|.++.+|.. ++.+++|++|++++|. +..+|...+..+++|++|++
T Consensus        84 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l  131 (177)
T 2o6r_A           84 HENKLQSLPNGVFDKLTQLKELALDTNQ-LKSVPDGIFDRLTSLQKIWL  131 (177)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEEC
T ss_pred             CCCCccccCHHHhhCCcccCEEECcCCc-ceEeCHHHhcCCcccCEEEe
Confidence            99999988876 6899999999999998 78888876788999999875

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.49  E-value=5e-13  Score=120.09  Aligned_cols=122  Identities=22%  Similarity=0.263  Sum_probs=57.4

Q ss_pred             CccEEEeecCCCcccCccccCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCcCCcccccCCCCcEEEccC
Q 037969          153 KCSAISLLNSSIHEVSEEFECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPSSIGLLANLQTLCLDQ  232 (300)
Q Consensus       153 ~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~  232 (300)
                      +++.|++++|.+..+|....+++|+.|++++|.+  ..+|..    ..+|++|++++|.++.+| .++.+++|++|++++
T Consensus       132 ~L~~L~L~~n~l~~lp~~~~l~~L~~L~l~~N~l--~~lp~~----~~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~  204 (454)
T 1jl5_A          132 LLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSL--KKLPDL----PPSLEFIAAGNNQLEELP-ELQNLPFLTAIYADN  204 (454)
T ss_dssp             TCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCC--SCCCCC----CTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCS
T ss_pred             CCCEEECcCCCCCCCcccCCCCCCCEEECCCCcC--cccCCC----cccccEEECcCCcCCcCc-cccCCCCCCEEECCC
Confidence            4444444444444444322444444444444444  333331    124444444444444444 344555555555555


Q ss_pred             CCCCC-cccccCCCCcCEEEccCCCCCCCchhhcCCCCCCEEeccCCCCccccch
Q 037969          233 SMLGD-IAIIGKLKNLEILSFLNSDIVRLPGELGQLTKLRLLDLTDCLQLKFIVP  286 (300)
Q Consensus       233 ~~l~~-p~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~  286 (300)
                      |.+.. |..   .++|++|++++|.++.+| .++.+++|++|++++|. +..+|.
T Consensus       205 N~l~~l~~~---~~~L~~L~l~~n~l~~lp-~~~~l~~L~~L~l~~N~-l~~l~~  254 (454)
T 1jl5_A          205 NSLKKLPDL---PLSLESIVAGNNILEELP-ELQNLPFLTTIYADNNL-LKTLPD  254 (454)
T ss_dssp             SCCSSCCCC---CTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSC-CSSCCS
T ss_pred             CcCCcCCCC---cCcccEEECcCCcCCccc-ccCCCCCCCEEECCCCc-CCcccc
Confidence            55444 221   134555555555555555 25555555666665555 444443

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.49  E-value=1.6e-13  Score=126.10  Aligned_cols=142  Identities=18%  Similarity=0.205  Sum_probs=118.6

Q ss_pred             EEEeccccccCCCccccCCccEEEeecCCCcccCccccCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCc
Q 037969          135 FLVRNEVVWEWPDEDALKKCSAISLLNSSIHEVSEEFECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFS  214 (300)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~  214 (300)
                      ..+.++.+..+|.  ...+++.|++++|.+..+|.  .+++|+.|++++|.+  ..+|.    .+++|++|++++|.++.
T Consensus       105 L~Ls~N~l~~ip~--l~~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~l--~~lp~----~l~~L~~L~Ls~N~L~~  174 (571)
T 3cvr_A          105 LDACDNRLSTLPE--LPASLKHLDVDNNQLTMLPE--LPALLEYINADNNQL--TMLPE----LPTSLEVLSVRNNQLTF  174 (571)
T ss_dssp             EECCSSCCSCCCC--CCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCC--SCCCC----CCTTCCEEECCSSCCSC
T ss_pred             EEccCCCCCCcch--hhcCCCEEECCCCcCCCCCC--cCccccEEeCCCCcc--CcCCC----cCCCcCEEECCCCCCCC
Confidence            4455566666666  33389999999999988888  789999999999999  77886    57899999999999999


Q ss_pred             CCcccccCCCCcEEEccCCCCCC-cccccCCCCc-------CEEEccCCCCCCCchhhcCCCCCCEEeccCCCCccccch
Q 037969          215 LPSSIGLLANLQTLCLDQSMLGD-IAIIGKLKNL-------EILSFLNSDIVRLPGELGQLTKLRLLDLTDCLQLKFIVP  286 (300)
Q Consensus       215 lp~~i~~l~~L~~L~l~~~~l~~-p~~~~~l~~L-------~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~  286 (300)
                      +|. ++  ++|++|++++|.++. |. +..  +|       +.|++++|.++.+|..+.++++|+.|++++|...+.+|.
T Consensus       175 lp~-l~--~~L~~L~Ls~N~L~~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p~  248 (571)
T 3cvr_A          175 LPE-LP--ESLEALDVSTNLLESLPA-VPV--RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRE  248 (571)
T ss_dssp             CCC-CC--TTCCEEECCSSCCSSCCC-CC----------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCHHHHH
T ss_pred             cch-hh--CCCCEEECcCCCCCchhh-HHH--hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCCcCHH
Confidence            988 66  899999999999988 66 554  77       999999999999999999999999999999996666665


Q ss_pred             hhhcCCC
Q 037969          287 NVLSSFT  293 (300)
Q Consensus       287 ~~l~~L~  293 (300)
                      . ++.++
T Consensus       249 ~-l~~l~  254 (571)
T 3cvr_A          249 S-LSQQT  254 (571)
T ss_dssp             H-HHHHH
T ss_pred             H-HHHhh
Confidence            4 55543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.48  E-value=1.8e-13  Score=126.10  Aligned_cols=119  Identities=17%  Similarity=0.234  Sum_probs=107.4

Q ss_pred             CccEEEeecCCCcccCccccCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCcCCcccccCCCCcEEEccC
Q 037969          153 KCSAISLLNSSIHEVSEEFECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPSSIGLLANLQTLCLDQ  232 (300)
Q Consensus       153 ~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~  232 (300)
                      .++.|++++|.+..+|....+++|+.|++++|.+  ..+|..+ +.+++|++|++++|.++.+| .++.+++|++|++++
T Consensus       442 ~L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~l--~~lp~~~-~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~  517 (567)
T 1dce_A          442 DVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRL--RALPPAL-AALRCLEVLQASDNALENVD-GVANLPRLQELLLCN  517 (567)
T ss_dssp             TCSEEECTTSCCSSCCCGGGGTTCCEEECCSSCC--CCCCGGG-GGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCS
T ss_pred             CceEEEecCCCCCCCcCccccccCcEeecCcccc--cccchhh-hcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCC
Confidence            5889999999998899856999999999999999  7999876 89999999999999999998 899999999999999


Q ss_pred             CCCCC---cccccCCCCcCEEEccCCCCCCCchhh----cCCCCCCEEec
Q 037969          233 SMLGD---IAIIGKLKNLEILSFLNSDIVRLPGEL----GQLTKLRLLDL  275 (300)
Q Consensus       233 ~~l~~---p~~~~~l~~L~~L~l~~~~l~~lp~~~----~~l~~L~~L~l  275 (300)
                      |.+..   |..++.+++|++|++++|.++.+|+.+    ..+++|+.|++
T Consensus       518 N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          518 NRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             SCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             CCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence            99886   578999999999999999999887653    34889998864

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.46  E-value=4.8e-14  Score=121.61  Aligned_cols=149  Identities=17%  Similarity=0.207  Sum_probs=88.2

Q ss_pred             ccCCccEEEeecCCCc-ccCccc-cCCCccEEecccC-ccccc-cCchhHHhcCCcccEEEeeCC-cCCc--CCcccccC
Q 037969          150 ALKKCSAISLLNSSIH-EVSEEF-ECLQLEFLHISQN-TFVEV-NIPDNIFKGMKTLRVIDLTRM-RLFS--LPSSIGLL  222 (300)
Q Consensus       150 ~~~~l~~L~l~~~~~~-~~~~~~-~~~~L~~L~l~~~-~~~~~-~l~~~~~~~l~~L~~L~l~~~-~~~~--lp~~i~~l  222 (300)
                      .+++++.|++.+|.+. ..+..+ .+++|++|++.+| .+ .. .++. ++..+++|++|++++| .++.  +|..++.+
T Consensus       116 ~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l-~~~~l~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l  193 (336)
T 2ast_B          116 QCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGF-SEFALQT-LLSSCSRLDELNLSWCFDFTEKHVQVAVAHV  193 (336)
T ss_dssp             TBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSC-CHHHHHH-HHHHCTTCCEEECCCCTTCCHHHHHHHHHHS
T ss_pred             hCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCC-CHHHHHH-HHhcCCCCCEEcCCCCCCcChHHHHHHHHhc
Confidence            3455666666666552 233222 5666677776666 33 11 2333 2356677777777777 6664  45556667


Q ss_pred             C-CCcEEEccCC--CCCC---cccccCCCCcCEEEccCCC-CC-CCchhhcCCCCCCEEeccCCCCccccchhhhcCCCC
Q 037969          223 A-NLQTLCLDQS--MLGD---IAIIGKLKNLEILSFLNSD-IV-RLPGELGQLTKLRLLDLTDCLQLKFIVPNVLSSFTR  294 (300)
Q Consensus       223 ~-~L~~L~l~~~--~l~~---p~~~~~l~~L~~L~l~~~~-l~-~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~l~~L~~  294 (300)
                      + +|++|++++|  .+..   +..+..+++|++|++++|. ++ ..+..++++++|++|++++|..+.......++++++
T Consensus       194 ~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~  273 (336)
T 2ast_B          194 SETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPT  273 (336)
T ss_dssp             CTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTT
T ss_pred             ccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCC
Confidence            7 7777777777  3432   4555667777777777776 44 455567777777777777775222111112666777


Q ss_pred             CCeeeC
Q 037969          295 LEELYM  300 (300)
Q Consensus       295 L~~L~l  300 (300)
                      |++|++
T Consensus       274 L~~L~l  279 (336)
T 2ast_B          274 LKTLQV  279 (336)
T ss_dssp             CCEEEC
T ss_pred             CCEEec
Confidence            777764

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.46  E-value=1.6e-12  Score=116.90  Aligned_cols=149  Identities=19%  Similarity=0.297  Sum_probs=106.7

Q ss_pred             EEEeccccccCCCccccCCccEEEeecCCCcccCccccCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCc
Q 037969          135 FLVRNEVVWEWPDEDALKKCSAISLLNSSIHEVSEEFECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFS  214 (300)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~  214 (300)
                      ..+..+.+..+|.  ..++++.|++++|.+..++...  ++|++|++++|.+  ..+|.  ++.+++|++|++++|.++.
T Consensus        96 L~l~~n~l~~lp~--~~~~L~~L~l~~n~l~~l~~~~--~~L~~L~L~~n~l--~~lp~--~~~l~~L~~L~l~~N~l~~  167 (454)
T 1jl5_A           96 LVASCNSLTELPE--LPQSLKSLLVDNNNLKALSDLP--PLLEYLGVSNNQL--EKLPE--LQNSSFLKIIDVDNNSLKK  167 (454)
T ss_dssp             EECCSSCCSSCCC--CCTTCCEEECCSSCCSCCCSCC--TTCCEEECCSSCC--SSCCC--CTTCTTCCEEECCSSCCSC
T ss_pred             EEccCCcCCcccc--ccCCCcEEECCCCccCcccCCC--CCCCEEECcCCCC--CCCcc--cCCCCCCCEEECCCCcCcc
Confidence            3344444555553  3467788888888776665432  6788888888887  66774  4778888888888888887


Q ss_pred             CCcccccCCCCcEEEccCCCCCCcccccCCCCcCEEEccCCCCCCCchhhcCCCCCCEEeccCCCCccccchhhhcCCCC
Q 037969          215 LPSSIGLLANLQTLCLDQSMLGDIAIIGKLKNLEILSFLNSDIVRLPGELGQLTKLRLLDLTDCLQLKFIVPNVLSSFTR  294 (300)
Q Consensus       215 lp~~i~~l~~L~~L~l~~~~l~~p~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~l~~L~~  294 (300)
                      +|..+   .+|++|++++|.+...+.++.+++|++|++++|.++.+|...   ++|++|++++|. +..+|.  ++.+++
T Consensus       168 lp~~~---~~L~~L~L~~n~l~~l~~~~~l~~L~~L~l~~N~l~~l~~~~---~~L~~L~l~~n~-l~~lp~--~~~l~~  238 (454)
T 1jl5_A          168 LPDLP---PSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLP---LSLESIVAGNNI-LEELPE--LQNLPF  238 (454)
T ss_dssp             CCCCC---TTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCCCC---TTCCEEECCSSC-CSSCCC--CTTCTT
T ss_pred             cCCCc---ccccEEECcCCcCCcCccccCCCCCCEEECCCCcCCcCCCCc---CcccEEECcCCc-CCcccc--cCCCCC
Confidence            77643   478888888888777336788888888888888887776533   578888888887 667774  778888


Q ss_pred             CCeeeC
Q 037969          295 LEELYM  300 (300)
Q Consensus       295 L~~L~l  300 (300)
                      |++|++
T Consensus       239 L~~L~l  244 (454)
T 1jl5_A          239 LTTIYA  244 (454)
T ss_dssp             CCEEEC
T ss_pred             CCEEEC
Confidence            887764

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.46  E-value=1.4e-12  Score=121.21  Aligned_cols=90  Identities=17%  Similarity=0.166  Sum_probs=60.6

Q ss_pred             EEEeccccccCCCccccCCccEEEeecCCCcccCccccCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCc
Q 037969          135 FLVRNEVVWEWPDEDALKKCSAISLLNSSIHEVSEEFECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFS  214 (300)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~  214 (300)
                      ..+.++.+..+|.  .+++++.|++++|.+..+|.  .+++|+.|++++|.+  ..+|.    .+++|+.|++++|.++.
T Consensus        66 L~L~~N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~l--~~l~~----~l~~L~~L~L~~N~l~~  135 (622)
T 3g06_A           66 LVIPDNNLTSLPA--LPPELRTLEVSGNQLTSLPV--LPPGLLELSIFSNPL--THLPA----LPSGLCKLWIFGNQLTS  135 (622)
T ss_dssp             EEECSCCCSCCCC--CCTTCCEEEECSCCCSCCCC--CCTTCCEEEECSCCC--CCCCC----CCTTCCEEECCSSCCSC
T ss_pred             EEecCCCCCCCCC--cCCCCCEEEcCCCcCCcCCC--CCCCCCEEECcCCcC--CCCCC----CCCCcCEEECCCCCCCc
Confidence            4455555555554  46677777777777766666  667777777777777  66665    35667777777777777


Q ss_pred             CCcccccCCCCcEEEccCCCCCC
Q 037969          215 LPSSIGLLANLQTLCLDQSMLGD  237 (300)
Q Consensus       215 lp~~i~~l~~L~~L~l~~~~l~~  237 (300)
                      +|..   +++|++|++++|.+..
T Consensus       136 lp~~---l~~L~~L~Ls~N~l~~  155 (622)
T 3g06_A          136 LPVL---PPGLQELSVSDNQLAS  155 (622)
T ss_dssp             CCCC---CTTCCEEECCSSCCSC
T ss_pred             CCCC---CCCCCEEECcCCcCCC
Confidence            7654   3677777887777665

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.44  E-value=1.3e-13  Score=118.90  Aligned_cols=149  Identities=16%  Similarity=0.207  Sum_probs=89.3

Q ss_pred             cccCCccEEEeecCCCcc--cCccc-cCCCccEEecccCccccccCchhHHhcCCcccEEEeeCC-cCCc--CCcccccC
Q 037969          149 DALKKCSAISLLNSSIHE--VSEEF-ECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRM-RLFS--LPSSIGLL  222 (300)
Q Consensus       149 ~~~~~l~~L~l~~~~~~~--~~~~~-~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~-~~~~--lp~~i~~l  222 (300)
                      ..+++++.|++++|.+..  ++... .+++|+.|++.+|.+ ....+..+ ..+++|++|++++| .++.  +|..+..+
T Consensus        90 ~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l-~~~~~~~l-~~~~~L~~L~L~~~~~l~~~~l~~~~~~~  167 (336)
T 2ast_B           90 FSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRL-SDPIVNTL-AKNSNLVRLNLSGCSGFSEFALQTLLSSC  167 (336)
T ss_dssp             CCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBC-CHHHHHHH-TTCTTCSEEECTTCBSCCHHHHHHHHHHC
T ss_pred             ccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCccc-CHHHHHHH-hcCCCCCEEECCCCCCCCHHHHHHHHhcC
Confidence            345666777777666532  44433 666777777776665 12334333 55677777777776 4553  45556666


Q ss_pred             CCCcEEEccCC-CCCC---cccccCCC-CcCEEEccCC--CCC--CCchhhcCCCCCCEEeccCCCCc-cccchhhhcCC
Q 037969          223 ANLQTLCLDQS-MLGD---IAIIGKLK-NLEILSFLNS--DIV--RLPGELGQLTKLRLLDLTDCLQL-KFIVPNVLSSF  292 (300)
Q Consensus       223 ~~L~~L~l~~~-~l~~---p~~~~~l~-~L~~L~l~~~--~l~--~lp~~~~~l~~L~~L~l~~~~~l-~~lp~~~l~~L  292 (300)
                      ++|++|++++| .+..   +..+..++ +|++|++++|  .++  .+|..+.++++|++|++++|..+ ...+.. ++.+
T Consensus       168 ~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~-l~~l  246 (336)
T 2ast_B          168 SRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQE-FFQL  246 (336)
T ss_dssp             TTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGG-GGGC
T ss_pred             CCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHH-HhCC
Confidence            77777777776 5653   34456666 7777777776  332  45555666677777777776632 233443 6666


Q ss_pred             CCCCeeeC
Q 037969          293 TRLEELYM  300 (300)
Q Consensus       293 ~~L~~L~l  300 (300)
                      ++|++|++
T Consensus       247 ~~L~~L~l  254 (336)
T 2ast_B          247 NYLQHLSL  254 (336)
T ss_dssp             TTCCEEEC
T ss_pred             CCCCEeeC
Confidence            77776654

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.42  E-value=7.5e-13  Score=103.29  Aligned_cols=105  Identities=16%  Similarity=0.233  Sum_probs=66.3

Q ss_pred             cEEEeecCCCcccCccccCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCcCCcc-cccCCCCcEEEccCC
Q 037969          155 SAISLLNSSIHEVSEEFECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPSS-IGLLANLQTLCLDQS  233 (300)
Q Consensus       155 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~-i~~l~~L~~L~l~~~  233 (300)
                      +.++++++.+..+|..+. ++|+.|++++|.+  ..+++..|..+++|++|+|++|.++.+|.. ++.+++|++|++++|
T Consensus        15 ~~l~~~~n~l~~iP~~~~-~~L~~L~Ls~N~l--~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N   91 (174)
T 2r9u_A           15 TLVNCQNIRLASVPAGIP-TDKQRLWLNNNQI--TKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN   91 (174)
T ss_dssp             SEEECCSSCCSSCCSCCC-TTCSEEECCSSCC--CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             cEEEeCCCCCCccCCCcC-CCCcEEEeCCCCc--cccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence            456666666666665443 6666777776666  555544456666777777777766666544 456666777777666


Q ss_pred             CCCC-cc-cccCCCCcCEEEccCCCCCCCch
Q 037969          234 MLGD-IA-IIGKLKNLEILSFLNSDIVRLPG  262 (300)
Q Consensus       234 ~l~~-p~-~~~~l~~L~~L~l~~~~l~~lp~  262 (300)
                      .+.. |+ .+..+++|++|++++|.+...|.
T Consensus        92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~  122 (174)
T 2r9u_A           92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCECR  122 (174)
T ss_dssp             CCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred             ccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence            6666 43 36666667777776666665544

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.39  E-value=1.6e-12  Score=101.38  Aligned_cols=105  Identities=18%  Similarity=0.242  Sum_probs=87.4

Q ss_pred             ccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCcC-CcccccCCCCcEEEccCCCCCC-ccc-ccCCCCcCEEEc
Q 037969          176 LEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSL-PSSIGLLANLQTLCLDQSMLGD-IAI-IGKLKNLEILSF  252 (300)
Q Consensus       176 L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~~~l~~-p~~-~~~l~~L~~L~l  252 (300)
                      -+.++++++.+  ..+|..+   ..+|++|++++|.++.+ |..++.+++|++|++++|.+.. |+. +..+++|++|++
T Consensus        14 ~~~l~~~~n~l--~~iP~~~---~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L   88 (174)
T 2r9u_A           14 QTLVNCQNIRL--ASVPAGI---PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDL   88 (174)
T ss_dssp             SSEEECCSSCC--SSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CcEEEeCCCCC--CccCCCc---CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEEC
Confidence            36788888888  8888865   37899999999999987 5678899999999999999888 544 578999999999


Q ss_pred             cCCCCCCCchh-hcCCCCCCEEeccCCCCccccch
Q 037969          253 LNSDIVRLPGE-LGQLTKLRLLDLTDCLQLKFIVP  286 (300)
Q Consensus       253 ~~~~l~~lp~~-~~~l~~L~~L~l~~~~~l~~lp~  286 (300)
                      ++|.++.+|.. +..+++|++|++++|+ +...+.
T Consensus        89 ~~N~l~~l~~~~~~~l~~L~~L~L~~N~-~~c~~~  122 (174)
T 2r9u_A           89 NDNHLKSIPRGAFDNLKSLTHIYLYNNP-WDCECR  122 (174)
T ss_dssp             CSSCCCCCCTTTTTTCTTCSEEECCSSC-BCTTBG
T ss_pred             CCCccceeCHHHhccccCCCEEEeCCCC-cccccc
Confidence            99999988876 8889999999999988 555554

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.39  E-value=2.4e-12  Score=99.98  Aligned_cols=101  Identities=21%  Similarity=0.311  Sum_probs=60.2

Q ss_pred             cEEEeecCCCcccCccccCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCcCCcc-cccCCCCcEEEccCC
Q 037969          155 SAISLLNSSIHEVSEEFECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPSS-IGLLANLQTLCLDQS  233 (300)
Q Consensus       155 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~-i~~l~~L~~L~l~~~  233 (300)
                      +.++++++.+..+|..+ .++++.|++++|.+  ..+++..|..+++|++|++++|.++.+|+. +..+++|++|++++|
T Consensus        12 ~~l~~s~n~l~~ip~~~-~~~l~~L~L~~N~i--~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N   88 (170)
T 3g39_A           12 TTVDCSGKSLASVPTGI-PTTTQVLYLYDNQI--TKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN   88 (170)
T ss_dssp             TEEECTTSCCSSCCSCC-CTTCSEEECCSSCC--CCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEeCCCCcCccCccC-CCCCcEEEcCCCcC--CccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence            45666666666666543 25666666666666  555444445666666666666666665443 456666666666666


Q ss_pred             CCCC-c-ccccCCCCcCEEEccCCCCC
Q 037969          234 MLGD-I-AIIGKLKNLEILSFLNSDIV  258 (300)
Q Consensus       234 ~l~~-p-~~~~~l~~L~~L~l~~~~l~  258 (300)
                      .+.. | ..+..+++|++|++++|.++
T Consensus        89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~  115 (170)
T 3g39_A           89 QLKSIPRGAFDNLKSLTHIWLLNNPWD  115 (170)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             ccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence            6665 3 33556666666666666554

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.38  E-value=3.2e-13  Score=118.86  Aligned_cols=151  Identities=13%  Similarity=0.156  Sum_probs=112.5

Q ss_pred             cccCCccEEEeecCCCcc-----cCccc-cC---------CCccEEecccCccccccCch--hHHhcCCcccEEEeeCCc
Q 037969          149 DALKKCSAISLLNSSIHE-----VSEEF-EC---------LQLEFLHISQNTFVEVNIPD--NIFKGMKTLRVIDLTRMR  211 (300)
Q Consensus       149 ~~~~~l~~L~l~~~~~~~-----~~~~~-~~---------~~L~~L~l~~~~~~~~~l~~--~~~~~l~~L~~L~l~~~~  211 (300)
                      ...++++.|++++|.+..     ++... .+         ++|++|++++|.+....++.  ..+..+++|++|++++|.
T Consensus       119 ~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~  198 (386)
T 2ca6_A          119 SKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNG  198 (386)
T ss_dssp             HHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSC
T ss_pred             HhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCC
Confidence            456788899999888732     22211 33         88999999988872223442  224678899999999998


Q ss_pred             CCc------CCcccccCCCCcEEEccCCCCC-----C-cccccCCCCcCEEEccCCCCCC-----Cchhh--cCCCCCCE
Q 037969          212 LFS------LPSSIGLLANLQTLCLDQSMLG-----D-IAIIGKLKNLEILSFLNSDIVR-----LPGEL--GQLTKLRL  272 (300)
Q Consensus       212 ~~~------lp~~i~~l~~L~~L~l~~~~l~-----~-p~~~~~l~~L~~L~l~~~~l~~-----lp~~~--~~l~~L~~  272 (300)
                      ++.      .|..+..+++|++|++++|.+.     . |..+..+++|++|++++|.++.     +|..+  +++++|++
T Consensus       199 l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~  278 (386)
T 2ca6_A          199 IRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQT  278 (386)
T ss_dssp             CCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCE
T ss_pred             CCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEE
Confidence            872      3447888899999999999884     3 6778889999999999998874     46666  44899999


Q ss_pred             EeccCCCCccc-----cchhhhcCCCCCCeeeC
Q 037969          273 LDLTDCLQLKF-----IVPNVLSSFTRLEELYM  300 (300)
Q Consensus       273 L~l~~~~~l~~-----lp~~~l~~L~~L~~L~l  300 (300)
                      |++++|. +..     +|.....++++|++|++
T Consensus       279 L~L~~n~-i~~~g~~~l~~~l~~~l~~L~~L~l  310 (386)
T 2ca6_A          279 LRLQYNE-IELDAVRTLKTVIDEKMPDLLFLEL  310 (386)
T ss_dssp             EECCSSC-CBHHHHHHHHHHHHHHCTTCCEEEC
T ss_pred             EECcCCc-CCHHHHHHHHHHHHhcCCCceEEEc
Confidence            9999998 554     88763377899998875

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.38  E-value=2.3e-12  Score=100.16  Aligned_cols=105  Identities=22%  Similarity=0.278  Sum_probs=91.9

Q ss_pred             CccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCcC-CcccccCCCCcEEEccCCCCCC-c-ccccCCCCcCEEE
Q 037969          175 QLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSL-PSSIGLLANLQTLCLDQSMLGD-I-AIIGKLKNLEILS  251 (300)
Q Consensus       175 ~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~~~l~~-p-~~~~~l~~L~~L~  251 (300)
                      ..+.++++++.+  ..+|..+   .+.|++|++++|.++.+ |..++.+++|++|++++|.+.. | ..+..+++|++|+
T Consensus        10 ~~~~l~~s~n~l--~~ip~~~---~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~   84 (170)
T 3g39_A           10 SGTTVDCSGKSL--ASVPTGI---PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLS   84 (170)
T ss_dssp             ETTEEECTTSCC--SSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCEEEeCCCCc--CccCccC---CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEE
Confidence            357899999999  8899865   48899999999999997 6679999999999999999998 5 4568999999999


Q ss_pred             ccCCCCCCCchh-hcCCCCCCEEeccCCCCccccc
Q 037969          252 FLNSDIVRLPGE-LGQLTKLRLLDLTDCLQLKFIV  285 (300)
Q Consensus       252 l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~l~~lp  285 (300)
                      +++|.++.+|.. +.++++|++|++++|+ +...+
T Consensus        85 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-~~c~c  118 (170)
T 3g39_A           85 LNDNQLKSIPRGAFDNLKSLTHIWLLNNP-WDCAC  118 (170)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSC-BCTTB
T ss_pred             CCCCccCEeCHHHhcCCCCCCEEEeCCCC-CCCCc
Confidence            999999999875 8899999999999998 44443

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.38  E-value=3e-12  Score=111.14  Aligned_cols=158  Identities=20%  Similarity=0.201  Sum_probs=124.2

Q ss_pred             EeccccccCCCc--cccCCccEEEeecCCCcccCccc--cCCCccEEeccc-CccccccCchhHHhcC-CcccEEEeeCC
Q 037969          137 VRNEVVWEWPDE--DALKKCSAISLLNSSIHEVSEEF--ECLQLEFLHISQ-NTFVEVNIPDNIFKGM-KTLRVIDLTRM  210 (300)
Q Consensus       137 ~~~~~~~~~~~~--~~~~~l~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~-~~~~~~~l~~~~~~~l-~~L~~L~l~~~  210 (300)
                      ...+.+..++..  ..+++++.|++++|.+..++...  ...++..+++.+ +.+  ..++...|..+ ..+++|++++|
T Consensus        87 ~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i--~~l~~~~f~~~~~~l~~L~L~~N  164 (350)
T 4ay9_X           87 EKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINI--HTIERNSFVGLSFESVILWLNKN  164 (350)
T ss_dssp             EEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTC--CEECTTSSTTSBSSCEEEECCSS
T ss_pred             ccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhcccccc--ccccccchhhcchhhhhhccccc
Confidence            333445444332  56788999999999998777654  556677788765 455  66776555555 46899999999


Q ss_pred             cCCcCCcccccCCCCcEEEccC-CCCCC-c-ccccCCCCcCEEEccCCCCCCCchhhcCCCCCCEEeccCCCCccccchh
Q 037969          211 RLFSLPSSIGLLANLQTLCLDQ-SMLGD-I-AIIGKLKNLEILSFLNSDIVRLPGELGQLTKLRLLDLTDCLQLKFIVPN  287 (300)
Q Consensus       211 ~~~~lp~~i~~l~~L~~L~l~~-~~l~~-p-~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~  287 (300)
                      .++.+|..+....+|+.+++.+ |.+.. | ..+..+++|++|++++|+++.+|..  .+.+|+.|.+.++..++.+|. 
T Consensus       165 ~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~--~~~~L~~L~~l~~~~l~~lP~-  241 (350)
T 4ay9_X          165 GIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSY--GLENLKKLRARSTYNLKKLPT-  241 (350)
T ss_dssp             CCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSS--SCTTCCEEECTTCTTCCCCCC-
T ss_pred             cccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChh--hhccchHhhhccCCCcCcCCC-
Confidence            9999988877888999999975 56777 5 4578999999999999999999974  477888888888888999996 


Q ss_pred             hhcCCCCCCeeeC
Q 037969          288 VLSSFTRLEELYM  300 (300)
Q Consensus       288 ~l~~L~~L~~L~l  300 (300)
                       +..+++|+.+++
T Consensus       242 -l~~l~~L~~l~l  253 (350)
T 4ay9_X          242 -LEKLVALMEASL  253 (350)
T ss_dssp             -TTTCCSCCEEEC
T ss_pred             -chhCcChhhCcC
Confidence             889999998864

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.36  E-value=8.7e-13  Score=116.08  Aligned_cols=147  Identities=21%  Similarity=0.258  Sum_probs=113.4

Q ss_pred             ccCCccEEEeecCCCcc-----cCccc-cCCCccEEecccCccccccCch-hH---HhcC---------CcccEEEeeCC
Q 037969          150 ALKKCSAISLLNSSIHE-----VSEEF-ECLQLEFLHISQNTFVEVNIPD-NI---FKGM---------KTLRVIDLTRM  210 (300)
Q Consensus       150 ~~~~l~~L~l~~~~~~~-----~~~~~-~~~~L~~L~l~~~~~~~~~l~~-~~---~~~l---------~~L~~L~l~~~  210 (300)
                      .+++++.|++++|.+..     ++..+ .+++|++|++++|.+  ..... .+   +..+         ++|++|++++|
T Consensus        92 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l--~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n  169 (386)
T 2ca6_A           92 KCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGL--GPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN  169 (386)
T ss_dssp             TCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCC--HHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSS
T ss_pred             hCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCC--CHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCC
Confidence            46789999999998854     55554 789999999999987  42221 11   1333         89999999999


Q ss_pred             cCCc--CC---cccccCCCCcEEEccCCCCCC-------cccccCCCCcCEEEccCCCC-----CCCchhhcCCCCCCEE
Q 037969          211 RLFS--LP---SSIGLLANLQTLCLDQSMLGD-------IAIIGKLKNLEILSFLNSDI-----VRLPGELGQLTKLRLL  273 (300)
Q Consensus       211 ~~~~--lp---~~i~~l~~L~~L~l~~~~l~~-------p~~~~~l~~L~~L~l~~~~l-----~~lp~~~~~l~~L~~L  273 (300)
                      .++.  +|   ..+..+++|++|++++|.+..       +..+..+++|++|++++|.+     ..+|..+..+++|++|
T Consensus       170 ~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L  249 (386)
T 2ca6_A          170 RLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLREL  249 (386)
T ss_dssp             CCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEE
T ss_pred             CCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEE
Confidence            9873  44   467788899999999998872       23788899999999999988     5688889999999999


Q ss_pred             eccCCCCccc-----cchhhh--cCCCCCCeeeC
Q 037969          274 DLTDCLQLKF-----IVPNVL--SSFTRLEELYM  300 (300)
Q Consensus       274 ~l~~~~~l~~-----lp~~~l--~~L~~L~~L~l  300 (300)
                      ++++|. ++.     +|.. +  +.+++|++|+|
T Consensus       250 ~L~~n~-i~~~~~~~l~~~-l~~~~~~~L~~L~L  281 (386)
T 2ca6_A          250 GLNDCL-LSARGAAAVVDA-FSKLENIGLQTLRL  281 (386)
T ss_dssp             ECTTCC-CCHHHHHHHHHH-HHTCSSCCCCEEEC
T ss_pred             ECCCCC-CchhhHHHHHHH-HhhccCCCeEEEEC
Confidence            999998 443     3443 5  44899999875

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.36  E-value=2.1e-14  Score=114.65  Aligned_cols=108  Identities=19%  Similarity=0.301  Sum_probs=95.1

Q ss_pred             ccCchhHHhcCCcccEEEeeCCcCCcCCcccccCCCCcEEEccCCCCCC-cccccCCCCcCEEEccCCCCCCCchhhcCC
Q 037969          189 VNIPDNIFKGMKTLRVIDLTRMRLFSLPSSIGLLANLQTLCLDQSMLGD-IAIIGKLKNLEILSFLNSDIVRLPGELGQL  267 (300)
Q Consensus       189 ~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~-p~~~~~l~~L~~L~l~~~~l~~lp~~~~~l  267 (300)
                      ..+|..+ ..+++|++|++++|.++.+| .++.+++|++|++++|.+.. |..+..+++|++|++++|.++.+| .++.+
T Consensus        38 ~~l~~~~-~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l  114 (198)
T 1ds9_A           38 EKMDATL-STLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEKL  114 (198)
T ss_dssp             CCCHHHH-HHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHHH
T ss_pred             hhhhHHH-hcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-ccccC
Confidence            4455554 89999999999999999998 89999999999999999988 777778899999999999999987 68999


Q ss_pred             CCCCEEeccCCCCccccch-hhhcCCCCCCeeeC
Q 037969          268 TKLRLLDLTDCLQLKFIVP-NVLSSFTRLEELYM  300 (300)
Q Consensus       268 ~~L~~L~l~~~~~l~~lp~-~~l~~L~~L~~L~l  300 (300)
                      ++|++|++++|. +..+|. ..+..+++|++|++
T Consensus       115 ~~L~~L~l~~N~-i~~~~~~~~l~~l~~L~~L~l  147 (198)
T 1ds9_A          115 VNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLL  147 (198)
T ss_dssp             HHSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEE
T ss_pred             CCCCEEECCCCc-CCchhHHHHHhcCCCCCEEEe
Confidence            999999999998 777664 34889999999874

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.30  E-value=3.6e-12  Score=111.18  Aligned_cols=147  Identities=20%  Similarity=0.260  Sum_probs=99.5

Q ss_pred             ccC-CccEEEeecCCCcccC-ccc-cC-----CCccEEecccCccccccCchh-H---HhcC-CcccEEEeeCCcCCcCC
Q 037969          150 ALK-KCSAISLLNSSIHEVS-EEF-EC-----LQLEFLHISQNTFVEVNIPDN-I---FKGM-KTLRVIDLTRMRLFSLP  216 (300)
Q Consensus       150 ~~~-~l~~L~l~~~~~~~~~-~~~-~~-----~~L~~L~l~~~~~~~~~l~~~-~---~~~l-~~L~~L~l~~~~~~~lp  216 (300)
                      .++ +++.|++++|.+.... ..+ .+     ++|+.|++++|.+  ...+.. +   +..+ ++|++|++++|.++..+
T Consensus        48 ~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l--~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~  125 (362)
T 3goz_A           48 NTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFL--SYKSSDELVKTLAAIPFTITVLDLGWNDFSSKS  125 (362)
T ss_dssp             TCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCG--GGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSC
T ss_pred             hCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcC--ChHHHHHHHHHHHhCCCCccEEECcCCcCCcHH
Confidence            344 7888888888885432 222 32     8888999988887  444433 2   2333 78899999988887754


Q ss_pred             c-cc----cc-CCCCcEEEccCCCCCC------cccccCCC-CcCEEEccCCCCCCCch-----hhcCC-CCCCEEeccC
Q 037969          217 S-SI----GL-LANLQTLCLDQSMLGD------IAIIGKLK-NLEILSFLNSDIVRLPG-----ELGQL-TKLRLLDLTD  277 (300)
Q Consensus       217 ~-~i----~~-l~~L~~L~l~~~~l~~------p~~~~~l~-~L~~L~l~~~~l~~lp~-----~~~~l-~~L~~L~l~~  277 (300)
                      . .+    .. ..+|++|++++|.+..      +..+..++ +|++|++++|.++..+.     .+... ++|++|++++
T Consensus       126 ~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~  205 (362)
T 3goz_A          126 SSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSA  205 (362)
T ss_dssp             HHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTT
T ss_pred             HHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCC
Confidence            3 33    23 2589999999888773      24445565 89999999988874432     34455 5899999999


Q ss_pred             CCCccc-----cchhhhcC-CCCCCeeeC
Q 037969          278 CLQLKF-----IVPNVLSS-FTRLEELYM  300 (300)
Q Consensus       278 ~~~l~~-----lp~~~l~~-L~~L~~L~l  300 (300)
                      |. ++.     ++.. +.. .++|++|+|
T Consensus       206 N~-i~~~~~~~l~~~-l~~~~~~L~~L~L  232 (362)
T 3goz_A          206 NL-LGLKSYAELAYI-FSSIPNHVVSLNL  232 (362)
T ss_dssp             SC-GGGSCHHHHHHH-HHHSCTTCCEEEC
T ss_pred             CC-CChhHHHHHHHH-HhcCCCCceEEEC
Confidence            88 555     5655 444 458888875

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.27  E-value=5.2e-12  Score=110.17  Aligned_cols=79  Identities=16%  Similarity=0.144  Sum_probs=33.8

Q ss_pred             cccEEEeeCCcCCcCC-cc----cccC-CCCcEEEccCCCCCC------cccccC-CCCcCEEEccCCCCCCCch-----
Q 037969          201 TLRVIDLTRMRLFSLP-SS----IGLL-ANLQTLCLDQSMLGD------IAIIGK-LKNLEILSFLNSDIVRLPG-----  262 (300)
Q Consensus       201 ~L~~L~l~~~~~~~lp-~~----i~~l-~~L~~L~l~~~~l~~------p~~~~~-l~~L~~L~l~~~~l~~lp~-----  262 (300)
                      +|++|++++|.++..+ ..    +... ++|++|++++|.+..      +..+.. .++|++|++++|.++..+.     
T Consensus       168 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~  247 (362)
T 3goz_A          168 NVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKL  247 (362)
T ss_dssp             TCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHH
T ss_pred             cccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHH
Confidence            4555555555544321 11    2222 345555555554433      122222 2345555555554443221     


Q ss_pred             hhcCCCCCCEEeccCCC
Q 037969          263 ELGQLTKLRLLDLTDCL  279 (300)
Q Consensus       263 ~~~~l~~L~~L~l~~~~  279 (300)
                      .+..+++|++|++++|.
T Consensus       248 ~~~~l~~L~~L~L~~n~  264 (362)
T 3goz_A          248 LKDSLKHLQTVYLDYDI  264 (362)
T ss_dssp             TTTTTTTCSEEEEEHHH
T ss_pred             HHhcCCCccEEEeccCC
Confidence            12344455555555544

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.19  E-value=8.4e-12  Score=112.16  Aligned_cols=145  Identities=17%  Similarity=0.196  Sum_probs=82.6

Q ss_pred             cCCccEEEeecCCCcc--cCccc-cCC----CccEEecccCccccc-----cCchhHHhcCCcccEEEeeCCcCCcC-Cc
Q 037969          151 LKKCSAISLLNSSIHE--VSEEF-ECL----QLEFLHISQNTFVEV-----NIPDNIFKGMKTLRVIDLTRMRLFSL-PS  217 (300)
Q Consensus       151 ~~~l~~L~l~~~~~~~--~~~~~-~~~----~L~~L~l~~~~~~~~-----~l~~~~~~~l~~L~~L~l~~~~~~~l-p~  217 (300)
                      .++++.|++++|.+..  +.... .++    +|++|++++|.+  .     .++.. +..+++|++|++++|.++.. +.
T Consensus        55 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i--~~~~~~~l~~~-l~~~~~L~~L~Ls~n~i~~~~~~  131 (461)
T 1z7x_W           55 NPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCL--TGAGCGVLSST-LRTLPTLQELHLSDNLLGDAGLQ  131 (461)
T ss_dssp             CTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCC--BGGGHHHHHHH-TTSCTTCCEEECCSSBCHHHHHH
T ss_pred             CCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCC--CHHHHHHHHHH-HccCCceeEEECCCCcCchHHHH
Confidence            4566777777766632  11111 233    577777777666  3     22332 35666777777777766532 22


Q ss_pred             ccc-----cCCCCcEEEccCCCCCC------cccccCCCCcCEEEccCCCCCCC-chhhc-----CCCCCCEEeccCCCC
Q 037969          218 SIG-----LLANLQTLCLDQSMLGD------IAIIGKLKNLEILSFLNSDIVRL-PGELG-----QLTKLRLLDLTDCLQ  280 (300)
Q Consensus       218 ~i~-----~l~~L~~L~l~~~~l~~------p~~~~~l~~L~~L~l~~~~l~~l-p~~~~-----~l~~L~~L~l~~~~~  280 (300)
                      .+.     ...+|++|++++|.+..      +..+..+++|++|++++|.+... +..+.     ..++|++|++++|. 
T Consensus       132 ~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-  210 (461)
T 1z7x_W          132 LLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCG-  210 (461)
T ss_dssp             HHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSC-
T ss_pred             HHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCC-
Confidence            221     24457777777776654      24445567777777777766522 11222     35577777777776 


Q ss_pred             ccc-----cchhhhcCCCCCCeeeC
Q 037969          281 LKF-----IVPNVLSSFTRLEELYM  300 (300)
Q Consensus       281 l~~-----lp~~~l~~L~~L~~L~l  300 (300)
                      ++.     ++.. +..+++|++|++
T Consensus       211 l~~~~~~~l~~~-l~~~~~L~~L~L  234 (461)
T 1z7x_W          211 VTSDNCRDLCGI-VASKASLRELAL  234 (461)
T ss_dssp             CBTTHHHHHHHH-HHHCTTCCEEEC
T ss_pred             CcHHHHHHHHHH-HHhCCCccEEec
Confidence            443     3443 667788887764

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.15  E-value=1e-11  Score=111.56  Aligned_cols=76  Identities=24%  Similarity=0.281  Sum_probs=40.7

Q ss_pred             CCCcEEEccCCCCCC------cccccCCCCcCEEEccCCCCCCC-chhhcC-----CCCCCEEeccCCCCcc-----ccc
Q 037969          223 ANLQTLCLDQSMLGD------IAIIGKLKNLEILSFLNSDIVRL-PGELGQ-----LTKLRLLDLTDCLQLK-----FIV  285 (300)
Q Consensus       223 ~~L~~L~l~~~~l~~------p~~~~~l~~L~~L~l~~~~l~~l-p~~~~~-----l~~L~~L~l~~~~~l~-----~lp  285 (300)
                      ++|++|++++|.+..      +..+..+++|++|++++|.++.. +..+..     .++|++|++++|. ++     .+|
T Consensus       313 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-i~~~~~~~l~  391 (461)
T 1z7x_W          313 CQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCD-VSDSSCSSLA  391 (461)
T ss_dssp             CCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CCHHHHHHHH
T ss_pred             ccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCC-CChhhHHHHH
Confidence            345555555555442      13334456666666666655422 222221     4567777777766 33     455


Q ss_pred             hhhhcCCCCCCeeeC
Q 037969          286 PNVLSSFTRLEELYM  300 (300)
Q Consensus       286 ~~~l~~L~~L~~L~l  300 (300)
                      .. +..+++|++|++
T Consensus       392 ~~-l~~~~~L~~L~l  405 (461)
T 1z7x_W          392 AT-LLANHSLRELDL  405 (461)
T ss_dssp             HH-HHHCCCCCEEEC
T ss_pred             HH-HHhCCCccEEEC
Confidence            54 666677776654

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*

Probab=99.14  E-value=6.7e-12  Score=119.91  Aligned_cols=98  Identities=19%  Similarity=0.237  Sum_probs=78.8

Q ss_pred             CcccCCC--ChhHHHHHHHHhcCCCCCCCCCCCcccccceeeccccCCchhH-HHHHHHhhhcCCCCCHH--HHHhhhhh
Q 037969            1 ARALRNK--SLHEWKNALRELQTPSVVNFEGVPAETYSSIELSFKYLKGEQL-KKIFLLCSLIGNSFWFT--DLFKYSMG   75 (300)
Q Consensus         1 g~~L~~k--~~~~W~~~l~~l~~~~~~~~~~~~~~i~~~l~lsy~~L~~~~l-k~cfl~~a~fp~~~~~~--~Li~~w~a   75 (300)
                      |+.|+++  +.++|+.+          +    ...+..++++||+.||++ + |.||+|||+||+++.|.  .++.+|++
T Consensus       334 Gs~Lr~k~~s~eeW~~~----------~----~~~I~aaLelSYd~Lp~e-elK~cFL~LAIFPed~~I~~elLa~LW~a  398 (1221)
T 1vt4_I          334 AESIRDGLATWDNWKHV----------N----CDKLTTIIESSLNVLEPA-EYRKMFDRLSVFPPSAHIPTILLSLIWFD  398 (1221)
T ss_dssp             HHHHHHSCSSHHHHHHC----------S----CHHHHHHHHHHHHHSCTT-HHHHHHHHTTSSCTTSCEEHHHHHHHHCS
T ss_pred             HHHHhCCCCCHHHHhcC----------C----hhHHHHHHHHHHHhCCHH-HHHHHHHHHhCCCCCCCCCHHHHHHHhcC
Confidence            3456666  67888753          1    234999999999999999 8 99999999999999998  68999999


Q ss_pred             cccccCchhHHHHHHHHHHHHHHHHHhcccccCCCCCcEEechhHHHHH
Q 037969           76 LGIFQGVNRMVDARNKLYALVHELRDSCLLLEGDSSEQFSMHDVVYDVV  124 (300)
Q Consensus        76 eg~i~~~~~~e~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~hdl~~~~~  124 (300)
                      +|.       ++    ..+++++|+++|+++..+...+|+|||+++++.
T Consensus       399 eGe-------ed----Ae~~L~eLvdRSLLq~d~~~~rYrMHDLllELr  436 (1221)
T 1vt4_I          399 VIK-------SD----VMVVVNKLHKYSLVEKQPKESTISIPSIYLELK  436 (1221)
T ss_dssp             SCS-------HH----HHHHHHHHHTSSSSSBCSSSSEEBCCCHHHHHH
T ss_pred             CCH-------HH----HHHHHHHHHhhCCEEEeCCCCEEEehHHHHHHh
Confidence            871       22    345688888999998765567899999998865

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.12  E-value=2.4e-11  Score=121.75  Aligned_cols=116  Identities=16%  Similarity=0.199  Sum_probs=86.9

Q ss_pred             cccCCCChhHHHHHHHHhcCCCCCCCCCC----CcccccceeeccccCCchhHHHHHHHhhhcCCCCCHH--HHHhhhhh
Q 037969            2 RALRNKSLHEWKNALRELQTPSVVNFEGV----PAETYSSIELSFKYLKGEQLKKIFLLCSLIGNSFWFT--DLFKYSMG   75 (300)
Q Consensus         2 ~~L~~k~~~~W~~~l~~l~~~~~~~~~~~----~~~i~~~l~lsy~~L~~~~lk~cfl~~a~fp~~~~~~--~Li~~w~a   75 (300)
                      +.|+.++ ..|+..++.+.......+...    ...+..++.+||+.||++ +|.||+|||+||+++.|+  .++.+|.+
T Consensus       329 ~~l~~~~-~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~-~~~~~~~l~~f~~~~~i~~~~~~~~~~~  406 (1249)
T 3sfz_A          329 ALLRDFP-NRWAYYLRQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLRED-IKDYYTDLSILQKDVKVPTKVLCVLWDL  406 (1249)
T ss_dssp             HHHHHSS-SCHHHHHHHHHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTT-THHHHHHGGGSCTTCCEEHHHHHHHHTC
T ss_pred             HHhhcCh-hHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhCCHH-HHHHHHHhCccCCCCeeCHHHHHHHhCC
Confidence            4455554 579999999866443322111    134889999999999999 999999999999999998  88999976


Q ss_pred             cccccCchhHHHHHHHHHHHHHHHHHhcccccCCCC--CcEEechhHHHHHHHHhhcC
Q 037969           76 LGIFQGVNRMVDARNKLYALVHELRDSCLLLEGDSS--EQFSMHDVVYDVVVSIACRD  131 (300)
Q Consensus        76 eg~i~~~~~~e~~~~~~~~~~~~L~~~~~~~~~~~~--~~~~~hdl~~~~~~~~~~~~  131 (300)
                      ++        +    .+.+++++|+++++++.....  .+|+||+++++++...+.++
T Consensus       407 ~~--------~----~~~~~l~~L~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~~  452 (1249)
T 3sfz_A          407 ET--------E----EVEDILQEFVNKSLLFCNRNGKSFCYYLHDLQVDFLTEKNRSQ  452 (1249)
T ss_dssp             CH--------H----HHHHHHHHHHHTTSCEEEESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred             CH--------H----HHHHHHHHHHhccceEEecCCCceEEEecHHHHHHHHhhhhHH
Confidence            52        2    234557888889999855322  25999999999998876543

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.11  E-value=2.1e-10  Score=99.28  Aligned_cols=101  Identities=18%  Similarity=0.119  Sum_probs=86.8

Q ss_pred             EEecccC-ccccccCchhHHhcCCcccEEEeeC-CcCCcCC-cccccCCCCcEEEccCCCCCC--cccccCCCCcCEEEc
Q 037969          178 FLHISQN-TFVEVNIPDNIFKGMKTLRVIDLTR-MRLFSLP-SSIGLLANLQTLCLDQSMLGD--IAIIGKLKNLEILSF  252 (300)
Q Consensus       178 ~L~l~~~-~~~~~~l~~~~~~~l~~L~~L~l~~-~~~~~lp-~~i~~l~~L~~L~l~~~~l~~--p~~~~~l~~L~~L~l  252 (300)
                      .++..++ .+  ..+|. + ..+.+|++|+|++ |.++.+| ..++.+.+|++|+|++|.+..  |..++.+++|++|+|
T Consensus        12 ~v~~~~~n~l--~~ip~-l-~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l   87 (347)
T 2ifg_A           12 GLRCTRDGAL--DSLHH-L-PGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNL   87 (347)
T ss_dssp             CEECCSSCCC--TTTTT-S-CSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEEC
T ss_pred             EEEcCCCCCC--CccCC-C-CCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeC
Confidence            4577777 77  78998 4 8899999999996 9999976 579999999999999999988  467899999999999


Q ss_pred             cCCCCCCCchhhcCCCCCCEEeccCCCCccc
Q 037969          253 LNSDIVRLPGELGQLTKLRLLDLTDCLQLKF  283 (300)
Q Consensus       253 ~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~  283 (300)
                      ++|.++.+|..+.....|+.|++.+|. +..
T Consensus        88 ~~N~l~~~~~~~~~~~~L~~l~l~~N~-~~c  117 (347)
T 2ifg_A           88 SFNALESLSWKTVQGLSLQELVLSGNP-LHC  117 (347)
T ss_dssp             CSSCCSCCCSTTTCSCCCCEEECCSSC-CCC
T ss_pred             CCCccceeCHHHcccCCceEEEeeCCC-ccC
Confidence            999999999876555559999999998 443

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.10  E-value=2.6e-10  Score=98.70  Aligned_cols=103  Identities=14%  Similarity=0.122  Sum_probs=86.9

Q ss_pred             EEEeecC-CCcccCccccCCCccEEeccc-CccccccCchhHHhcCCcccEEEeeCCcCCcC-CcccccCCCCcEEEccC
Q 037969          156 AISLLNS-SIHEVSEEFECLQLEFLHISQ-NTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSL-PSSIGLLANLQTLCLDQ  232 (300)
Q Consensus       156 ~L~l~~~-~~~~~~~~~~~~~L~~L~l~~-~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~  232 (300)
                      .++..++ .+..+|....+++|+.|++++ |.+  ..+|+..|.++.+|++|+|++|.++.+ |..++.+++|++|+|++
T Consensus        12 ~v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l--~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~   89 (347)
T 2ifg_A           12 GLRCTRDGALDSLHHLPGAENLTELYIENQQHL--QHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF   89 (347)
T ss_dssp             CEECCSSCCCTTTTTSCSCSCCSEEECCSCSSC--CEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred             EEEcCCCCCCCccCCCCCCCCeeEEEccCCCCC--CCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence            4677777 788899933889999999996 999  888877779999999999999999996 45689999999999999


Q ss_pred             CCCCC-cccccCCCCcCEEEccCCCCCCC
Q 037969          233 SMLGD-IAIIGKLKNLEILSFLNSDIVRL  260 (300)
Q Consensus       233 ~~l~~-p~~~~~l~~L~~L~l~~~~l~~l  260 (300)
                      |.+.. |+.+.....|+.|++.+|.+...
T Consensus        90 N~l~~~~~~~~~~~~L~~l~l~~N~~~c~  118 (347)
T 2ifg_A           90 NALESLSWKTVQGLSLQELVLSGNPLHCS  118 (347)
T ss_dssp             SCCSCCCSTTTCSCCCCEEECCSSCCCCC
T ss_pred             CccceeCHHHcccCCceEEEeeCCCccCC
Confidence            99998 65544443499999999988743

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.00  E-value=1.2e-09  Score=93.87  Aligned_cols=98  Identities=14%  Similarity=0.212  Sum_probs=83.8

Q ss_pred             CCcccEEEeeCCcCCcCCc-ccccCCCCcEEEccCCCCCC--cccccCCCCcC-EEEccCCCCCCCc-hhhcCCCCCCEE
Q 037969          199 MKTLRVIDLTRMRLFSLPS-SIGLLANLQTLCLDQSMLGD--IAIIGKLKNLE-ILSFLNSDIVRLP-GELGQLTKLRLL  273 (300)
Q Consensus       199 l~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~~l~~--p~~~~~l~~L~-~L~l~~~~l~~lp-~~~~~l~~L~~L  273 (300)
                      +.+|+.+++++|.++.+|+ .+..+.+|+.+++..+ +..  ...+..+++|+ .+.+.. +++.++ ..+.++++|+.+
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l  302 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV  302 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred             cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence            6789999999999998865 4888999999999887 665  47788999999 999988 777776 458899999999


Q ss_pred             eccCCCCccccchhhhcCCCCCCeee
Q 037969          274 DLTDCLQLKFIVPNVLSSFTRLEELY  299 (300)
Q Consensus       274 ~l~~~~~l~~lp~~~l~~L~~L~~L~  299 (300)
                      ++.++. +..++...+.++++|+.++
T Consensus       303 ~l~~n~-i~~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          303 LATGDK-ITTLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             EECSSC-CCEECTTTTCTTCCCCEEE
T ss_pred             EeCCCc-cCccchhhhcCCcchhhhc
Confidence            998888 8899988899999999886

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=98.99  E-value=5.2e-10  Score=103.64  Aligned_cols=148  Identities=19%  Similarity=0.174  Sum_probs=91.1

Q ss_pred             ccCCccEEEeecCCCcc-----cCccc-cCCCccEEecccCccccccCc----hhHHhcCCcccEEEeeCCcCCcCCccc
Q 037969          150 ALKKCSAISLLNSSIHE-----VSEEF-ECLQLEFLHISQNTFVEVNIP----DNIFKGMKTLRVIDLTRMRLFSLPSSI  219 (300)
Q Consensus       150 ~~~~l~~L~l~~~~~~~-----~~~~~-~~~~L~~L~l~~~~~~~~~l~----~~~~~~l~~L~~L~l~~~~~~~lp~~i  219 (300)
                      .+++++.|++.+|.+..     ++... .+++|+.|++.+|.+  ..+.    ..++.++++|++|+++++.+..+|..+
T Consensus       162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~--~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~  239 (592)
T 3ogk_B          162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEF--AKISPKDLETIARNCRSLVSVKVGDFEILELVGFF  239 (592)
T ss_dssp             HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCC--SSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHH
T ss_pred             hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCC--CccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHH
Confidence            45677778777776522     22222 677778887777766  3111    123356778888888887777777777


Q ss_pred             ccCCCCcEEEccCCCCC----C-cccccCCCCcCEEEccCCCCCCCchhhcCCCCCCEEeccCCCCccccchhhhcCCCC
Q 037969          220 GLLANLQTLCLDQSMLG----D-IAIIGKLKNLEILSFLNSDIVRLPGELGQLTKLRLLDLTDCLQLKFIVPNVLSSFTR  294 (300)
Q Consensus       220 ~~l~~L~~L~l~~~~l~----~-p~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~l~~L~~  294 (300)
                      +.+++|++|+++.....    . +..+..+++|+.|+++++....+|..+..+++|++|++++|......+...++.+++
T Consensus       240 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~  319 (592)
T 3ogk_B          240 KAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPN  319 (592)
T ss_dssp             HHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTT
T ss_pred             hhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcC
Confidence            77777777777643211    1 345566666777766665555666666667777777777776222222223566666


Q ss_pred             CCeee
Q 037969          295 LEELY  299 (300)
Q Consensus       295 L~~L~  299 (300)
                      |++|+
T Consensus       320 L~~L~  324 (592)
T 3ogk_B          320 LEVLE  324 (592)
T ss_dssp             CCEEE
T ss_pred             CCEEe
Confidence            66664

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.98  E-value=1.2e-09  Score=93.91  Aligned_cols=75  Identities=13%  Similarity=0.145  Sum_probs=50.7

Q ss_pred             CCCCcEEEccCCCCCC-c-ccccCCCCcCEEEccCCCCCCCchh-hcCCCCCC-EEeccCCCCccccchhhhcCCCCCCe
Q 037969          222 LANLQTLCLDQSMLGD-I-AIIGKLKNLEILSFLNSDIVRLPGE-LGQLTKLR-LLDLTDCLQLKFIVPNVLSSFTRLEE  297 (300)
Q Consensus       222 l~~L~~L~l~~~~l~~-p-~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~-~L~l~~~~~l~~lp~~~l~~L~~L~~  297 (300)
                      +.+|+.+++++|.+.. + ..+..+++|+.+++.++ ++.++.. +.++.+|+ .+.+.+ . +..++...+..+++|+.
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~-l~~I~~~aF~~c~~L~~  301 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-S-VTAIEFGAFMGCDNLRY  301 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-T-CCEECTTTTTTCTTEEE
T ss_pred             cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-c-ceEEchhhhhCCccCCE
Confidence            4567777777776666 3 55667777777777765 6666553 66677777 777766 3 66676666777777776


Q ss_pred             ee
Q 037969          298 LY  299 (300)
Q Consensus       298 L~  299 (300)
                      ++
T Consensus       302 l~  303 (329)
T 3sb4_A          302 VL  303 (329)
T ss_dssp             EE
T ss_pred             EE
Confidence            65

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.91  E-value=3.2e-10  Score=99.11  Aligned_cols=129  Identities=16%  Similarity=0.138  Sum_probs=84.8

Q ss_pred             CCccEEEeecCCCcc--cCccc-cCCCccEEecccCccccccCchhHH-----hcCCcccEEEeeCCcCCc-----CCcc
Q 037969          152 KKCSAISLLNSSIHE--VSEEF-ECLQLEFLHISQNTFVEVNIPDNIF-----KGMKTLRVIDLTRMRLFS-----LPSS  218 (300)
Q Consensus       152 ~~l~~L~l~~~~~~~--~~~~~-~~~~L~~L~l~~~~~~~~~l~~~~~-----~~l~~L~~L~l~~~~~~~-----lp~~  218 (300)
                      .+++.|++++|.+..  +.... .+++|+.|++++|.+  +......+     ...+.|++|+|++|.++.     ++..
T Consensus       101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l--~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~  178 (372)
T 3un9_A          101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSL--GPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEG  178 (372)
T ss_dssp             SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCC--CHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHH
T ss_pred             CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCC--CHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHH
Confidence            567788888887632  22222 456788888888776  33221111     234678888888887764     4455


Q ss_pred             cccCCCCcEEEccCCCCCC------cccccCCCCcCEEEccCCCCC-----CCchhhcCCCCCCEEeccCCCCccc
Q 037969          219 IGLLANLQTLCLDQSMLGD------IAIIGKLKNLEILSFLNSDIV-----RLPGELGQLTKLRLLDLTDCLQLKF  283 (300)
Q Consensus       219 i~~l~~L~~L~l~~~~l~~------p~~~~~l~~L~~L~l~~~~l~-----~lp~~~~~l~~L~~L~l~~~~~l~~  283 (300)
                      +...++|++|++++|.+..      +..+...++|++|++++|.++     .++..+...++|++|++++|. ++.
T Consensus       179 L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~-i~~  253 (372)
T 3un9_A          179 LAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNE-LSS  253 (372)
T ss_dssp             HHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSS-CCH
T ss_pred             HhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCC-CCH
Confidence            5667778888888887764      244566778888888888776     244455567788888888887 443

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.83  E-value=6.6e-10  Score=97.06  Aligned_cols=105  Identities=14%  Similarity=0.090  Sum_probs=50.2

Q ss_pred             CCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCcC-Cccc-----ccCCCCcEEEccCCCCCC------cccc
Q 037969          174 LQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSL-PSSI-----GLLANLQTLCLDQSMLGD------IAII  241 (300)
Q Consensus       174 ~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~l-p~~i-----~~l~~L~~L~l~~~~l~~------p~~~  241 (300)
                      ++|+.|++++|.+- ......+...+++|+.|+|++|.++.. ...+     ...++|++|++++|.+..      +..+
T Consensus       101 ~~L~~L~Ls~n~l~-~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L  179 (372)
T 3un9_A          101 HALDEVNLASCQLD-PAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGL  179 (372)
T ss_dssp             SCEEEEECTTCCCC-HHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHH
T ss_pred             CCceEEEecCCCCC-HHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHH
Confidence            45666666655541 111112223344556666666655431 1111     123456666666665543      1223


Q ss_pred             cCCCCcCEEEccCCCCC-----CCchhhcCCCCCCEEeccCCC
Q 037969          242 GKLKNLEILSFLNSDIV-----RLPGELGQLTKLRLLDLTDCL  279 (300)
Q Consensus       242 ~~l~~L~~L~l~~~~l~-----~lp~~~~~l~~L~~L~l~~~~  279 (300)
                      ...++|++|++++|.++     .++..+...++|++|++++|.
T Consensus       180 ~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~  222 (372)
T 3un9_A          180 AGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNG  222 (372)
T ss_dssp             HTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSC
T ss_pred             hcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCC
Confidence            45555666666665554     123344455556666666655

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=98.81  E-value=5.4e-09  Score=96.77  Aligned_cols=124  Identities=17%  Similarity=0.173  Sum_probs=72.9

Q ss_pred             cccCCccEEEeecCCCcc-----cCccc-cCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcC----------
Q 037969          149 DALKKCSAISLLNSSIHE-----VSEEF-ECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRL----------  212 (300)
Q Consensus       149 ~~~~~l~~L~l~~~~~~~-----~~~~~-~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~----------  212 (300)
                      ...++++.|+++.+.+..     ++... .+++|++|++.+|.+  ..+|.. +..+++|+.|+++....          
T Consensus       189 ~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~--~~l~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~  265 (592)
T 3ogk_B          189 QHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEI--LELVGF-FKAAANLEEFCGGSLNEDIGMPEKYMN  265 (592)
T ss_dssp             HHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBG--GGGHHH-HHHCTTCCEEEECBCCCCTTCTTSSSC
T ss_pred             hcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccH--HHHHHH-HhhhhHHHhhcccccccccchHHHHHH
Confidence            346789999999888752     33333 789999999999887  667654 47788888888874321          


Q ss_pred             -----------------CcCCcccccCCCCcEEEccCCCCCC--c-ccccCCCCcCEEEccCCCCC--CCchhhcCCCCC
Q 037969          213 -----------------FSLPSSIGLLANLQTLCLDQSMLGD--I-AIIGKLKNLEILSFLNSDIV--RLPGELGQLTKL  270 (300)
Q Consensus       213 -----------------~~lp~~i~~l~~L~~L~l~~~~l~~--p-~~~~~l~~L~~L~l~~~~l~--~lp~~~~~l~~L  270 (300)
                                       ..+|..+..+++|++|++++|.+..  + ..+..+++|++|+++++ +.  .++.....+++|
T Consensus       266 l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~-~~~~~l~~~~~~~~~L  344 (592)
T 3ogk_B          266 LVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNV-IGDRGLEVLAQYCKQL  344 (592)
T ss_dssp             CCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTC
T ss_pred             hhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCc-cCHHHHHHHHHhCCCC
Confidence                             1233334444555555555555433  1 22445555555555522 11  233233445566


Q ss_pred             CEEecc
Q 037969          271 RLLDLT  276 (300)
Q Consensus       271 ~~L~l~  276 (300)
                      ++|+++
T Consensus       345 ~~L~L~  350 (592)
T 3ogk_B          345 KRLRIE  350 (592)
T ss_dssp             CEEEEE
T ss_pred             CEEEee
Confidence            666666

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.78  E-value=5.5e-09  Score=96.73  Aligned_cols=148  Identities=16%  Similarity=0.115  Sum_probs=90.4

Q ss_pred             ccCCccEEEeecCCCc-ccCc-cc-cCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCc-----CCccccc
Q 037969          150 ALKKCSAISLLNSSIH-EVSE-EF-ECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFS-----LPSSIGL  221 (300)
Q Consensus       150 ~~~~l~~L~l~~~~~~-~~~~-~~-~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~-----lp~~i~~  221 (300)
                      ..++++.|+++++.+. ..+. .. .+++|+.|++.+|..........+..++++|++|++++|.++.     ++.....
T Consensus       103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~  182 (594)
T 2p1m_B          103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT  182 (594)
T ss_dssp             HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTT
T ss_pred             hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhc
Confidence            4567778888777662 2222 22 5778888888777332222122334567788888888777554     2222235


Q ss_pred             CCCCcEEEccCCC--CCC--c-ccccCCCCcCEEEccCC-CCCCCchhhcCCCCCCEEeccCCCC------ccccchhhh
Q 037969          222 LANLQTLCLDQSM--LGD--I-AIIGKLKNLEILSFLNS-DIVRLPGELGQLTKLRLLDLTDCLQ------LKFIVPNVL  289 (300)
Q Consensus       222 l~~L~~L~l~~~~--l~~--p-~~~~~l~~L~~L~l~~~-~l~~lp~~~~~l~~L~~L~l~~~~~------l~~lp~~~l  289 (300)
                      +++|++|++++|.  +..  . .-+..+++|++|++++| .+..+|..+.++++|++|+++.+..      +..++.. +
T Consensus       183 ~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~-l  261 (594)
T 2p1m_B          183 YTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVA-L  261 (594)
T ss_dssp             CCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHH-H
T ss_pred             CCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHH-H
Confidence            5678888887775  221  1 22345678888888877 5556777777788888887665531      2344444 6


Q ss_pred             cCCCCCCee
Q 037969          290 SSFTRLEEL  298 (300)
Q Consensus       290 ~~L~~L~~L  298 (300)
                      +++++|+.|
T Consensus       262 ~~~~~L~~L  270 (594)
T 2p1m_B          262 SGCKELRCL  270 (594)
T ss_dssp             HTCTTCCEE
T ss_pred             hcCCCcccc
Confidence            777777766

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.67  E-value=4.2e-09  Score=97.49  Aligned_cols=56  Identities=23%  Similarity=0.151  Sum_probs=27.3

Q ss_pred             CCCCcCEEEccCCCCC--CCchhhcCCCCCCEEeccCCCCccccchhhhcCCCCCCeee
Q 037969          243 KLKNLEILSFLNSDIV--RLPGELGQLTKLRLLDLTDCLQLKFIVPNVLSSFTRLEELY  299 (300)
Q Consensus       243 ~l~~L~~L~l~~~~l~--~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~  299 (300)
                      .+++|++|++++|.++  .++..+.++++|++|++++|..-..++ .+...+++|++|+
T Consensus       287 ~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~-~l~~~~~~L~~L~  344 (594)
T 2p1m_B          287 VCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLE-VLASTCKDLRELR  344 (594)
T ss_dssp             HHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHH-HHHHHCTTCCEEE
T ss_pred             hhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCccCHHHHH-HHHHhCCCCCEEE
Confidence            4456666666666544  122224456666666666652111122 1133456666654

>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}

Probab=98.64  E-value=2.8e-08  Score=92.19  Aligned_cols=105  Identities=15%  Similarity=0.211  Sum_probs=78.8

Q ss_pred             hHHHHHHHHhcCCCCCCCC----CCCcccccceeeccccCCchhHHHHHHHhhhcCCCCCHH--HHHhhhhhcccccCch
Q 037969           10 HEWKNALRELQTPSVVNFE----GVPAETYSSIELSFKYLKGEQLKKIFLLCSLIGNSFWFT--DLFKYSMGLGIFQGVN   83 (300)
Q Consensus        10 ~~W~~~l~~l~~~~~~~~~----~~~~~i~~~l~lsy~~L~~~~lk~cfl~~a~fp~~~~~~--~Li~~w~aeg~i~~~~   83 (300)
                      .+|+.+++.+.........    .....+..++..||+.||++ .|.||++||+||+++.++  .+...|.+++      
T Consensus       336 ~~w~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~-~~~~l~~la~f~~~~~i~~~~l~~l~~~~~------  408 (591)
T 1z6t_A          336 NRWEYYLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLRED-IKDYYTDLSILQKDVKVPTKVLCILWDMET------  408 (591)
T ss_dssp             TCHHHHHHHHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTT-THHHHHHGGGCCTTCCEEHHHHHHHHTCCH------
T ss_pred             hhHHHHHHHHHHhHHHHhhhccccchHHHHHHHHHHHHhCCHH-HHHHHHHccccCCCCccCHHHHHHHhccCH------
Confidence            4699999988764322111    11235888999999999999 999999999999999988  6777886531      


Q ss_pred             hHHHHHHHHHHHHHHHHHhcccccC--CCCCcEEechhHHHHHHHH
Q 037969           84 RMVDARNKLYALVHELRDSCLLLEG--DSSEQFSMHDVVYDVVVSI  127 (300)
Q Consensus        84 ~~e~~~~~~~~~~~~L~~~~~~~~~--~~~~~~~~hdl~~~~~~~~  127 (300)
                        ++    ..+++++|++++++...  +...+|+||+++++++...
T Consensus       409 --~~----~~~~l~~L~~~~Ll~~~~~~~~~~~~~H~lv~~~~~~~  448 (591)
T 1z6t_A          409 --EE----VEDILQEFVNKSLLFCDRNGKSFRYYLHDLQVDFLTEK  448 (591)
T ss_dssp             --HH----HHHHHHHHHHTTSSEEEEETTEEEEECCHHHHHHHHHH
T ss_pred             --HH----HHHHHHHHHhCcCeEEecCCCccEEEEcHHHHHHHHhh
Confidence              22    34567888889999743  2334799999999999876

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.43  E-value=3.4e-07  Score=79.38  Aligned_cols=58  Identities=14%  Similarity=0.272  Sum_probs=28.3

Q ss_pred             CCCCcEEEccCCCCCC--cccc---cCCCCcCEEEccCCCCCC-----CchhhcCCCCCCEEeccCCC
Q 037969          222 LANLQTLCLDQSMLGD--IAII---GKLKNLEILSFLNSDIVR-----LPGELGQLTKLRLLDLTDCL  279 (300)
Q Consensus       222 l~~L~~L~l~~~~l~~--p~~~---~~l~~L~~L~l~~~~l~~-----lp~~~~~l~~L~~L~l~~~~  279 (300)
                      +++|++|++++|.+..  +..+   ..+++|++|+++.|.+..     ++..+.++++|+.|++++|.
T Consensus       251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~  318 (362)
T 2ra8_A          251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNY  318 (362)
T ss_dssp             CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred             CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCc
Confidence            4555555555555432  1111   234555555555555542     33333445555555555554

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.38  E-value=1.8e-06  Score=76.04  Aligned_cols=140  Identities=11%  Similarity=0.139  Sum_probs=58.6

Q ss_pred             cCCccEEEeecCCCcccCccc-cCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCcCCcc-cccCCCCcEE
Q 037969          151 LKKCSAISLLNSSIHEVSEEF-ECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPSS-IGLLANLQTL  228 (300)
Q Consensus       151 ~~~l~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~-i~~l~~L~~L  228 (300)
                      +.+|+.+.+..+.+..++... .+.+|+.+.+..+ +  ..++...|.++.+|+.+.+..+ ++.++.. +.+ .+|+.+
T Consensus       179 c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~-l--~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i  253 (401)
T 4fdw_A          179 CYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVT-L--KEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTV  253 (401)
T ss_dssp             CTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTT-C--CEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEE
T ss_pred             cccCCeeecCCCcceEechhhEeecccCEEEeCCc-h--heehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEE
Confidence            344555555554444444332 3344444444422 2  3444444555555555555432 2322211 212 334444


Q ss_pred             EccCCCCCC--cccccCCCCcCEEEccCCCCC-----CCch-hhcCCCCCCEEeccCCCCccccchhhhcCCCCCCee
Q 037969          229 CLDQSMLGD--IAIIGKLKNLEILSFLNSDIV-----RLPG-ELGQLTKLRLLDLTDCLQLKFIVPNVLSSFTRLEEL  298 (300)
Q Consensus       229 ~l~~~~l~~--p~~~~~l~~L~~L~l~~~~l~-----~lp~-~~~~l~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L  298 (300)
                      .+.. .+..  ...+..+++|+.+.+.++.+.     .++. .+..+++|+.+.+.+ . +..++...+.++++|+.+
T Consensus       254 ~lp~-~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~-i~~I~~~aF~~c~~L~~l  328 (401)
T 4fdw_A          254 KLPN-GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-S-IRILGQGLLGGNRKVTQL  328 (401)
T ss_dssp             EEET-TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-T-CCEECTTTTTTCCSCCEE
T ss_pred             EeCC-CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-c-eEEEhhhhhcCCCCccEE
Confidence            4321 1222  233444555555555444332     2222 244444455554442 1 344444444444444444

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.35  E-value=5.5e-07  Score=78.10  Aligned_cols=145  Identities=16%  Similarity=0.212  Sum_probs=95.9

Q ss_pred             cccCCccEEEeecCCCc----------ccCccc-cCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCc-CC
Q 037969          149 DALKKCSAISLLNSSIH----------EVSEEF-ECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFS-LP  216 (300)
Q Consensus       149 ~~~~~l~~L~l~~~~~~----------~~~~~~-~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~-lp  216 (300)
                      ..+++++.|.+......          .+.... .+|+|+.|.+.++..  ..++. +  .+++|+.|++..+.+.. ..
T Consensus       136 ~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~--l~l~~-~--~~~~L~~L~L~~~~l~~~~l  210 (362)
T 2ra8_A          136 EKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNN--LSIGK-K--PRPNLKSLEIISGGLPDSVV  210 (362)
T ss_dssp             HHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBT--CBCCS-C--BCTTCSEEEEECSBCCHHHH
T ss_pred             hhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCC--ceecc-c--cCCCCcEEEEecCCCChHHH
Confidence            45678999988654321          122333 679999999988743  34554 2  37899999999887754 12


Q ss_pred             cccc--cCCCCcEEEccCC--CC-CC--c----ccc--cCCCCcCEEEccCCCCCC-Cchhh---cCCCCCCEEeccCCC
Q 037969          217 SSIG--LLANLQTLCLDQS--ML-GD--I----AII--GKLKNLEILSFLNSDIVR-LPGEL---GQLTKLRLLDLTDCL  279 (300)
Q Consensus       217 ~~i~--~l~~L~~L~l~~~--~l-~~--p----~~~--~~l~~L~~L~l~~~~l~~-lp~~~---~~l~~L~~L~l~~~~  279 (300)
                      ..+.  .+++|++|+|+.+  .. ..  .    +.+  ..+++|++|++++|.+.. .+..+   ..+++|++|+++.|.
T Consensus       211 ~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~  290 (362)
T 2ra8_A          211 EDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGV  290 (362)
T ss_dssp             HHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSC
T ss_pred             HHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCC
Confidence            2333  6899999998532  11 11  1    122  357899999999998762 22223   357899999999887


Q ss_pred             Cccc-----cchhhhcCCCCCCeeeC
Q 037969          280 QLKF-----IVPNVLSSFTRLEELYM  300 (300)
Q Consensus       280 ~l~~-----lp~~~l~~L~~L~~L~l  300 (300)
                       ++.     ++.. +..+++|+.|++
T Consensus       291 -L~d~G~~~L~~~-L~~l~~L~~L~L  314 (362)
T 2ra8_A          291 -LTDEGARLLLDH-VDKIKHLKFINM  314 (362)
T ss_dssp             -CBHHHHHHHHTT-HHHHTTCSEEEC
T ss_pred             -CChHHHHHHHhh-cccCCcceEEEC
Confidence             544     3433 456788988875

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.31  E-value=6.4e-07  Score=68.96  Aligned_cols=83  Identities=18%  Similarity=0.267  Sum_probs=57.4

Q ss_pred             CcccEEEeeCCcCCcC-CcccccCCCCcEEEccCCC-CCC--cccccCC----CCcCEEEccCC-CCC--CCchhhcCCC
Q 037969          200 KTLRVIDLTRMRLFSL-PSSIGLLANLQTLCLDQSM-LGD--IAIIGKL----KNLEILSFLNS-DIV--RLPGELGQLT  268 (300)
Q Consensus       200 ~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~~~-l~~--p~~~~~l----~~L~~L~l~~~-~l~--~lp~~~~~l~  268 (300)
                      ..|+.|+++++.++.. -..+..+++|++|+|++|. +++  ...+..+    ++|++|++++| +++  .+ ..+.+++
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl-~~L~~~~  139 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGI-IALHHFR  139 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHH-HHGGGCT
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHH-HHHhcCC
Confidence            3577777777776652 2446677888888888875 554  5666664    36888888888 576  23 3466788


Q ss_pred             CCCEEeccCCCCccc
Q 037969          269 KLRLLDLTDCLQLKF  283 (300)
Q Consensus       269 ~L~~L~l~~~~~l~~  283 (300)
                      +|++|++++|..++.
T Consensus       140 ~L~~L~L~~c~~Itd  154 (176)
T 3e4g_A          140 NLKYLFLSDLPGVKE  154 (176)
T ss_dssp             TCCEEEEESCTTCCC
T ss_pred             CCCEEECCCCCCCCc
Confidence            888888888875554

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.28  E-value=9.9e-07  Score=72.89  Aligned_cols=78  Identities=26%  Similarity=0.311  Sum_probs=56.3

Q ss_pred             hcCCcccEEEeeCCcCCcC---CcccccCCCCcEEEccCCCCCCcccccCCC--CcCEEEccCCCCC-CCch-------h
Q 037969          197 KGMKTLRVIDLTRMRLFSL---PSSIGLLANLQTLCLDQSMLGDIAIIGKLK--NLEILSFLNSDIV-RLPG-------E  263 (300)
Q Consensus       197 ~~l~~L~~L~l~~~~~~~l---p~~i~~l~~L~~L~l~~~~l~~p~~~~~l~--~L~~L~l~~~~l~-~lp~-------~  263 (300)
                      .++++|++|+|++|.++.+   |..++.+++|++|+|++|.+.....+..+.  +|++|++++|.+. .+|.       .
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~i  246 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAI  246 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccCCcceEEccCCcCccccCcchhHHHHH
Confidence            4677888888888888764   355667888888888888887754444444  7888888888776 3442       2


Q ss_pred             hcCCCCCCEEe
Q 037969          264 LGQLTKLRLLD  274 (300)
Q Consensus       264 ~~~l~~L~~L~  274 (300)
                      +..+++|+.|+
T Consensus       247 l~~~P~L~~LD  257 (267)
T 3rw6_A          247 RERFPKLLRLD  257 (267)
T ss_dssp             HHHCTTCCEES
T ss_pred             HHHCcccCeEC
Confidence            56778888776

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.26  E-value=9.4e-07  Score=69.16  Aligned_cols=107  Identities=11%  Similarity=0.114  Sum_probs=73.0

Q ss_pred             cCCCccEEecccC-cccc---ccCchhHHhcCCcccEEEeeCCcCCc-----CCcccccCCCCcEEEccCCCCCC-----
Q 037969          172 ECLQLEFLHISQN-TFVE---VNIPDNIFKGMKTLRVIDLTRMRLFS-----LPSSIGLLANLQTLCLDQSMLGD-----  237 (300)
Q Consensus       172 ~~~~L~~L~l~~~-~~~~---~~l~~~~~~~l~~L~~L~l~~~~~~~-----lp~~i~~l~~L~~L~l~~~~l~~-----  237 (300)
                      ..+.|+.|++.+| .+-.   ..+... +...++|++|+|++|.+..     +...+...++|++|+|++|.+..     
T Consensus        34 ~~~~L~~L~L~~n~~i~~~g~~~l~~~-L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~  112 (185)
T 1io0_A           34 NDPDLEEVNLNNIMNIPVPTLKACAEA-LKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA  112 (185)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHHH-HTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred             cCCCCCEEEecCCCCCCHHHHHHHHHH-HHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHH
Confidence            4566777777776 5510   012222 2456778888888888764     34455666788888888888775     


Q ss_pred             -cccccCCCCcCEEEc--cCCCCCC-----CchhhcCCCCCCEEeccCCC
Q 037969          238 -IAIIGKLKNLEILSF--LNSDIVR-----LPGELGQLTKLRLLDLTDCL  279 (300)
Q Consensus       238 -p~~~~~l~~L~~L~l--~~~~l~~-----lp~~~~~l~~L~~L~l~~~~  279 (300)
                       ...+...++|++|++  ++|.+..     +...+...+.|++|++++|.
T Consensus       113 l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~  162 (185)
T 1io0_A          113 LVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ  162 (185)
T ss_dssp             HHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             HHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence             255667778899999  7787762     44556667889999998887

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.20  E-value=2.7e-06  Score=70.30  Aligned_cols=79  Identities=24%  Similarity=0.273  Sum_probs=64.1

Q ss_pred             ccCCCCcEEEccCCCCCCc----ccccCCCCcCEEEccCCCCCCCchhhcCCC--CCCEEeccCCCCccccc------hh
Q 037969          220 GLLANLQTLCLDQSMLGDI----AIIGKLKNLEILSFLNSDIVRLPGELGQLT--KLRLLDLTDCLQLKFIV------PN  287 (300)
Q Consensus       220 ~~l~~L~~L~l~~~~l~~p----~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~--~L~~L~l~~~~~l~~lp------~~  287 (300)
                      .++++|+.|+|++|.+...    ..+..+++|+.|+|++|.++.+ ..+..+.  +|+.|++++|+..+.+|      ..
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~  245 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA  245 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence            5688999999999999872    4456899999999999999977 3455555  99999999999655555      23


Q ss_pred             hhcCCCCCCeee
Q 037969          288 VLSSFTRLEELY  299 (300)
Q Consensus       288 ~l~~L~~L~~L~  299 (300)
                      ++..+++|+.|+
T Consensus       246 il~~~P~L~~LD  257 (267)
T 3rw6_A          246 IRERFPKLLRLD  257 (267)
T ss_dssp             HHHHCTTCCEES
T ss_pred             HHHHCcccCeEC
Confidence            478899999886

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.19  E-value=1.5e-06  Score=67.94  Aligned_cols=103  Identities=16%  Similarity=0.102  Sum_probs=81.0

Q ss_pred             HhcCCcccEEEeeCC-cCCc-----CCcccccCCCCcEEEccCCCCCC--c----ccccCCCCcCEEEccCCCCCC----
Q 037969          196 FKGMKTLRVIDLTRM-RLFS-----LPSSIGLLANLQTLCLDQSMLGD--I----AIIGKLKNLEILSFLNSDIVR----  259 (300)
Q Consensus       196 ~~~l~~L~~L~l~~~-~~~~-----lp~~i~~l~~L~~L~l~~~~l~~--p----~~~~~l~~L~~L~l~~~~l~~----  259 (300)
                      +...+.|++|+|++| .+..     +...+...++|++|+|++|.+..  .    ..+...++|++|++++|.+..    
T Consensus        32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~  111 (185)
T 1io0_A           32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL  111 (185)
T ss_dssp             HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred             HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence            467889999999999 8864     45566777899999999999875  2    445566899999999999883    


Q ss_pred             -CchhhcCCCCCCEEec--cCCCCccc-----cchhhhcCCCCCCeeeC
Q 037969          260 -LPGELGQLTKLRLLDL--TDCLQLKF-----IVPNVLSSFTRLEELYM  300 (300)
Q Consensus       260 -lp~~~~~l~~L~~L~l--~~~~~l~~-----lp~~~l~~L~~L~~L~l  300 (300)
                       +...+...+.|++|++  ++|. ++.     +.. .+...++|++|+|
T Consensus       112 ~l~~~L~~n~~L~~L~L~~~~N~-i~~~g~~~l~~-~L~~n~~L~~L~L  158 (185)
T 1io0_A          112 ALVEALQSNTSLIELRIDNQSQP-LGNNVEMEIAN-MLEKNTTLLKFGY  158 (185)
T ss_dssp             HHHHGGGGCSSCCEEECCCCSSC-CCHHHHHHHHH-HHHHCSSCCEEEC
T ss_pred             HHHHHHHhCCCceEEEecCCCCC-CCHHHHHHHHH-HHHhCCCcCEEec
Confidence             5667888899999999  7787 443     333 2666788998875

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.18  E-value=1.4e-06  Score=67.12  Aligned_cols=78  Identities=17%  Similarity=0.204  Sum_probs=61.4

Q ss_pred             CCCcEEEccCCCCCC--cccccCCCCcCEEEccCC-CCCC-CchhhcCC----CCCCEEeccCCCCccccchhhhcCCCC
Q 037969          223 ANLQTLCLDQSMLGD--IAIIGKLKNLEILSFLNS-DIVR-LPGELGQL----TKLRLLDLTDCLQLKFIVPNVLSSFTR  294 (300)
Q Consensus       223 ~~L~~L~l~~~~l~~--p~~~~~l~~L~~L~l~~~-~l~~-lp~~~~~l----~~L~~L~l~~~~~l~~lp~~~l~~L~~  294 (300)
                      ..|+.||+++|.+..  ...+..+++|++|++++| .++. --..++.+    ++|++|++++|..++.---..+..+++
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~  140 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN  140 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence            479999999999876  688899999999999999 6772 11345554    379999999998776543333778999


Q ss_pred             CCeeeC
Q 037969          295 LEELYM  300 (300)
Q Consensus       295 L~~L~l  300 (300)
                      |++|++
T Consensus       141 L~~L~L  146 (176)
T 3e4g_A          141 LKYLFL  146 (176)
T ss_dssp             CCEEEE
T ss_pred             CCEEEC
Confidence            999874

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.16  E-value=9.4e-06  Score=71.41  Aligned_cols=120  Identities=13%  Similarity=0.230  Sum_probs=64.5

Q ss_pred             CccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCcCCcc-----------------------cccCCCCcEEEcc
Q 037969          175 QLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPSS-----------------------IGLLANLQTLCLD  231 (300)
Q Consensus       175 ~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~-----------------------i~~l~~L~~L~l~  231 (300)
                      +|+.+.+.. .+  ..+++..|.++.+|+.+++..+.++.+|..                       +..+.+|+.+.+.
T Consensus       158 ~L~~i~lp~-~l--~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~l~~I~~~aF~~~~~L~~l~l~  234 (401)
T 4fdw_A          158 TVQEIVFPS-TL--EQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVTLKEIGSQAFLKTSQLKTIEIP  234 (401)
T ss_dssp             CCCEEECCT-TC--CEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTTCCEECTTTTTTCTTCCCEECC
T ss_pred             CceEEEeCC-Cc--cEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEeCCchheehhhHhhCCCCCCEEecC
Confidence            455555543 23  344444445555555555555544444333                       3444455555554


Q ss_pred             CCCCCC--cccccCCCCcCEEEccCCCCCCCch-hhcCCCCCCEEeccCCCC----ccccchhhhcCCCCCCeeeC
Q 037969          232 QSMLGD--IAIIGKLKNLEILSFLNSDIVRLPG-ELGQLTKLRLLDLTDCLQ----LKFIVPNVLSSFTRLEELYM  300 (300)
Q Consensus       232 ~~~l~~--p~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~----l~~lp~~~l~~L~~L~~L~l  300 (300)
                      .+ +..  ...+.. .+|+.+.+ .++++.++. .+.++++|+.+.+.++..    ...++...+..+++|+.+.+
T Consensus       235 ~~-l~~I~~~aF~~-~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l  307 (401)
T 4fdw_A          235 EN-VSTIGQEAFRE-SGITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEI  307 (401)
T ss_dssp             TT-CCEECTTTTTT-CCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECC
T ss_pred             CC-ccCcccccccc-CCccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEe
Confidence            32 222  122333 45555555 234455533 467788888888877652    12577767888888887764

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=96.79  E-value=0.012  Score=50.85  Aligned_cols=83  Identities=11%  Similarity=0.195  Sum_probs=35.4

Q ss_pred             CchhHHhcCCcccEEEeeCCcCCcCC-cccccCCCCcEEEccCCCCCC--cccccCCCCcCEEEccCCCCCCCch-hhcC
Q 037969          191 IPDNIFKGMKTLRVIDLTRMRLFSLP-SSIGLLANLQTLCLDQSMLGD--IAIIGKLKNLEILSFLNSDIVRLPG-ELGQ  266 (300)
Q Consensus       191 l~~~~~~~l~~L~~L~l~~~~~~~lp-~~i~~l~~L~~L~l~~~~l~~--p~~~~~l~~L~~L~l~~~~l~~lp~-~~~~  266 (300)
                      +....|.++..|+.+.+.. .++.++ ..+..+.+|+.+.+.++.+..  ...+..+.+|+.+.+.. +++.++. .+.+
T Consensus       254 I~~~aF~~~~~l~~i~l~~-~i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~-~l~~I~~~aF~~  331 (379)
T 4h09_A          254 IGSFLLQNCTALKTLNFYA-KVKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPT-ALKTIQVYAFKN  331 (379)
T ss_dssp             ECTTTTTTCTTCCEEEECC-CCSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCT-TCCEECTTTTTT
T ss_pred             eCccccceeehhccccccc-cceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCc-cccEEHHHHhhC
Confidence            3333344444444444432 233332 223444455555554444443  23444455555555532 2333332 2444


Q ss_pred             CCCCCEEec
Q 037969          267 LTKLRLLDL  275 (300)
Q Consensus       267 l~~L~~L~l  275 (300)
                      +++|+.+.+
T Consensus       332 C~~L~~i~i  340 (379)
T 4h09_A          332 CKALSTISY  340 (379)
T ss_dssp             CTTCCCCCC
T ss_pred             CCCCCEEEE
Confidence            445554444

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=96.46  E-value=0.019  Score=50.01  Aligned_cols=56  Identities=13%  Similarity=0.132  Sum_probs=24.7

Q ss_pred             cccCCCCcCEEEccCCCCCCCch-hhcCCCCCCEEeccCCCCccccchhhhcCCCCCCee
Q 037969          240 IIGKLKNLEILSFLNSDIVRLPG-ELGQLTKLRLLDLTDCLQLKFIVPNVLSSFTRLEEL  298 (300)
Q Consensus       240 ~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L  298 (300)
                      .+..+.+|+.+.+.. .++.++. .+.++++|+.+.+..+  +..++...+.++++|+.+
T Consensus       315 aF~~c~~L~~i~lp~-~v~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L~~i  371 (394)
T 4fs7_A          315 AFESCTSLVSIDLPY-LVEEIGKRSFRGCTSLSNINFPLS--LRKIGANAFQGCINLKKV  371 (394)
T ss_dssp             TTTTCTTCCEECCCT-TCCEECTTTTTTCTTCCEECCCTT--CCEECTTTBTTCTTCCEE
T ss_pred             hhcCCCCCCEEEeCC-cccEEhHHhccCCCCCCEEEECcc--ccEehHHHhhCCCCCCEE
Confidence            344444555555432 2333322 2444455555555332  344444444445555444

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=96.25  E-value=0.031  Score=48.26  Aligned_cols=122  Identities=21%  Similarity=0.204  Sum_probs=81.0

Q ss_pred             cCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCcCC-cccccCCCCcEEEccCCCCCC--cccccCCCCcC
Q 037969          172 ECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLP-SSIGLLANLQTLCLDQSMLGD--IAIIGKLKNLE  248 (300)
Q Consensus       172 ~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp-~~i~~l~~L~~L~l~~~~l~~--p~~~~~l~~L~  248 (300)
                      .+.+++.+.+..+.   ..+....|.++..|+.+.+..+ ++.++ ..+....+|+.+.+..+ +..  ...+..+.+|+
T Consensus       215 ~~~~l~~i~~~~~~---~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~  289 (379)
T 4h09_A          215 YGKNLKKITITSGV---TTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLT  289 (379)
T ss_dssp             TCSSCSEEECCTTC---CEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCC
T ss_pred             cccccceeeeccce---eEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccc
Confidence            56677777766442   3455555667778888887664 55553 34566777888877543 333  35567778888


Q ss_pred             EEEccCCCCCCCch-hhcCCCCCCEEeccCCCCccccchhhhcCCCCCCeeeC
Q 037969          249 ILSFLNSDIVRLPG-ELGQLTKLRLLDLTDCLQLKFIVPNVLSSFTRLEELYM  300 (300)
Q Consensus       249 ~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l  300 (300)
                      .+.+.++.++.++. .+.++.+|+.+.+..+  ++.++...+.++++|+.+.+
T Consensus       290 ~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L~~i~i  340 (379)
T 4h09_A          290 KVVMDNSAIETLEPRVFMDCVKLSSVTLPTA--LKTIQVYAFKNCKALSTISY  340 (379)
T ss_dssp             EEEECCTTCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCCCCC
T ss_pred             cccccccccceehhhhhcCCCCCCEEEcCcc--ccEEHHHHhhCCCCCCEEEE
Confidence            88887777777754 3677788888888543  56676666777777776643

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.15  E-value=0.01  Score=43.05  Aligned_cols=54  Identities=19%  Similarity=0.257  Sum_probs=34.8

Q ss_pred             EEecccCccccc--cCchhHHhcCCcccEEEeeCCcCCcCCcc-cccCCCCcEEEccCCCCC
Q 037969          178 FLHISQNTFVEV--NIPDNIFKGMKTLRVIDLTRMRLFSLPSS-IGLLANLQTLCLDQSMLG  236 (300)
Q Consensus       178 ~L~l~~~~~~~~--~l~~~~~~~l~~L~~L~l~~~~~~~lp~~-i~~l~~L~~L~l~~~~l~  236 (300)
                      .++-+++.+  .  .+|..+   ..+|++|+|++|.++.+|.. +..+.+|++|+|++|.+.
T Consensus        12 ~v~Cs~~~L--~~~~vP~~l---p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           12 LVDCGRRGL--TWASLPTAF---PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             EEECCSSCC--CTTTSCSCC---CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             EEEeCCCCC--ccccCCCCC---CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            455555555  4  666533   34577777777777777543 566777777777777654

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.06  E-value=0.013  Score=42.54  Aligned_cols=55  Identities=13%  Similarity=0.224  Sum_probs=44.0

Q ss_pred             EEEeecCCCc--ccCccccCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCC
Q 037969          156 AISLLNSSIH--EVSEEFECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLF  213 (300)
Q Consensus       156 ~L~l~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~  213 (300)
                      .++.+++.+.  .+|..+ -++++.|++++|.+  ..+|...|..+++|++|+|.+|.+.
T Consensus        12 ~v~Cs~~~L~~~~vP~~l-p~~l~~L~Ls~N~l--~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAF-PVDTTELVLTGNNL--TALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             EEECCSSCCCTTTSCSCC-CTTCSEEECTTSCC--SSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             EEEeCCCCCccccCCCCC-CcCCCEEECCCCcC--CccChhhhhhccccCEEEecCCCee
Confidence            5667777776  777532 23689999999999  8899888899999999999998765

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=96.02  E-value=0.016  Score=50.49  Aligned_cols=54  Identities=28%  Similarity=0.433  Sum_probs=30.2

Q ss_pred             cCCccEEEeecCCCcccCccc--cCCCccEEecccCccccccCchhHHhcCCcccEEEee
Q 037969          151 LKKCSAISLLNSSIHEVSEEF--ECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLT  208 (300)
Q Consensus       151 ~~~l~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~  208 (300)
                      ..+|+.+.+. +.+..++...  +|++|+.+.+..+ +  ..+++..|.++..|+.+.+.
T Consensus        70 c~~L~~i~lp-~~i~~I~~~aF~~c~~L~~i~lp~~-l--~~I~~~aF~~c~~L~~i~~p  125 (394)
T 4fs7_A           70 CRKVTEIKIP-STVREIGEFAFENCSKLEIINIPDS-V--KMIGRCTFSGCYALKSILLP  125 (394)
T ss_dssp             CTTEEEEECC-TTCCEECTTTTTTCTTCCEECCCTT-C--CEECTTTTTTCTTCCCCCCC
T ss_pred             CCCceEEEeC-CCccCcchhHhhCCCCCcEEEeCCC-c--eEccchhhcccccchhhccc
Confidence            4456666664 3344554432  6677777777644 3  45555555666666655443

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=95.96  E-value=0.025  Score=49.24  Aligned_cols=118  Identities=16%  Similarity=0.286  Sum_probs=75.6

Q ss_pred             cCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCcCCc-ccccCCCCcEEEccCCCCCC--cccccCCCCcC
Q 037969          172 ECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPS-SIGLLANLQTLCLDQSMLGD--IAIIGKLKNLE  248 (300)
Q Consensus       172 ~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~~l~~--p~~~~~l~~L~  248 (300)
                      .+.+|+.+.+..+.   ..+....|.++..|+.+.+. +.++.+++ .+..+.+|+.+.+..+ ++.  ...+..+.+|+
T Consensus       263 ~c~~L~~i~lp~~~---~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~  337 (394)
T 4gt6_A          263 SCAYLASVKMPDSV---VSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLE  337 (394)
T ss_dssp             TCSSCCEEECCTTC---CEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCC
T ss_pred             ecccccEEeccccc---ceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCC
Confidence            56777777776543   34556666778888888885 34666643 4667788888888654 444  36677888888


Q ss_pred             EEEccCCCCCCCch-hhcCCCCCCEEeccCCCCccccchhhhcCCCCCCeee
Q 037969          249 ILSFLNSDIVRLPG-ELGQLTKLRLLDLTDCLQLKFIVPNVLSSFTRLEELY  299 (300)
Q Consensus       249 ~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~  299 (300)
                      .+.+.. +++.++. .+.++++|+.+++.++..  .. . .+....+|+.+.
T Consensus       338 ~i~ip~-sv~~I~~~aF~~C~~L~~i~~~~~~~--~~-~-~~~~~~~L~~i~  384 (394)
T 4gt6_A          338 RIAIPS-SVTKIPESAFSNCTALNNIEYSGSRS--QW-N-AISTDSGLQNLP  384 (394)
T ss_dssp             EEEECT-TCCBCCGGGGTTCTTCCEEEESSCHH--HH-H-TCBCCCCC----
T ss_pred             EEEECc-ccCEEhHhHhhCCCCCCEEEECCcee--eh-h-hhhccCCCCEEE
Confidence            888854 4666654 477888888888877641  11 1 244555665543

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=95.42  E-value=0.049  Score=47.35  Aligned_cols=105  Identities=12%  Similarity=0.192  Sum_probs=77.1

Q ss_pred             CchhHHhcCCcccEEEeeCCcCCcC-CcccccCCCCcEEEccCCCCCC--cccccCCCCcCEEEccCCCCCCCch-hhcC
Q 037969          191 IPDNIFKGMKTLRVIDLTRMRLFSL-PSSIGLLANLQTLCLDQSMLGD--IAIIGKLKNLEILSFLNSDIVRLPG-ELGQ  266 (300)
Q Consensus       191 l~~~~~~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~~~l~~--p~~~~~l~~L~~L~l~~~~l~~lp~-~~~~  266 (300)
                      +....|.++..|+.+.+..+. ..+ ...+.+...|+.+.+.. .+..  ...+..+.+|+.+.+.. +++.+.. .+.+
T Consensus       256 i~~~aF~~c~~L~~i~lp~~~-~~I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~-~v~~I~~~aF~~  332 (394)
T 4gt6_A          256 IETHAFDSCAYLASVKMPDSV-VSIGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPE-GITQILDDAFAG  332 (394)
T ss_dssp             ECTTTTTTCSSCCEEECCTTC-CEECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCT-TCCEECTTTTTT
T ss_pred             cccceeeecccccEEeccccc-ceecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCC-cccEehHhHhhC
Confidence            444556778888888886543 333 34567788899998863 3444  36678889999999975 4666654 4788


Q ss_pred             CCCCCEEeccCCCCccccchhhhcCCCCCCeeeC
Q 037969          267 LTKLRLLDLTDCLQLKFIVPNVLSSFTRLEELYM  300 (300)
Q Consensus       267 l~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l  300 (300)
                      +.+|+.+.+..+  +..++...+.++++|+.+++
T Consensus       333 C~~L~~i~ip~s--v~~I~~~aF~~C~~L~~i~~  364 (394)
T 4gt6_A          333 CEQLERIAIPSS--VTKIPESAFSNCTALNNIEY  364 (394)
T ss_dssp             CTTCCEEEECTT--CCBCCGGGGTTCTTCCEEEE
T ss_pred             CCCCCEEEECcc--cCEEhHhHhhCCCCCCEEEE
Confidence            999999999654  67888877999999998753

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=95.23  E-value=0.024  Score=44.22  Aligned_cols=105  Identities=10%  Similarity=0.050  Sum_probs=69.9

Q ss_pred             cCCCccEEecccC-cccccc-----CchhHHhcCCcccEEEeeCCcCCc-----CCcccccCCCCcEEEccCCCCCC--c
Q 037969          172 ECLQLEFLHISQN-TFVEVN-----IPDNIFKGMKTLRVIDLTRMRLFS-----LPSSIGLLANLQTLCLDQSMLGD--I  238 (300)
Q Consensus       172 ~~~~L~~L~l~~~-~~~~~~-----l~~~~~~~l~~L~~L~l~~~~~~~-----lp~~i~~l~~L~~L~l~~~~l~~--p  238 (300)
                      .-+.|+.|++.++ .+  +.     +-+. +..-..|+.|+|++|.+..     +.+.+..-+.|+.|+|++|.+..  .
T Consensus        39 ~n~~L~~L~L~~nn~i--gd~ga~~la~a-L~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga  115 (197)
T 1pgv_A           39 DDTDLKEVNINNMKRV--SKERIRSLIEA-ACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELL  115 (197)
T ss_dssp             TCSSCCEEECTTCCSS--CHHHHHHHHHH-HTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHH
T ss_pred             cCCCccEEECCCCCCC--CHHHHHHHHHH-HhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHH
Confidence            4467889999875 55  21     1222 2455789999999998873     34455556789999999998875  1


Q ss_pred             ----ccccCCCCcCEEEccCCCC---C-----CCchhhcCCCCCCEEeccCCC
Q 037969          239 ----AIIGKLKNLEILSFLNSDI---V-----RLPGELGQLTKLRLLDLTDCL  279 (300)
Q Consensus       239 ----~~~~~l~~L~~L~l~~~~l---~-----~lp~~~~~l~~L~~L~l~~~~  279 (300)
                          +.+..-+.|++|+++++..   .     .+-..+..=+.|+.|+++.+.
T Consensus       116 ~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~  168 (197)
T 1pgv_A          116 ARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS  168 (197)
T ss_dssp             HHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             HHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence                4555666799999986532   2     133334555788888887654

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=94.82  E-value=0.033  Score=43.40  Aligned_cols=102  Identities=14%  Similarity=0.175  Sum_probs=55.5

Q ss_pred             CCccEEEeecC-CCcc-----cCccc-cCCCccEEecccCcccccc-----CchhHHhcCCcccEEEeeCCcCCc-----
Q 037969          152 KKCSAISLLNS-SIHE-----VSEEF-ECLQLEFLHISQNTFVEVN-----IPDNIFKGMKTLRVIDLTRMRLFS-----  214 (300)
Q Consensus       152 ~~l~~L~l~~~-~~~~-----~~~~~-~~~~L~~L~l~~~~~~~~~-----l~~~~~~~l~~L~~L~l~~~~~~~-----  214 (300)
                      +.++.|++.++ .+..     +.... .-+.|+.|++.+|.+  +.     +-+. +..-+.|+.|+|++|.|..     
T Consensus        41 ~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~i--gd~ga~alA~a-L~~N~tL~~L~L~~N~Ig~~Ga~a  117 (197)
T 1pgv_A           41 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAI--SDSEARGLIEL-IETSPSLRVLNVESNFLTPELLAR  117 (197)
T ss_dssp             SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCC--BHHHHTTHHHH-HHHCSSCCEEECCSSBCCHHHHHH
T ss_pred             CCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCC--ChHHHHHHHHH-HhcCCccCeEecCCCcCCHHHHHH
Confidence            34677777764 5421     11222 345677777777766  31     1112 2344677777777777763     


Q ss_pred             CCcccccCCCCcEEEccCCC---CCC--c----ccccCCCCcCEEEccCCC
Q 037969          215 LPSSIGLLANLQTLCLDQSM---LGD--I----AIIGKLKNLEILSFLNSD  256 (300)
Q Consensus       215 lp~~i~~l~~L~~L~l~~~~---l~~--p----~~~~~l~~L~~L~l~~~~  256 (300)
                      +-+.+..-..|+.|+|+++.   +..  .    +.+..-+.|+.|+++.+.
T Consensus       118 la~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~  168 (197)
T 1pgv_A          118 LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS  168 (197)
T ss_dssp             HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             HHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence            23344444567777776542   232  1    333444567777776553

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	300
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	9e-08
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	8e-07
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	5e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	4e-06
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	2e-04
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-04
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	0.002
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.003
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.004

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 50.4 bits (119), Expect = 9e-08
 Identities = 35/193 (18%), Positives = 69/193 (35%), Gaps = 29/193 (15%)

Query: 129 CRDQHVFLVRNEVVWEWPDEDALKKCSAISLLNSSIHEVSEEFECLQLEFLHISQNTFVE 188
             +    +  N  + +      L     +SL  + + ++        L  L ++ N    
Sbjct: 196 LTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISN 255

Query: 189 VNIPDNIFKGMKTLRVIDLTRMRLFSLPSSIGL---------------------LANLQT 227
           +  P     G+  L  + L   ++ ++    GL                     L NL  
Sbjct: 256 L-AP---LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTY 311

Query: 228 LCLDQSMLGDIAIIGKLKNLEILSFLNSDIVRLPGELGQLTKLRLLDLTDCLQLKFIVPN 287
           L L  + + DI+ +  L  L+ L F N+ +  +   L  LT +  L      Q+  + P 
Sbjct: 312 LTLYFNNISDISPVSSLTKLQRLFFANNKVSDVS-SLANLTNINWLSAGHN-QISDLTP- 368

Query: 288 VLSSFTRLEELYM 300
            L++ TR+ +L +
Sbjct: 369 -LANLTRITQLGL 380

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 47.7 bits (112), Expect = 8e-07
 Identities = 29/149 (19%), Positives = 55/149 (36%), Gaps = 6/149 (4%)

Query: 129 CRDQHVFLVRNEVVWEWPDEDALKKCSAISLLNSSIHEVSEEFECLQLEFLHISQNTFVE 188
             +     + N  +        L K + + L  + I  +S       L  L +++N    
Sbjct: 240 LTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQL-- 297

Query: 189 VNIPDNIFKGMKTLRVIDLTRMRLFSLPSSIGLLANLQTLCLDQSMLGDIAIIGKLKNLE 248
                +    +K L  + L    +  +   +  L  LQ L    + + D++ +  L N+ 
Sbjct: 298 --EDISPISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFANNKVSDVSSLANLTNIN 354

Query: 249 ILSFLNSDIVRLPGELGQLTKLRLLDLTD 277
            LS  ++ I  L   L  LT++  L L D
Sbjct: 355 WLSAGHNQISDLT-PLANLTRITQLGLND 382

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.8 bits (89), Expect = 5e-04
 Identities = 18/79 (22%), Positives = 32/79 (40%), Gaps = 4/79 (5%)

Query: 222 LANLQTLCLDQSMLGDIAIIGKLKNLEILSFLNSDIVRLPGELGQLTKLRLLDLTDCLQL 281
           LA      L ++ + D      L  +  L      I  + G +  L  L  ++ ++  QL
Sbjct: 21  LAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDG-VEYLNNLTQINFSNN-QL 78

Query: 282 KFIVPNVLSSFTRLEELYM 300
             I P  L + T+L ++ M
Sbjct: 79  TDITP--LKNLTKLVDILM 95

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 45.6 bits (106), Expect = 4e-06
 Identities = 14/83 (16%), Positives = 33/83 (39%), Gaps = 5/83 (6%)

Query: 190 NIPDNIFKGMKTLRVIDLTRMRLFSLPSSIGLLANLQTLCLDQSMLGDIAIIGKLKNLEI 249
           N   ++     +L  ++++  +L  LP+       L+ L    + L ++      +NL+ 
Sbjct: 274 NEIRSLCDLPPSLEELNVSNNKLIELPALPP---RLERLIASFNHLAEV--PELPQNLKQ 328

Query: 250 LSFLNSDIVRLPGELGQLTKLRL 272
           L    + +   P     +  LR+
Sbjct: 329 LHVEYNPLREFPDIPESVEDLRM 351

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.0 bits (90), Expect = 2e-04
 Identities = 14/96 (14%), Positives = 34/96 (35%), Gaps = 1/96 (1%)

Query: 206 DLTRMRLFSLPSSIGLLANLQTLCLDQSMLGDIAIIGKLKNLEILSFLNSDIVRLPGELG 265
           +L   ++  L   +    +     LD   L     +       +L+  +S    L     
Sbjct: 3   ELKPEQVEQLKLIMSKRYDGSQQALDLKGLRSDPDLVAQNIDVVLNRRSSMAATLRIIEE 62

Query: 266 QLTKLRLLDLTDC-LQLKFIVPNVLSSFTRLEELYM 300
            + +L  L+L++  L     + +++     L+ L +
Sbjct: 63  NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNL 98

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 39.3 bits (90), Expect = 3e-04
 Identities = 23/127 (18%), Positives = 45/127 (35%), Gaps = 4/127 (3%)

Query: 176 LEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSL-PSSIGLLANLQTLCLDQSM 234
              L +  N   E  I D  FK +K L  + L   ++  + P +   L  L+ L L ++ 
Sbjct: 33  TALLDLQNNKITE--IKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90

Query: 235 LGDIAIIGKLKNLEILSFLNSDIVRLPGELGQLTKLRLLDLTDC-LQLKFIVPNVLSSFT 293
           L ++         E+    N            L ++ +++L    L+   I         
Sbjct: 91  LKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMK 150

Query: 294 RLEELYM 300
           +L  + +
Sbjct: 151 KLSYIRI 157

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 37.0 bits (84), Expect = 0.002
 Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 2/58 (3%)

Query: 199 MKTLRVIDLTRMRLF-SLPSSIGLLANLQTLCLDQSML-GDIAIIGKLKNLEILSFLN 254
            K L  +DL   R++ +LP  +  L  L +L +  + L G+I   G L+  ++ ++ N
Sbjct: 243 SKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYAN 300

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 36.2 bits (82), Expect = 0.003
 Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 1/68 (1%)

Query: 210 MRLFSLPSSIGLLANLQTLCLDQSMLGDIAIIGKLKNLEILSFLNSDIVRLPGELGQLTK 269
               S  + +  L+ L TL  D + + DI+ +  L NL  +   N+ I  +   L   + 
Sbjct: 160 NAQVSDLTPLANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQISDVS-PLANTSN 218

Query: 270 LRLLDLTD 277
           L ++ LT+
Sbjct: 219 LFIVTLTN 226

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 34.7 bits (79), Expect = 0.004
 Identities = 21/107 (19%), Positives = 44/107 (41%), Gaps = 4/107 (3%)

Query: 196 FKGMKTLRVIDLTRMRLFSLPSSIGLLANLQTLCLDQSMLGDIAIIGKLKNLEILSFLNS 255
            + +  +  +DL+  RL +LP ++  L  L+ L    + L ++  +  L  L+ L   N+
Sbjct: 16  LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNN 75

Query: 256 DIVRLP--GELGQLTKLRLLDLTD--CLQLKFIVPNVLSSFTRLEEL 298
            + +      L    +L LL+L      Q + I   +      +  +
Sbjct: 76  RLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 122

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	300
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.75
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.73
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.7
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.7
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.69
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.67
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.66
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.65
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.63
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.61
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.59
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.58
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.57
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.56
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.54
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.53
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.53
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.52
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.51
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.51
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.5
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.5
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.41
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.29
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.28
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.22
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.18
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.15
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.1
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.03
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.96
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.86
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.28
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.27
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.21
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.16
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.13
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	97.97
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.34
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.23
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.86
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.58

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.75  E-value=3.3e-17  Score=130.33  Aligned_cols=157  Identities=20%  Similarity=0.322  Sum_probs=137.4

Q ss_pred             EEEeccccccCCCccccCCccEEEeecCCCcccCccccCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCc
Q 037969          135 FLVRNEVVWEWPDEDALKKCSAISLLNSSIHEVSEEFECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFS  214 (300)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~  214 (300)
                      ....+..+..++....+++++.|++++|.+..++....+++|+.|++.+|.+  ..+|.  +..+++|+.|+++++.+..
T Consensus        51 L~l~~~~i~~l~~l~~l~~L~~L~L~~n~i~~l~~~~~l~~L~~L~l~~n~i--~~l~~--l~~l~~L~~L~l~~~~~~~  126 (210)
T d1h6ta2          51 IIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKV--KDLSS--LKDLKKLKSLSLEHNGISD  126 (210)
T ss_dssp             EECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCC--CCGGG--GTTCTTCCEEECTTSCCCC
T ss_pred             EECcCCCCCCchhHhhCCCCCEEeCCCccccCccccccCccccccccccccc--ccccc--ccccccccccccccccccc
Confidence            4455566666666678899999999999998888777999999999999998  77875  5889999999999999887


Q ss_pred             CCcccccCCCCcEEEccCCCCCCcccccCCCCcCEEEccCCCCCCCchhhcCCCCCCEEeccCCCCccccchhhhcCCCC
Q 037969          215 LPSSIGLLANLQTLCLDQSMLGDIAIIGKLKNLEILSFLNSDIVRLPGELGQLTKLRLLDLTDCLQLKFIVPNVLSSFTR  294 (300)
Q Consensus       215 lp~~i~~l~~L~~L~l~~~~l~~p~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~l~~L~~  294 (300)
                      ++ .+..++.++.++++++.+..+..+..+++|+++++++|.++.++. ++++++|+.|++++|. ++.+|.  +..+++
T Consensus       127 ~~-~l~~l~~l~~l~~~~n~l~~~~~~~~l~~L~~l~l~~n~l~~i~~-l~~l~~L~~L~Ls~N~-i~~l~~--l~~l~~  201 (210)
T d1h6ta2         127 IN-GLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNH-ISDLRA--LAGLKN  201 (210)
T ss_dssp             CG-GGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCBCGG--GTTCTT
T ss_pred             cc-ccccccccccccccccccccccccccccccccccccccccccccc-ccCCCCCCEEECCCCC-CCCChh--hcCCCC
Confidence            75 478899999999999999887778899999999999999998874 8999999999999998 788875  899999


Q ss_pred             CCeeeC
Q 037969          295 LEELYM  300 (300)
Q Consensus       295 L~~L~l  300 (300)
                      |++|+|
T Consensus       202 L~~L~L  207 (210)
T d1h6ta2         202 LDVLEL  207 (210)
T ss_dssp             CSEEEE
T ss_pred             CCEEEc
Confidence            999975

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.73  E-value=8.5e-17  Score=126.78  Aligned_cols=155  Identities=21%  Similarity=0.298  Sum_probs=134.3

Q ss_pred             EEEeccccccCCCccccCCccEEEeecCCCcccCccccCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCc
Q 037969          135 FLVRNEVVWEWPDEDALKKCSAISLLNSSIHEVSEEFECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFS  214 (300)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~  214 (300)
                      ....+..+..++....+++++.|++++|.+..++....+++|+.|++.+|..  ..++.  +.+++.|+.|+++++....
T Consensus        45 L~l~~~~i~~l~~l~~l~nL~~L~Ls~N~l~~~~~l~~l~~L~~L~l~~n~~--~~~~~--l~~l~~L~~L~l~~~~~~~  120 (199)
T d2omxa2          45 LQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQI--ADITP--LANLTNLTGLTLFNNQITD  120 (199)
T ss_dssp             EECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCC--CCCGG--GTTCTTCSEEECCSSCCCC
T ss_pred             EECCCCCCCCccccccCCCcCcCccccccccCcccccCCccccccccccccc--ccccc--ccccccccccccccccccc
Confidence            4455555666666678899999999999998888766999999999999988  77775  5889999999999998877


Q ss_pred             CCcccccCCCCcEEEccCCCCCCcccccCCCCcCEEEccCCCCCCCchhhcCCCCCCEEeccCCCCccccchhhhcCCCC
Q 037969          215 LPSSIGLLANLQTLCLDQSMLGDIAIIGKLKNLEILSFLNSDIVRLPGELGQLTKLRLLDLTDCLQLKFIVPNVLSSFTR  294 (300)
Q Consensus       215 lp~~i~~l~~L~~L~l~~~~l~~p~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~l~~L~~  294 (300)
                      .+ .+..+++|++|++++|.+..++.+..+++|+.|++.+|.++.++ .++++++|++|++++|+ +..+|.  ++.+++
T Consensus       121 ~~-~~~~l~~L~~L~l~~n~l~~~~~l~~~~~L~~L~l~~n~l~~l~-~l~~l~~L~~L~ls~N~-i~~i~~--l~~L~~  195 (199)
T d2omxa2         121 ID-PLKNLTNLNRLELSSNTISDISALSGLTSLQQLNFSSNQVTDLK-PLANLTTLERLDISSNK-VSDISV--LAKLTN  195 (199)
T ss_dssp             CG-GGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCG-GGTTCTTCCEEECCSSC-CCCCGG--GGGCTT
T ss_pred             cc-ccchhhhhHHhhhhhhhhcccccccccccccccccccccccCCc-cccCCCCCCEEECCCCC-CCCCcc--ccCCCC
Confidence            64 47889999999999999888777999999999999999999886 58999999999999998 888875  889999


Q ss_pred             CCee
Q 037969          295 LEEL  298 (300)
Q Consensus       295 L~~L  298 (300)
                      |++|
T Consensus       196 L~~L  199 (199)
T d2omxa2         196 LESL  199 (199)
T ss_dssp             CSEE
T ss_pred             CCcC
Confidence            9986

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=1.1e-16  Score=131.91  Aligned_cols=146  Identities=23%  Similarity=0.266  Sum_probs=89.6

Q ss_pred             ccCCccEEEeecCCCcccCccccCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCcC-CcccccCCCCcEE
Q 037969          150 ALKKCSAISLLNSSIHEVSEEFECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSL-PSSIGLLANLQTL  228 (300)
Q Consensus       150 ~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L  228 (300)
                      .+++++.|++++|.+..++....+++|+.|++++|.+  ...+..+ ..++.|++|+++++.+..+ +..+..+.++++|
T Consensus        53 ~l~~L~~L~L~~N~l~~l~~~~~l~~L~~L~Ls~N~l--~~~~~~~-~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L  129 (266)
T d1p9ag_          53 PYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQL--QSLPLLG-QTLPALTVLDVSFNRLTSLPLGALRGLGELQEL  129 (266)
T ss_dssp             TCTTCCEEECTTSCCCEEECCSCCTTCCEEECCSSCC--SSCCCCT-TTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEE
T ss_pred             ccccccccccccccccccccccccccccccccccccc--ccccccc-ccccccccccccccccceeeccccccccccccc
Confidence            3444455555555444444433445555555555544  3333322 4455555555555555443 2334455555555


Q ss_pred             EccCCCCCC--cccccCCCCcCEEEccCCCCCCCchh-hcCCCCCCEEeccCCCCccccchhhhcCCCCCCeeeC
Q 037969          229 CLDQSMLGD--IAIIGKLKNLEILSFLNSDIVRLPGE-LGQLTKLRLLDLTDCLQLKFIVPNVLSSFTRLEELYM  300 (300)
Q Consensus       229 ~l~~~~l~~--p~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l  300 (300)
                      ++++|.+..  +..+..+++|+.+++++|+++.+|.. ++.+++|++|++++|+ ++.+|.+ +..+++|+.|+|
T Consensus       130 ~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-L~~lp~~-~~~~~~L~~L~L  202 (266)
T d1p9ag_         130 YLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENS-LYTIPKG-FFGSHLLPFAFL  202 (266)
T ss_dssp             ECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSC-CCCCCTT-TTTTCCCSEEEC
T ss_pred             cccccccceeccccccccccchhcccccccccccCccccccccccceeecccCC-CcccChh-HCCCCCCCEEEe
Confidence            555555555  24456678888888888888877654 6788899999999888 7788887 778888888865

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=1.5e-16  Score=131.05  Aligned_cols=144  Identities=21%  Similarity=0.265  Sum_probs=83.0

Q ss_pred             CCccEEEeecCCCcccCcc-c-cCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCcCCcccccCCCCcEEE
Q 037969          152 KKCSAISLLNSSIHEVSEE-F-ECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPSSIGLLANLQTLC  229 (300)
Q Consensus       152 ~~l~~L~l~~~~~~~~~~~-~-~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~  229 (300)
                      ++++.|++++|.+..++.. + .+++|+.|++.+|.+  ..+|.  +..+++|++|++++|+++..|..+..+++|++|+
T Consensus        31 ~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l--~~l~~--~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~  106 (266)
T d1p9ag_          31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL--TKLQV--DGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLD  106 (266)
T ss_dssp             TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCC--CEEEC--CSCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEE
T ss_pred             cCCCEEECcCCcCCCcCHHHhhccccccccccccccc--ccccc--cccccccccccccccccccccccccccccccccc
Confidence            4566666666666555432 2 566666666666665  45543  2455666666666666666555566666666666


Q ss_pred             ccCCCCCC--cccccCCCCcCEEEccCCCCCCCchh-hcCCCCCCEEeccCCCCccccchhhhcCCCCCCeeeC
Q 037969          230 LDQSMLGD--IAIIGKLKNLEILSFLNSDIVRLPGE-LGQLTKLRLLDLTDCLQLKFIVPNVLSSFTRLEELYM  300 (300)
Q Consensus       230 l~~~~l~~--p~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l  300 (300)
                      ++++.+..  +..+..+.++++|++++|.++.+|.. +..+++|+.+++++|. +..+|.+.++.+++|++|+|
T Consensus       107 l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~-l~~~~~~~~~~l~~L~~L~L  179 (266)
T d1p9ag_         107 VSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN-LTELPAGLLNGLENLDTLLL  179 (266)
T ss_dssp             CCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC-CSCCCTTTTTTCTTCCEEEC
T ss_pred             ccccccceeeccccccccccccccccccccceeccccccccccchhccccccc-ccccCccccccccccceeec
Confidence            66665554  34455556666666666666655543 3445666666666665 55555544556666666554

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.69  E-value=4.1e-16  Score=122.80  Aligned_cols=143  Identities=22%  Similarity=0.307  Sum_probs=127.6

Q ss_pred             cccCCccEEEeecCCCcccCccccCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCcCCcccccCCCCcEE
Q 037969          149 DALKKCSAISLLNSSIHEVSEEFECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPSSIGLLANLQTL  228 (300)
Q Consensus       149 ~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L  228 (300)
                      ..+.+++.|++.++.+..++....+++|++|++++|.+  ..+++  ++++++|++|++++|.+..+|. ++.+++|++|
T Consensus        37 ~~l~~l~~L~l~~~~i~~l~~l~~l~nL~~L~Ls~N~l--~~~~~--l~~l~~L~~L~l~~n~~~~~~~-l~~l~~L~~L  111 (199)
T d2omxa2          37 TDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQL--TDITP--LKNLTKLVDILMNNNQIADITP-LANLTNLTGL  111 (199)
T ss_dssp             HHHTTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCC--CCCGG--GTTCTTCCEEECCSSCCCCCGG-GTTCTTCSEE
T ss_pred             HHhcCCCEEECCCCCCCCccccccCCCcCcCccccccc--cCccc--ccCCcccccccccccccccccc-cccccccccc
Confidence            45678999999999998887766899999999999998  77776  5899999999999999988874 8899999999


Q ss_pred             EccCCCCCCcccccCCCCcCEEEccCCCCCCCchhhcCCCCCCEEeccCCCCccccchhhhcCCCCCCeeeC
Q 037969          229 CLDQSMLGDIAIIGKLKNLEILSFLNSDIVRLPGELGQLTKLRLLDLTDCLQLKFIVPNVLSSFTRLEELYM  300 (300)
Q Consensus       229 ~l~~~~l~~p~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l  300 (300)
                      +++++.......+..+++|+.|++++|.+..+| .+..+++|+.|++.+|. +..+++  ++++++|++|++
T Consensus       112 ~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~l~~~~~L~~L~l~~n~-l~~l~~--l~~l~~L~~L~l  179 (199)
T d2omxa2         112 TLFNNQITDIDPLKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLNFSSNQ-VTDLKP--LANLTTLERLDI  179 (199)
T ss_dssp             ECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCG-GGTTCTTCSEEECCSSC-CCCCGG--GTTCTTCCEEEC
T ss_pred             cccccccccccccchhhhhHHhhhhhhhhcccc-ccccccccccccccccc-ccCCcc--ccCCCCCCEEEC
Confidence            999998877667889999999999999998876 58899999999999998 777875  899999999985

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.67  E-value=4.4e-16  Score=112.78  Aligned_cols=117  Identities=20%  Similarity=0.299  Sum_probs=95.5

Q ss_pred             cEEecccCccccccCchhHHhcCCcccEEEeeCCcCCcCCcccccCCCCcEEEccCCCCCCcccccCCCCcCEEEccCCC
Q 037969          177 EFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPSSIGLLANLQTLCLDQSMLGDIAIIGKLKNLEILSFLNSD  256 (300)
Q Consensus       177 ~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~p~~~~~l~~L~~L~l~~~~  256 (300)
                      |+|++++|.+  ..++.  +..+.+|++|++++|.++.+|+.++.+++|++|++++|.++.+++++.+++|++|++++|.
T Consensus         1 R~L~Ls~n~l--~~l~~--l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i~~l~~~~~l~~L~~L~l~~N~   76 (124)
T d1dcea3           1 RVLHLAHKDL--TVLCH--LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNR   76 (124)
T ss_dssp             SEEECTTSCC--SSCCC--GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSC
T ss_pred             CEEEcCCCCC--CCCcc--cccCCCCCEEECCCCccCcchhhhhhhhcccccccccccccccCccccccccCeEECCCCc
Confidence            5788888888  77765  4788899999999999999988888999999999999998886678899999999999998


Q ss_pred             CCCCch--hhcCCCCCCEEeccCCCCccc---cchhhhcCCCCCCee
Q 037969          257 IVRLPG--ELGQLTKLRLLDLTDCLQLKF---IVPNVLSSFTRLEEL  298 (300)
Q Consensus       257 l~~lp~--~~~~l~~L~~L~l~~~~~l~~---lp~~~l~~L~~L~~L  298 (300)
                      ++.+|.  .++.+++|++|++++|+ +..   .+...+..+++|+.|
T Consensus        77 i~~~~~~~~l~~~~~L~~L~l~~N~-i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          77 LQQSAAIQPLVSCPRLVLLNLQGNS-LCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             CCSSSTTGGGGGCTTCCEEECTTSG-GGGSSSCTTHHHHHCTTCSEE
T ss_pred             cCCCCCchhhcCCCCCCEEECCCCc-CCcCccHHHHHHHHCcCcceE
Confidence            887763  57888999999999987 433   344446667888765

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.66  E-value=2.2e-15  Score=120.96  Aligned_cols=158  Identities=19%  Similarity=0.274  Sum_probs=121.5

Q ss_pred             EEEeccccccCCCccccCCccEEEeecCCCcccCccccCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCc
Q 037969          135 FLVRNEVVWEWPDEDALKKCSAISLLNSSIHEVSEEFECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFS  214 (300)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~  214 (300)
                      ....+..+..++....+++++.|++++|.+..++....+++++.+.+.+|..  ..++.  +..++.|+++.++++....
T Consensus        46 L~l~~~~i~~l~~l~~l~~L~~L~ls~n~i~~~~~l~~l~~l~~l~~~~n~~--~~i~~--l~~l~~L~~l~l~~~~~~~  121 (227)
T d1h6ua2          46 LSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPL--KNVSA--IAGLQSIKTLDLTSTQITD  121 (227)
T ss_dssp             EECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCC--SCCGG--GTTCTTCCEEECTTSCCCC
T ss_pred             EECCCCCCCcchhHhcCCCCcEeecCCceeeccccccccccccccccccccc--ccccc--ccccccccccccccccccc
Confidence            3445555666665667778888888888776666656777888888877776  55554  3567777777777665432


Q ss_pred             C---------------------CcccccCCCCcEEEccCCCCCCcccccCCCCcCEEEccCCCCCCCchhhcCCCCCCEE
Q 037969          215 L---------------------PSSIGLLANLQTLCLDQSMLGDIAIIGKLKNLEILSFLNSDIVRLPGELGQLTKLRLL  273 (300)
Q Consensus       215 l---------------------p~~i~~l~~L~~L~l~~~~l~~p~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L  273 (300)
                      +                     ...+...++|++|++++|.+.....++.+++|+.|++++|.++.+|. ++++++|++|
T Consensus       122 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~l~~l~~L~~L~Ls~n~l~~l~~-l~~l~~L~~L  200 (227)
T d1h6ua2         122 VTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP-LASLPNLIEV  200 (227)
T ss_dssp             CGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEE
T ss_pred             cchhccccchhhhhchhhhhchhhhhccccccccccccccccccchhhcccccceecccCCCccCCChh-hcCCCCCCEE
Confidence            1                     12345778899999999998876668999999999999999998864 8999999999


Q ss_pred             eccCCCCccccchhhhcCCCCCCeeeC
Q 037969          274 DLTDCLQLKFIVPNVLSSFTRLEELYM  300 (300)
Q Consensus       274 ~l~~~~~l~~lp~~~l~~L~~L~~L~l  300 (300)
                      ++++|+ ++.+|+  ++++++|++|++
T Consensus       201 ~Ls~N~-lt~i~~--l~~l~~L~~L~l  224 (227)
T d1h6ua2         201 HLKNNQ-ISDVSP--LANTSNLFIVTL  224 (227)
T ss_dssp             ECTTSC-CCBCGG--GTTCTTCCEEEE
T ss_pred             ECcCCc-CCCCcc--cccCCCCCEEEe
Confidence            999997 888886  899999999875

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.65  E-value=1.5e-15  Score=120.55  Aligned_cols=142  Identities=30%  Similarity=0.374  Sum_probs=126.2

Q ss_pred             ccCCccEEEeecCCCcccCccccCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCcCCcccccCCCCcEEE
Q 037969          150 ALKKCSAISLLNSSIHEVSEEFECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPSSIGLLANLQTLC  229 (300)
Q Consensus       150 ~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~  229 (300)
                      .+.+++.|.+.++.+..++....+++|++|++++|.+  ..+++  ++.+++|++|++++|+++.+| .++.+++|+.|+
T Consensus        44 ~L~~L~~L~l~~~~i~~l~~l~~l~~L~~L~L~~n~i--~~l~~--~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~  118 (210)
T d1h6ta2          44 ELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKL--TDIKP--LANLKNLGWLFLDENKVKDLS-SLKDLKKLKSLS  118 (210)
T ss_dssp             HHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCC--CCCGG--GTTCTTCCEEECCSSCCCCGG-GGTTCTTCCEEE
T ss_pred             HhcCccEEECcCCCCCCchhHhhCCCCCEEeCCCccc--cCccc--cccCccccccccccccccccc-cccccccccccc
Confidence            4567899999999998887766899999999999999  77775  478999999999999999987 488999999999


Q ss_pred             ccCCCCCCcccccCCCCcCEEEccCCCCCCCchhhcCCCCCCEEeccCCCCccccchhhhcCCCCCCeeeC
Q 037969          230 LDQSMLGDIAIIGKLKNLEILSFLNSDIVRLPGELGQLTKLRLLDLTDCLQLKFIVPNVLSSFTRLEELYM  300 (300)
Q Consensus       230 l~~~~l~~p~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l  300 (300)
                      ++++.+..++.+..+++++.+++++|.++..+ .+.++++|+++++++|. +..+++  ++++++|++|++
T Consensus       119 l~~~~~~~~~~l~~l~~l~~l~~~~n~l~~~~-~~~~l~~L~~l~l~~n~-l~~i~~--l~~l~~L~~L~L  185 (210)
T d1h6ta2         119 LEHNGISDINGLVHLPQLESLYLGNNKITDIT-VLSRLTKLDTLSLEDNQ-ISDIVP--LAGLTKLQNLYL  185 (210)
T ss_dssp             CTTSCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSC-CCCCGG--GTTCTTCCEEEC
T ss_pred             cccccccccccccccccccccccccccccccc-ccccccccccccccccc-cccccc--ccCCCCCCEEEC
Confidence            99999888778899999999999999988765 57889999999999998 677775  889999999985

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=2.4e-16  Score=119.74  Aligned_cols=118  Identities=18%  Similarity=0.239  Sum_probs=55.1

Q ss_pred             CccEEEeecCCCcccCccc-cCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCcCCcc-cccCCCCcEEEc
Q 037969          153 KCSAISLLNSSIHEVSEEF-ECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPSS-IGLLANLQTLCL  230 (300)
Q Consensus       153 ~l~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~-i~~l~~L~~L~l  230 (300)
                      ++|.|++++|++..++... .+++|++|++++|.+  ..++.  +..+++|++|++++|.++.+|+. +..+++|++|++
T Consensus        19 ~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i--~~l~~--~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L   94 (162)
T d1a9na_          19 RDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEI--RKLDG--FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELIL   94 (162)
T ss_dssp             SCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCC--CEECC--CCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEEC
T ss_pred             cCcEEECCCCCCCccCccccccccCCEEECCCCCC--CccCC--cccCcchhhhhcccccccCCCcccccccccccccee
Confidence            4455555555554444432 444555555555554  44432  24445555555555555544332 234455555555


Q ss_pred             cCCCCCC-c--ccccCCCCcCEEEccCCCCCCCch----hhcCCCCCCEEe
Q 037969          231 DQSMLGD-I--AIIGKLKNLEILSFLNSDIVRLPG----ELGQLTKLRLLD  274 (300)
Q Consensus       231 ~~~~l~~-p--~~~~~l~~L~~L~l~~~~l~~lp~----~~~~l~~L~~L~  274 (300)
                      ++|.+.. +  ..+..+++|++|++++|.++.+|.    .+..+++|++|+
T Consensus        95 ~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          95 TNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             CSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             ccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence            5555443 1  234444555555555554444432    234444555444

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.61  E-value=1.3e-14  Score=125.22  Aligned_cols=154  Identities=22%  Similarity=0.332  Sum_probs=110.5

Q ss_pred             ccccccCCCccccCCccEEEeecCCCcccCccccCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCcCC--
Q 037969          139 NEVVWEWPDEDALKKCSAISLLNSSIHEVSEEFECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLP--  216 (300)
Q Consensus       139 ~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp--  216 (300)
                      +..+..++.....++++.+++.++.+..++....+++|+.+++.+|.+  ..+++  +..+++|++|+++++.++.++  
T Consensus       206 ~n~i~~~~~~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l--~~~~~--~~~~~~L~~L~l~~~~l~~~~~~  281 (384)
T d2omza2         206 NNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQI--SNLAP--LSGLTKLTELKLGANQISNISPL  281 (384)
T ss_dssp             SSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCC--CCCGG--GTTCTTCSEEECCSSCCCCCGGG
T ss_pred             CCccCCCCcccccCCCCEEECCCCCCCCcchhhcccccchhccccCcc--CCCCc--ccccccCCEeeccCcccCCCCcc
Confidence            333444443444556666666666665555544666666666666665  44443  355666666666655544322  


Q ss_pred             -------------------cccccCCCCcEEEccCCCCCCcccccCCCCcCEEEccCCCCCCCchhhcCCCCCCEEeccC
Q 037969          217 -------------------SSIGLLANLQTLCLDQSMLGDIAIIGKLKNLEILSFLNSDIVRLPGELGQLTKLRLLDLTD  277 (300)
Q Consensus       217 -------------------~~i~~l~~L~~L~l~~~~l~~p~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~  277 (300)
                                         ..+..+.++++|++++|.+.....+..+++|+.|++++|.++.+| .++++++|++|++++
T Consensus       282 ~~~~~l~~l~~~~n~l~~~~~~~~~~~l~~L~ls~n~l~~l~~l~~l~~L~~L~L~~n~l~~l~-~l~~l~~L~~L~l~~  360 (384)
T d2omza2         282 AGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFANNKVSDVS-SLANLTNINWLSAGH  360 (384)
T ss_dssp             TTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECCSSCCCCCG-GGGGCTTCCEEECCS
T ss_pred             ccccccccccccccccccccccchhcccCeEECCCCCCCCCcccccCCCCCEEECCCCCCCCCh-hHcCCCCCCEEECCC
Confidence                               235677889999999999888555889999999999999999887 689999999999999


Q ss_pred             CCCccccchhhhcCCCCCCeeeC
Q 037969          278 CLQLKFIVPNVLSSFTRLEELYM  300 (300)
Q Consensus       278 ~~~l~~lp~~~l~~L~~L~~L~l  300 (300)
                      |+ +..+++  ++++++|++|+|
T Consensus       361 N~-l~~l~~--l~~l~~L~~L~L  380 (384)
T d2omza2         361 NQ-ISDLTP--LANLTRITQLGL  380 (384)
T ss_dssp             SC-CCBCGG--GTTCTTCSEEEC
T ss_pred             Cc-CCCChh--hccCCCCCEeeC
Confidence            98 778876  889999999986

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.59  E-value=1.5e-14  Score=121.17  Aligned_cols=69  Identities=22%  Similarity=0.306  Sum_probs=35.0

Q ss_pred             cccCCCccccCCccEEEeecCCCcccCcc-c-cCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCC
Q 037969          142 VWEWPDEDALKKCSAISLLNSSIHEVSEE-F-ECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLF  213 (300)
Q Consensus       142 ~~~~~~~~~~~~l~~L~l~~~~~~~~~~~-~-~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~  213 (300)
                      +..+|. ...+++++|++++|.+..+|+. + .+++|++|++.+|.+  ..+++..|.+++.|++|++++|+++
T Consensus        22 L~~lP~-~l~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~--~~i~~~~f~~l~~L~~L~l~~n~l~   92 (305)
T d1xkua_          22 LEKVPK-DLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKI--SKISPGAFAPLVKLERLYLSKNQLK   92 (305)
T ss_dssp             CCSCCC-SCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCC--CCBCTTTTTTCTTCCEEECCSSCCS
T ss_pred             CCccCC-CCCCCCCEEECcCCcCCCcChhHhhccccccccccccccc--cccchhhhhCCCccCEecccCCccC
Confidence            444443 2234555666666655555532 2 555555555555555  4444333455555555555554433

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.58  E-value=2.5e-15  Score=126.56  Aligned_cols=147  Identities=22%  Similarity=0.257  Sum_probs=75.8

Q ss_pred             cccCCccEEEeecCCCcccC-ccc-cCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCc-CCcccccCC--
Q 037969          149 DALKKCSAISLLNSSIHEVS-EEF-ECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFS-LPSSIGLLA--  223 (300)
Q Consensus       149 ~~~~~l~~L~l~~~~~~~~~-~~~-~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~-lp~~i~~l~--  223 (300)
                      ..++++++|++++|.+..++ ... .+.+|+.+++.+|.. ...+|..+ ..++.++++++++|.++. +|..++.+.  
T Consensus        98 ~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~-~~~~p~~l-~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l  175 (313)
T d1ogqa_          98 AKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNAL-SGTLPPSI-SSLPNLVGITFDGNRISGAIPDSYGSFSKL  175 (313)
T ss_dssp             GGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEE-ESCCCGGG-GGCTTCCEEECCSSCCEEECCGGGGCCCTT
T ss_pred             ccccccchhhhccccccccccccccchhhhcccccccccc-cccCchhh-ccCcccceeecccccccccccccccccccc
Confidence            34445555555555443222 212 444555555555444 13444444 666677777776665542 444433332  


Q ss_pred             ----------------------------------------------CCcEEEccCCCCCC-cccccCCCCcCEEEccCCC
Q 037969          224 ----------------------------------------------NLQTLCLDQSMLGD-IAIIGKLKNLEILSFLNSD  256 (300)
Q Consensus       224 ----------------------------------------------~L~~L~l~~~~l~~-p~~~~~l~~L~~L~l~~~~  256 (300)
                                                                    +++.++++++.+.. ++.++.+++|+.|++++|+
T Consensus       176 ~~~l~~~~n~l~~~~~~~~~~l~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~L~~L~Ls~N~  255 (313)
T d1ogqa_         176 FTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNR  255 (313)
T ss_dssp             CCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSC
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccCccCe
Confidence                                                          33333333333333 4445556666666666666


Q ss_pred             CC-CCchhhcCCCCCCEEeccCCCCccccchhhhcCCCCCCeee
Q 037969          257 IV-RLPGELGQLTKLRLLDLTDCLQLKFIVPNVLSSFTRLEELY  299 (300)
Q Consensus       257 l~-~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~  299 (300)
                      ++ .+|.+++++++|++|++++|+..+.+|.  ++++++|+.++
T Consensus       256 l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~--~~~L~~L~~l~  297 (313)
T d1ogqa_         256 IYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ--GGNLQRFDVSA  297 (313)
T ss_dssp             CEECCCGGGGGCTTCCEEECCSSEEEEECCC--STTGGGSCGGG
T ss_pred             ecccCChHHhCCCCCCEEECcCCcccccCCC--cccCCCCCHHH
Confidence            65 5666666666666666666663345554  45555555543

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.57  E-value=9.9e-15  Score=105.52  Aligned_cols=115  Identities=16%  Similarity=0.231  Sum_probs=99.1

Q ss_pred             cEEEeecCCCcccCccccCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCcCCcccccCCCCcEEEccCCC
Q 037969          155 SAISLLNSSIHEVSEEFECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPSSIGLLANLQTLCLDQSM  234 (300)
Q Consensus       155 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~  234 (300)
                      |.|++++|.+..++....+++|+.|++++|.+  ..+|+.+ +.+++|++|++++|.++.+|. ++.+++|++|++++|.
T Consensus         1 R~L~Ls~n~l~~l~~l~~l~~L~~L~ls~N~l--~~lp~~~-~~l~~L~~L~l~~N~i~~l~~-~~~l~~L~~L~l~~N~   76 (124)
T d1dcea3           1 RVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRL--RALPPAL-AALRCLEVLQASDNALENVDG-VANLPRLQELLLCNNR   76 (124)
T ss_dssp             SEEECTTSCCSSCCCGGGGTTCCEEECCSSCC--CCCCGGG-GGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSC
T ss_pred             CEEEcCCCCCCCCcccccCCCCCEEECCCCcc--Ccchhhh-hhhhcccccccccccccccCc-cccccccCeEECCCCc
Confidence            57999999999888766999999999999999  8998875 889999999999999999974 8999999999999999


Q ss_pred             CCC-c--ccccCCCCcCEEEccCCCCCCCc---hh-hcCCCCCCEE
Q 037969          235 LGD-I--AIIGKLKNLEILSFLNSDIVRLP---GE-LGQLTKLRLL  273 (300)
Q Consensus       235 l~~-p--~~~~~l~~L~~L~l~~~~l~~lp---~~-~~~l~~L~~L  273 (300)
                      +.. +  ..++.+++|++|++++|.++..+   .. +..+++|+.|
T Consensus        77 i~~~~~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          77 LQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             CCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             cCCCCCchhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence            886 3  57889999999999999887543   22 3446777765

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=4e-15  Score=112.92  Aligned_cols=129  Identities=17%  Similarity=0.160  Sum_probs=110.5

Q ss_pred             ccCccccCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCcCCcccccCCCCcEEEccCCCCCC-ccc-ccC
Q 037969          166 EVSEEFECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPSSIGLLANLQTLCLDQSMLGD-IAI-IGK  243 (300)
Q Consensus       166 ~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~-p~~-~~~  243 (300)
                      ..|...++.+++.|++++|.+  ..+++ ++..+++|++|++++|.++.++ .+..+++|++|++++|.+.. ++. +..
T Consensus        10 ~~~~~~n~~~lr~L~L~~n~I--~~i~~-~~~~l~~L~~L~Ls~N~i~~l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~   85 (162)
T d1a9na_          10 QAAQYTNAVRDRELDLRGYKI--PVIEN-LGATLDQFDAIDFSDNEIRKLD-GFPLLRRLKTLLVNNNRICRIGEGLDQA   85 (162)
T ss_dssp             TSCEEECTTSCEEEECTTSCC--CSCCC-GGGGTTCCSEEECCSSCCCEEC-CCCCCSSCCEEECCSSCCCEECSCHHHH
T ss_pred             hhHhccCcCcCcEEECCCCCC--CccCc-cccccccCCEEECCCCCCCccC-CcccCcchhhhhcccccccCCCcccccc
Confidence            445556788999999999999  88875 4578999999999999999985 58899999999999999988 544 567


Q ss_pred             CCCcCEEEccCCCCCCCch--hhcCCCCCCEEeccCCCCccccch---hhhcCCCCCCeee
Q 037969          244 LKNLEILSFLNSDIVRLPG--ELGQLTKLRLLDLTDCLQLKFIVP---NVLSSFTRLEELY  299 (300)
Q Consensus       244 l~~L~~L~l~~~~l~~lp~--~~~~l~~L~~L~l~~~~~l~~lp~---~~l~~L~~L~~L~  299 (300)
                      +++|++|++++|.++.++.  .+..+++|++|++++|+ +...|.   .++..+++|+.|+
T Consensus        86 l~~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~-i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          86 LPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             CTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEET
T ss_pred             ccccccceeccccccccccccccccccccchhhcCCCc-cccccchHHHHHHHCCCcCeeC
Confidence            9999999999999998874  58899999999999998 676663   3478899999886

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=8.3e-14  Score=115.45  Aligned_cols=162  Identities=25%  Similarity=0.330  Sum_probs=113.8

Q ss_pred             EeccccccCCCccccCCccEEEeecCCCcccCcc-c-cCCCccEEecccCccc-----------------------cccC
Q 037969          137 VRNEVVWEWPDEDALKKCSAISLLNSSIHEVSEE-F-ECLQLEFLHISQNTFV-----------------------EVNI  191 (300)
Q Consensus       137 ~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~-~-~~~~L~~L~l~~~~~~-----------------------~~~l  191 (300)
                      ..+.++..+|. ...++++.|++++|.++.+|.. + ++++|+.|++++|.+.                       -..+
T Consensus        18 c~~~~L~~iP~-~ip~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l   96 (284)
T d1ozna_          18 CPQQGLQAVPV-GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSV   96 (284)
T ss_dssp             CCSSCCSSCCT-TCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCC
T ss_pred             cCCCCCCccCC-CCCCCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccc
Confidence            34444666665 3345677888888888777653 2 7778888888776651                       0233


Q ss_pred             chhHHhcCCcccEEEeeCCcCCcC-CcccccCCCCcEEEccCCCCCC-c-ccccCCCCcCEEEccCCCCCCCch-hhcCC
Q 037969          192 PDNIFKGMKTLRVIDLTRMRLFSL-PSSIGLLANLQTLCLDQSMLGD-I-AIIGKLKNLEILSFLNSDIVRLPG-ELGQL  267 (300)
Q Consensus       192 ~~~~~~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~~~l~~-p-~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l  267 (300)
                      +...|.++++|++|+++++.+..+ +..++...+|+.+++++|.++. | ..+..+++|+.|++++|+++.+|. .+..+
T Consensus        97 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l  176 (284)
T d1ozna_          97 DPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGL  176 (284)
T ss_dssp             CTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTC
T ss_pred             cchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccc
Confidence            344457778888888888887775 4456677788888888888877 3 556777888888888888887654 46778


Q ss_pred             CCCCEEeccCCCCccccchhhhcCCCCCCeeeC
Q 037969          268 TKLRLLDLTDCLQLKFIVPNVLSSFTRLEELYM  300 (300)
Q Consensus       268 ~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l  300 (300)
                      ++|+.+++.+|. +..+++..+..+++|++|++
T Consensus       177 ~~L~~l~l~~N~-l~~i~~~~f~~l~~L~~L~l  208 (284)
T d1ozna_         177 HSLDRLLLHQNR-VAHVHPHAFRDLGRLMTLYL  208 (284)
T ss_dssp             TTCCEEECCSSC-CCEECTTTTTTCTTCCEEEC
T ss_pred             cccchhhhhhcc-ccccChhHhhhhhhcccccc
Confidence            888888888888 55554445888888888864

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.53  E-value=3.5e-14  Score=110.88  Aligned_cols=105  Identities=18%  Similarity=0.249  Sum_probs=49.1

Q ss_pred             CCccEEEeecCCCcc-cCcc-c-cCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCcCC-cccccCCCCcE
Q 037969          152 KKCSAISLLNSSIHE-VSEE-F-ECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLP-SSIGLLANLQT  227 (300)
Q Consensus       152 ~~l~~L~l~~~~~~~-~~~~-~-~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp-~~i~~l~~L~~  227 (300)
                      +++++|++++|.+.. ++.. + .+++|+.|++.+|.+  ..++...|..++.|++|++++|+++.+| ..+.++++|++
T Consensus        29 ~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i--~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~  106 (192)
T d1w8aa_          29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQL--TGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKT  106 (192)
T ss_dssp             TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCC--CCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCE
T ss_pred             CCCCEEEeCCCCCcccccccccCCCceEeeeecccccc--ccccccccccccccceeeeccccccccCHHHHhCCCcccc
Confidence            345555555555532 2221 1 445555555555554  4444444444555555555555555542 23444555555


Q ss_pred             EEccCCCCCC--cccccCCCCcCEEEccCCCCC
Q 037969          228 LCLDQSMLGD--IAIIGKLKNLEILSFLNSDIV  258 (300)
Q Consensus       228 L~l~~~~l~~--p~~~~~l~~L~~L~l~~~~l~  258 (300)
                      |+|++|.++.  +..+..+++|++|++++|.+.
T Consensus       107 L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~  139 (192)
T d1w8aa_         107 LNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             EECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             cccCCccccccCHHHhcCCcccccccccccccc
Confidence            5555555544  233444555555555554443

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.53  E-value=1.5e-13  Score=118.35  Aligned_cols=145  Identities=21%  Similarity=0.281  Sum_probs=121.2

Q ss_pred             CccccCCccEEEeecCCCcccCccccCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCcCCcccccCCCCc
Q 037969          147 DEDALKKCSAISLLNSSIHEVSEEFECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPSSIGLLANLQ  226 (300)
Q Consensus       147 ~~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~  226 (300)
                      ....+++++.+.+..+.+..++....+++|+.|.+.+|.+  ..++.  +..+++|+.|++++|.++.+++ ++.+++|+
T Consensus       192 ~~~~l~~~~~l~l~~n~i~~~~~~~~~~~L~~L~l~~n~l--~~~~~--l~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~  266 (384)
T d2omza2         192 VLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQL--KDIGT--LASLTNLTDLDLANNQISNLAP-LSGLTKLT  266 (384)
T ss_dssp             GGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCC--CCCGG--GGGCTTCSEEECCSSCCCCCGG-GTTCTTCS
T ss_pred             ccccccccceeeccCCccCCCCcccccCCCCEEECCCCCC--CCcch--hhcccccchhccccCccCCCCc-ccccccCC
Confidence            3466788999999999998777767889999999999998  77664  4789999999999999998865 77889999


Q ss_pred             EEEccCCCCCC----------------------cccccCCCCcCEEEccCCCCCCCchhhcCCCCCCEEeccCCCCcccc
Q 037969          227 TLCLDQSMLGD----------------------IAIIGKLKNLEILSFLNSDIVRLPGELGQLTKLRLLDLTDCLQLKFI  284 (300)
Q Consensus       227 ~L~l~~~~l~~----------------------p~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~l  284 (300)
                      +|+++++.+..                      +..+..+++++.|++++|+++.++ .+..+++|++|++++|+ ++.+
T Consensus       267 ~L~l~~~~l~~~~~~~~~~~l~~l~~~~n~l~~~~~~~~~~~l~~L~ls~n~l~~l~-~l~~l~~L~~L~L~~n~-l~~l  344 (384)
T d2omza2         267 ELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDIS-PVSSLTKLQRLFFANNK-VSDV  344 (384)
T ss_dssp             EEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSCCG-GGGGCTTCCEEECCSSC-CCCC
T ss_pred             EeeccCcccCCCCccccccccccccccccccccccccchhcccCeEECCCCCCCCCc-ccccCCCCCEEECCCCC-CCCC
Confidence            99998886544                      233567778889999999888886 48899999999999997 7777


Q ss_pred             chhhhcCCCCCCeeeC
Q 037969          285 VPNVLSSFTRLEELYM  300 (300)
Q Consensus       285 p~~~l~~L~~L~~L~l  300 (300)
                      |.  ++.+++|++|++
T Consensus       345 ~~--l~~l~~L~~L~l  358 (384)
T d2omza2         345 SS--LANLTNINWLSA  358 (384)
T ss_dssp             GG--GGGCTTCCEEEC
T ss_pred             hh--HcCCCCCCEEEC
Confidence            74  889999999985

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.52  E-value=1e-13  Score=111.04  Aligned_cols=143  Identities=24%  Similarity=0.334  Sum_probs=120.0

Q ss_pred             cccCCccEEEeecCCCcccCccccCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCcCCcccccCCCCcEE
Q 037969          149 DALKKCSAISLLNSSIHEVSEEFECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPSSIGLLANLQTL  228 (300)
Q Consensus       149 ~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L  228 (300)
                      ..+.+++.|++.++.+..++....+++|+.|++++|.+  ..+++  +..++++++++++++.++.++ .+..+++|+++
T Consensus        38 ~~l~~L~~L~l~~~~i~~l~~l~~l~~L~~L~ls~n~i--~~~~~--l~~l~~l~~l~~~~n~~~~i~-~l~~l~~L~~l  112 (227)
T d1h6ua2          38 ADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQI--TDLAP--LKNLTKITELELSGNPLKNVS-AIAGLQSIKTL  112 (227)
T ss_dssp             HHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCC--CCCGG--GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEE
T ss_pred             HHcCCcCEEECCCCCCCcchhHhcCCCCcEeecCCcee--ecccc--ccccccccccccccccccccc-ccccccccccc
Confidence            55678999999999998887666999999999999998  66665  588999999999999998876 47889999999


Q ss_pred             EccCCCCCC----------------------cccccCCCCcCEEEccCCCCCCCchhhcCCCCCCEEeccCCCCccccch
Q 037969          229 CLDQSMLGD----------------------IAIIGKLKNLEILSFLNSDIVRLPGELGQLTKLRLLDLTDCLQLKFIVP  286 (300)
Q Consensus       229 ~l~~~~l~~----------------------p~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~  286 (300)
                      .++++....                      ...+..+++|++|++.+|.+...+ .++++++|+.|++++|+ ++.+|.
T Consensus       113 ~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~Ls~n~-l~~l~~  190 (227)
T d1h6ua2         113 DLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLT-PLANLSKLTTLKADDNK-ISDISP  190 (227)
T ss_dssp             ECTTSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSC-CCCCGG
T ss_pred             ccccccccccchhccccchhhhhchhhhhchhhhhccccccccccccccccccch-hhcccccceecccCCCc-cCCChh
Confidence            998885332                      133467778999999988887665 48899999999999997 788876


Q ss_pred             hhhcCCCCCCeeeC
Q 037969          287 NVLSSFTRLEELYM  300 (300)
Q Consensus       287 ~~l~~L~~L~~L~l  300 (300)
                        ++++++|++|++
T Consensus       191 --l~~l~~L~~L~L  202 (227)
T d1h6ua2         191 --LASLPNLIEVHL  202 (227)
T ss_dssp             --GGGCTTCCEEEC
T ss_pred             --hcCCCCCCEEEC
Confidence              889999999975

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=1.6e-13  Score=113.62  Aligned_cols=125  Identities=22%  Similarity=0.306  Sum_probs=68.4

Q ss_pred             cCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCcCC-cccccCCCCcEEEccCCCCCC--cccccCCCCcC
Q 037969          172 ECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLP-SSIGLLANLQTLCLDQSMLGD--IAIIGKLKNLE  248 (300)
Q Consensus       172 ~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp-~~i~~l~~L~~L~l~~~~l~~--p~~~~~l~~L~  248 (300)
                      ++++|++|++.+|..  ..++...+....+|+.+++++|.++.+| ..+..+.+|+.|++++|.+..  +..+..+++|+
T Consensus       103 ~l~~L~~L~l~~n~~--~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~  180 (284)
T d1ozna_         103 GLGRLHTLHLDRCGL--QELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLD  180 (284)
T ss_dssp             TCTTCCEEECTTSCC--CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred             ccccCCEEecCCccc--ccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccc
Confidence            455566666665555  4444444455555666666666665553 334455556666666665554  34455555666


Q ss_pred             EEEccCCCCCCC-chhhcCCCCCCEEeccCCCCccccchhhhcCCCCCCeee
Q 037969          249 ILSFLNSDIVRL-PGELGQLTKLRLLDLTDCLQLKFIVPNVLSSFTRLEELY  299 (300)
Q Consensus       249 ~L~l~~~~l~~l-p~~~~~l~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~  299 (300)
                      ++++.+|.++.+ |..+..+++|++|++++|. +..+|...++.+++|++|+
T Consensus       181 ~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~L~~L~  231 (284)
T d1ozna_         181 RLLLHQNRVAHVHPHAFRDLGRLMTLYLFANN-LSALPTEALAPLRALQYLR  231 (284)
T ss_dssp             EEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CSCCCHHHHTTCTTCCEEE
T ss_pred             hhhhhhccccccChhHhhhhhhcccccccccc-cccccccccccccccCEEE
Confidence            666666555533 4445555666666666655 4444444455555565554

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.51  E-value=5.1e-16  Score=121.96  Aligned_cols=141  Identities=23%  Similarity=0.293  Sum_probs=105.2

Q ss_pred             ccEEEeecC--CCcccCccc-cCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCcCCcccccCCCCcEEEc
Q 037969          154 CSAISLLNS--SIHEVSEEF-ECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPSSIGLLANLQTLCL  230 (300)
Q Consensus       154 l~~L~l~~~--~~~~~~~~~-~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l  230 (300)
                      .+.+.+.+.  .+..++..+ .+++|+.|++++|.+  ..++.  +..+++|++|++++|.++.+|.....+++|++|++
T Consensus        25 ~~~~~l~~~~~~i~~l~~sl~~L~~L~~L~Ls~n~I--~~i~~--l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l  100 (198)
T d1m9la_          25 AEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNI--EKISS--LSGMENLRILSLGRNLIKKIENLDAVADTLEELWI  100 (198)
T ss_dssp             CSCEECCBCCTTCCCCHHHHHHTTTCCEEECSEEEE--SCCCC--HHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEEC
T ss_pred             cceeeeecccCchhhhhhHHhcccccceeECcccCC--CCccc--ccCCccccChhhccccccccccccccccccccccc
Confidence            344555443  234555444 788899999998888  77764  47888999999999988888766666678899999


Q ss_pred             cCCCCCCcccccCCCCcCEEEccCCCCCCCch--hhcCCCCCCEEeccCCCCccccchh----------hhcCCCCCCee
Q 037969          231 DQSMLGDIAIIGKLKNLEILSFLNSDIVRLPG--ELGQLTKLRLLDLTDCLQLKFIVPN----------VLSSFTRLEEL  298 (300)
Q Consensus       231 ~~~~l~~p~~~~~l~~L~~L~l~~~~l~~lp~--~~~~l~~L~~L~l~~~~~l~~lp~~----------~l~~L~~L~~L  298 (300)
                      ++|.+..++.+..+++|++|++++|.++.++.  .+..+++|+.|++++|+ +...+..          ++..+++|+.|
T Consensus       101 ~~N~i~~l~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~-l~~~~~~~~~~~~~r~~vi~~lp~L~~L  179 (198)
T d1m9la_         101 SYNQIASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNP-LYNDYKENNATSEYRIEVVKRLPNLKKL  179 (198)
T ss_dssp             SEEECCCHHHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSH-HHHHHCTTTTHHHHHHHHHHHCSSCCEE
T ss_pred             ccccccccccccccccccccccccchhccccccccccCCCccceeecCCCc-cccCcccccchhhHHHHHHHHCCCcCEe
Confidence            98888886668888889999999888887763  57888899999998887 3332211          25678888877


Q ss_pred             e
Q 037969          299 Y  299 (300)
Q Consensus       299 ~  299 (300)
                      +
T Consensus       180 D  180 (198)
T d1m9la_         180 D  180 (198)
T ss_dssp             S
T ss_pred             C
Confidence            5

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.50  E-value=6.2e-14  Score=109.42  Aligned_cols=123  Identities=18%  Similarity=0.297  Sum_probs=106.7

Q ss_pred             cEEEeecCCCcccCccccCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCcC-CcccccCCCCcEEEccCC
Q 037969          155 SAISLLNSSIHEVSEEFECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSL-PSSIGLLANLQTLCLDQS  233 (300)
Q Consensus       155 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~~  233 (300)
                      +.++.+++.+..+|..+. ++++.|++++|.+ ...++...|..+++|+.|++++|.+..+ +..+..+++|++|++++|
T Consensus        11 ~~v~Cs~~~L~~iP~~lp-~~l~~L~Ls~N~i-~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N   88 (192)
T d1w8aa_          11 TTVDCTGRGLKEIPRDIP-LHTTELLLNDNEL-GRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN   88 (192)
T ss_dssp             TEEECTTSCCSSCCSCCC-TTCSEEECCSCCC-CSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred             CEEEEeCCCcCccCCCCC-CCCCEEEeCCCCC-cccccccccCCCceEeeeeccccccccccccccccccccceeeeccc
Confidence            467888888888887653 6899999999999 2346666778999999999999999986 567888999999999999


Q ss_pred             CCCC--cccccCCCCcCEEEccCCCCCCCchh-hcCCCCCCEEeccCCC
Q 037969          234 MLGD--IAIIGKLKNLEILSFLNSDIVRLPGE-LGQLTKLRLLDLTDCL  279 (300)
Q Consensus       234 ~l~~--p~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~  279 (300)
                      .+..  +..+..+++|++|+|++|.++.+|+. +..+++|++|++++|+
T Consensus        89 ~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~  137 (192)
T d1w8aa_          89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNP  137 (192)
T ss_dssp             CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCC
T ss_pred             cccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccc
Confidence            9998  46689999999999999999988765 7889999999999998

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.50  E-value=8.8e-14  Score=116.88  Aligned_cols=150  Identities=20%  Similarity=0.248  Sum_probs=116.9

Q ss_pred             ccccCCccEEEeec-CCC-cccCccc-cCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCc-CCcccccCC
Q 037969          148 EDALKKCSAISLLN-SSI-HEVSEEF-ECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFS-LPSSIGLLA  223 (300)
Q Consensus       148 ~~~~~~l~~L~l~~-~~~-~~~~~~~-~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~-lp~~i~~l~  223 (300)
                      ...+++++.|++++ |.+ +.+|..+ ++++|++|++++|.+  ..++...+..+..|+++++++|.+.. +|..++.++
T Consensus        72 l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l--~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~  149 (313)
T d1ogqa_          72 LANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNV--SGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLP  149 (313)
T ss_dssp             GGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECC--EEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCT
T ss_pred             HhcCccccccccccccccccccccccccccccchhhhccccc--cccccccccchhhhcccccccccccccCchhhccCc
Confidence            36788899999986 666 5788766 889999999999888  55555556888899999999887765 688999999


Q ss_pred             CCcEEEccCCCCCC--cccc------------------------------------------------cCCCCcCEEEcc
Q 037969          224 NLQTLCLDQSMLGD--IAII------------------------------------------------GKLKNLEILSFL  253 (300)
Q Consensus       224 ~L~~L~l~~~~l~~--p~~~------------------------------------------------~~l~~L~~L~l~  253 (300)
                      .|+++++++|.+..  |..+                                                +.+++|+.+++.
T Consensus       150 ~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~  229 (313)
T d1ogqa_         150 NLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLA  229 (313)
T ss_dssp             TCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECC
T ss_pred             ccceeecccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            99999998885432  3222                                                344556666666


Q ss_pred             CCCCCCCchhhcCCCCCCEEeccCCCCccccchhhhcCCCCCCeeeC
Q 037969          254 NSDIVRLPGELGQLTKLRLLDLTDCLQLKFIVPNVLSSFTRLEELYM  300 (300)
Q Consensus       254 ~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l  300 (300)
                      ++.+...|..++.+++|+.|++++|+..+.+|.. ++++++|++|+|
T Consensus       230 ~~~l~~~~~~~~~~~~L~~L~Ls~N~l~g~iP~~-l~~L~~L~~L~L  275 (313)
T d1ogqa_         230 KNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQG-LTQLKFLHSLNV  275 (313)
T ss_dssp             SSEECCBGGGCCCCTTCCEEECCSSCCEECCCGG-GGGCTTCCEEEC
T ss_pred             cccccccccccccccccccccCccCeecccCChH-HhCCCCCCEEEC
Confidence            6666655667888899999999999966689987 899999999986

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.41  E-value=2.3e-12  Score=107.57  Aligned_cols=148  Identities=16%  Similarity=0.204  Sum_probs=117.3

Q ss_pred             cccCCccEEEeecCCCcccCccccCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCcC-CcccccCCCCcE
Q 037969          149 DALKKCSAISLLNSSIHEVSEEFECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSL-PSSIGLLANLQT  227 (300)
Q Consensus       149 ~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L~~  227 (300)
                      ..+++++.+.+.++.+..+|... +++|+.|++.+|..  ...+...|.+++.+++|++++|.++.+ |..+..+++|++
T Consensus       147 ~~l~~L~~l~l~~n~l~~l~~~~-~~~L~~L~l~~n~~--~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~  223 (305)
T d1xkua_         147 QGMKKLSYIRIADTNITTIPQGL-PPSLTELHLDGNKI--TKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRE  223 (305)
T ss_dssp             GGCTTCCEEECCSSCCCSCCSSC-CTTCSEEECTTSCC--CEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCE
T ss_pred             ccccccCccccccCCccccCccc-CCccCEEECCCCcC--CCCChhHhhcccccccccccccccccccccccccccccee
Confidence            45677889999999887776543 68899999999887  445555568899999999999999986 567888999999


Q ss_pred             EEccCCCCCC-cccccCCCCcCEEEccCCCCCCCchh-------hcCCCCCCEEeccCCCC-ccccchhhhcCCCCCCee
Q 037969          228 LCLDQSMLGD-IAIIGKLKNLEILSFLNSDIVRLPGE-------LGQLTKLRLLDLTDCLQ-LKFIVPNVLSSFTRLEEL  298 (300)
Q Consensus       228 L~l~~~~l~~-p~~~~~l~~L~~L~l~~~~l~~lp~~-------~~~l~~L~~L~l~~~~~-l~~lp~~~l~~L~~L~~L  298 (300)
                      |++++|.++. |..+..+++|++|++++|+++.++..       ...+.+|+.|++++|+. ...+++..+..+.....+
T Consensus       224 L~L~~N~L~~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~~~~~~~~~f~~~~~~~~~  303 (305)
T d1xkua_         224 LHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAV  303 (305)
T ss_dssp             EECCSSCCSSCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGE
T ss_pred             eecccccccccccccccccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcCccCcCCHhHhcccccCccc
Confidence            9999999988 88899999999999999999887653       34567899999999972 235666656665555444


Q ss_pred             e
Q 037969          299 Y  299 (300)
Q Consensus       299 ~  299 (300)
                      +
T Consensus       304 ~  304 (305)
T d1xkua_         304 Q  304 (305)
T ss_dssp             E
T ss_pred             c
Confidence            3

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=3.1e-11  Score=97.06  Aligned_cols=74  Identities=15%  Similarity=0.163  Sum_probs=40.9

Q ss_pred             CcEEEccCCCCCC-cccccCCCCcCEEE-ccCCCCCCCchh-hcCCCCCCEEeccCCCCccccchhhhcCCCCCCeee
Q 037969          225 LQTLCLDQSMLGD-IAIIGKLKNLEILS-FLNSDIVRLPGE-LGQLTKLRLLDLTDCLQLKFIVPNVLSSFTRLEELY  299 (300)
Q Consensus       225 L~~L~l~~~~l~~-p~~~~~l~~L~~L~-l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~  299 (300)
                      ++.|+++++.+.. +.......+++.+. +.+|.++++|.. +.++++|+.|++++|+ ++.+|...+.++++|+.++
T Consensus       155 l~~L~l~~n~l~~i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~-l~~l~~~~~~~l~~L~~l~  231 (242)
T d1xwdc1         155 SVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTR-IHSLPSYGLENLKKLRARS  231 (242)
T ss_dssp             CEEEECCSSCCCEECTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSC-CCCCCSSSCTTCCEEESSS
T ss_pred             ceeeecccccccccccccccchhhhccccccccccccccHHHhcCCCCCCEEECCCCc-CCccCHHHHcCCcccccCc
Confidence            3334444444443 33333344444443 344466666654 5667777777777777 6677765556666655543

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.28  E-value=6.2e-14  Score=109.84  Aligned_cols=122  Identities=23%  Similarity=0.284  Sum_probs=103.5

Q ss_pred             cccCCccEEEeecCCCcccCccccCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCcCCcccccCCCCcEE
Q 037969          149 DALKKCSAISLLNSSIHEVSEEFECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPSSIGLLANLQTL  228 (300)
Q Consensus       149 ~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L  228 (300)
                      ..++++++|++++|.+..++....+++|+.|++++|.+  ..+|... ..++.|++|++++|.++.++ .+..+++|++|
T Consensus        45 ~~L~~L~~L~Ls~n~I~~i~~l~~l~~L~~L~Ls~N~i--~~i~~~~-~~~~~L~~L~l~~N~i~~l~-~~~~l~~L~~L  120 (198)
T d1m9la_          45 STLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLI--KKIENLD-AVADTLEELWISYNQIASLS-GIEKLVNLRVL  120 (198)
T ss_dssp             HHTTTCCEEECSEEEESCCCCHHHHTTCCEEECCEEEE--CSCSSHH-HHHHHCCEEECSEEECCCHH-HHHHHHHSSEE
T ss_pred             hcccccceeECcccCCCCcccccCCccccChhhccccc--ccccccc-cccccccccccccccccccc-ccccccccccc
Confidence            45778999999999998887666999999999999999  8887643 56678999999999999875 47889999999


Q ss_pred             EccCCCCCC-c--ccccCCCCcCEEEccCCCCCCCchh-----------hcCCCCCCEEe
Q 037969          229 CLDQSMLGD-I--AIIGKLKNLEILSFLNSDIVRLPGE-----------LGQLTKLRLLD  274 (300)
Q Consensus       229 ~l~~~~l~~-p--~~~~~l~~L~~L~l~~~~l~~lp~~-----------~~~l~~L~~L~  274 (300)
                      ++++|.+.. +  ..+..+++|++|++++|.+...+..           +.++++|+.||
T Consensus       121 ~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         121 YMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             EESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred             ccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence            999999988 3  5689999999999999977633221           56789999987

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=3e-11  Score=90.46  Aligned_cols=102  Identities=15%  Similarity=0.145  Sum_probs=69.1

Q ss_pred             cEEEeecCCCcccCccc-cCCCccEEecccCc-cccccCchhHHhcCCcccEEEeeCCcCCcC-CcccccCCCCcEEEcc
Q 037969          155 SAISLLNSSIHEVSEEF-ECLQLEFLHISQNT-FVEVNIPDNIFKGMKTLRVIDLTRMRLFSL-PSSIGLLANLQTLCLD  231 (300)
Q Consensus       155 ~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~-~~~~~l~~~~~~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~l~  231 (300)
                      ..++..++....+|..+ .+++|+.|++.++. +  ..++...|.++++|+.|++++|+++.+ |..+..+++|++|+|+
T Consensus        11 ~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l--~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls   88 (156)
T d2ifga3          11 SGLRCTRDGALDSLHHLPGAENLTELYIENQQHL--QHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (156)
T ss_dssp             SCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSC--CEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             CeEEecCCCCccCcccccCccccCeeecCCCccc--cccCchhhccccccCcceeeccccCCcccccccccccccceecc
Confidence            34566666665555554 67777777776554 5  666666567777777777777777776 4557777777777777


Q ss_pred             CCCCCC-cccccCCCCcCEEEccCCCCC
Q 037969          232 QSMLGD-IAIIGKLKNLEILSFLNSDIV  258 (300)
Q Consensus       232 ~~~l~~-p~~~~~l~~L~~L~l~~~~l~  258 (300)
                      +|.++. |..+....+|+.|++++|.+.
T Consensus        89 ~N~l~~l~~~~~~~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          89 FNALESLSWKTVQGLSLQELVLSGNPLH  116 (156)
T ss_dssp             SSCCSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred             CCCCcccChhhhccccccccccCCCccc
Confidence            777776 555444556777777777654

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=8.2e-11  Score=94.56  Aligned_cols=161  Identities=21%  Similarity=0.236  Sum_probs=101.6

Q ss_pred             eccccccCCCccccCCccEEEeecCCCcccCcc-c-cCCCccEEecccCccccccCchhHHhcCCcccEEEeeC-CcCCc
Q 037969          138 RNEVVWEWPDEDALKKCSAISLLNSSIHEVSEE-F-ECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTR-MRLFS  214 (300)
Q Consensus       138 ~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~-~-~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~-~~~~~  214 (300)
                      .+..+..+|. ...++++.|++++|.+..+|.. + ++++|++|++++|... ..++...|..+..++.+.+.. +.+..
T Consensus        16 ~~~~l~~iP~-~l~~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~-~~i~~~~f~~l~~l~~l~~~~~n~l~~   93 (242)
T d1xwdc1          16 QESKVTEIPS-DLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVL-EVIEADVFSNLPKLHEIRIEKANNLLY   93 (242)
T ss_dssp             ESCSCSSCCS-CSCSCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTC-CEECSSSEESCTTCCEEEEECCTTCCE
T ss_pred             eCCCCCCcCC-CCCCCCCEEECcCCcCCccChhHhhccchhhhhhhcccccc-ceeeccccccccccccccccccccccc
Confidence            3344555554 2234677777777777666653 2 6777777777777652 234444445566666666543 34444


Q ss_pred             C-CcccccCCCCcEEEccCCCCCC---------------------------cccccCC-CCcCEEEccCCCCCCCchhhc
Q 037969          215 L-PSSIGLLANLQTLCLDQSMLGD---------------------------IAIIGKL-KNLEILSFLNSDIVRLPGELG  265 (300)
Q Consensus       215 l-p~~i~~l~~L~~L~l~~~~l~~---------------------------p~~~~~l-~~L~~L~l~~~~l~~lp~~~~  265 (300)
                      . +..+..+++|++++++++.+..                           +..+..+ ..++.|++.+|.++.++....
T Consensus        94 ~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i~~~~~  173 (242)
T d1xwdc1          94 INPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAF  173 (242)
T ss_dssp             ECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTTT
T ss_pred             cccccccccccccccccchhhhcccccccccccccccccccccccccccccccccccccccceeeecccccccccccccc
Confidence            3 3445666666666666664432                           1222233 367778888888888888777


Q ss_pred             CCCCCCEEeccCCCCccccchhhhcCCCCCCeeeC
Q 037969          266 QLTKLRLLDLTDCLQLKFIVPNVLSSFTRLEELYM  300 (300)
Q Consensus       266 ~l~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l  300 (300)
                      +..++..+....+..++.+|...+.++++|++|++
T Consensus       174 ~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~L  208 (242)
T d1xwdc1         174 NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDI  208 (242)
T ss_dssp             TTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEEC
T ss_pred             cchhhhccccccccccccccHHHhcCCCCCCEEEC
Confidence            77887777654444489999877899999999986

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=3.5e-11  Score=99.34  Aligned_cols=149  Identities=17%  Similarity=0.149  Sum_probs=64.7

Q ss_pred             cCCccEEEeecCCCc-ccC-ccccCCCccEEecccCccccccCchhHHhcCCcccEEEeeCC-cCCc--CCccccc-CCC
Q 037969          151 LKKCSAISLLNSSIH-EVS-EEFECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRM-RLFS--LPSSIGL-LAN  224 (300)
Q Consensus       151 ~~~l~~L~l~~~~~~-~~~-~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~-~~~~--lp~~i~~-l~~  224 (300)
                      .+++++|.+.++.+. ..+ ....+++|+.|++++|..++..--..+...+++|++|+++++ .++.  ++..+.. .++
T Consensus        70 c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~  149 (284)
T d2astb2          70 CSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSET  149 (284)
T ss_dssp             BCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTT
T ss_pred             CCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhcccccc
Confidence            345555555555441 111 112455555555555432111111122244555666665554 2221  1222222 234


Q ss_pred             CcEEEccCCC--CCC--c-ccccCCCCcCEEEccCC-CCC-CCchhhcCCCCCCEEeccCCCCccccchhhhcCCCCCCe
Q 037969          225 LQTLCLDQSM--LGD--I-AIIGKLKNLEILSFLNS-DIV-RLPGELGQLTKLRLLDLTDCLQLKFIVPNVLSSFTRLEE  297 (300)
Q Consensus       225 L~~L~l~~~~--l~~--p-~~~~~l~~L~~L~l~~~-~l~-~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~  297 (300)
                      |+.|+++++.  +..  . .-...+++|++|++++| .++ ..+..++++++|++|++++|..+..-....++++++|++
T Consensus       150 L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~  229 (284)
T d2astb2         150 ITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKT  229 (284)
T ss_dssp             CCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCE
T ss_pred             cchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCE
Confidence            5555555432  222  1 12234555666666555 343 333445555566666665554333221111455555555


Q ss_pred             ee
Q 037969          298 LY  299 (300)
Q Consensus       298 L~  299 (300)
                      |+
T Consensus       230 L~  231 (284)
T d2astb2         230 LQ  231 (284)
T ss_dssp             EE
T ss_pred             Ee
Confidence            54

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=2.5e-10  Score=85.32  Aligned_cols=103  Identities=17%  Similarity=0.074  Sum_probs=74.2

Q ss_pred             CCccEEecccCccccccCchhHHhcCCcccEEEeeCC-cCCcCC-cccccCCCCcEEEccCCCCCC--cccccCCCCcCE
Q 037969          174 LQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRM-RLFSLP-SSIGLLANLQTLCLDQSMLGD--IAIIGKLKNLEI  249 (300)
Q Consensus       174 ~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~-~~~~lp-~~i~~l~~L~~L~l~~~~l~~--p~~~~~l~~L~~  249 (300)
                      .....++..++..  ...|..+ ..+++|+.|++.++ .++.++ ..+..+++|+.|++++|.++.  +..+..+++|++
T Consensus         8 ~~~~~l~c~~~~~--~~~p~~l-~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~   84 (156)
T d2ifga3           8 HGSSGLRCTRDGA--LDSLHHL-PGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSR   84 (156)
T ss_dssp             SSSSCEECCSSCC--CTTTTTS-CSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCE
T ss_pred             CCCCeEEecCCCC--ccCcccc-cCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccc
Confidence            3445566666666  5666655 56778888888655 477764 457778888888888888776  456777888888


Q ss_pred             EEccCCCCCCCchhhcCCCCCCEEeccCCC
Q 037969          250 LSFLNSDIVRLPGELGQLTKLRLLDLTDCL  279 (300)
Q Consensus       250 L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~  279 (300)
                      |++++|.++.+|..+....+|++|++++|+
T Consensus        85 L~Ls~N~l~~l~~~~~~~~~l~~L~L~~Np  114 (156)
T d2ifga3          85 LNLSFNALESLSWKTVQGLSLQELVLSGNP  114 (156)
T ss_dssp             EECCSSCCSCCCSTTTCSCCCCEEECCSSC
T ss_pred             eeccCCCCcccChhhhccccccccccCCCc
Confidence            888888888887776666678888888776

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=2.8e-10  Score=93.76  Aligned_cols=149  Identities=17%  Similarity=0.214  Sum_probs=108.1

Q ss_pred             ccCCccEEEeecCCCc--ccCccc-cCCCccEEecccCccccccCchhHHhcCCcccEEEeeCC-cCCc--CCcccccCC
Q 037969          150 ALKKCSAISLLNSSIH--EVSEEF-ECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRM-RLFS--LPSSIGLLA  223 (300)
Q Consensus       150 ~~~~l~~L~l~~~~~~--~~~~~~-~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~-~~~~--lp~~i~~l~  223 (300)
                      ...++++|+++++.+.  .++... .+++|+.|.+.++.+ ....+..+ ..+++|++|+++++ .++.  +..-...++
T Consensus        44 ~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l-~~~~~~~l-~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~  121 (284)
T d2astb2          44 SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRL-SDPIVNTL-AKNSNLVRLNLSGCSGFSEFALQTLLSSCS  121 (284)
T ss_dssp             CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBC-CHHHHHHH-TTCTTCSEEECTTCBSCCHHHHHHHHHHCT
T ss_pred             cCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCC-CcHHHHHH-hcCCCCcCccccccccccccccchhhHHHH
Confidence            4457899999988763  344444 899999999999976 23444444 78899999999996 5653  333456789


Q ss_pred             CCcEEEccCCC-CCC---cccccC-CCCcCEEEccCC--CCC--CCchhhcCCCCCCEEeccCCCCccccchhhhcCCCC
Q 037969          224 NLQTLCLDQSM-LGD---IAIIGK-LKNLEILSFLNS--DIV--RLPGELGQLTKLRLLDLTDCLQLKFIVPNVLSSFTR  294 (300)
Q Consensus       224 ~L~~L~l~~~~-l~~---p~~~~~-l~~L~~L~l~~~--~l~--~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~l~~L~~  294 (300)
                      +|++|++++|. +..   ...+.. .++|+.|+++++  .++  .+..-..++++|++|++++|..++.-....+..+++
T Consensus       122 ~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~  201 (284)
T d2astb2         122 RLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNY  201 (284)
T ss_dssp             TCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTT
T ss_pred             hccccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCc
Confidence            99999999975 443   233433 478999999987  344  344445678999999999997665333223889999


Q ss_pred             CCeeeC
Q 037969          295 LEELYM  300 (300)
Q Consensus       295 L~~L~l  300 (300)
                      |++|++
T Consensus       202 L~~L~L  207 (284)
T d2astb2         202 LQHLSL  207 (284)
T ss_dssp             CCEEEC
T ss_pred             CCEEEC
Confidence            999975

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.96  E-value=5.4e-09  Score=87.92  Aligned_cols=130  Identities=18%  Similarity=0.204  Sum_probs=77.1

Q ss_pred             EEEeccccccCCCccccCCccEEEeecCCCcccCccccCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCc
Q 037969          135 FLVRNEVVWEWPDEDALKKCSAISLLNSSIHEVSEEFECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFS  214 (300)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~  214 (300)
                      ....+..+..+|.  .+++++.|++++|.+..+|..  +.+|+.|++.+|..  ..+++ +   .+.|++|++++|.++.
T Consensus        43 LdLs~~~L~~lp~--~~~~L~~L~Ls~N~l~~lp~~--~~~L~~L~l~~n~l--~~l~~-l---p~~L~~L~L~~n~l~~  112 (353)
T d1jl5a_          43 LELNNLGLSSLPE--LPPHLESLVASCNSLTELPEL--PQSLKSLLVDNNNL--KALSD-L---PPLLEYLGVSNNQLEK  112 (353)
T ss_dssp             EECTTSCCSCCCS--CCTTCSEEECCSSCCSSCCCC--CTTCCEEECCSSCC--SCCCS-C---CTTCCEEECCSSCCSS
T ss_pred             EEeCCCCCCCCCC--CCCCCCEEECCCCCCcccccc--hhhhhhhhhhhccc--chhhh-h---cccccccccccccccc
Confidence            3344455555553  345667777777766666653  35667777776666  55543 1   2356777777777766


Q ss_pred             CCcccccCCCCcEEEccCCCCCC-cccccCCCCcCEEEccCCCCCCCchhhcCCCCCCEEeccCCC
Q 037969          215 LPSSIGLLANLQTLCLDQSMLGD-IAIIGKLKNLEILSFLNSDIVRLPGELGQLTKLRLLDLTDCL  279 (300)
Q Consensus       215 lp~~i~~l~~L~~L~l~~~~l~~-p~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~  279 (300)
                      +|. ++.+++|++|+++++.+.. +..   ...+..+.+..+..... ..++.++.++.+++.++.
T Consensus       113 lp~-~~~l~~L~~L~l~~~~~~~~~~~---~~~l~~l~~~~~~~~~~-~~l~~l~~l~~L~l~~n~  173 (353)
T d1jl5a_         113 LPE-LQNSSFLKIIDVDNNSLKKLPDL---PPSLEFIAAGNNQLEEL-PELQNLPFLTAIYADNNS  173 (353)
T ss_dssp             CCC-CTTCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSSC-CCCTTCTTCCEEECCSSC
T ss_pred             ccc-hhhhccceeeccccccccccccc---cccccchhhcccccccc-ccccccccceeccccccc
Confidence            664 4566777777776666554 332   23455555555443322 345667778888887776

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.86  E-value=4.8e-09  Score=88.24  Aligned_cols=130  Identities=19%  Similarity=0.269  Sum_probs=101.3

Q ss_pred             CccEEEeecCCCcccCccccCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCcCCcccccCCCCcEEEccC
Q 037969          153 KCSAISLLNSSIHEVSEEFECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPSSIGLLANLQTLCLDQ  232 (300)
Q Consensus       153 ~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~  232 (300)
                      ++++|+++++.+..+|+.  .++|++|++++|.+  ..+|+.    +.+|+.|++.+++++.++.-   .+.|++|++++
T Consensus        39 ~l~~LdLs~~~L~~lp~~--~~~L~~L~Ls~N~l--~~lp~~----~~~L~~L~l~~n~l~~l~~l---p~~L~~L~L~~  107 (353)
T d1jl5a_          39 QAHELELNNLGLSSLPEL--PPHLESLVASCNSL--TELPEL----PQSLKSLLVDNNNLKALSDL---PPLLEYLGVSN  107 (353)
T ss_dssp             TCSEEECTTSCCSCCCSC--CTTCSEEECCSSCC--SSCCCC----CTTCCEEECCSSCCSCCCSC---CTTCCEEECCS
T ss_pred             CCCEEEeCCCCCCCCCCC--CCCCCEEECCCCCC--cccccc----hhhhhhhhhhhcccchhhhh---ccccccccccc
Confidence            578999999999989874  57899999999999  888864    46899999999999887642   24699999999


Q ss_pred             CCCCCcccccCCCCcCEEEccCCCCCCCchhhcCCCCCCEEeccCCCCccccchhhhcCCCCCCeee
Q 037969          233 SMLGDIAIIGKLKNLEILSFLNSDIVRLPGELGQLTKLRLLDLTDCLQLKFIVPNVLSSFTRLEELY  299 (300)
Q Consensus       233 ~~l~~p~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~  299 (300)
                      |.+...+.++.+++|++|+++++.+...|..   ...+..+.+..+.. ... .. ++.++.++.|.
T Consensus       108 n~l~~lp~~~~l~~L~~L~l~~~~~~~~~~~---~~~l~~l~~~~~~~-~~~-~~-l~~l~~l~~L~  168 (353)
T d1jl5a_         108 NQLEKLPELQNSSFLKIIDVDNNSLKKLPDL---PPSLEFIAAGNNQL-EEL-PE-LQNLPFLTAIY  168 (353)
T ss_dssp             SCCSSCCCCTTCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCC-SSC-CC-CTTCTTCCEEE
T ss_pred             cccccccchhhhccceeeccccccccccccc---cccccchhhccccc-ccc-cc-ccccccceecc
Confidence            9998844578999999999999988877754   35666777766652 222 22 56677776664

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.28  E-value=6.8e-07  Score=74.94  Aligned_cols=149  Identities=13%  Similarity=0.149  Sum_probs=99.2

Q ss_pred             ccCCccEEEeecCCCcc-----c----Cc------cccCCCccEEecccCccccc---cCchhHHhcCCcccEEEeeCCc
Q 037969          150 ALKKCSAISLLNSSIHE-----V----SE------EFECLQLEFLHISQNTFVEV---NIPDNIFKGMKTLRVIDLTRMR  211 (300)
Q Consensus       150 ~~~~l~~L~l~~~~~~~-----~----~~------~~~~~~L~~L~l~~~~~~~~---~l~~~~~~~l~~L~~L~l~~~~  211 (300)
                      ..+++++|++.+|.+..     +    ..      ....+.|+.+.+.++.+...   .+... +...+.|+.|++++|.
T Consensus       119 ~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~-l~~~~~L~~L~L~~n~  197 (344)
T d2ca6a1         119 KHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT-FQSHRLLHTVKMVQNG  197 (344)
T ss_dssp             HCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHH-HHHCTTCCEEECCSSC
T ss_pred             ccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccch-hhhhhhhccccccccc
Confidence            45678888888887621     1    00      01456788888887765111   12222 3567889999999998


Q ss_pred             CCc------CCcccccCCCCcEEEccCCCCCC------cccccCCCCcCEEEccCCCCCC-----CchhhcC--CCCCCE
Q 037969          212 LFS------LPSSIGLLANLQTLCLDQSMLGD------IAIIGKLKNLEILSFLNSDIVR-----LPGELGQ--LTKLRL  272 (300)
Q Consensus       212 ~~~------lp~~i~~l~~L~~L~l~~~~l~~------p~~~~~l~~L~~L~l~~~~l~~-----lp~~~~~--l~~L~~  272 (300)
                      +..      +...+...++|+.|++++|.+..      ...+...++|++|++++|.+..     +-..+..  .+.|++
T Consensus       198 i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~  277 (344)
T d2ca6a1         198 IRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQT  277 (344)
T ss_dssp             CCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCE
T ss_pred             ccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCE
Confidence            764      23446778899999999998753      2556788999999999998872     2223333  367999


Q ss_pred             EeccCCCCccc-----cchhhhcCCCCCCeeeC
Q 037969          273 LDLTDCLQLKF-----IVPNVLSSFTRLEELYM  300 (300)
Q Consensus       273 L~l~~~~~l~~-----lp~~~l~~L~~L~~L~l  300 (300)
                      |++++|. ++.     +...+-.++++|++|+|
T Consensus       278 L~ls~N~-i~~~~~~~l~~~l~~~~~~L~~L~l  309 (344)
T d2ca6a1         278 LRLQYNE-IELDAVRTLKTVIDEKMPDLLFLEL  309 (344)
T ss_dssp             EECCSSC-CBHHHHHHHHHHHHHHCTTCCEEEC
T ss_pred             EECCCCc-CChHHHHHHHHHHHccCCCCCEEEC
Confidence            9999997 432     33331235778888865

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.27  E-value=2.7e-08  Score=74.46  Aligned_cols=82  Identities=24%  Similarity=0.156  Sum_probs=60.9

Q ss_pred             hhHHhcCCcccEEEeeCCcCCcCC---cccccCCCCcEEEccCCCCCCccc--ccCCCCcCEEEccCCCCCCCch-----
Q 037969          193 DNIFKGMKTLRVIDLTRMRLFSLP---SSIGLLANLQTLCLDQSMLGDIAI--IGKLKNLEILSFLNSDIVRLPG-----  262 (300)
Q Consensus       193 ~~~~~~l~~L~~L~l~~~~~~~lp---~~i~~l~~L~~L~l~~~~l~~p~~--~~~l~~L~~L~l~~~~l~~lp~-----  262 (300)
                      +.++..++.|++|++++|+++.++   ..+..+++|++|++++|.++..+.  .....+|+.|++.+|.+.....     
T Consensus        58 ~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y  137 (162)
T d1koha1          58 RIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTY  137 (162)
T ss_dssp             HHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHH
T ss_pred             HHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhH
Confidence            345567899999999999998763   446788999999999999888322  2234568999999998764322     


Q ss_pred             ---hhcCCCCCCEEe
Q 037969          263 ---ELGQLTKLRLLD  274 (300)
Q Consensus       263 ---~~~~l~~L~~L~  274 (300)
                         -+..+++|+.||
T Consensus       138 ~~~i~~~~P~L~~LD  152 (162)
T d1koha1         138 ISAIRERFPKLLRLD  152 (162)
T ss_dssp             HHHHHTTSTTCCEET
T ss_pred             HHHHHHHCCCCCEEC
Confidence               255688888887

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.21  E-value=2.1e-07  Score=80.55  Aligned_cols=104  Identities=13%  Similarity=0.182  Sum_probs=44.7

Q ss_pred             ccEEEeecCCCcc--cCccc-cCCCccEEecccCccccc---cCchhHHhcCCcccEEEeeCCcCCc-----CCcccc-c
Q 037969          154 CSAISLLNSSIHE--VSEEF-ECLQLEFLHISQNTFVEV---NIPDNIFKGMKTLRVIDLTRMRLFS-----LPSSIG-L  221 (300)
Q Consensus       154 l~~L~l~~~~~~~--~~~~~-~~~~L~~L~l~~~~~~~~---~l~~~~~~~l~~L~~L~l~~~~~~~-----lp~~i~-~  221 (300)
                      ++.|+++.+.+..  +.... .++++++|++.+|.+-..   .+... +...++|+.|+|++|.++.     +...+. .
T Consensus         4 l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~-L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~   82 (460)
T d1z7xw1           4 IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSA-LRVNPALAELNLRSNELGDVGVHCVLQGLQTP   82 (460)
T ss_dssp             EEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHH-HHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred             CCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHH-HhcCCCCCEEECcCCcCChHHHHHHHHHHhcC
Confidence            5556666555522  12212 445555555555544000   11111 2344555555555555432     111111 1


Q ss_pred             CCCCcEEEccCCCCCC------cccccCCCCcCEEEccCCCCC
Q 037969          222 LANLQTLCLDQSMLGD------IAIIGKLKNLEILSFLNSDIV  258 (300)
Q Consensus       222 l~~L~~L~l~~~~l~~------p~~~~~l~~L~~L~l~~~~l~  258 (300)
                      ..+|++|++++|.+..      +..+..+++|++|++++|.+.
T Consensus        83 ~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~  125 (460)
T d1z7xw1          83 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLG  125 (460)
T ss_dssp             TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCH
T ss_pred             CCCCCEEECCCCCccccccccccchhhccccccccccccccch
Confidence            1245555555555432      123444555555555555443

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.16  E-value=7.4e-07  Score=74.70  Aligned_cols=128  Identities=18%  Similarity=0.198  Sum_probs=94.0

Q ss_pred             cCCccEEEeecCCCcc-----cCccc-cCCCccEEecccCcccccc-----CchhHHhcCCcccEEEeeCCcCCc-----
Q 037969          151 LKKCSAISLLNSSIHE-----VSEEF-ECLQLEFLHISQNTFVEVN-----IPDNIFKGMKTLRVIDLTRMRLFS-----  214 (300)
Q Consensus       151 ~~~l~~L~l~~~~~~~-----~~~~~-~~~~L~~L~l~~~~~~~~~-----l~~~~~~~l~~L~~L~l~~~~~~~-----  214 (300)
                      .+.++.+.+..+.+..     +.... .++.++.|++.+|.+  ..     +....+...++|+.|++++|.++.     
T Consensus       157 ~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i--~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~  234 (344)
T d2ca6a1         157 APPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGI--RPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSA  234 (344)
T ss_dssp             CCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCC--CHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHH
T ss_pred             Ccccceeecccccccccccccccchhhhhhhhcccccccccc--cccccccchhhhhcchhhhccccccccccccccccc
Confidence            4567888888887631     22223 678999999999887  32     111223678899999999998863     


Q ss_pred             CCcccccCCCCcEEEccCCCCCC--c----ccccC--CCCcCEEEccCCCCC-----CCchhhc-CCCCCCEEeccCCCC
Q 037969          215 LPSSIGLLANLQTLCLDQSMLGD--I----AIIGK--LKNLEILSFLNSDIV-----RLPGELG-QLTKLRLLDLTDCLQ  280 (300)
Q Consensus       215 lp~~i~~l~~L~~L~l~~~~l~~--p----~~~~~--l~~L~~L~l~~~~l~-----~lp~~~~-~l~~L~~L~l~~~~~  280 (300)
                      +...+...++|++|++++|.+..  .    ..+..  .+.|++|++++|.++     .+...+. +.++|++|++++|..
T Consensus       235 L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~  314 (344)
T d2ca6a1         235 LAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF  314 (344)
T ss_dssp             HHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBS
T ss_pred             ccccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcC
Confidence            45567788999999999999875  2    33333  467999999999886     2445553 678999999999984

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.13  E-value=2.2e-07  Score=69.35  Aligned_cols=80  Identities=21%  Similarity=0.181  Sum_probs=43.0

Q ss_pred             ccCCCCcEEEccCCCCCCc----ccccCCCCcCEEEccCCCCCCCch-hhcCCCCCCEEeccCCCCccccc------hhh
Q 037969          220 GLLANLQTLCLDQSMLGDI----AIIGKLKNLEILSFLNSDIVRLPG-ELGQLTKLRLLDLTDCLQLKFIV------PNV  288 (300)
Q Consensus       220 ~~l~~L~~L~l~~~~l~~p----~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~l~~lp------~~~  288 (300)
                      ..+++|++|++++|.++..    ..+..+++|+.|++++|.++.++. ...+..+|+.|++++|+......      ..+
T Consensus        62 ~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i  141 (162)
T d1koha1          62 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAI  141 (162)
T ss_dssp             HHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHH
T ss_pred             HhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHH
Confidence            4456666666666666541    334456666666666666666554 12233456666666666322211      122


Q ss_pred             hcCCCCCCeee
Q 037969          289 LSSFTRLEELY  299 (300)
Q Consensus       289 l~~L~~L~~L~  299 (300)
                      +..+++|+.|+
T Consensus       142 ~~~~P~L~~LD  152 (162)
T d1koha1         142 RERFPKLLRLD  152 (162)
T ss_dssp             HTTSTTCCEET
T ss_pred             HHHCCCCCEEC
Confidence            44566666554

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.97  E-value=2.2e-06  Score=73.98  Aligned_cols=107  Identities=23%  Similarity=0.292  Sum_probs=82.3

Q ss_pred             CCccEEecccCccccccC-chhHHhcCCcccEEEeeCCcCCc-----CCcccccCCCCcEEEccCCCCCC--ccccc---
Q 037969          174 LQLEFLHISQNTFVEVNI-PDNIFKGMKTLRVIDLTRMRLFS-----LPSSIGLLANLQTLCLDQSMLGD--IAIIG---  242 (300)
Q Consensus       174 ~~L~~L~l~~~~~~~~~l-~~~~~~~l~~L~~L~l~~~~~~~-----lp~~i~~l~~L~~L~l~~~~l~~--p~~~~---  242 (300)
                      .+|+.|+++++.+  ... -..++..++++++|+|++|.++.     ++..+...++|++|++++|.+..  ...+.   
T Consensus         2 ~~l~~ld~~~~~i--~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l   79 (460)
T d1z7xw1           2 LDIQSLDIQCEEL--SDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGL   79 (460)
T ss_dssp             EEEEEEEEESCCC--CHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTT
T ss_pred             CCCCEEEeeCCcC--ChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHH
Confidence            3688999999888  321 13345788999999999999873     45667889999999999998864  22222   


Q ss_pred             --CCCCcCEEEccCCCCCC-----CchhhcCCCCCCEEeccCCCCccc
Q 037969          243 --KLKNLEILSFLNSDIVR-----LPGELGQLTKLRLLDLTDCLQLKF  283 (300)
Q Consensus       243 --~l~~L~~L~l~~~~l~~-----lp~~~~~l~~L~~L~l~~~~~l~~  283 (300)
                        ...+|++|++++|.++.     ++..+..+++|++|++++|. ++.
T Consensus        80 ~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~-i~~  126 (460)
T d1z7xw1          80 QTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL-LGD  126 (460)
T ss_dssp             CSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSB-CHH
T ss_pred             hcCCCCCCEEECCCCCccccccccccchhhcccccccccccccc-chh
Confidence              23579999999998873     45667889999999999998 443

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.34  E-value=0.00014  Score=53.86  Aligned_cols=107  Identities=11%  Similarity=0.030  Sum_probs=72.9

Q ss_pred             cCCCccEEecccCc-cccccCchh---HHhcCCcccEEEeeCCcCCc-----CCcccccCCCCcEEEccCCCCCC--c--
Q 037969          172 ECLQLEFLHISQNT-FVEVNIPDN---IFKGMKTLRVIDLTRMRLFS-----LPSSIGLLANLQTLCLDQSMLGD--I--  238 (300)
Q Consensus       172 ~~~~L~~L~l~~~~-~~~~~l~~~---~~~~l~~L~~L~l~~~~~~~-----lp~~i~~l~~L~~L~l~~~~l~~--p--  238 (300)
                      +.+.|+.|+++++. + +...-..   .+...+.|++|++++|.+..     +.+.+...+.|+.|++++|.+..  .  
T Consensus        13 n~~~L~~L~L~~~~~i-~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~   91 (167)
T d1pgva_          13 DDTDLKEVNINNMKRV-SKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR   91 (167)
T ss_dssp             TCSSCCEEECTTCCSS-CHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred             CCCCCcEEEeCCCCCC-CHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHH
Confidence            45789999998643 3 1111111   13456789999999988863     33455667889999999998775  2  


Q ss_pred             --ccccCCCCcCEEEccCCCCCCC--------chhhcCCCCCCEEeccCCC
Q 037969          239 --AIIGKLKNLEILSFLNSDIVRL--------PGELGQLTKLRLLDLTDCL  279 (300)
Q Consensus       239 --~~~~~l~~L~~L~l~~~~l~~l--------p~~~~~l~~L~~L~l~~~~  279 (300)
                        ..+..-+.|++|++.+|.+..+        ...+..-+.|+.|+++.+.
T Consensus        92 l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~  142 (167)
T d1pgva_          92 LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS  142 (167)
T ss_dssp             HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             HHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCC
Confidence              5567778899999988765533        3335556788888887654

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.23  E-value=0.00016  Score=53.45  Aligned_cols=62  Identities=13%  Similarity=0.198  Sum_probs=29.9

Q ss_pred             cCCCccEEecccCcccc---ccCchhHHhcCCcccEEEeeCCcCCc-----CCcccccCCCCcEEEccCCC
Q 037969          172 ECLQLEFLHISQNTFVE---VNIPDNIFKGMKTLRVIDLTRMRLFS-----LPSSIGLLANLQTLCLDQSM  234 (300)
Q Consensus       172 ~~~~L~~L~l~~~~~~~---~~l~~~~~~~l~~L~~L~l~~~~~~~-----lp~~i~~l~~L~~L~l~~~~  234 (300)
                      ..+.|+.|++++|.+-.   ..+.+ .+...+.|+.|++++|.+..     +-..+..-+.|++|+++++.
T Consensus        42 ~n~~L~~L~Ls~n~l~~~~~~~la~-~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~  111 (167)
T d1pgva_          42 NSKHIEKFSLANTAISDSEARGLIE-LIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQR  111 (167)
T ss_dssp             TCSCCCEEECTTSCCBHHHHTTHHH-HHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCS
T ss_pred             hCCccceeeccccccchhHHHHHhh-hhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCc
Confidence            34556666666655410   01111 12344556666666665553     22234444556666665554

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.86  E-value=0.00049  Score=50.58  Aligned_cols=107  Identities=13%  Similarity=0.120  Sum_probs=71.8

Q ss_pred             cCCCccEEecccCc-cccccCchhH---HhcCCcccEEEeeCCcCCc-----CCcccccCCCCcEEEccCCCCCC-----
Q 037969          172 ECLQLEFLHISQNT-FVEVNIPDNI---FKGMKTLRVIDLTRMRLFS-----LPSSIGLLANLQTLCLDQSMLGD-----  237 (300)
Q Consensus       172 ~~~~L~~L~l~~~~-~~~~~l~~~~---~~~l~~L~~L~l~~~~~~~-----lp~~i~~l~~L~~L~l~~~~l~~-----  237 (300)
                      +.+.|+.|.+.++. + +...-..+   +...++|+.|++++|.+..     +-+.+...+.++.++++++.+..     
T Consensus        15 ~~~~L~~L~L~~~~~i-~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~   93 (166)
T d1io0a_          15 NDPDLEEVNLNNIMNI-PVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA   93 (166)
T ss_dssp             TCTTCCEEECTTCTTC-CHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred             cCCCCcEEEcCCCCCC-CHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHH
Confidence            56788899888643 3 11111111   2467889999999988763     33455667889999998888764     


Q ss_pred             -cccccCCCCcCEEEccC--CCCC-----CCchhhcCCCCCCEEeccCCC
Q 037969          238 -IAIIGKLKNLEILSFLN--SDIV-----RLPGELGQLTKLRLLDLTDCL  279 (300)
Q Consensus       238 -p~~~~~l~~L~~L~l~~--~~l~-----~lp~~~~~l~~L~~L~l~~~~  279 (300)
                       ...+...++|+.+++..  +.+.     .+...+.+.+.|++|+++.+.
T Consensus        94 l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~  143 (166)
T d1io0a_          94 LVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ  143 (166)
T ss_dssp             HHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             HHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCC
Confidence             16667778888766654  4554     344556678889999887664

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.58  E-value=0.0014  Score=47.98  Aligned_cols=83  Identities=14%  Similarity=0.179  Sum_probs=38.3

Q ss_pred             cCCCccEEecccCccccc---cCchhHHhcCCcccEEEeeCCcCCc-----CCcccccCCCCcEEEcc--CCCCCC----
Q 037969          172 ECLQLEFLHISQNTFVEV---NIPDNIFKGMKTLRVIDLTRMRLFS-----LPSSIGLLANLQTLCLD--QSMLGD----  237 (300)
Q Consensus       172 ~~~~L~~L~l~~~~~~~~---~l~~~~~~~l~~L~~L~l~~~~~~~-----lp~~i~~l~~L~~L~l~--~~~l~~----  237 (300)
                      ..++|+.|++++|.+-..   .+-+ .+...+.++.++++++.+..     +...+...++|+.++|.  ++.+..    
T Consensus        44 ~n~~L~~L~Ls~n~l~~~~~~~L~~-~l~~~~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~  122 (166)
T d1io0a_          44 TNTYVKKFSIVGTRSNDPVAFALAE-MLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEM  122 (166)
T ss_dssp             TCCSCCEEECTTSCCCHHHHHHHHH-HHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHH
T ss_pred             cCCccCeeeccCCcccHHHHHHHHH-HHhhcccchhhhhccccccchhHHHHHHHHHhCccccEEeeccCCCcCcHHHHH
Confidence            445566666666554100   0111 12344556666666655542     23344445555554443  333332    


Q ss_pred             --cccccCCCCcCEEEccCC
Q 037969          238 --IAIIGKLKNLEILSFLNS  255 (300)
Q Consensus       238 --p~~~~~l~~L~~L~l~~~  255 (300)
                        ...+...++|+.|++..+
T Consensus       123 ~La~~L~~n~~L~~L~l~~~  142 (166)
T d1io0a_         123 EIANMLEKNTTLLKFGYHFT  142 (166)
T ss_dssp             HHHHHHHHCSSCCEEECCCS
T ss_pred             HHHHHHHhCCCcCEEeCcCC
Confidence              133345556666665544