Citrus Sinensis ID: 037972

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480
MDFHNVAPDFVKYFDVEEKSMPAAGYAYINEANFLRPRAIKVILQNSKSNKRNAYIPYLALNYFDRFISKHTLPEVLGNVEDDLVLAANCCLIIAWKLRDQSFSFSDFMAGNNLPRNYSKHALNMELQILNGLEWRSRAVVAVNFVPFFLNISSAKGIKRRHVNRIIIEAQADLSFASCKPSVIAAAALVHVCKLLLRDENGERPDAKRCRESLIDSTYVDEDSLDSFCTMLDHMCCRKKMFQEINEEFLSDVGGFHVLLNLDDAQQLWSLYDFKEWWWVIATRTAKDSEPSQSAERSHAGESSFSFPRPPQLAQRSHAAESSSSSPWSHQVAPRSHAGGASSSSPFRPGEQPTEEIAETLEEPEDETVLGADSEISGSFSRRPGKQPMEEGSEADIETPSSFPDRQGIQTMQGEPEADPRTSMDFELKWDLDIDETRLTIDSSLFRPPTARTERRRFFSFPISSCWHRKRSIRSKNKEQ
ccccccHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHcccccccccHHcHHHHHHHHccccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHcccccEEEEEcccccccccccHHccccccccccccccccHHHHHHHHccccccccccccccccccccccccccccccccccHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccccccccHHHHcccccccccccHHHcccccccccccc
cccccHHHHHHHHHHHHHHccccccHHHHcccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHccccccHHHcccccccEEcHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccHccccHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccEEEcccccccccHHHcccccHHHHHHHcccccccccccccccccccccccccccccHHHHHHHHHcccccccccccccccccccccccccccccccHHHHHHHHcccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEccccccEEEEcccccccccccccHHHHccccccccHHHHcccccccccc
mdfhnvapdfvkyfdveeksmpaagyayineanflRPRAIKVILQNsksnkrnayipylALNYFDrfiskhtlpevlgnvEDDLVLAANCCLIIAWklrdqsfsfsdfmagnnlprnyskHALNMELQILNGLEWRSRAVVAVNFVPFFLNissakgikrrHVNRIIIEAQAdlsfasckPSVIAAAALVHVCKLLLrdengerpdakrcreslidstyvdedslDSFCTMLDHMCCRKKMFQEINEEFLSDVGGFHVLLNLDDAQQLWSLYDFKEWWWVIATRtakdsepsqsaershagessfsfprppqlaqrshaaessssspwshqvaprshaggasssspfrpgeqpteEIAEtleepedetvlgadseisgsfsrrpgkqpmeegseadietpssfpdrqgiqtmqgepeadprtsmdfelkwdldidetrltidsslfrpptarterrrffsfpisscwhrkrsirsknkeq
MDFHNVAPDFVKYFDVEEKSMPAAGYAYINEANFLRPRAIKVILqnsksnkrnaYIPYLALNYFDRFISKHTLPEVLGNVEDDLVLAANCCLIIAWKLRDQSFSFSDFMAGNNLPRNYSKHALNMELQILNGLEWRSRAVVAVNFVPFFlnissakgikrrhVNRIIIEAQADLSFASCKPSVIAAAALVHVCKLLlrdengerpdakrcreslidstyvdedslDSFCTMLDHMCCRKKMFQEINEEFLSDVGGFHVLLNLDDAQQLWSLYDFKEWWWVIATRTAKDSEPSQSAERSHAGESSFSFPRPPQLAQRSHAAESSSSSPWSHQVAPRSHaggasssspfrpgEQPTEEIAEtleepedetvlgadseisgsfsrrpgkqpmeEGSEADIETPSSFPDRQGIQTmqgepeadprtSMDFELKWDldidetrltidsslfrpptarterrrffsfpisscwhrkrsirsknkeq
MDFHNVAPDFVKYFDVEEKSMPAAGYAYINEANFLRPRAIKVILQNSKSNKRNAYIPYLALNYFDRFISKHTLPEVLGNVEDDLVLAANCCLIIAWKLRDQSFSFSDFMAGNNLPRNYSKHALNMELQILNGLEWRSRAVVAVNFVPFFLNISSAKGIKRRHVNRIIIEAQADLSFASCKPSVIAAAALVHVCKLLLRDENGERPDAKRCRESLIDSTYVDEDSLDSFCTMLDHMCCRKKMFQEINEEFLSDVGGFHVLLNLDDAQQLWSLYDFKEWWWVIATRTAKDSEPSQSAERSHAGESSFSFPRPPQLAQRshaaessssspwshQVAPRSHAGGASSSSPFRPGeqpteeiaetleepedetVLGADSEISGSFSRRPGKQPMEEGSEADIETPSSFPDRQGIQTMQGEPEADPRTSMDFELKWDLDIDETRLTIDSSLFRPPTARTERRRFFSFPISSCWHRKRSIRSKNKEQ
*****VAPDFVKYFDVEEKSMPAAGYAYINEANFLRPRAIKVILQNSKSNKRNAYIPYLALNYFDRFISKHTLPEVLGNVEDDLVLAANCCLIIAWKLRDQSFSFSDFMAGNNLPRNYSKHALNMELQILNGLEWRSRAVVAVNFVPFFLNISSAKGIKRRHVNRIIIEAQADLSFASCKPSVIAAAALVHVCKLLLRD**********CRESLIDSTYVDEDSLDSFCTMLDHMCCRKKMFQEINEEFLSDVGGFHVLLNLDDAQQLWSLYDFKEWWWVIATR*********************************************************************************************************************************************FELKWDLDIDETRLTIDSSLFR*****TERRRFFSFPISSCWH************
*DFHNVAPDFVKYFDVEEKSMPAAGYAYINEANFLRPRAIKVILQNSKSNKRNAYIPYLALNYFDRFISKHTLPEVLGNVEDDLVLAANCCLIIAWKLRDQSFSFSDFMAGNNLPRNYSKHALNMELQILNGLEWRSRAVVAVNFVPFFLNISSAKGIKRRHVNRIIIEAQADLSFASCKPSVIAAAALVHVCKLLLRDENGERPDAKRCRESLIDSTYVDEDSLDSFCTMLDHM****************************DAQQLWSLYDFKEWWW************************************************************************************************************************************************MDFELKWDLDIDETRLTIDSSLFRPPTARTERRRFFSFPISSCWH************
MDFHNVAPDFVKYFDVEEKSMPAAGYAYINEANFLRPRAIKVILQNSKSNKRNAYIPYLALNYFDRFISKHTLPEVLGNVEDDLVLAANCCLIIAWKLRDQSFSFSDFMAGNNLPRNYSKHALNMELQILNGLEWRSRAVVAVNFVPFFLNISSAKGIKRRHVNRIIIEAQADLSFASCKPSVIAAAALVHVCKLLLRDENGERPDAKRCRESLIDSTYVDEDSLDSFCTMLDHMCCRKKMFQEINEEFLSDVGGFHVLLNLDDAQQLWSLYDFKEWWWVIATRT*********************************************************************EEIAETLEEPEDETVLGADSEISGS*********************SSFPDRQGIQ***********TSMDFELKWDLDIDETRLTIDSSLFRPPTARTERRRFFSFPISSCWH************
*DFHNVAPDFVKYFDVEEKSMPAAGYAYINEANFLRPRAIKVILQNSKSNKRNAYIPYLALNYFDRFISKHTLPEVLGNVEDDLVLAANCCLIIAWKLRDQSFSFSDFMAGNNLPRNYSKHALNMELQILNGLEWRSRAVVAVNFVPFFLNISSAKGIKRRHVNRIIIEAQADLSFASCKPSVIAAAALVHVCKLLLRDENGERPDAKRCRESLIDSTYVDEDSLDSFCTMLDHMCCRKKMFQ*********VGGFHV**NLDDAQQLWSLYDFKEWWWVIATRTA********************FPRP*************************************************T*E*PE********************************************************TSMDFELKWDLDIDETRLTIDSSLFRPPTARTERRRFFSFPISSCWH************
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MDFHNVAPDFVKYFDVEEKSMPAAGYAYINEANFLRPRAIKVILQNSKSNKRNAYIPYLALNYFDRFISKHTLPEVLGNVEDDLVLAANCCLIIAWKLRDQSFSFSDFMAGNNLPRNYSKHALNMELQILNGLEWRSRAVVAVNFVPFFLNISSAKGIKRRHVNRIIIEAQADLSFASCKPSVIAAAALVHVCKLLLRDENGERPDAKRCRESLIDSTYVDEDSLDSFCTMLDHMCCRKKMFQEINEEFLSDVGGFHVLLNLDDAQQLWSLYDFKEWWWVIATRTAKDSEPSQSAERSHAGESSFSFPRPPQLAQRSHAAESSSSSPWSHQVAPRSHAGGASSSSPFRPGEQPTEEIAETLEEPEDETVLGADSEISGSFSRRPGKQPMEEGSEADIETPSSFPDRQGIQTMQGEPEADPRTSMDFELKWDLDIDETRLTIDSSLFRPPTARTERRRFFSFPISSCWHRKRSIRSKNKEQ
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query480 2.2.26 [Sep-21-2011]
Q9ZR04302 Putative cyclin-D6-1 OS=A yes no 0.343 0.546 0.312 2e-11
P42751339 Cyclin-D1-1 OS=Arabidopsi no no 0.275 0.389 0.342 1e-08
Q69S43320 Cyclin-D6-1 OS=Oryza sati yes no 0.260 0.390 0.323 2e-08
Q8LGA1308 Cyclin-D4-1 OS=Arabidopsi no no 0.270 0.422 0.312 4e-08
Q0J233308 Cyclin-D2-1 OS=Oryza sati no no 0.272 0.425 0.317 6e-08
P50755291 G1/S-specific cyclin-D1 O N/A no 0.345 0.570 0.270 1e-06
Q0WQN9298 Cyclin-D4-2 OS=Arabidopsi no no 0.268 0.432 0.330 1e-06
Q4KYM5383 Cyclin-D4-2 OS=Oryza sati no no 0.306 0.383 0.290 6e-06
Q8H339354 Cyclin-D1-2 OS=Oryza sati no no 0.262 0.355 0.312 8e-06
Q9SN11361 Cyclin-D3-3 OS=Arabidopsi no no 0.414 0.551 0.266 9e-06
>sp|Q9ZR04|CCD61_ARATH Putative cyclin-D6-1 OS=Arabidopsis thaliana GN=CYCD6-1 PE=3 SV=1 Back     alignment and function desciption
 Score = 70.9 bits (172), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 61/195 (31%), Positives = 95/195 (48%), Gaps = 30/195 (15%)

Query: 14  FDVEEKSMPAAGYAY-INEANFL---RPRAIKVILQNSKSNKRNAYIPYLALNYFDRFIS 69
           F VE + MP++ Y + +  + FL   R +AI  I Q S+    +  + YLA+NY DRF+S
Sbjct: 32  FLVEFQHMPSSHYFHSLKSSAFLLSNRNQAISSITQYSRKFD-DPSLTYLAVNYLDRFLS 90

Query: 70  KHTLPEVLGNVEDDLVLAANCCLIIAWKLRDQSFSFSD------FMAGNNLPRNYSKHAL 123
              +P+    +   L L +  C+ ++ K+R    S SD      F     + R       
Sbjct: 91  SEDMPQSKPWI---LKLISLSCVSLSAKMRKPDMSVSDLPVEGEFFDAQMIER------- 140

Query: 124 NMELQILNGLEWRSRAVVAVNFVPFFLNISSAKG---IKRRH-----VNRIIIEAQADLS 175
            ME  IL  L+WR R+V   +F+ FF+++   K    +  +H      + +    Q D+S
Sbjct: 141 -MENVILGALKWRMRSVTPFSFLAFFISLFELKEEDPLLLKHSLKSQTSDLTFSLQHDIS 199

Query: 176 FASCKPSVIAAAALV 190
           F   KPSVIA AAL+
Sbjct: 200 FLEFKPSVIAGAALL 214

Arabidopsis thaliana (taxid: 3702)
>sp|P42751|CCD11_ARATH Cyclin-D1-1 OS=Arabidopsis thaliana GN=CYCD1-1 PE=1 SV=3 Back     alignment and function description
>sp|Q69S43|CCD61_ORYSJ Cyclin-D6-1 OS=Oryza sativa subsp. japonica GN=CYCD6-1 PE=2 SV=1 Back     alignment and function description
>sp|Q8LGA1|CCD41_ARATH Cyclin-D4-1 OS=Arabidopsis thaliana GN=CYCD4-1 PE=1 SV=2 Back     alignment and function description
>sp|Q0J233|CCD21_ORYSJ Cyclin-D2-1 OS=Oryza sativa subsp. japonica GN=CYCD2-1 PE=3 SV=2 Back     alignment and function description
>sp|P50755|CCND1_XENLA G1/S-specific cyclin-D1 OS=Xenopus laevis GN=ccnd1 PE=2 SV=1 Back     alignment and function description
>sp|Q0WQN9|CCD42_ARATH Cyclin-D4-2 OS=Arabidopsis thaliana GN=CYCD4-2 PE=1 SV=2 Back     alignment and function description
>sp|Q4KYM5|CCD42_ORYSJ Cyclin-D4-2 OS=Oryza sativa subsp. japonica GN=CYCD4-2 PE=2 SV=2 Back     alignment and function description
>sp|Q8H339|CCD12_ORYSJ Cyclin-D1-2 OS=Oryza sativa subsp. japonica GN=CYCD1-2 PE=3 SV=2 Back     alignment and function description
>sp|Q9SN11|CCD33_ARATH Cyclin-D3-3 OS=Arabidopsis thaliana GN=CYCD3-3 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query480
357452443423 Cyclin-D1-1 [Medicago truncatula] gi|355 0.414 0.470 0.330 9e-21
224078830305 predicted protein [Populus trichocarpa] 0.358 0.563 0.367 6e-19
297745660407 unnamed protein product [Vitis vinifera] 0.358 0.422 0.349 7e-16
224114109309 predicted protein [Populus trichocarpa] 0.358 0.556 0.340 1e-15
359495729327 PREDICTED: putative cyclin-D6-1-like, pa 0.358 0.525 0.349 1e-15
224116258257 predicted protein [Populus trichocarpa] 0.329 0.614 0.370 1e-15
225447693294 PREDICTED: putative cyclin-D6-1 [Vitis v 0.381 0.622 0.311 8e-15
296081259315 unnamed protein product [Vitis vinifera] 0.360 0.549 0.315 1e-14
147778292435 hypothetical protein VITISV_034614 [Viti 0.360 0.397 0.311 5e-13
356546684272 PREDICTED: putative cyclin-D6-1-like [Gl 0.387 0.683 0.315 1e-12
>gi|357452443|ref|XP_003596498.1| Cyclin-D1-1 [Medicago truncatula] gi|355485546|gb|AES66749.1| Cyclin-D1-1 [Medicago truncatula] Back     alignment and taxonomy information
 Score =  108 bits (269), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 75/227 (33%), Positives = 116/227 (51%), Gaps = 28/227 (12%)

Query: 13  YFDVEEKSMPAAGYAYINEANFLRPRAIKVILQNSKSNKRNAYIPYLALNYFDRFISKH- 71
           YF+VE + + A            R  A+ +I + S+S+  +++IPYLA+NYFDRF+S+H 
Sbjct: 22  YFNVESEFIAATDTFTTPHDILFRNLAVSIIAKLSRSDDPDSFIPYLAMNYFDRFLSQHK 81

Query: 72  -TLPEVLGNVEDDLV-LAANCCLIIAWKLRDQSFSFSDFMAGNNLPRNYSKH-----ALN 124
             L +V G  E + V L A  CL I+ K+R  SFS   F+   NL R+ +        + 
Sbjct: 82  LNLEDVEGRTETERVRLIAVSCLTISSKMRTNSFSVDRFL--ENLYRDMNVRITPPMVMR 139

Query: 125 MELQILNGLEWRSRAVVAVNFV----PFFLNISSAKGIKRRHVNRIIIEAQADLSFASCK 180
           MEL IL  L+W  R+V A  F+    P+F       G KRR +N II++AQ + +FA   
Sbjct: 140 MELLILQELQWAMRSVTAFCFLNHYYPYFKKFC---GFKRRSINEIIVQAQGEHTFAHYM 196

Query: 181 PSVIAAAALVHVCKLL-----------LRDENGERPDAKRCRESLID 216
           PS IA +A +   +             ++ + G +   K C + ++D
Sbjct: 197 PSHIAISAFLAAAQTKYPSKYSEIAEDIKSKIGLQGQVKECVKKMVD 243

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224078830|ref|XP_002305644.1| predicted protein [Populus trichocarpa] gi|159025731|emb|CAN88866.1| D6-type cyclin [Populus trichocarpa] gi|222848608|gb|EEE86155.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297745660|emb|CBI40871.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224114109|ref|XP_002316670.1| predicted protein [Populus trichocarpa] gi|159025733|emb|CAN88867.1| D6-type cyclin [Populus trichocarpa] gi|222859735|gb|EEE97282.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|359495729|ref|XP_002267937.2| PREDICTED: putative cyclin-D6-1-like, partial [Vitis vinifera] Back     alignment and taxonomy information
>gi|224116258|ref|XP_002317253.1| predicted protein [Populus trichocarpa] gi|159025729|emb|CAN88865.1| D6-type cyclin [Populus trichocarpa] gi|222860318|gb|EEE97865.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225447693|ref|XP_002276869.1| PREDICTED: putative cyclin-D6-1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|296081259|emb|CBI18003.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|147778292|emb|CAN65140.1| hypothetical protein VITISV_034614 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356546684|ref|XP_003541753.1| PREDICTED: putative cyclin-D6-1-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query480
TAIR|locus:2125522302 CYCD6;1 "AT4G03270" [Arabidops 0.354 0.562 0.310 5e-11
TAIR|locus:2020663339 CYCD1;1 "CYCLIN D1;1" [Arabido 0.283 0.401 0.347 3.3e-08
TAIR|locus:2083128361 CYCD3;3 "AT3G50070" [Arabidops 0.487 0.648 0.256 1.8e-07
TAIR|locus:2142504298 CYCD4;2 "AT5G10440" [Arabidops 0.268 0.432 0.330 3.3e-06
UNIPROTKB|P50755291 ccnd1 "G1/S-specific cyclin-D1 0.341 0.563 0.278 4.1e-06
UNIPROTKB|G3REU3284 G3REU3 "Uncharacterized protei 0.366 0.619 0.265 1.8e-05
UNIPROTKB|H0V4A4284 CCND1 "Uncharacterized protein 0.343 0.580 0.266 1.8e-05
UNIPROTKB|F1NS84292 CCND1 "G1/S-specific cyclin-D1 0.343 0.565 0.266 2e-05
UNIPROTKB|P24385295 CCND1 "G1/S-specific cyclin-D1 0.366 0.596 0.265 2e-05
UNIPROTKB|G5BSR9295 GW7_00302 "G1/S-specific cycli 0.343 0.559 0.266 2e-05
TAIR|locus:2125522 CYCD6;1 "AT4G03270" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 177 (67.4 bits), Expect = 5.0e-11, P = 5.0e-11
 Identities = 59/190 (31%), Positives = 94/190 (49%)

Query:    14 FDVEEKSMPAAGYAY-INEANFL---RPRAIKVILQNSKSNKRNAYIPYLALNYFDRFIS 69
             F VE + MP++ Y + +  + FL   R +AI  I Q S+    +  + YLA+NY DRF+S
Sbjct:    32 FLVEFQHMPSSHYFHSLKSSAFLLSNRNQAISSITQYSRKFD-DPSLTYLAVNYLDRFLS 90

Query:    70 KHTLPEVLGNVEDDLVLAANCCLIIAWKLRDQSFSFSDFMAGNNLPRNYSKHALN-MELQ 128
                +P+    +   L L +  C+ ++ K+R    S SD          +    +  ME  
Sbjct:    91 SEDMPQSKPWI---LKLISLSCVSLSAKMRKPDMSVSDLPVEGEF---FDAQMIERMENV 144

Query:   129 ILNGLEWRSRAVVAVNFVPFFLNISSAKG---IKRRH-----VNRIIIEAQADLSFASCK 180
             IL  L+WR R+V   +F+ FF+++   K    +  +H      + +    Q D+SF   K
Sbjct:   145 ILGALKWRMRSVTPFSFLAFFISLFELKEEDPLLLKHSLKSQTSDLTFSLQHDISFLEFK 204

Query:   181 PSVIAAAALV 190
             PSVIA AAL+
Sbjct:   205 PSVIAGAALL 214
GO:0004693 "cyclin-dependent protein serine/threonine kinase activity" evidence=ISS
GO:0005634 "nucleus" evidence=ISM;IEA
GO:0051726 "regulation of cell cycle" evidence=ISS
GO:0005515 "protein binding" evidence=IPI
GO:0000278 "mitotic cell cycle" evidence=RCA
GO:0010440 "stomatal lineage progression" evidence=RCA
GO:0042023 "DNA endoreduplication" evidence=RCA
GO:0045736 "negative regulation of cyclin-dependent protein serine/threonine kinase activity" evidence=RCA
TAIR|locus:2020663 CYCD1;1 "CYCLIN D1;1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2083128 CYCD3;3 "AT3G50070" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2142504 CYCD4;2 "AT5G10440" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|P50755 ccnd1 "G1/S-specific cyclin-D1" [Xenopus laevis (taxid:8355)] Back     alignment and assigned GO terms
UNIPROTKB|G3REU3 G3REU3 "Uncharacterized protein" [Gorilla gorilla gorilla (taxid:9595)] Back     alignment and assigned GO terms
UNIPROTKB|H0V4A4 CCND1 "Uncharacterized protein" [Cavia porcellus (taxid:10141)] Back     alignment and assigned GO terms
UNIPROTKB|F1NS84 CCND1 "G1/S-specific cyclin-D1" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|P24385 CCND1 "G1/S-specific cyclin-D1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|G5BSR9 GW7_00302 "G1/S-specific cyclin-D1" [Heterocephalus glaber (taxid:10181)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
fgenesh4_pg.C_LG_IV000204
SubName- Full=D6-type cyclin; (305 aa)
(Populus trichocarpa)
Predicted Functional Partners:
KRP-7
SubName- Full=Putative uncharacterized protein; (206 aa)
      • 0.688

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query480
pfam00134127 pfam00134, Cyclin_N, Cyclin, N-terminal domain 2e-05
>gnl|CDD|215740 pfam00134, Cyclin_N, Cyclin, N-terminal domain Back     alignment and domain information 
 Score = 44.1 bits (105), Expect = 2e-05
 Identities = 30/89 (33%), Positives = 37/89 (41%), Gaps = 26/89 (29%)

Query: 58  YLALNYFDRFISKHTLPEVLGNVEDD---LVLAANCCLIIAWKLR-DQSFSFSDFMAGNN 113
           YLA+NY DRF+SK         V      LV     CL+IA K       S  DF+    
Sbjct: 53  YLAVNYLDRFLSKQ-------PVPRTKLQLVGVT--CLLIAAKYEEIYPPSVEDFV---- 99

Query: 114 LPRNYSKHA------LNMELQILNGLEWR 136
                + +A      L MEL IL+ L W 
Sbjct: 100 ---YITDNAYTKEEILRMELLILSTLNWD 125

Cyclins regulate cyclin dependent kinases (CDKs). Human cyclin-O is a Uracil-DNA glycosylase that is related to other cyclins. Cyclins contain two domains of similar all-alpha fold, of which this family corresponds with the N-terminal domain. Length = 127

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 480
KOG0656335 consensus G1/S-specific cyclin D [Cell cycle contr 100.0
KOG0655408 consensus G1/S-specific cyclin E [Cell cycle contr 100.0
KOG0653391 consensus Cyclin B and related kinase-activating p 99.97
COG5024440 Cyclin [Cell division and chromosome partitioning] 99.97
KOG0654359 consensus G2/Mitotic-specific cyclin A [Cell cycle 99.93
TIGR00569305 ccl1 cyclin ccl1. University). 99.88
PF00134127 Cyclin_N: Cyclin, N-terminal domain; InterPro: IPR 99.85
KOG0834323 consensus CDK9 kinase-activating protein cyclin T 99.8
KOG0835367 consensus Cyclin L [General function prediction on 99.76
KOG0794264 consensus CDK8 kinase-activating protein cyclin C 99.71
COG5333297 CCL1 Cdk activating kinase (CAK)/RNA polymerase II 99.65
PF02984118 Cyclin_C: Cyclin, C-terminal domain; InterPro: IPR 99.51
PRK00423310 tfb transcription initiation factor IIB; Reviewed 99.42
cd0004388 CYCLIN Cyclin box fold. Protein binding domain fun 99.29
smart0038583 CYCLIN domain present in cyclins, TFIIB and Retino 99.23
KOG2496325 consensus Cdk activating kinase (CAK)/RNA polymera 99.19
COG1405285 SUA7 Transcription initiation factor TFIIIB, Brf1 98.62
smart0038583 CYCLIN domain present in cyclins, TFIIB and Retino 98.37
cd0004388 CYCLIN Cyclin box fold. Protein binding domain fun 98.3
KOG1597308 consensus Transcription initiation factor TFIIB [T 98.26
PF08613149 Cyclin: Cyclin; InterPro: IPR013922 Cyclins are eu 97.9
KOG4164497 consensus Cyclin ik3-1/CABLES [Cell cycle control, 97.28
KOG1598521 consensus Transcription initiation factor TFIIIB, 96.59
PF0038271 TFIIB: Transcription factor TFIIB repeat; InterPro 95.88
PF0038271 TFIIB: Transcription factor TFIIB repeat; InterPro 94.33
PRK00423310 tfb transcription initiation factor IIB; Reviewed 93.55
KOG1674218 consensus Cyclin [General function prediction only 92.19
PF00134127 Cyclin_N: Cyclin, N-terminal domain; InterPro: IPR 85.58
COG1405285 SUA7 Transcription initiation factor TFIIIB, Brf1 83.4
>KOG0656 consensus G1/S-specific cyclin D [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information 
Probab=100.00  E-value=3.2e-44  Score=364.29  Aligned_cols=215  Identities=26%  Similarity=0.392  Sum_probs=196.0

Q ss_pred             chHHHHHHHHHHHhhcCCCCCccc-cCCccc--cHHHHHHHHHHHhhhCCCCCchHHHHHHHHHHHhcCCCCCCccCCcc
Q 037972            5 NVAPDFVKYFDVEEKSMPAAGYAY-INEANF--LRPRAIKVILQNSKSNKRNAYIPYLALNYFDRFISKHTLPEVLGNVE   81 (480)
Q Consensus         5 ~vaE~L~nLl~kEe~~~P~~~yl~-lQ~~~~--mR~~LVDWMieV~~~lkLs~eTl~LAVnyLDRFLS~~~i~~dkp~mK   81 (480)
                      ..++.|.+|+++|+.+.|..+|.. +|+...  ||..+++||++||+++++.++|++||||||||||+...++.++||| 
T Consensus        44 ~~e~~i~~ll~kEe~~~p~~~~~~~~~~~~~~~~R~~A~~WIl~V~~~~~~~~~~~~LA~NYlDRFls~~~l~k~k~W~-  122 (335)
T KOG0656|consen   44 WDERVLANLLEKEEQHNPSLDYFLCVQKLILSSMRKQALDWILKVCEEYNFEPLVFLLAMNYLDRFLSSQKLPKDKPWM-  122 (335)
T ss_pred             ccHHHHHHHHHHHHHhCCCCchhhhcccccccHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHhhcccccCCCchHH-
Confidence            347889999999999999988665 777664  8999999999999999999999999999999999999999999999 


Q ss_pred             cccchhhhhHHHHhhhhhccCCCc-ccccccCCCCCCcHH-HHHHHHHHHHHhcCCccccCChhhHHHHHHHHhcccc--
Q 037972           82 DDLVLAANCCLIIAWKLRDQSFSF-SDFMAGNNLPRNYSK-HALNMELQILNGLEWRSRAVVAVNFVPFFLNISSAKG--  157 (480)
Q Consensus        82 ~~LQLLAvACLfIAAK~EE~~vPL-~dL~v~~sK~Y~f~~-dIlrMEl~IL~tL~W~L~~pTP~~FL~~fL~~L~~~~--  157 (480)
                        +||||+|||+||||+||+.+|+ .|+++.+.+ |+|++ +|++||+.||++|+|+|+.+||++|++||+++++..+  
T Consensus       123 --lQLlAvaCLsLAsKmeE~~vPll~dl~v~~~~-~~feaktI~rmELLVLstL~Wrl~aVTP~sF~~~fl~ki~~~~~~  199 (335)
T KOG0656|consen  123 --LQLLAVACLSLASKMEETDVPLLADLQVEYTD-NVFEAKTIQRMELLVLSTLKWRLRAVTPFSFIDHFLSKISQKDHN  199 (335)
T ss_pred             --HHHHHHHHHHHHHhhcCcCCchhhhhhhcccc-ccccHHHHHHHHHHHHhhccccccCCCchHHHHHHHHHcCcccch
Confidence              9999999999999999999997 899988877 99999 9999999999999999999999999999999999854  


Q ss_pred             --hHHHHHHHHHHHHhccccccCccHHHHHHHHHHHHHHHhcccCCCCCCCcccc-hhhhhhccCCCHHHHHHHHH
Q 037972          158 --IKRRHVNRIIIEAQADLSFASCKPSVIAAAALVHVCKLLLRDENGERPDAKRC-RESLIDSTYVDEDSLDSFCT  230 (480)
Q Consensus       158 --~l~~~A~~lL~lsLlD~~fl~Y~PSvIAAAALllAl~~L~~~e~~~~p~~~~~-~~~L~~~tg~d~edL~~C~~  230 (480)
                        .++.++..++..+..|.+|+.|+||+||+|+++++...+.       +..... .+.+..+++++++.+..|+.
T Consensus       200 ~~~~~~~~s~~ll~~~~d~~Fl~y~pSviAaa~~~~v~~~~~-------~l~~~~~~~~~~~~~~l~~e~~~~~~~  268 (335)
T KOG0656|consen  200 KHLFLKHASLFLLSVITDIKFLEYPPSVIAAAAILSVSASVD-------GLDFREYENNLLSLLSLSKEKVNRCYD  268 (335)
T ss_pred             HHHHHHHHHHHHHHHhhhhhhhcCChHHHHHHHHHHHHHhhc-------chhhhhhhHHHHHHHHhhHHhhhcchh
Confidence              4578899999999999999999999999999999888777       333333 46777889999999999999

>KOG0655 consensus G1/S-specific cyclin E [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0653 consensus Cyclin B and related kinase-activating proteins [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>COG5024 Cyclin [Cell division and chromosome partitioning] Back     alignment and domain information
>KOG0654 consensus G2/Mitotic-specific cyclin A [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>TIGR00569 ccl1 cyclin ccl1 Back     alignment and domain information
>PF00134 Cyclin_N: Cyclin, N-terminal domain; InterPro: IPR006671 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>KOG0834 consensus CDK9 kinase-activating protein cyclin T [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0835 consensus Cyclin L [General function prediction only] Back     alignment and domain information
>KOG0794 consensus CDK8 kinase-activating protein cyclin C [Transcription] Back     alignment and domain information
>COG5333 CCL1 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, cyclin H subunit [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>PF02984 Cyclin_C: Cyclin, C-terminal domain; InterPro: IPR004367 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>PRK00423 tfb transcription initiation factor IIB; Reviewed Back     alignment and domain information
>cd00043 CYCLIN Cyclin box fold Back     alignment and domain information
>smart00385 CYCLIN domain present in cyclins, TFIIB and Retinoblastoma Back     alignment and domain information
>KOG2496 consensus Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, cyclin H subunit [Cell cycle control, cell division, chromosome partitioning; Transcription; Replication, recombination and repair] Back     alignment and domain information
>COG1405 SUA7 Transcription initiation factor TFIIIB, Brf1 subunit/Transcription initiation factor TFIIB [Transcription] Back     alignment and domain information
>smart00385 CYCLIN domain present in cyclins, TFIIB and Retinoblastoma Back     alignment and domain information
>cd00043 CYCLIN Cyclin box fold Back     alignment and domain information
>KOG1597 consensus Transcription initiation factor TFIIB [Transcription] Back     alignment and domain information
>PF08613 Cyclin: Cyclin; InterPro: IPR013922 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>KOG4164 consensus Cyclin ik3-1/CABLES [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG1598 consensus Transcription initiation factor TFIIIB, Brf1 subunit [Transcription] Back     alignment and domain information
>PF00382 TFIIB: Transcription factor TFIIB repeat; InterPro: IPR013150 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>PF00382 TFIIB: Transcription factor TFIIB repeat; InterPro: IPR013150 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>PRK00423 tfb transcription initiation factor IIB; Reviewed Back     alignment and domain information
>KOG1674 consensus Cyclin [General function prediction only] Back     alignment and domain information
>PF00134 Cyclin_N: Cyclin, N-terminal domain; InterPro: IPR006671 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>COG1405 SUA7 Transcription initiation factor TFIIIB, Brf1 subunit/Transcription initiation factor TFIIB [Transcription] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query480
3g33_B306 Crystal Structure Of Cdk4CYCLIN D3 Length = 306 1e-06
>pdb|3G33|B Chain B, Crystal Structure Of Cdk4CYCLIN D3 Length = 306 Back     alignment and structure 
Iteration: 1

 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/188 (23%), Positives = 87/188 (46%), Gaps = 27/188 (14%)
Query: 16  VEEKSMPAAGYAYINEANFLRPRAIKVI----LQNSKSNKRNAYIPYLALNYFDRFISKH 71
           +EE+ +P A Y    +   ++P   K++    L+  +  +    +  LA+NY DR++S  
Sbjct: 48  LEERYVPRASYFQCVQRE-IKPHMRKMLAYWMLEVCEEQRCEEEVFPLAMNYLDRYLS-- 104
Query: 72  TLPEVLGNVEDDLVLAANCCLIIAWKLRDQSFSFSDFMAGNNLPRNYSKHAL------NM 125
                +   +  L L    C+++A KLR+ +    + +        Y+ HA+      + 
Sbjct: 105 ----CVPTRKAQLQLLGAVCMLLASKLRETTPLTIEKLC------IYTDHAVSPRQLRDW 154
Query: 126 ELQILNGLEWRSRAVVAVNFVPFFLNISSA----KGIKRRHVNRIIIEAQADLSFASCKP 181
           E+ +L  L+W   AV+A +F+ F L+  S     + + ++H    +     D +FA   P
Sbjct: 155 EVLVLGKLKWDLAAVIAHDFLAFILHRLSLPRDRQALVKKHAQTFLALCATDYTFAMYPP 214
Query: 182 SVIAAAAL 189
           S+IA  ++
Sbjct: 215 SMIATGSI 222

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query480
1f5q_B252 Gamma herpesvirus cyclin; herpesviral cyclin, cycl 2e-14
2w96_A271 G1/S-specific cyclin-D1; serine/threonine-protein 5e-14
1g3n_C257 V-cyclin; cyclin-dependent kinase, INK4 inhibitor, 2e-13
3g33_B306 CCND3 protein; Ser/Thr protein kinase, cell cycle, 2e-13
2f2c_A254 Cyclin homolog, V-cyclin; small molecule inhibitor 3e-11
2cch_B260 Cyclin A2, cyclin-A; complex(transferase/cell divi 7e-10
2b9r_A269 Human cyclin B1; cell cycle; 2.90A {Homo sapiens} 2e-09
1w98_B283 Cyclin E, G1/S-specific cyclin E1; cell cycle, tra 2e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-05
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1 Length = 252 Back     alignment and structure
 Score = 72.1 bits (177), Expect = 2e-14
 Identities = 28/202 (13%), Positives = 65/202 (32%), Gaps = 33/202 (16%)

Query: 58  YLALNYFDRFISKHTLPEVLGNVEDDLVLAANCCLIIAWKLRD-QSFSFSDF--MAGNNL 114
            LA+   D       +        ++    A   L IA K+R       +    + G   
Sbjct: 71  PLAVALLDELFLSTRIDR------ENYQSTAAVALHIAGKVRAYMPIKATQLAYLCGGA- 123

Query: 115 PRNYSKH-ALNMELQILNGLEWRSRAVVAVNFVPFFLNISSAKGIKRRHVNRIIIEAQAD 173
               +    L +E++ L+ L W +   ++ + + + L+I  A   +       +   +  
Sbjct: 124 ---TTADKLLTLEVKSLDTLSWVADRCLSTDLICYILHIMHAPR-EDYLNIYNLCRPKIF 179

Query: 174 LS-----FASCKPSVIAAAALVHVCKLLLRDENGERPDAKRCRESLIDSTYVDEDSLDSF 228
            +      A  +P +I  A +             +    +   + +  S Y+ ++ L   
Sbjct: 180 CALCDGRSAMKRPVLITLACMHLTMNQ-------KYDYYENRIDGVCKSLYITKEELHQC 232

Query: 229 CTMLDHMCCRKKMFQEINEEFL 250
           C ++D            +E + 
Sbjct: 233 CDLVD------IAIVSFDENYF 248
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A Length = 271 Back     alignment and structure
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1 Length = 257 Back     alignment and structure
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens} Length = 306 Back     alignment and structure
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A Length = 254 Back     alignment and structure
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ... Length = 260 Back     alignment and structure
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B* Length = 269 Back     alignment and structure
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 Length = 283 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query480
2f2c_A254 Cyclin homolog, V-cyclin; small molecule inhibitor 100.0
2cch_B260 Cyclin A2, cyclin-A; complex(transferase/cell divi 100.0
3g33_B306 CCND3 protein; Ser/Thr protein kinase, cell cycle, 100.0
1f5q_B252 Gamma herpesvirus cyclin; herpesviral cyclin, cycl 100.0
1g3n_C257 V-cyclin; cyclin-dependent kinase, INK4 inhibitor, 100.0
2b9r_A269 Human cyclin B1; cell cycle; 2.90A {Homo sapiens} 100.0
2w96_A271 G1/S-specific cyclin-D1; serine/threonine-protein 100.0
1w98_B283 Cyclin E, G1/S-specific cyclin E1; cell cycle, tra 100.0
2ivx_A257 Cyclin-T2; transcription regulation, cell division 100.0
2i53_A258 Cyclin K; cell cycle, transcription, cyclin BOX, C 99.98
3rgf_B285 Cyclin-C; protein kinase complex, transferase,tran 99.98
1zp2_A235 RNA polymerase II holoenzyme cyclin-like subunit; 99.97
2pk2_A358 Cyclin-T1, protein TAT; TAR, twinning, transcripti 99.97
1jkw_A323 Cyclin H; cell cycle, cell division, nuclear prote 99.96
1c9b_A207 General transcription factor IIB; protein-DNA comp 99.91
1ais_B200 TFB TFIIB, protein (transcription initiation facto 99.84
3k7a_M345 Transcription initiation factor IIB; RNA polymeras 99.61
4bbr_M345 Transcription initiation factor IIB; RNA polymeras 99.15
2pmi_B293 PHO85 cyclin PHO80, aminoglycoside anti; cyclin-de 97.73
1ais_B200 TFB TFIIB, protein (transcription initiation facto 96.24
1c9b_A207 General transcription factor IIB; protein-DNA comp 95.62
4bbr_M345 Transcription initiation factor IIB; RNA polymeras 92.86
1zp2_A235 RNA polymerase II holoenzyme cyclin-like subunit; 92.13
3h4c_A260 Transcription factor TFIIB-like; cyclin, transcrip 91.83
3k7a_M345 Transcription initiation factor IIB; RNA polymeras 90.22
2b9r_A269 Human cyclin B1; cell cycle; 2.90A {Homo sapiens} 86.04
3rgf_B285 Cyclin-C; protein kinase complex, transferase,tran 85.55
1jkw_A323 Cyclin H; cell cycle, cell division, nuclear prote 84.33
2cch_B260 Cyclin A2, cyclin-A; complex(transferase/cell divi 83.74
2f2c_A254 Cyclin homolog, V-cyclin; small molecule inhibitor 83.31
2w96_A271 G1/S-specific cyclin-D1; serine/threonine-protein 83.22
1g3n_C257 V-cyclin; cyclin-dependent kinase, INK4 inhibitor, 81.85
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A Back     alignment and structure
Probab=100.00  E-value=1.5e-41  Score=329.93  Aligned_cols=216  Identities=16%  Similarity=0.179  Sum_probs=185.5

Q ss_pred             HHHHHHHHHHHhhcCCCCCccc-cCCccc--cHHHHHHHHHHHhhhCCCCCchHHHHHHHHHHHhcCCCCCCccCCcccc
Q 037972            7 APDFVKYFDVEEKSMPAAGYAY-INEANF--LRPRAIKVILQNSKSNKRNAYIPYLALNYFDRFISKHTLPEVLGNVEDD   83 (480)
Q Consensus         7 aE~L~nLl~kEe~~~P~~~yl~-lQ~~~~--mR~~LVDWMieV~~~lkLs~eTl~LAVnyLDRFLS~~~i~~dkp~mK~~   83 (480)
                      .+.+. |+++|.++.|+.+|+. .|.++.  ||.++||||++|+.+|+++++|+++||+||||||++..+..      .+
T Consensus        21 ~~i~~-l~~~E~~~~p~~~y~~~~q~~i~~~~R~~lvdwl~~v~~~~~l~~etl~lAv~~~DRfls~~~v~~------~~   93 (254)
T 2f2c_A           21 PRVLN-NLKLRELLLPKFTSLWEIQTEVTVDNRTILLTWMHLLCESFELDKSVFPLSVSILDRYLCKKQGTK------KT   93 (254)
T ss_dssp             HHHHH-HHHHHHTTSCCCSSTTTTCSSCCHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHTTTSCCCT------TT
T ss_pred             HHHHH-HHHHHHhhCCCchhhhhcCccCCHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHccCCcCH------HH
Confidence            45667 9999999999999986 777664  99999999999999999999999999999999999988873      55


Q ss_pred             cchhhhhHHHHhhhhhccCCC-cccc-cccCCCCCCcHH-HHHHHHHHHHHhcCCccccCChhhHHHHHHHHhcccchH-
Q 037972           84 LVLAANCCLIIAWKLRDQSFS-FSDF-MAGNNLPRNYSK-HALNMELQILNGLEWRSRAVVAVNFVPFFLNISSAKGIK-  159 (480)
Q Consensus        84 LQLLAvACLfIAAK~EE~~vP-L~dL-~v~~sK~Y~f~~-dIlrMEl~IL~tL~W~L~~pTP~~FL~~fL~~L~~~~~l-  159 (480)
                      +||+|+|||+||+|+||..+| +.+| ++.++   .|+. +|.+||+.||++|+|+++.|||++||.+|+..++.+... 
T Consensus        94 lqLv~~acl~iA~K~eE~~~p~~~d~~~~~~~---~~~~~~i~~mE~~IL~~L~~~l~~~tp~~fl~~~~~~~~~~~~~~  170 (254)
T 2f2c_A           94 LQKIGAACVLIGSKIRTVKPMTVSKLTYLSCD---CFTNLELINQEKDILEALKWDTEAVLATDFLIPLCNALKIPEDLW  170 (254)
T ss_dssp             HHHHHHHHHHHHHHHHCSSCCCHHHHSTTC------CCHHHHHHHHHHHHHHTTTCCCCCCGGGSHHHHHHHTTCCGGGH
T ss_pred             ccHHHHHHHHHHHHhcccCCCCHHHHHHHhCC---CCCHHHHHHHHHHHHHHCCCcCCCCCHHHHHHHHHHHcCCChhhH
Confidence            999999999999999999866 5788 34443   3566 999999999999999999999999999999998876532 


Q ss_pred             ---HHHHHHHHHHHhccccccCccHHHHHHHHHHHHHHHhcccCCCCCCCccc-chhhhhhccCCCHHHHHHHHHHHHHH
Q 037972          160 ---RRHVNRIIIEAQADLSFASCKPSVIAAAALVHVCKLLLRDENGERPDAKR-CRESLIDSTYVDEDSLDSFCTMLDHM  235 (480)
Q Consensus       160 ---~~~A~~lL~lsLlD~~fl~Y~PSvIAAAALllAl~~L~~~e~~~~p~~~~-~~~~L~~~tg~d~edL~~C~~lL~el  235 (480)
                         ...|.++++.++.++.|+.|+||+||||||++|+..+.    + .+..+. +...|..++||++++|.+|++.|.++
T Consensus       171 ~~~~~~a~~ll~~~l~d~~~~~~~PS~iAaAai~la~~~~~----~-~~~~w~~~~~~l~~~tg~~~~~l~~c~~~i~~~  245 (254)
T 2f2c_A          171 PQLYEAASTTICKALIQPNIALLSPGLICAGGLLTTIETDN----T-NCRPWTCYLEDLSSILNFSTNTVRTVKDQVSEA  245 (254)
T ss_dssp             HHHHHHHHHHHHHHTTSGGGTTSCHHHHHHHHHHHHHHTTC----C-SSCCTHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCcchhccCHHHHHHHHHHHHHHhcC----C-CCCChHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence               45689999999999999999999999999999998653    1 122111 16788899999999999999999998


Q ss_pred             Hh
Q 037972          236 CC  237 (480)
Q Consensus       236 ~~  237 (480)
                      +.
T Consensus       246 ~~  247 (254)
T 2f2c_A          246 FS  247 (254)
T ss_dssp             HH
T ss_pred             HH
Confidence            84
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ... Back     alignment and structure
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens} Back     alignment and structure
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B* Back     alignment and structure
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A Back     alignment and structure
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B* Back     alignment and structure
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens} Back     alignment and structure
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe} Back     alignment and structure
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C Back     alignment and structure
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A Back     alignment and structure
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A* Back     alignment and structure
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B* Back     alignment and structure
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae} Back     alignment and structure
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M Back     alignment and structure
>2pmi_B PHO85 cyclin PHO80, aminoglycoside anti; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_B* Back     alignment and structure
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B* Back     alignment and structure
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A* Back     alignment and structure
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M Back     alignment and structure
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe} Back     alignment and structure
>3h4c_A Transcription factor TFIIB-like; cyclin, transcription factor TFIIB repeat; 2.30A {Trypanosoma brucei brucei} Back     alignment and structure
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae} Back     alignment and structure
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B* Back     alignment and structure
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens} Back     alignment and structure
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A Back     alignment and structure
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ... Back     alignment and structure
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A Back     alignment and structure
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A Back     alignment and structure
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 480
d1g3nc1132 a.74.1.1 (C:16-147) Viral cyclin {Kaposi's sarcoma 1e-09
d2cchb1128 a.74.1.1 (B:181-308) Cyclin A {Cow (Bos taurus) [T 4e-09
d1bu2a1127 a.74.1.1 (A:22-148) Viral cyclin {Herpesvirus saim 2e-08
d1f5qb1141 a.74.1.1 (B:6-146) Viral cyclin {Murine herpesviru 2e-08
d1w98b2140 a.74.1.1 (B:88-227) G1/S-specific cyclin-E1 {Human 5e-07
d1jkwa1151 a.74.1.1 (A:11-161) Cyclin H (mcs2) {Human (Homo s 3e-06
d2i53a1144 a.74.1.1 (A:14-157) Cyclin K {Human (Homo sapiens) 6e-05
d2ivxa1143 a.74.1.1 (A:7-149) Cyclin-T2 {Human (Homo sapiens) 1e-04
>d1g3nc1 a.74.1.1 (C:16-147) Viral cyclin {Kaposi's sarcoma-associated herpesvirus [TaxId: 37296]} Length = 132 Back     information, alignment and structure

class: All alpha proteins
fold: Cyclin-like
superfamily: Cyclin-like
family: Cyclin
domain: Viral cyclin
species: Kaposi's sarcoma-associated herpesvirus [TaxId: 37296]

 Score = 53.8 bits (129), Expect = 1e-09
 Identities = 24/134 (17%), Positives = 50/134 (37%), Gaps = 17/134 (12%)

Query: 10  FVKYFDVEEKSMPAAGYAYINEAN---FLRPRAIKVILQNSKSNKRNAYIPYLALNYFDR 66
           F    ++E + + +       + +    +R      +    +       +  LALN  DR
Sbjct: 7   FYNILEIEPRFLTSDSVFGTFQQSLTSHMRKLLGTWMFSVCQEYNLEPNVVALALNLLDR 66

Query: 67  FISKHTLPEVLGNVEDDLVLAANCCLIIAWKLRD-QSFSFSDF--MAGNNLPRNYSKHA- 122
            +    + +      +      + CL++A KLR     S S     A ++    +S+   
Sbjct: 67  LLLIKQVSK------EHFQKTGSACLLVASKLRSLTPISTSSLCYAAADS----FSRQEL 116

Query: 123 LNMELQILNGLEWR 136
           ++ E ++L  L WR
Sbjct: 117 IDQEKELLEKLAWR 130
>d2cchb1 a.74.1.1 (B:181-308) Cyclin A {Cow (Bos taurus) [TaxId: 9913]} Length = 128 Back     information, alignment and structure
>d1bu2a1 a.74.1.1 (A:22-148) Viral cyclin {Herpesvirus saimiri [TaxId: 10381]} Length = 127 Back     information, alignment and structure
>d1f5qb1 a.74.1.1 (B:6-146) Viral cyclin {Murine herpesvirus 68 [TaxId: 33708]} Length = 141 Back     information, alignment and structure
>d1w98b2 a.74.1.1 (B:88-227) G1/S-specific cyclin-E1 {Human (Homo sapiens) [TaxId: 9606]} Length = 140 Back     information, alignment and structure
>d1jkwa1 a.74.1.1 (A:11-161) Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606]} Length = 151 Back     information, alignment and structure
>d2i53a1 a.74.1.1 (A:14-157) Cyclin K {Human (Homo sapiens) [TaxId: 9606]} Length = 144 Back     information, alignment and structure
>d2ivxa1 a.74.1.1 (A:7-149) Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} Length = 143 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query480
d1g3nc1132 Viral cyclin {Kaposi's sarcoma-associated herpesvi 99.95
d2cchb1128 Cyclin A {Cow (Bos taurus) [TaxId: 9913]} 99.94
d1w98b2140 G1/S-specific cyclin-E1 {Human (Homo sapiens) [Tax 99.94
d1bu2a1127 Viral cyclin {Herpesvirus saimiri [TaxId: 10381]} 99.93
d1f5qb1141 Viral cyclin {Murine herpesvirus 68 [TaxId: 33708] 99.9
d2i53a1144 Cyclin K {Human (Homo sapiens) [TaxId: 9606]} 99.77
d1jkwa1151 Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606 99.74
d2ivxa1143 Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} 99.71
d2cchb2124 Cyclin A {Cow (Bos taurus) [TaxId: 9913]} 99.5
d2i53a2110 Cyclin K {Human (Homo sapiens) [TaxId: 9606]} 98.47
d2ivxa2113 Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} 98.38
d1w98b1130 G1/S-specific cyclin-E1 {Human (Homo sapiens) [Tax 98.13
d1aisb295 Transcription factor IIB (TFIIB), core domain {Arc 97.97
d1vola2109 Transcription factor IIB (TFIIB), core domain {Hum 97.84
d1aisb198 Transcription factor IIB (TFIIB), core domain {Arc 97.32
d1jkwa2126 Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606 97.25
d1vola195 Transcription factor IIB (TFIIB), core domain {Hum 97.11
d1vola195 Transcription factor IIB (TFIIB), core domain {Hum 96.89
d1aisb198 Transcription factor IIB (TFIIB), core domain {Arc 96.81
d1aisb295 Transcription factor IIB (TFIIB), core domain {Arc 95.98
d1vola2109 Transcription factor IIB (TFIIB), core domain {Hum 93.88
d2ivxa2113 Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} 92.01
d2i53a1144 Cyclin K {Human (Homo sapiens) [TaxId: 9606]} 87.96
d1f5qb2106 Viral cyclin {Murine herpesvirus 68 [TaxId: 33708] 86.97
d2ivxa1143 Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} 84.58
>d1g3nc1 a.74.1.1 (C:16-147) Viral cyclin {Kaposi's sarcoma-associated herpesvirus [TaxId: 37296]} Back     information, alignment and structure
class: All alpha proteins
fold: Cyclin-like
superfamily: Cyclin-like
family: Cyclin
domain: Viral cyclin
species: Kaposi's sarcoma-associated herpesvirus [TaxId: 37296]

Probab=99.95  E-value=1.8e-28  Score=216.15  Aligned_cols=122  Identities=19%  Similarity=0.333  Sum_probs=109.4

Q ss_pred             HHHHHHHHHHHhhcCCCCCccc-cCCccc--cHHHHHHHHHHHhhhCCCCCchHHHHHHHHHHHhcCCCCCCccCCcccc
Q 037972            7 APDFVKYFDVEEKSMPAAGYAY-INEANF--LRPRAIKVILQNSKSNKRNAYIPYLALNYFDRFISKHTLPEVLGNVEDD   83 (480)
Q Consensus         7 aE~L~nLl~kEe~~~P~~~yl~-lQ~~~~--mR~~LVDWMieV~~~lkLs~eTl~LAVnyLDRFLS~~~i~~dkp~mK~~   83 (480)
                      ++.+++|++.|++++|+.+|+. +|.++.  +|..+|+||.+|+..++++.+|+++||+||||||++..++      +++
T Consensus         4 ~~i~~~l~~~E~~~~p~~~y~~~~q~~it~~~R~~lidWl~~v~~~~~l~~et~~lAv~llDrfls~~~v~------~~~   77 (132)
T d1g3nc1           4 DRIFYNILEIEPRFLTSDSVFGTFQQSLTSHMRKLLGTWMFSVCQEYNLEPNVVALALNLLDRLLLIKQVS------KEH   77 (132)
T ss_dssp             HHHHHHHHHHGGGGCCCGGGHHHHTSSCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTCCCC------HHH
T ss_pred             HHHHHHHHHHHHHHCCChHHHHhcCccCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCcccCc------HHH
Confidence            5789999999999999999988 788765  9999999999999999999999999999999999999887      456


Q ss_pred             cchhhhhHHHHhhhhhccCCC-cccc-cccCCCCCCcHH-HHHHHHHHHHHhcCCcc
Q 037972           84 LVLAANCCLIIAWKLRDQSFS-FSDF-MAGNNLPRNYSK-HALNMELQILNGLEWRS  137 (480)
Q Consensus        84 LQLLAvACLfIAAK~EE~~vP-L~dL-~v~~sK~Y~f~~-dIlrMEl~IL~tL~W~L  137 (480)
                      +||+|+|||+||+|+||..+| +.++ .+.++   .|+. +|.+||+.||++|+|++
T Consensus        78 lqLia~tcl~iAsK~ee~~~~~~~~l~~~~~~---~~t~~ei~~mE~~IL~~L~w~l  131 (132)
T d1g3nc1          78 FQKTGSACLLVASKLRSLTPISTSSLCYAAAD---SFSRQELIDQEKELLEKLAWRT  131 (132)
T ss_dssp             HHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTT---CSCHHHHHHHHHHHHHHTTTCC
T ss_pred             HHHHHHHHHHHHHHhcccCCCCHHHHHHHHcC---CCCHHHHHHHHHHHHHHcCCcC
Confidence            999999999999999999865 4777 45554   3556 99999999999999997
>d2cchb1 a.74.1.1 (B:181-308) Cyclin A {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1w98b2 a.74.1.1 (B:88-227) G1/S-specific cyclin-E1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1bu2a1 a.74.1.1 (A:22-148) Viral cyclin {Herpesvirus saimiri [TaxId: 10381]} Back     information, alignment and structure
>d1f5qb1 a.74.1.1 (B:6-146) Viral cyclin {Murine herpesvirus 68 [TaxId: 33708]} Back     information, alignment and structure
>d2i53a1 a.74.1.1 (A:14-157) Cyclin K {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jkwa1 a.74.1.1 (A:11-161) Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ivxa1 a.74.1.1 (A:7-149) Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cchb2 a.74.1.1 (B:309-432) Cyclin A {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d2i53a2 a.74.1.1 (A:158-267) Cyclin K {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ivxa2 a.74.1.1 (A:150-262) Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1w98b1 a.74.1.1 (B:228-357) G1/S-specific cyclin-E1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1aisb2 a.74.1.2 (B:1206-1300) Transcription factor IIB (TFIIB), core domain {Archaeon Pyrococcus woesei [TaxId: 2262]} Back     information, alignment and structure
>d1vola2 a.74.1.2 (A:208-316) Transcription factor IIB (TFIIB), core domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1aisb1 a.74.1.2 (B:1108-1205) Transcription factor IIB (TFIIB), core domain {Archaeon Pyrococcus woesei [TaxId: 2262]} Back     information, alignment and structure
>d1jkwa2 a.74.1.1 (A:162-287) Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vola1 a.74.1.2 (A:113-207) Transcription factor IIB (TFIIB), core domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vola1 a.74.1.2 (A:113-207) Transcription factor IIB (TFIIB), core domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1aisb1 a.74.1.2 (B:1108-1205) Transcription factor IIB (TFIIB), core domain {Archaeon Pyrococcus woesei [TaxId: 2262]} Back     information, alignment and structure
>d1aisb2 a.74.1.2 (B:1206-1300) Transcription factor IIB (TFIIB), core domain {Archaeon Pyrococcus woesei [TaxId: 2262]} Back     information, alignment and structure
>d1vola2 a.74.1.2 (A:208-316) Transcription factor IIB (TFIIB), core domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ivxa2 a.74.1.1 (A:150-262) Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2i53a1 a.74.1.1 (A:14-157) Cyclin K {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1f5qb2 a.74.1.1 (B:147-252) Viral cyclin {Murine herpesvirus 68 [TaxId: 33708]} Back     information, alignment and structure
>d2ivxa1 a.74.1.1 (A:7-149) Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure